Query 000086
Match_columns 2304
No_of_seqs 985 out of 7378
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k8x_A Acetyl-COA carboxylase; 100.0 2E-166 8E-171 1588.4 47.8 749 1495-2300 1-758 (758)
2 2x24_A Acetyl-COA carboxylase; 100.0 2E-152 6E-157 1474.9 45.2 756 1493-2301 18-786 (793)
3 3n6r_A Propionyl-COA carboxyla 100.0 5.8E-98 2E-102 986.9 52.3 632 47-755 1-681 (681)
4 3u9t_A MCC alpha, methylcroton 100.0 7.3E-97 2E-101 975.6 45.6 626 46-757 26-673 (675)
5 3jrx_A Acetyl-COA carboxylase 100.0 2.7E-95 9E-100 941.6 48.0 553 7-570 14-573 (587)
6 3glk_A Acetyl-COA carboxylase 100.0 7.3E-89 2.5E-93 879.4 42.5 514 29-553 21-540 (540)
7 1on3_A Methylmalonyl-COA carbo 100.0 2E-79 6.9E-84 779.5 34.9 417 1623-2187 82-506 (523)
8 1vrg_A Propionyl-COA carboxyla 100.0 3.3E-78 1.1E-82 768.9 36.1 416 1623-2187 85-510 (527)
9 3iav_A Propionyl-COA carboxyla 100.0 1.7E-78 5.7E-83 767.6 33.0 417 1623-2186 84-512 (530)
10 2bzr_A Propionyl-COA carboxyla 100.0 3E-78 1E-82 770.1 34.3 420 1623-2187 95-531 (548)
11 3n6r_B Propionyl-COA carboxyla 100.0 5.9E-78 2E-82 761.6 36.1 412 1623-2186 92-513 (531)
12 3hbl_A Pyruvate carboxylase; T 100.0 1.1E-75 3.7E-80 806.7 60.1 447 45-552 1-453 (1150)
13 3gf3_A Glutaconyl-COA decarbox 100.0 7.9E-78 2.7E-82 766.6 35.6 466 1594-2187 65-561 (588)
14 1pix_A Glutaconyl-COA decarbox 100.0 2.3E-77 7.7E-82 766.0 36.6 462 1594-2187 64-559 (587)
15 3u9r_B MCC beta, methylcrotony 100.0 6.6E-77 2.3E-81 754.0 38.9 447 1594-2186 77-539 (555)
16 1x0u_A Hypothetical methylmalo 100.0 2.1E-76 7.1E-81 752.8 30.4 417 1623-2187 78-505 (522)
17 1w96_A ACC, acetyl-coenzyme A 100.0 2.4E-74 8.1E-79 750.4 49.7 533 5-553 11-554 (554)
18 3ouz_A Biotin carboxylase; str 100.0 2.3E-70 7.9E-75 695.5 47.3 437 47-551 5-445 (446)
19 3va7_A KLLA0E08119P; carboxyla 100.0 2.6E-67 9E-72 724.2 37.9 442 43-552 26-471 (1236)
20 2qf7_A Pyruvate carboxylase pr 100.0 3.6E-65 1.2E-69 704.1 37.8 451 41-552 9-471 (1165)
21 2vpq_A Acetyl-COA carboxylase; 100.0 9E-62 3.1E-66 617.3 46.5 442 48-554 1-446 (451)
22 2dzd_A Pyruvate carboxylase; b 100.0 1.9E-61 6.4E-66 616.2 47.1 446 46-552 4-455 (461)
23 1ulz_A Pyruvate carboxylase N- 100.0 2.1E-61 7.1E-66 614.0 44.5 438 47-553 1-444 (451)
24 2w70_A Biotin carboxylase; lig 100.0 4.7E-61 1.6E-65 610.4 45.3 439 47-555 1-446 (449)
25 4dim_A Phosphoribosylglycinami 100.0 4.3E-45 1.5E-49 457.2 36.7 386 47-520 6-401 (403)
26 4ffl_A PYLC; amino acid, biosy 100.0 8E-42 2.7E-46 422.3 32.8 356 48-520 1-358 (363)
27 1a9x_A Carbamoyl phosphate syn 100.0 7.9E-42 2.7E-46 473.2 32.0 396 46-538 5-432 (1073)
28 3vot_A L-amino acid ligase, BL 100.0 7.8E-41 2.7E-45 422.1 34.8 395 46-527 3-419 (425)
29 1kjq_A GART 2, phosphoribosylg 100.0 5.3E-40 1.8E-44 409.3 39.6 378 47-521 10-391 (391)
30 2dwc_A PH0318, 433AA long hypo 100.0 1.7E-39 5.9E-44 410.8 36.5 390 47-522 18-416 (433)
31 3aw8_A PURK, phosphoribosylami 100.0 3.3E-39 1.1E-43 399.8 38.3 360 50-518 1-361 (369)
32 4e4t_A Phosphoribosylaminoimid 100.0 9.7E-39 3.3E-43 402.6 38.3 372 47-519 34-416 (419)
33 3k5i_A Phosphoribosyl-aminoimi 100.0 5.9E-38 2E-42 393.8 37.4 369 48-517 24-398 (403)
34 3ax6_A Phosphoribosylaminoimid 100.0 5.1E-37 1.7E-41 381.7 37.5 368 48-521 1-372 (380)
35 2yw2_A Phosphoribosylamine--gl 100.0 1.8E-36 6E-41 382.1 37.0 376 50-521 2-407 (424)
36 3vmm_A Alanine-anticapsin liga 100.0 7.5E-37 2.6E-41 390.7 31.6 376 81-521 52-468 (474)
37 2ip4_A PURD, phosphoribosylami 100.0 5.2E-36 1.8E-40 377.2 38.3 374 50-521 2-400 (417)
38 3eth_A Phosphoribosylaminoimid 100.0 2.4E-36 8.3E-41 372.5 32.7 336 48-517 1-339 (355)
39 2z04_A Phosphoribosylaminoimid 100.0 1.8E-36 6.2E-41 374.6 30.0 358 48-521 1-359 (365)
40 3q2o_A Phosphoribosylaminoimid 100.0 8.3E-36 2.8E-40 372.4 35.9 295 48-398 14-309 (389)
41 2qk4_A Trifunctional purine bi 100.0 3.4E-36 1.1E-40 382.9 32.8 383 47-521 23-436 (452)
42 3orq_A N5-carboxyaminoimidazol 100.0 5.4E-35 1.8E-39 363.9 34.5 294 46-397 10-304 (377)
43 1vkz_A Phosphoribosylamine--gl 100.0 5.1E-35 1.7E-39 368.1 33.7 369 48-521 15-403 (412)
44 2yrx_A Phosphoribosylglycinami 100.0 4.9E-34 1.7E-38 363.1 36.4 376 48-521 21-426 (451)
45 3mjf_A Phosphoribosylamine--gl 100.0 1.9E-33 6.5E-38 355.8 39.9 385 48-521 3-415 (431)
46 2xcl_A Phosphoribosylamine--gl 100.0 4E-34 1.4E-38 360.4 32.6 374 50-521 2-405 (422)
47 3lp8_A Phosphoribosylamine-gly 100.0 3.2E-33 1.1E-37 354.7 39.1 384 47-521 20-430 (442)
48 2f9i_B Acetyl-coenzyme A carbo 100.0 3.8E-36 1.3E-40 357.6 11.1 255 1527-1869 22-281 (285)
49 1a9x_A Carbamoyl phosphate syn 100.0 2E-32 6.7E-37 379.5 34.8 304 47-397 558-875 (1073)
50 2f9y_B Acetyl-coenzyme A carbo 100.0 1.5E-33 5.3E-38 338.6 16.8 258 1527-1871 16-280 (304)
51 2pn1_A Carbamoylphosphate synt 100.0 7.9E-31 2.7E-35 319.4 28.2 290 49-397 5-300 (331)
52 4fu0_A D-alanine--D-alanine li 100.0 1.8E-29 6.2E-34 312.0 19.5 242 123-389 89-342 (357)
53 1ehi_A LMDDL2, D-alanine:D-lac 99.9 4.7E-27 1.6E-31 292.6 25.7 234 129-389 91-346 (377)
54 4eg0_A D-alanine--D-alanine li 99.9 7.9E-27 2.7E-31 283.6 24.3 278 46-391 11-311 (317)
55 2i87_A D-alanine-D-alanine lig 99.9 4.7E-27 1.6E-31 291.0 19.5 235 128-390 84-337 (364)
56 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 3.1E-26 1.1E-30 275.3 25.9 273 47-391 1-302 (306)
57 2f9y_A Acetyl-COA carboxylase, 99.9 2E-27 6.9E-32 288.7 14.4 246 1846-2189 56-311 (339)
58 2f9i_A Acetyl-coenzyme A carbo 99.9 2.3E-27 8E-32 287.4 14.9 249 1843-2189 36-297 (327)
59 3e5n_A D-alanine-D-alanine lig 99.9 1.3E-26 4.5E-31 289.3 20.3 234 129-390 115-365 (386)
60 3i12_A D-alanine-D-alanine lig 99.9 7.1E-26 2.4E-30 280.7 24.1 234 129-390 96-346 (364)
61 2f9i_B Acetyl-coenzyme A carbo 99.9 3.8E-26 1.3E-30 271.8 19.8 196 1890-2185 50-278 (285)
62 3r5x_A D-alanine--D-alanine li 99.9 6.3E-26 2.2E-30 273.6 21.2 270 50-391 5-295 (307)
63 1e4e_A Vancomycin/teicoplanin 99.9 4.8E-26 1.6E-30 279.8 17.5 232 129-391 88-337 (343)
64 3lwb_A D-alanine--D-alanine li 99.9 2.9E-25 1E-29 276.0 21.2 231 131-390 109-361 (373)
65 3se7_A VANA; alpha-beta struct 99.9 8.9E-26 3E-30 277.9 16.0 232 129-390 88-336 (346)
66 3tqt_A D-alanine--D-alanine li 99.9 1.6E-24 5.3E-29 269.3 23.7 233 130-390 97-347 (372)
67 2fb9_A D-alanine:D-alanine lig 99.9 8.5E-25 2.9E-29 266.7 20.7 231 129-390 74-316 (322)
68 3k3p_A D-alanine--D-alanine li 99.9 1.6E-24 5.3E-29 270.2 22.8 235 131-390 119-367 (383)
69 1uc8_A LYSX, lysine biosynthes 99.9 1.1E-24 3.7E-29 258.0 17.4 270 51-394 2-278 (280)
70 2r85_A PURP protein PF1517; AT 99.9 2.7E-23 9.1E-28 252.8 21.3 260 49-373 3-293 (334)
71 2pvp_A D-alanine-D-alanine lig 99.9 3.6E-23 1.2E-27 256.8 20.6 232 131-397 107-350 (367)
72 2r7k_A 5-formaminoimidazole-4- 99.9 1.2E-22 4E-27 250.9 18.3 287 35-384 7-329 (361)
73 3df7_A Putative ATP-grAsp supe 99.9 3.5E-21 1.2E-25 233.3 17.2 218 115-399 57-278 (305)
74 2pbz_A Hypothetical protein; N 99.8 8.4E-22 2.9E-26 239.3 7.7 249 50-371 4-272 (320)
75 2f9y_B Acetyl-coenzyme A carbo 99.8 3.2E-19 1.1E-23 214.7 16.4 197 1890-2184 44-274 (304)
76 3ln7_A Glutathione biosynthesi 99.7 2.8E-18 9.5E-23 228.2 11.7 241 118-393 433-754 (757)
77 1gsa_A Glutathione synthetase; 99.7 1.5E-17 5.3E-22 199.9 13.1 285 49-393 2-311 (316)
78 1z2n_X Inositol 1,3,4-trisphos 99.7 5.3E-16 1.8E-20 188.4 17.0 198 131-371 55-302 (324)
79 3ln6_A Glutathione biosynthesi 99.6 1.9E-16 6.4E-21 211.3 8.0 243 119-392 429-747 (750)
80 1wr2_A Hypothetical protein PH 99.6 3.7E-16 1.3E-20 182.8 8.7 172 171-369 20-218 (238)
81 2dn8_A Acetyl-COA carboxylase 99.6 9.5E-16 3.2E-20 156.3 9.8 97 673-770 3-100 (100)
82 3gf3_A Glutaconyl-COA decarbox 99.6 4.2E-15 1.4E-19 190.9 14.8 153 1895-2086 60-223 (588)
83 1pix_A Glutaconyl-COA decarbox 99.6 1E-14 3.5E-19 188.1 17.2 160 1895-2094 59-233 (587)
84 1x0u_A Hypothetical methylmalo 99.6 2.4E-15 8.4E-20 192.5 9.5 194 1596-1869 294-506 (522)
85 1on3_A Methylmalonyl-COA carbo 99.6 2.3E-14 7.7E-19 183.4 17.9 148 1895-2086 42-208 (523)
86 2bzr_A Propionyl-COA carboxyla 99.6 4.3E-14 1.5E-18 181.3 19.5 148 1895-2086 55-222 (548)
87 1vrg_A Propionyl-COA carboxyla 99.6 2.3E-14 7.9E-19 183.5 16.7 150 1895-2086 45-212 (527)
88 2f9i_A Acetyl-coenzyme A carbo 99.5 3.2E-14 1.1E-18 172.8 15.4 161 1624-1854 105-277 (327)
89 3iav_A Propionyl-COA carboxyla 99.5 2.9E-14 9.8E-19 181.8 15.3 148 1895-2086 44-211 (530)
90 3n6r_B Propionyl-COA carboxyla 99.5 1.8E-13 6.1E-18 174.4 19.1 148 1895-2086 52-219 (531)
91 2f9y_A Acetyl-COA carboxylase, 99.5 6.1E-14 2.1E-18 170.8 13.2 161 1624-1854 119-291 (339)
92 1i7n_A Synapsin II; synapse, p 99.5 9.8E-13 3.3E-17 159.0 21.5 218 131-390 68-302 (309)
93 3u9r_B MCC beta, methylcrotony 99.5 3.9E-13 1.3E-17 171.9 18.3 153 1895-2085 72-238 (555)
94 1pk8_A RAT synapsin I; ATP bin 99.4 2.1E-12 7E-17 160.3 21.9 219 131-391 180-415 (422)
95 2p0a_A Synapsin-3, synapsin II 99.4 2E-12 6.7E-17 158.1 19.7 220 131-392 85-321 (344)
96 2kcc_A Acetyl-COA carboxylase 99.4 2.5E-13 8.5E-18 134.2 8.1 77 684-760 2-78 (84)
97 2cqy_A Propionyl-COA carboxyla 99.4 6.1E-14 2.1E-18 143.1 3.2 98 168-288 4-107 (108)
98 2q7d_A Inositol-tetrakisphosph 99.4 2.4E-12 8.4E-17 158.4 14.4 175 155-369 100-312 (346)
99 3bg3_A Pyruvate carboxylase, m 99.3 3.4E-12 1.1E-16 168.6 9.4 118 613-755 594-718 (718)
100 2fp4_B Succinyl-COA ligase [GD 99.3 4.8E-12 1.6E-16 157.9 9.0 166 172-369 4-210 (395)
101 1bdo_A Acetyl-COA carboxylase; 99.3 5.3E-12 1.8E-16 123.2 7.1 70 686-755 3-80 (80)
102 3crk_C Dihydrolipoyllysine-res 99.2 8.3E-12 2.8E-16 124.0 8.3 67 692-758 16-84 (87)
103 1z6h_A Biotin/lipoyl attachmen 99.2 1.1E-11 3.6E-16 118.3 8.6 69 689-757 1-70 (72)
104 2dnc_A Pyruvate dehydrogenase 99.2 1.4E-11 4.7E-16 125.2 8.7 67 693-759 19-87 (98)
105 1k8m_A E2 component of branche 99.2 1.2E-11 4.1E-16 124.5 8.0 68 692-759 15-83 (93)
106 2nu8_B SCS-beta, succinyl-COA 99.2 1.9E-11 6.5E-16 152.5 9.6 165 172-369 4-203 (388)
107 1ghj_A E2, E2, the dihydrolipo 99.2 1.5E-11 5.1E-16 119.8 6.5 66 691-756 11-77 (79)
108 1dcz_A Transcarboxylase 1.3S s 99.2 7.1E-11 2.4E-15 114.2 9.3 71 685-755 6-77 (77)
109 2ejm_A Methylcrotonoyl-COA car 99.1 5.9E-11 2E-15 120.8 8.9 77 685-761 12-89 (99)
110 2d5d_A Methylmalonyl-COA decar 99.1 7.2E-11 2.5E-15 113.0 8.9 69 687-755 5-74 (74)
111 2qf7_A Pyruvate carboxylase pr 99.1 6.6E-11 2.3E-15 164.9 12.1 119 634-755 1039-1164(1165)
112 1y8o_B Dihydrolipoyllysine-res 99.1 6.9E-11 2.4E-15 125.3 8.8 65 694-758 40-106 (128)
113 2dne_A Dihydrolipoyllysine-res 99.1 4.1E-11 1.4E-15 123.8 6.8 66 693-758 19-86 (108)
114 2l5t_A Lipoamide acyltransfera 99.1 3.9E-11 1.3E-15 116.2 6.1 65 691-755 11-76 (77)
115 2jku_A Propionyl-COA carboxyla 99.1 1.4E-11 4.7E-16 124.3 2.9 73 683-755 21-94 (94)
116 2x24_A Acetyl-COA carboxylase; 99.1 4.5E-10 1.6E-14 147.6 15.4 165 1895-2087 51-301 (793)
117 2k7v_A Dihydrolipoyllysine-res 99.1 2.2E-11 7.6E-16 120.4 2.3 70 689-758 4-74 (85)
118 3va7_A KLLA0E08119P; carboxyla 99.1 8.8E-11 3E-15 163.7 8.7 67 688-754 1168-1235(1236)
119 1gjx_A Pyruvate dehydrogenase; 99.1 4.6E-11 1.6E-15 116.9 3.1 68 690-757 10-78 (81)
120 1qjo_A Dihydrolipoamide acetyl 99.0 1.7E-10 5.9E-15 112.5 6.9 64 695-758 14-78 (80)
121 1pmr_A Dihydrolipoyl succinylt 99.0 1.5E-11 5.2E-16 120.1 -0.9 65 692-756 13-78 (80)
122 1iyu_A E2P, dihydrolipoamide a 99.0 4E-10 1.4E-14 109.7 8.0 63 695-758 13-76 (79)
123 3t7a_A Inositol pyrophosphate 98.9 3.3E-10 1.1E-14 133.9 1.1 212 132-372 58-294 (330)
124 1zko_A Glycine cleavage system 98.8 2.6E-09 9E-14 114.1 4.9 74 688-761 37-119 (136)
125 3dva_I Dihydrolipoyllysine-res 98.7 1.7E-09 5.9E-14 136.2 0.0 66 694-759 15-81 (428)
126 3ufx_B Succinyl-COA synthetase 98.7 5.7E-08 1.9E-12 121.6 12.4 99 172-293 4-110 (397)
127 1zy8_K Pyruvate dehydrogenase 98.6 4.7E-09 1.6E-13 121.8 0.0 64 694-757 16-81 (229)
128 3k8x_A Acetyl-COA carboxylase; 98.5 3.1E-07 1.1E-11 120.1 14.1 141 1921-2089 73-290 (758)
129 2k32_A A; NMR {Campylobacter j 98.5 6.8E-08 2.3E-12 100.7 6.3 72 689-760 3-105 (116)
130 1hpc_A H protein of the glycin 98.4 2.1E-07 7.3E-12 99.0 5.9 73 689-761 29-110 (131)
131 3a7l_A H-protein, glycine clea 98.2 5.5E-07 1.9E-11 95.6 4.8 73 689-761 30-111 (128)
132 1onl_A Glycine cleavage system 98.2 5.6E-07 1.9E-11 95.5 4.7 73 689-761 29-110 (128)
133 2f1m_A Acriflavine resistance 97.4 7.3E-05 2.5E-09 89.0 3.6 72 688-759 23-168 (277)
134 3ne5_B Cation efflux system pr 97.3 0.00024 8E-09 89.7 7.0 71 687-757 121-241 (413)
135 3lnn_A Membrane fusion protein 97.3 0.00023 7.9E-09 87.8 6.6 72 687-758 57-206 (359)
136 3klr_A Glycine cleavage system 97.2 0.0003 1E-08 74.2 6.2 69 692-760 28-105 (125)
137 2f6i_A ATP-dependent CLP prote 97.2 0.0012 4E-08 76.3 11.5 94 1978-2086 45-139 (215)
138 3fpp_A Macrolide-specific effl 97.2 0.00026 9E-09 86.6 6.3 72 687-758 31-191 (341)
139 1y7o_A ATP-dependent CLP prote 97.2 0.0025 8.6E-08 73.7 13.8 94 1978-2086 51-146 (218)
140 3viv_A 441AA long hypothetical 97.1 0.0024 8.1E-08 74.4 13.1 91 1978-2084 16-109 (230)
141 3qwd_A ATP-dependent CLP prote 97.0 0.0045 1.5E-07 70.8 13.2 93 1978-2086 33-128 (203)
142 2cby_A ATP-dependent CLP prote 97.0 0.0049 1.7E-07 70.7 13.4 94 1978-2086 33-128 (208)
143 3mwd_A ATP-citrate synthase; A 96.9 0.0051 1.7E-07 77.5 14.0 112 174-299 9-135 (425)
144 1vf7_A Multidrug resistance pr 96.9 0.00032 1.1E-08 87.1 3.2 72 687-758 43-174 (369)
145 3mxu_A Glycine cleavage system 96.9 0.001 3.5E-08 71.4 6.2 46 693-738 51-97 (143)
146 1yg6_A ATP-dependent CLP prote 96.9 0.0049 1.7E-07 69.9 12.1 94 1978-2086 32-127 (193)
147 3tzu_A GCVH, glycine cleavage 96.8 0.00081 2.8E-08 71.9 5.2 47 692-738 45-92 (137)
148 1tg6_A Putative ATP-dependent 96.8 0.0074 2.5E-07 71.9 13.1 94 1978-2086 88-183 (277)
149 3p2l_A ATP-dependent CLP prote 96.7 0.0086 3E-07 68.4 12.2 93 1978-2086 36-131 (201)
150 4dk0_A Putative MACA; alpha-ha 96.6 0.00036 1.2E-08 86.3 -0.0 36 686-721 31-66 (369)
151 3cdx_A Succinylglutamatedesucc 96.6 0.0032 1.1E-07 77.9 8.4 70 688-759 268-341 (354)
152 2gpr_A Glucose-permease IIA co 96.5 0.001 3.5E-08 72.7 3.4 66 687-756 7-112 (154)
153 3pff_A ATP-citrate synthase; p 96.4 0.01 3.4E-07 80.1 12.6 113 173-299 8-135 (829)
154 3tig_A TTL protein; ATP-grAsp, 96.4 0.0082 2.8E-07 74.4 10.5 153 229-393 146-359 (380)
155 1ax3_A Iiaglc, glucose permeas 96.3 0.002 6.9E-08 71.0 3.7 71 683-757 8-118 (162)
156 3hgb_A Glycine cleavage system 96.0 0.0069 2.4E-07 65.8 6.2 45 694-738 57-102 (155)
157 3na6_A Succinylglutamate desuc 96.0 0.013 4.3E-07 71.9 9.3 71 686-758 256-330 (331)
158 1f3z_A EIIA-GLC, glucose-speci 96.0 0.0037 1.3E-07 68.7 3.8 66 688-757 13-118 (161)
159 4gm2_A ATP-dependent CLP prote 95.9 0.036 1.2E-06 63.3 12.0 105 1977-2087 33-140 (205)
160 3n6r_A Propionyl-COA carboxyla 95.6 0.021 7.3E-07 76.4 9.5 106 613-719 541-681 (681)
161 3viv_A 441AA long hypothetical 95.2 0.042 1.4E-06 64.0 9.2 39 1780-1818 68-109 (230)
162 3bf0_A Protease 4; bacterial, 95.1 0.23 8E-06 65.4 17.1 88 1982-2083 320-409 (593)
163 3fmc_A Putative succinylglutam 94.9 0.034 1.1E-06 69.2 7.7 68 687-756 290-363 (368)
164 2dn8_A Acetyl-COA carboxylase 94.2 0.023 7.8E-07 57.7 3.1 59 712-771 5-64 (100)
165 3u9t_A MCC alpha, methylcroton 94.1 0.032 1.1E-06 74.5 5.5 109 608-720 555-672 (675)
166 3r6h_A Enoyl-COA hydratase, EC 93.0 1.1 3.8E-05 52.0 15.2 94 1979-2080 26-130 (233)
167 3hbl_A Pyruvate carboxylase; T 92.6 0.14 4.9E-06 72.1 8.2 120 634-757 1022-1148(1150)
168 3hp0_A Putative polyketide bio 92.4 0.55 1.9E-05 55.8 11.6 87 1779-1866 100-200 (267)
169 1qjo_A Dihydrolipoamide acetyl 92.2 0.084 2.9E-06 50.9 3.6 35 686-720 42-76 (80)
170 3bg3_A Pyruvate carboxylase, m 91.7 0.054 1.8E-06 72.4 2.1 105 606-719 614-718 (718)
171 3rst_A Signal peptide peptidas 91.6 0.46 1.6E-05 55.6 9.7 85 1985-2083 30-117 (240)
172 2l5t_A Lipoamide acyltransfera 91.6 0.1 3.6E-06 50.0 3.5 34 687-720 44-77 (77)
173 1z6h_A Biotin/lipoyl attachmen 91.3 0.083 2.8E-06 49.7 2.4 34 687-720 36-69 (72)
174 1bdo_A Acetyl-COA carboxylase; 91.2 0.13 4.5E-06 49.6 3.7 32 688-719 49-80 (80)
175 2qj8_A MLR6093 protein; struct 91.1 0.35 1.2E-05 59.2 8.3 66 689-756 259-328 (332)
176 4di1_A Enoyl-COA hydratase ECH 91.0 6.3 0.00022 47.0 18.8 95 1979-2080 45-150 (277)
177 3lke_A Enoyl-COA hydratase; ny 90.9 0.22 7.5E-06 59.0 6.0 89 1779-1868 101-204 (263)
178 1dci_A Dienoyl-COA isomerase; 90.8 0.12 4E-06 61.7 3.7 86 1779-1865 107-208 (275)
179 2kcc_A Acetyl-COA carboxylase 90.4 0.17 5.7E-06 49.7 3.7 45 726-771 7-52 (84)
180 2d5d_A Methylmalonyl-COA decar 90.4 0.25 8.7E-06 46.5 4.8 47 725-772 6-53 (74)
181 3pea_A Enoyl-COA hydratase/iso 90.4 8.6 0.00029 45.3 19.0 95 1979-2080 27-133 (261)
182 1iyu_A E2P, dihydrolipoamide a 90.3 0.19 6.4E-06 48.5 3.9 34 687-720 41-74 (79)
183 3l3s_A Enoyl-COA hydratase/iso 90.2 9.3 0.00032 45.1 19.1 94 1979-2080 28-139 (263)
184 1dcz_A Transcarboxylase 1.3S s 90.1 0.27 9.4E-06 46.8 4.8 48 724-772 8-56 (77)
185 3isa_A Putative enoyl-COA hydr 89.8 0.27 9.2E-06 58.0 5.5 86 1779-1866 98-195 (254)
186 1ghj_A E2, E2, the dihydrolipo 89.6 0.19 6.3E-06 48.5 3.3 34 687-720 44-77 (79)
187 3hrx_A Probable enoyl-COA hydr 89.6 13 0.00045 43.5 19.7 97 1978-2081 21-127 (254)
188 3i47_A Enoyl COA hydratase/iso 89.5 0.33 1.1E-05 57.7 6.0 86 1779-1866 99-198 (268)
189 2k7v_A Dihydrolipoyllysine-res 89.5 0.17 5.6E-06 49.7 2.8 37 685-721 37-73 (85)
190 3sll_A Probable enoyl-COA hydr 89.3 12 0.00041 44.8 19.4 98 1978-2082 45-160 (290)
191 3bf0_A Protease 4; bacterial, 89.2 1.7 5.9E-05 57.3 12.9 87 1984-2085 70-159 (593)
192 3gow_A PAAG, probable enoyl-CO 89.2 14 0.00048 43.3 19.5 96 1979-2081 22-127 (254)
193 3kqf_A Enoyl-COA hydratase/iso 89.0 9.7 0.00033 45.0 18.1 97 1978-2081 30-138 (265)
194 4fzw_C 1,2-epoxyphenylacetyl-C 88.9 20 0.00068 42.6 20.7 96 1978-2080 36-146 (274)
195 1k8m_A E2 component of branche 88.8 0.23 7.9E-06 49.7 3.4 34 687-720 47-80 (93)
196 3g64_A Putative enoyl-COA hydr 88.8 15 0.00052 43.6 19.7 95 1978-2080 38-148 (279)
197 2a7k_A CARB; crotonase, antibi 88.8 5.6 0.00019 46.5 15.7 96 1979-2081 22-130 (250)
198 3hrx_A Probable enoyl-COA hydr 88.7 0.31 1E-05 57.4 4.9 85 1779-1865 91-190 (254)
199 2k32_A A; NMR {Campylobacter j 88.7 0.34 1.1E-05 50.1 4.6 33 725-757 2-35 (116)
200 3myb_A Enoyl-COA hydratase; ss 88.6 6.1 0.00021 47.3 16.1 95 1979-2080 48-154 (286)
201 2gpr_A Glucose-permease IIA co 88.6 0.27 9.4E-06 53.7 4.0 53 701-754 93-153 (154)
202 3qk8_A Enoyl-COA hydratase ECH 88.6 3.7 0.00013 48.8 14.2 95 1979-2080 35-142 (272)
203 2gtr_A CDY-like, chromodomain 88.4 0.37 1.3E-05 57.0 5.3 85 1779-1865 101-200 (261)
204 3myb_A Enoyl-COA hydratase; ss 88.4 0.46 1.6E-05 57.1 6.1 85 1779-1865 119-217 (286)
205 1pjh_A Enoyl-COA isomerase; EC 88.3 0.34 1.2E-05 57.9 5.0 75 1779-1854 112-202 (280)
206 3he2_A Enoyl-COA hydratase ECH 88.2 10 0.00036 44.8 17.5 96 1978-2080 42-142 (264)
207 3swx_A Probable enoyl-COA hydr 87.9 0.39 1.3E-05 56.9 5.2 84 1779-1864 102-200 (265)
208 3crk_C Dihydrolipoyllysine-res 87.9 0.26 8.9E-06 48.6 3.0 34 687-720 48-82 (87)
209 3hin_A Putative 3-hydroxybutyr 87.8 0.26 8.9E-06 58.8 3.6 88 1779-1868 106-208 (275)
210 4hdt_A 3-hydroxyisobutyryl-COA 87.8 42 0.0014 41.3 23.3 96 1978-2080 30-140 (353)
211 2ppy_A Enoyl-COA hydratase; be 87.7 0.4 1.4E-05 56.8 5.1 86 1779-1866 101-202 (265)
212 4eml_A Naphthoate synthase; 1, 87.7 0.38 1.3E-05 57.4 4.8 86 1779-1866 109-209 (275)
213 3kqf_A Enoyl-COA hydratase/iso 87.5 0.34 1.1E-05 57.5 4.3 87 1779-1867 102-203 (265)
214 3isa_A Putative enoyl-COA hydr 87.5 3.5 0.00012 48.5 12.9 96 1978-2080 28-133 (254)
215 3qxi_A Enoyl-COA hydratase ECH 87.5 0.41 1.4E-05 56.8 5.0 85 1779-1865 102-201 (265)
216 2f6q_A Peroxisomal 3,2-trans-e 87.5 0.51 1.8E-05 56.4 5.8 87 1779-1867 121-222 (280)
217 2jku_A Propionyl-COA carboxyla 87.4 0.081 2.8E-06 53.1 -1.0 33 687-719 62-94 (94)
218 4fzw_C 1,2-epoxyphenylacetyl-C 87.3 0.68 2.3E-05 55.2 6.7 88 1779-1868 111-213 (274)
219 3njd_A Enoyl-COA hydratase; ss 87.2 0.41 1.4E-05 58.7 4.8 86 1779-1866 157-254 (333)
220 3gow_A PAAG, probable enoyl-CO 87.1 0.6 2E-05 55.0 6.0 86 1779-1866 91-191 (254)
221 2vx2_A Enoyl-COA hydratase dom 87.1 20 0.00068 42.9 19.2 96 1979-2082 55-163 (287)
222 3l3s_A Enoyl-COA hydratase/iso 87.0 0.47 1.6E-05 56.2 5.1 86 1779-1866 104-203 (263)
223 3trr_A Probable enoyl-COA hydr 86.8 0.69 2.4E-05 54.6 6.4 86 1779-1866 93-193 (256)
224 3m6n_A RPFF protein; enoyl-COA 86.8 0.6 2.1E-05 56.5 6.0 88 1779-1868 140-242 (305)
225 3ot6_A Enoyl-COA hydratase/iso 86.7 5.2 0.00018 46.3 13.6 93 1979-2080 27-130 (232)
226 2j5g_A ALR4455 protein; enzyme 86.7 7 0.00024 46.3 14.9 94 1979-2080 46-151 (263)
227 2f6q_A Peroxisomal 3,2-trans-e 86.7 10 0.00034 45.3 16.4 97 1978-2082 47-158 (280)
228 3h81_A Enoyl-COA hydratase ECH 86.7 0.39 1.3E-05 57.5 4.1 87 1779-1867 115-216 (278)
229 3qxz_A Enoyl-COA hydratase/iso 86.7 0.71 2.4E-05 54.7 6.4 85 1779-1865 98-197 (265)
230 3p5m_A Enoyl-COA hydratase/iso 86.5 0.73 2.5E-05 54.3 6.4 84 1780-1865 93-191 (255)
231 3i47_A Enoyl COA hydratase/iso 86.5 8.2 0.00028 45.7 15.4 96 1978-2080 25-134 (268)
232 3pea_A Enoyl-COA hydratase/iso 86.4 0.61 2.1E-05 55.1 5.6 87 1779-1867 98-199 (261)
233 3qmj_A Enoyl-COA hydratase, EC 86.3 4.7 0.00016 47.4 13.1 95 1979-2080 28-134 (256)
234 1uiy_A Enoyl-COA hydratase; ly 86.2 27 0.00094 40.7 19.5 95 1979-2080 21-129 (253)
235 3moy_A Probable enoyl-COA hydr 86.1 0.73 2.5E-05 54.6 6.1 85 1779-1865 100-199 (263)
236 3pe8_A Enoyl-COA hydratase; em 86.1 0.39 1.3E-05 56.7 3.7 86 1779-1866 92-192 (256)
237 3t3w_A Enoyl-COA hydratase; ss 86.0 0.43 1.5E-05 57.0 4.0 87 1779-1867 117-216 (279)
238 1szo_A 6-oxocamphor hydrolase; 85.9 6.5 0.00022 46.3 14.0 93 1980-2080 39-142 (257)
239 2ppy_A Enoyl-COA hydratase; be 85.8 27 0.00091 41.2 19.3 95 1979-2080 30-137 (265)
240 4di1_A Enoyl-COA hydratase ECH 85.7 0.77 2.6E-05 54.9 6.0 88 1779-1868 115-217 (277)
241 3gkb_A Putative enoyl-COA hydr 85.6 0.47 1.6E-05 57.0 4.2 86 1779-1866 106-207 (287)
242 3lke_A Enoyl-COA hydratase; ny 85.5 5.8 0.0002 46.9 13.4 96 1978-2080 25-136 (263)
243 1pmr_A Dihydrolipoyl succinylt 85.4 0.23 7.8E-06 48.1 1.0 36 684-719 42-77 (80)
244 3qre_A Enoyl-COA hydratase, EC 85.2 0.58 2E-05 56.5 4.7 84 1779-1864 130-228 (298)
245 2np9_A DPGC; protein inhibitor 84.9 1 3.4E-05 57.2 6.7 89 1779-1869 284-386 (440)
246 3t8b_A 1,4-dihydroxy-2-naphtho 84.8 0.82 2.8E-05 56.1 5.8 86 1779-1866 167-268 (334)
247 3m6n_A RPFF protein; enoyl-COA 84.8 34 0.0012 41.2 19.8 94 1980-2080 59-175 (305)
248 3p5m_A Enoyl-COA hydratase/iso 84.7 19 0.00065 42.2 17.2 95 1979-2080 28-127 (255)
249 2gtr_A CDY-like, chromodomain 84.6 8.8 0.0003 45.2 14.3 97 1979-2082 28-138 (261)
250 2fbm_A Y chromosome chromodoma 84.4 11 0.00038 45.2 15.3 95 1979-2080 46-154 (291)
251 1ax3_A Iiaglc, glucose permeas 84.3 0.47 1.6E-05 52.3 3.0 27 694-720 91-117 (162)
252 2ejm_A Methylcrotonoyl-COA car 84.2 0.65 2.2E-05 46.9 3.8 36 723-758 13-49 (99)
253 1nzy_A Dehalogenase, 4-chlorob 83.5 41 0.0014 39.7 19.5 95 1979-2080 25-135 (269)
254 2dnc_A Pyruvate dehydrogenase 83.5 0.42 1.4E-05 48.3 2.1 35 687-721 50-85 (98)
255 4hdt_A 3-hydroxyisobutyryl-COA 83.4 0.97 3.3E-05 55.8 5.7 84 1780-1865 106-203 (353)
256 2xha_A NUSG, transcription ant 83.2 0.55 1.9E-05 52.9 3.0 44 703-752 85-157 (193)
257 1f3z_A EIIA-GLC, glucose-speci 83.2 1.3 4.4E-05 48.8 5.9 19 702-720 99-117 (161)
258 1y8o_B Dihydrolipoyllysine-res 83.1 0.56 1.9E-05 49.8 2.9 34 687-720 70-104 (128)
259 3rsi_A Putative enoyl-COA hydr 82.9 27 0.00091 41.2 17.5 96 1978-2080 30-137 (265)
260 1gjx_A Pyruvate dehydrogenase; 82.9 0.29 1E-05 47.3 0.6 34 687-720 44-77 (81)
261 2dne_A Dihydrolipoyllysine-res 82.8 0.51 1.7E-05 48.6 2.4 34 687-720 50-84 (108)
262 1dci_A Dienoyl-COA isomerase; 82.8 37 0.0013 40.1 18.8 97 1978-2082 25-144 (275)
263 3fpp_A Macrolide-specific effl 82.7 0.82 2.8E-05 55.7 4.6 56 701-757 9-65 (341)
264 2ej5_A Enoyl-COA hydratase sub 82.6 38 0.0013 39.7 18.6 96 1978-2080 24-129 (257)
265 4fzw_A 2,3-dehydroadipyl-COA h 81.9 38 0.0013 39.8 18.3 95 1979-2080 27-130 (258)
266 2pbp_A Enoyl-COA hydratase sub 81.7 24 0.00083 41.3 16.5 95 1979-2081 27-131 (258)
267 1y81_A Conserved hypothetical 81.7 2.1 7.2E-05 45.8 6.7 108 48-167 14-127 (138)
268 1szo_A 6-oxocamphor hydrolase; 81.6 1.1 3.8E-05 52.8 5.0 85 1779-1866 108-208 (257)
269 3lao_A Enoyl-COA hydratase/iso 81.4 5.2 0.00018 47.1 10.6 84 1779-1864 105-203 (258)
270 2a7k_A CARB; crotonase, antibi 81.3 0.85 2.9E-05 53.5 3.9 87 1779-1867 94-194 (250)
271 4f47_A Enoyl-COA hydratase ECH 81.3 15 0.00051 43.7 14.6 96 1978-2080 41-150 (278)
272 1sg4_A 3,2-trans-enoyl-COA iso 81.3 5.1 0.00017 47.2 10.5 94 1979-2080 26-134 (260)
273 3hp0_A Putative polyketide bio 81.0 10 0.00035 45.0 13.0 95 1979-2080 29-135 (267)
274 1uiy_A Enoyl-COA hydratase; ly 80.9 0.92 3.2E-05 53.3 4.0 36 1779-1814 94-129 (253)
275 2f1m_A Acriflavine resistance 80.8 0.96 3.3E-05 53.5 4.1 47 710-757 9-56 (277)
276 3h81_A Enoyl-COA hydratase ECH 80.8 25 0.00085 41.9 16.3 95 1978-2080 46-150 (278)
277 3qre_A Enoyl-COA hydratase, EC 80.7 13 0.00044 44.8 13.9 98 1978-2082 51-167 (298)
278 2cby_A ATP-dependent CLP prote 80.7 1.7 5.8E-05 49.7 6.0 85 1780-1864 86-203 (208)
279 2ej5_A Enoyl-COA hydratase sub 80.6 0.86 2.9E-05 53.7 3.6 85 1779-1865 94-193 (257)
280 3ic5_A Putative saccharopine d 80.4 2.7 9.2E-05 42.1 6.8 93 46-160 3-97 (118)
281 3tlf_A Enoyl-COA hydratase/iso 80.1 13 0.00044 44.1 13.5 96 1978-2080 32-145 (274)
282 1wz8_A Enoyl-COA hydratase; ly 79.9 0.93 3.2E-05 53.7 3.6 86 1779-1866 104-204 (264)
283 2j5i_A P-hydroxycinnamoyl COA 79.9 1.1 3.7E-05 53.5 4.1 86 1779-1866 106-206 (276)
284 3qmj_A Enoyl-COA hydratase, EC 79.7 1.1 3.8E-05 52.7 4.1 86 1779-1866 99-199 (256)
285 2q35_A CURF; crotonase, lyase; 79.7 1 3.5E-05 52.7 3.7 88 1779-1868 90-192 (243)
286 2fbm_A Y chromosome chromodoma 79.6 1.1 3.9E-05 53.7 4.2 85 1779-1865 119-218 (291)
287 2duw_A Putative COA-binding pr 79.5 2.8 9.6E-05 45.1 6.9 107 49-167 14-128 (145)
288 3r6h_A Enoyl-COA hydratase, EC 79.4 1 3.5E-05 52.3 3.7 86 1779-1866 95-195 (233)
289 2pbp_A Enoyl-COA hydratase sub 79.4 1 3.6E-05 53.0 3.8 85 1779-1865 95-194 (258)
290 3t89_A 1,4-dihydroxy-2-naphtho 79.3 22 0.00075 42.6 15.3 96 1978-2080 49-158 (289)
291 1mj3_A Enoyl-COA hydratase, mi 79.3 1 3.4E-05 53.3 3.6 37 1779-1815 97-133 (260)
292 3pe8_A Enoyl-COA hydratase; em 79.2 11 0.00036 44.5 12.3 96 1978-2080 30-127 (256)
293 1nzy_A Dehalogenase, 4-chlorob 79.1 1 3.5E-05 53.5 3.6 84 1779-1864 100-198 (269)
294 3rrv_A Enoyl-COA hydratase/iso 79.0 1.2 4E-05 53.3 4.0 36 1779-1814 122-157 (276)
295 3fdu_A Putative enoyl-COA hydr 78.9 1.1 3.9E-05 53.1 3.9 73 1779-1852 99-186 (266)
296 3rsi_A Putative enoyl-COA hydr 78.9 1.2 4.2E-05 52.6 4.2 85 1779-1865 102-201 (265)
297 1ef8_A Methylmalonyl COA decar 78.9 1.1 3.6E-05 53.1 3.6 37 1779-1815 96-132 (261)
298 3hin_A Putative 3-hydroxybutyr 78.8 17 0.0006 43.1 14.1 95 1979-2082 38-143 (275)
299 3moy_A Probable enoyl-COA hydr 78.5 25 0.00085 41.5 15.2 96 1978-2080 31-135 (263)
300 3lnn_A Membrane fusion protein 78.4 0.96 3.3E-05 55.5 3.2 59 699-757 31-91 (359)
301 4f47_A Enoyl-COA hydratase ECH 78.4 1.2 4.1E-05 53.1 3.9 84 1779-1864 115-213 (278)
302 2d59_A Hypothetical protein PH 78.2 2.3 7.8E-05 45.8 5.7 116 34-167 14-135 (144)
303 2vx2_A Enoyl-COA hydratase dom 78.2 1.1 3.8E-05 53.7 3.6 84 1779-1865 126-224 (287)
304 3t89_A 1,4-dihydroxy-2-naphtho 78.1 1.1 3.9E-05 53.7 3.6 85 1779-1865 123-222 (289)
305 2uzf_A Naphthoate synthase; ly 77.8 1.1 3.7E-05 53.4 3.3 36 1779-1814 107-142 (273)
306 3tlf_A Enoyl-COA hydratase/iso 77.7 1.2 4.3E-05 52.8 3.8 87 1779-1867 110-212 (274)
307 3oc7_A Enoyl-COA hydratase; se 77.7 1.1 3.8E-05 53.0 3.3 37 1779-1815 108-144 (267)
308 3gkb_A Putative enoyl-COA hydr 77.6 7.9 0.00027 46.4 10.7 95 1979-2080 30-142 (287)
309 1wz8_A Enoyl-COA hydratase; ly 77.5 21 0.0007 42.1 14.1 94 1979-2080 32-139 (264)
310 3r9q_A Enoyl-COA hydratase/iso 77.4 1.2 4.2E-05 52.6 3.6 84 1779-1864 101-199 (262)
311 3fdu_A Putative enoyl-COA hydr 77.3 21 0.00071 42.2 14.0 97 1978-2081 26-135 (266)
312 3he2_A Enoyl-COA hydratase ECH 77.2 1.3 4.3E-05 52.7 3.6 85 1779-1865 107-206 (264)
313 3h0u_A Putative enoyl-COA hydr 77.1 9.6 0.00033 45.7 11.2 95 1979-2080 29-139 (289)
314 3h0u_A Putative enoyl-COA hydr 77.0 1.3 4.5E-05 53.2 3.7 85 1779-1865 103-203 (289)
315 3g64_A Putative enoyl-COA hydr 77.0 1.2 4.1E-05 53.2 3.3 85 1779-1865 113-213 (279)
316 3t8b_A 1,4-dihydroxy-2-naphtho 77.0 30 0.001 42.4 15.6 97 1979-2082 79-205 (334)
317 1sg4_A 3,2-trans-enoyl-COA iso 76.7 1.3 4.3E-05 52.4 3.4 86 1779-1866 97-199 (260)
318 1hzd_A AUH, AU-binding protein 76.7 1.2 4.2E-05 52.9 3.3 88 1779-1867 105-210 (272)
319 3sll_A Probable enoyl-COA hydr 76.7 1.3 4.5E-05 53.2 3.6 85 1779-1865 123-223 (290)
320 4fzw_A 2,3-dehydroadipyl-COA h 76.5 1.4 4.6E-05 52.1 3.6 86 1780-1867 96-196 (258)
321 3r9t_A ECHA1_1; ssgcid, seattl 76.3 1.4 4.6E-05 52.4 3.5 84 1779-1864 101-199 (267)
322 3ot6_A Enoyl-COA hydratase/iso 76.0 1.3 4.4E-05 51.5 3.2 88 1779-1868 94-197 (232)
323 3qk8_A Enoyl-COA hydratase ECH 75.8 1.4 4.6E-05 52.5 3.3 86 1779-1866 107-207 (272)
324 2j5g_A ALR4455 protein; enzyme 75.8 2 6.9E-05 50.8 4.8 84 1779-1865 117-216 (263)
325 3t3w_A Enoyl-COA hydratase; ss 75.8 27 0.00092 41.5 14.5 95 1978-2080 41-152 (279)
326 1ef8_A Methylmalonyl COA decar 75.7 9.9 0.00034 44.7 10.7 94 1979-2080 26-131 (261)
327 3d4r_A Domain of unknown funct 75.7 2.3 8E-05 46.5 4.8 49 690-738 103-152 (169)
328 3njd_A Enoyl-COA hydratase; ss 75.6 14 0.00046 45.3 12.2 99 1978-2083 56-195 (333)
329 4eml_A Naphthoate synthase; 1, 75.4 8.6 0.00029 45.7 10.1 96 1978-2080 31-144 (275)
330 2j5i_A P-hydroxycinnamoyl COA 75.2 67 0.0023 38.0 17.7 95 1979-2080 31-141 (276)
331 3bpt_A 3-hydroxyisobutyryl-COA 74.0 36 0.0012 42.0 15.5 94 1979-2080 28-137 (363)
332 1pjh_A Enoyl-COA isomerase; EC 74.0 36 0.0012 40.4 15.0 96 1978-2080 30-148 (280)
333 1y7o_A ATP-dependent CLP prote 73.6 3.3 0.00011 47.7 5.7 39 1780-1818 104-144 (218)
334 2xha_A NUSG, transcription ant 73.3 2.1 7.1E-05 48.3 3.8 30 701-736 23-52 (193)
335 3zwc_A Peroxisomal bifunctiona 73.0 3.1 0.00011 56.1 6.1 86 1780-1866 107-209 (742)
336 3ju1_A Enoyl-COA hydratase/iso 72.6 22 0.00077 44.6 13.3 96 1978-2080 63-177 (407)
337 1iuk_A Hypothetical protein TT 72.3 2.1 7.2E-05 45.9 3.4 108 48-167 13-128 (140)
338 3bpt_A 3-hydroxyisobutyryl-COA 72.0 2 6.7E-05 53.3 3.6 38 1779-1816 102-139 (363)
339 1wdk_A Fatty oxidation complex 71.9 45 0.0015 45.0 16.8 95 1979-2080 30-138 (715)
340 1vf7_A Multidrug resistance pr 71.9 1.9 6.4E-05 53.4 3.3 55 701-756 21-76 (369)
341 3i6i_A Putative leucoanthocyan 71.8 14 0.00048 44.6 11.0 123 49-187 11-154 (346)
342 3ff4_A Uncharacterized protein 71.8 5 0.00017 42.2 6.0 109 48-168 4-117 (122)
343 3our_B EIIA, phosphotransferas 71.1 3.2 0.00011 46.4 4.6 20 738-757 121-140 (183)
344 2q35_A CURF; crotonase, lyase; 70.9 12 0.0004 43.7 9.6 93 1978-2080 24-125 (243)
345 3nkl_A UDP-D-quinovosamine 4-d 70.7 5.8 0.0002 41.6 6.4 96 48-166 4-103 (141)
346 3rrv_A Enoyl-COA hydratase/iso 70.3 16 0.00053 43.6 10.7 96 1978-2080 49-157 (276)
347 1wdk_A Fatty oxidation complex 68.7 4.9 0.00017 54.2 6.5 87 1779-1867 103-204 (715)
348 3lu0_D DNA-directed RNA polyme 68.6 3.3 0.00011 57.9 4.8 43 701-745 1003-1046(1407)
349 1mj3_A Enoyl-COA hydratase, mi 67.7 47 0.0016 39.0 13.9 97 1978-2081 28-133 (260)
350 4dk0_A Putative MACA; alpha-ha 66.8 1.2 3.9E-05 54.9 -0.1 55 702-757 11-66 (369)
351 3ju1_A Enoyl-COA hydratase/iso 66.6 2.6 8.8E-05 53.1 3.0 38 1779-1816 142-179 (407)
352 2auk_A DNA-directed RNA polyme 65.8 4 0.00014 46.2 4.1 45 701-747 64-109 (190)
353 2w3p_A Benzoyl-COA-dihydrodiol 65.4 27 0.00092 45.3 11.8 95 1979-2080 53-166 (556)
354 3our_B EIIA, phosphotransferas 65.3 6.7 0.00023 43.9 5.6 29 692-720 111-139 (183)
355 3swx_A Probable enoyl-COA hydr 65.1 19 0.00064 42.5 9.9 97 1978-2081 30-138 (265)
356 3ne5_B Cation efflux system pr 65.0 4.5 0.00015 50.8 4.8 56 702-757 98-156 (413)
357 2uzf_A Naphthoate synthase; ly 64.8 34 0.0012 40.5 12.0 95 1979-2080 35-142 (273)
358 3rst_A Signal peptide peptidas 64.6 3.4 0.00012 48.2 3.3 38 1780-1817 80-117 (240)
359 2r6j_A Eugenol synthase 1; phe 63.3 20 0.00068 42.6 9.8 122 46-187 9-150 (318)
360 3dva_I Dihydrolipoyllysine-res 62.2 1.6 5.5E-05 55.3 0.0 43 679-721 37-79 (428)
361 2w3p_A Benzoyl-COA-dihydrodiol 60.5 4.6 0.00016 52.1 3.7 85 1779-1865 129-233 (556)
362 3keo_A Redox-sensing transcrip 59.9 4.9 0.00017 46.2 3.5 108 3-138 46-155 (212)
363 2xhc_A Transcription antitermi 58.8 6 0.00021 48.8 4.2 46 701-752 63-138 (352)
364 2bco_A Succinylglutamate desuc 58.8 6.3 0.00021 48.6 4.4 64 690-759 266-331 (350)
365 3oc7_A Enoyl-COA hydratase; se 58.0 23 0.00079 41.7 8.9 96 1978-2080 32-143 (267)
366 2f6i_A ATP-dependent CLP prote 58.0 11 0.00038 43.3 6.0 37 1781-1817 98-136 (215)
367 3qxz_A Enoyl-COA hydratase/iso 57.0 16 0.00055 43.1 7.3 94 1979-2080 29-133 (265)
368 3lao_A Enoyl-COA hydratase/iso 56.4 21 0.00071 42.0 8.1 95 1979-2080 34-140 (258)
369 3r6d_A NAD-dependent epimerase 53.7 21 0.00071 40.1 7.3 30 46-75 3-34 (221)
370 3dhn_A NAD-dependent epimerase 52.9 22 0.00074 39.9 7.3 73 47-140 3-76 (227)
371 1yg6_A ATP-dependent CLP prote 52.8 15 0.00052 41.4 5.9 39 1780-1818 85-125 (193)
372 3r9q_A Enoyl-COA hydratase/iso 52.6 69 0.0023 37.7 11.7 95 1979-2080 33-136 (262)
373 1hzd_A AUH, AU-binding protein 52.2 27 0.00093 41.3 8.3 97 1979-2082 34-142 (272)
374 3fwz_A Inner membrane protein 52.1 5.5 0.00019 42.0 2.1 30 46-75 5-34 (140)
375 2xhc_A Transcription antitermi 51.7 6.6 0.00022 48.4 2.9 44 703-752 125-197 (352)
376 1zko_A Glycine cleavage system 51.3 6.1 0.00021 42.4 2.2 43 678-720 65-114 (136)
377 1hdo_A Biliverdin IX beta redu 50.8 49 0.0017 36.0 9.6 27 49-75 4-31 (206)
378 1zy8_K Pyruvate dehydrogenase 50.6 3.3 0.00011 48.2 0.0 37 684-720 43-80 (229)
379 1lss_A TRK system potassium up 50.4 20 0.00068 36.8 6.0 27 49-75 5-31 (140)
380 3qwd_A ATP-dependent CLP prote 50.2 19 0.00066 41.0 6.2 38 1780-1817 86-125 (203)
381 3llv_A Exopolyphosphatase-rela 49.7 8.7 0.0003 40.2 3.1 28 48-75 6-33 (141)
382 2yy7_A L-threonine dehydrogena 49.7 29 0.001 40.7 8.0 71 48-138 2-75 (312)
383 2hmt_A YUAA protein; RCK, KTN, 48.6 12 0.00042 38.5 4.1 28 48-75 6-33 (144)
384 3m2p_A UDP-N-acetylglucosamine 48.1 50 0.0017 38.9 9.8 29 47-75 1-30 (311)
385 1qyd_A Pinoresinol-lariciresin 47.8 51 0.0017 38.7 9.7 28 48-75 4-32 (313)
386 3sc6_A DTDP-4-dehydrorhamnose 47.1 20 0.00067 41.8 5.9 56 50-138 7-63 (287)
387 3n6x_A Putative glutathionylsp 46.0 16 0.00056 46.6 5.2 60 217-279 350-411 (474)
388 1qyc_A Phenylcoumaran benzylic 46.0 37 0.0013 39.9 8.1 121 48-187 4-148 (308)
389 3enk_A UDP-glucose 4-epimerase 45.1 57 0.0019 38.8 9.7 76 47-138 4-85 (341)
390 4egb_A DTDP-glucose 4,6-dehydr 44.8 76 0.0026 37.8 10.8 80 48-140 24-107 (346)
391 2c20_A UDP-glucose 4-epimerase 44.2 42 0.0014 39.8 8.3 73 48-138 1-74 (330)
392 2wtb_A MFP2, fatty acid multif 44.0 11 0.00036 51.0 3.3 86 1779-1866 102-202 (725)
393 3qvo_A NMRA family protein; st 43.3 31 0.001 39.2 6.6 30 46-75 21-52 (236)
394 3abi_A Putative uncharacterize 43.1 19 0.00065 44.3 5.2 121 43-192 13-133 (365)
395 3p2l_A ATP-dependent CLP prote 42.8 26 0.00091 39.8 5.8 38 1780-1817 89-128 (201)
396 2g1u_A Hypothetical protein TM 42.7 51 0.0018 35.0 7.9 28 48-75 19-46 (155)
397 2q1w_A Putative nucleotide sug 42.3 45 0.0015 39.9 8.2 77 48-140 21-98 (333)
398 1n7h_A GDP-D-mannose-4,6-dehyd 42.1 60 0.0021 39.4 9.4 78 46-138 26-113 (381)
399 3fmc_A Putative succinylglutam 41.6 15 0.00052 45.5 4.0 31 726-756 292-322 (368)
400 3trr_A Probable enoyl-COA hydr 41.3 2E+02 0.0069 33.5 13.3 94 1978-2080 28-128 (256)
401 3na6_A Succinylglutamate desuc 41.1 18 0.00061 44.2 4.4 34 724-757 257-290 (331)
402 2io8_A Bifunctional glutathion 40.8 15 0.00051 48.6 3.9 101 147-280 474-574 (619)
403 3zwc_A Peroxisomal bifunctiona 40.1 2E+02 0.0067 39.0 14.4 102 1979-2089 42-148 (742)
404 1t2a_A GDP-mannose 4,6 dehydra 39.1 79 0.0027 38.3 9.8 79 47-140 23-111 (375)
405 4id9_A Short-chain dehydrogena 38.4 64 0.0022 38.5 8.7 68 47-140 18-86 (347)
406 2pzm_A Putative nucleotide sug 38.0 53 0.0018 39.2 7.9 76 49-140 21-97 (330)
407 3dfz_A SIRC, precorrin-2 dehyd 37.1 22 0.00077 41.0 4.1 27 49-75 32-58 (223)
408 4hv4_A UDP-N-acetylmuramate--L 36.3 38 0.0013 43.5 6.5 29 47-75 21-50 (494)
409 3f8d_A Thioredoxin reductase ( 35.6 46 0.0016 38.9 6.7 29 47-75 14-42 (323)
410 1tg6_A Putative ATP-dependent 35.6 38 0.0013 40.4 5.9 38 1780-1817 141-180 (277)
411 3ruf_A WBGU; rossmann fold, UD 35.1 56 0.0019 39.1 7.4 42 32-75 11-53 (351)
412 1rpn_A GDP-mannose 4,6-dehydra 35.0 93 0.0032 36.8 9.3 78 46-138 12-93 (335)
413 3c1o_A Eugenol synthase; pheny 35.0 1E+02 0.0034 36.4 9.6 121 47-187 3-148 (321)
414 1ek6_A UDP-galactose 4-epimera 35.0 80 0.0027 37.6 8.8 29 47-75 1-30 (348)
415 2gas_A Isoflavone reductase; N 34.5 1E+02 0.0036 35.9 9.5 119 48-187 2-147 (307)
416 4ina_A Saccharopine dehydrogen 34.3 49 0.0017 41.4 6.9 123 48-192 1-141 (405)
417 2c5a_A GDP-mannose-3', 5'-epim 34.2 90 0.0031 38.0 9.2 29 47-75 28-57 (379)
418 3slg_A PBGP3 protein; structur 33.9 82 0.0028 38.0 8.7 28 48-75 24-53 (372)
419 2pk3_A GDP-6-deoxy-D-LYXO-4-he 33.8 72 0.0025 37.5 8.1 74 45-140 9-83 (321)
420 3s2u_A UDP-N-acetylglucosamine 32.4 61 0.0021 39.6 7.2 29 47-75 1-34 (365)
421 3it5_A Protease LASA; metallop 32.3 50 0.0017 37.0 5.8 56 687-756 48-104 (182)
422 3qxi_A Enoyl-COA hydratase ECH 31.5 1.8E+02 0.0062 34.1 10.8 95 1979-2082 37-139 (265)
423 1orr_A CDP-tyvelose-2-epimeras 31.0 1.1E+02 0.0039 36.2 9.2 75 48-138 1-80 (347)
424 1rkx_A CDP-glucose-4,6-dehydra 30.6 84 0.0029 37.7 8.0 74 49-138 10-87 (357)
425 2ydy_A Methionine adenosyltran 30.1 47 0.0016 39.2 5.5 28 48-75 2-30 (315)
426 2wtb_A MFP2, fatty acid multif 29.4 56 0.0019 44.1 6.6 95 1979-2080 29-137 (725)
427 2z1m_A GDP-D-mannose dehydrata 29.3 1.3E+02 0.0046 35.4 9.4 76 49-140 4-84 (345)
428 1id1_A Putative potassium chan 29.0 68 0.0023 33.9 6.0 27 49-75 4-30 (153)
429 3ay3_A NAD-dependent epimerase 28.8 48 0.0016 38.2 5.2 72 47-141 1-73 (267)
430 3uog_A Alcohol dehydrogenase; 28.6 60 0.0021 39.6 6.3 83 40-140 182-266 (363)
431 2x4g_A Nucleoside-diphosphate- 28.3 1.2E+02 0.0039 36.1 8.6 26 50-75 15-41 (342)
432 3l4b_C TRKA K+ channel protien 27.2 49 0.0017 37.2 4.8 26 50-75 2-27 (218)
433 2wm3_A NMRA-like family domain 27.1 73 0.0025 37.3 6.4 28 48-75 5-34 (299)
434 1db3_A GDP-mannose 4,6-dehydra 26.7 1.2E+02 0.0043 36.3 8.6 77 48-140 1-87 (372)
435 1sb8_A WBPP; epimerase, 4-epim 26.4 1.1E+02 0.0038 36.6 8.0 28 48-75 27-55 (352)
436 2ywr_A Phosphoribosylglycinami 25.9 1.7E+02 0.0056 33.5 8.8 80 48-141 1-91 (216)
437 1p9l_A Dihydrodipicolinate red 25.8 1.7E+02 0.0059 34.1 9.1 77 50-144 2-82 (245)
438 3e8x_A Putative NAD-dependent 25.7 1.9E+02 0.0064 32.5 9.3 28 49-76 22-50 (236)
439 3l9w_A Glutathione-regulated p 25.6 18 0.00062 45.5 0.9 27 49-75 5-31 (413)
440 3r9t_A ECHA1_1; ssgcid, seattl 25.6 1.4E+02 0.0049 35.0 8.5 94 1978-2080 30-136 (267)
441 2dt5_A AT-rich DNA-binding pro 24.6 32 0.0011 39.4 2.5 33 34-66 66-98 (211)
442 2nu8_A Succinyl-COA ligase [AD 24.3 2E+02 0.0068 34.2 9.5 27 48-74 7-34 (288)
443 1mio_B Nitrogenase molybdenum 24.2 1.7E+02 0.0057 37.2 9.3 37 35-75 303-339 (458)
444 4gx0_A TRKA domain protein; me 24.1 66 0.0023 41.8 5.8 43 33-75 333-375 (565)
445 3ius_A Uncharacterized conserv 23.9 43 0.0015 38.9 3.6 30 46-75 3-32 (286)
446 3eag_A UDP-N-acetylmuramate:L- 23.9 75 0.0026 38.4 5.8 28 48-75 4-32 (326)
447 2akl_A PHNA-like protein PA012 23.5 19 0.00063 38.0 0.3 23 1540-1563 30-52 (138)
448 3kkj_A Amine oxidase, flavin-c 23.4 43 0.0015 36.7 3.3 28 48-75 2-29 (336)
449 1vl0_A DTDP-4-dehydrorhamnose 23.3 1E+02 0.0035 35.8 6.7 61 47-140 11-72 (292)
450 1e6u_A GDP-fucose synthetase; 23.3 1.1E+02 0.0039 35.8 7.2 60 49-140 4-64 (321)
451 1pjq_A CYSG, siroheme synthase 23.0 72 0.0025 40.6 5.6 27 49-75 13-39 (457)
452 3r9u_A Thioredoxin reductase; 22.9 81 0.0028 36.7 5.7 29 47-75 3-31 (315)
453 3pdi_B Nitrogenase MOFE cofact 22.8 2.7E+02 0.0091 35.4 10.8 78 35-138 304-382 (458)
454 4ea9_A Perosamine N-acetyltran 22.8 83 0.0028 35.5 5.6 30 46-75 10-39 (220)
455 3tuf_B Stage II sporulation pr 22.8 93 0.0032 36.4 6.0 60 689-757 95-155 (245)
456 2axq_A Saccharopine dehydrogen 22.7 76 0.0026 40.6 5.7 118 47-192 22-144 (467)
457 2p5y_A UDP-glucose 4-epimerase 22.4 1.2E+02 0.0041 35.5 7.1 71 50-138 2-73 (311)
458 3pdi_A Nitrogenase MOFE cofact 21.9 88 0.003 40.1 6.1 85 34-138 322-408 (483)
459 3fbs_A Oxidoreductase; structu 21.7 55 0.0019 37.8 3.9 29 47-75 1-29 (297)
460 2q1s_A Putative nucleotide sug 21.6 94 0.0032 37.8 6.1 27 49-75 33-61 (377)
461 3rft_A Uronate dehydrogenase; 21.6 1.5E+02 0.0051 34.2 7.6 71 48-141 3-74 (267)
462 3e48_A Putative nucleoside-dip 21.5 1.4E+02 0.0047 34.6 7.3 26 50-75 2-29 (289)
463 3cdx_A Succinylglutamatedesucc 21.4 81 0.0028 38.7 5.4 33 724-756 267-299 (354)
464 3l9t_A Putative uncharacterize 21.2 6E+02 0.021 29.7 12.1 54 908-963 32-86 (240)
465 2hsi_A Putative peptidase M23; 21.1 60 0.0021 38.8 4.0 63 687-758 190-253 (282)
466 3pwf_A Rubrerythrin; non heme 20.7 32 0.0011 38.1 1.5 29 1536-1568 138-166 (170)
467 2bw0_A 10-FTHFDH, 10-formyltet 20.7 1.8E+02 0.0063 35.3 8.3 82 49-141 23-110 (329)
468 3ef6_A Toluene 1,2-dioxygenase 20.7 55 0.0019 40.6 3.8 27 47-73 1-27 (410)
469 3nyy_A Putative glycyl-glycine 20.7 99 0.0034 36.4 5.7 64 688-758 140-203 (252)
470 4f3y_A DHPR, dihydrodipicolina 20.5 1.1E+02 0.0037 36.4 6.0 22 49-70 8-30 (272)
471 3o9z_A Lipopolysaccaride biosy 20.3 1.3E+02 0.0045 36.0 6.9 92 48-160 3-100 (312)
472 3slu_A M23 peptidase domain pr 20.2 3.1E+02 0.011 34.0 10.2 64 686-758 255-318 (371)
473 3jyn_A Quinone oxidoreductase; 20.1 96 0.0033 37.1 5.7 84 40-141 133-219 (325)
474 2dq4_A L-threonine 3-dehydroge 20.0 81 0.0028 38.0 5.0 80 42-140 160-240 (343)
No 1
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A
Probab=100.00 E-value=2.3e-166 Score=1588.35 Aligned_cols=749 Identities=48% Similarity=0.807 Sum_probs=660.4
Q ss_pred cccCCccccccccCchhhhhhhhhcccCCccccccCCCCCCCccccCCCcccchhhhhcccCccCCCCcchhHHHHHHHH
Q 000086 1495 GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFETA 1574 (2304)
Q Consensus 1495 g~~~~~~~~~pY~~~~~~~~kr~~a~~~~t~y~yd~p~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1574 (2304)
|||||+|+++|||+|+++|+||++||++||||+||||+ ||+++
T Consensus 1 g~~~~~~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~-------------------------------------l~~~~ 43 (758)
T 3k8x_A 1 GSMHLRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPE-------------------------------------LFRQA 43 (758)
T ss_dssp ----CCCCCCSSCCHHHHSHHHHHHHHTTSCCGGGHHH-------------------------------------HHHHH
T ss_pred CCcCCcccCCCCCCcchhhHHHHHHHHcCCeeecchHH-------------------------------------HHHHH
Confidence 79999999999999999999999999999999999999 99999
Q ss_pred HHHhHhhhCCCCCCCCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEecccc
Q 000086 1575 LEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFK 1654 (2304)
Q Consensus 1575 ~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~ 1654 (2304)
+.++|++.. .....|++++++.||+||+ +| +|.+++|+||.|++|||+|.++++||||++|++|+|++||+||+
T Consensus 44 ~~~~w~~~~-~~~~~~~~~~~~~el~l~~-~~----~L~~~~r~~G~nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t~~ 117 (758)
T 3k8x_A 44 SSSQWKNFS-ADVKLTDDFFISNELIEDE-NG----ELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFK 117 (758)
T ss_dssp HHHHHHHHC-TTCCCCGGGEEEEEEEECT-TS----CEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSG
T ss_pred HHHHHHhcc-ccccCCCccceEEEEEEcC-CC----CeehhhcCCCCCCceEEEEEEEECCccccCCeEEEEEEECCccc
Confidence 999997764 3345778999999999998 77 89999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhc-----
Q 000086 1655 AGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG----- 1729 (2304)
Q Consensus 1655 ~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~----- 1729 (2304)
+||||+.+++|+.|++|+|+++|+|+|+|++|||||||++++++++|+|+|+|+.+|.+||+|||+++++|++++
T Consensus 118 gGS~G~~~~eKi~Ra~e~A~~~~lPvI~l~dSGGARmqe~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~ 197 (758)
T 3k8x_A 118 IGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKE 197 (758)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCG
T ss_pred cccCcHHHHHHHHHHHHHHHHcCCCEEEEecCCCcCccccchhccccccccccccchhcccceeccCHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC
Q 000086 1730 SSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD 1809 (2304)
Q Consensus 1730 ~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~ 1809 (2304)
++++.+.++ ++||.||+|++|+|+++|+||+|+++||+|||+||+||++||||++|||||+|||||+++|||++||+++
T Consensus 198 ~~vi~~~~~-~~ge~r~~I~~I~G~~~~~gv~~l~~sG~iag~~s~a~~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~ 276 (758)
T 3k8x_A 198 NSVLTERTV-INGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG 276 (758)
T ss_dssp GGEEEEEEE-ETTEEEEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHTTSCEEEEECSCEETHHHHHHHHTCEEEEETT
T ss_pred ccceeeeec-cCCceeeeEeeeeccccchhhhhccccchhhhhhhhhhcCCCEEEEEccCCchHHHHHHhhCCEEEEECC
Confidence 678888887 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEecChHHHHHhhcccccccccccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCC
Q 000086 1810 QPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPV 1889 (2304)
Q Consensus 1810 ~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~ 1889 (2304)
++||||||++|++++|+++|+|+++|||+++|.+||++|++++||.++++.||+||||+|.++.+++|..++.||++|.+
T Consensus 277 s~ifltGP~vIk~~tGeeV~~s~eeLGGA~vh~~sGvad~va~dd~eal~~ir~lLsyLP~~~~~~~p~~~~~dp~dr~~ 356 (758)
T 3k8x_A 277 QPIILTGAPAINKMLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPV 356 (758)
T ss_dssp CCEESSCHHHHHHHHTSCCCSCTHHHHSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCSSCSCSCC
T ss_pred ceEEEeCHHHHHHHhCCccccCchhcchhhHHHhcCCeeEEecCHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC--CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCC
Q 000086 1890 EYLPE--NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQL 1967 (2304)
Q Consensus 1890 ~~~P~--~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p 1967 (2304)
+++|. ++||+|++|+++.|+.+ |++||||+++|+|++++||+++|||+|||+|+|||||||+++++++.+||||+||
T Consensus 357 ~~vP~~~~pYD~R~vIa~~~d~~~-~~~givD~~sF~E~~~~~a~~iVtG~ARl~G~pVGVIAn~~~~~~~~~padP~~p 435 (758)
T 3k8x_A 357 DFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANP 435 (758)
T ss_dssp CCCCCSSSCCCHHHHHHCEEETTE-EECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTST
T ss_pred ccCCCCCCCCCHHHHHhccccccc-ccceeecCCceEEEcCCccccEEEEEEEECCEEEEEEEEccccccccCcccccCc
Confidence 99998 99999999999988877 9999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1968 DSHERVVPQAGQVWFPDSATKTAQALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1968 ~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
++.|++..++||+|+|++++|+||||++|++ |+||||+|+||+||++|.++|+.|++++||++++++++++||+|++|+
T Consensus 436 ~~~e~~~~~~gG~l~pe~a~KaArfI~lcd~~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~ 515 (758)
T 3k8x_A 436 NSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIP 515 (758)
T ss_dssp TCCCEEEEECTTEECHHHHHHHHHHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred chhhhHHhhcCCCCCHHHHHHHHHHHHHhhhccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHH
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMV 2126 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~ 2126 (2304)
|+|+++||||++|++++|+|+|++||||+|+++||+|||+|+|+||+++++++|+|+||+|++|++++++. +++.+++
T Consensus 516 RkGe~~GGA~~am~~~~~ad~~~v~Awp~A~isVM~pEgaa~Il~r~~~~~~~m~r~d~~~~~l~~~~~~~--~~~~~~~ 593 (758)
T 3k8x_A 516 PTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRELRSQLSNK--SLAPEVH 593 (758)
T ss_dssp TTCEEETHHHHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCSCCCCC----------------
T ss_pred cCCccchHHHHHhCcccCCCHHHHhcCCCCEEEccCHHHHHHHHhcchHHHHHHHhcCHHHHHHHHHhhhc--cCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887 6667889
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Q 000086 2127 ESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLT 2206 (2304)
Q Consensus 2127 ~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l~e~~~~~~~~~~~~~~~~ 2206 (2304)
++++++|++||++|+|+|+|+|++||||||||+||++||+|++||+|+++|+||||||||||+|++++++|.++++ .+|
T Consensus 594 ~~~~~~~~~re~~l~p~y~qva~~fadlHd~~~rm~~~g~i~~~~~w~~~r~~f~~rlrr~l~e~~~~~~~~~~~~-~~~ 672 (758)
T 3k8x_A 594 QQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQVG-EAS 672 (758)
T ss_dssp --------------HHHHHHHHHHHHHTTSBHHHHHHHTCSSEEECGGGHHHHHHHHHHHHHHHHHHHHHHHTSSS-CCC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcHHHHHhhCccccccchHHhHHHHHHHHHHHHhHHHHHHHHHhhCc-ccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 479
Q ss_pred HHHHHHHHHHhhhccccccccCCCccCchhHHHhhc-CchHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHHHHHHHh
Q 000086 2207 HKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD-DSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLS 2285 (2304)
Q Consensus 2207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2285 (2304)
+.+++++|++||.++ ..|+||++|++|++ +.+.++++|++||.+++.++|.++++++ ++.+++ |+.++++
T Consensus 673 ~~~~~~~l~~w~~~~-------~~w~~d~~~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 743 (758)
T 3k8x_A 673 RLEKIARIRSWYPAS-------VDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRSD-HDNAID-GLSEVIK 743 (758)
T ss_dssp HHHHHHHHHTTSCTT-------SCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------------------------
T ss_pred HHHHHHHHHHHhhcc-------CCccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHH-HHHHHHH
Confidence 999999999998643 24999999999999 8899999999999999999999998888 888894 9999999
Q ss_pred cCCHHHHHHHHHHHH
Q 000086 2286 KVDPSCREQLIGEIS 2300 (2304)
Q Consensus 2286 ~~~~~~~~~~~~~~~ 2300 (2304)
+||+++|+++++.|+
T Consensus 744 ~~~~~~~~~~~~~l~ 758 (758)
T 3k8x_A 744 MLSTDDKEKLLKTLK 758 (758)
T ss_dssp ---------------
T ss_pred hCCHHHHHHHHHhhC
Confidence 999999999999874
No 2
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=100.00 E-value=1.9e-152 Score=1474.89 Aligned_cols=756 Identities=47% Similarity=0.821 Sum_probs=623.4
Q ss_pred cccccCCccccccccCchhhhhhhhhcccCCccccccCCCCCCCccccCCCcccchhhhhcccCccCCCCcchhHHHHHH
Q 000086 1493 VRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFE 1572 (2304)
Q Consensus 1493 ~~g~~~~~~~~~pY~~~~~~~~kr~~a~~~~t~y~yd~p~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1572 (2304)
..|+|||+|+++|||++++||+||++|+..||+|+||||+ ||+
T Consensus 18 ~~g~~~~~~~~~p~~~~~~l~~kr~~a~~~g~~y~yd~~~-------------------------------------~~~ 60 (793)
T 2x24_A 18 GSGPQHGMLINTPYVTKDLLQAKRFQAQSLGTTYVYDFPE-------------------------------------MFR 60 (793)
T ss_dssp -------------------CTTHHHHHHHTTSCCGGGHHH-------------------------------------HHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHH-------------------------------------HHH
Confidence 3899999999999999999999999999999999999999 999
Q ss_pred HHHHHhHhhhCCCCCCCCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEecc
Q 000086 1573 TALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVT 1652 (2304)
Q Consensus 1573 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t 1652 (2304)
++...+|.+. ...|...+++.|++||+ +| +|.|+.+.+|.|++|||+|.++++||+||+||+|+|++||+|
T Consensus 61 ~a~~~~w~~~----~~~~~~~l~~~elllD~-~g----sf~E~~~~~~~~~~GmV~g~~~~~t~~~~~Gr~vvVianD~t 131 (793)
T 2x24_A 61 QALFKMWPSP----DKYPKDILTYTELVLDP-QG----QLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDIT 131 (793)
T ss_dssp HHHHHHSCSS----SCCCTTSEEEEEEEECT-TS----CEECCCCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECSS
T ss_pred HHHHHhhhhc----ccCCCCchhHHHHhcCC-CC----CEEEeCCccCCCCCCeeeeeecccCccccCCeEEEEEEECCc
Confidence 9999999752 23557789999999988 67 799999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhc--c
Q 000086 1653 FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG--S 1730 (2304)
Q Consensus 1653 ~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~--~ 1730 (2304)
|++||||+.+++||.|++++|++.|+|+|||++||||||+++|++++||||+|+|+.+|..||+|+|+|++++++++ +
T Consensus 132 ~~gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGARig~~ee~~sl~qma~~d~~~p~~G~~~~yl~~~~~~~~sa~~ 211 (793)
T 2x24_A 132 FRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVAWVDPEDPHKGIKYLYLTPQDYTRISSLN 211 (793)
T ss_dssp GGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCHHHHTTCEEEESSSSCSTTCEEEEEECHHHHHHTTTSC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCccchhhhhhhhcccccCccCcccchheeccchhHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred ceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCc
Q 000086 1731 SVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQ 1810 (2304)
Q Consensus 1731 ~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~ 1810 (2304)
+++.++++ ++||++|+|++|+|+++|+|++|+++||+|||+||+||.+|||||+|||||+|||||+++|||++||++++
T Consensus 212 ~v~~~~~~-~~ge~~~~i~~i~g~~~~i~v~~l~~SG~iag~~s~a~~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a 290 (793)
T 2x24_A 212 SVHCKHVE-EDGESRYVITDIIGKEEGLGVENLRGSGMIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVENS 290 (793)
T ss_dssp SEEEEEEE-ETTEEEEEEEEECCSSSSSSTHHHHHHHHHHHHHHHHHHHSCEEEEECSEEETHHHHHHHHTCCEEEETTC
T ss_pred cccccccc-cccccceeeeccccccchHHHHHHHhccchhhccccccCCCCEEEEEecCCchHHHHHHhhCCeEEEeccc
Confidence 78888877 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEecChHHHHHhhcccccccccccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCc
Q 000086 1811 PIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVE 1890 (2304)
Q Consensus 1811 ~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~ 1890 (2304)
+|+||||++|++++|+++|+|+++|||+++|++||++|++++||.++++.+++||||+|.++.+++|..+|.||++|.++
T Consensus 291 ~i~ltGp~vi~~~~Ge~vy~s~e~LGGa~v~~~~Gv~d~vv~dd~ea~~~ir~~LsylP~~~~~~~p~~~~~d~~~rl~~ 370 (793)
T 2x24_A 291 HIILTGATALNKVLGRDVYTSNNQLGGVQIMHHNGVSHVTVPDDFEGVCTILEWLSYMPKDNRSPVPVVTPKDPIDREIE 370 (793)
T ss_dssp EEESSCHHHHHHHHSSCCCSCHHHHHSHHHHTTTTSCSEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCSSCSSCCCC
T ss_pred cEEecCHHHHHHhcCCcccCChhhhccHHHHHhcCceEEEeCCHHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred cccC-CCCChHHHhhcccCCC--CCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCC
Q 000086 1891 YLPE-NSCDPRAAICGFLDNN--GKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQL 1967 (2304)
Q Consensus 1891 ~~P~-~~yD~r~~i~~~~d~~--~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p 1967 (2304)
++|. .+||+|++|++..++. |.|+++|||+++|+|++++||+++|||+|||+|+|||||||++++++..+||||+++
T Consensus 371 ivP~~~pyD~r~vI~g~~~~~~~~~~~~~l~D~g~F~E~~~~~g~~iVtG~ARl~G~pVGVIAn~~~~v~~~~padP~~~ 450 (793)
T 2x24_A 371 FQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVPWAQTVVTGRARLGGIPVGVIAAETRTVELVVPADPANL 450 (793)
T ss_dssp CCCCSSCCCHHHHHHCEECSSSSSCEECCSSCTTCCEEESCSSCTTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTST
T ss_pred hCCCCCCCCHHHHHhcccccccccchhhccccCcceEEecCcccCcEEEEEEEECCEEEEEEEEccccccccccCCcccc
Confidence 9999 9999999999776644 689999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1968 DSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1968 ~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
++.|+...++||+|+|++++|+||||++|++|++|||+|+||+||++|.++|+.|++++||++++++++++||+|++|+|
T Consensus 451 ~~~e~~~~~~gG~l~~~~a~KaarfI~~cd~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~r 530 (793)
T 2x24_A 451 DSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPP 530 (793)
T ss_dssp TCCCEEEEECTTEECHHHHHHHHHHHHHHHTTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECT
T ss_pred chhhhhhhhcCCcccHHHHHHHHHHHHHhccCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHH
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVE 2127 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~ 2127 (2304)
.|+++||||+++++++++|+||+||||+|+++||+|||+|+|+||++++.++|+|+|++|++|++++... +.++++++
T Consensus 531 ~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~VM~pEgaa~Il~r~~~l~~~m~~~~~~~~~l~~~~~~~--~~~~~~~~ 608 (793)
T 2x24_A 531 YAEVRGGSWAVMDTSINPLCIEMYADRESRASVLEPEGTVEIKYQKKDLVKTIRRLDPISKKLVEQLGVS--ELSDTDRK 608 (793)
T ss_dssp TCEEEHHHHHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCSSCC-------------------
T ss_pred CCcccchhHHhhhcccCccHHHHhhhccCEEEecCHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHhcCC--CCCHHHHH
Confidence 8999999999999999999999999999999999999999999999988899999999999999887654 33455677
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCH
Q 000086 2128 SLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTH 2207 (2304)
Q Consensus 2128 ~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l~e~~~~~~~~~~~~~~~~~ 2207 (2304)
++++++++|+++++|+|+|+|.+|+|+||+|+||+++|+||+||+|++||++|+|+|+|+|+|+.+++++.++++ .+++
T Consensus 609 ~~~~~i~~re~~~~p~y~~~a~~y~~~~~~p~r~a~~G~Id~VIdp~~TR~~l~~~L~~~l~e~~~~~~~~~~~~-~~~~ 687 (793)
T 2x24_A 609 ELEGQLKAREDLLLPMYHQVALHFADLHDTAGRMLEKGVIYDILEWKTARSFLYWRLRRLLLESQVKQEVLRACP-ELSH 687 (793)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTTSSSEEECHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHhcCCHHHHHHcCcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ccch
Confidence 888888889999999999999999999999999999999999999999999999999999999999999999977 5899
Q ss_pred HHHHHHHHHhhhccccccccCCCccCchhHHHhhc-Cc-------hHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHH
Q 000086 2208 KSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD-DS-------RNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQG 2279 (2304)
Q Consensus 2208 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2279 (2304)
.+++++|++||.++. ++.....|+||+.|++|++ +. +.++++|++||.+++.++|.++++++ ++.++ +|
T Consensus 688 ~~~~~~~~~w~~~~~-~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 764 (793)
T 2x24_A 688 MHVQSMLRRWFVETE-GAVKAYLWDNNQTVVQWLEAHGQASDVLHSTIRENITCLRRDSALKTIQGLVQEN-PELAM-DS 764 (793)
T ss_dssp --CHHHHHHHHHHHH-CTTSGGGGGCHHHHHHHHHHCC------------------------------------------
T ss_pred HHHHHHHHHHHhhcc-cccccccccccHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cHhHH-HH
Confidence 999999999998754 3344568999999999999 43 34899999999999999999999998 77778 59
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 000086 2280 LATLLSKVDPSCREQLIGEISK 2301 (2304)
Q Consensus 2280 ~~~~~~~~~~~~~~~~~~~~~~ 2301 (2304)
+..++++|++++|+++++.|++
T Consensus 765 ~~~~~~~~~~~~~~~~~~~l~~ 786 (793)
T 2x24_A 765 LVYVSQHISPAERAQVIHLLST 786 (793)
T ss_dssp ----------------------
T ss_pred HHHHHhhCCHHHHHHHHHHHhc
Confidence 9999999999999999999964
No 3
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=100.00 E-value=5.8e-98 Score=986.93 Aligned_cols=632 Identities=29% Similarity=0.469 Sum_probs=499.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|++++++||++|++++ ++++|.+++++++++||+++.+++.+..++|+|.+.|+++
T Consensus 1 m~~kiLIanrGeia~riiraar~lGi~~v-----------av~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~ 69 (681)
T 3n6r_A 1 MFNKILIANRGEIACRVIKTARKMGISTV-----------AIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAA 69 (681)
T ss_dssp -CCCBCBSCCHHHHHHHHHHHGGGSCCBC-----------CEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 78999999999999999999999999996 5566888999999999999999888888899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+.
T Consensus 70 a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~-------------- 135 (681)
T 3n6r_A 70 IRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYM-------------- 135 (681)
T ss_dssp HHHTCCSCCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC----------------
T ss_pred HHHhCcCEEEECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+..+.. +.+++||+|+++++|
T Consensus 136 -------~~~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~re 208 (681)
T 3n6r_A 136 -------GLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208 (681)
T ss_dssp --------------------------------------------------------------------------CCSCEE
T ss_pred -------cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcE
Confidence 126788899999999999999999999999999999999999999998876543 458999999999899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++|++++|++|++++++.|+|++||+|||+++++|++.++++..++|.+.+.++++++||+|++++||++++ +|+||||
T Consensus 209 i~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg~~~~l 287 (681)
T 3n6r_A 209 IEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKNFYFL 287 (681)
T ss_dssp EEEEEECCSSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TSCCCCC
T ss_pred EEEEEEEeCCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999989999999999999999999999999999999994 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++||++|+++|+|++++++++++|.|++. .+....+.||+|
T Consensus 288 EiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~~--------------------------------~~~~~~~~g~ai 335 (681)
T 3n6r_A 288 EMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLSI--------------------------------TQGDVKLTGWAI 335 (681)
T ss_dssp EEECSCCTTHHHHHHHHTCCHHHHHHHHHTSCCCSS--------------------------------CTTTCCCCSEEE
T ss_pred ecccccCCCcHHhHHHhCCCHHHHHHHHHCCCCCCC--------------------------------CccccceeEEEE
Confidence 999999999999999999999999999999999863 234556789999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccC-C-------------------CcEEEEEeeeeCCcccccCCCccEEEEEEeCC
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKS-K-------------------PNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s-~-------------------~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2304)
++|+|+|||.++|.|++|+|..+.+|. + ++|+++.++.+|+.|+++|||++||||+||+|
T Consensus 336 ~~ri~aedp~~~f~p~~G~i~~~~~p~~~~~~~~~~~~~w~~d~~~~~~~vr~d~~~~~g~~v~~~yd~~iak~i~~g~~ 415 (681)
T 3n6r_A 336 ENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPT 415 (681)
T ss_dssp EEEEESEEGGGTTEECCEECSCEECCCC--------------------CCEEEEESCCTTCEECTTSCCEEEEEEEEESS
T ss_pred EEEEecCCcccccCCCCcEEEEEECCCCCcccccccccccccccccCCCcEEEEccccCCCccCCCCCCceeEEEEEcCC
Confidence 999999999999999999999998887 3 37999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhhhhhhccCCCCchh----HHHhhHHHHHHH
Q 000086 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYL----SVVGGALYKASA 578 (2304)
Q Consensus 503 reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~----~~~~~a~~~~~~ 578 (2304)
|++|+++|.+||+++.|+| ++||++||++||+||+|++|+++|+|||+++++.+....++... +++++++..+.
T Consensus 416 r~~a~~~~~~al~~~~i~g-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 493 (681)
T 3n6r_A 416 RAAAIEAMRIALDSFEVEG-IGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLPETDLRRVAAAAAAMHRVA- 493 (681)
T ss_dssp HHHHHHHHHHHHHHCEECS-SCCSHHHHHHHHHCHHHHHCCCCSSHHHHHCTTSCCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCEEEC-ccCCHHHHHHHhCCHhhccCCcccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999 99999999999999999999999999999998887766555322 22222222221
Q ss_pred hhhhhhcccccccccCCCCCCcccccceeeeEeecCeEEEEEEEeeCCCeEEEee-CCeEEEEEEEEecCCc--eEEEeC
Q 000086 579 SSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRM-NESEIEAEIHTLRDGG--LLMQLD 655 (2304)
Q Consensus 579 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vel~~~g~~y~v~v~~~~~~~y~l~i-ng~~~~V~v~~l~dg~--l~v~~~ 655 (2304)
......+ .|+.+... ........+.++|.+|.++++. +++.|.+.+ ||..+.+.. .+.++. +.+.+|
T Consensus 494 --~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 563 (681)
T 3n6r_A 494 --EIRRTRV-----SGRMDNHE-RRVGTEWVVTLQGADFPVTIAA-DHDGSTVSFDDGSSMRVTS-DWTPGDQLANLMVD 563 (681)
T ss_dssp --HHHHTTC-----TTCCTTCC-CCCCSEEEEECSSCEEEEEEEE-CSSCEEEEETTSCEEEEEE-CCCTTCSEEEEEET
T ss_pred --hhccccc-----ccCCCccc-cCCCcCEEEEECCEEEEEEEEE-cCCeEEEEEeCCcEEEEEE-EecCCCeEEEEEEC
Confidence 1111112 22322211 1111223344489999999987 667799999 898887763 234454 668899
Q ss_pred CeeEEEEeeecccceEEEEeCceeccc-----------------cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 656 GNSHVVYAEEEAAGTRLLIDGRTCLLQ-----------------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 656 G~s~~v~~~ee~~~~~v~v~g~t~~~~-----------------~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
|.++.+++......+++..+|.++.+. ...+++.|+|||||+|++|+|++||+|++||+|++|
T Consensus 564 G~~~~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~i 643 (681)
T 3n6r_A 564 GAPLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTI 643 (681)
T ss_dssp TEEEEEEEEEETTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CEEEEEEEEEeCCEEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCCcEEEEEEEeCCCCEEcCCCEEEEE
Confidence 999999998888889998888877552 134578999999999999999999999999999999
Q ss_pred EccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 719 EVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 719 EaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
|+|||+++|+||.+|+|+++ +++|++|+.|++|++|+
T Consensus 644 EamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 644 EAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp ECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred EecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 99999999999999999999 99999999999999985
No 4
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=100.00 E-value=7.3e-97 Score=975.61 Aligned_cols=626 Identities=28% Similarity=0.442 Sum_probs=472.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.||+||||+|+|++|++++++||++||+++ ++++|.+.++.++++||+++.+|+.+...+|+|.+.|++
T Consensus 26 ~m~~kILI~g~Geia~~iiraar~lGi~~v-----------av~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~ 94 (675)
T 3u9t_A 26 RSIQRLLVANRGEIACRVMRSARALGIGSV-----------AVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIA 94 (675)
T ss_dssp CCCSEEEECCCHHHHHHHHHHHHHHTCEEE-----------EEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHH
Confidence 479999999999999999999999999985 556688899999999999999998888889999999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+||++.
T Consensus 95 ~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~------------- 161 (675)
T 3u9t_A 95 AALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYH------------- 161 (675)
T ss_dssp HHHHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCC-------------
T ss_pred HHHHhCcCEEEeCCcccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccc
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSR 281 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~r 281 (2304)
..+.+.+++.++++++||||||||+.|+||+||++|++++||.++++.+..+.. +.++|||+|+++++
T Consensus 162 --------~~~~s~~e~~~~a~~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~r 233 (675)
T 3u9t_A 162 --------GEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPR 233 (675)
T ss_dssp --------SCCCCTTHHHHHHHHSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCB
T ss_pred --------cCCCCHHHHHHHHHhCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCc
Confidence 125788899999999999999999999999999999999999999988765543 46899999999999
Q ss_pred eeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEE
Q 000086 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2304)
Q Consensus 282 eieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yf 361 (2304)
|++|++++|++|++++++.|||++||+|||+++++|++.++++..++|.+.+.++++++||+|+++|||++++ +|+|||
T Consensus 234 eiev~v~~d~~G~vv~l~~rd~s~qr~~qk~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG~~~~ 312 (675)
T 3u9t_A 234 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RGQFFF 312 (675)
T ss_dssp CEEEEEEECSSSCEEEEEEEECCCBSSSSBCEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TSCBCB
T ss_pred EEEEEEEEcCCCCEEEEeccccceeeccceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CCCEEE
Confidence 9999999999999999999999999999999999999989999999999999999999999999999999984 678999
Q ss_pred EEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000086 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2304)
Q Consensus 362 LEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gha 441 (2304)
||||||+|++|+++|+++|+|++++++++++|.|++. .+..+.++||+
T Consensus 313 iEiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~~--------------------------------~~~~~~~~g~a 360 (675)
T 3u9t_A 313 MEMNTRLQVEHPVTEAITGLDLVAWQIRVARGEALPL--------------------------------TQEQVPLNGHA 360 (675)
T ss_dssp CEEESSCCTTHHHHHHTTTCCHHHHHHHHHTTCCCSC--------------------------------CTTTCCCCSEE
T ss_pred EeccccccCCchhhhhhcCCCHHHHHHHHHCCCCCCC--------------------------------CccccccCcce
Confidence 9999999999999999999999999999999999863 23445678999
Q ss_pred EEEEEccCCCCCCCCCCCCcccccccc-CCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 442 VAVRVTSEDPDDGFKPTSGKVQELSFK-SKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 442 i~~RI~aEdp~~~f~P~~G~i~~l~~~-s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
+++||++|||.++|.|++|+|..+.+| ..++||++.++.+|+.|+++|||++|+||++|+||++|+++|.+||+++.|+
T Consensus 361 i~~ri~aedp~~~f~P~~G~l~~~~~p~~~~gvr~d~~~~~G~~v~~~~ds~la~vi~~g~~r~~a~~~~~~al~~~~i~ 440 (675)
T 3u9t_A 361 IEVRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVG 440 (675)
T ss_dssp EEEEEESCCTTTTSCCCCCBCSEEECCCCCTTEEEEESCCTTCBCCTTSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEEeccCcccccCCCCEEEEEECCCCCCCEEEEecccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEEEE
Confidence 999999999999999999999999998 7899999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcCccccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHHhhhhh------hcccccccccC
Q 000086 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAM------VSDYIGYLEKG 594 (2304)
Q Consensus 521 G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~g 594 (2304)
| ++||++||++||++|+|++|+++|+|||+++++.+....++... ++++|+.......... .+.|.. ..|
T Consensus 441 g-~~tn~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 516 (675)
T 3u9t_A 441 G-LRTNLAFLRRILGHPAFAAAELDTGFIARHQDDLLPAPQALPEH-FWQAAAEAWLQSEPGHRRDDDPHSPWSR--NDG 516 (675)
T ss_dssp S-SCCTHHHHHHHHTCHHHHTTCCCTTHHHHTHHHHSCCCCCCCHH-HHHHHHHHHHHHCCCCCBTTBTTCGGGC--CSC
T ss_pred C-ccCCHHHHHHHhCCHHHhCCCcccchhhhcchhhcCCCCCChHH-HHHHHHHHHHHHhhhhhccccccCcccc--ccc
Confidence 9 99999999999999999999999999999998887654443332 2222222111111000 011211 122
Q ss_pred CCCCCcccccceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEE
Q 000086 595 QIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLI 674 (2304)
Q Consensus 595 ~~~~~~~~~~~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v 674 (2304)
+-. .....+.++|.++|.+|.+.+++.++ |. + .+.++.+.+.+||.++.+++......+++..
T Consensus 517 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~ 579 (675)
T 3u9t_A 517 WRS---ALARESDLMLRCRDERRCVRLRHASP--SQ---------Y---RLDGDDLVSRVDGVTRRSAALRRGRQLFLEW 579 (675)
T ss_dssp CCS---SSCEEEECCEEETTEEECCEEEESSS--CS---------E---EEETTEEEEEETTEEEEEEEEEETTEEEEEC
T ss_pred ccc---cCCccEEEEEEECCEEEEEEEEEcCC--eE---------E---EecCCeEEEEECCEEEEEEEEEeCCEEEEEE
Confidence 211 12245678899999999999987654 21 1 2456678888889888888877777888888
Q ss_pred eCceeccc----------cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC
Q 000086 675 DGRTCLLQ----------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ 743 (2304)
Q Consensus 675 ~g~t~~~~----------~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~ 743 (2304)
+|.++.+. ...+++.|+|||||+|++|+|++||+|++||+|++||+|||+++|+||.+|+|+++ +++|+
T Consensus 580 ~g~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~ 659 (675)
T 3u9t_A 580 EGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGE 659 (675)
T ss_dssp SSSEEEEEECCHHHHHC---------------------------------------------------------------
T ss_pred CCeEEEEEEcCcccccccccCCCCeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcC
Confidence 88777664 23456789999999999999999999999999999999999999999999999988 99999
Q ss_pred ccCCCCEEEEEecC
Q 000086 744 AMQAGELIARLDLD 757 (2304)
Q Consensus 744 ~v~~G~~La~l~~~ 757 (2304)
+|+.|++|++|+.+
T Consensus 660 ~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 660 LVEEGTPLVELDEN 673 (675)
T ss_dssp --------------
T ss_pred CcCCCCEEEEEecC
Confidence 99999999999865
No 5
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=2.7e-95 Score=941.62 Aligned_cols=553 Identities=54% Similarity=0.943 Sum_probs=469.1
Q ss_pred cccccCCC-CCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEE
Q 000086 7 RSAMAGLG-RGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVA 85 (2304)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~ 85 (2304)
|++|||++ .-+++...+++...+..++++++||++.||++||+||||||||++|+++||+||+|||++|++++||++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVa 93 (587)
T 3jrx_A 14 RPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVV 93 (587)
T ss_dssp -------------------CCTTCCCCSSHHHHHHHTTCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEE
T ss_pred CCCCCcchhhcCchhhhhhhhccceeecCHHHHHHhcCCCcccCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEE
Confidence 67899997 22223333455678888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHH
Q 000086 86 MATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPAT 165 (2304)
Q Consensus 86 vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~e 165 (2304)
|++++|.+++++++++||+++.+|+.++.++|+|++.|+++|++.++|+|||||||++|++.+++.|++.|++|+||+++
T Consensus 94 v~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ 173 (587)
T 3jrx_A 94 MVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSE 173 (587)
T ss_dssp EECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHH
T ss_pred EecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHH
Confidence 99988888999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCC------CCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 166 SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP------ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 166 am~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~------~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
+++.++||..++++++++|||+|||..++++++. ....+.+|++.|.++++.+.+++.++++++||||||||+.
T Consensus 174 ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~ 253 (587)
T 3jrx_A 174 AMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASE 253 (587)
T ss_dssp HHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETT
T ss_pred HHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCC
Confidence 9999999999999999999999999864432211 1235678999999999999999999999999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCC
Q 000086 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2304)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~ 319 (2304)
|+||+||++|++.+||.++++++..+..++++|||+|+++++|++|++++|++|+++++++|||++||+|||+++++|++
T Consensus 254 GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~ 333 (587)
T 3jrx_A 254 GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPAT 333 (587)
T ss_dssp CCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCC
T ss_pred CCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCC
Confidence 99999999999999999999999988888899999999998999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 320 ~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
.+++++.++|.+.|.++++++||+|+++|||++++ +|++||||||||+|++|++||+++|+|++++|+++++|.||+.+
T Consensus 334 ~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~ 412 (587)
T 3jrx_A 334 IAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRL 412 (587)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECS-SSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccc
Confidence 88999999999999999999999999999999984 68899999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEee
Q 000086 400 PEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479 (2304)
Q Consensus 400 pdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v 479 (2304)
+|||.+||..|.+ ++.|+|.. ....+.++||+|+||||||||.++|.|++|+|+.+++|++++||+++++
T Consensus 413 ~di~~~~~~~~~~---------~~~~~~~~-~~~~~~~~ghaie~Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~ 482 (587)
T 3jrx_A 413 KDIRLLYGESPWG---------VTPISFET-PSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSV 482 (587)
T ss_dssp HHHHHHTTCCTTC---------CCCCCSSS-CSSCCCCCSEEEEEEEEC----------CCCCEEEECSSCTTEEEEECC
T ss_pred hhccccccccccc---------cccccccc-ccccCCCCceEEEEeecccCccccCCCCCcEEEEEEeCCCCceEEeccc
Confidence 9999999999987 78888842 1123678999999999999999999999999999999999999999988
Q ss_pred eeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhhhhhhcc
Q 000086 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRA 559 (2304)
Q Consensus 480 ~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~ 559 (2304)
..++.|++||||++||||+||+||++|+++|.+||+++.|+|.|+||++||++||++|+|++|+++|+|||+++++++.+
T Consensus 483 ~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~g~~~t~~~~~~~~~~~~~ 562 (587)
T 3jrx_A 483 AATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLIAEKVQA 562 (587)
T ss_dssp C----------CCEEEEEEEESSHHHHHHHHHHHHHHHHHSSTTSSTTHHHHHHHTSHHHHTTCSCCGGGGC--------
T ss_pred cccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccEEeCCCCCcHHHHHHHhCChhhccCCcchhHHhHhhhhhccc
Confidence 88888999999999999999999999999999999999999977999999999999999999999999999999999988
Q ss_pred CCCCchhHHHh
Q 000086 560 ERPPWYLSVVG 570 (2304)
Q Consensus 560 ~~~~~~~~~~~ 570 (2304)
++|+++++++-
T Consensus 563 ~~~~~~~~~~~ 573 (587)
T 3jrx_A 563 EKPDIMLGVLE 573 (587)
T ss_dssp -----------
T ss_pred CCCcchhhhhh
Confidence 99998887653
No 6
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=100.00 E-value=7.3e-89 Score=879.39 Aligned_cols=514 Identities=56% Similarity=0.978 Sum_probs=435.4
Q ss_pred ccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEc
Q 000086 29 PAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEV 108 (2304)
Q Consensus 29 ~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~v 108 (2304)
+..++++++||+..||++||+||||||||++|+++||+||+|||++|++++||++|+|++++|.+++++++++||+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i 100 (540)
T 3glk_A 21 DFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 100 (540)
T ss_dssp CCCCSSHHHHHHHTTCSCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEEC
T ss_pred CccccCHHHHHHhcCCcccccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcC
Q 000086 109 PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2304)
Q Consensus 109 p~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtp 188 (2304)
|+.++.++|+|++.|+++|++.++|+|||||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+|
T Consensus 101 ~~~~~~~sy~d~~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp 180 (540)
T 3glk_A 101 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTL 180 (540)
T ss_dssp CCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBC
T ss_pred CCCCcccccccHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCC
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCC------CCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH
Q 000086 189 PWSGSHVKIPP------ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262 (2304)
Q Consensus 189 p~s~~~~~~~~------~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~ 262 (2304)
||..++++++. ....+.+|++.|..+++.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~ 260 (540)
T 3glk_A 181 PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQV 260 (540)
T ss_dssp CBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHH
T ss_pred CcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHH
Confidence 99763332211 112456888888888999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCc
Q 000086 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342 (2304)
Q Consensus 263 ~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy 342 (2304)
..+..+++++||+|+++++|++|++++|++|+++++++|+|++||+|||+++++|++.++++..++|.+.|.++++++||
T Consensus 261 ~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~ 340 (540)
T 3glk_A 261 QSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGY 340 (540)
T ss_dssp HHHSTTCCEEEEECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 98887889999999999899999999999999999999999999999999999999988999999999999999999999
Q ss_pred eeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
+|+++|||++++ +|++||||||||+|++|+++|+++|+|++++|+++++|.||+.+++||.+||..|.+ +
T Consensus 341 ~G~~~VEf~~d~-dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~---------~ 410 (540)
T 3glk_A 341 VSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWG---------V 410 (540)
T ss_dssp CEEEEEEEEEET-TSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSC---------C
T ss_pred ccceEEEEEEcC-CCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCccccccccccccccccc---------c
Confidence 999999999984 688999999999999999999999999999999999999999999999999998876 6
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCC
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2304)
..|.|.. ....+.++||+|+||||||||.++|.|++|+|+.+.+|++++||+++++..++.|++||||++||||+||+|
T Consensus 411 ~~~~~~~-~~~~~~~~g~aie~ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~ 489 (540)
T 3glk_A 411 TPISFET-PSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGEN 489 (540)
T ss_dssp SCCCSCC-C----CCCSEEEEEEEC------------CCEEECCCSSCCSEEEEEEC------------CEEEEEEEESS
T ss_pred ccccccc-ccccCCCceeEEEEEEeccCCcccccCCceEEEEEEcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCC
Confidence 7777742 111367899999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 503 reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
|++|+++|.+||+++.|+|.|+||++||++||++|+|++|+++|+|||++|
T Consensus 490 r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 540 (540)
T 3glk_A 490 REEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLI 540 (540)
T ss_dssp HHHHHHHHHHHHHHHTCC----HHHHHHHHHHHSHHHHHTCC---------
T ss_pred HHHHHHHHHHHHhccEEecccCCcHHHHHHHhCChhhcCCCccchhhhhcC
Confidence 999999999999999999966999999999999999999999999999875
No 7
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=100.00 E-value=2e-79 Score=779.51 Aligned_cols=417 Identities=22% Similarity=0.353 Sum_probs=375.2
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++|||||++||||+++++|+.|++|+|.++|+|+|+|++||||||| |++.+|+|
T Consensus 82 ~dgvvtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGGARmq--eg~~sl~~ 153 (523)
T 1on3_A 82 ADGVVTGRGTI------LGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQ--EGIDSLSG 153 (523)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChh--hHHHHHHH
Confidence 57899999886 99999999999999999999999999999999999999999999999999999 88999987
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+|. .+.+.||. ||+
T Consensus 154 ~~------------~i~~----------------------------------------~~~~~s~~-----------iP~ 170 (523)
T 1on3_A 154 YG------------KMFF----------------------------------------ANVKLSGV-----------VPQ 170 (523)
T ss_dssp HH------------HHHH----------------------------------------HHHHHTTT-----------SCE
T ss_pred HH------------HHHH----------------------------------------HHHHhcCC-----------CCE
Confidence 76 1111 11122333 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1861 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i 1861 (2304)
|+++||||+||+||.++|||++||++++.|+||||++|++++|+++ ++++|||+++|. .||++|++++||.++++.+
T Consensus 171 Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~aGP~vI~~~~ge~~--~~e~lggae~h~~~~G~vd~vv~d~~~~~~~~ 248 (523)
T 1on3_A 171 IAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIA 248 (523)
T ss_dssp EEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCC--CHHHHHSHHHHHHTTCCCSEEESSHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHhhCCeEEEeCCCEEEecCHHHHHHHhCCcC--ChHhcccHHHHhhccCceEEEeCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 778999999998 7999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCC---CCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEE
Q 000086 1862 LKWLSYVPPHIGGALPIISPLDPPDR---PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVV 1935 (2304)
Q Consensus 1862 ~~~LsylP~~~~~~~p~~~~~d~~~r---~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vV 1935 (2304)
++||+|+|.++.+.+|..++.|++++ ...++|. ++||+|++|++ |||+++|+|++++||+++|
T Consensus 249 r~lL~~lp~~~~~~~p~~~~~d~p~~~~~l~~~vp~~~~~~~d~r~~I~~-----------l~D~g~f~E~~~~~~~~iv 317 (523)
T 1on3_A 249 KKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAK-----------IVDWGDYLEVKAGYATNLV 317 (523)
T ss_dssp HHHHHTSCSSTTSCCCCCSCCCCCCCCGGGGGTSCSSTTCCCCTHHHHHH-----------HSGGGCEEEESTTSSTTEE
T ss_pred HHHHHhcCccCcccCCCCCCCCCccchhhhhhhcCCCCCCCCCHHHHHHH-----------hCCCCeEEEecCCCcCcEE
Confidence 99999999998888887777777776 5567887 89999999997 8999999999999999999
Q ss_pred EEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCc
Q 000086 1936 TGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGG 2015 (2304)
Q Consensus 1936 tG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G 2015 (2304)
||+|||+|+|||||||+++. .||+|++++++|++|||++|+++++|||+|+||+||++|
T Consensus 318 ~G~ari~G~~Vgvian~~~~---------------------~~G~~~~~~a~Kaar~i~~~~~~~iPlv~lvDtpGf~~G 376 (523)
T 1on3_A 318 TAFARVNGRSVGIVANQPSV---------------------MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPG 376 (523)
T ss_dssp EEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCC
T ss_pred EEEEEECCEEEEEEEecCCc---------------------cCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcCcc
Confidence 99999999999999996542 489999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcchh
Q 000086 2016 QRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2016 ~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
.++|..|++++||++++++++++||+|++|+ |+++||+|++++++ +++|+ +||||+|+++||+|||+++|+||++
T Consensus 377 ~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~--g~~~Ggg~~am~~~~~~~d~--~~a~p~a~~~Vm~pegaa~Il~r~~ 452 (523)
T 1on3_A 377 VQQEYGGIIRHGAKMLYAYSEATVPKITVVL--RKAYGGSYLAMCNRDLGADA--VYAWPSAEIAVMGAEGAANVIFRKE 452 (523)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHTTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHH
T ss_pred hHHHHhhHHHHHHHHHHHHhcCCCCEEEEEe--CCcccHHHHHhcccCCCCCE--EEEcCCCeEEecCHHHHHHHHhhhh
Confidence 9999999999999999999999999999999 77899999999885 99998 9999999999999999999999975
Q ss_pred hHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc
Q 000086 2095 ELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD 2174 (2304)
Q Consensus 2095 ~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~ 2174 (2304)
++ .. .++ +++. ++++.+|++.|++|.++++.|+||+||+|+
T Consensus 453 --~~-----------------~~---~d~---~~~~--------------~~~~~~y~~~~~~p~~~a~~g~iD~II~p~ 493 (523)
T 1on3_A 453 --IK-----------------AA---DDP---DAMR--------------AEKIEEYQNAFNTPYVAAARGQVDDVIDPA 493 (523)
T ss_dssp --HH-----------------HS---SCH---HHHH--------------HHHHHHHHHHHSSHHHHHHTTSSSEECCGG
T ss_pred --hh-----------------cc---cCH---HHHH--------------HHHHHHHHHhhCCHHHHHhcCCCCEeeCHH
Confidence 11 10 011 1111 235678999999999999999999999999
Q ss_pred chHHHHHHHHHHH
Q 000086 2175 KSRSFFCRRLRRR 2187 (2304)
Q Consensus 2175 ~tR~~~~~~L~r~ 2187 (2304)
+||++|+++|+..
T Consensus 494 ~tR~~l~~~L~~l 506 (523)
T 1on3_A 494 DTRRKIASALEMY 506 (523)
T ss_dssp GHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999753
No 8
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=100.00 E-value=3.3e-78 Score=768.93 Aligned_cols=416 Identities=25% Similarity=0.394 Sum_probs=372.6
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++||+||++||+|+.+++|+.|++|+|.+.|+|+|+|++||||||| |++.+|++
T Consensus 85 ~dgvVtG~G~i------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGAR~q--eg~~~l~g 156 (527)
T 1vrg_A 85 RDGVITGVGEI------NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQ--EGVDALAG 156 (527)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEeccccCccccHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCcc--chhHHHHH
Confidence 47899999876 99999999999999999999999999999999999999999999999999999 88888876
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+| .+|.+.||. +|+
T Consensus 157 ~~------------~~~----------------------------------------~~~~~~s~~-----------iP~ 173 (527)
T 1vrg_A 157 YG------------EIF----------------------------------------LRNTLASGV-----------VPQ 173 (527)
T ss_dssp HH------------HHH----------------------------------------HHHHHHTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHhCCC-----------CCE
Confidence 65 111 112223333 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++|||||+||+||.++|||++||+++ +.|+||||++|++++|+++ ++++|||+++|. +||++|++++||.++++.
T Consensus 174 Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~aGP~vi~~~~ge~v--~~e~lggae~~~~~~G~vd~vv~d~~~~~~~ 251 (527)
T 1vrg_A 174 ITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEEI--SQEDLGGAMVHNQKSGNAHFLADNDEKAMSL 251 (527)
T ss_dssp EEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHcCCeEEEecCceEEEecCHHHHHHHhCCCC--CccccccHHHHhhcccceEEEecCHHHHHHH
Confidence 999999999999999999999999999 8999999999999999999 778999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCe
Q 000086 1861 ILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1933 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~ 1933 (2304)
+++||+|+|.++.+.+|..++.|| ++. ..++|. +|||+|++|+. |||++||+|+++.||++
T Consensus 252 ~~~~Ls~lp~~~~~~~~~~~~~dp-~~~~~~l~~~vp~~~~~pyd~r~~I~~-----------l~D~g~f~E~~~~~~~~ 319 (527)
T 1vrg_A 252 VRTLLSYLPSNNAEEPPVEDPDTS-LETPEDILDILPDNPNKGYDVRDVIKR-----------VVDHGEFFEVQPYFAKN 319 (527)
T ss_dssp HHHHHTTSCSSTTSCCCBCSCCCC-CCCCGGGGGSSCSSTTSCCCTHHHHHH-----------HSGGGCCEEESTTSSTT
T ss_pred HHHHHHhcCccCcccCCCCCCCCC-CcChHHHhhhccCCCCCCcCHHHHHHH-----------hcCCCeEEEecCCCcCc
Confidence 999999999988888887776666 443 567888 89999999997 89999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCC
Q 000086 1934 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 2013 (2304)
Q Consensus 1934 vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~ 2013 (2304)
+|||+|||+|+||||||++++. .||+|++++++|++|||++|+++++|||+|+||+||+
T Consensus 320 vV~G~ari~G~~V~via~~~~~---------------------~~G~~~~~~~~Kaar~i~~a~~~~~Plv~lvDtpG~~ 378 (527)
T 1vrg_A 320 IVIGFARIQGKTVGIVANQPSV---------------------LAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYL 378 (527)
T ss_dssp EEEEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBC
T ss_pred EEEEEEEECCEEEEEEEEcCcc---------------------cCCCCCHHHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Confidence 9999999999999999996543 4899999999999999999999999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcc
Q 000086 2014 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFR 2092 (2304)
Q Consensus 2014 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r 2092 (2304)
+|.++|..|+++++|++++++++++||+|++|+ |+++||+|++|+++ +++|+ +||||+|+++||+|||+++|+||
T Consensus 379 ~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~--g~~~gGg~~am~~~~~~~d~--~~a~p~a~~~Vm~pegaa~Il~r 454 (527)
T 1vrg_A 379 PGVAQEHGGIIRHGAKLLYAYSEATVPKITVIL--RKAYGGAYIAMGSKHLGADM--VLAWPSAEIAVMGPEGAANIIFK 454 (527)
T ss_dssp CCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTH
T ss_pred CchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEe--CCcccHHHHHhcCCCCCCCE--EEEcCCCeEEecCHHHHHHHHhh
Confidence 999999999999999999999999999999999 78899999999984 99998 99999999999999999999999
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecC
Q 000086 2093 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172 (2304)
Q Consensus 2093 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~ 2172 (2304)
++ ++.+ .++ +++. ++++.+|+++|++|.++++.|+||+||+
T Consensus 455 ~~--~~~~--------------------~d~---~~~~--------------~~~~~~y~~~~~~p~~~~~~g~iD~II~ 495 (527)
T 1vrg_A 455 RE--IEAS--------------------SNP---EETR--------------RKLIEEYKQQFANPYIAASRGYVDMVID 495 (527)
T ss_dssp HH--HHHS--------------------SCH---HHHH--------------HHHHHHHHHHTSSHHHHHHTTSSSEECC
T ss_pred hh--hhcc--------------------cCH---HHHH--------------HHHHHHHHHhhCCHHHHHHcCCCCeeeC
Confidence 76 1111 011 1111 1356789999999999999999999999
Q ss_pred ccchHHHHHHHHHHH
Q 000086 2173 WDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2173 ~~~tR~~~~~~L~r~ 2187 (2304)
|++||++|+++|+..
T Consensus 496 p~~tR~~l~~~L~~l 510 (527)
T 1vrg_A 496 PRETRKYIMRALEVC 510 (527)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999753
No 9
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=100.00 E-value=1.7e-78 Score=767.59 Aligned_cols=417 Identities=23% Similarity=0.347 Sum_probs=369.1
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+|++
T Consensus 84 ~dgvVtG~G~I------~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGaRmq--Eg~~~l~~ 155 (530)
T 3iav_A 84 GDGVVTGYGTV------DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ--EGVASLGA 155 (530)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchh--hhhhhHHH
Confidence 56899999886 99999999999999999999999999999999999999999999999999998 99999876
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+|. .+.+.||. ||+
T Consensus 156 ~~------------~i~~----------------------------------------~~~~~s~~-----------iP~ 172 (530)
T 3iav_A 156 YG------------EIFR----------------------------------------RNTHASGV-----------IPQ 172 (530)
T ss_dssp HH------------HHHH----------------------------------------HHHHTTTT-----------SCE
T ss_pred HH------------HHHH----------------------------------------HHHHHcCC-----------CCE
Confidence 65 1211 11223333 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++|+|||+||+||.++|+|++||+++ +.|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++.
T Consensus 173 Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~aGP~vi~~~~ge~v--~~e~LGGa~~h~~~sGv~d~va~de~~a~~~ 250 (530)
T 3iav_A 173 ISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEY 250 (530)
T ss_dssp EEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEecCcchHHHHHHHhCCEEEEecCCcEEEecCHHHHHHHhCCcC--ChhhcchHHHHHhccCceeEEecChHHHHHH
Confidence 999999999999999999999999987 8999999999999999999 899999999995 899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCC--CCC----CCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCC
Q 000086 1861 ILKWLSYVPPHIGGALPIISPLDP--PDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA 1931 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~d~--~~r----~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a 1931 (2304)
+++||||||.++.+.+|..++.|| +++ ...++|. ++||+|++|++ |||.++|+|++++||
T Consensus 251 ~r~~ls~lp~~~~~~~p~~~~~dp~~~~~~~~~l~~ivp~~~~~~yd~r~~I~~-----------l~D~~~f~E~~~~~~ 319 (530)
T 3iav_A 251 VKQLLSYLPSNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEH-----------VLDDAEFFETQPLFA 319 (530)
T ss_dssp HHHHHHHSCSSTTSCCCCCCCCCCCSCCHHHHHGGGSSCSSTTCCCCHHHHHHT-----------TSGGGCCEEESTTSC
T ss_pred HHHHHHhccccCCCCCCCCCCCCcccccCChHhHHHhccCCCCCCCCHHHHHHH-----------HcCCcceeeeccccC
Confidence 999999999998888887777676 443 3567887 99999999997 799999999999999
Q ss_pred CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCC
Q 000086 1932 RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRG 2011 (2304)
Q Consensus 1932 ~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~G 2011 (2304)
+++|||+|||+|+|||||||++. +.||+|++++++|++|||++|+++++|||+|+||+|
T Consensus 320 ~~iV~G~arl~G~~Vgvian~~~---------------------~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpG 378 (530)
T 3iav_A 320 PNILTGFGRVEGRPVGIVANQPM---------------------QFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPG 378 (530)
T ss_dssp TTEEEEEEEETTEEEEEEEECTT---------------------SGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred ceEEEEEEEECCEEEEEEEecCc---------------------ccCCCCCHHHHHHHHHHHHHHHhcCCCEEEEeeCCC
Confidence 99999999999999999999543 348999999999999999999999999999999999
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhh
Q 000086 2012 FSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIK 2090 (2304)
Q Consensus 2012 f~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~ 2090 (2304)
|++|.++|+.|++++||++++++++++||+|++|+ |+++||+|++|+++ +++|+ +||||+|+++||+|||+++|+
T Consensus 379 f~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~--g~~~GGa~~am~~~~~~~d~--~~awp~a~~~Vm~~egaa~il 454 (530)
T 3iav_A 379 FLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVIT--RKAFGGAYVVMGSKHLGADL--NLAWPTAQIAVMGAQGAVNIL 454 (530)
T ss_dssp BCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHH
T ss_pred CCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEe--CCcchHHHHHhcCCCCCCCE--EEEcCCceEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999 67799999999976 89999 999999999999999999999
Q ss_pred cchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCccee
Q 000086 2091 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2170 (2304)
Q Consensus 2091 ~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~v 2170 (2304)
||++.. +. . ++.+++++ ++..+|.+.+.+|+++++.|+||+|
T Consensus 455 ~r~~~~-------------------~~--~---~d~~~~~~--------------~~~~~y~~~~~~p~~aa~~~~vD~V 496 (530)
T 3iav_A 455 HRRTIA-------------------DA--G---DDAEATRA--------------RLIQEYEDALLNPYTAAERGYVDAV 496 (530)
T ss_dssp TSTTTS-------------------TT--C---TTCHHHHH--------------HHHHHHHHHHSSSHHHHHTTSSSEE
T ss_pred hhhhhh-------------------hc--c---cCHHHHHH--------------HHHHHHHHhcCCHHHHHhcCCCCcc
Confidence 998711 00 0 01112222 2344555655677789999999999
Q ss_pred cCccchHHHHHHHHHH
Q 000086 2171 VDWDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2171 i~~~~tR~~~~~~L~r 2186 (2304)
|+|++||+++...|+.
T Consensus 497 IdP~~TR~~l~~~l~~ 512 (530)
T 3iav_A 497 IMPSDTRRHIVRGLRQ 512 (530)
T ss_dssp CCGGGHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999998864
No 10
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=100.00 E-value=3e-78 Score=770.14 Aligned_cols=420 Identities=23% Similarity=0.357 Sum_probs=372.0
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++|||||++||||+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+|+|
T Consensus 95 ~dgvVtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGGARmq--eg~~sl~~ 166 (548)
T 2bzr_A 95 GDGVVTGYGTI------DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQ--EGVVSLGL 166 (548)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCSCCGG--GTTHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEcCccccCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCCCCch--hHHHHHHH
Confidence 57799999876 99999999999999999999999999999999999999999999999999999 88999877
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+|. .+.+.||. ||+
T Consensus 167 ~~------------~i~~----------------------------------------~~~~~s~~-----------iP~ 183 (548)
T 2bzr_A 167 YS------------RIFR----------------------------------------NNILASGV-----------IPQ 183 (548)
T ss_dssp HH------------HHHH----------------------------------------HHHHTTTT-----------SCE
T ss_pred HH------------HHHH----------------------------------------HHHHhcCC-----------CcE
Confidence 65 1221 12223443 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++|||||+||+||.++|||++||+++ +.|+||||++|++++|+++ ++++|||+++|. .||++|++++||.++++.
T Consensus 184 Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~aGP~vI~~~~ge~v--~~e~lggae~h~~~sG~~d~vv~d~~~~~~~ 261 (548)
T 2bzr_A 184 ISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDY 261 (548)
T ss_dssp EEEECSEEESGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSSCCSEEESSHHHHHHH
T ss_pred EEEecCCCchHHHHHHHhCCeEEeccCceeEEeccHHHHHHHhCCcC--ChHhcccHHHHhhccCceeEEeCCHHHHHHH
Confidence 999999999999999999999999998 8999999999999999999 778999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCC-------CCCCC----CCccccC---CCCChHHHhhcccCCCCCcccccccCCCceec
Q 000086 1861 ILKWLSYVPPHIGGALPIISPL-------DPPDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVET 1926 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~-------d~~~r----~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~ 1926 (2304)
+++||+|+|.++.+.+|..++. |++++ ...++|. +|||+|++|++ |||++ |+|+
T Consensus 262 ~r~lls~lp~~~~~~~p~~~~~~~~~~~~d~p~~~~~~l~~~vp~~~~~pyd~r~~I~~-----------l~D~~-f~E~ 329 (548)
T 2bzr_A 262 VRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITR-----------LLDDE-FLEI 329 (548)
T ss_dssp HHHHHTTSCSSTTSCCCCCCCCCCCSSGGGSCCHHHHHGGGTSCSSTTCCCCTHHHHHH-----------HSSSC-CEEE
T ss_pred HHHHHHhcCccCcccCCCCCccccccccCCCCCCChHHHhhhCCCCCCCCCCHHHHHHH-----------HcCCC-eEEe
Confidence 9999999999888877776664 66665 3567888 89999999997 79998 9999
Q ss_pred ccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEE
Q 000086 1927 LEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFIL 2006 (2304)
Q Consensus 1927 ~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l 2006 (2304)
+++|++++|||+|||+|+|||||||+++. .||+|++++++|++|||++|+++++|||+|
T Consensus 330 ~~~~~~~vV~G~ari~G~~Vgvian~~~~---------------------~~G~l~~~~a~Kaar~i~~a~~~~iPlv~l 388 (548)
T 2bzr_A 330 QAGYAQNIVVGFGRIDGRPVGIVANQPTH---------------------FAGCLDINASEKAARFVRTCDCFNIPIVML 388 (548)
T ss_dssp STTSSTTEEEEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccCccEEEEEEEECCEEEEEEEECCcc---------------------cCCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999997553 489999999999999999999999999999
Q ss_pred ecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccc
Q 000086 2007 ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2007 ~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
+||+||++|.++|+.|++++|+++++++++++||+|++|+ |+++||+|++|+++ +++|+ +||||+|+++||+|||
T Consensus 389 vDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~--g~~~Ggg~~am~~~~~~~d~--~~awp~a~i~Vmgpeg 464 (548)
T 2bzr_A 389 VDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVIT--RKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASG 464 (548)
T ss_dssp EEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred eeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEe--CCcchHHHHHhccccCCCCE--EEEcCCCEEEecCHHH
Confidence 9999999999999999999999999999999999999999 77899999999874 99999 9999999999999999
Q ss_pred hhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcC
Q 000086 2086 MIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKG 2165 (2304)
Q Consensus 2086 ~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G 2165 (2304)
+++|+||++. +.++ +. .++.++++ +++..+|.+.|++|.++++.|
T Consensus 465 aa~Il~r~~~--~~~~--------------~~-----g~~~~~~~--------------~~~~~~y~~~~~~p~~~a~~g 509 (548)
T 2bzr_A 465 AVGFVYRQQL--AEAA--------------AN-----GEDIDKLR--------------LRLQQEYEDTLVNPYVAAERG 509 (548)
T ss_dssp HHHHHTCCC-------------------------------CHHHH--------------HHHHHHHHHHHSBSHHHHHTT
T ss_pred HHHHHhhhHH--hhhh--------------cc-----cccHHHHH--------------HHHHHHHHHhhCCHHHHHhcC
Confidence 9999999861 1110 00 01122222 234567889999999999999
Q ss_pred CcceecCccchHHHHHHHHHHH
Q 000086 2166 VIKEVVDWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2166 ~Id~vi~~~~tR~~~~~~L~r~ 2187 (2304)
+||+||+|++||++|+++|+..
T Consensus 510 ~iD~II~p~~tR~~l~~~L~~l 531 (548)
T 2bzr_A 510 YVGAVIPPSHTRGYIGTALRLL 531 (548)
T ss_dssp SSSEECCGGGHHHHHHHHHHHT
T ss_pred CCceeeCHHHHHHHHHHHHHHH
Confidence 9999999999999999999754
No 11
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=100.00 E-value=5.9e-78 Score=761.56 Aligned_cols=412 Identities=24% Similarity=0.372 Sum_probs=366.1
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+|++
T Consensus 92 ~dgVVtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGGARmq--eg~~sl~~ 163 (531)
T 3n6r_B 92 GDGVVTGWGTI------NGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQ--EGVDSLAG 163 (531)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGG--GTHHHHHH
T ss_pred CCCEEEEEEEE------CCEEEEEEEECCCcccccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCccccC--cccchhhh
Confidence 57899999886 99999999999999999999999999999999999999999999999999999 89999876
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
++ .+| ..+.+.||. ||+
T Consensus 164 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 180 (531)
T 3n6r_B 164 YG------------EVF----------------------------------------QRNIMASGV-----------VPQ 180 (531)
T ss_dssp HH------------HHH----------------------------------------HHHHHTTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHHhCC-----------CCE
Confidence 65 111 112333443 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++|+|||+||+||.++++|++||+++ +.|+|+||++|++++|+++ +.++|||+++|. +||++|++++||.++++.
T Consensus 181 Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~aGP~vI~~~~ge~v--~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~ 258 (531)
T 3n6r_B 181 ISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEQV--SAEELGGATTHTRKSSVADAAFENDVEALAE 258 (531)
T ss_dssp EEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTTSCCSEEESSHHHHHHH
T ss_pred EEEEeCCcchHHHHHhhhCCEEEEecCCceEeecCHHHHHHHhCCcc--ChhhcchHHHHhhccCcceEEeCCHHHHHHH
Confidence 999999999999999999999999997 8999999999999999999 899999999995 899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCe
Q 000086 1861 ILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1933 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~ 1933 (2304)
+++||+|||.++.+.+|..++.|++++. ..++|. +|||+|++|++ |||+++|+|++++||++
T Consensus 259 ~r~lls~Lp~~~~~~~p~~~~~d~~~~~~~~l~~ivp~~~~~pyd~r~vI~~-----------l~D~~~f~E~~~~~~~~ 327 (531)
T 3n6r_B 259 VRRLVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHK-----------LADEGDFYEIQEEFAKN 327 (531)
T ss_dssp HHHHHTTSCSSSSSCCCBCCCCSCTTCCCGGGGGTSCSSTTCCCCHHHHHHH-----------HSTTSCCEEESTTSSTT
T ss_pred HHHHHHhccccCCCCCCCCCCCCCcccChHHHHhhCCCCcCCCcCHHHHHHh-----------ccCCcceEEecccCCCc
Confidence 9999999999988888877776776654 356887 89999999997 89999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCC
Q 000086 1934 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 2013 (2304)
Q Consensus 1934 vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~ 2013 (2304)
+|||+|||+|+|||||||++. +.||+|++++++|++|||++|+++++|||+|+||+||+
T Consensus 328 iV~G~arl~G~~Vgvian~~~---------------------~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~lvDtpGf~ 386 (531)
T 3n6r_B 328 IITGFIRLEGRTVGVVANQPL---------------------VLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFL 386 (531)
T ss_dssp EEEEEEEETTEEEEEEEECTT---------------------TGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECSBC
T ss_pred EEEEEEEECCEEEEEEEeccc---------------------ccCCCCCHHHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Confidence 999999999999999999543 34799999999999999999999999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcc
Q 000086 2014 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFR 2092 (2304)
Q Consensus 2014 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r 2092 (2304)
+|.++|+.|++++||++++++++++||+|++|+ |+.+||+|++|+++ +++|+ +||||+|+++||+|||+++|+||
T Consensus 387 ~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~--g~~~Ggg~~am~~~~~~~d~--~~awp~A~i~Vm~pegaa~Il~r 462 (531)
T 3n6r_B 387 PGTSQEYGGVIKHGAKLLYAYGEATVPMVTVIT--RKAYGGAYVVMSSKHLRADF--NYAWPTAEVAVMGAKGATEIIHR 462 (531)
T ss_dssp CSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHCC
T ss_pred CCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEc--CCccchhhhhccCccCCCCe--EEEcCCceEecCCHHHHHHHHhc
Confidence 999999999999999999999999999999999 67799999999875 99999 99999999999999999999999
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecC
Q 000086 2093 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172 (2304)
Q Consensus 2093 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~ 2172 (2304)
++. ++ +++ .+++ ..+|.+.+.+|+++++.|+||+||+
T Consensus 463 ~~~-------------------~~------~~~---~~~~---------------~~~y~~~~~~p~~aa~~~~vD~vId 499 (531)
T 3n6r_B 463 GDL-------------------GD------PEK---IAQH---------------TADYEERFANPFVASERGFVDEVIQ 499 (531)
T ss_dssp TTT-------------------TS------TTH---HHHH---------------HHHHHHHHSSSHHHHHHTSSSEECC
T ss_pred ccc-------------------cc------hhH---HHHH---------------HHHHHHHhcCHHHHHhcCccCcccC
Confidence 761 00 011 1111 2334444556778999999999999
Q ss_pred ccchHHHHHHHHHH
Q 000086 2173 WDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2173 ~~~tR~~~~~~L~r 2186 (2304)
|++||+++...|+-
T Consensus 500 P~~TR~~l~~~l~~ 513 (531)
T 3n6r_B 500 PRSTRKRVARAFAS 513 (531)
T ss_dssp GGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988864
No 12
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=100.00 E-value=1.1e-75 Score=806.66 Aligned_cols=447 Identities=30% Similarity=0.503 Sum_probs=403.5
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000086 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2304)
Q Consensus 45 ~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~I 123 (2304)
|+||+||||+|+|++|++++|+|+++|++++ +++++.+..+.+.++||+++.+|+. ....+|+|++.|
T Consensus 1 M~~~kkVLIagrGeia~riiraa~elGi~vV-----------av~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~I 69 (1150)
T 3hbl_A 1 MKQIKKLLVANRGEIAIRIFRAAAELDISTV-----------AIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERI 69 (1150)
T ss_dssp --CCCEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EEEcCCcccchhhhhcceeeecCCCCCccccccCHHHH
Confidence 4689999999999999999999999999885 4445667889999999999999865 445799999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcc
Q 000086 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~ 203 (2304)
+++|+++++|+||||||+++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||..
T Consensus 70 i~~a~~~~~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~----------- 138 (1150)
T 3hbl_A 70 IDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTD----------- 138 (1150)
T ss_dssp HHHHHHTTCSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCS-----------
T ss_pred HHHHHHhCCCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred cccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccc
Q 000086 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQ 279 (2304)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g 279 (2304)
..+.+.+++.++++++||||||||+.|+||+|+++|++.+||.++++.+..+.. +.+++||+|+++
T Consensus 139 ----------~~v~s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G 208 (1150)
T 3hbl_A 139 ----------GPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDN 208 (1150)
T ss_dssp ----------SCBCSSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSS
T ss_pred ----------cCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCC
Confidence 015667778888999999999999999999999999999999999998876643 468999999999
Q ss_pred cceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcE
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~ 359 (2304)
++|++|++++|++|+++++++|+|++||+|||.++.+|++.++++..++|.+.+.++++++||+|++++||+++ ++++
T Consensus 209 ~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd--~d~~ 286 (1150)
T 3hbl_A 209 PKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEF 286 (1150)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE--TTEE
T ss_pred CcEEEEEEEEeCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE--CCeE
Confidence 89999999999999999999999999999999999999988999999999999999999999999999999999 3499
Q ss_pred EEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000086 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2304)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~g 439 (2304)
||||||||+|++|+++|+++|+|++++++++++|.+++.. .+.+ ..|....++|
T Consensus 287 y~iEINpR~~g~~~vte~~tGvDlv~~~i~ia~G~~L~~~------------------------~~~~--~~q~~i~~~G 340 (1150)
T 3hbl_A 287 FFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGE------------------------EINM--PQQKDITTLG 340 (1150)
T ss_dssp EEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTST------------------------TTCC--CCGGGCCCCS
T ss_pred EEEEEeCCCCCCcceeehhcCCCHHHHHHHHHCCCCCCcc------------------------cccc--ccccccccce
Confidence 9999999999999999999999999999999999998631 0011 1344567789
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000086 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2304)
Q Consensus 440 hai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2304)
|+|+||||+|||..+|.|++|+|+.+.+|.+++|+++.+ +.+|..|+++|||++||||++|+||++|+++|.+||++++
T Consensus 341 ~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~ 420 (1150)
T 3hbl_A 341 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMR 420 (1150)
T ss_dssp EEEEEEECSEEGGGTSEECCCCCCEEECCCCTTEEEEESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCE
T ss_pred EEEEEEEeccCCccccCCCCceEEEEEcCCCCceeccccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceE
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
|+| ++||++||+++|+||+|++|+++|+|||++
T Consensus 421 i~G-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 453 (1150)
T 3hbl_A 421 IRG-VKTNIPFLINVMKNKKFTSGDYTTKFIEET 453 (1150)
T ss_dssp EES-SCCSHHHHHHHHHCHHHHHSCCCTTHHHHC
T ss_pred EeC-ccCCHHHHHHHhCCHHHcCCCcccchhhCC
Confidence 999 999999999999999999999999999974
No 13
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=100.00 E-value=7.9e-78 Score=766.60 Aligned_cols=466 Identities=18% Similarity=0.235 Sum_probs=379.2
Q ss_pred cccccccccCCCCCCcCCccccccCCC-----CCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSPG-----LNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLA 1668 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~g-----~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~r 1668 (2304)
.++.+++||+ | +|.|+....+ ....|||+++.++ +||+|+|++||+||++||+|+.+++|+.|
T Consensus 65 RERI~~LlD~--G----SF~El~~~~~~~~~~~~~dgVVtG~G~I------~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~R 132 (588)
T 3gf3_A 65 MQRINALIDP--G----TWCPLNSLFNPENNKFGTTNIVNGLGRV------DGKWVYIVASDNKKMAGAWVPGQAENLIR 132 (588)
T ss_dssp HHHHHHHSCT--T----CCEEESTTCCTTCCTTSSCSEEEEEEEE------TTEEEEEEEECTTSGGGCBCTTHHHHHHH
T ss_pred HHHHHHHcCC--C----ceEEccccccccccCCCCCcEEEEEEEE------CCEEEEEEEECCcccCCCCCHHHHHHHHH
Confidence 4666777887 6 4555544321 1246899999886 99999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCCCCCCCchhhhhh-hhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeE
Q 000086 1669 VTDLACAKKLPLIYLAANSGARIGVAEEVKA-CFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWV 1747 (2304)
Q Consensus 1669 a~e~A~~~~lP~I~l~~s~GARi~~~e~v~~-l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~ 1747 (2304)
++|+|.++|+|+|+|.+||||||+++|++++ ++ |++.+|... .++
T Consensus 133 a~e~A~~~~lPvI~l~dSgGArl~~qe~~~~~l~------------~~g~if~~~---~~l------------------- 178 (588)
T 3gf3_A 133 CSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRR------------GGGTPFFRN---SEL------------------- 178 (588)
T ss_dssp HHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTT------------STTHHHHHH---HHH-------------------
T ss_pred HHHHHHHcCCCEEEEEcCCCcCcccccccccchh------------hHHHHHHHH---HHH-------------------
Confidence 9999999999999999999999998899886 53 444454321 111
Q ss_pred EEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHH------
Q 000086 1748 VDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALN------ 1821 (2304)
Q Consensus 1748 i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~------ 1821 (2304)
|+ ..||+|++|+|+|+|||||.++++|++|+++++.|+|+||++|+
T Consensus 179 ------------------s~----------~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g 230 (588)
T 3gf3_A 179 ------------------NQ----------LGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG 230 (588)
T ss_dssp ------------------HH----------TTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------
T ss_pred ------------------hc----------CCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc
Confidence 11 12799999999999999999888999999999999999999996
Q ss_pred -----------HhhcccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCC---CC
Q 000086 1822 -----------KLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDP---PD 1886 (2304)
Q Consensus 1822 -----------~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~---~~ 1886 (2304)
+.++.+.|.|+++|||+++|. .||++|++++||.++++.+|+||||||+++.+.+|..++.+| ++
T Consensus 231 ~~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~sGv~d~~a~de~~al~~~r~~ls~Lp~~~~~~~~~~~~~~p~~~~~ 310 (588)
T 3gf3_A 231 YIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDETGFFREVYQNDLGVIDGIKKYISYLPAYNLEFFRVDTPKAPQLPAE 310 (588)
T ss_dssp ------CHHHHHHHHHHHHTTCCCTTBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTSCCCCGGGGCSSCCCCCSSCGG
T ss_pred cccccchhhhhhhhccccccChhhccchhhhccccccceEEeCCHHHHHHHHHHHHHhCCccCCCcCCCCCCCCCcCChH
Confidence 344444444899999999998 799999999999999999999999999988776665444332 23
Q ss_pred CCCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1887 RPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1887 r~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
+...++|. +|||+|++|++ |||+++|+|++++||+++|||+|||+|+|||||||+++...
T Consensus 311 ~L~~ivP~~~~~pyD~r~vI~~-----------i~D~~~f~E~~~~~g~~iV~G~arl~G~pVgvvan~~~~~~------ 373 (588)
T 3gf3_A 311 DLYSIIPMNQKRPYDIYEVIAR-----------LFDNSEFSEYKKGYGPEMVTGLAKVNGLLVGVIANVQGLLM------ 373 (588)
T ss_dssp GHHHHSCSSTTCCCCHHHHHHH-----------HSGGGBCEESSTTSSTTEEEEEEEETTEEEEEEEECCSEEE------
T ss_pred HHHhhCCCCCCCCCCHHHHHHH-----------HcCCCcceeecccccccEEEEEEEECCEEEEEEEecCCccc------
Confidence 34467887 89999999997 79999999999999999999999999999999999876541
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.+|.+.++ ..+.||+|+|++++|++|||++|++|+||||+|+||+||++|.++|+.|++++||++++++++++||+|+
T Consensus 374 -~~p~~~~~-~~~~~G~l~~~~a~Kaarfi~lcd~f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~it 451 (588)
T 3gf3_A 374 -NYPEYKQN-SVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLE 451 (588)
T ss_dssp -TCCTTSSS-CEEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEE
T ss_pred -ccccchhh-hhccCCCcCHHHHHHHHHHHHHhhhcCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 23455554 6678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCC
Q 000086 2044 YIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRT 2122 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~ 2122 (2304)
+|+ |+.+||+|++|+++ ++++++.+||||+|+++||+|||+++|+||++.. . .++.+..++
T Consensus 452 vI~--g~~~Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEgaa~Il~~~~~~--~--------------~~~~~~~~~ 513 (588)
T 3gf3_A 452 ITI--RKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLV--K--------------AKKAGEDLQ 513 (588)
T ss_dssp EES--SEEETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHH--H--------------C-------C
T ss_pred EEc--CCccHHHHHHhcccccCCccceEEECCCceEEeCCHHHHHHHHhhhHHh--h--------------hhccccccc
Confidence 999 66799999999875 8888667999999999999999999999997611 0 111111112
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHH
Q 000086 2123 LAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2123 ~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~ 2187 (2304)
++ .+.. .++..+|.+.. +|+++++.|+||+||+|++||.++...|..-
T Consensus 514 ~~-~~~~---------------~~~~~~y~~~~-~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~ 561 (588)
T 3gf3_A 514 PI-IGKM---------------NDMIQMYTDKS-RPKYCTEKGMVDEIVDMTEVRPYIQAFTEAA 561 (588)
T ss_dssp HH-HHHH---------------HHHHHHHHHTT-SHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred hH-HHHH---------------HHHHHHHHHhC-CHHHHHhcCCCCeeeCHHHHHHHHHHHHHHH
Confidence 21 0111 23344555543 6888999999999999999999998776653
No 14
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=100.00 E-value=2.3e-77 Score=766.05 Aligned_cols=462 Identities=18% Similarity=0.228 Sum_probs=391.5
Q ss_pred cccccccccCCCCCCcCCccccccCC-----CCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSP-----GLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLA 1668 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~-----g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~r 1668 (2304)
.++.+++||+ | +|.|....- .....|||++..++ +||+|+|++||+||++||+|+.+++|+.|
T Consensus 64 reRI~~LlD~--g----sF~E~~~~y~~~~~~~~~dgvVtG~G~I------~Gr~v~v~a~D~t~~gGs~g~~~~~Ki~r 131 (587)
T 1pix_A 64 LQRIEKLVEP--G----SWRPLNTLFNPQGNKNGSVAIVKGLGRV------NGKWCVVVASDNKKLAGAWVPGQAECLLR 131 (587)
T ss_dssp HHHHHHHSCT--T----CCEEESTTCCTTCCTTSCCSEEEEEEEE------TTEEEEEEEECTTTTTTEECTTHHHHHHH
T ss_pred HHHHHHHcCC--C----CceEhhhhcchhhhcCCCCcEEEEEEEE------CCEEEEEEEECCccccCCCCHHHHHHHHH
Confidence 4666777877 5 344443211 22358899999886 99999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEE
Q 000086 1669 VTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVV 1748 (2304)
Q Consensus 1669 a~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i 1748 (2304)
++|+|.++|+|+|+|.+||||||| |++.+++. ..|++.+|... .+
T Consensus 132 ~~e~A~~~~lPvI~l~dSgGArlq--e~~~~l~~---------~~~~g~i~~~~---~~--------------------- 176 (587)
T 1pix_A 132 ASDTAKTLHVPLVYVLNCSGVKFD--EQEKVYPN---------RRGGGTPFFRN---AE--------------------- 176 (587)
T ss_dssp HHHHHHHHTCCEEEEECCCEECGG--GHHHHSSS---------TTSTTHHHHHH---HH---------------------
T ss_pred HHHHHHHcCCCEEEEEeCCCCCcc--ccchhccc---------cccHHHHHHHH---HH---------------------
Confidence 999999999999999999999999 66666531 13555555321 11
Q ss_pred EeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHH-----
Q 000086 1749 DSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNK----- 1822 (2304)
Q Consensus 1749 ~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~----- 1822 (2304)
.||+ .||+|++|+|+|+|||||. +++|++||+++ +.|+|+||++|++
T Consensus 177 ----------------ls~~----------giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~~ 229 (587)
T 1pix_A 177 ----------------LNQL----------GIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPKG 229 (587)
T ss_dssp ----------------HHHT----------TCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSSS
T ss_pred ----------------HhCC----------CCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhcccc
Confidence 1111 2699999999999999999 99999999886 8999999999999
Q ss_pred ------------hhcccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-
Q 000086 1823 ------------LLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP- 1888 (2304)
Q Consensus 1823 ------------~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~- 1888 (2304)
++|+++ ++++|||+++|. .||++|++++||.++++.+++||+|+|.++.+++|..++ |+++++
T Consensus 230 ~~d~~~A~el~~~tge~v--~~e~lgga~~h~~~~GvvD~vv~~e~~a~~~~r~~ls~lp~~~~~~~~~~~~-~~p~~~~ 306 (587)
T 1pix_A 230 HVDLEYANEIADMVDRTG--KTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGMLPKYDPEFFRVDDP-KAPAFPA 306 (587)
T ss_dssp SCCHHHHHHHHHHHHTTC--CCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTSCCCCGGGGBSSCC-CCCSSCG
T ss_pred ccchhHHHHHHHHhCCcc--ChhhcccHHHHHhhcCceeEecCCHHHHHHHHHHHHHhCCccCCCCCCCCCC-CCCCCCh
Confidence 999999 899999999998 699999999999999999999999999988777776554 555553
Q ss_pred ---CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccC
Q 000086 1889 ---VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPA 1962 (2304)
Q Consensus 1889 ---~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pa 1962 (2304)
+.++|. +|||+|++|++ |||.++|+|++++|++++|||+|||+|+|||||||+++.. |+
T Consensus 307 ~~l~~ivp~~~~~pyd~r~vI~~-----------l~D~~~f~E~~~~~~~~iV~G~arl~G~~VgvIan~~g~~----~~ 371 (587)
T 1pix_A 307 DDLYSMVPLNDKRAYDIYNVIAR-----------LFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVANVQGLL----MN 371 (587)
T ss_dssp GGHHHHSCSSTTSCCCHHHHHHT-----------TSGGGBCEESSTTSSTTEEEEEEEETTEEEEEEEECCSEE----TT
T ss_pred HHHhhhCCCCCCCCccHHHHHHH-----------hCCCceEEEeccccCCcEEEEEEEECCEEEEEEEeccCcc----cc
Confidence 456787 99999999997 8999999999999999999999999999999999987643 56
Q ss_pred CCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEE
Q 000086 1963 DPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1963 dpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i 2042 (2304)
||.. .++...+.+|+|+|++++|++|||++|++|++|||+|+||+||++|.++|+.|++++||++++++++++||+|
T Consensus 372 ~P~~---~~~~~~~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~i 448 (587)
T 1pix_A 372 YPEY---KAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQF 448 (587)
T ss_dssp CCTT---SCTTCCEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEE
T ss_pred cccc---ccccccccCCCcCHHHHHHHHHHHHHhhcCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6653 3334667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcCCchhhhhccc-ccCC--ccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhc
Q 000086 2043 VYIPMMAELRGGAWVVVDS-RINS--DHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKN 2119 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~-~i~~--d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~ 2119 (2304)
++|+ |+++||+|++|++ .+++ |+ +||||+|+++||+|||+++|+||++. +.++ +.|
T Consensus 449 tvI~--g~~~Ggg~~am~~~~~~~~~d~--~~a~p~A~~~Vm~pegaa~Il~r~~~--~~~~--------------~~g- 507 (587)
T 1pix_A 449 EITL--RKGTAAAHYVLGGPQGNDTNAF--SIGTAATEIAVMNGETAATAMYSRRL--AKDR--------------KAG- 507 (587)
T ss_dssp EEEC--SEEETTHHHHTTCTTCTTTEEE--EEECTTCEEESSCHHHHHHHHHHHHH--HHHH--------------HTT-
T ss_pred EEEc--CCCccHHHHHhcCcccCcccce--eeeccCCeEecCCHHHHHHHHHhhhh--hhhh--------------hcC-
Confidence 9999 7789999999886 5999 99 99999999999999999999998772 2221 111
Q ss_pred cCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHH
Q 000086 2120 NRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2120 ~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~ 2187 (2304)
+++++.+++.+ +++.+|.+ |.+|.+++++|+||+||+|++||++|+++|+..
T Consensus 508 -~~~~~~~~~~~--------------~~~~~y~~-~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~ 559 (587)
T 1pix_A 508 -KDLQPTIDKMN--------------NLIQAFYT-KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAA 559 (587)
T ss_dssp -CCCHHHHHHHH--------------HHHHHHHH-TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHH
T ss_pred -CChHHHHHHHH--------------HHHHHHHH-hCCHHHHHhcCCCccccCHHHHHHHHHHHHHHH
Confidence 33344443333 34667877 899999999999999999999999999999754
No 15
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=100.00 E-value=6.6e-77 Score=753.96 Aligned_cols=447 Identities=22% Similarity=0.300 Sum_probs=379.6
Q ss_pred cccccccccCCCCCCcCCccccccCCCC-------CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSPGL-------NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFF 1666 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~g~-------n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~ 1666 (2304)
.++.+++||+ |+ .|.|.....+. ...|||++..++ +||+|+|++||+||++||+|+.+++|+
T Consensus 77 ReRI~~LlD~--gS---~F~E~~~l~~~~~y~~~~~~dgVVtG~G~I------~Gr~v~V~a~D~tv~gGS~g~~~~~Ki 145 (555)
T 3u9r_B 77 RERINRLLDP--GS---PFLELSALAAHEVYGEEVAAAGIVAGIGRV------EGVECMIVGNDATVKGGTYYPLTVKKH 145 (555)
T ss_dssp HHHHHHHSCT--TC---CEEEECTTTTTTTSSSCCGGGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHH
T ss_pred HHHHHHHcCC--CC---CEEEEccccccccccccCCCCcEEEEEEEE------CCEEEEEEEECCccccCCCCHHHHHHH
Confidence 4667778887 51 26665443332 257899999886 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceee
Q 000086 1667 LAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRW 1746 (2304)
Q Consensus 1667 ~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~ 1746 (2304)
.|++|+|.+.|+|+|+|.+||||||++++++++++ .+|+.+|... .++
T Consensus 146 ~ra~e~A~~~~lPvI~l~dSgGARl~~q~~~~~~~-----------~~~~~i~~~~---~~l------------------ 193 (555)
T 3u9r_B 146 LRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDR-----------EHFGRIFFNQ---ANM------------------ 193 (555)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCBCGGGGGGTSSST-----------TSTTHHHHHH---HHH------------------
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcceeeccc-----------ccHHHHHHHH---HHH------------------
Confidence 99999999999999999999999999889988763 3455555321 111
Q ss_pred EEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhc
Q 000086 1747 VVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLG 1825 (2304)
Q Consensus 1747 ~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG 1825 (2304)
|| ..+|+|++|+|+|+|||||.++++|++||+++ +.|+|+||++|++++|
T Consensus 194 -------------------s~----------~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~aGP~vik~~~g 244 (555)
T 3u9r_B 194 -------------------SA----------RGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATG 244 (555)
T ss_dssp -------------------HH----------TTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSSCHHHHHHHHC
T ss_pred -------------------hc----------CCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEccHHHHHHHhc
Confidence 11 12699999999999999999999999999875 7999999999999999
Q ss_pred ccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCC---CCCCCCCccccC---CCCC
Q 000086 1826 REVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPL---DPPDRPVEYLPE---NSCD 1898 (2304)
Q Consensus 1826 ~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~---d~~~r~~~~~P~---~~yD 1898 (2304)
+++ +.++|||+++|. .||++|++++||.+++..+++||+|||.++.+++|..++. +++++...++|. +|||
T Consensus 245 e~~--~~e~LGGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~p~~~~~~l~~ivP~~~~~pyd 322 (555)
T 3u9r_B 245 EVV--SAEELGGADVHCKVSGVADHYAEDDDHALAIARRCVANLNWRKQGQLQCRAPRAPLYPAEELYGVIPADSKQPYD 322 (555)
T ss_dssp CCC--CHHHHHBHHHHHHTTCSCSEEESSHHHHHHHHHHHHHTSCCCCCCCCCCCCCCCCSSCGGGHHHHSCSSTTSCCC
T ss_pred Ccc--ChhhccchhhhhhccCceeEEeCCHHHHHHHHHHHHHhCCccCCCCCCCCCCCCCCCChHHHHhhCCCCccCCcc
Confidence 998 889999999997 7999999999999999999999999999887776654433 334445667887 8999
Q ss_pred hHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCC
Q 000086 1899 PRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAG 1978 (2304)
Q Consensus 1899 ~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~g 1978 (2304)
+|++|++ ++|.++|+|+++.||+++|||+|||+|+||||||| .
T Consensus 323 ~r~~i~~-----------i~D~~~f~E~~~~~g~~iV~G~ari~G~~Vgvian--------------------------~ 365 (555)
T 3u9r_B 323 VREVIAR-----------LVDGSEFDEFKALFGTTLVCGFAHLHGYPIAILAN--------------------------N 365 (555)
T ss_dssp THHHHTT-----------TSGGGBCEEESTTSSTTEEEEEEEETTEEEEEEEE--------------------------C
T ss_pred HHHHHhh-----------hcCCceeEEeeccCCCcEEEEEEEECCEEEEEEEe--------------------------C
Confidence 9999997 79999999999999999999999999999999999 3
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhh
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVV 2058 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv 2058 (2304)
|+|++++++|++|||++|++|+||||+|+||+||++|.++|+.|++++||++++++++++||+|++|++ +.++||+|++
T Consensus 366 G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g-~~~Ggg~~am 444 (555)
T 3u9r_B 366 GILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIG-GSFGAGNYGM 444 (555)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEE-EEETTHHHHT
T ss_pred CccCHHHHHHHHHHHHHHhcCCCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeC-CccchhhHhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999994 4444456666
Q ss_pred cccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH-H
Q 000086 2059 VDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAR-E 2137 (2304)
Q Consensus 2059 ~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r-e 2137 (2304)
+++.+++|+ +||||+|+++||+|||++.|.|..+ ++++++.++++++++.+++++++.++ +
T Consensus 445 ~~~~~~~d~--~~a~p~A~i~Vmgpegaa~il~~~~----------------~~~~~~~g~~~~~~~~~~~~~~~~~~y~ 506 (555)
T 3u9r_B 445 CGRAYDPRF--LWMWPNARIGVMGGEQAAGVLAQVK----------------REQAERAGQQLGVEEEAKIKAPILEQYE 506 (555)
T ss_dssp TCGGGCCSE--EEECTTCEEESSCHHHHHHHHHHHH----------------HHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCccCCCCe--EEEcCCcEEEcCCHHHHHHHHHHHH----------------HHHHHhccCCCCcchHHHHHHHHHHHHH
Confidence 666799999 9999999999999999999988532 01234444566777777777766554 4
Q ss_pred HhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHH
Q 000086 2138 KQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2138 ~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r 2186 (2304)
++.. |+.+++.|+||+||+|++||+++...|+-
T Consensus 507 ~~~~----------------p~~aa~r~~vD~vIdP~~TR~~l~~~l~~ 539 (555)
T 3u9r_B 507 HQGH----------------PYYSSARLWDDGVIDPAQTREVLALALSA 539 (555)
T ss_dssp HHHS----------------HHHHHHTTSSSCBCCGGGHHHHHHHHHHH
T ss_pred HhCC----------------HHHHhhccccCcccChHHHHHHHHHHHHH
Confidence 4444 55688999999999999999999988864
No 16
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-76 Score=752.76 Aligned_cols=417 Identities=27% Similarity=0.406 Sum_probs=373.5
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++|||||++||||+++++|+.|++|+|.++|+|+|+|++||||||| |++.+|+|
T Consensus 78 ~dgvvtG~G~i------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~SGGaRmq--eg~~sl~~ 149 (522)
T 1x0u_A 78 GDGVVTGWGKV------DGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQ--EGALSLEG 149 (522)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChh--HHHHHHHH
Confidence 57799999876 99999999999999999999999999999999999999999999999999999 88999987
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+|. .+.+.||. ||+
T Consensus 150 ~~------------~i~~----------------------------------------~~~~~s~~-----------iP~ 166 (522)
T 1x0u_A 150 YG------------AVFK----------------------------------------MNVMASGV-----------IPQ 166 (522)
T ss_dssp HH------------HHHH----------------------------------------HHHHHTTT-----------SCE
T ss_pred HH------------HHHH----------------------------------------HHHHhCCC-----------CcE
Confidence 75 1111 11222333 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-c-ceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-Q-PIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGIS 1859 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~-~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~ 1859 (2304)
|+++||||+||+||.++|||++||+++ + .|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++
T Consensus 167 Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~aGP~vI~~~~ge~~--~~e~lggae~~~~~~G~~d~vv~~~~~~~~ 244 (522)
T 1x0u_A 167 ITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEITKVVLGEEV--SFQDLGGAVVHATKSGVVHFMVDSEQEAIN 244 (522)
T ss_dssp EEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESSCHHHHHHTTCCCC--CHHHHHBHHHHHHTTCCCSEEESCHHHHHH
T ss_pred EEEEcCCCchHHHHHHhcCCeEEEecCCccEEEecCHHHHHHHhCCcC--ChhhcchHHHHhhcCceeEEEeCCHHHHHH
Confidence 999999999999999999999999999 8 999999999999999999 678999999998 79999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCC
Q 000086 1860 AILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWAR 1932 (2304)
Q Consensus 1860 ~i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~ 1932 (2304)
.+++||+|+|.++.+.+|..++.|++++. ..++|. .+||+|++|+. |||++||+|+.++|++
T Consensus 245 ~~~~ll~~lp~~~~~~~~~~~~~d~p~~~~~~l~~v~p~~~~~~~~~r~~I~~-----------l~D~gsF~E~~~~~~~ 313 (522)
T 1x0u_A 245 LTKRLLSYLPSNNMEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREIIYK-----------IVDNGEFLEVHKHWAQ 313 (522)
T ss_dssp HHHHHHHHSCSSTTSCCCCCCCCCCSCCCSSSHHHHSCSSSSCCCCHHHHHHH-----------HSGGGCCEEETTTSCT
T ss_pred HHHHHHHhccccCccCCCCCCCCCCcccCchhHhhhccCCCCCCCCHHHHHHH-----------hCCCCceEEecCCCcc
Confidence 99999999999888888877777777764 346776 89999999997 8999999999999999
Q ss_pred eEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCC
Q 000086 1933 TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF 2012 (2304)
Q Consensus 1933 ~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf 2012 (2304)
++|||+|||+|+||||+|+|+++. ||+|++++++|++|||++|+++++|||+|+||+||
T Consensus 314 ~vVtG~ari~G~~V~via~d~~~~---------------------gG~l~~~~~~K~ar~i~~a~~~~~Plv~l~ds~G~ 372 (522)
T 1x0u_A 314 NIIVGFARIAGNVVGIVANNPEEF---------------------GGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGY 372 (522)
T ss_dssp TEEEEEEEETTEEEEEEEECTTTG---------------------GGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCB
T ss_pred cEEEEEEEECCEEEEEEEECCCcc---------------------CCCcCHHHHHHHHHHHHHHhhCCCCEEEEecCCCC
Confidence 999999999999999999976543 89999999999999999999999999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhccc-ccCCccceeecccCcEEEeeCccchhhhhc
Q 000086 2013 SGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKF 2091 (2304)
Q Consensus 2013 ~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~-~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~ 2091 (2304)
++|.++|+.|+++++|+++++++++++|+|++|+ |+++||+|.++++ .+++|+ +||||+|+++||+|||+++|+|
T Consensus 373 ~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~--g~~~GGg~~~~a~~a~~~D~--v~a~p~A~i~v~gpegaa~Il~ 448 (522)
T 1x0u_A 373 VPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIV--RKSYGGAHIAMSIKSLGADL--VYAWPTAEIAVTGPEGAVRILY 448 (522)
T ss_dssp CCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTCCGGGTCSE--EEECTTCEEESSCHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--CCcccHHHHHhcccccCCCE--EEEeCCCEEEecCHHHHHHHHh
Confidence 9999999999999999999999999999999999 7889999988887 489999 9999999999999999999999
Q ss_pred chhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceec
Q 000086 2092 RTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVV 2171 (2304)
Q Consensus 2092 r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi 2171 (2304)
|++ + ++ . ++.+++ .+++..+|.+.|++|.+++++|+||+||
T Consensus 449 r~~--i---~~--------------~------~d~~~~--------------~~~l~~~y~~~~~~~~~~~~~G~iD~II 489 (522)
T 1x0u_A 449 RKE--I---QQ--------------A------SNPDDV--------------LKQRIAEYRKLFANPYWAAEKGLVDDVI 489 (522)
T ss_dssp SSS--S---SS--------------S------SSSSSS--------------SHHHHHHHHHHHSSSHHHHHTTSSSEEC
T ss_pred hhh--h---hc--------------c------cCHHHH--------------HHHHHHHHHHhcCCHHHHHhcCCCcEeE
Confidence 975 1 10 0 000011 1235667889999999999999999999
Q ss_pred CccchHHHHHHHHHHH
Q 000086 2172 DWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2172 ~~~~tR~~~~~~L~r~ 2187 (2304)
+|+++|++|++.|+..
T Consensus 490 ~p~~tR~~L~~~L~~~ 505 (522)
T 1x0u_A 490 EPKDTRRVIVAGLEML 505 (522)
T ss_dssp CGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999753
No 17
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=100.00 E-value=2.4e-74 Score=750.37 Aligned_cols=533 Identities=56% Similarity=0.983 Sum_probs=476.4
Q ss_pred hhcccccCCCCCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEE
Q 000086 5 QRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLV 84 (2304)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v 84 (2304)
.|..++-|.+.+.+.- .....+++++|+.++||++|++||||+|+|+.|+++++++|++||+|++.+.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~kkILI~g~g~~a~~iira~~~~G~~vi~~d~gi~~v 83 (554)
T 1w96_A 11 ERHTELPGHFIGLNTV-------DKLEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFV 83 (554)
T ss_dssp HHHHHSCGGGCCSSBG-------GGSCCCHHHHHHHHTTCCBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEE
T ss_pred hhcccCCCCccccccc-------cccccccHHHHHhhcCCcccccEEEEECCCHHHHHHHHHHHHcCCcceecccCceEE
Confidence 3555666665543311 111227899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCC--CeEECC
Q 000086 85 AMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKG--IIFLGP 162 (2304)
Q Consensus 85 ~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~G--I~fiGP 162 (2304)
+++++.|.++++++.++||+++.+|+..+.++|.|++.|+++|+++++|+|+||||+.+|++.++..|++.| +.++||
T Consensus 84 ~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~~y~d~~~l~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp 163 (554)
T 1w96_A 84 AMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGP 163 (554)
T ss_dssp EEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSC
T ss_pred EEecccccccCChhhhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCC
Confidence 999988888899999999999999987778899999999999999999999999999999999999999999 999999
Q ss_pred CHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCC---ccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 163 PATSMAALGDKIGSSLIAQAANVPTLPWSGSH---VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 163 s~eam~~lgDK~~sr~laq~aGVPtpp~s~~~---~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
++++++.++||..++++++++|||+|+|...+ ++.+....+..+|.+.|.+.++.+.+++.++++++|||+||||..
T Consensus 164 ~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~ 243 (554)
T 1w96_A 164 PGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASE 243 (554)
T ss_dssp CHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETT
T ss_pred CHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999999999999999999987520 001111223346777777777899999999999999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCC
Q 000086 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2304)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~ 319 (2304)
|+||+|+++|++.+|+..+++.+..+..+.+++||+|+++++|++|++++|++|+++++++++|++|++|+|.++.+|++
T Consensus 244 g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k~~~~~P~~ 323 (554)
T 1w96_A 244 GGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVT 323 (554)
T ss_dssp CCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCC
T ss_pred CCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccceeeeCCCc
Confidence 99999999999999999999999887777899999999988999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 320 ~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
.++++..++|.+.+.++++++||+|++++||++++.+|++||||+|||+|++|+++++++|+|++++++++++|.+++.+
T Consensus 324 ~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~~~~~~G~dl~~~~~~~a~G~~l~~~ 403 (554)
T 1w96_A 324 IAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRI 403 (554)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceehhhhhcCCCHHHHHHHHHcCCCcccc
Confidence 88999999999999999999999999999999974478899999999999999999999999999999999999999888
Q ss_pred hhhhhcccccCCCcccccccccccccCCCc------cccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcE
Q 000086 400 PEIRRFYGMEHGGVYDAWRKTSVIATPFDF------DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473 (2304)
Q Consensus 400 pdir~~yg~~~~~~~~~~~~~~~~~i~f~~------~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V 473 (2304)
|+++.+||.+|.+ ...|+|.+ ..+..+.+.||++++|+++|+|.++|.|++|+|..+.++..++|
T Consensus 404 ~~~~~~~g~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~~~~~~~~~~v 474 (554)
T 1w96_A 404 SDIRTLYGMNPHS---------ASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNV 474 (554)
T ss_dssp HHHHHHTTCCTTC---------CCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSE
T ss_pred cchhhhccCCccc---------cccccccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEeEEecCCCCCE
Confidence 8899999998876 66677730 01224567899999999999999999999999999988888899
Q ss_pred EEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 474 ~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
|+++++..|+.|+++||+++|+|+++|+|+++|+++|.++|++++|+|.++||++||++||++|+|++|+++|+|||++|
T Consensus 475 ~~~~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~g~~~~~i~~~~~~~~~~~f~~~~~~t~~~~~~~ 554 (554)
T 1w96_A 475 WGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 554 (554)
T ss_dssp EEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTCC----CCHHHHHHHTSHHHHTTCCCTTHHHHHC
T ss_pred EEeeecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEEeeccCCHHHHHHHhcCHhhhcCCccchHhhhhC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999864
No 18
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=100.00 E-value=2.3e-70 Score=695.52 Aligned_cols=437 Identities=32% Similarity=0.553 Sum_probs=410.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|++++++++++|++++ +++ ++.+.++++.++||+++.+++.+..++|.|.+.|+++
T Consensus 5 ~~~kiLI~g~g~~a~~i~~aa~~~G~~~v---------~v~--~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~ 73 (446)
T 3ouz_A 5 EIKSILIANRGEIALRALRTIKEMGKKAI---------CVY--SEADKDALYLKYADASICIGKARSSESYLNIPAIIAA 73 (446)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHTTCEEE---------EEE--EGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCEEE---------EEE--cCcccccchHhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999884 344 4666889999999999999887888899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||||+.+|++.+++.|++.|+.++||++++++.++||..++++++++|||+|||..
T Consensus 74 ~~~~~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~-------------- 139 (446)
T 3ouz_A 74 AEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSD-------------- 139 (446)
T ss_dssp HHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCS--------------
T ss_pred HHHhCcCEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+.. ..+++||+|+++++|
T Consensus 140 -------~~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e 212 (446)
T 3ouz_A 140 -------GALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRH 212 (446)
T ss_dssp -------SSCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEE
T ss_pred -------cCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcE
Confidence 016889999999999999999999999999999999999999999998876532 568999999999899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++|++++|++|++++++.++|+++++|+|.++.+|++.++++..++|.+.+.++++++||+|++++||++++ +|++||+
T Consensus 213 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~~i 291 (446)
T 3ouz_A 213 IEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDK-NLDFYFI 291 (446)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEE
T ss_pred EEEEEEEcCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999994 5789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||+|++|+++++++|+|++++++++++|.|++. +..+.+.||++
T Consensus 292 EiNpR~~g~~~~~~~~~G~dl~~~~~~~~~G~~l~~---------------------------------~~~~~~~g~ai 338 (446)
T 3ouz_A 292 EMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPS---------------------------------QESIKLNGHSI 338 (446)
T ss_dssp EEESSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCC---------------------------------GGGCCCCSEEE
T ss_pred EeECCCCCcceeeeeeeCCCHHHHHHHHHCCCCCCc---------------------------------CCCCCcceEEE
Confidence 999999999999999999999999999999998851 12345679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++||| ..|.|++|+|+.+.+|..++|+++..+.+|..|+++|||++|+||++|+||++|+++|.+||+++.|+|
T Consensus 339 ~~ri~ae~~-~~~~p~~G~i~~~~~p~~~~vr~~~~~~~G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g- 416 (446)
T 3ouz_A 339 ECRITAEDS-KTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISG- 416 (446)
T ss_dssp EEEEESBCT-TTCCBCCEECSEEECCCSTTEEEEECCCTTCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCEEES-
T ss_pred EEEeeccCC-CccCCCCcEEeEEecCCCCCEEEEcccccCCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCEEeC-
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2304)
++||++||+++|++|+|++|+++|+|||+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
T 3ouz_A 417 IKTTKDFHLSMMENPDFINNNYDTNYLAR 445 (446)
T ss_dssp SCCTHHHHHHHHTCHHHHTTCCCTTHHHH
T ss_pred ccCCHHHHHHHhCChhhccCCcccccccc
Confidence 99999999999999999999999999996
No 19
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=100.00 E-value=2.6e-67 Score=724.17 Aligned_cols=442 Identities=32% Similarity=0.539 Sum_probs=353.5
Q ss_pred CCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHH
Q 000086 43 GGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQL 122 (2304)
Q Consensus 43 ~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~ 122 (2304)
.+++||+||||+|+|++|++++++||++|++++ +++++.+.++.+.++||+++.+++.+..++|.|.+.
T Consensus 26 ~~~~m~kkILI~grGeia~~iiraar~lGi~vV-----------aV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~ 94 (1236)
T 3va7_A 26 QKKKPFETVLIANRGEIAVRIMKTLKRMGIKSV-----------AVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDK 94 (1236)
T ss_dssp --CCSCSEEEECCCHHHHHHHHHHHHHHTCEEE-----------EEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHH
T ss_pred CccCCCCEEEEEcCCHHHHHHHHHHHHCCCEEE-----------EEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHH
Confidence 357899999999999999999999999999885 445577789999999999999988788889999999
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCc
Q 000086 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESC 202 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~ 202 (2304)
|+++|+++++|+|+||||+++|+..+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 95 Il~~a~~~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~---------- 164 (1236)
T 3va7_A 95 IINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSG---------- 164 (1236)
T ss_dssp HHHHHHHTTCSEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC-------------
T ss_pred HHHHHHHhCCCEEEECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeE----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred ccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecc
Q 000086 203 LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVAS 278 (2304)
Q Consensus 203 ~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~ 278 (2304)
.+.+.+++.++++++||||||||..|+||+||++|+|.+|+.++++.+..+. .+.+++||||++
T Consensus 165 ------------~v~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~ 232 (1236)
T 3va7_A 165 ------------LIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN 232 (1236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------ecCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC
Confidence 1678889999999999999999999999999999999999999999876543 346899999999
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
+++|++|++++|++|++++++.+||++|++|+|+++++|++.+++++.++|.+.+.++++++||+|+++|||++++++++
T Consensus 233 G~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~ 312 (1236)
T 3va7_A 233 NARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDE 312 (1236)
T ss_dssp CCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred CCeEEEEEEEecCCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCc
Confidence 98999999999999999999999999999999999999998899999999999999999999999999999999965589
Q ss_pred EEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000086 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2304)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2304)
+||||||||+|++|+++|+++|+|++++++++++|.+++. .+....++
T Consensus 313 ~y~iEINpRl~g~~~~te~vtGvDlv~~~l~~a~G~~l~~--------------------------------~~~~~~~~ 360 (1236)
T 3va7_A 313 FYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSPDF--------------------------------DNTKIEVS 360 (1236)
T ss_dssp EEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCG--------------------------------GGCCCCCC
T ss_pred EEEEEEECCCCCccHHHHHHHCCCHHHHHHHHHCCCCCCC--------------------------------cccccccc
Confidence 9999999999999999999999999999999999998752 12234567
Q ss_pred eEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000086 439 GHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2304)
Q Consensus 439 ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2304)
||+|++|+|+|||.++|.|++|+|..+.++.+ ++++..+.+|+.|+++|||++|+||++|+||++|+++|++||+++.
T Consensus 361 g~Ai~~riyaedp~~~f~p~~G~i~~~~~p~g--vrvd~~v~~G~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~ 438 (1236)
T 3va7_A 361 GASIEARLYAENPVKDFRPSPGQLTSVSFPSW--ARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETA 438 (1236)
T ss_dssp SEEEEEEEESEETTTTTEECCEECCEEECCTT--SEEEECCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCE
T ss_pred ceEEEEEEecCCcccccCCCCceEEEEEcCCc--cEecccccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEE
Confidence 99999999999999999999999999988764 8888889999999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
|+| ++||++||+++|++|+|++|+++|+|||++
T Consensus 439 i~G-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 471 (1236)
T 3va7_A 439 VYG-CITNIDYLRSIASSKMFKEAKVATKVLDSF 471 (1236)
T ss_dssp EES-SCCSHHHHHHHHHCHHHHHTCCCTTGGGGC
T ss_pred EeC-cccCHHHHHHHhCCHHHhCCCCcchhhhhc
Confidence 999 999999999999999999999999999986
No 20
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=100.00 E-value=3.6e-65 Score=704.09 Aligned_cols=451 Identities=33% Similarity=0.555 Sum_probs=352.2
Q ss_pred hcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-------CC
Q 000086 41 SLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-------TN 113 (2304)
Q Consensus 41 ~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-------~~ 113 (2304)
++|| ||+||||||||++|++++|+|+++|++++ ++ +++.+..+.+.++||+++.+|.. ..
T Consensus 9 ~~~~--~~~~~lianrGeia~riiraa~elGi~vv---------av--~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~ 75 (1165)
T 2qf7_A 9 HHGG--PISKILVANRSEIAIRVFRAANELGIKTV---------AI--WAEEDKLALHRFKADESYQVGRGPHLARDLGP 75 (1165)
T ss_dssp ---C--CCCEEEECCCHHHHHHHHHHHHHTTCEEE---------EE--ECGGGTTCHHHHSSSSEEECSCSTTSSSCCCT
T ss_pred ccCC--cceEEEEcCCcHHHHHHHHHHHHcCCEEE---------EE--ECCCcccchhHHhCCEEEEcCCcccccccCCc
Confidence 3444 68999999999999999999999999884 44 44666778999999999999874 45
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCC
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~ 193 (2304)
..+|+|++.|+++|+++++|+|+||||+++|++.+++.|++.|++|+||++++++.++||..++++++++|||+|||..
T Consensus 76 ~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~- 154 (1165)
T 2qf7_A 76 IESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATE- 154 (1165)
T ss_dssp THHHHCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC-----
T ss_pred cccccCHHHHHHHHHHhCCCEEEECCCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeC-
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCC
Q 000086 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGS 269 (2304)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~ 269 (2304)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+..++ .+.
T Consensus 155 --------------------~~v~s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~ 214 (1165)
T 2qf7_A 155 --------------------PLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKD 214 (1165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------cCCCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCC
Confidence 01567888888999999999999999999999999999999999999876553 246
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEE
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVE 349 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVE 349 (2304)
+++||+|+++++|++|++++|++|+++++++|+|++||+|+|.++.+|++.++++..++|.+.+.++++++||+|++++|
T Consensus 215 ~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vE 294 (1165)
T 2qf7_A 215 EVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVE 294 (1165)
T ss_dssp -----CCCSSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEeccCCcEEEEEEEEcCCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEE
Confidence 89999999988999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCc
Q 000086 350 YLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429 (2304)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~ 429 (2304)
|++++++|++||||+|||+|++|+++++++|+|++++++++++|.+++.++ +.+
T Consensus 295 f~vd~~dg~~~~iEiNpR~~~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~------------------------~g~-- 348 (1165)
T 2qf7_A 295 YLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQ------------------------SGV-- 348 (1165)
T ss_dssp EEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSGG------------------------GTC--
T ss_pred EEEECCCCCEEEEEEEcCCCCCchhhhhhhCCCHHHHHHHHHcCCCccccc------------------------ccc--
Confidence 999954788999999999999999999999999999999999999886310 001
Q ss_pred cccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEee-eeCCcccccCCCccEEEEEEeCCHHHHHH
Q 000086 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV-KSGGGIHEFSDSQFGHVFAFGESRALAIA 508 (2304)
Q Consensus 430 ~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v-~~G~~i~~~~Ds~~g~via~G~~reeA~~ 508 (2304)
..+.....+||+++|||++|||..+|.|++|+|..+..+..++++++.++ .+|..|+++|||++|+|+++|+|+++|++
T Consensus 349 p~q~~~~~~g~Ai~~ri~ae~P~~~f~p~~G~I~~~~~~~~~gvrvd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~ 428 (1165)
T 2qf7_A 349 PNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAIS 428 (1165)
T ss_dssp CCGGGCCCCSEEEEEEEESEETTTTTEECCEECCEEECCCCTTEEEECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHH
T ss_pred ccccccccCcEEEEEEEEecCCccCcCCCCcEEEEEecCCCCceEeeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHH
Confidence 01223456799999999999999999999999998888877899988766 57999999999999999999999999999
Q ss_pred HHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 509 NMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 509 ~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
+|.++|++++|+| ++|||+||+++|+||+|++|+++|+|||++
T Consensus 429 ~~~~al~~i~i~G-~~tni~~~~~~~~~~~f~~~~~~t~~~~~~ 471 (1165)
T 2qf7_A 429 RMDRALREFRIRG-VATNLTFLEAIIGHPKFRDNSYTTRFIDTT 471 (1165)
T ss_dssp HHHHHHHHCEEES-SCCSHHHHHHHHTSHHHHTTCCCTTTTTTC
T ss_pred HHHHHhhcEEEec-ccCCHHHHHHHhcCHHhhcCCccchhhhcC
Confidence 9999999999999 999999999999999999999999999986
No 21
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=100.00 E-value=9e-62 Score=617.25 Aligned_cols=442 Identities=33% Similarity=0.525 Sum_probs=402.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||||+|+|+.|++++++++++|++++ ++.. +.+.++++.++||+++.+|+.....+|.|.+.|+++|
T Consensus 1 ~k~ilI~g~g~~~~~i~~a~~~~G~~vv---------~v~~--~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~ 69 (451)
T 2vpq_A 1 MKKVLIANRGEIAVRIIRACRDLGIQTV---------AIYS--EGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIA 69 (451)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHTTCEEE---------EEEE--GGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHH
T ss_pred CceEEEeCCCHHHHHHHHHHHHcCCEEE---------EEec--ccccccchhhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 5899999999999999999999999884 3333 5556788999999999987766678999999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
++.++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~--------------- 134 (451)
T 2vpq_A 70 TSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSD--------------- 134 (451)
T ss_dssp HHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCS---------------
T ss_pred HHcCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcc---------------
Confidence 99999999999999999988889999999999999999999999999999999999999999761
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~rei 283 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+. ...+++||+|+++++|+
T Consensus 135 ------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~ 208 (451)
T 2vpq_A 135 ------GLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHI 208 (451)
T ss_dssp ------SCBSCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEE
T ss_pred ------cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEE
Confidence 01678999999999999999999999999999999999999999998876431 24689999999988899
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
+|++++|++|+++.+..++|+++++|++..+.+|++.++++..++|.+.+.++++++||.|++++||++++++|++||+|
T Consensus 209 ~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viE 288 (451)
T 2vpq_A 209 EIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFME 288 (451)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEE
Confidence 99999999899999999999999999999999999888999999999999999999999999999999984478899999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~ 443 (2304)
+|||+|+++++++.++|+|++++++++++|.+++.. +......+|++.
T Consensus 289 iN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~~~~~--------------------------------~~~~~~~~~a~~ 336 (451)
T 2vpq_A 289 MNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLPYK--------------------------------QEDIKLTGHAIE 336 (451)
T ss_dssp EECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCSCC--------------------------------GGGCCCCSEEEE
T ss_pred eeCCCCCceehhhHHhCCCHHHHHHHHHCCCCCCCc--------------------------------ccccCcCceEee
Confidence 999999999999999999999999999999987521 112334589999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEeccc
Q 000086 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523 (2304)
Q Consensus 444 ~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v 523 (2304)
+|+++++|..+|.|.+|.+..+.++..++|+++..+.+|..+++++++++|+|+++|+|+++|++++.++++++.|+| +
T Consensus 337 ~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g-~ 415 (451)
T 2vpq_A 337 FRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLG-I 415 (451)
T ss_dssp EEEESEEGGGTTEECCSBCSEEECCCSTTEEEECCCCTTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHTCEEES-S
T ss_pred eEeeeeccccccCCCCCEEeEEECCCCCCcccccccccCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhccEEeC-c
Confidence 999999999899999999998888777899888888999999889999999999999999999999999999999999 8
Q ss_pred ccCHHHHHHhcCccccccccccchhhhhhhh
Q 000086 524 RTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2304)
Q Consensus 524 ~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2304)
.||++||+++|.+|+|++|+++|+|||+++.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (451)
T 2vpq_A 416 DTTIPFHIKLLNNDIFRSGKFNTNFLEQNSI 446 (451)
T ss_dssp CCSHHHHHHHHTCHHHHHTCCCTTTTTTSCT
T ss_pred CCCHHHHHHHhCCHhhhcCCCccHHHhhhhh
Confidence 9999999999999999999999999998754
No 22
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=100.00 E-value=1.9e-61 Score=616.18 Aligned_cols=446 Identities=32% Similarity=0.532 Sum_probs=401.3
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIV 124 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~Ii 124 (2304)
+||+||||+|+|+.+++++++++++|++++ ++.. +.+..+++.++||+++.+|.. ....+|.|.+.|+
T Consensus 4 ~~~k~ILI~g~g~~~~~i~~a~~~~G~~vv---------~v~~--~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~ 72 (461)
T 2dzd_A 4 RRIRKVLVANRGEIAIRVFRACTELGIRTV---------AIYS--KEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGII 72 (461)
T ss_dssp CCCSEEEECSCHHHHHHHHHHHHHHTCEEE---------EEEC--GGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHH
T ss_pred CcCcEEEEECCcHHHHHHHHHHHHcCCEEE---------EEEC--CcccccchhhhCCEEEEcCCCCCccccccCHHHHH
Confidence 578999999999999999999999999884 3333 555667889999999999863 3345789999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
++|+++++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 73 ~~~~~~~id~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~------------ 140 (461)
T 2dzd_A 73 EIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSD------------ 140 (461)
T ss_dssp HHHHHTTCCEEECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCS------------
T ss_pred HHHHHhCCCEEEECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcc------------
Confidence 99999999999999999999988899999999999999999999999999999999999999999862
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~ 280 (2304)
..+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+ ....+++||+|++|+
T Consensus 141 ---------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 211 (461)
T 2dzd_A 141 ---------GPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP 211 (461)
T ss_dssp ---------SCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSC
T ss_pred ---------cCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 0167899999999999999999999999999999999999999999887643 224689999999988
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|++|++++|.+|+++.+++++|+.+++|++.++.+|++.++++..++|.+.+.++++++||.|.+++||+++ ++++|
T Consensus 212 ~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~--~~~~~ 289 (461)
T 2dzd_A 212 KHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVS--GDEFY 289 (461)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE--TTEEE
T ss_pred eEEEEEEEEcCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEe--CCCEE
Confidence 9999999999999999999999999999999999999977999999999999999999999999999999999 48899
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gh 440 (2304)
|||+|||+|++|+++++++|+|++++++++++|.+++.++ +.|. .+.....+||
T Consensus 290 viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~------------------------~~~~--~~~~~~~~g~ 343 (461)
T 2dzd_A 290 FIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHE------------------------VGIP--KQEDIRINGY 343 (461)
T ss_dssp EEEEESSCCGGGHHHHHHHCCCHHHHHHHHHTTCCTTSTT------------------------TCCC--CGGGCCCCSE
T ss_pred EEEEECCCCCceeeEEeecCCCHHHHHHHHHcCCCccccc------------------------cccc--ccccccccee
Confidence 9999999999999999999999999999999999986421 1111 1222456799
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 441 ai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
++++|+++++|..+|.|++|.|+.+..+..++++.+.. +.+|++|+++||+++|+|+++|+|+++|++++++++++++|
T Consensus 344 ~~~~ri~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~ 423 (461)
T 2dzd_A 344 AIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRI 423 (461)
T ss_dssp EEEEEEESEEGGGTTEECCEECSEEECCCCTTEEEEESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE
T ss_pred EEEeeecccCCccCccCCCCeeeEEecCCCCCeEeecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcEE
Confidence 99999999999999999999998888877788987654 47999999999999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
+| ++|||.|+.+++.+|+|++|+++|+|||++
T Consensus 424 ~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
T 2dzd_A 424 RG-IKTNIPFLENVVQHPKFLSGEYDTSFIDTT 455 (461)
T ss_dssp ES-SCCSHHHHHHHHHSHHHHTSCCCTTHHHHC
T ss_pred eC-CcCCHHHHHHHhCChhhhCCCccchhhhcc
Confidence 99 799999999999999999999999999986
No 23
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=2.1e-61 Score=613.96 Aligned_cols=438 Identities=29% Similarity=0.509 Sum_probs=401.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|+|+.+++++++++++|++++ ++.++.+.++++.++||+++.+++. ...+|.|.+.|+++
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~~~p~-~~~~~~d~~~l~~~ 68 (451)
T 1ulz_A 1 MVNKVLVANRGEIAVRIIRACKELGIPTV-----------AIYNEVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINL 68 (451)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCEE-----------EEECGGGTTCHHHHHSSEEEECCSS-TTHHHHCHHHHHHH
T ss_pred CCceEEEECCcHHHHHHHHHHHHcCCeEE-----------EEechhhcccchhhhCcEEEEcCCC-cccccCCHHHHHHH
Confidence 68999999999999999999999999985 3334556778899999999998654 56689999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCC--CCCccCCCCCccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWS--GSHVKIPPESCLV 204 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s--~~~~~~~~~~~~~ 204 (2304)
|++.++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|+|. .
T Consensus 69 ~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~------------ 136 (451)
T 1ulz_A 69 ALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGV------------ 136 (451)
T ss_dssp HHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSS------------
T ss_pred HHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccc------------
Confidence 99999999999999999998888999999999999999999999999999999999999999986 3
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~ 280 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+ ....+++||+|++|+
T Consensus 137 -----------~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 1ulz_A 137 -----------LKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP 205 (451)
T ss_dssp -----------CCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC
T ss_pred -----------cCCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC
Confidence 67889999999999999999999999999999999999999999887643 124689999999988
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|++|++++|.+|+++.+..|+|+++++|++.++.+|++.++++..+++.+.+.++++++||+|++++||++++ +|++|
T Consensus 206 ~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~ 284 (451)
T 1ulz_A 206 KHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLY 284 (451)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEE
T ss_pred eEEEEEEEEcCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCCEE
Confidence 99999999998899999999999999999999999999878999999999999999999999999999999984 67899
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gh 440 (2304)
|+|+|||+|+++++++.++|+|++++++++++|.|++.. +..+...+|
T Consensus 285 viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~--------------------------------~~~~~~~~~ 332 (451)
T 1ulz_A 285 FIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLTIK--------------------------------QEDVKFNGY 332 (451)
T ss_dssp EEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCCC--------------------------------GGGCCCCSE
T ss_pred EEEeeCCCCccchHHHHHhCCCHHHHHHHHHcCCCCCCc--------------------------------cccCCCceE
Confidence 999999999999999999999999999999999988521 112234579
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 441 ai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
++++++++++|..+|.|.+|++..+.++..++++++..+.+|..+++++|+++|||+++|+|+++|++++.++++++.|+
T Consensus 333 a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~ 412 (451)
T 1ulz_A 333 AIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEIT 412 (451)
T ss_dssp EEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEC
T ss_pred EEEEeccccCcccCcCCCCceeceEECCCCCCcccccCccCCCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEEe
Confidence 99999999999889999999999988877788988888899999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 521 G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
| ++|||.||+++|.+|+|++|+++|+|||+++
T Consensus 413 g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (451)
T 1ulz_A 413 G-VKTTIPLLINIMKEKDFKAGKFTTKYLEEHP 444 (451)
T ss_dssp S-SCCSHHHHHHHHHCHHHHHTCCCTTTTTTCG
T ss_pred C-ccCCHHHHHHHhCCHHHhcCCCcchhhhhhH
Confidence 9 9999999999999999999999999999874
No 24
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=100.00 E-value=4.7e-61 Score=610.35 Aligned_cols=439 Identities=33% Similarity=0.579 Sum_probs=400.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|+.+++++++++++|++++ ++.+ +.+.++++.++||+++.+|+.....+|.|.+.|+++
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv---------~v~~--~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~ 69 (449)
T 2w70_A 1 MLDKIVIANRGEIALRILRACKELGIKTV---------AVHS--SADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISA 69 (449)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEE---------EEEE--GGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHH
T ss_pred CCceEEEeCCcHHHHHHHHHHHHcCCeEE---------EEec--cccccCchhhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999884 3333 555778899999999998655666799999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCC--CCCccCCCCCccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWS--GSHVKIPPESCLV 204 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s--~~~~~~~~~~~~~ 204 (2304)
|+++++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|||. .
T Consensus 70 ~~~~~~d~v~~~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~------------ 137 (449)
T 2w70_A 70 AEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGP------------ 137 (449)
T ss_dssp HHHHTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSC------------
T ss_pred HHHcCCCEEEECCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccc------------
Confidence 99999999999999999998888999999999999999999999999999999999999999986 3
Q ss_pred ccCcccccccccCCHHHH-HHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccc
Q 000086 205 TIPDDVYRQACVYTTEEA-IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQ 279 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea-~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g 279 (2304)
+.+.+++ .++++++|||+||||..|+||+|+++|+|.+|+.++++.+..+. .+.+++||+|++|
T Consensus 138 -----------~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g 206 (449)
T 2w70_A 138 -----------LGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 206 (449)
T ss_dssp -----------CCSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS
T ss_pred -----------cCCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC
Confidence 5677888 88889999999999999999999999999999999998876431 2468999999998
Q ss_pred cceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcE
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~ 359 (2304)
++|++|+++++.+|+++.++.|+|+++++|++..+.+|++.++++..+++.+.+.++++++||.|++++||+++ ++++
T Consensus 207 ~~e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~--~~~~ 284 (449)
T 2w70_A 207 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEF 284 (449)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEE
T ss_pred CeEEEEEEEEcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE--CCCE
Confidence 89999999999889999999999999999999999999987899999999999999999999999999999999 4889
Q ss_pred EEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000086 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2304)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~g 439 (2304)
||+|+|||+|+++++++.++|+|++++++++++|.|++. .+......|
T Consensus 285 ~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~--------------------------------~~~~~~~~~ 332 (449)
T 2w70_A 285 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSI--------------------------------KQEEVHVRG 332 (449)
T ss_dssp EEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHHTCCCSS--------------------------------CGGGCCCCS
T ss_pred EEEEEECCCCccchHHHHHhCCCHHHHHHHHHCCCCCCC--------------------------------chhccccce
Confidence 999999999999999999999999999999999998752 011233458
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 440 hai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
|++++++++++| .+|.|.+|.+..+.++..++++++..+.+|..+++++++++|||+++|+|+++|++++.++++++++
T Consensus 333 ~~~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~ 411 (449)
T 2w70_A 333 HAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELII 411 (449)
T ss_dssp EEEEEEEECBCT-TTCCBCCEECCEEECCCSTTEEEECCCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEE
T ss_pred eEEEEeecccCc-cccCCCCCEeceEECCCCCcEEEEeccccCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEE
Confidence 999999999999 8999999999988888778998888888999998899999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCccccccccccchhhhhhhhh
Q 000086 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2304)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2304)
+| ++|||.||+++|++|+|++|+++|+|||+++++
T Consensus 412 ~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
T 2w70_A 412 DG-IKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGL 446 (449)
T ss_dssp ES-SCCSHHHHHHHHTCHHHHHCCCCTTHHHHHHTC
T ss_pred eC-cCCCHHHHHHHHcChhhccCCceehhhhhhhhc
Confidence 99 999999999999999999999999999998654
No 25
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=100.00 E-value=4.3e-45 Score=457.16 Aligned_cols=386 Identities=15% Similarity=0.148 Sum_probs=317.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
.++||||+|+|+.+++++++++++|++++ ++ . ..+.++++.++||+++.+| |.|.+.|+++
T Consensus 6 ~~~~ilI~g~g~~~~~~~~a~~~~G~~~v---------~v-~--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~ 66 (403)
T 4dim_A 6 DNKRLLILGAGRGQLGLYKAAKELGIHTI---------AG-T--MPNAHKPCLNLADEISYMD-------ISNPDEVEQK 66 (403)
T ss_dssp CCCEEEEECCCGGGHHHHHHHHHHTCEEE---------EE-E--CSSCCHHHHHHCSEEEECC-------TTCHHHHHHH
T ss_pred CCCEEEEECCcHhHHHHHHHHHHCCCEEE---------EE-c--CCCCCCcchhhCCeEEEec-------CCCHHHHHHH
Confidence 46899999999999999999999999985 22 2 2335778999999999884 5679999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+|+ |+.++...+++.+++.|+ +||++++++.++||..++++++++|||+|+|..
T Consensus 67 ~~~~~~d~v~~~-~~~~~~~~~a~~~~~~gl--~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-------------- 129 (403)
T 4dim_A 67 VKDLNLDGAATC-CLDTGIVSLARICDKENL--VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFV-------------- 129 (403)
T ss_dssp TTTSCCSEEECC-SCSTTHHHHHHHHHHHTC--SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEEC--------------
T ss_pred HHHcCCCEEEeC-CcchhHHHHHHHHHHcCc--CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE--------------
Confidence 999999999997 777776678888888996 699999999999999999999999999999876
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.....+.++++|+|++| .|+++.
T Consensus 130 ---------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv~ 199 (403)
T 4dim_A 130 ---------VRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGAQ 199 (403)
T ss_dssp ---------CCSHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEEE
T ss_pred ---------eCCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEEE
Confidence 7889999999999999999999999999999999999999999999988777789999999987 799999
Q ss_pred EEEcCCCCEEEeeccccccccccc--eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCcee-eeEEEEEEEccCCcEEEEE
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQ--KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVG-AATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~q--KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~G-a~tVEfl~d~~~g~~yfLE 363 (2304)
++.. +|++..+..........+. ......|+. ++++..++|.+.+.++++++||.| ++++||+++ ++++||+|
T Consensus 200 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~--~~~~~~iE 275 (403)
T 4dim_A 200 AFVY-KNDVLFVMPHGDETYMSHTAVPVGHYVPLD-VKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYIIE 275 (403)
T ss_dssp EEEE-TTEEEEEEEEEEEEEESSSEEEEEEEESCC-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE--TTEEEEEE
T ss_pred EEEE-CCEEEEEEEecceeccCCCCcceeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE--CCcEEEEE
Confidence 9875 3666554321110000000 011233666 889999999999999999999996 999999998 78999999
Q ss_pred eccCCCCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000086 364 LNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2304)
Q Consensus 364 INpRlqgeh--pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gha 441 (2304)
+|||+++++ .+++.++|+|++++++++++|.|++.++ +......+|
T Consensus 276 iN~R~~~~~~~~~~~~~~G~d~~~~~~~~~~G~~~~~~~-------------------------------~~~~~~~~~- 323 (403)
T 4dim_A 276 LTGRVGANCLPELVEINYGIEYYKMIASMAISENPLVFW-------------------------------SQKSKENKA- 323 (403)
T ss_dssp EESSCCSTTHHHHHHHHHTSCHHHHHHHHHTTCCTHHHH-------------------------------TTCCSSCCE-
T ss_pred EcCCCCCCcHHHHHHHHhCcCHHHHHHHHHcCCCccccc-------------------------------ccccccccc-
Confidence 999999986 4788999999999999999999873211 111122344
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCc--E-EEEEeeeeCCcccccCCC--ccEEEEEEeCCHHHHHHHHHHhhcc
Q 000086 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPN--V-WAYFSVKSGGGIHEFSDS--QFGHVFAFGESRALAIANMVLGLKE 516 (2304)
Q Consensus 442 i~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~--V-~~~~~v~~G~~i~~~~Ds--~~g~via~G~~reeA~~~l~~AL~e 516 (2304)
+.+|++. |.|.+|+|..+.++..++ + .++..+.+|..+++++|| ++|+|+++|+|+++|++++.+++++
T Consensus 324 ~~~~~~~------~~~~~G~i~~~~~~~~~~~~v~~~~~~~~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~~~~~~~~~ 397 (403)
T 4dim_A 324 GLARMII------ETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIINN 397 (403)
T ss_dssp EEEEEEC------CSSCCEEEEEEEECCCCCTTEEEEEECCCTTCEECCSCSGGGCCEEEEEEESSHHHHHHHHHHHHTT
T ss_pred ceEEEEE------ecCCCeEEEeeecccccCCCeEEEEEEcCCCCEeCCCCCCCceeEEEEEEeCCHHHHHHHHHHHhcc
Confidence 5678865 568899999888765443 3 346788999999999999 8999999999999999999999999
Q ss_pred eEEe
Q 000086 517 IQIR 520 (2304)
Q Consensus 517 l~I~ 520 (2304)
++|+
T Consensus 398 ~~i~ 401 (403)
T 4dim_A 398 INII 401 (403)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 26
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=100.00 E-value=8e-42 Score=422.32 Aligned_cols=356 Identities=15% Similarity=0.103 Sum_probs=278.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
||||||+|+|..+..+++++|++||+|+ ++ |.++++++.++||+++.++. +.|.+.++.++
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv-----------~v--d~~~~~~~~~~aD~~~~~~~------~~d~~~~~~~~ 61 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVV-----------LV--DKNPQALIRNYADEFYCFDV------IKEPEKLLELS 61 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESCTTCTTTTTSSEEEECCT------TTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCChhHhhCCEEEECCC------CcCHHHHHHHh
Confidence 7999999999999999999999999985 44 55678888999999999864 34567777666
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+ ++|+|+|++|+.+++..+...+++.++ ++||++++++.++||..+|++++++|||+|+|..
T Consensus 62 ~--~~D~v~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~--------------- 123 (363)
T 4ffl_A 62 K--RVDAVLPVNENLACIEFLNSIKEKFSC-PVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRP--------------- 123 (363)
T ss_dssp T--SSSEEEECCCCHHHHHHHHHHGGGCSS-CBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSC---------------
T ss_pred c--CCCEEEECCCChhHHHHHHHHHHHCCC-ccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCcee---------------
Confidence 4 689999999987765444454555555 5799999999999999999999999999998643
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+|||+||||+.|+||+|+++|+|.+++.. ....+++|+|++| +|++|++
T Consensus 124 ---------------------ig~P~vvKp~~g~g~~gv~~v~~~~~~~~---------~~~~~~~ee~i~g-~e~sv~~ 172 (363)
T 4ffl_A 124 ---------------------SKPPYFVKPPCESSSVGARIIYDDKDLEG---------LEPDTLVEEYVEG-EVVSLEV 172 (363)
T ss_dssp ---------------------SSSCEEEECSSCCTTTTCEEEC------C---------CCTTCEEEECCCS-EEEEEEE
T ss_pred ---------------------cCCCEEEEECCCCCCcCeEEeccHHHhhh---------hccchhhhhhccC-cEEEEEE
Confidence 58999999999999999999999988753 2457899999976 8999999
Q ss_pred EEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccC
Q 000086 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2304)
Q Consensus 288 l~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2304)
++|+.+.++....++|..++.+++.+..+|.. +++.+.+.++++++||+|++++||+++ ++++||+|+|||
T Consensus 173 ~~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~~a~~~~~~l~~~G~~~vef~~~--~~~~~viEiN~R 243 (363)
T 4ffl_A 173 VGDGSHFAVVKETLVHIDETYDCHMVTPLPAN-------PLFRQISHDLAANLPLKGIMDVEAIFG--PKGLRVIEIDAR 243 (363)
T ss_dssp EEESSCEEECCCEEEEECTTSCEEEEEECCCC-------HHHHHHHHHHHHTTTCEEEEEEEEEEE--TTEEEEEEEECS
T ss_pred EEECCeEEEEEEEEeccCCcccceeecchhHH-------HHHHHHHHHHHHhCCccceeeeeeEEe--CCeEEEEEEeCC
Confidence 99998888888888888888888877766543 568889999999999999999999999 578999999999
Q ss_pred CCCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 368 LQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 368 lqgehp-vtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
+++.++ ++++++|+|++++++++++|.+++.. .....+|++.+++
T Consensus 244 ~~g~~~~~~~~~~g~dl~~~~~~~~~g~~~~~~----------------------------------~~~~~~~~~~~~~ 289 (363)
T 4ffl_A 244 FPSQTPTVVYYSSGINLIELLFRAFTDGVEEIR----------------------------------AIPENKYCIYEHL 289 (363)
T ss_dssp CCSSHHHHHHHHHCCCHHHHHHHHTTTCCCCC--------------------------------------CCCEEEEEEE
T ss_pred CCCChHHHHHHHHCcCHHHHHHHHHCCCCCCcc----------------------------------ccCCCceEEEEEE
Confidence 999886 89999999999999999999987531 1122356666666
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeC-CcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSG-GGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G-~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
.+++. ..+.|..+.+. ...+++.. +....+ +.....+++++|+|+++|+||+||++++++||+.++.+
T Consensus 290 ~~~~~-~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~vi~~G~~~~eA~~k~~~al~~i~~~ 358 (363)
T 4ffl_A 290 MFGEN-GVLIPVGEQVL----SMGSDYGK-FYEEPGIEIFLCKGEYPVFTMVFWGKDREETGAKRCKGLSVLKER 358 (363)
T ss_dssp EECGG-GBEEECCHHHH----TTCSEEEE-EEEETTEEEEEEESSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCC-CccCCCCceEE----ecCCCeeE-EEecCCCCCEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 65442 23444443332 12223322 222222 12235688999999999999999999999999987654
No 27
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=7.9e-42 Score=473.19 Aligned_cols=396 Identities=19% Similarity=0.268 Sum_probs=326.3
Q ss_pred CCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 46 KPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 46 ~~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
+.++||||+|+|++ +.+++++++++||+++ .+.++.+....+.++||+.+..|
T Consensus 5 ~~~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~i~p----- 68 (1073)
T 1a9x_A 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-----------NVNSNPATIMTDPEMADATYIEP----- 68 (1073)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-----------EECSCTTCGGGCGGGSSEEECSC-----
T ss_pred CCCCEEEEECCCcccccccccccchHHHHHHHHHHcCCEEE-----------EEeCCcccccCChhhCcEEEECC-----
Confidence 46899999999985 6789999999999985 44444444456788999988544
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcC-CCCC--chH--HHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPGWGHA-SEIP--ELP--DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG~G~~-SEn~--~la--~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp 189 (2304)
.|.+.|.++++++++|+|+|++|+. .++. .+. ..|++.|+.++||++++++.+.||..++++++++|||+|+
T Consensus 69 ---~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~ 145 (1073)
T 1a9x_A 69 ---IHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETAR 145 (1073)
T ss_dssp ---CCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCS
T ss_pred ---CCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCC
Confidence 3689999999999999999998852 1111 122 2677889999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000086 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2304)
Q Consensus 190 ~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2304)
|.. +.+.+++.++++++||||||||+.|+||+|+++|+|++||.++++......+..
T Consensus 146 ~~~-----------------------v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~ 202 (1073)
T 1a9x_A 146 SGI-----------------------AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTK 202 (1073)
T ss_dssp EEE-----------------------ESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTS
T ss_pred EEE-----------------------ECCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCC
Confidence 875 788999999999999999999999999999999999999999999888777677
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc------cceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR------HQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr------~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~ 343 (2304)
+++||+|++|.+|+++++++|.+|+++.+ |++++. +++.+..+|+..++++..++|.+.+.++++++||+
T Consensus 203 ~vlvEe~I~G~~E~~v~v~~d~~g~~v~~----~~~e~~dp~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~ 278 (1073)
T 1a9x_A 203 ELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVE 278 (1073)
T ss_dssp CEEEEECCTTSEEEEEEEEECTTCCEEEE----EEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cEEEEEccCCCeEEEEEEEEeCCCCEEEE----EEEecccCCccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999998999999999999999887 666653 35567778998799999999999999999999999
Q ss_pred -eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 344 -GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 344 -Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
|.++|||++++++|++||+|||||++++++++++++|+|+++.++++++|.+++.++.
T Consensus 279 ~G~~~vdf~~~~~~g~~~viEiNpR~~~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~~--------------------- 337 (1073)
T 1a9x_A 279 TGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMN--------------------- 337 (1073)
T ss_dssp SEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBC---------------------
T ss_pred cCceEEEEEEECCCCCEEEEEecCCCCccHHHHHHHhCCCHHHHHHHHHcCCChHHhhc---------------------
Confidence 9999999999657899999999999999999999999999999999999999864311
Q ss_pred cccCCCccccCCCCCceEEEEEEEccC-CCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeC
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSE-DPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGE 501 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aE-dp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~ 501 (2304)
+++.+ +|. .|.|+.|.+. +.+|..+ .+.....+..+...++| +|||+++|+
T Consensus 338 ----------------------~i~~~~~~a-~f~p~~~~v~-~~ip~~~---~~~~~~~~~~~~~~~~~-~G~v~~~g~ 389 (1073)
T 1a9x_A 338 ----------------------DITGGRTPA-SFEPSIDYVV-TKIPRFN---FEKFAGANDRLTTQMKS-VGEVMAIGR 389 (1073)
T ss_dssp ----------------------TTTTTCSBS-CSCCBCSSEE-EEEEECC---GGGCTTSCCBCCSSCCC-CEEEEEEES
T ss_pred ----------------------cccCccCHH-HcccCCCcEE-EEccccc---ccccCCCCcccCCCccC-cEEEEEEcC
Confidence 12223 343 5677766552 1222111 01111234555666666 899999999
Q ss_pred CHHHHHHHHHHhhcceEEecccccC--------HHHHHHhcCccc
Q 000086 502 SRALAIANMVLGLKEIQIRGEIRTN--------VDYTIDLLHASD 538 (2304)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G~v~tn--------~~~l~~ll~~~~ 538 (2304)
|++||++++.++|+ +.+.| +.+| .+.|.+.|.+|.
T Consensus 390 ~~~ea~~ka~~~l~-~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~ 432 (1073)
T 1a9x_A 390 TQQESLQKALRGLE-VGATG-FDPKVSLDDPEALTKIRRELKDAG 432 (1073)
T ss_dssp SHHHHHHHHHHHSS-SSCSS-SCCSSCTTCTTHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHhhc-ccccC-cCccccccccccHHHHHHHHhCCC
Confidence 99999999999997 88999 6644 678888888887
No 28
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=100.00 E-value=7.8e-41 Score=422.05 Aligned_cols=395 Identities=15% Similarity=0.132 Sum_probs=306.2
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
+..|+|+|+|+|.....++++|+++|++++ ++. ++.+..+.+...+|+++.+|...+.+.+ .+.+.+
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv---------~v~--~~~~~~~~~~~~~d~~~~~~~~~d~~~~--~~~~~~ 69 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVT---------FFY--NSAEDFPGNLPAVERCVPLPLFEDEEAA--MDVVRQ 69 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEE---------EEE--ETTSCCCCSCTTEEEEEEECTTTCHHHH--HHHHHH
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEE---------EEE--CCCcccccCHhhccEEEecCCCCCHHHH--HHHHHH
Confidence 346899999999999999999999999984 333 3555667788899999998754333333 566777
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
++++.++|+|+++++...+ ..+..++..|+ +||++++++.++||..+|++++++|||+|+|..
T Consensus 70 ~~~~~~id~V~~~~e~~~~--~~a~l~e~lgl--pg~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 132 (425)
T 3vot_A 70 TFVEFPFDGVMTLFEPALP--FTAKAAEALNL--PGLPFTTMENCRNKNKTRSILQQNGLNTPVFHE------------- 132 (425)
T ss_dssp HHHHSCCSEEECCCGGGHH--HHHHHHHHTTC--SSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------------
T ss_pred hhhhcCCCEEEECCchhHH--HHHHHHHHcCC--CCCCHHHHHHhhCHHHHHHHHHHCCCCCCceec-------------
Confidence 8888999999988654332 13445566774 599999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC---------CCCcEEEEEe
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV---------PGSPIFIMKV 276 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~---------~~~~i~VEey 276 (2304)
+++.+++. +.++|||+||||..|+||+||++|+|.+|+.++++.+.... .+.++++|+|
T Consensus 133 ----------~~~~~~~~--~~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~ 200 (425)
T 3vot_A 133 ----------FHTLADLE--NRKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQF 200 (425)
T ss_dssp ----------ESSGGGGT--TCCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEEC
T ss_pred ----------cCcHHHHH--HhhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEE
Confidence 55555553 35799999999999999999999999999999999886433 2568999999
Q ss_pred ccccceeeEEEEEcCCCC--EEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce-eeeEEEEEEE
Q 000086 277 ASQSRHLEVQLLCDQYGN--VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYS 353 (2304)
Q Consensus 277 I~g~reieVqvl~D~~G~--vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~-Ga~tVEfl~d 353 (2304)
++| +|++|+++.++ |+ ++.+..+.++.+..+++.....|+. ++++..+++.+.+.++++++|+. |++++||+++
T Consensus 201 i~G-~e~sv~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~Pa~-l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~ 277 (425)
T 3vot_A 201 IDG-PEFAIETLSIQ-GNVHVLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLD 277 (425)
T ss_dssp CCS-CEEEEEEEEET-TEEEEEEEEEEECCCCSBCCCCEEEESCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred ecC-cEEEEEEEEeC-CcEEEEeEEEEeccCCCccccceEeeccc-CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEE
Confidence 987 79999998764 44 4455666677666666667778887 88999999999999999999995 9999999998
Q ss_pred ccCCcEEEEEeccCCCCC---cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCcc
Q 000086 354 METGEYYFLELNPRLQVE---HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFD 430 (2304)
Q Consensus 354 ~~~g~~yfLEINpRlqge---hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~ 430 (2304)
+ +|++||+|+|||++|. |.++++++|+|+++++++.++|.+.... +
T Consensus 278 ~-dG~~~~iEiN~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~~---------------------------~--- 326 (425)
T 3vot_A 278 K-DGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSE---------------------------F--- 326 (425)
T ss_dssp T-TCCEEEEEEESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGGG---------------------------S---
T ss_pred e-CCcEEEEEEecCCCCCCchHHHHHHHHCCCHHHHHHHHHCCCccccc---------------------------c---
Confidence 4 7789999999999775 5688999999999999999999754310 0
Q ss_pred ccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc----ccCCCcE-EEEEeeeeCCccccc--CCCccEEEEEEeCCH
Q 000086 431 QAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS----FKSKPNV-WAYFSVKSGGGIHEF--SDSQFGHVFAFGESR 503 (2304)
Q Consensus 431 ~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~----~~s~~~V-~~~~~v~~G~~i~~~--~Ds~~g~via~G~~r 503 (2304)
.....+..++....+.+ |.+|++..+. +...|+| ++...+.+|..+.++ +++++|||+++|+|+
T Consensus 327 -~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~ 397 (425)
T 3vot_A 327 -EGEIRPVRTAGNYIIPV--------QGSGTFEKIDGLEEVKQRQEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSY 397 (425)
T ss_dssp -CSCCCCSSEEEEEECCC--------CSCEEEEEEETHHHHHTCTTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSH
T ss_pred -ccccccceEEEEEEEcC--------CCCeEEEecCCHHHHhcCCCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCH
Confidence 01122334554444433 3467776653 3456787 577778899998765 567899999999999
Q ss_pred HHHHHHHHHhhcceEEecccccCH
Q 000086 504 ALAIANMVLGLKEIQIRGEIRTNV 527 (2304)
Q Consensus 504 eeA~~~l~~AL~el~I~G~v~tn~ 527 (2304)
++|+++++++++.++|.. ++|+
T Consensus 398 ~ea~~~~~~~~~~i~i~~--~~~i 419 (425)
T 3vot_A 398 EECEAFYRELDDELHIIY--QNNL 419 (425)
T ss_dssp HHHHHHHHHHHHHCEEEE--CC--
T ss_pred HHHHHHHHHHhCccEEEE--eCCC
Confidence 999999999999999976 5554
No 29
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=5.3e-40 Score=409.31 Aligned_cols=378 Identities=15% Similarity=0.158 Sum_probs=299.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+++||||+|+|..+..++++++++|++++ .+ |..+++++.+++|+.+.++ |.|.+.|+++
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~d~~~~~~-------~~d~~~l~~~ 69 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVI-----------AV--DRYADAPAMHVAHRSHVIN-------MLDGDALRRV 69 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEE-----------EE--ESSTTCGGGGGSSEEEECC-------TTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--ECCCCCchhhhccceEECC-------CCCHHHHHHH
Confidence 45799999999999999999999999874 33 3334567888999998874 5678999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
|+++++|+|+|++++...+ +++.|++.|+ ++||++++++.++||..+++++ +++|||+|+|..
T Consensus 70 ~~~~~~d~v~~~~e~~~~~--~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~------------- 133 (391)
T 1kjq_A 70 VELEKPHYIVPEIEAIATD--MLIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYRF------------- 133 (391)
T ss_dssp HHHHCCSEEEECSSCSCHH--HHHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEE-------------
T ss_pred HHHcCCCEEEECCCcCCHH--HHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeee-------------
Confidence 9999999999998876543 5677888998 6799999999999999999999 899999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEecccccee
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~i~VEeyI~g~rei 283 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|+++++|+
T Consensus 134 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~ 203 (391)
T 1kjq_A 134 ----------ADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEI 203 (391)
T ss_dssp ----------ESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEE
T ss_pred ----------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEE
Confidence 678899999999999999999999999999999999999999999886543 24689999999967899
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
+|.++.++.| .......+ .............|++ ++++..+++.+.+.++++++||+|++++||+++ ++++||+|
T Consensus 204 sv~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~--~~~~~viE 278 (391)
T 1kjq_A 204 TLLTVSAVDG-VHFCAPVG-HRQEDGDYRESWQPQQ-MSPLALERAQEIARKVVLALGGYGLFGVELFVC--GDEVIFSE 278 (391)
T ss_dssp EEEEEEETTE-EEECCCEE-EEEETTEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEE--TTEEEEEE
T ss_pred EEEEEEeCCC-eEEccCcc-eEEECCEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCcEEEEE
Confidence 9999998766 22211111 0000011111234776 889999999999999999999999999999999 34899999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~ 443 (2304)
+|||++++..++...+|+|++++++++++|.+++. +...+|++.
T Consensus 279 iN~R~~~~~~~~~~~~g~~~~~~~~~~~~G~~~~~------------------------------------~~~~~~~~~ 322 (391)
T 1kjq_A 279 VSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGG------------------------------------IRQYGPAAS 322 (391)
T ss_dssp EESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCC------------------------------------CCBCSSEEE
T ss_pred EECCCCCCcceeeeecCcCHHHHHHHHHcCCCCCC------------------------------------ccccCcEEE
Confidence 99999998766666679999999999999998752 112467888
Q ss_pred EEEccCCCCCCCCCC-CCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 444 VRVTSEDPDDGFKPT-SGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 444 ~RI~aEdp~~~f~P~-~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+++++++|.. .|. .|... ... |++.+.. .+.....+++.+|||+++|+|+++|++++.++++.++|+|
T Consensus 323 ~~~~~~~~~~--~~~~~~~~~---~~~-pg~~v~~----~~~~~~~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 391 (391)
T 1kjq_A 323 AVILPQLTSQ--NVTFDNVQN---AVG-ADLQIRL----FGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG 391 (391)
T ss_dssp EEECCEEEES--SCEEECGGG---SCB-TTEEEEE----CCCCCEEEECCCEEEEEECSSHHHHHHHHHHHHHHCEEEC
T ss_pred EEEEccCccc--ccccccHHH---HhC-CCCEEEE----eccCCCCCCCeEEEEEEecCCHHHHHHHHHHHHhhheecC
Confidence 8999987632 222 23322 223 5553332 1223356778899999999999999999999999999874
No 30
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=1.7e-39 Score=410.77 Aligned_cols=390 Identities=16% Similarity=0.170 Sum_probs=295.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+++||||+|+|..+..++++++++|++++ .+ |..++++..+++|+.+.++ |.|.+.|+++
T Consensus 18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~-----------~v--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~ 77 (433)
T 2dwc_A 18 SAQKILLLGSGELGKEIAIEAQRLGVEVV-----------AV--DRYANAPAMQVAHRSYVGN-------MMDKDFLWSV 77 (433)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCHHHHHSSEEEESC-------TTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--ECCCCChhhhhcceEEECC-------CCCHHHHHHH
Confidence 35799999999999999999999999875 33 3335567889999998874 5778999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
|++.++|+|++++++.+. .+++.|++.|+ ++||++++++.++||..+++++ +++|||+|+|..
T Consensus 78 ~~~~~~d~V~~~~e~~~~--~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~------------- 141 (433)
T 2dwc_A 78 VEREKPDAIIPEIEAINL--DALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMY------------- 141 (433)
T ss_dssp HHHHCCSEEEECSSCSCH--HHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEE-------------
T ss_pred HHHcCCCEEEECcccCCH--HHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeE-------------
Confidence 999999999999987654 46778888998 7799999999999999999999 899999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEecccccee
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~i~VEeyI~g~rei 283 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|+++++|+
T Consensus 142 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~ 211 (433)
T 2dwc_A 142 ----------ATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEV 211 (433)
T ss_dssp ----------ESSHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEE
T ss_pred ----------eCCHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeE
Confidence 678899999999999999999999999999999999999999998776432 24689999999866899
Q ss_pred eEEEEEcC--CCCEEE-eeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 284 EVQLLCDQ--YGNVAA-LHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 284 eVqvl~D~--~G~vi~-l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|.++.+. +|+++. +...--.............|++ ++++..+++.+.+.++++++||+|++++||++++ +++|
T Consensus 212 sv~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~~~~ 288 (433)
T 2dwc_A 212 TELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKG--DKVW 288 (433)
T ss_dssp EECCEEEECTTSCEEEEEECCEEEEESSSSEEEEEESCC-CCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEET--TEEE
T ss_pred EEEEEecccCCCCEeEEEecccceEEEcCEEEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC--CcEE
Confidence 99999875 677432 2111000111111122234776 8899999999999999999999999999999993 4899
Q ss_pred EEEeccCCCCCccee--hhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000086 361 FLELNPRLQVEHPVT--EWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2304)
Q Consensus 361 fLEINpRlqgehpvt--E~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2304)
|+|+|||+++++..+ ..++|+|++++++++++|.|++... +. .+..+...
T Consensus 289 viEiN~R~~~~~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~---------~~-------------------~~~~~~~~ 340 (433)
T 2dwc_A 289 ANEVSPRPHDTGMVTLASHPPGFSEFALHLRAVLGLPIPGEW---------VD-------------------GYRLFPML 340 (433)
T ss_dssp EEEEESSCCGGGGGHHHHSCTTCSHHHHHHHHHHTCCCCCEE---------ET-------------------TEEEECCS
T ss_pred EEEEeCCcCCCcceehhHhccCCCHHHHHHHHHcCCCCCccc---------cc-------------------cccccccc
Confidence 999999999885433 4467999999999999999875200 00 00112234
Q ss_pred eEEEEEEEccCCCCCCCCCC-CCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 439 GHCVAVRVTSEDPDDGFKPT-SGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 439 ghai~~RI~aEdp~~~f~P~-~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
+|++.+++++++|.. .|. .|....+ ..|++.+.. .+.....+++.+|||+++|+|+++|++++.++++.+
T Consensus 341 ~~a~~~~v~~~~~~~--~~~i~g~~~~~---~~pg~~v~~----~~~~~~~~~~~lg~v~~~g~~~~ea~~~~~~~~~~i 411 (433)
T 2dwc_A 341 IPAATHVIKAKVSGY--SPRFRGLVKAL---SVPNATVRL----FGKPEAYVGRRLGIALAWDKDVEVAKRKAEMVAHMI 411 (433)
T ss_dssp SCEEEEEEECSSCEE--SCEEECHHHHT---TSTTEEEEE----CCCSEECTTCEEEEEEEECSSHHHHHHHHHHHHHTC
T ss_pred ccEEEEEEEcCCCCc--CcCcchHHHHh---hCCCcEEEE----ecCCCCCCCCeEEEEEEEeCCHHHHHHHHHHHHhhe
Confidence 788889999987532 222 2322212 334543222 122234577889999999999999999999999999
Q ss_pred EEecc
Q 000086 518 QIRGE 522 (2304)
Q Consensus 518 ~I~G~ 522 (2304)
.++|+
T Consensus 412 ~~~~~ 416 (433)
T 2dwc_A 412 ELRTR 416 (433)
T ss_dssp EEECT
T ss_pred EEEee
Confidence 99993
No 31
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=3.3e-39 Score=399.80 Aligned_cols=360 Identities=20% Similarity=0.217 Sum_probs=293.7
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||||+|+|..+..++++++++||+++ ++ |.+.+.+..++||+ +.. +|.|.+.++++|
T Consensus 1 ~iliiG~g~~g~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~a~~-~~~-------~~~d~~~l~~~~-- 57 (369)
T 3aw8_A 1 MIGILGGGQLGRMLALAGYPLGLSFR-----------FL--DPSPEACAGQVGEL-VVG-------EFLDEGALLRFA-- 57 (369)
T ss_dssp CEEEECCSHHHHHHHHHHTTBTCCEE-----------EE--ESCTTCGGGGTSEE-EEC-------CTTCHHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCChHHHhhce-Eec-------CCCCHHHHHHHH--
Confidence 69999999999999999999999874 33 22345567788998 543 567899999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
.++|+|++++++.. ..+.+.|++.| ++||+++++..++||..++++++++|||+|+|..
T Consensus 58 ~~~d~v~~~~e~~~--~~~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~----------------- 116 (369)
T 3aw8_A 58 EGLALVTYEFENVP--VEAARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHP----------------- 116 (369)
T ss_dssp TTCSEEEECCTTCC--HHHHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEE-----------------
T ss_pred hCCCEEEECCCCcC--HHHHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee-----------------
Confidence 68999999987653 45677888888 7899999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+++.+++.++++++|||+||||..|+ ||+|+++|+|.+|+.++++.+. +.+++||+|+++++|++|+++
T Consensus 117 ------~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~~g~e~sv~~~ 186 (369)
T 3aw8_A 117 ------VDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALG----GRGLILEGFVPFDREVSLLAV 186 (369)
T ss_dssp ------ESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTC----SSSEEEEECCCCSEEEEEEEE
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcC----CCcEEEEEcCCCCEEEEEEEE
Confidence 77899999999999999999999999 9999999999999999887652 568999999986799999999
Q ss_pred EcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCC
Q 000086 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2304)
Q Consensus 289 ~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2304)
.|++|+++.+ +..+..++.+++.....|++.++++..+++.+.+.++++++||+|.+++||+++ .|++||+|+|||+
T Consensus 187 ~d~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~--~~~~~viEiN~R~ 263 (369)
T 3aw8_A 187 RGRTGEVAFY-PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQV--GEELLFNEMAPRV 263 (369)
T ss_dssp ECTTSCEEEC-CCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESSC
T ss_pred ECCCCCEEEE-CCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEEeCCc
Confidence 9988888764 444556666666667788887889999999999999999999999999999999 3889999999999
Q ss_pred CCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEcc
Q 000086 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTS 448 (2304)
Q Consensus 369 qgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~a 448 (2304)
++++..+++++|+|+++.+++.++|.+++.+ ...++++.+++++
T Consensus 264 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~------------------------------------~~~~~~~~~~~~~ 307 (369)
T 3aw8_A 264 HNSGHWTIEGAETSQFENHLRAVLGLPLGST------------------------------------APRGQSAMVNLIG 307 (369)
T ss_dssp CGGGTTHHHHBSSCHHHHHHHHHHTCCCCCC------------------------------------CBCSEEEEEEEES
T ss_pred CCccceeeeeecCCHHHHHHHHHcCCCCCCc------------------------------------cccccEEEEEEeC
Confidence 9988888889999999999999999988531 1235688899998
Q ss_pred CCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000086 449 EDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2304)
Q Consensus 449 Edp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2304)
++| + +.. +...|++.+ .+. |..++ ....+|||+++|+|+++|++++.++++.+.
T Consensus 308 ~~~--------~-~~~--~~~~p~~~~--~~~-g~~~~--~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 308 EKP--------P-FAE--VLKVEGAHL--HWY-GKAVR--PGRKVGHITLRRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp CCC--------C-HHH--HHTSTTEEE--EEC-CCCCC--TTCEEEEEEEEESSHHHHHHHHHHHHTTSS
T ss_pred CCc--------h-HHH--hccCCCcEE--EEe-cCCCC--CCCeEEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 762 1 222 122345421 121 22222 236799999999999999999999999876
No 32
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=9.7e-39 Score=402.62 Aligned_cols=372 Identities=20% Similarity=0.230 Sum_probs=297.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+.+||||+|+|+.+.+++++++++||+++ +. |.++++++.++||+++.. +|.|.+.|.++
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~-----------v~--d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~~ 93 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVA-----------VL--DPDPASPAGAVADRHLRA-------AYDDEAALAEL 93 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--CSCTTCHHHHHSSEEECC-------CTTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--CCCCcCchhhhCCEEEEC-------CcCCHHHHHHH
Confidence 34799999999999999999999999974 33 566789999999998864 57889999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+ ++|+|+++ +...+..+.+.|++. .++||++++++.++||..+|++++++|||+|+|..
T Consensus 94 a~--~~D~V~~~--~e~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 153 (419)
T 4e4t_A 94 AG--LCEAVSTE--FENVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVV-------------- 153 (419)
T ss_dssp HH--HCSEEEEC--CTTCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEE--------------
T ss_pred Hh--cCCEEEEc--cCcCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEE--------------
Confidence 94 68999966 445555677888877 38999999999999999999999999999999876
Q ss_pred CcccccccccCCHHHHHHHhhc----cCCcEEEeec-CCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000086 207 PDDVYRQACVYTTEEAIASCQV----VGYPAMIKAS-WGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~----IGyPVVIKPs-~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~r 281 (2304)
+.+.+++.+++++ + ||+||||. .|+||+|+++|+|.+|+.++++.+ .+.+++||+|+++++
T Consensus 154 ---------v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~ 219 (419)
T 4e4t_A 154 ---------IESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL----GGVPCVLEKRLPLKY 219 (419)
T ss_dssp ---------ECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT----TTCCEEEEECCCEEE
T ss_pred ---------ECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc----CCCcEEEeecCCCCe
Confidence 7889999988888 9 99999999 889999999999999999999875 357899999999889
Q ss_pred eeeEEEEEcCCCCEEEeeccccccccccc-eEEE--eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQ-KIIE--EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 282 eieVqvl~D~~G~vi~l~~RdcSvqrr~q-Kiie--eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
|++|.+++|..|+++.+.. ++++|+ ++.. ..|++.++++..+++.+.+.++++++||+|+++|||++++ +|+
T Consensus 220 Eisv~v~~~~~G~~~~~~~----~e~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG~ 294 (419)
T 4e4t_A 220 EVSALIARGADGRSAAFPL----AQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DGS 294 (419)
T ss_dssp EEEEEEEECTTSCEEECCC----EEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TCC
T ss_pred EEEEEEEEcCCCCEEEEeC----eEEEeeCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CCC
Confidence 9999999999999877642 334443 4444 5688778999999999999999999999999999999994 678
Q ss_pred EEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000086 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2304)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2304)
+||+|+|||+++++++++.++|+|+++.++++++|.|++.+ . ..
T Consensus 295 ~~v~EiNpR~~~sg~~t~~~~~~s~~~~~~ra~~G~pl~~~---------------------------------~---~~ 338 (419)
T 4e4t_A 295 FVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNP---------------------------------R---QH 338 (419)
T ss_dssp EEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCC---------------------------------C---BC
T ss_pred EEEEEEeCCCCCCCCeEeeccCCCHHHHHHHHHcCCCCCCc---------------------------------c---cc
Confidence 99999999999999999999999999999999999998631 0 01
Q ss_pred eEEEEEEEccCC-CCCC--CCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhc
Q 000086 439 GHCVAVRVTSED-PDDG--FKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515 (2304)
Q Consensus 439 ghai~~RI~aEd-p~~~--f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~ 515 (2304)
..++.+.+..+. +... -.+....+.. +...|++.+...-++.. .-...+|||.+.|+|.++|++++..+.+
T Consensus 339 ~~~~m~n~lg~~~~~~~~~~~~~~~~~~~--~l~~p~~~~~~ygk~~~----~~~rkmGhv~~~~~~~~~~~~~a~~~~~ 412 (419)
T 4e4t_A 339 SPAAMLNILGDVWFPNGAAAGAVTPPWDT--VAAMPAAHLHLYGKEEA----RVGRKMGHVNFTAEMRDDAVAAATACAQ 412 (419)
T ss_dssp SCEEEEEEEGGGGCTTCGGGCCCCCCHHH--HHTSTTEEEEECCCSCC----CTTCEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCccccccccccccchHHHH--HHhCCCCEEEECCCCCC----CCCCceEEEEEEeCCHHHHHHHHHHHHH
Confidence 224455565431 1000 0011111111 23346664443222111 1124589999999999999999999988
Q ss_pred ceEE
Q 000086 516 EIQI 519 (2304)
Q Consensus 516 el~I 519 (2304)
.+.|
T Consensus 413 ~l~~ 416 (419)
T 4e4t_A 413 LLRV 416 (419)
T ss_dssp HHTC
T ss_pred hcCc
Confidence 7754
No 33
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=5.9e-38 Score=393.77 Aligned_cols=369 Identities=14% Similarity=0.152 Sum_probs=298.9
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc--EEEEccCCCCCCCccCHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD--QFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~AD--e~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.+||||+|+|+.+..++++++++||+++ +. | ..+++..++|| ..+.. +|.|.+.|.+
T Consensus 24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~-----------~~--d-~~~~p~~~~ad~~~~~~~-------~~~d~~~l~~ 82 (403)
T 3k5i_A 24 SRKVGVLGGGQLGRMLVESANRLNIQVN-----------VL--D-ADNSPAKQISAHDGHVTG-------SFKEREAVRQ 82 (403)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEE-----------EE--E-STTCTTGGGCCSSCCEES-------CTTCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--E-CCCCcHHHhccccceeec-------CCCCHHHHHH
Confidence 5899999999999999999999999985 33 3 46788889999 44432 6789999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
++++ +|+|.+++.+. +..+.+.|++ |+. +||++++++.+.||..++++++++|||+|||..
T Consensus 83 ~a~~--~d~i~~e~e~~--~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~------------- 143 (403)
T 3k5i_A 83 LAKT--CDVVTAEIEHV--DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRE------------- 143 (403)
T ss_dssp HHTT--CSEEEESSSCS--CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEE-------------
T ss_pred HHHh--CCEEEECCCCC--CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEE-------------
Confidence 9986 68998775544 4457788888 987 899999999999999999999999999999876
Q ss_pred cCcccccccccC--CHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccce
Q 000086 206 IPDDVYRQACVY--TTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 206 v~~~~~~~~~V~--s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~re 282 (2304)
+. +.+++.++++++|||+||||..|+ ||+|+++|++.+|+.++++.+. +.+++||+|+++++|
T Consensus 144 ----------~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~i~~~~E 209 (403)
T 3k5i_A 144 ----------LVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK----DRPLYAEKWAYFKME 209 (403)
T ss_dssp ----------ESSCCHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTT----TSCEEEEECCCEEEE
T ss_pred ----------EcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcC----CCcEEEecCCCCCeE
Confidence 55 899999999999999999999998 9999999999999999998753 568999999997899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++|.++.|+.| +..++..+.+++.+.+.....|++.++++..+++.+.+.++++++||+|.++|||++++ +|++||+
T Consensus 210 ~sv~v~~~~~g--~~~~p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg~~~v~ 286 (403)
T 3k5i_A 210 LAVIVVKTKDE--VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLE-DDSIMLC 286 (403)
T ss_dssp EEEEEEECSSC--EEECCCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TSCEEEE
T ss_pred EEEEEEEcCCC--EEEeCCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCcEEEE
Confidence 99999999888 55677778888888777778898878999999999999999999999999999999994 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||++++...+...+|+|++++++++++|.|++.. .....++++
T Consensus 287 EiNpR~~~sg~~~~~~~~~s~~~~~~ra~~G~pl~~~----------------------------------~~~~~~~a~ 332 (403)
T 3k5i_A 287 EIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIPAQ----------------------------------SLEIRQPSI 332 (403)
T ss_dssp EEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCGG----------------------------------GGSBSSCEE
T ss_pred EeecCCCCCCceeeeecCCCHHHHHHHHHcCCCCCcc----------------------------------cccCCCcEE
Confidence 9999999864444457899999999999999998631 011234577
Q ss_pred EEEEccCCCCCCCCCCCCccccc-cccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQEL-SFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l-~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
.+.+..++... + .+..+ .+...|++.+...-++.. .-...+|||.+.|+|.++|++++.++++.+
T Consensus 333 m~nilg~~~~~---~---~~~~~~~~~~~p~~~~~~ygk~~~----~~~rkmGhv~~~~~~~~~~~~~a~~~~~~~ 398 (403)
T 3k5i_A 333 MLNIIGGAAPD---T---HLQAAECALSIPNASIHLYSKGAA----KPGRKMGHITVTAPTMHEAETHIQPLIDVV 398 (403)
T ss_dssp EEEEECCSSSS---H---HHHHHHHHTTSTTEEEEECCCCSC----CTTCEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCCccc---c---chhHHHHHhcCCCCEEEECCCCCC----CCCCeeEEEEEEcCCHHHHHHHHHHHHhhh
Confidence 77777654210 1 11111 123356664433222111 113458999999999999999999998765
No 34
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-37 Score=381.70 Aligned_cols=368 Identities=16% Similarity=0.178 Sum_probs=283.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||||+|+|..+..++++++++|++++ ++ |.+.+.+..+++|+++.++ |.|.+.+.+++
T Consensus 1 M~~Ililg~g~~g~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~~ 60 (380)
T 3ax6_A 1 MKKIGIIGGGQLGKMMTLEAKKMGFYVI-----------VL--DPTPRSPAGQVADEQIVAG-------FFDSERIEDLV 60 (380)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCTTGGGSSEEEECC-------TTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhCceEEECC-------CCCHHHHHHHH
Confidence 4799999999999999999999999874 33 2233455677899888763 56789999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
.++|+|+++++... ..+.+.|++.|++ +||++++++.++||..++++++++|||+|+|..
T Consensus 61 --~~~d~v~~~~e~~~--~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--------------- 120 (380)
T 3ax6_A 61 --KGSDVTTYDLEHID--VQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKL--------------- 120 (380)
T ss_dssp --HTCSEEEESCSCSC--HHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred --hcCCEEEecccCCC--HHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEE---------------
Confidence 57999999876543 3466788889987 689999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+++.++ +++++|||+||||..|+ ||+|+++|++.+|+.++++ .+++||+|+++++|++|.
T Consensus 121 --------~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~--------~~~lvEe~i~~g~e~sv~ 181 (380)
T 3ax6_A 121 --------VKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK--------GETYLEEFVEIEKELAVM 181 (380)
T ss_dssp --------CSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC--------SSEEEEECCCEEEEEEEE
T ss_pred --------eCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc--------CCEEEEeccCCCeeEEEE
Confidence 567766 56789999999999999 9999999999999876654 589999999866999999
Q ss_pred EEEcCCCCEEEeecccccc--ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 287 LLCDQYGNVAALHSRDCSV--QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSv--qrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
++.|+.|++..+... +.. ++.+.......|+. ++++..+++.+.+.++++++||.|.+++||++++ +|++||+|+
T Consensus 182 ~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g~~~viEi 258 (380)
T 3ax6_A 182 VARNEKGEIACYPVV-EMYFDEDANICDTVIAPAR-IEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QGEILVNEI 258 (380)
T ss_dssp EEECSSCCEEEEEEE-EEC--------CEEEESCS-SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSCEEEEEE
T ss_pred EEECCCCCEEEECCe-eeeecccCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEe
Confidence 999988887654322 222 33333333456877 8899999999999999999999999999999994 678999999
Q ss_pred ccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000086 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2304)
Q Consensus 365 NpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~ 444 (2304)
|||+++++..+.+.+|+|++..+++.++|.+++.. . ..++++.+
T Consensus 259 N~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---------------------------------~---~~~~~~~~ 302 (380)
T 3ax6_A 259 APRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGST---------------------------------E---LLIPAVMV 302 (380)
T ss_dssp ESSCCGGGTHHHHHBSSCHHHHHHHHHTTCCCCCC---------------------------------C---BCSCEEEE
T ss_pred cCCCCCCceeehhhccccHHHHHHHHHhCCCCCCc---------------------------------c---ccCceEEE
Confidence 99999988888889999999999999999988631 0 01225567
Q ss_pred EEccCCCCCCCCC-CCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 445 RVTSEDPDDGFKP-TSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 445 RI~aEdp~~~f~P-~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
++.+++...+..+ ..| +..+ ..|++.++. .|.... .....+|||++.|+|+++|++++.++++.+.++-
T Consensus 303 ~~l~~~~~~~~~~~~~~-~~~~---~~p~~~~~~---~g~~~~-~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 372 (380)
T 3ax6_A 303 NLLGEEGYYGKPALIGL-EEAL---AIEGLSLHF---YGKKET-RPYRKMGHFTVVDRDVERALEKALRAKKILKVVS 372 (380)
T ss_dssp EEEBCTTCCBSEEEESH-HHHH---TSTTEEEEE---CCCSCB-CBTCEEEEEEEECSSHHHHHHHHHHHTTTCEEEE
T ss_pred EEecccccccccccchh-HHHh---cCCCCEEEe---cCCCCC-CCCCeeEEEEEEeCCHHHHHHHHHHHHhhhhhhc
Confidence 7777653211112 233 4433 345654332 222221 2345699999999999999999999999999875
No 35
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=100.00 E-value=1.8e-36 Score=382.13 Aligned_cols=376 Identities=18% Similarity=0.229 Sum_probs=285.4
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+|.....+++++ +++|++++ + +.+. +......+| .+.+ +|.|.+.|+++|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~~~~-------~~~d~~~l~~~~~ 59 (424)
T 2yw2_A 2 KVLVVGNGGREHAIAWKVAQSPLVKEL---------Y-VAKG----NAGIWEIAK-RVDI-------SPTDVEKLAEFAK 59 (424)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTCSEE---------E-EEEC----CTTGGGTSE-EECS-------CTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhhCCCCCEE---------E-EECC----Ccchhhhcc-cccC-------CcCCHHHHHHHHH
Confidence 799999985444444443 56787764 2 2222 333445565 3322 5678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|+||.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (424)
T 2yw2_A 60 NEGVDFTIVGPEAPL-VEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEV---------------- 122 (424)
T ss_dssp HHTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEE----------------
T ss_pred HcCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999999843211 124678888999999999999999999999999999999999999865
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~s 194 (424)
T 2yw2_A 123 -------FTDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEAS 194 (424)
T ss_dssp -------ESCHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEE
T ss_pred -------ECCHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEE
Confidence 778999999999999999999999999999999999999999999886531 1368999999985 8999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHH-HHHHHHHHHHC-----Cceeee
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVGAA 346 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m-~e~A~rlakal-----Gy~Ga~ 346 (2304)
|.++.| |+.+.. ...+++|+++.+ ..|++.+++++.+++ ++.+.++++++ +|.|++
T Consensus 195 v~~~~~--G~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (424)
T 2yw2_A 195 YIVMIN--GDRYVP----LPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFL 268 (424)
T ss_dssp EEEEEE--TTEEEE----CCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEEc--CCEEEe----ecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 999986 444443 234566666654 257766888888888 46787777765 889999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2304)
++||++++ +| +||+|+|||+++.. ...+..+|+|+++.+++++.|. ++.+
T Consensus 269 ~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~-------------------------- 319 (424)
T 2yw2_A 269 YAGLMITK-EG-PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK-DVHI-------------------------- 319 (424)
T ss_dssp EEEEEEET-TE-EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC-CCCC--------------------------
T ss_pred EEEEEEeC-CC-cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcc--------------------------
Confidence 99999994 44 99999999998653 3345568999999999999996 3310
Q ss_pred CCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccc-cCCCcEEEEEeeeeCCcc----cccCCCccEEEEEE
Q 000086 426 PFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSF-KSKPNVWAYFSVKSGGGI----HEFSDSQFGHVFAF 499 (2304)
Q Consensus 426 ~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~-i~~l~~-~s~~~V~~~~~v~~G~~i----~~~~Ds~~g~via~ 499 (2304)
.+ ..+|+++++++++++.. .|..|. |..+.. ...|+++++. .|..+ ......++|||+++
T Consensus 320 ~~---------~~~~a~~~~~~~~g~~~--~~~~g~~i~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~r~~~v~~~ 385 (424)
T 2yw2_A 320 KE---------DERYALDVVLASRGYPE--KPETGKIIHGLDYLKSMEDVVVFH---AGTKKEGNFTVTSGGRVLNVCAY 385 (424)
T ss_dssp CB---------CSSEEEEEEEECTTTTS--SCCCCCBCBCHHHHHTSTTEEEEE---SSEEEETTEEEECSSEEEEEEEE
T ss_pred cc---------cCCcEEEEEEecCCCCC--CCCCCCcCcCcccccCCCCeEEEE---cceEeeCCEEEecCCcEEEEEEE
Confidence 11 13688999999876432 355665 554432 2346765432 23222 22344668999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000086 500 GESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+|+++|+++++++++++.++|
T Consensus 386 g~~~~~a~~~~~~~~~~i~~~g 407 (424)
T 2yw2_A 386 GKTLKEAKERAYEAIRYVCFEG 407 (424)
T ss_dssp ESSHHHHHHHHHHHHTTCBCTT
T ss_pred eCCHHHHHHHHHHHHhcceeCC
Confidence 9999999999999999999999
No 36
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=7.5e-37 Score=390.66 Aligned_cols=376 Identities=15% Similarity=0.130 Sum_probs=305.5
Q ss_pred eeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCC--CchHHHHHHCCCe
Q 000086 81 ILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEI--PELPDTLSTKGII 158 (2304)
Q Consensus 81 i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn--~~la~~l~~~GI~ 158 (2304)
+..|+++...|.+...++++.||+.+.+++......+..++.|+++|+++++|+|+|+ +|+ ..+++.+++.|+.
T Consensus 52 ~~~Vav~~~~D~~~~~p~~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip~----sE~~l~~~a~~~e~~Gi~ 127 (474)
T 3vmm_A 52 KYSVAVIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTN----NELFIAPMAKACERLGLR 127 (474)
T ss_dssp HHEEEEEECGGGCSSGGGGCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEES----CGGGHHHHHHHHHHTTCC
T ss_pred ceEEEEEeCCCcccCCcchhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEC----CcccHHHHHHHHHHcCCC
Confidence 6788888888887888889999999988665555566778999999999999999995 555 5688999999987
Q ss_pred EECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeec
Q 000086 159 FLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKAS 238 (2304)
Q Consensus 159 fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs 238 (2304)
||++++++.++||..++++++++|||+|+|.. +.+.+++.++++++||||||||.
T Consensus 128 --g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~-----------------------v~s~ee~~~~~~~lg~PvVVKP~ 182 (474)
T 3vmm_A 128 --GAGVQAAENARDKNKMRDAFNKAGVKSIKNKR-----------------------VTTLEDFRAALEEIGTPLILKPT 182 (474)
T ss_dssp --CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEE-----------------------ECSHHHHHHHHHHSCSSEEEEES
T ss_pred --CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999765 78899999999999999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHhh----------CCCCcEEEEEeccccce-----------eeEE-EEEcCCCCEE
Q 000086 239 WGGGGKGIRKVHNDDEVRALFKQVQGE----------VPGSPIFIMKVASQSRH-----------LEVQ-LLCDQYGNVA 296 (2304)
Q Consensus 239 ~GgGGkGIr~V~s~eEL~~a~~~~~~e----------~~~~~i~VEeyI~g~re-----------ieVq-vl~D~~G~vi 296 (2304)
.|+||+|+++|++.+||.++++.+..+ ..+.+++||+|++|.+| +++. ++.|+.+.++
T Consensus 183 ~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v 262 (474)
T 3vmm_A 183 YLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPI 262 (474)
T ss_dssp SCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEE
T ss_pred CCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEE
Confidence 999999999999999999999987654 23578999999998764 7776 5667777778
Q ss_pred EeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeee-EEEEEEEccCCcEEEEEeccCCC--CCcc
Q 000086 297 ALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA-TVEYLYSMETGEYYFLELNPRLQ--VEHP 373 (2304)
Q Consensus 297 ~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~-tVEfl~d~~~g~~yfLEINpRlq--gehp 373 (2304)
.+..++|+.+ +++..+.+|++ ++++..++|.+.+.++++++||+|.+ ++||++++ +|++||||+|||++ .+|+
T Consensus 263 ~i~~~~~~~~--~~~~~~~~Pa~-l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg~~~~iEvNpR~~G~~~~~ 338 (474)
T 3vmm_A 263 AIHDKTPQIG--FTETSHITPSI-LDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NREPGLIESAARFAGWNMIP 338 (474)
T ss_dssp EEEEECCCBT--TBCCEEEESCC-CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GGEEEEEEEESSCCSTTHHH
T ss_pred EEEeeccCCC--ccceEEEECCC-CCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CCCEEEEEEeCCCCCCchHH
Confidence 8889999887 77888899995 89999999999999999999999888 59999995 67899999999999 5689
Q ss_pred eehhhhcCCHHHHHHHHHc-CCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCC
Q 000086 374 VTEWIAEINLPAAQVAVGM-GIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPD 452 (2304)
Q Consensus 374 vtE~vtGVDL~~~qL~iA~-G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~ 452 (2304)
++++++|+|++++++++++ |.+++..+ .......+++.+|++.++++.
T Consensus 339 ~~~~~tG~dl~~~~i~~a~~G~~l~~~~-------------------------------~~~~~~~~~~~~~~~~p~~~~ 387 (474)
T 3vmm_A 339 NIKKVFGLDMAQLLLDVLCFGKDADLPD-------------------------------GLLDQEPYYVADCHLYPQHFK 387 (474)
T ss_dssp HHHHHHCCCHHHHHHHHHHHGGGSCCCS-------------------------------SCCCCCSSEEEEEEECHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCCCCCc-------------------------------ccccCCCceeEEEEEeccccc
Confidence 9999999999999999999 99886421 011123577778888776643
Q ss_pred C-CCCC-CCC--ccccccccCC----CcEEEEEe-eee----CCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 453 D-GFKP-TSG--KVQELSFKSK----PNVWAYFS-VKS----GGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 453 ~-~f~P-~~G--~i~~l~~~s~----~~V~~~~~-v~~----G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
. +-.| ..+ .|..+..|.+ ..+.+..+ ... ...+-.-|||.++-++ .|.++++..+.++..|+..++
T Consensus 388 ~~~~~p~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 466 (474)
T 3vmm_A 388 QNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFEL-KGSNSQDVAESIRQIQQHAKL 466 (474)
T ss_dssp HTTSSCTTCEEEEEEEEECCTTCCCTTCEEEEEEECCTTEEECTTSCGGGCCCEEEEE-EESCHHHHHHHHHHHHHHCEE
T ss_pred cccccCCcccceeecceecccceecccceEeeccCCCCCceEEEEeehhccCceeEEe-ccccHHHHHHHHHHHHHhhhh
Confidence 2 1122 222 2344444432 12233221 111 2244556999988777 999999999999999999888
Q ss_pred ec
Q 000086 520 RG 521 (2304)
Q Consensus 520 ~G 521 (2304)
..
T Consensus 467 ~~ 468 (474)
T 3vmm_A 467 TA 468 (474)
T ss_dssp EE
T ss_pred hh
Confidence 75
No 37
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=5.2e-36 Score=377.18 Aligned_cols=374 Identities=17% Similarity=0.252 Sum_probs=284.3
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+|.....+++++ +++|++++ + +.+. +......++ . ++ +|.|.+.|+++|+
T Consensus 2 kililG~g~r~~a~a~~l~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~------~~~d~~~l~~~~~ 58 (417)
T 2ip4_A 2 KVLVVGSGGREHALLWKAAQSPRVKRL---------Y-AAPG----NAGMEALAE-L--VP------WNGDVEALADWAL 58 (417)
T ss_dssp EEEEEESSHHHHHHHHHHHTCSSCCEE---------E-EEEC----CTTGGGTSE-E--CC------CCSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE---------E-EECC----Ccchhhhcc-c--CC------CccCHHHHHHHHH
Confidence 799999986566666666 45787764 1 2222 222333344 3 32 4678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 59 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~---------------- 121 (417)
T 2ip4_A 59 AEGIDLTLVGPEAPL-VEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRV---------------- 121 (417)
T ss_dssp HHTCCEEEECSSHHH-HTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEE----------------
T ss_pred HcCCCEEEECCchHH-HHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeee----------------
Confidence 999999999854321 124778888899999999999999999999999999999999999865
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.....+.+++||+|++| +|++|.++
T Consensus 122 -------~~~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~ 193 (417)
T 2ip4_A 122 -------FREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLAL 193 (417)
T ss_dssp -------ESSHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEE
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEE
Confidence 7789999999999999999999999999999999999999999998863333478999999985 79999999
Q ss_pred EcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHH-HHHHHHHHHHC-----CceeeeEEEE
Q 000086 289 CDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVGAATVEY 350 (2304)
Q Consensus 289 ~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m-~e~A~rlakal-----Gy~Ga~tVEf 350 (2304)
.| |+.+..+ .++++|++..+ ..|++ +++++.+++ ++.+.++++++ +|.|++++||
T Consensus 194 ~~--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~ 266 (417)
T 2ip4_A 194 TD--GETILPL----LPSQDHKRLLDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGL 266 (417)
T ss_dssp ES--SSCEEEC----CCBEECCEEETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred Ee--CCEEEEc----chheechhhccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 86 4443332 23455555432 35777 888888888 66777777765 8899999999
Q ss_pred EEEccCCcEEEEEeccCCCCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCc
Q 000086 351 LYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429 (2304)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgehp-vtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~ 429 (2304)
++++ +| +||+|+|||+++... ..+..+|+|+++.+++++.|. ++. ..+.|
T Consensus 267 ~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~------------------------~~~~~-- 317 (417)
T 2ip4_A 267 MLTR-EG-PKVLEFNARFGDPEAQALLPLLENDLVELALRVAEGR-LAG------------------------TRLSW-- 317 (417)
T ss_dssp EECS-SC-EEEEEEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC-GGG------------------------CCCCB--
T ss_pred EEeC-CC-eEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCc------------------------CCccc--
Confidence 9984 55 999999999987642 334568999999999999996 321 01111
Q ss_pred cccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccccCCCcEEEEEeeeeCCccc----ccCCCccEEEEEEeCCHH
Q 000086 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSFKSKPNVWAYFSVKSGGGIH----EFSDSQFGHVFAFGESRA 504 (2304)
Q Consensus 430 ~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~-i~~l~~~s~~~V~~~~~v~~G~~i~----~~~Ds~~g~via~G~~re 504 (2304)
..++++.+++.++++.. .|..|. |..+... |+++++. .|..+. ....+++|||+++|+|++
T Consensus 318 -------~~~~~~~~~l~~~~~~~--~~~~g~~i~~~~~~--~~v~~~~---~g~~~~~~~~~~~~~rv~~v~~~g~~~~ 383 (417)
T 2ip4_A 318 -------KEGAAACVVLAAPGYPE--SPRKGIPLHVPEPP--EGVLVFH---AGTRREGGRLVSAGGRVLNVVGLGRDLK 383 (417)
T ss_dssp -------CSSEEEEEEEECTTTTT--SCCCCCBCBCCCCC--TTEEEEE---SSEEESSSSEEECSSEEEEEEEEESSHH
T ss_pred -------cCCcEEEEEEeCCCCCC--CCCCCCcccccCCC--CCeEEEE---CceEeeCCeEEecCCcEEEEEEEcCCHH
Confidence 12688999998876433 466776 6555432 6765432 333221 123345899999999999
Q ss_pred HHHHHHHHhhcceEEec
Q 000086 505 LAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 505 eA~~~l~~AL~el~I~G 521 (2304)
+|++++.+++++++++|
T Consensus 384 ~a~~~~~~~~~~i~~~~ 400 (417)
T 2ip4_A 384 EALERAYAYIPQVGFPG 400 (417)
T ss_dssp HHHHHHHHHGGGSBCTT
T ss_pred HHHHHHHHHHhcCccCC
Confidence 99999999999999998
No 38
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=2.4e-36 Score=372.46 Aligned_cols=336 Identities=14% Similarity=0.119 Sum_probs=268.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||+|+|+|+.+.+++.+++++||+++ .. | ++++. ..+ +
T Consensus 1 Mk~igilGgGqlg~m~~~aa~~lG~~v~-----------~~--~--~~a~~-------~~~----------~-------- 40 (355)
T 3eth_A 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVW-----------PV--G--LDAEP-------AAV----------P-------- 40 (355)
T ss_dssp CCEEEEESCSHHHHHHHHHHGGGTCEEE-----------EE--C--TTCCG-------GGC----------C--------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------CC--C--CCCCc-------eEE----------c--------
Confidence 5789999999999999999999999873 22 2 23322 011 1
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
.++|+|+|++++.+.+ +.+.|++.| ++||++++++.++||..+|++++++|||+|||..
T Consensus 41 --l~~d~it~e~e~v~~~--~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~--------------- 99 (355)
T 3eth_A 41 --FQQSVITAEIERWPET--ALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQL--------------- 99 (355)
T ss_dssp --CTTSEEEESCSCCCCC--HHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred --ccCCEEEECcCCcCHH--HHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEE---------------
Confidence 1899999999988754 888899887 7899999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCC-CCCcCeEEECC--HHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWG-GGGKGIRKVHN--DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~G-gGGkGIr~V~s--~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||+.| +||+|+++|++ .+|+.+++ . + +++||+|+++++|++
T Consensus 100 --------v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~---~----~-~vivEe~I~~~~Eis 163 (355)
T 3eth_A 100 --------LAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC---Y----G-ECIVEQGINFSGEVS 163 (355)
T ss_dssp --------ECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG---T----T-TEEEEECCCCSEEEE
T ss_pred --------ECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh---h----C-CEEEEEccCCCcEEE
Confidence 6788889899999999999999985 78999999999 99988743 1 2 699999999889999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
|.+++|.+|++..+.. .+.+++.+.......|+ .+++++.+++.+.|.++++++||+|+++|||+++ ++++||+|+
T Consensus 164 v~v~~~~~G~~~~~p~-~e~~~~~g~~~~~~~pa-~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~--~~~~~v~Ei 239 (355)
T 3eth_A 164 LVGARGFDGSTVFYPL-THNLHQDGILRTSVAFP-QANAQQQARAEEMLSAIMQELGYVGVMAMECFVT--PQGLLINEL 239 (355)
T ss_dssp EEEEECTTSCEEECCC-EEEEEETTEEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEE
T ss_pred EEEEEcCCCCEEEECC-EEEEeeCCeEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEe
Confidence 9999999999876533 23455555433334455 4899999999999999999999999999999999 578999999
Q ss_pred ccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000086 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2304)
Q Consensus 365 NpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~ 444 (2304)
|||+++++++|+.++|+|+++.++++++|.|++.+ ...++++.+
T Consensus 240 npR~~~sg~~t~~~~~~s~fe~~~ra~~G~pl~~~------------------------------------~~~~~~~m~ 283 (355)
T 3eth_A 240 APRVHNSGHWTQNGASISQFELHLRAITDLPLPQP------------------------------------VVNNPSVMI 283 (355)
T ss_dssp ESSCCGGGTTHHHHSSSCHHHHHHHHHTTCCCCCC------------------------------------CCCSCEEEE
T ss_pred eCCCCCCccEEeeeecCCHHHHHHHHHcCCCCCCc------------------------------------cccCceEEE
Confidence 99999999999999999999999999999998631 112346677
Q ss_pred EEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 445 RVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 445 RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
.|..++ + ... +...|++.+.+. |... .-...+|||.+.|+|.++|++++..+.+.+
T Consensus 284 nilg~~---------~-~~~--~~~~p~~~~~~y---gk~~--r~~rkmGhv~~~~~~~~~~~~~~~~~~~~~ 339 (355)
T 3eth_A 284 NLIGSD---------V-NYD--WLKLPLVHLHWY---DKEV--RPGRKVGHLNLTDSDTSRLTATLEALIPLL 339 (355)
T ss_dssp EEESCC---------C-CGG--GGGSTTCEEEEC---CCCC--CTTCEEEEEEEECSCHHHHHHHHHHHGGGS
T ss_pred EEecch---------H-HHH--HHhCCCCEEEEc---CCCC--CCCCeeEEEEEEcCCHHHHHHHHHHHHHHh
Confidence 777654 1 111 222344433221 1111 123459999999999999999999998776
No 39
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=1.8e-36 Score=374.56 Aligned_cols=358 Identities=18% Similarity=0.175 Sum_probs=238.4
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||||+|+|..+..++++++++|++++ ++ |.+.+.+..+++|+++..| .+.+++
T Consensus 1 M~~Ililg~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~~------------~l~~~~ 55 (365)
T 2z04_A 1 MLTVGILGGGQLGWMTILEGRKLGFKFH-----------VL--EDKENAPACRVADRCFRTG------------QISEFV 55 (365)
T ss_dssp -CEEEEECCSHHHHHHHHHHGGGTCEEE-----------EE--CSSSSCHHHHHSSEEECGG------------GHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhccceeeHH------------HHHHHh
Confidence 5799999999999999999999999975 34 3445567788999887653 577777
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
.++|+|+++++.... .+.+.|+. ++||++++++.++||..++++++++|||+|+|..
T Consensus 56 --~~~d~v~~~~e~~~~--~~~~~l~~----~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--------------- 112 (365)
T 2z04_A 56 --DSCDIITYEFEHIKD--EVLEKCES----KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLV--------------- 112 (365)
T ss_dssp --HHCSEEEESSSCCCH--HHHHHHTT----TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEE---------------
T ss_pred --hcCCEEEECCCCCcH--HHHHHHhh----hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEE---------------
Confidence 568999998643221 13444432 8899999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
++ .+++.++++++|||+||||..|+ ||+|+++|++.+|+.++++.+.. +.+++||+|+++++|++|+
T Consensus 113 --------~~-~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~---~~~~lvEe~i~~g~e~sv~ 180 (365)
T 2z04_A 113 --------IK-RDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK---EESFIIEEFVKFEAEISCI 180 (365)
T ss_dssp --------C---------------CEEEECC---------------------------------CEEEECCCCSEEEEEE
T ss_pred --------Ec-HHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhcc---CCCEEEEccCCCCEEEEEE
Confidence 55 67777888899999999999999 99999999999999999887642 4689999999866999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
++.|++|+++.+...++ .++.+.......|++. .+++.+.+.++++++||+|.+++||++++ +|++||+|+||
T Consensus 181 ~~~d~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g~~~~iEiN~ 253 (365)
T 2z04_A 181 GVRDREGKTYFYPQPFN-KHEEGILIYNYVPYAK-----LKEAEEITKRLMELLDIVGVFTVEFFLLK-DGRVLINEFAP 253 (365)
T ss_dssp EEECTTCCEEECCEEEE-EEETTEEEEEEEEEEC-----CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEES
T ss_pred EEECCCCCEEEECCEEE-EEeCCEeEEEECCHhH-----HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CCcEEEEEecc
Confidence 99998898877654443 2333333334456542 56789999999999999999999999984 67799999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
|+++....+...+|+|++..+++.++|.+++.. + ..++++.+++
T Consensus 254 R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~--------------------------------~----~~~~~~~~~~ 297 (365)
T 2z04_A 254 RVHNTGHWTLDGAYTSQFENLLRAITEMPLGST--------------------------------E----LKLPSGMVNI 297 (365)
T ss_dssp SCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCC--------------------------------C----BSSCEEEEEE
T ss_pred CcCCCceEEeeccccCHHHHHHHHHhCCCCCCc--------------------------------c----ccCCEEEEEE
Confidence 999743336778999999999999999998631 0 0123567888
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
.++++. | +.+..+ ...|++.+. +. |. ....+..+|||+++|+|+++|++++.++++.+.++|
T Consensus 298 ~~~~~~----~--~~~~~~--~~~~~~~~~--~~-g~--~~~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 359 (365)
T 2z04_A 298 LGKSYE----E--IPLKEI--LSVEGAKLY--WY-GK--EKKPRRKVGHVNVVGRSKEEVVEKVERVFTLLKGSR 359 (365)
T ss_dssp ESCCGG----G--SCHHHH--TTSTTEEEE--EC-CC--CCCTTCEEEEEEEECSSHHHHHHHHHHHHHC-----
T ss_pred ECCccc----c--chHHHH--hcCCCCEEE--ec-CC--CCCCCCeEEEEEEecCCHHHHHHHHHHHHHHhhhcc
Confidence 876521 3 444433 234565332 21 33 223367799999999999999999999999999999
No 40
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=8.3e-36 Score=372.36 Aligned_cols=295 Identities=18% Similarity=0.203 Sum_probs=254.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
.+||||+|+|.++..++++++++||+++ +. |.+.+++..++||+.+.. +|.|.+.+.+++
T Consensus 14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi-----------~~--d~~~~~~~~~~ad~~~~~-------~~~d~~~l~~~~ 73 (389)
T 3q2o_A 14 GKTIGIIGGGQLGRMMALAAKEMGYKIA-----------VL--DPTKNSPCAQVADIEIVA-------SYDDLKAIQHLA 73 (389)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCTTTTTCSEEEEC-------CTTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchHHhCCceEec-------CcCCHHHHHHHH
Confidence 4699999999999999999999999985 33 455677888999998874 678899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
++ +|+|.++++ ..+..+.+.|++.|+ +||+++++..+.||..++++++++|||+|+|..
T Consensus 74 ~~--~dvI~~~~e--~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 132 (389)
T 3q2o_A 74 EI--SDVVTYEFE--NIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRL--------------- 132 (389)
T ss_dssp HT--CSEEEESCC--CCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred Hh--CCEeeeccc--cccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE---------------
Confidence 76 688876544 445567788888885 889999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCC-CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG-GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG-GkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+++.++++++|||+||||+.|++ |+|+++|++.+|+.++++.+. +.+++||+|+++++|++|.
T Consensus 133 --------~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~g~~E~~v~ 200 (389)
T 3q2o_A 133 --------VQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN----AAECILEKWVPFEKEVSVI 200 (389)
T ss_dssp --------ESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH----HSCEEEEECCCCSEEEEEE
T ss_pred --------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecccCceEEEEE
Confidence 788999999999999999999999975 899999999999999998765 4589999999988999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
++.|.+|++..+...++ +++.+.......|+. ++++..+++.+.+.++++++||+|++++||++++ +|++||+|+||
T Consensus 201 ~~~~~~G~~~~~~~~e~-~~~~g~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg~~~viEiNp 277 (389)
T 3q2o_A 201 VIRSVSGETKVFPVAEN-IHVNNILHESIVPAR-ITEELSQKAIAYAKVLADELELVGTLAVEMFATA-DGEIYINELAP 277 (389)
T ss_dssp EEECTTCCEEECCCEEE-EEETTEEEEEEESCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEES
T ss_pred EEEcCCCCEEEecCeee-EEcCCceEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCCEEEEEeeC
Confidence 99998898877654432 233222222345765 8899999999999999999999999999999984 67899999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
|++.+.+++..++|+|+++.++++++|.|++.
T Consensus 278 R~~~s~~~~~~~~g~~~~~~~~r~~lg~~l~~ 309 (389)
T 3q2o_A 278 RPHNSGHYTQDACETSQFGQHIRAICNLPLGE 309 (389)
T ss_dssp SCCGGGTTHHHHBSSCHHHHHHHHHHTCCCCC
T ss_pred CCCCchhHHHHHcCCCHHHHHHHHHcCCCCCC
Confidence 99999888999999999999999999999863
No 41
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=382.94 Aligned_cols=383 Identities=16% Similarity=0.212 Sum_probs=280.0
Q ss_pred CccEEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
|.+||||+|+|.....+++.+ +++|++++ ++ .+ + .+... ..++ ...++. +|.|.+.|++
T Consensus 23 m~~~IlIlG~g~r~~al~~~~a~~~g~~~v---------~~-~~-~--~~~~~-~~~~-~~~~~~-----~~~d~~~l~~ 82 (452)
T 2qk4_A 23 MAARVLIIGSGGREHTLAWKLAQSHHVKQV---------LV-AP-G--NAGTA-CSEK-ISNTAI-----SISDHTALAQ 82 (452)
T ss_dssp CSEEEEEEECSHHHHHHHHHHTTCTTEEEE---------EE-EE-C--CGGGS-BSSS-EEECCC-----CSSCHHHHHH
T ss_pred cCcEEEEECCCHHHHHHHHHHHhcCCCCEE---------EE-EC-C--Chhhh-hhcc-cccccc-----CCCCHHHHHH
Confidence 567999999997555555554 55676643 22 22 1 12222 3344 323432 5678999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+|++.++|+|+|+.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 83 ~~~~~~~d~V~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 148 (452)
T 2qk4_A 83 FCKEKKIEFVVVGPEAPL-AAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKA------------- 148 (452)
T ss_dssp HHHHHTCCEEEECSSHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEE-------------
T ss_pred HHHHcCCCEEEECCcHHH-HHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE-------------
Confidence 999999999999844311 125778888899999999999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~ 280 (2304)
+.+.+++.++++++||| +||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++|
T Consensus 149 ----------~~~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G- 217 (452)
T 2qk4_A 149 ----------FTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG- 217 (452)
T ss_dssp ----------ESSHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-
T ss_pred ----------ECCHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-
Confidence 67889999999999999 9999999999999999999999999998875421 1468999999985
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHHH-HHHHHHHHHC-----Cc
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLE-QAARRLAKCV-----NY 342 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m~-e~A~rlakal-----Gy 342 (2304)
+|++|.++.|+. .++.+. .+++++++.+ ..|++.+++++.+++. +.+.++++++ +|
T Consensus 218 ~E~sv~~~~dG~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~ 291 (452)
T 2qk4_A 218 EEVSCLCFTDGK-TVAPMP-----PAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPY 291 (452)
T ss_dssp EEEEEEEEECSS-CEEECC-----CBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCC
T ss_pred CeEEEEEEECCC-EEEEcc-----eeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 899999998632 244432 2344444332 2577768888888886 6777777664 68
Q ss_pred eeeeEEEEEEEccCCcEEEEEeccCCCCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccc
Q 000086 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTS 421 (2304)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehp-vtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~ 421 (2304)
+|++++||++++ +| +||+|+|||+++... .....+|+|+++.+++++.|. ++.
T Consensus 292 ~G~~~ve~~~~~-~g-~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~----------------------- 345 (452)
T 2qk4_A 292 TGILYAGIMLTK-NG-PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLDGL-LCT----------------------- 345 (452)
T ss_dssp CEEEEEEEEEET-TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-GGG-----------------------
T ss_pred eeEEEEEEEEeC-CC-cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCc-----------------------
Confidence 899999999993 45 999999999997543 244567999999999999985 321
Q ss_pred ccccCCCccccCCCCCceE-EEEEEEccCCCCCCCCCCCC-ccccccccCCCcEEEEEeeeeCCcc----cccCCCccEE
Q 000086 422 VIATPFDFDQAESTRPKGH-CVAVRVTSEDPDDGFKPTSG-KVQELSFKSKPNVWAYFSVKSGGGI----HEFSDSQFGH 495 (2304)
Q Consensus 422 ~~~i~f~~~~~~~~~~~gh-ai~~RI~aEdp~~~f~P~~G-~i~~l~~~s~~~V~~~~~v~~G~~i----~~~~Ds~~g~ 495 (2304)
..+.| ..++ +++++++++++.. .|..| .|..+.....|+++++. .|..+ ......++||
T Consensus 346 -~~~~~---------~~~~~a~~~~l~~~g~~~--~~~~g~~i~~l~~~~~~~v~~~~---~G~~~~~~~~~~~~~rv~~ 410 (452)
T 2qk4_A 346 -SLPVW---------LENHTALTVVMASKGYPG--DYTKGVEITGFPEAQALGLEVFH---AGTALKNGKVVTHGGRVLA 410 (452)
T ss_dssp -GCCCB---------CTTCEEEEEEEECTTTTS--SCCCSCBCBCHHHHHHTTCEEEE---SSEEEETTEEEECSSEEEE
T ss_pred -cccee---------cCCCcEEEEEEECCCCCC--CCCCCCcccCccccCCCCcEEEE---CcEEeeCCeEEecCCeEEE
Confidence 00111 1244 8899999886533 46667 46555322335665432 33322 1233456899
Q ss_pred EEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 496 VFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 496 via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+++|+|+++|++++.++++.+.++|
T Consensus 411 v~~~g~~~~~a~~~~~~~~~~i~~~g 436 (452)
T 2qk4_A 411 VTAIRENLISALEEAKKGLAAIKFEG 436 (452)
T ss_dssp EEEEESSHHHHHHHHHHHHHHCBCTT
T ss_pred EEEecCCHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999998
No 42
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=5.4e-35 Score=363.87 Aligned_cols=294 Identities=15% Similarity=0.240 Sum_probs=246.7
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.+.++|||+|+|..+..++++++++|++++ +. |.++++++.+.||+++.. +|.|.+.+.+
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~vi-----------v~--d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~ 69 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVV-----------VL--DPSEDCPCRYVAHEFIQA-------KYDDEKALNQ 69 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESCTTCTTGGGSSEEEEC-------CTTCHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--ECCCCChhhhhCCEEEEC-------CCCCHHHHHH
Confidence 456899999999999999999999999985 33 455678888999998875 4688999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
++++ +|+|.++++. ........+++.+ .++|++++++.+.||..++++++++|||+|+|..
T Consensus 70 ~~~~--~dvi~~~~E~--~~~~~l~~l~~~~--~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~------------- 130 (377)
T 3orq_A 70 LGQK--CDVITYEFEN--ISAQQLKLLCEKY--NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFIS------------- 130 (377)
T ss_dssp HHHH--CSEEEESSTT--SCHHHHHHHHHHS--CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEE-------------
T ss_pred HHHh--CCcceecccc--cCHHHHHHHhhhc--CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE-------------
Confidence 9987 6888766422 2222456666665 5779999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|+ ||+|+++|++.+|+.++++.+. ..++++|+|+++.+|++
T Consensus 131 ----------~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~i~g~~E~s 196 (377)
T 3orq_A 131 ----------VKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE----TSECVAEKYLNIKKEVS 196 (377)
T ss_dssp ----------ECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT----TSCEEEEECCCEEEEEE
T ss_pred ----------ECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCcEEEEccCCCCEEEE
Confidence 67778888999999999999999998 9999999999999999998875 36899999999889999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
|.++.+..|++..+...++ .++.+.......|+. +++ .+++.+.|.++++++||+|+++|||++++ +|++||+|+
T Consensus 197 v~~~~~~~g~~~~~~~~e~-~~~~g~~~~~~~Pa~-l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~v~Ei 271 (377)
T 3orq_A 197 LTVTRGNNNQITFFPLQEN-EHRNQILFKTIVPAR-IDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NNQLYVNEI 271 (377)
T ss_dssp EEEEECGGGCEEECCCEEE-EEETTEEEEEEESCS-SCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEET-TCCEEEEEE
T ss_pred EEEEEeCCCCEEEECCEeE-EEECCEEEEEECCCC-CCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEe
Confidence 9999887788877644332 222222223346775 555 88999999999999999999999999994 688999999
Q ss_pred ccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 365 NpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
|||++++..+|...+++++++.+++.++|.|++
T Consensus 272 npR~~~sg~~t~~~~~~s~f~~~~ra~~G~pl~ 304 (377)
T 3orq_A 272 APRPHNSGHYSIEACDYSQFDTHILAVTGQSLP 304 (377)
T ss_dssp ESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCC
T ss_pred eCCcCCCCcEeehhcCCCHHHHHHHHHcCCCCC
Confidence 999999888887889999999999999999986
No 43
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=5.1e-35 Score=368.08 Aligned_cols=369 Identities=17% Similarity=0.125 Sum_probs=273.3
Q ss_pred ccEEEEECchHHHHHHH-HHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFI-RSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iI-rsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
.+||||+|+|..-..++ ..++++| +++ +++. .+....+|+. + |.+.|+++
T Consensus 15 ~~~vlviG~Ggr~~a~a~~~a~~~g-~v~-----------~~~~-----np~~~~~d~~--i----------d~~~l~~~ 65 (412)
T 1vkz_A 15 AVRVHILGSGGREHAIGWAFAKQGY-EVH-----------FYPG-----NAGTKRDGTN--H----------PYEGEKTL 65 (412)
T ss_dssp -CEEEEEECSHHHHHHHHHHHHTTC-EEE-----------EEEC-----CTTGGGTSEE--C----------CCCTHHHH
T ss_pred cCEEEEECCCHHHHHHHHHHHhCCC-CEE-----------EECC-----Chhhhccccc--C----------CHHHHHHH
Confidence 45899999885444433 3457777 664 3322 3456678876 2 35789999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|++.++|+|++| +|++.++..++..+. ++||++++++.++||..++++++++|||+|+|..
T Consensus 66 ~~~~~~d~V~~~----~E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 126 (412)
T 1vkz_A 66 KAIPEEDIVIPG----SEEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEV-------------- 126 (412)
T ss_dssp HTSCSSCEECCS----SGGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE--------------
T ss_pred HHHcCCCEEEEC----CcHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE--------------
Confidence 999999999996 455556677777777 8899999999999999999999999999999865
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
+++.+++.++++++|||+||||..|+||+|+++|+|.+|+.++++++.... ...+++||+|++ ++|
T Consensus 127 ---------~~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~-G~E 196 (412)
T 1vkz_A 127 ---------AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA-GNE 196 (412)
T ss_dssp ---------ESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC-SEE
T ss_pred ---------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc-CcE
Confidence 788999999999999999999999999999999999999999999886532 123899999998 589
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccc---e-----EEEeCCCCCCCHHHHHHHHHHHHHHHHHC-----CceeeeEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQ---K-----IIEEGPITVAPLETVKKLEQAARRLAKCV-----NYVGAATVE 349 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~q---K-----iieeaPa~~l~~e~~~~m~e~A~rlakal-----Gy~Ga~tVE 349 (2304)
++|++++|+ +.+......+..++.+. + .....|++ +++++.+++.+.+.++++++ +|+|++++|
T Consensus 197 ~sv~~~~dg--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve 273 (412)
T 1vkz_A 197 LSAMAVVNG--RNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLG 273 (412)
T ss_dssp EEEEEEEET--TEEEECCCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred EEEEEEECC--CEEEEeeeeEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999975 43333332233333221 1 12456888 89999999999999999999 899999999
Q ss_pred EEEEccCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCC
Q 000086 350 YLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFD 428 (2304)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~ 428 (2304)
|++++ +| +||+|+|||+++. |+.++..+|+|+.+.+++++.|. ++.+ .|
T Consensus 274 ~~~~~-~g-~~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~~g~-l~~~--------------------------~~- 323 (412)
T 1vkz_A 274 LMLHD-GD-PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGG-KMEP--------------------------VE- 323 (412)
T ss_dssp EEEET-TE-EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHTS-CCCC--------------------------CC-
T ss_pred EEEEC-CC-cEEEEEecCCCCCcceeehhhcCCCHHHHHHHHhcCC-Cccc--------------------------cc-
Confidence 99994 44 9999999999965 55677779999999999999884 3210 11
Q ss_pred ccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCCccEEEEEEeCCHHHHH
Q 000086 429 FDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHVFAFGESRALAI 507 (2304)
Q Consensus 429 ~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~via~G~~reeA~ 507 (2304)
..++++ +++.++++. .+.|.+|.+..+..+. .++.+ +.. .++.+.. ..+++|||+++|+|+++|+
T Consensus 324 --------~~~~a~-~~~l~~~~~-~~~~~~g~~i~l~~~~--~v~~~-g~~~~~~~~~~-~~~~vg~v~~~g~~~~ea~ 389 (412)
T 1vkz_A 324 --------PRGFAV-DVVLAARGY-PDAPEKGKEITLPEEG--LIFFA-GVAEKDGKLVT-NGGRVLHCMGTGETKEEAR 389 (412)
T ss_dssp --------CCSEEE-EEEEECTTT-TTSCCCCCBCBCCSSC--CEEES-SEEEETTEEEE-CSSEEEEEEEEESSHHHHH
T ss_pred --------cCCeEE-EEEEecCCC-CCCCCCCCEeeeCCCC--cEEEC-cccccCCeEEe-CCCcEEEEEEeCCCHHHHH
Confidence 124665 445554321 2346677643333321 34321 221 2232333 3567999999999999999
Q ss_pred HHHHHhhcceEEec
Q 000086 508 ANMVLGLKEIQIRG 521 (2304)
Q Consensus 508 ~~l~~AL~el~I~G 521 (2304)
+++.++++.+.++|
T Consensus 390 ~~~~~~~~~i~~~g 403 (412)
T 1vkz_A 390 RKAYELAEKVHFEG 403 (412)
T ss_dssp HHHHHHHHHCBCTT
T ss_pred HHHHHHhcceeeCC
Confidence 99999999999998
No 44
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=100.00 E-value=4.9e-34 Score=363.09 Aligned_cols=376 Identities=19% Similarity=0.233 Sum_probs=270.4
Q ss_pred ccEEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
.+||||+|+|.....+++++ +++|++++ + +.+. +......+| . ++. ++.|.+.|+++
T Consensus 21 ~~~iliiG~g~r~~a~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~~-----~~~d~~~l~~~ 78 (451)
T 2yrx_A 21 HMNVLVIGRGGREHAIAWKAAQSPLVGKL---------Y-VAPG----NPGIADVAE-L--VHI-----DELDIEALVQF 78 (451)
T ss_dssp SEEEEEEECSHHHHHHHHHHHTCTTEEEE---------E-EEEC----CTTGGGTSE-E--CCC-----CTTCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEE---------E-EECC----ChhhhhhCc-e--ecc-----CCCCHHHHHHH
Confidence 36899999996555555544 55777653 2 2222 223344455 3 322 45789999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|++.++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 79 ~~~~~~d~vi~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 143 (451)
T 2yrx_A 79 AKQQAIDLTIVGPEAPL-ASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAA-------------- 143 (451)
T ss_dssp HHHTTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE--------------
T ss_pred HHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEE--------------
Confidence 99999999999854321 134678888999999999999999999999999999999999999865
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|
T Consensus 144 ---------~~~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E 213 (451)
T 2yrx_A 144 ---------FTSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EE 213 (451)
T ss_dssp ---------ESCHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EE
T ss_pred ---------ECCHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cE
Confidence 778999999999999999999999999999999999999999998876431 2468999999985 89
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHH-HHHHHHHHHHC-----Ccee
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVG 344 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m-~e~A~rlakal-----Gy~G 344 (2304)
++|.++.| |+.+... ...++++++.+ ..|++.+++++.+++ .+.+.++++++ +|.|
T Consensus 214 ~sv~~~~d--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G 287 (451)
T 2yrx_A 214 FSFMAFVN--GEKVYPL----AIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLG 287 (451)
T ss_dssp EEEEEEEE--TTEEEEC----CCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred EEEEEEEc--CCEEEEe----eeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 99999986 4444332 22344444432 257766888888888 66777777754 7899
Q ss_pred eeEEEEEEEccCCcEEEEEeccCCCCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccc
Q 000086 345 AATVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVI 423 (2304)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~ 423 (2304)
++++||++++ +| +||+|+|||+++.. ...+..+|+|+++++++++.|.+.+ +
T Consensus 288 ~~~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~~~~-~------------------------ 340 (451)
T 2yrx_A 288 VLYAGLMATA-NG-PKVIEFNARFGDPEAQVVLPRLKTDLVEAVLAVMDGKELE-L------------------------ 340 (451)
T ss_dssp EEEEEEEEET-TE-EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHTTCCCC-C------------------------
T ss_pred EEEEEEEEeC-CC-cEEEEEecCCCCcHHHHHHHHcCCCHHHHHHHHhcCCCCC-c------------------------
Confidence 9999999993 44 99999999998764 3445578999999999999996431 0
Q ss_pred ccCCCccccCCCCCceEEEEEEEc----cCCCCCCCCCCCCccccccccCCCcEEEEE-eee-eCCcccccCCCccEEEE
Q 000086 424 ATPFDFDQAESTRPKGHCVAVRVT----SEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHVF 497 (2304)
Q Consensus 424 ~i~f~~~~~~~~~~~ghai~~RI~----aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~vi 497 (2304)
.+ ..++++..++. +++|..++. ..| +.++ . |++.++. +.. .++. ......++|||+
T Consensus 341 --~~---------~~~~~~~~~l~~~g~p~~~~~g~~-i~~-~~~~---~-~~~~v~~~G~~~~~~~-~~~~~~rvg~v~ 402 (451)
T 2yrx_A 341 --EW---------TDEAVLGVVLAAKGYPGAYERGAE-IRG-LDRI---S-PDALLFHAGTKREGGA-WYTNGGRVLLLA 402 (451)
T ss_dssp --CB---------CSSEEEEEEEEETTTTSSCCCCCE-EBC-GGGS---C-TTSEEEESSEEEETTE-EEECSSEEEEEE
T ss_pred --cc---------cCCceEEEEEecCCcCCCCCCCCc-CcC-cccc---C-CCCEEEeCcccccCCe-EEcCCCeEEEEE
Confidence 01 01345555553 334444431 122 2222 2 5554332 111 1111 122346799999
Q ss_pred EEeCCHHHHHHHHHHhhcceEEec
Q 000086 498 AFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 498 a~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+.|+|+++|++++.++++.+.++|
T Consensus 403 ~~g~~~~ea~~~~~~~~~~i~~~~ 426 (451)
T 2yrx_A 403 AKGETLAKAKEKAYEQLAAIDCDG 426 (451)
T ss_dssp EEESSHHHHHHHHHHHHTTCBCTT
T ss_pred EEeCCHHHHHHHHHHHhhccccCC
Confidence 999999999999999999999998
No 45
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=100.00 E-value=1.9e-33 Score=355.82 Aligned_cols=385 Identities=18% Similarity=0.179 Sum_probs=283.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
+.||||+|+|.-...+++++++.+. +..+. +.+ .|+.....++ ...++ -++.|.+.|+++|
T Consensus 3 ~mkvlviG~ggre~ala~~l~~s~~--------v~~v~-~~p----gn~g~~~~~~-~~~~~-----~~~~d~~~l~~~a 63 (431)
T 3mjf_A 3 AMNILIIGNGGREHALGWKAAQSPL--------ADKIY-VAP----GNAGTALEPT-LENVD-----IAATDIAGLLAFA 63 (431)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTT--------EEEEE-EEE----CCHHHHHCTT-CEECC-----CCTTCHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCC--------CCEEE-EEC----CCHHHhhhcc-cceec-----CCcCCHHHHHHHH
Confidence 4689999999877788888887642 11122 232 2333333333 21122 1457899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+++++|+|++|.+.... ..+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 64 ~~~~id~vv~g~e~~l~-~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~--------------- 127 (431)
T 3mjf_A 64 QSHDIGLTIVGPEAPLV-IGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQN--------------- 127 (431)
T ss_dssp HHTTEEEEEECSHHHHH-TTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEE---------------
T ss_pred HHhCcCEEEECCchHHH-HHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEe---------------
Confidence 99999999998553221 34788999999999999999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~rei 283 (2304)
+++.+++.++++++|||+||||..|+||+||++++|.+|+.++++.+... ..+.+++||+|++| +|+
T Consensus 128 --------~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~ 198 (431)
T 3mjf_A 128 --------FTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEA 198 (431)
T ss_dssp --------ESCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEE
T ss_pred --------eCCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEE
Confidence 78899999999999999999999999999999999999999999987632 22468999999986 899
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHHHHH----HHHHHHHCC--ceee
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLEQA----ARRLAKCVN--YVGA 345 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m~e~----A~rlakalG--y~Ga 345 (2304)
+|.++.|+. +++.+.. .++|+++.+ ..|++.++++..+++.+. +.+.++++| |+|+
T Consensus 199 sv~~~~dg~-~~~~~~~-----~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~ 272 (431)
T 3mjf_A 199 SFIVMVDGE-NVLPMAT-----SQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGF 272 (431)
T ss_dssp EEEEEEESS-CEEECCC-----BEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEEcCC-EEEEEEe-----eEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999874 6665432 344555533 458877899999888876 667776655 5899
Q ss_pred eEEEEEEEccCCcEEEEEeccCCCCCcceeh---hhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 346 ATVEYLYSMETGEYYFLELNPRLQVEHPVTE---WIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 346 ~tVEfl~d~~~g~~yfLEINpRlqgehpvtE---~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
+++||++++ +|++||||+|||++ +|.++ ..+|+||++++++++.|....
T Consensus 273 ~~ve~~~~~-~g~~~viEiN~R~G--~~~~~~i~~~~g~dl~~~~~~~~~G~l~~------------------------- 324 (431)
T 3mjf_A 273 LYAGLMISA-DGQPKVIEFNCRFG--DPETQPIMLRMRSDLVELCLAGTQGKLNE------------------------- 324 (431)
T ss_dssp EEEEEEECT-TSCEEEEEECGGGS--TTTHHHHHHHBCSCHHHHHHHHHTTCGGG-------------------------
T ss_pred EEEEEEEeC-CCCeEEEEEecCCC--CcHHHHHHHHHCCCHHHHHHHHHcCCCCC-------------------------
Confidence 999999994 56699999999997 55554 789999999999999997421
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeee-CC-cccccCCCccEEEEEE
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKS-GG-GIHEFSDSQFGHVFAF 499 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~~-G~-~i~~~~Ds~~g~via~ 499 (2304)
..+.|+ +....+.+++..-|++++..+. .|..+.-...+++.++. ++.. ++ .+ ....+++++|++.
T Consensus 325 ~~~~~~-----~~~a~~vv~a~~gyp~~~~~g~-----~i~~~~~~~~~~~~~~~ag~~~~~~~~~-~~~ggRv~~v~~~ 393 (431)
T 3mjf_A 325 KTSDWD-----ERPSLGVVLAAGGYPADYRQGD-----VIHGLPQQEVKDGKVFHAGTKLNGNHEV-VTNGGRVLCVTAL 393 (431)
T ss_dssp CCCCBC-----SSCEEEEEEEETTTTSCCCCCC-----BCBCCCSSCBTTEEEEESSEEECTTSCE-EECSSEEEEEEEE
T ss_pred CCcccc-----CCcEEEEEecCCCcCccCCCCC-----EeeCCccccCCCcEEEEeeeEecCCCEE-EecCCeEEEEEEe
Confidence 112221 1112233334444555444332 22222211115665442 2322 22 33 2346789999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000086 500 GESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+|.++|+++++.+++.+++.|
T Consensus 394 g~~~~~A~~~a~~~~~~i~~~~ 415 (431)
T 3mjf_A 394 GETVAQAQQYAYQLAEGIQWEG 415 (431)
T ss_dssp CSSHHHHHHHHHHHHTTCBCTT
T ss_pred cCCHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999998
No 46
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=100.00 E-value=4e-34 Score=360.44 Aligned_cols=374 Identities=19% Similarity=0.226 Sum_probs=274.1
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+|.....+++++ +++|++++ + +.+. +....+.+| . ++. ++.|.+.|+++|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~~-----~~~d~~~l~~~~~ 59 (422)
T 2xcl_A 2 NVLIIGKGGREHTLAWKAAQSSLVENV---------F-AAPG----NDGMAASAQ-L--VNI-----EESDHAGLVSFAK 59 (422)
T ss_dssp EEEEEECSHHHHHHHHHHTTCTTCSEE---------E-EEEC----CGGGTTTCE-E--CCC-----CTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE---------E-EeCC----Chhhhhhcc-c--ccc-----CcCCHHHHHHHHH
Confidence 799999996666666655 45787764 2 2222 233345566 3 332 4678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (422)
T 2xcl_A 60 QNQVGLTIVGPEVPL-IEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYET---------------- 122 (422)
T ss_dssp HTTEEEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEE----------------
T ss_pred HcCCCEEEECCcHHH-HHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999999854321 124678888999999999999999999999999999999999999865
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~s 194 (422)
T 2xcl_A 123 -------FTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFS 194 (422)
T ss_dssp -------ESCHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEE
T ss_pred -------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEE
Confidence 778999999999999999999999999999999999999999999886421 1368999999985 8999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHHH-HHHHHHHHHC-----Cceeee
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLE-QAARRLAKCV-----NYVGAA 346 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m~-e~A~rlakal-----Gy~Ga~ 346 (2304)
|.++.|+ +.+... ...++|+++.+ ..|++.+++++.+++. +.+.++++++ +|.|++
T Consensus 195 v~~~~dG--~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (422)
T 2xcl_A 195 LMAFVKG--EKVYPM----VIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVL 268 (422)
T ss_dssp EEEEEET--TEEEEC----CCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEcC--CEEEec----ceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999874 443322 22333444332 3577668888888884 4777777664 789999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2304)
++||++++ +| +||+|+|||+++.. ...+..+|+|+.+.+++++.|.... +
T Consensus 269 ~vd~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~l~~-~-------------------------- 319 (422)
T 2xcl_A 269 YAGLMLTE-NG-SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDKEVD-L-------------------------- 319 (422)
T ss_dssp EEEEEEET-TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTCCCC-C--------------------------
T ss_pred EeeEEEeC-CC-cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcCCcCc-c--------------------------
Confidence 99999993 44 99999999998764 3455679999999999999985321 0
Q ss_pred CCCccccCCCCCceEEEEEEEccC----CCCCCCCCCCCccccccccCCCcEEEEE-eee-eCCcccccCCCccEEEEEE
Q 000086 426 PFDFDQAESTRPKGHCVAVRVTSE----DPDDGFKPTSGKVQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHVFAF 499 (2304)
Q Consensus 426 ~f~~~~~~~~~~~ghai~~RI~aE----dp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~via~ 499 (2304)
.+ ..++++.+++.++ +|..++ +..| +.++ . |++.++. +.. .++...... .++|||+++
T Consensus 320 ~~---------~~~~~~~~~~~~~g~~~~~~~g~-~i~~-~~~~---~-~~~~~~~~g~~~~~~~~~~~~-~r~~~v~~~ 383 (422)
T 2xcl_A 320 RW---------KDTAAVSVVLASEGYPESYAKGT-PIGS-LAAE---T-EQVVVFHAGTKAEGGEFVTNG-GRVANVTAF 383 (422)
T ss_dssp CB---------CSCEEEEEEEEETTTTSCCCSCC-BCCC-CCCC---S-SSEEEEESSEEECSSSEEECS-SEEEEEEEE
T ss_pred cc---------cCCceEEEEEECCCCCCCCCCCC-cccC-cccC---C-CCcEEEEeeeEeeCCEEEeCC-CceEEEEEE
Confidence 01 0134555555443 333333 2223 2222 2 5665432 111 112333333 458999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000086 500 GESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+|+++|+++++++++.+.++|
T Consensus 384 g~~~~~a~~~~~~~~~~i~~~g 405 (422)
T 2xcl_A 384 DETFEAARDRVYKAVDEIFKPG 405 (422)
T ss_dssp ESSHHHHHHHHHHHHHHHCCTT
T ss_pred eCCHHHHHHHHHHHHhcceeCC
Confidence 9999999999999999999988
No 47
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=100.00 E-value=3.2e-33 Score=354.69 Aligned_cols=384 Identities=16% Similarity=0.145 Sum_probs=285.7
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+..||||+|+|.-...+++++++.+. +..+.+ .+ ..+....+++.+.+ ++.|.+.|+++
T Consensus 20 ~~m~ilvlG~ggre~ala~~l~~s~~--------v~~v~~-~p-----gn~g~~~~~~~~~i-------~~~d~~~l~~~ 78 (442)
T 3lp8_A 20 GSMNVLVIGSGGREHSMLHHIRKSTL--------LNKLFI-AP-----GREGMSGLADIIDI-------DINSTIEVIQV 78 (442)
T ss_dssp CCEEEEEEECSHHHHHHHHHHTTCTT--------EEEEEE-EE-----CCGGGTTTSEECCC-------CTTCHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC--------CCEEEE-EC-----CChHHhhccceeec-------CcCCHHHHHHH
Confidence 34589999999888888888877632 222222 22 22444456665544 56789999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|++|.+.... ..+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 79 a~~~~id~vv~g~E~~l~-~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~-------------- 143 (442)
T 3lp8_A 79 CKKEKIELVVIGPETPLM-NGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGY-------------- 143 (442)
T ss_dssp HHHTTCCEEEECSHHHHH-TTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEE--------------
T ss_pred HHHhCCCEEEECCcHHHH-HHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEE--------------
Confidence 999999999998433211 24678899999999999999999999999999999999999999865
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~re 282 (2304)
+++.+++.++++++|||+||||..|+||+|+++++|.+|+.++++++... ..+.+++||||++| +|
T Consensus 144 ---------~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E 213 (442)
T 3lp8_A 144 ---------FVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KE 213 (442)
T ss_dssp ---------ESSHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EE
T ss_pred ---------ECCHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cE
Confidence 78899999999999999999999999999999999999999999988743 11368999999985 89
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceE------------EEeCCCCCCCHHHHHHHHHH----HHHHHHHCCc--ee
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKLEQA----ARRLAKCVNY--VG 344 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKi------------ieeaPa~~l~~e~~~~m~e~----A~rlakalGy--~G 344 (2304)
++|.++.|+. +++.+.. .++|++. ....|++.++++..+++.+. +.++++++|+ +|
T Consensus 214 ~sv~~~~dg~-~~~~~~~-----~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G 287 (442)
T 3lp8_A 214 ISFFTLVDGS-NPVILGV-----AQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRG 287 (442)
T ss_dssp EEEEEEEESS-CEEEEEE-----EEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred EEEEEEECCC-eEEEeEE-----eEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 9999999864 4544321 2233333 23458877899999999887 8888888877 89
Q ss_pred eeEEEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccc
Q 000086 345 AATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVI 423 (2304)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~ 423 (2304)
++++||+++ .+++||||+|||+++ +++.+...+|.|+.+++++++.|.....
T Consensus 288 ~~~ve~~~~--~~g~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~l~~~------------------------- 340 (442)
T 3lp8_A 288 LLFAGIIIK--KNEPKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKLGNE------------------------- 340 (442)
T ss_dssp EEEEEEEEE--TTEEEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTCCSSC-------------------------
T ss_pred EEEEEEEEe--CCCeEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCCCCCC-------------------------
Confidence 999999999 345999999999995 5777777899999999999999974221
Q ss_pred ccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCC-cccccc-ccCCCcEEEEE-eeee-CCcccccCCCccEEEEEE
Q 000086 424 ATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG-KVQELS-FKSKPNVWAYF-SVKS-GGGIHEFSDSQFGHVFAF 499 (2304)
Q Consensus 424 ~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G-~i~~l~-~~s~~~V~~~~-~v~~-G~~i~~~~Ds~~g~via~ 499 (2304)
.+.|. .++++.+.+.+...- ..|..| .|..+. ....+++.++. +... .+.+ ....+++++|++.
T Consensus 341 ~~~~~---------~~~a~~vv~a~~gyp--~~~~~g~~i~g~~~~~~~~~~~~~~ag~~~~~~~~-~~~ggRv~~v~~~ 408 (442)
T 3lp8_A 341 SVELS---------KKAALCVVVASRGYP--GEYKKNSIINGIENIEKLPNVQLLHAGTRREGNNW-VSDSGRVINVVAQ 408 (442)
T ss_dssp CCCBC---------SCEEEEEEEEETTTT--SSCCSSCEEBSHHHHHTCSSEEEEESSEEEETTEE-EECSSEEEEEEEE
T ss_pred Cceec---------cCcEEEEEEccCCCC--CCCCCCCEeeCCcccccCCCcEEEEeeeeccCCeE-EecCCeEEEEEEe
Confidence 12221 133443333332200 012233 233332 23345665442 2222 2222 2345779999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000086 500 GESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+|.++|+++++.+++.+++.|
T Consensus 409 g~~~~~A~~~a~~~~~~i~~~~ 430 (442)
T 3lp8_A 409 GENLASAKHQAYAALDLLDWPD 430 (442)
T ss_dssp ESSHHHHHHHHHHHHTTCBCTT
T ss_pred cCCHHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999998
No 48
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=100.00 E-value=3.8e-36 Score=357.58 Aligned_cols=255 Identities=17% Similarity=0.304 Sum_probs=201.0
Q ss_pred cccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCcchhHH--HHHHH-HHHHhHhhhCCCCCCCCcCcccccccccc
Q 000086 1527 CYDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSCEKCYL--QAFET-ALEQSWASQFPNMRPKDKALLKVTELKFA 1602 (2304)
Q Consensus 1527 ~yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~el~~~ 1602 (2304)
..++|+ +||.|||+|. .+|.+++..|+.+||.|+|...+. +.++. .+.++|. +...+....++|.|+
T Consensus 22 ~~~~~~--~l~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~r~~arerI~~L~D~gsF~-------El~~~~~~~~~l~f~ 92 (285)
T 2f9i_B 22 NNDVPA--GIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFT-------EFDKGMTSANPLDFP 92 (285)
T ss_dssp ----CC--SSEEECTTTCCEEEHHHHHHTTTBCTTTCCBCCCCHHHHHHHTSCTTCCE-------EESTTCEECCTTCCT
T ss_pred ccCCCh--HHHHhhHhhCCccchhhhHHhcCcCCCCCCCCCCCHHHHHHHHccCCCcE-------EECCCcCcCCccccc
Confidence 347899 9999999987 777778899999999999932222 11111 1122222 222333333444443
Q ss_pred CCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEE
Q 000086 1603 DDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIY 1682 (2304)
Q Consensus 1603 ~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~ 1682 (2304)
.|..+|.+.++.+|.+++ ||++..++ +|++|+|++||++|++||+|+..++|+.|++++|.+.++|+|+
T Consensus 93 ----~y~~~l~~~~~~t~~~~a-vVtG~g~I------~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~ 161 (285)
T 2f9i_B 93 ----SYLEKIEKDQQKTGLKEA-VVTGTAQL------DGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFIL 161 (285)
T ss_dssp ----THHHHHHHHHHHHCCSSS-EEEEEEEE------TTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ----chhHHHHHHhhccCCCCe-EEEEEEEE------CCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 244578777777777665 99999887 9999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccc
Q 000086 1683 LAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVEN 1762 (2304)
Q Consensus 1683 l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~ 1762 (2304)
|.+||||||| |++.+||||+ + +...+.+++ .
T Consensus 162 l~dsgGar~q--EGi~sl~q~a--------k-------i~~~l~~~s----------~---------------------- 192 (285)
T 2f9i_B 162 FSASGGARMQ--EGIISLMQMG--------K-------TSVSLKRHS----------D---------------------- 192 (285)
T ss_dssp EEEECSCCGG--GHHHHHHHHH--------H-------HHHHHHHHH----------H----------------------
T ss_pred EEeCCCcchh--hhhhhHhHHH--------H-------HHHHHHHHH----------c----------------------
Confidence 9999999998 9999999887 1 111122211 0
Q ss_pred cccccccccccccccccceEEEEEcCcccchhhh-hhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcceee
Q 000086 1763 LTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIM 1841 (2304)
Q Consensus 1763 l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAy-l~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~ 1841 (2304)
..+|+||++||+|+||++| +++++|+++|.+++.|+|+||+++++++|+++ ++++|++++|
T Consensus 193 ---------------~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~vi~~~~~~~~---~e~~~~Ae~~ 254 (285)
T 2f9i_B 193 ---------------AGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKL---PDDFQTAEFL 254 (285)
T ss_dssp ---------------TTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHHHH
T ss_pred ---------------CCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHHHHHHhcccc---hHhHhhHHHH
Confidence 1279999999999999755 48999999999999999999999999999998 7999999999
Q ss_pred cccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1842 ATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1842 ~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
..+|++|.+++++ +..+.++++|+|+.
T Consensus 255 ~~~G~iD~Iv~~~-e~r~~l~~~L~~l~ 281 (285)
T 2f9i_B 255 LEHGQLDKVVHRN-DMRQTLSEILKIHQ 281 (285)
T ss_dssp HHTTCCSEECCGG-GHHHHHHHHHHHTC
T ss_pred HhcCCccEEeChH-HHHHHHHHHHHHhh
Confidence 9999999999755 99999999999984
No 49
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=2e-32 Score=379.55 Aligned_cols=304 Identities=18% Similarity=0.279 Sum_probs=241.3
Q ss_pred CccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
..+||||+|+|.. +++++++++++||+++ .+..+.+..+.....||+.+..|
T Consensus 558 ~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi-----------~v~~np~~~s~~~~~ad~~~~~p------ 620 (1073)
T 1a9x_A 558 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETI-----------MVNCNPETVSTDYDTSDRLYFEP------ 620 (1073)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEE-----------EECCCTTSSTTSTTSSSEEECCC------
T ss_pred cCcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEE-----------EEecCCcccccccccccEEEecc------
Confidence 5679999999874 5788999999999985 33333333334456788877532
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
.+.+.++++++.+++|+|++++|.... ..++..|++.|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 621 --~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~--- 694 (1073)
T 1a9x_A 621 --VTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANAT--- 694 (1073)
T ss_dssp --CSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEE---
T ss_pred --chhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceE---
Confidence 458999999999999999999875332 25788999999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+.+.+++.++++++||||||||+.|+||+||++|+|.+|+.++++.+....+..+++||+
T Consensus 695 --------------------~~s~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEe 754 (1073)
T 1a9x_A 695 --------------------VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 754 (1073)
T ss_dssp --------------------CCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEB
T ss_pred --------------------ECCHHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 789999999999999999999999999999999999999999999876554567999999
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccc--c-ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--H-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~-qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
|++|.+|++|++++|+.+ ++.....+ .+.+. | .......|+..++++..+++.+.+.++++++|++|.+++||++
T Consensus 755 fI~g~~E~~V~~l~d~~~-v~~~~i~e-~~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v 832 (1073)
T 1a9x_A 755 FLDDAVEVDVDAICDGEM-VLIGGIME-HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV 832 (1073)
T ss_dssp CCTTCEEEEEEEEECSSC-EEEEEEEE-ESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEECCe-EEEEeeEE-EEeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE
Confidence 999877999999998754 33221111 11111 1 1112334776689999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+ ++++||||+|||+++++|+++.++|+|++++++++++|.+++
T Consensus 833 ~--~~~~~viEvNpR~~~~~~~~~~~tGi~l~~~~~~~~~G~~l~ 875 (1073)
T 1a9x_A 833 K--NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLA 875 (1073)
T ss_dssp C--SSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHHHTTCCHH
T ss_pred E--CCeEEEEEEECCCccHHHHHHHHHCcCHHHHHHHHHcCCCch
Confidence 7 789999999999999999999999999999999999999875
No 50
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=100.00 E-value=1.5e-33 Score=338.56 Aligned_cols=258 Identities=19% Similarity=0.245 Sum_probs=196.7
Q ss_pred cccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCcc-----hhHHHHHHHHHHHhHhhhCCCCCCCCcCcccccccc
Q 000086 1527 CYDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSCE-----KCYLQAFETALEQSWASQFPNMRPKDKALLKVTELK 1600 (2304)
Q Consensus 1527 ~yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 1600 (2304)
..++|+ +||.|||+|. .+|.+++..|+++||.|+|. ..|..++ .+.++| .+...++...++|.
T Consensus 16 ~~~~~~--~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~~arerI~~L--~D~gsF-------~E~~~~~~~~~~~~ 84 (304)
T 2f9y_B 16 KASIPE--GVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSL--LDEGSL-------VELGSELEPKDVLK 84 (304)
T ss_dssp ---------CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHH--SCSSCC-------EECSCSCCCCCSSC
T ss_pred cCCCCH--HHHHhhhhccchhhHHHHHHHhCCCCCCCCCCCCCHHHHHHHH--CCCCcE-------EEECCccccCCccc
Confidence 347899 9999999987 78888899999999999992 2333322 122223 33334444455666
Q ss_pred ccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCE
Q 000086 1601 FADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPL 1680 (2304)
Q Consensus 1601 ~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~ 1680 (2304)
|.+ +..|..+|.+.++++|.+++ ||++..++ +|++|+|++||+||+|||||+...+|+.+++++|.+.++|+
T Consensus 85 f~d-~~~y~~~l~~~~~~t~~~~a-vvtG~g~i------~G~~V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~~~Pv 156 (304)
T 2f9y_B 85 FRD-SKKYKDRLASAQKETGEKDA-LVVMKGTL------YGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPL 156 (304)
T ss_dssp CSS-GGGTC------CCSSCCSSS-EEEEECEE------TTEECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCCE
T ss_pred ccc-ccChHHHHHHHHhccCCCCc-EEEEEEEE------CCEEEEEEEEcCccccCCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 644 44577789999988888765 99999876 99999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccc
Q 000086 1681 IYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGV 1760 (2304)
Q Consensus 1681 I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gv 1760 (2304)
|+|.++|||||+ |++.+++|++ .++. .+.++
T Consensus 157 I~l~~sGGarlq--eg~~~l~~~~------------~i~~---al~~~-------------------------------- 187 (304)
T 2f9y_B 157 ICFSASGGARMQ--EALMSLMQMA------------KTSA---ALAKM-------------------------------- 187 (304)
T ss_dssp EEEEEESSBCGG--GTHHHHHHHH------------HHHH---HHHHH--------------------------------
T ss_pred EEEECCCCcCHH--HHHHHHHHHH------------HHHH---HHHHH--------------------------------
Confidence 999999999998 7765554433 1110 00000
Q ss_pred cccccccccccccccccccceEEEEEcCcccchh-hhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcce
Q 000086 1761 ENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIG-AYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPK 1839 (2304)
Q Consensus 1761 e~l~~SG~iag~~s~ay~~iptis~vtg~t~G~g-Ayl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~ 1839 (2304)
+ -..+|+|++|+|+|+||| ++++++||++||.+++.|+++||+++.+++|+++ ++++||++
T Consensus 188 ---~------------~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~Gp~~i~~~ig~~l---~~~~~~Ae 249 (304)
T 2f9y_B 188 ---Q------------ERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PPGFQRSE 249 (304)
T ss_dssp ---H------------HTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHH
T ss_pred ---h------------cCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEeecHHHHHHHhCccC---CcccCCHH
Confidence 0 013799999999999999 6668999999999999999999999999999987 58999999
Q ss_pred eecccCceEEEecCcHHHHHHHHHHHhcCCCC
Q 000086 1840 IMATNGVVHLTVSDDLEGISAILKWLSYVPPH 1871 (2304)
Q Consensus 1840 i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~ 1871 (2304)
.+..+|++|.++++ .+..+.++++|+|+|..
T Consensus 250 ~~~~~Glvd~Vv~~-~el~~~l~~ll~~l~~~ 280 (304)
T 2f9y_B 250 FLIEKGAIDMIVRR-PEMRLKLASILAKLMNL 280 (304)
T ss_dssp HHGGGTCCSEECCH-HHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCccEEeCc-HHHHHHHHHHHHHhhcC
Confidence 99999999999965 68999999999999863
No 51
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.97 E-value=7.9e-31 Score=319.41 Aligned_cols=290 Identities=17% Similarity=0.196 Sum_probs=211.0
Q ss_pred cEEEEECchHHHHHHHHHHHHc-C-CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTW-A-YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~-G-y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+||||+|+|.. ..+++++++. | ++++ ++ |.+.+++...++|+++.+|... +.+| ++.++++
T Consensus 5 ~~Ili~g~g~~-~~l~~~l~~~~~~~~v~-----------~~--d~~~~~~~~~~~d~~~~~~~~~-~~~~--~~~l~~~ 67 (331)
T 2pn1_A 5 PHLLITSAGRR-AKLVEYFVKEFKTGRVS-----------TA--DCSPLASALYMADQHYIVPKID-EVEY--IDHLLTL 67 (331)
T ss_dssp CEEEEESCTTC-HHHHHHHHHHCCSSEEE-----------EE--ESCTTCGGGGGSSSEEECCCTT-STTH--HHHHHHH
T ss_pred ceEEEecCCch-HHHHHHHHHhcCCCEEE-----------EE--eCCCcchhHHhhhceecCCCCC-ChhH--HHHHHHH
Confidence 58999998865 5677888876 5 5553 44 3345667778899999887432 2334 8999999
Q ss_pred HHHcCCCEEEeCCCcCCC-CCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 127 AEMTRVDAVWPGWGHASE-IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SE-n~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
|+++++|+|+|+++.... ...+.+.|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 68 ~~~~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------- 134 (331)
T 2pn1_A 68 CQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYA------------- 134 (331)
T ss_dssp HHHHTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEES-------------
T ss_pred HHHcCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEe-------------
Confidence 999999999998763221 112356777789999999999999999999999999999999999653
Q ss_pred cCcccccccccCCHHHHHHHh--hccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 206 IPDDVYRQACVYTTEEAIASC--QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a--~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+++.++. +++|||+||||..|+||+|++++++.+|+.++++. ..+++||+|++| +|+
T Consensus 135 ------------~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~------~~~~lvee~i~G-~e~ 195 (331)
T 2pn1_A 135 ------------TMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK------NTDLIVQELLVG-QEL 195 (331)
T ss_dssp ------------SHHHHHHHHHTTSSCSCEEEEESBC-----------------------------CEEEEECCCS-EEE
T ss_pred ------------cHHHhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh------CCCeEEEecCCC-cEE
Confidence 345555555 57999999999999999999999999999988764 358999999987 899
Q ss_pred eEEEEEc-CCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 284 EVQLLCD-QYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 284 eVqvl~D-~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+|.++.| .+|+++.+..+.+...+.. .....+.. ..+++.+.+.++++++||.|.+++||+.+ +|++||+
T Consensus 196 ~v~~~~d~~~G~~~~~~~~~~~~~~~g--~~~~~~~~-----~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g~~~~i 266 (331)
T 2pn1_A 196 GVDAYVDLISGKVTSIFIKEKLTMRAG--ETDKSRSV-----LRDDVFELVEHVLDGSGLVGPLDFDLFDV--AGTLYLS 266 (331)
T ss_dssp EEEEEECTTTCCEEEEEEEEEEEEETT--EEEEEEEE-----CCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TTEEEEE
T ss_pred EEEEEEecCCCeEEEEEEEEEEEecCC--ceeEeEEe-----ccHHHHHHHHHHHHHhCCcceEEEEEEEc--CCCEEEE
Confidence 9999998 7788887665554322221 11222211 23678889999999999999999999965 7899999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
|+|||+++.+++ +..+|+|++++++++++|.+++
T Consensus 267 EiN~R~~g~~~~-~~~~G~~~~~~~~~~~~g~~~~ 300 (331)
T 2pn1_A 267 EINPRFGGGYPH-AYECGVNFPAQLYRNLMHEINV 300 (331)
T ss_dssp EEESSCCTTHHH-HHHTTCCHHHHHHHHHTTCCCC
T ss_pred EEeCCCCCchHH-HHHcCCCHHHHHHHHHcCCCCC
Confidence 999999999875 6789999999999999999875
No 52
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.96 E-value=1.8e-29 Score=312.05 Aligned_cols=242 Identities=18% Similarity=0.166 Sum_probs=196.1
Q ss_pred HHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCC
Q 000086 123 IVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPES 201 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~ 201 (2304)
..+..+..++|+|+|. +|+..|+..++..|+..||+|+||++.++..+.||..+|++++++|||+|+|.. +.
T Consensus 89 ~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~----~~--- 161 (357)
T 4fu0_A 89 ASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVT----FK--- 161 (357)
T ss_dssp ----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEE----EE---
T ss_pred hhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEe----ec---
Confidence 4445566789999998 789999999999999999999999999999999999999999999999999865 00
Q ss_pred cccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000086 202 CLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2304)
Q Consensus 202 ~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~r 281 (2304)
......++.++++++||||||||+.|+||+||++|++.++|.++++.+... +..+++|+|++| +
T Consensus 162 -------------~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~--~~~vlvE~~i~G-~ 225 (357)
T 4fu0_A 162 -------------RFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH--DTEVIVEETING-F 225 (357)
T ss_dssp -------------GGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCCS-E
T ss_pred -------------CCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc--CCeEEEEEecCC-E
Confidence 012234455677889999999999999999999999999999999987654 568999999975 9
Q ss_pred eeeEEEEEcCCCCEEEe--eccccccccccceEEEe-----CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc
Q 000086 282 HLEVQLLCDQYGNVAAL--HSRDCSVQRRHQKIIEE-----GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2304)
Q Consensus 282 eieVqvl~D~~G~vi~l--~~RdcSvqrr~qKiiee-----aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~ 354 (2304)
|++|.+++++.+.+..+ ....+.++++++|.... .|+. +++++.++|.+.|.++++++|++|.++|||++++
T Consensus 226 e~~v~vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~-l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~ 304 (357)
T 4fu0_A 226 EVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR-IDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP 304 (357)
T ss_dssp EEEEEEEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEESSCS-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEEEecCCceEEEEEEEEcccccccccccccCCCceEecCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeC
Confidence 99999999876544322 23345566666665432 3554 8999999999999999999999999999999984
Q ss_pred cCCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHH
Q 000086 355 ETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 355 ~~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~ 389 (2304)
+|++||+|||||++-+ .|..-.++|+|+.++.-+
T Consensus 305 -dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 342 (357)
T 4fu0_A 305 -SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDK 342 (357)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHH
T ss_pred -CCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHH
Confidence 7889999999998754 244445689988776544
No 53
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.95 E-value=4.7e-27 Score=292.55 Aligned_cols=234 Identities=18% Similarity=0.149 Sum_probs=191.4
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++|+|+|+. |...|+..++..|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 91 ~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~--------------- 155 (377)
T 1ehi_A 91 AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIV--------------- 155 (377)
T ss_dssp TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEE---------------
T ss_pred ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEE---------------
Confidence 35799999997 67778888889999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHHH----HHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEE----AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~ee----a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.++ +.++++++|||+||||..|+||+||.+|+|.++|..+++.+... +.+++||+|++|.+|+
T Consensus 156 --------~~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~ 225 (377)
T 1ehi_A 156 --------VDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY--DYKVLIEEAVNGAREL 225 (377)
T ss_dssp --------ECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCCSCEE
T ss_pred --------EeccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc--CCcEEEEcCCCCCceE
Confidence 233222 44556789999999999999999999999999999999887643 4689999999876899
Q ss_pred eEEEEEcCCCCEEEeeccccc-------cccccceE------EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCS-------VQRRHQKI------IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEY 350 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcS-------vqrr~qKi------ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEf 350 (2304)
+|.+++|+.+.++......+. +.+.+.|. ....|+. ++++..+++.+.|.++++++|+.|.++|||
T Consensus 226 ~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 304 (377)
T 1ehi_A 226 EVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 (377)
T ss_dssp EEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999876566665544331 22222222 2234776 889999999999999999999999999999
Q ss_pred EEEccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHH
Q 000086 351 LYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~ 389 (2304)
++++ +|++||+|+|||++... |....++|+|++++..+
T Consensus 305 ~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~ 346 (377)
T 1ehi_A 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDM 346 (377)
T ss_dssp EECT-TCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHH
T ss_pred EEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 9984 67899999999998653 44445799999666444
No 54
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.95 E-value=7.9e-27 Score=283.57 Aligned_cols=278 Identities=18% Similarity=0.206 Sum_probs=211.3
Q ss_pred CCccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000086 46 KPIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2304)
Q Consensus 46 ~~~~kILIan~G~---------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~s 116 (2304)
.|.+||+|+-+|. .|..+++++++.||+++ .. |....
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~-----------~i--~~~~~--------------------- 56 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAH-----------PF--DPAER--------------------- 56 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTTTS---------------------
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEE-----------EE--eCCCc---------------------
Confidence 4567888887764 68899999999999985 22 21100
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
+. . ..++.++|.|++.. |...|+..++..|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 57 ~~--~----~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--- 127 (317)
T 4eg0_A 57 PL--S----ALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFET--- 127 (317)
T ss_dssp CT--T----HHHHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE---
T ss_pred hH--H----HhhhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEE---
Confidence 00 0 12456889999864 34458888999999999999999999999999999999999999999999875
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHh----hccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASC----QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI 271 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a----~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i 271 (2304)
+.+.+++.+++ +++|||+||||..|+||+|+++|++.+++.++++.+... ..++
T Consensus 128 --------------------~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~ 185 (317)
T 4eg0_A 128 --------------------VMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATH--DKIV 185 (317)
T ss_dssp --------------------EETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTT--CSEE
T ss_pred --------------------EECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeE
Confidence 33334444455 789999999999999999999999999999999886533 5689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeee
Q 000086 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346 (2304)
Q Consensus 272 ~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~ 346 (2304)
+||+|++.++|++|.+++|..+.++.+.... .+.....|. ....|+. ++++..+++.+.+.++++++|++|.+
T Consensus 186 lvEe~i~~G~E~~v~vl~~~~~~~~~i~~~~-~~~~~~~k~~~g~~~~~~P~~-l~~~~~~~l~~~a~~~~~~lg~~G~~ 263 (317)
T 4eg0_A 186 IVEKSIEGGGEYTACIAGDLDLPLIKIVPAG-EFYDYHAKYVANDTQYLIPCG-LPAEQETELKRIARRAFDVLGCTDWG 263 (317)
T ss_dssp EEEECCCSSEEEEEEEETTCCCCCEEEEC----------------CEEESSCS-SCHHHHHHHHHHHHHHHHTTTCCSEE
T ss_pred EEEcCCCCCcEEEEEEECCcccceEEEeeCC-ceechhhcccCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCceE
Confidence 9999998459999999998777776654332 122222232 2346776 88999999999999999999999999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHHH
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~iA 391 (2304)
+|||++++ +|++||+|+|||++.. .|..-..+|+|++++..++.
T Consensus 264 ~vD~~~~~-~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 264 RADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp EEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEeC-CCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 99999985 6889999999999854 24444578999998887764
No 55
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.94 E-value=4.7e-27 Score=291.05 Aligned_cols=235 Identities=18% Similarity=0.206 Sum_probs=187.7
Q ss_pred HHcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 128 EMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 128 ~~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
+..++|+|+|+. |...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 84 ~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 149 (364)
T 2i87_A 84 SGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYIS-------------- 149 (364)
T ss_dssp TSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEE--------------
T ss_pred cccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE--------------
Confidence 356799999987 67778888899999999999999999999999999999999999999999875
Q ss_pred CcccccccccCCHH-------HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc
Q 000086 207 PDDVYRQACVYTTE-------EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279 (2304)
Q Consensus 207 ~~~~~~~~~V~s~e-------ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g 279 (2304)
+.+.+ ++.++++++|||+||||..|+||+||.+|++.++|..+++.+.. .+.+++||+|++|
T Consensus 150 ---------~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~--~~~~~lvEe~I~G 218 (364)
T 2i87_A 150 ---------FLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ--FDRKLVIEQGVNA 218 (364)
T ss_dssp ---------EEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT--TCSEEEEEECCCC
T ss_pred ---------EechhhcccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCeEEEEeCccC
Confidence 33333 45566778999999999999999999999999999999988764 2468999999986
Q ss_pred cceeeEEEEEcCCCCEEEeecccc--ccccccceEEE-----eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDC--SVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~Rdc--Svqrr~qKiie-----eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
+|++|.+++|+.+.++..+...+ .+.+...|... ..|+. ++++..+++.+.|.++++++|+.|.++|||++
T Consensus 219 -~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 296 (364)
T 2i87_A 219 -REIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD-LDEDVQLTLRNMALEAFKATDCSGLVRADFFV 296 (364)
T ss_dssp -EEEEEEEEESSSCEECCCEEECCSCCC-----------CCEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred -eEEEEEEEcCCCcEEeeeEEEecCCCcCCHHHcccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 89999999986543333322221 23333344432 24766 88999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
++ +|++||+|+|||+++.. |....++|+|++++..++
T Consensus 297 ~~-~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 337 (364)
T 2i87_A 297 TE-DNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKL 337 (364)
T ss_dssp CT-TCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred ec-CCCEEEEEEeCCCCCCchhHHHHHHHHhCCCHHHHHHHH
Confidence 84 68899999999998753 334456899997775443
No 56
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.94 E-value=3.1e-26 Score=275.26 Aligned_cols=273 Identities=17% Similarity=0.262 Sum_probs=210.1
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000086 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2304)
Q Consensus 47 ~~~kILIan~G~---------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY 117 (2304)
|.+||+|+++|. .+..++++++++||+++ .. |.+ +.....
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~-----------~~--~~~-~~~~~~----------------- 49 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-----------PV--DPK-EVDVTQ----------------- 49 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTT-TSCGGG-----------------
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEE-----------EE--ecC-chHHHH-----------------
Confidence 346899999987 77899999999999985 33 211 111000
Q ss_pred cCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCcc
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~ 196 (2304)
+.+.++|+|++.. |...|+..+...++..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 50 ---------~~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~---- 116 (306)
T 1iow_A 50 ---------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA---- 116 (306)
T ss_dssp ---------TTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE----
T ss_pred ---------hhccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEE----
Confidence 1134678998874 33346667788888899999999999999999999999999999999999765
Q ss_pred CCCCCcccccCcccccccccCCHHHHHH--------HhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC
Q 000086 197 IPPESCLVTIPDDVYRQACVYTTEEAIA--------SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268 (2304)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~--------~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~ 268 (2304)
+.+. ++.+ +++++|||+||||..|+||+||++|++.+++.++++.+... +
T Consensus 117 -------------------~~~~-~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~--~ 174 (306)
T 1iow_A 117 -------------------LTRA-EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH--D 174 (306)
T ss_dssp -------------------EEHH-HHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTT--C
T ss_pred -------------------Echh-hhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--C
Confidence 3444 5544 67789999999999999999999999999999999887532 5
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEeeccc-----ccccccc--ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 000086 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRD-----CSVQRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341 (2304)
Q Consensus 269 ~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~Rd-----cSvqrr~--qKiieeaPa~~l~~e~~~~m~e~A~rlakalG 341 (2304)
.+++||+|++| +|++|.++. |+++...... +.....+ .......|+. ++++..+++.+.+.++++++|
T Consensus 175 ~~~lvee~i~g-~e~~v~~~~---g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg 249 (306)
T 1iow_A 175 EEVLIEKWLSG-PEFTVAILG---EEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAG-LEASQEANLQALVLKAWTTLG 249 (306)
T ss_dssp SEEEEEECCCC-CEEEEEEET---TEECCCEEEECSSSSSCHHHHHTCSCCEEESSCC-CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCcCC-EEEEEEEEC---CCccceEEEEeCCCeEchhheecCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHcC
Confidence 78999999985 899999993 3333322110 1110000 1223445775 788899999999999999999
Q ss_pred ceeeeEEEEEEEccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 342 YVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 342 y~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
+.|.+++||++++ +|++||+|+|||+++.. |.....+|+|++++.+++.
T Consensus 250 ~~G~~~vD~~~~~-~g~~~~iEiN~rpg~~~~s~~p~~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 250 CKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 (306)
T ss_dssp CCSEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CceEEEEEEEEcC-CCCEEEEEecCCCCCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999984 67899999999998753 3445678999999998765
No 57
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=99.94 E-value=2e-27 Score=288.68 Aligned_cols=246 Identities=16% Similarity=0.198 Sum_probs=196.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-CccccCCCCChHHHhhcccCCCCCcccccccCCCce
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP-VEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFV 1924 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~-~~~~P~~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~ 1924 (2304)
+++.+..+|.++...+++.++.|++. +|. +..-|.++|+ |++|+. |||+ |+
T Consensus 56 ~~~~~~~~e~~~~~~~~~~~~~l~~~--------------~r~~~~r~~~rp~~-re~I~~-----------l~D~--f~ 107 (339)
T 2f9y_A 56 IDEEVHRLREKSVELTRKIFADLGAW--------------QIAQLARHPQRPYT-LDYVRL-----------AFDE--FD 107 (339)
T ss_dssp -CCGGGGTHHHHHTTTTHHHHTCCHH--------------HHHHHHTCTTCCCH-HHHHHH-----------HCEE--EE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHH--------------HhhcccCCCCCCCH-HHHHHH-----------Hccc--cE
Confidence 56667888899999999999987621 111 0011226886 999997 7888 99
Q ss_pred eccc--CCC--CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccC
Q 000086 1925 ETLE--GWA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREE 2000 (2304)
Q Consensus 1925 E~~~--~~a--~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~ 2000 (2304)
|+.+ .|+ +++|||+|||+|+||+|||++++. ++.+ .+...||+|+|++++|++|++++|++++
T Consensus 108 El~g~~~~~~d~avV~G~ari~G~~V~Via~d~~~------------~~~~-~~~~~~G~~~~~~~~Ka~r~~~~A~~~~ 174 (339)
T 2f9y_A 108 ELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGR------------ETKE-KIRRNFGMPAPEGYRKALRLMQMAERFK 174 (339)
T ss_dssp ECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCS------------STTH-HHHTGGGCCCHHHHHHHHHHHHHHHHTT
T ss_pred EccCCcCCCCCCcEEEEEEEECCEEEEEEEEeCCC------------chhh-hhhhhcCCCCHHHHHHHHHHHHHHhhcC
Confidence 9988 688 899999999999999999997542 1222 3455689999999999999999999999
Q ss_pred CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2001 LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2001 lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+|||+|+||+||.+|..+|..|+.+++++++.+++++++|+|++|. |+++||+..++.. +|+ +||||+|++++
T Consensus 175 lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~--G~a~GGGa~~~~~---~D~--via~p~A~~~v 247 (339)
T 2f9y_A 175 MPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVI--GEGGSGGALAIGV---GDK--VNMLQYSTYSV 247 (339)
T ss_dssp CCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEEHHHHHTTCC---CSE--EEECTTCEEES
T ss_pred CCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--CCcCcHHHHHHhc---cCe--eeecCCCEEEe
Confidence 9999999999999999999999999999999999999999999999 6666654444432 688 99999999999
Q ss_pred eCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHH
Q 000086 2081 LEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLR 2160 (2304)
Q Consensus 2081 l~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~r 2160 (2304)
|+|++++.|.+++..-. .+ |.++ ...++.+
T Consensus 248 ~~Peg~asil~~~~~~~--------------------------~~----------------------Aae~--~~itA~~ 277 (339)
T 2f9y_A 248 ISPEGCASILWKSADKA--------------------------PL----------------------AAEA--MGIIRPR 277 (339)
T ss_dssp SCHHHHHHHHSSCSTTH--------------------------HH----------------------HHHH--HTCSHHH
T ss_pred eccchHHHHHHHhhccH--------------------------HH----------------------HHHH--cCCCHHH
Confidence 99999999998865100 00 0011 3457899
Q ss_pred HHHcCCcceecC-c----cchHHHHHHHHHHHHH
Q 000086 2161 MAAKGVIKEVVD-W----DKSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2161 m~~~G~Id~vi~-~----~~tR~~~~~~L~r~l~ 2189 (2304)
+++.|+||+||+ | ...+..+++.||+.|.
T Consensus 278 a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~ 311 (339)
T 2f9y_A 278 LKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLL 311 (339)
T ss_dssp HHTTTSCSCCCCCSTTCGGGCHHHHHHHHHHHHH
T ss_pred HHHcCCeeEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 999999999998 3 4566778888888864
No 58
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=99.94 E-value=2.3e-27 Score=287.42 Aligned_cols=249 Identities=16% Similarity=0.195 Sum_probs=195.1
Q ss_pred ccCceE---EEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-CccccCCCCChHHHhhcccCCCCCcccccc
Q 000086 1843 TNGVVH---LTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP-VEYLPENSCDPRAAICGFLDNNGKWIGGIF 1918 (2304)
Q Consensus 1843 ~nGv~d---~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~-~~~~P~~~yD~r~~i~~~~d~~~~~~~gl~ 1918 (2304)
.+|.+| .++.+|.++.+.+++.++.+++ |++. +..-|.++|+ |++|+. ||
T Consensus 36 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~--------------~~~~~~~~~~~r~~~-re~I~~-----------l~ 89 (327)
T 2f9i_A 36 DKNDVDLQEEIDMLEASLERETKKIYTNLKP--------------WDRVQIARLQERPTT-LDYIPY-----------IF 89 (327)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHSCCH--------------HHHHHHHTBTTSCCH-HHHHHH-----------HC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHhcCCh--------------hhcccccCCCCCCCH-HHHHHH-----------hc
Confidence 345555 6788899999999999998752 1110 0111237886 999997 78
Q ss_pred cCCCceeccc--CCC--CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHH
Q 000086 1919 DKDSFVETLE--GWA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALM 1994 (2304)
Q Consensus 1919 D~gsF~E~~~--~~a--~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~ 1994 (2304)
|+ |+|+.+ .|+ +++|||+|||+|+||+||++++++. +.+ .+.+.||+|+|++++|++||++
T Consensus 90 D~--f~El~~d~~~~~d~~vV~G~gri~G~~V~Via~d~~~~------------~~~-~~~~~~G~~~~~~~~Ka~r~~~ 154 (327)
T 2f9i_A 90 DS--FMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKD------------TKD-NIYRNFGMAHPEGYRKALRLMK 154 (327)
T ss_dssp EE--EEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCSS------------HHH-HHHTGGGCCCHHHHHHHHHHHH
T ss_pred cc--eEEecCCCCcCcccceEEEEEEECCEEEEEEEEcCCCc------------hhh-hhhhhcCCCCHHHHHHHHHHHH
Confidence 88 999988 688 8999999999999999999975421 222 3445689999999999999999
Q ss_pred HhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeeccc
Q 000086 1995 DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADR 2074 (2304)
Q Consensus 1995 ~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p 2074 (2304)
+|+++++|||+|+||+||.+|..+|..|+.+++++++.+++++++|+|++|. |+++||+..++.. +|+ ++|||
T Consensus 155 ~A~~~~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~--G~a~GGGa~~~~~---~D~--via~~ 227 (327)
T 2f9i_A 155 QAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVI--GEGGSGGALGIGI---ANK--VLMLE 227 (327)
T ss_dssp HHHHTTCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEBHHHHHTTCC---CSE--EEEET
T ss_pred HHhhcCCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEE--CCcChHHHHHHHC---CCE--EEEcC
Confidence 9999999999999999999999999999999999999999999999999999 6666544444432 688 99999
Q ss_pred CcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhh
Q 000086 2075 TAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAEL 2154 (2304)
Q Consensus 2075 ~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~ 2154 (2304)
+|++|+|+|++++.+.+++.... .+. .++ .
T Consensus 228 ~A~~~v~~peg~a~il~~~~~~a--------------------------~~A----------------------~e~--~ 257 (327)
T 2f9i_A 228 NSTYSVISPEGAAALLWKDSNLA--------------------------KIA----------------------AET--M 257 (327)
T ss_dssp TCBCBSSCHHHHHHHHSSCGGGH--------------------------HHH----------------------HHH--H
T ss_pred CceEeecCchHHHHHHHHHhcch--------------------------HHH----------------------HHH--c
Confidence 99999999999999998865110 000 011 3
Q ss_pred cccHHHHHHcCCcceecC-c----cchHHHHHHHHHHHHH
Q 000086 2155 HDTSLRMAAKGVIKEVVD-W----DKSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2155 hdt~~rm~~~G~Id~vi~-~----~~tR~~~~~~L~r~l~ 2189 (2304)
+.++.++++.|+||+||+ | ...+..+++.+|+.|.
T Consensus 258 ~itA~~a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~ 297 (327)
T 2f9i_A 258 KITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFV 297 (327)
T ss_dssp TCBHHHHHHTTSSSEEECCCTTCGGGCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHcCCceEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 457899999999999999 3 3556778888888764
No 59
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.94 E-value=1.3e-26 Score=289.28 Aligned_cols=234 Identities=17% Similarity=0.208 Sum_probs=192.4
Q ss_pred HcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++|+|+|+ .|...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 115 ~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~--------------- 179 (386)
T 3e5n_A 115 LAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVC--------------- 179 (386)
T ss_dssp CCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred cCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 4579999999 788889999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHH----HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTE----EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~e----ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.+ ++.++++++|||+||||..|+||+||++|++.+||.++++.+... +.+++||+|++| +|+
T Consensus 180 --------~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 248 (386)
T 3e5n_A 180 --------FDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAY--DHKVLVEAAVAG-REI 248 (386)
T ss_dssp --------EEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT--CSEEEEEECCCS-EEE
T ss_pred --------EeCcccchhhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC--CCcEEEEcCCCC-eEE
Confidence 44444 566777889999999999999999999999999999999887643 468999999987 999
Q ss_pred eEEEEEcCCCCEEEeeccccc--cccccceEEEe------CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 284 EVQLLCDQYGNVAALHSRDCS--VQRRHQKIIEE------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcS--vqrr~qKiiee------aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
+|.+++|+.+.++......+. ++....|.... .|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 249 ~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 326 (386)
T 3e5n_A 249 ECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD-IDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA- 326 (386)
T ss_dssp EEEEECSSSCEEEEEEEECC-----------------CEESSCS-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT-
T ss_pred EEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 999999876666655554443 33444455432 3776 8899999999999999999999999999999994
Q ss_pred CCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|||++.. .|..-.++|+|++++..++
T Consensus 327 dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 327 DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHH
Confidence 6789999999999854 2444457899998876554
No 60
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.94 E-value=7.1e-26 Score=280.72 Aligned_cols=234 Identities=18% Similarity=0.182 Sum_probs=192.8
Q ss_pred HcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++|+|+|+ +|...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 96 ~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~--------------- 160 (364)
T 3i12_A 96 LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT--------------- 160 (364)
T ss_dssp CCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred cCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 3578999999 799999999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHH----HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTE----EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~e----ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.+ ++.++++++|||+||||..|+||+||++|++.+|+.++++.+... +.+++||+|++| +|+
T Consensus 161 --------~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 229 (364)
T 3i12_A 161 --------LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF--DHKVVVEQGIKG-REI 229 (364)
T ss_dssp --------EETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEE
T ss_pred --------EEccccchhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc--CCcEEEEcCcCC-eEE
Confidence 33333 566677889999999999999999999999999999999987654 468999999987 999
Q ss_pred eEEEEEcCCCCEEEeeccc--cccccccceE------EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 284 EVQLLCDQYGNVAALHSRD--CSVQRRHQKI------IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rd--cSvqrr~qKi------ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
+|.+++|+.+.+....... ..++..+.|. ....|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 230 ~v~vl~~~~~~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~- 307 (364)
T 3i12_A 230 ECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTA- 307 (364)
T ss_dssp EEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred EEEEEeCCCceEeeeEEEecCCCccCHHHcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEec-
Confidence 9999998764444433211 1122233332 2345776 8899999999999999999999999999999984
Q ss_pred CCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|+|++.. .|....++|+|++++..++
T Consensus 308 ~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~l 346 (364)
T 3i12_A 308 DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRL 346 (364)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHH
Confidence 6889999999888754 2454557899999876654
No 61
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=99.94 E-value=3.8e-26 Score=271.84 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=164.6
Q ss_pred ccccC----CCCChHHHhhcccCCCCCcccccccCCCceecccC------------------------CCCeEEEEEEEE
Q 000086 1890 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG------------------------WARTVVTGRARL 1941 (2304)
Q Consensus 1890 ~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~------------------------~a~~vVtG~arl 1941 (2304)
.++|. .++++|++|+. |||+|||+|+.+. +++++|||+|||
T Consensus 50 ~v~p~~~~~~r~~arerI~~-----------L~D~gsF~El~~~~~~~~~l~f~~y~~~l~~~~~~t~~~~avVtG~g~I 118 (285)
T 2f9i_B 50 NVCFNCDHHIALTAYKRIEA-----------ISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQL 118 (285)
T ss_dssp TBCTTTCCBCCCCHHHHHHH-----------TSCTTCCEEESTTCEECCTTCCTTHHHHHHHHHHHHCCSSSEEEEEEEE
T ss_pred CcCCCCCCCCCCCHHHHHHH-----------HccCCCcEEECCCcCcCCcccccchhHHHHHHhhccCCCCeEEEEEEEE
Confidence 45554 67999999997 8999999999876 799999999999
Q ss_pred CCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhh
Q 000086 1942 GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFE 2021 (2304)
Q Consensus 1942 ~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~ 2021 (2304)
+|+||+|+|+|++++ ||++++.+++|++|++++|+++++|||+|+|++|+ .|++
T Consensus 119 ~G~~V~v~a~d~~~~---------------------gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsgGa-----r~qE 172 (285)
T 2f9i_B 119 DGMKFGVAVMDSRFR---------------------MGSMGSVIGEKICRIIDYCTENRLPFILFSASGGA-----RMQE 172 (285)
T ss_dssp TTEEEEEEEECTTTG---------------------GGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECSC-----CGGG
T ss_pred CCEEEEEEEEccccc---------------------cCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc-----chhh
Confidence 999999999987765 89999999999999999999999999999999997 4677
Q ss_pred hHHH--HHHH---HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhH
Q 000086 2022 GILQ--AGST---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKEL 2096 (2304)
Q Consensus 2022 gilk--~ga~---iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~ 2096 (2304)
|+++ ++++ .+.+++++++|+|++|+ |+++||+...+. ..+|+ ++|||+|++||++|+++..+.+++-
T Consensus 173 Gi~sl~q~aki~~~l~~~s~~~vP~Isvv~--g~~~GG~~as~a--~~~D~--i~a~p~A~i~~aGP~vi~~~~~~~~-- 244 (285)
T 2f9i_B 173 GIISLMQMGKTSVSLKRHSDAGLLYISYLT--HPTTGGVSASFA--SVGDI--NLSEPKALIGFAGRRVIEQTINEKL-- 244 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGG--GCCSE--EEECTTCBEESSCHHHHHHHHTSCC--
T ss_pred hhhhHhHHHHHHHHHHHHHcCCCCEEEEEe--CCccHHHHHHhh--hCCCE--EEEeCCcEEEEcCHHHHHHHhcccc--
Confidence 8875 4555 67777888999999999 777888866543 35688 9999999999999999866643210
Q ss_pred HHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccch
Q 000086 2097 LECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKS 2176 (2304)
Q Consensus 2097 ~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~t 2176 (2304)
+ +...++..+.+.|+||.||+++++
T Consensus 245 -------------------------~------------------------------e~~~~Ae~~~~~G~iD~Iv~~~e~ 269 (285)
T 2f9i_B 245 -------------------------P------------------------------DDFQTAEFLLEHGQLDKVVHRNDM 269 (285)
T ss_dssp -------------------------C------------------------------TTTTBHHHHHHTTCCSEECCGGGH
T ss_pred -------------------------h------------------------------HhHhhHHHHHhcCCccEEeChHHH
Confidence 0 011357778899999999999999
Q ss_pred HHHHHHHHH
Q 000086 2177 RSFFCRRLR 2185 (2304)
Q Consensus 2177 R~~~~~~L~ 2185 (2304)
|+.+...|.
T Consensus 270 r~~l~~~L~ 278 (285)
T 2f9i_B 270 RQTLSEILK 278 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877665
No 62
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.94 E-value=6.3e-26 Score=273.60 Aligned_cols=270 Identities=19% Similarity=0.219 Sum_probs=201.7
Q ss_pred EEEEECch---------HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCH
Q 000086 50 SILIANNG---------MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120 (2304)
Q Consensus 50 kILIan~G---------~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dv 120 (2304)
||+|+-+| ..+..+++++++.||+++ .. |.+.....
T Consensus 5 ~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~-----------~i--~~~~~~~~---------------------- 49 (307)
T 3r5x_A 5 RIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIV-----------PI--TLNEKMDL---------------------- 49 (307)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEE-----------EE--ECSSGGGH----------------------
T ss_pred EEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEE-----------EE--cccCchhH----------------------
Confidence 67777665 467889999999998875 22 21100000
Q ss_pred HHHHHHHHHcCCCEEEeCCCc-CCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCC
Q 000086 121 QLIVEMAEMTRVDAVWPGWGH-ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP 199 (2304)
Q Consensus 121 d~Ii~iA~~~~vDaV~pG~G~-~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~ 199 (2304)
+.+..++|.|+++... ..|+..+...|+..|++++||++++++.+.||..++++++++|||+|+|..
T Consensus 50 -----~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~------- 117 (307)
T 3r5x_A 50 -----IEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIE------- 117 (307)
T ss_dssp -----HHHTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------
T ss_pred -----HHhccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE-------
Confidence 1223578999998632 237777888999999999999999999999999999999999999999875
Q ss_pred CCcccccCcccccccccCCHHHHHH-HhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000086 200 ESCLVTIPDDVYRQACVYTTEEAIA-SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2304)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~-~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~ 278 (2304)
+.+.+++.. +++.+|||+||||..|+||+||++|++.+++.++++.+... +.+++||+|++
T Consensus 118 ----------------~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvee~i~ 179 (307)
T 3r5x_A 118 ----------------LTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIK 179 (307)
T ss_dssp ----------------EESSSCCCHHHHHHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH--CSEEEEEECCC
T ss_pred ----------------EeChhhhhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEECCcC
Confidence 222222222 56778999999999999999999999999999999887654 46899999998
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccc--cccceE----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQ--RRHQKI----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvq--rr~qKi----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
| +|++|.++.+ +++.+....+..+ ....|. ....|+. ++++..+++.+.+.++++++|+.|.+++||++
T Consensus 180 G-~e~~v~v~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~ 254 (307)
T 3r5x_A 180 G-EEITCSIFDG---KQLPIISIRHAAEFFDYNAKYDDASTIEEVIE-LPAELKERVNKASLACYKALKCSVYARVDMMV 254 (307)
T ss_dssp S-EEEEEEEETT---EECCCEEEEEEEEEETTEEEEEEEEEEEEECC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred C-EEEEEEEECC---EEeeEEEEEcCCcccChhhcCCCCCCeEecCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 6 8999998643 3432222222211 223333 2223665 88999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
+ +|++||+|+|||++... |.....+|+|+.++..++.
T Consensus 255 ~--~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll 295 (307)
T 3r5x_A 255 K--DGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMII 295 (307)
T ss_dssp E--TTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred E--CCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHH
Confidence 9 68999999999998542 4456678999988776653
No 63
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.93 E-value=4.8e-26 Score=279.75 Aligned_cols=232 Identities=20% Similarity=0.274 Sum_probs=184.3
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++|+|+|.. |...|+..+...|+..|++++|+++.++..+.||..++++++++|||+|+|..
T Consensus 88 ~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 152 (343)
T 1e4e_A 88 INHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWV--------------- 152 (343)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEE---------------
T ss_pred cccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEE---------------
Confidence 45799999985 45567878889999999999999999999999999999999999999999865
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+.+.+++. .+++|||+||||..|+||+||++|++.+||..+++.+... +.+++||+|++| +|++|.+
T Consensus 153 --------~~~~~~~~--~~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~lvEe~I~G-~E~~v~v 219 (343)
T 1e4e_A 153 --------INKDDRPV--AATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY--DSKILIEQAVSG-CEVGCAV 219 (343)
T ss_dssp --------ECTTCCCC--GGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT--CSSEEEEECCCS-EEEEEEE
T ss_pred --------Eechhhhh--hhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEEeCcCC-eEEEEEE
Confidence 22222211 1578999999999999999999999999999999887542 568999999986 8999999
Q ss_pred EEcCCCCEEEee--cccc--ccccccce---------EEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc
Q 000086 288 LCDQYGNVAALH--SRDC--SVQRRHQK---------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2304)
Q Consensus 288 l~D~~G~vi~l~--~Rdc--Svqrr~qK---------iieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~ 354 (2304)
++++.+ +..+. ...+ .+.....| .....|+. ++++..+++.+.|.++++++|+.|.+++||++++
T Consensus 220 l~~~~~-~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 297 (343)
T 1e4e_A 220 LGNSAA-LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD 297 (343)
T ss_dssp EEETTC-CEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT
T ss_pred EeCCCC-eEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC
Confidence 998754 22221 1111 01111112 22345766 8889999999999999999999999999999984
Q ss_pred cCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 355 ETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 355 ~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
+|++||+|+|||++... |....++|+|+.++..++.
T Consensus 298 -~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 298 -NGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred -CCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 68899999999998752 4445567999988877653
No 64
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.93 E-value=2.9e-25 Score=276.02 Aligned_cols=231 Identities=19% Similarity=0.267 Sum_probs=187.6
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 131 ~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
++|+|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~----------------- 171 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAV----------------- 171 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEE-----------------
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE-----------------
Confidence 699999998 78889999999999999999999999999999999999999999999999875
Q ss_pred cccccccCCHHH--HHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 210 VYRQACVYTTEE--AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 210 ~~~~~~V~s~ee--a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+.+.++ ....++++|||+||||..|+||+||.+|++.+||.++++.+... +.+++||+|++| +|++|.+
T Consensus 172 ------~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~~v~v 242 (373)
T 3lwb_A 172 ------LRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH--DPKVIVEAAISG-RELECGV 242 (373)
T ss_dssp ------ECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT--CSSEEEEECCEE-EEEEEEE
T ss_pred ------EECcccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEeCCCCC-eEEEEEE
Confidence 112111 11235679999999999999999999999999999999988753 568999999986 9999999
Q ss_pred EEcCCCC--EEEeeccccc--------cccccceEE-----EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 288 LCDQYGN--VAALHSRDCS--------VQRRHQKII-----EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 288 l~D~~G~--vi~l~~RdcS--------vqrr~qKii-----eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
++++.+. +.......+. +.+...|.. ...|+. ++++..+++.+.|.++++++|++|.++|||++
T Consensus 243 l~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~ 321 (373)
T 3lwb_A 243 LEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK-VDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 321 (373)
T ss_dssp EECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred EECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEE
Confidence 9988663 2222222222 444334433 234776 89999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
++ +|. ||+|+|||++... |..-.++|+|++++..++
T Consensus 322 ~~-dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~l 361 (373)
T 3lwb_A 322 TD-DGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATM 361 (373)
T ss_dssp ET-TEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred EC-CCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 94 567 9999999998542 434457899987765443
No 65
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.93 E-value=8.9e-26 Score=277.86 Aligned_cols=232 Identities=17% Similarity=0.212 Sum_probs=185.0
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+.++|.|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 88 ~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 152 (346)
T 3se7_A 88 TIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWT--------------- 152 (346)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEE---------------
T ss_pred ccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE---------------
Confidence 46799999987 78889999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+.+.+ ..+++++|||+||||..|+||+|+++|++.+||.++++.+... +.+++||+|++| +|++|.+
T Consensus 153 --------~~~~~--~~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G-~E~~v~v 219 (346)
T 3se7_A 153 --------VTADE--KIPTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY--DSKVLIEEAVIG-TEIGCAV 219 (346)
T ss_dssp --------EETTS--CCCTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT--CSEEEEEECCCS-EEEEEEE
T ss_pred --------EcCcH--HHHHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC--CCcEEEEeCcCC-EEEEEEE
Confidence 12211 2345679999999999999999999999999999999987643 568999999985 8999999
Q ss_pred EEcCCCCEE-Eeeccccc------cccccceEE-----EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 288 LCDQYGNVA-ALHSRDCS------VQRRHQKII-----EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 288 l~D~~G~vi-~l~~RdcS------vqrr~qKii-----eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
+.++.+..+ .+....+. .|++..|.. ...|+. ++++..+++.+.|.++++++|++|.+++||++++
T Consensus 220 l~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~- 297 (346)
T 3se7_A 220 MGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTE- 297 (346)
T ss_dssp EEETTEEEECCCEEECCC--------------CGGGSCEESSCC-CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECT-
T ss_pred EecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeC-
Confidence 998654222 12121111 233344443 234776 8899999999999999999999999999999994
Q ss_pred CCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|||++.. .|....++|+|+.++..++
T Consensus 298 ~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~l 336 (346)
T 3se7_A 298 DGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRL 336 (346)
T ss_dssp TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 5789999999998753 2444457899999876654
No 66
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.92 E-value=1.6e-24 Score=269.29 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=182.8
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|+|+|.. |...|+..++..|+..|++++|+++.++..+.||..++++++++|||+|+|..
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~---------------- 160 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHT---------------- 160 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEE----------------
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEE----------------
Confidence 5799999986 67779999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCHH----HHHHHhhccCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 209 DVYRQACVYTTE----EAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 209 ~~~~~~~V~s~e----ea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.+ .+.++++++||| +||||..|+||+||.+|++.+||.++++.+... +.+++||+|++| +|+
T Consensus 161 -------~~~~~~~~~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~ 230 (372)
T 3tqt_A 161 -------LSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY--DDRLMVEPRIRG-REI 230 (372)
T ss_dssp -------ECTTSCCTTHHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCS-EEE
T ss_pred -------EechhhhhhHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEECCCCC-EEE
Confidence 12211 234567789999 999999999999999999999999999887643 578999999985 999
Q ss_pred eEEEEEcCCCCEEEeeccc-----cccccccc--e-EEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 284 EVQLLCDQYGNVAALHSRD-----CSVQRRHQ--K-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rd-----cSvqrr~q--K-iieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
+|.+++|+...+....... +..+.+++ . .....|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 231 ~v~vl~~~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~- 308 (372)
T 3tqt_A 231 ECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTP- 308 (372)
T ss_dssp EEEEEESSSCEECCCEEEECC---------------CEEESCCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred EEEEEeCCCceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeC-
Confidence 9999998632111111110 11111111 1 23445776 8999999999999999999999999999999984
Q ss_pred CCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|||++-+ .|..-.++|+|++++..++
T Consensus 309 dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 309 NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHH
Confidence 6889999999999844 3555567899998876554
No 67
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.92 E-value=8.5e-25 Score=266.68 Aligned_cols=231 Identities=22% Similarity=0.261 Sum_probs=189.9
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+.++|+|+|+. |...|+..+...|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 138 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVA--------------- 138 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 56799999987 77789888999999999999999999999999999999999999999999865
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+.+.++ +.. ++|||+||||..|+||+|+.+|++.+||.++++.+... +.+++||+|++|.+|+++.+
T Consensus 139 --------~~~~~~--~~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~~v~v 205 (322)
T 2fb9_A 139 --------VRKGEP--PVV-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFRY--DEKAVVEKALSPVRELEVGV 205 (322)
T ss_dssp --------EETTSC--CCC-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCSSCEEEEEEE
T ss_pred --------EECchh--hhh-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCeEEEEeCCCCCeeEEEEE
Confidence 112211 112 78999999999999999999999999999999887642 46899999998768999999
Q ss_pred EEcCCCCEEEeeccc--cccccccceEEE-----eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 288 LCDQYGNVAALHSRD--CSVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 288 l~D~~G~vi~l~~Rd--cSvqrr~qKiie-----eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
++++.++++...... +.+.+...|... ..|+. ++++..+++.+.|.++++++|+.|.++|||+++ +|++|
T Consensus 206 l~~~~~~~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~--~g~~~ 282 (322)
T 2fb9_A 206 LGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFLA--EGELY 282 (322)
T ss_dssp ESSSSCEEEEEEEEEEECCEEETTTEEECCEEEEESSCC-CCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE--TTEEE
T ss_pred EeCCCceEeeeEEEeeCCCccCHHHcccCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE--CCcEE
Confidence 998765555444332 234444445432 35776 788899999999999999999999999999998 78999
Q ss_pred EEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 361 FLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 361 fLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
|+|+|||++... |....++|+|++++..++
T Consensus 283 vlEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 316 (322)
T 2fb9_A 283 LNELNTIPGFTPTSMYPRLFEAGGVAYPELLRRL 316 (322)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEEECCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 999999998752 333457899988887654
No 68
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.92 E-value=1.6e-24 Score=270.17 Aligned_cols=235 Identities=17% Similarity=0.203 Sum_probs=181.3
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCC-CCcCCCCCCCccCCCCCcccccCc
Q 000086 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAAN-VPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 131 ~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aG-VPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++|.|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++| ||+|+|.. +..
T Consensus 119 ~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~-------------~~~ 185 (383)
T 3k3p_A 119 EEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVA-------------LIE 185 (383)
T ss_dssp TTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEE-------------EET
T ss_pred CCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEE-------------EeC
Confidence 789999965 556689999999999999999999999999999999999999999 99999875 000
Q ss_pred ccccccccCCH-HHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 209 DVYRQACVYTT-EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 209 ~~~~~~~V~s~-eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
..+. +++.++++++||||||||..|+||+||++|++.+||.++++.+... +..++||+|++| +|++|.+
T Consensus 186 -------~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~--~~~vlVEe~I~G-~E~~v~v 255 (383)
T 3k3p_A 186 -------GEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY--DSRVLIEQGVDA-REIEVGI 255 (383)
T ss_dssp -------TSCHHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEEEEEE
T ss_pred -------ccchhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeEEEEcCCCC-eEEEEEE
Confidence 1122 5667778899999999999999999999999999999999887644 468999999985 8999999
Q ss_pred EEcCCCCEEEeecc--ccccccccceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 288 LCDQYGNVAALHSR--DCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 288 l~D~~G~vi~l~~R--dcSvqrr~qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
++|+...+...... ++.+.....|. ....|+. ++++..+++.+.|.++++++|++|.++|||++++ +|++|
T Consensus 256 l~d~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-~g~~~ 333 (383)
T 3k3p_A 256 LGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVY 333 (383)
T ss_dssp EESSSCEECCCEEEC-----------------CEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEE
T ss_pred EeCCCeeEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEEC-CCCEE
Confidence 99854333222221 12233333333 3346877 8999999999999999999999999999999984 68899
Q ss_pred EEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 361 FLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 361 fLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
|+|+|||++-+ .|..-.++|+|++++..++
T Consensus 334 vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~l 367 (383)
T 3k3p_A 334 LNELNTMPGFTQWSMYPLLWENMGLSYSVLIEEL 367 (383)
T ss_dssp EEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 99999999843 3555567899998876654
No 69
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.92 E-value=1.1e-24 Score=257.97 Aligned_cols=270 Identities=14% Similarity=0.158 Sum_probs=192.6
Q ss_pred EEEECc--hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 51 ILIANN--GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 51 ILIan~--G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
|+|++. +..+..++++++++|++++ ++.. .+ .. ...+|. + ..
T Consensus 2 I~il~~~~~~~~~~~~~a~~~~G~~v~---------~~~~-~~---~~--~~~~~~------------~---------~~ 45 (280)
T 1uc8_A 2 LAILYDRIRPDERMLFERAEALGLPYK---------KVYV-PA---LP--MVLGER------------P---------KE 45 (280)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTCCEE---------EEEG-GG---CC--EETTBC------------C---------GG
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCcEE---------EEeh-hh---ce--eeccCC------------C---------cc
Confidence 677774 6788999999999999985 2222 11 11 112221 1 12
Q ss_pred HcCCC-EEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVD-AVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vD-aV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++| ++++.+|.. ++..++..|++.|+++++ +++++..+.||..++++++++|||+|+|..
T Consensus 46 ~~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~--------------- 108 (280)
T 1uc8_A 46 LEGVTVALERCVSQS-RGLAAARYLTALGIPVVN-RPEVIEACGDKWATSVALAKAGLPQPKTAL--------------- 108 (280)
T ss_dssp GTTCCEEEECCSSHH-HHHHHHHHHHHTTCCEES-CHHHHHHHHBHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred cCCCCEEEECCccch-hhHHHHHHHHHCCCceeC-CHHHHHHhCCHHHHHHHHHHcCcCCCCeEe---------------
Confidence 24689 788876622 455677888889999985 599999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH--HhhCCCCcEEEEEeccc-cceee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV--QGEVPGSPIFIMKVASQ-SRHLE 284 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~--~~e~~~~~i~VEeyI~g-~reie 284 (2304)
+.+.+++.++++++|||+|+||..|+||+|++++++.+++..+++.+ .......++++|+|+++ +++++
T Consensus 109 --------~~~~~~~~~~~~~~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~ 180 (280)
T 1uc8_A 109 --------ATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIR 180 (280)
T ss_dssp --------ESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEE
T ss_pred --------eCCHHHHHHHHHHhCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEE
Confidence 67888998888999999999999999999999999999999988776 22222568999999987 57777
Q ss_pred EEEEEcCCCCEEEeecccccccccc-ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRH-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~-qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
+.++. |.++....+...-.+.+ ...-...|.. ++ +++.+.+.++++++|+ |.+++||++++ +++||+|
T Consensus 181 v~v~~---~~~~~~~~~~~~~~~~~~~~g~~~~p~~-l~----~~~~~~~~~~~~~lg~-g~~~vD~~~~~--~g~~~iE 249 (280)
T 1uc8_A 181 VFVVG---ERAIAAIYRRSAHWITNTARGGQAENCP-LT----EEVARLSVKAAEAVGG-GVVAVDLFESE--RGLLVNE 249 (280)
T ss_dssp EEEET---TEEEEEEEC--------------CEECC-CC----HHHHHHHHHHHHHTTC-SEEEEEEEEET--TEEEEEE
T ss_pred EEEEC---CEEEEEEEEecCCccccccCCccccCCC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEeC--CCeEEEE
Confidence 77763 34443322210000000 0000012433 33 3889999999999999 99999999994 4599999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCC
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~ 394 (2304)
+|||++..+ ++.++|+|+++++++.++|.
T Consensus 250 iN~r~g~~~--~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 250 VNHTMEFKN--SVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp EETTCCCTT--HHHHHCCCHHHHHHHHHHHT
T ss_pred EeCCCCccc--hheeeccCHHHHHHHHHHhh
Confidence 999998765 57789999999999998874
No 70
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.90 E-value=2.7e-23 Score=252.77 Aligned_cols=260 Identities=12% Similarity=0.107 Sum_probs=182.9
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~---~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.||||+|+| .+..++++++++|++++ ++ |...+.+ ....+|+.+.++. |.| + .
T Consensus 3 m~Ililg~g-~~~~l~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~------~~d-~---~ 58 (334)
T 2r85_A 3 VRIATYASH-SALQILKGAKDEGFETI-----------AF--GSSKVKPLYTKYFPVADYFIEEK------YPE-E---E 58 (334)
T ss_dssp SEEEEESST-THHHHHHHHHHTTCCEE-----------EE--SCGGGHHHHHTTSCCCSEEECSS------CCH-H---H
T ss_pred eEEEEECCh-hHHHHHHHHHhCCCEEE-----------EE--ECCCCCcccccccccCceEecCC------cCh-H---H
Confidence 489999999 99999999999999985 33 2222222 3456788877642 322 2 2
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+++ .+|+|+|+.++... ...+.|++.|++++ |++++++.+.||..++++++++|||+|+| .
T Consensus 59 l~~--~~d~i~~~~e~~~~--~~~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~-~------------- 119 (334)
T 2r85_A 59 LLN--LNAVVVPTGSFVAH--LGIELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV-Y------------- 119 (334)
T ss_dssp HHH--TTEEECCCTTHHHH--HCHHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB-C-------------
T ss_pred hcc--cCCEEEECcchhhh--hHHHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc-c-------------
Confidence 333 35888877432211 12345677899876 56789999999999999999999999997 3
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh---CCCCcEEEEEeccccce
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE---VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e---~~~~~i~VEeyI~g~re 282 (2304)
.+. ++++||+||||..|+||+||++|++.+++..+++.+... ....+++||+|++| .+
T Consensus 120 -----------~~~-------~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e 180 (334)
T 2r85_A 120 -----------EDP-------DDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VP 180 (334)
T ss_dssp -----------SCG-------GGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EE
T ss_pred -----------CCh-------HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ce
Confidence 111 235799999999999999999999999999999887643 12468999999987 67
Q ss_pred eeEEEEEcCCCC-EE--Eeeccccccc-----c----c-c----ceEEEeC---CCCCCCHHHHHHHHHHHHHHHHHC--
Q 000086 283 LEVQLLCDQYGN-VA--ALHSRDCSVQ-----R----R-H----QKIIEEG---PITVAPLETVKKLEQAARRLAKCV-- 340 (2304)
Q Consensus 283 ieVqvl~D~~G~-vi--~l~~RdcSvq-----r----r-~----qKiieea---Pa~~l~~e~~~~m~e~A~rlakal-- 340 (2304)
+++.++.+..++ +- ...+| +.++ + + . ....... |+. ++++..+++.+.+.++++++
T Consensus 181 ~~~~~~~~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~-l~~~~~~~i~~~a~~~~~~l~~ 258 (334)
T 2r85_A 181 VYPHYFYSKVREELELMSIDRR-YESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIV-LRESLLMDVIEAGERVVKAAEE 258 (334)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE-EEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECC-CCGGGHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcCceeeeeeeccE-EEeccCcccccccccccccccCCceeeeCCCCcc-cCHHHHHHHHHHHHHHHHHHHh
Confidence 787777664333 11 11111 1110 0 0 0 0001112 665 77888899999999999999
Q ss_pred ---CceeeeEEEEEEEccCCcEEEEEeccCCCCCcc
Q 000086 341 ---NYVGAATVEYLYSMETGEYYFLELNPRLQVEHP 373 (2304)
Q Consensus 341 ---Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehp 373 (2304)
++.|.+++||++++ +|++||+|+|||++++.+
T Consensus 259 ~~~~~~G~~~vd~~~~~-~g~~~viEiN~R~g~~~~ 293 (334)
T 2r85_A 259 LMGGLWGPFCLEGVFTP-DLEFVVFEISARIVAGTN 293 (334)
T ss_dssp HSSCCCEEEEEEEEECT-TSCEEEEEEECSCCGGGG
T ss_pred hcccccccEEEEEEECC-CCCEEEEEEeCCcCCCce
Confidence 89999999999984 678999999999998643
No 71
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.90 E-value=3.6e-23 Score=256.76 Aligned_cols=232 Identities=14% Similarity=0.142 Sum_probs=182.9
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 131 ~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
++|+|+|.. |...|+..++..|+..|++++|+++.++..+.||..++++++++|||+|+|..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~----------------- 169 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVL----------------- 169 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEE-----------------
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEE-----------------
Confidence 689999974 56678888999999999999999999999999999999999999999999865
Q ss_pred cccccccCCHH--HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee-EE
Q 000086 210 VYRQACVYTTE--EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE-VQ 286 (2304)
Q Consensus 210 ~~~~~~V~s~e--ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reie-Vq 286 (2304)
+.+.+ ++.+ ++++|||+||||..|+||.|+.+|++.+||.++++.+... +.+++||+|++|.+|++ +.
T Consensus 170 ------~~~~~~~~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~--~~~vlVEe~I~G~~E~svi~ 240 (367)
T 2pvp_A 170 ------LNEKNRANALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY--SKEVLIEPFIQGVKEYNLAG 240 (367)
T ss_dssp ------ECTTTGGGHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT--CSCEEEEECCTTCEEEEEEE
T ss_pred ------EeCCchHHHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeCCCCCceeeEEE
Confidence 33333 5555 6789999999999999999999999999999999887642 56899999998768955 33
Q ss_pred EEEcCCCCEEEeecccc---ccccccceEEE-----eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 287 LLCDQYGNVAALHSRDC---SVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 287 vl~D~~G~vi~l~~Rdc---Svqrr~qKiie-----eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
+..+ |+++....+-. .+.....|... ..|+. ++++..+++.+.|.++++++|+.|.++|||+++ +|+
T Consensus 241 v~v~--g~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~g~ 315 (367)
T 2pvp_A 241 CKIK--KDFCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--ENE 315 (367)
T ss_dssp EEET--TEEEEEEEEETTTTEEECCCCSSCCSCCCSCCCCC-CCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--TTE
T ss_pred EEEC--CEEEEEEEEEecCCceEcccccccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--CCe
Confidence 3333 55443322111 12222233332 24665 889999999999999999999999999999998 789
Q ss_pred EEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+||+|+|||++.+. .+ +.. |++++..++..+.++.
T Consensus 316 ~~vlEiN~rpg~t~-~s-~~p--~~~~l~~~li~~~~~~ 350 (367)
T 2pvp_A 316 VYLNEINPIPGSLA-NY-LFD--DFKTTLENLAQSLPKT 350 (367)
T ss_dssp EEEEEEESSCGGGG-GG-GSS--SHHHHHHHHHHHCC--
T ss_pred EEEEEEeCCCCCCc-cc-ccC--CHHHHHHHHHhCcccc
Confidence 99999999998742 11 112 8999999998887665
No 72
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.88 E-value=1.2e-22 Score=250.90 Aligned_cols=287 Identities=11% Similarity=0.134 Sum_probs=195.0
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCC
Q 000086 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGG 111 (2304)
Q Consensus 35 ~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~---~ir~ADe~v~vp~~ 111 (2304)
+.++++...-.. .+|+|+|+| .|+.++++++++||+|+ ++ |...+++ ....||+++.++
T Consensus 7 ~~~~~~~~~~~~--~~I~ilGs~-l~~~l~~aAk~lG~~vi-----------~v--d~~~~~p~~~~~~~ad~~~~~d-- 68 (361)
T 2r7k_A 7 ILEIFDKYNKDE--ITIATLGSH-TSLHILKGAKLEGFSTV-----------CI--TMKGRDVPYKRFKVADKFIYVD-- 68 (361)
T ss_dssp HHHHHTTSCTTS--CEEEEESST-THHHHHHHHHHTTCCEE-----------EE--ECTTSCHHHHHTTCCSEEEECS--
T ss_pred HHHHHHhccccC--CEEEEECcH-HHHHHHHHHHHCCCEEE-----------EE--ECCCCCCcccccccCceEEECC--
Confidence 456666533233 459999999 99999999999999985 33 3333445 667899999874
Q ss_pred CCCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHH-HCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcC
Q 000086 112 TNNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLS-TKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2304)
Q Consensus 112 ~~~~sY~dv--d~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~-~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtp 188 (2304)
.|.|+ +.+++.+.+.. +.|.|-..+. . ......++ +.|++++| +..+++..+||...+++++++|||||
T Consensus 69 ----~~~d~~~~~~l~~l~~~~-~vV~pe~~~v-~-~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp 140 (361)
T 2r7k_A 69 ----NFSDIKNEEIQEKLRELN-SIVVPHGSFI-A-YCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVP 140 (361)
T ss_dssp ----SGGGGGSHHHHHHHHHTT-EEECCBHHHH-H-HHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCC
T ss_pred ----CcccccHHHHHHHHHHcC-CEEEeCchhh-h-HHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCC
Confidence 34452 45555555553 5544321100 0 00122334 78998886 88889999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--
Q 000086 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV-- 266 (2304)
Q Consensus 189 p~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~-- 266 (2304)
+|.. +.++ ++||+||||..++||||+++|+|.+|+.++++.+....
T Consensus 141 ~~~~-------------------------~~~e-------~~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~ 188 (361)
T 2r7k_A 141 KKYE-------------------------SPED-------IDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGIL 188 (361)
T ss_dssp CEES-------------------------SGGG-------CCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSC
T ss_pred CEeC-------------------------CHHH-------cCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcccc
Confidence 8632 2222 36999999999999999999999999999998874321
Q ss_pred ---CCCcEEEEEeccccceeeEEEEEcCCCC---EEEeeccc-------cccccccc--------eEEE-eCCCCCCCHH
Q 000086 267 ---PGSPIFIMKVASQSRHLEVQLLCDQYGN---VAALHSRD-------CSVQRRHQ--------KIIE-EGPITVAPLE 324 (2304)
Q Consensus 267 ---~~~~i~VEeyI~g~reieVqvl~D~~G~---vi~l~~Rd-------cSvqrr~q--------Kiie-eaPa~~l~~e 324 (2304)
.+.+++||||++| .++++..+..--.+ ++.+..|- |.+..+.| ..+. ..|+. ++++
T Consensus 189 ~~~~~~~viIEEfl~G-~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~-l~~~ 266 (361)
T 2r7k_A 189 TDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV-IRES 266 (361)
T ss_dssp CHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC-CCGG
T ss_pred ccCCCCeEEEEeccce-EEeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEEecCcCCc-CCHH
Confidence 1247999999987 46676666553222 22222220 10100111 1111 12776 7888
Q ss_pred HHHHHHHHHHHHHHHC------CceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHH
Q 000086 325 TVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLP 384 (2304)
Q Consensus 325 ~~~~m~e~A~rlakal------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~ 384 (2304)
+.+++.+.+.++++++ |+.|++++||++++ +|+++|+|+|||++|..++.-. |.+..
T Consensus 267 ~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg~i~V~EIapR~gGg~~~~~~--g~p~~ 329 (361)
T 2r7k_A 267 LLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NLELVVFEMSARVDGGTNSFMN--GGPYS 329 (361)
T ss_dssp GHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TSCEEEEEEESSBCGGGGGGTT--CCTTH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CCCEEEEEEcCCCCCCcccccC--CCCch
Confidence 8999999999999998 89999999999983 6789999999999998554421 55533
No 73
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.85 E-value=3.5e-21 Score=233.31 Aligned_cols=218 Identities=17% Similarity=0.107 Sum_probs=163.5
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~ 193 (2304)
++| .+.+.+++++ +|++++. +|.......+.+.++..| .++|+++++++.+.||..+++++++ |||+|+|..
T Consensus 57 ~df--~~~l~~~~~~--~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~- 129 (305)
T 3df7_A 57 VDS--MDSMEKYLEK--SDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL- 129 (305)
T ss_dssp BCC--GGGHHHHHTT--CSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-
T ss_pred cCH--HHHHHHHHHh--cCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-
Confidence 355 3567777765 4666653 232222122345555567 7999999999999999999999999 999999642
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEE
Q 000086 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFI 273 (2304)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~V 273 (2304)
.++|||+||||..|+||+|++++++ .+.++++
T Consensus 130 ---------------------------------~~~~~P~vvKP~~g~gs~Gv~~v~~---------------~~~~~lv 161 (305)
T 3df7_A 130 ---------------------------------RPLDCKFIIKPRTACAGEGIGFSDE---------------VPDGHIA 161 (305)
T ss_dssp ---------------------------------SCCSSSEEEEESSCC----CBCCSS---------------CCTTEEE
T ss_pred ---------------------------------ccCCCCEEEEeCCCCCCCCEEEEec---------------CCCCEEE
Confidence 2579999999999999999999998 3578999
Q ss_pred EEeccccceeeEEEEEcCCCCEEEeecccccccccc-ceE-EEeCCCCCCCHHHHHHHHHHHHHHHHHC-CceeeeEEEE
Q 000086 274 MKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH-QKI-IEEGPITVAPLETVKKLEQAARRLAKCV-NYVGAATVEY 350 (2304)
Q Consensus 274 EeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~-qKi-ieeaPa~~l~~e~~~~m~e~A~rlakal-Gy~Ga~tVEf 350 (2304)
|+|++| +|++|.++.++ .+..+.. ..+... .+. -...|+. ++++..+++.+.|.++++++ |+.|.+++||
T Consensus 162 Ee~I~G-~e~sv~v~~g~--~~~~~~~---~~~~~~~~~~~g~~~p~~-l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~ 234 (305)
T 3df7_A 162 QEFIEG-INLSVSLAVGE--DVKCLSV---NEQIINNFRYAGAVVPAR-ISDEVKREVVEEAVRAVECVEGLNGYVGVDI 234 (305)
T ss_dssp EECCCS-EEEEEEEEESS--SEEEEEE---EEEEEETTEEEEEEESCC-CCHHHHHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred EeccCC-cEEEEEEEeCC--eEEEEEE---eeEeccCceeccccccCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEE
Confidence 999985 89999999853 3433321 111111 111 1234665 78899999999999999999 9999999999
Q ss_pred EEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 351 LYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
+++ |++||+|+|||+++++...+.++|+|++++++++ +.+.+..
T Consensus 235 ~~~---~~~~viEiNpR~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~~ 278 (305)
T 3df7_A 235 VYS---DQPYVIEINARLTTPVVAFSRAYGASVADLLAGG--EVKHVRR 278 (305)
T ss_dssp EES---SSEEEEEEESSCCGGGGGHHHHHSCCHHHHHTTC--CCCCCCC
T ss_pred EEC---CCEEEEEEcCCCCCCHHHHHHHHCCCHHHHHHhc--cCCCCch
Confidence 995 6799999999999998777889999999999988 5554443
No 74
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.84 E-value=8.4e-22 Score=239.28 Aligned_cols=249 Identities=10% Similarity=0.107 Sum_probs=168.2
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~---~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+|.|+|+| .|+.++++|+++|++|+ ++ |...+++ ....||+++.++. |.| +
T Consensus 4 ~I~~lGsg-l~~~~~~aAk~lG~~vi-----------v~--d~~~~~p~~~a~~~ad~~~~~~~------~~d------l 57 (320)
T 2pbz_A 4 IVSTIASH-SSLQILLGAKKEGFKTR-----------LY--VSPKRRPFYSSLPIVDDLVVAEE------MTS------I 57 (320)
T ss_dssp CEEEESST-THHHHHHHHHHTTCCEE-----------EE--ECTTTHHHHHTCTTCSEEEECSC------SCC------T
T ss_pred EEEEEcCH-hHHHHHHHHHHCCCEEE-----------EE--ECCCCCccchhhhcCCeEEECCc------HHH------H
Confidence 49999999 99999999999999985 34 4444555 7779999999842 444 2
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
++ ..|.|.|-..+.. ....+.|++.|+++. |+.++++...||...+++++++|||+|+|..
T Consensus 58 ~~--~~dvitpe~e~v~--~~~l~~le~~~~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~-------------- 118 (320)
T 2pbz_A 58 LN--DDGIVVPHGSFVA--YLGIEAIEKAKARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVVE-------------- 118 (320)
T ss_dssp TC--CSSBCCCBTTHHH--HSCHHHHHTCCSCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC--------------
T ss_pred Hh--cCCEEEecccchh--HHHHHHHHHcCCCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC--------------
Confidence 22 3477765533221 113345678888876 8889999999999999999999999999763
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
++ ++ +++|||||||..|+||+|+++++| +|+..+++.+. .+++||||+++.+ +.+.
T Consensus 119 ~e------------e~-----~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~-----~~~IiEEfI~g~~-~~~~ 174 (320)
T 2pbz_A 119 PE------------DA-----KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTLE-----EPYRVERFIPGVY-LYVH 174 (320)
T ss_dssp SC------------CC-----CSSCCEEEECC------------C-EECSCCCC---------CCEEEECCCSCE-EEEE
T ss_pred Hh------------Hc-----CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcC-----CCEEEEeeeceEe-ccee
Confidence 01 11 489999999999999999999999 99987665441 4799999999854 4666
Q ss_pred EEEc-CCCCEEEeeccccccccccce---------E-EEeCCCCCCCHHHHHHHHHHHHHHHHHC------CceeeeEEE
Q 000086 287 LLCD-QYGNVAALHSRDCSVQRRHQK---------I-IEEGPITVAPLETVKKLEQAARRLAKCV------NYVGAATVE 349 (2304)
Q Consensus 287 vl~D-~~G~vi~l~~RdcSvqrr~qK---------i-ieeaPa~~l~~e~~~~m~e~A~rlakal------Gy~Ga~tVE 349 (2304)
++.+ -.|++..++.++--..+.... . ....|+. +++++.+++.+.+.++++++ |+.|++++|
T Consensus 175 ~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~~~~~~~G~~P~~-~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE 253 (320)
T 2pbz_A 175 FFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAIA-LRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH 253 (320)
T ss_dssp EEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEEECE-ECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE
T ss_pred EEeccccCceeEEEecceEEEECCeeecccCCCceeeecCCCCc-cCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE
Confidence 6665 345554443322100011100 1 1112665 66778899999999999998 999999999
Q ss_pred EEEEccCCcEEEEEeccCCCCC
Q 000086 350 YLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqge 371 (2304)
++ .++++||+|||||++|+
T Consensus 254 --~~-~dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 254 --FA-YDGSFKAIGIASRIDGG 272 (320)
T ss_dssp --EE-CSSSCEEEEEESSBCSG
T ss_pred --Ec-CCCcEEEEEecCCCCCC
Confidence 45 36789999999999887
No 75
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=99.80 E-value=3.2e-19 Score=214.68 Aligned_cols=197 Identities=18% Similarity=0.123 Sum_probs=153.1
Q ss_pred ccccC----CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------------------CCCeEEEEE
Q 000086 1890 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------------------WARTVVTGR 1938 (2304)
Q Consensus 1890 ~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------------------~a~~vVtG~ 1938 (2304)
.++|. ..+++|++|+. |||+|||.|+.+. ++++||||+
T Consensus 44 ~v~~~~~~~~r~~arerI~~-----------L~D~gsF~E~~~~~~~~~~~~f~d~~~y~~~l~~~~~~t~~~~avvtG~ 112 (304)
T 2f9y_B 44 EVCPKCDHHMRMTARNRLHS-----------LLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMK 112 (304)
T ss_dssp TBCTTTCCBCCCCHHHHHHH-----------HSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHH-----------HCCCCcEEEECCccccCCccccccccChHHHHHHHHhccCCCCcEEEEE
Confidence 45663 78999999997 8999999999753 568999999
Q ss_pred EEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhh
Q 000086 1939 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 2018 (2304)
Q Consensus 1939 arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~ 2018 (2304)
|+|+|+||+|+++|++++ ||++++..++|++|+++.|.++++|+|+|.|++|+..+...
T Consensus 113 g~i~G~~V~v~a~d~~~~---------------------ggslg~~~~~Ki~r~~e~A~~~~~PvI~l~~sGGarlqeg~ 171 (304)
T 2f9y_B 113 GTLYGMPVVAAAFEFAFM---------------------GGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEAL 171 (304)
T ss_dssp CEETTEECBEEEECTTST---------------------TTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCGGGTH
T ss_pred EEECCEEEEEEEEcCccc---------------------cCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCCCcCHHHHH
Confidence 999999999999998766 99999999999999999999999999999999986652211
Q ss_pred hhhhHHHHHHHHHHHHH---cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhh
Q 000086 2019 LFEGILQAGSTIVENLR---TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKE 2095 (2304)
Q Consensus 2019 e~~gilk~ga~iv~al~---~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~ 2095 (2304)
+ -+..+++++.++. ...+|+|++|. |.+.||+.+.+.. ..|+ ++|+|+|++++++|+.+..+...+
T Consensus 172 ~---~l~~~~~i~~al~~~~~~~vP~IavV~--G~~~GGg~a~~a~--~~D~--via~~~A~i~v~Gp~~i~~~ig~~-- 240 (304)
T 2f9y_B 172 M---SLMQMAKTSAALAKMQERGLPYISVLT--DPTMGGVSASFAM--LGDL--NIAEPKALIGFAGPRVIEQTVREK-- 240 (304)
T ss_dssp H---HHHHHHHHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGGG--CCSE--EEECTTCBEESSCHHHHHHHHTSC--
T ss_pred H---HHHHHHHHHHHHHHHhcCCCCEEEEEE--CCCccHHHHHHHh--cCCE--EEEeCCcEEEeecHHHHHHHhCcc--
Confidence 1 1345677888874 45999999999 6677776332221 2477 999999999999998875442210
Q ss_pred HHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccc
Q 000086 2096 LLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDK 2175 (2304)
Q Consensus 2096 ~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~ 2175 (2304)
++ +...++..+.+.|+||.||+..+
T Consensus 241 -------------------------l~------------------------------~~~~~Ae~~~~~Glvd~Vv~~~e 265 (304)
T 2f9y_B 241 -------------------------LP------------------------------PGFQRSEFLIEKGAIDMIVRRPE 265 (304)
T ss_dssp -------------------------CC------------------------------TTTTBHHHHGGGTCCSEECCHHH
T ss_pred -------------------------CC------------------------------cccCCHHHHHhcCCccEEeCcHH
Confidence 11 01136778889999999999888
Q ss_pred hHHHHHHHH
Q 000086 2176 SRSFFCRRL 2184 (2304)
Q Consensus 2176 tR~~~~~~L 2184 (2304)
.|..+...|
T Consensus 266 l~~~l~~ll 274 (304)
T 2f9y_B 266 MRLKLASIL 274 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777654433
No 76
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.74 E-value=2.8e-18 Score=228.20 Aligned_cols=241 Identities=14% Similarity=0.059 Sum_probs=183.3
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEE-------CCCHHHHHHhcCHHHHHHHHHHCCCCcCCC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL-------GPPATSMAALGDKIGSSLIAQAANVPTLPW 190 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fi-------GPs~eam~~lgDK~~sr~laq~aGVPtpp~ 190 (2304)
.+.+.|+++|++.++|+++.| ++..|.+.+...++.++ ||+..++..++||..++++++++|||+|+|
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg-----~e~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~ 507 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILD-----ENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQS 507 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-----TTTTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCE
T ss_pred CCHHHHHHHHHHhCCCEEEEC-----CCHHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCE
Confidence 357899999999999999865 55556655555555554 456799999999999999999999999998
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHh-hccCCcEEEeecCCCCCcCeEEE----CCHHHHHHHHHHHHhh
Q 000086 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKV----HNDDEVRALFKQVQGE 265 (2304)
Q Consensus 191 s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V----~s~eEL~~a~~~~~~e 265 (2304)
.. +.+.+++.+++ +.+||||||||..|+||+||+++ ++.+++.++++.+...
T Consensus 508 ~~-----------------------~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~ 564 (757)
T 3ln7_A 508 VE-----------------------FTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE 564 (757)
T ss_dssp EE-----------------------ESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH
T ss_pred EE-----------------------ECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc
Confidence 75 67888887776 78999999999999999999999 8999999999887654
Q ss_pred CCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccc-c------------------ccc---cc-------------
Q 000086 266 VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS-V------------------QRR---HQ------------- 310 (2304)
Q Consensus 266 ~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcS-v------------------qrr---~q------------- 310 (2304)
+..++||+|++| +|++|.++++ +++....|... + .+| |.
T Consensus 565 --~~~vlVEefI~G-~Ei~v~Vlgg---kvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~ 638 (757)
T 3ln7_A 565 --DKEVMVEDYLVG-TEYRFFVLGD---ETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQ 638 (757)
T ss_dssp --CSSEEEEECCCS-EEEEEEEETT---EEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHH
T ss_pred --CCcEEEEEcCCC-cEEEEEEECC---EEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHH
Confidence 568999999986 8999999864 66665554321 0 011 00
Q ss_pred ------------------eEE--------EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc-------cCC
Q 000086 311 ------------------KII--------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-------ETG 357 (2304)
Q Consensus 311 ------------------Kii--------eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~-------~~g 357 (2304)
++. .++-+...+.++.+++.+.|.++++++|+. .+.||++.+. +.+
T Consensus 639 ~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~ 717 (757)
T 3ln7_A 639 LQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLT 717 (757)
T ss_dssp HHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTT
T ss_pred HHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCC
Confidence 000 001112234456788999999999999985 7789999872 235
Q ss_pred cEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcC
Q 000086 358 EYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMG 393 (2304)
Q Consensus 358 ~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G 393 (2304)
++.+||+|++++-. |...-..+|.|+....+.....
T Consensus 718 ~~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~lfp 754 (757)
T 3ln7_A 718 SWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKMLFP 754 (757)
T ss_dssp TCEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHHCT
T ss_pred CeEEEEEcCCcchhhhhccccCCCCchHHHHHHHhcC
Confidence 78999999998854 3222235799999998887653
No 77
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.72 E-value=1.5e-17 Score=199.90 Aligned_cols=285 Identities=11% Similarity=0.049 Sum_probs=178.7
Q ss_pred cEEEEECch--------HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccE-EEEccCCCCCCCccC
Q 000086 49 HSILIANNG--------MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ-FVEVPGGTNNNNYAN 119 (2304)
Q Consensus 49 ~kILIan~G--------~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe-~v~vp~~~~~~sY~d 119 (2304)
.||+|+..| ..+..++++++++||+++ +..+.+..... ....++. .+.+++. ...|..
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~----------~~d~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 68 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELH----------YMEMGDLYLIN-GEARAHTRTLNVKQN--YEEWFS 68 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEE----------EECGGGEEEET-TEEEEEEEEEEECSC--SSCCEE
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEE----------EEchhHeEEEC-CeEEEEEeeeEeccC--ccccee
Confidence 367777766 357889999999999985 12222111000 0001221 2222211 112211
Q ss_pred HH--HHHHHHHHcCCCEEEeCCCcCCC-----CCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCC
Q 000086 120 VQ--LIVEMAEMTRVDAVWPGWGHASE-----IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2304)
Q Consensus 120 vd--~Ii~iA~~~~vDaV~pG~G~~SE-----n~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~ 192 (2304)
.+ .+. ...++|+|+++.+...+ ...+.+.|+..|+.++ ++++++..+.||..++++++ |+|+|..
T Consensus 69 ~~~~~~~---~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~~ 140 (316)
T 1gsa_A 69 FVGEQDL---PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETLV 140 (316)
T ss_dssp EEEEEEE---EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEEE
T ss_pred ccCcccc---ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeEE
Confidence 00 001 11368999987542211 1134566667898876 78999999999999999988 9999765
Q ss_pred CCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEEC-CHHHHHHHHHHHHhhCCCCcE
Q 000086 193 SHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVH-NDDEVRALFKQVQGEVPGSPI 271 (2304)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~-s~eEL~~a~~~~~~e~~~~~i 271 (2304)
+.+.+++.++++++| |+|+||..|+||+||++++ +.+++..+++.+.. ....++
T Consensus 141 -----------------------~~~~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-~~~~~~ 195 (316)
T 1gsa_A 141 -----------------------TRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-HGTRYC 195 (316)
T ss_dssp -----------------------ESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-TTTSCE
T ss_pred -----------------------eCCHHHHHHHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-cCCceE
Confidence 678889888888899 9999999999999999999 88999888776542 123689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEE-eeccccc-c-ccc--cceEEEeCCCCCCCHHHHHHHHHHHHHHHHH---CCce
Q 000086 272 FIMKVASQSRHLEVQLLCDQYGNVAA-LHSRDCS-V-QRR--HQKIIEEGPITVAPLETVKKLEQAARRLAKC---VNYV 343 (2304)
Q Consensus 272 ~VEeyI~g~reieVqvl~D~~G~vi~-l~~RdcS-v-qrr--~qKiieeaPa~~l~~e~~~~m~e~A~rlaka---lGy~ 343 (2304)
++|+|+++.+++++.++..+ |+++. ...|... . .+. |.. -...|.. +++ ++.+.+.+++++ +|+
T Consensus 196 lvqe~i~~~~~~~~~v~~~~-g~~~~~~~~r~~~~~~~~~~~~~g-g~~~~~~-~~~----~~~~~a~~~~~~l~~~g~- 267 (316)
T 1gsa_A 196 MAQNYLPAIKDGDKRVLVVD-GEPVPYCLARIPQGGETRGNLAAG-GRGEPRP-LTE----SDWKIARQIGPTLKEKGL- 267 (316)
T ss_dssp EEEECCGGGGGCEEEEEEET-TEECSEEEEEECCSSCSCCCGGGT-CEEEEEE-CCH----HHHHHHHHHHHHHHHTTC-
T ss_pred EEecccCCCCCCCEEEEEEC-CEEeeeEEEEeCCCCCceeEEccC-CccccCC-CCH----HHHHHHHHHHHHHHhCCC-
Confidence 99999987324444444332 44443 2222100 0 000 000 0011332 333 344555555544 676
Q ss_pred eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcC
Q 000086 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2304)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G 393 (2304)
+.+.+||+ |. ||||+|||..++...++..+|+|+.++.++...+
T Consensus 268 ~~~~vD~~-----g~-~~iEvN~r~~~~~~~~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 268 IFVGLDII-----GD-RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp CEEEEEEE-----TT-EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHH
T ss_pred cEEEEEec-----CC-EEEEEcCCCCcchHHHHHhhCcCHHHHHHHHHHH
Confidence 56679988 33 8999999976556666678999999999887654
No 78
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.66 E-value=5.3e-16 Score=188.44 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=143.3
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHH-----CCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 131 RVDAVWPGWGHASEIPELPDTLST-----KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 131 ~vDaV~pG~G~~SEn~~la~~l~~-----~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
.+|+|++..+. +...+...|+. .|+.++ +++++++.+.||..++++++++|||+|+|..
T Consensus 55 ~~d~v~~~~~~--~~~~~~~~l~~~~~~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~------------- 118 (324)
T 1z2n_X 55 EPNAIITKRTH--PVGKMADEMRKYEKDHPKVLFL-ESSAIHDMMSSREEINALLIKNNIPIPNSFS------------- 118 (324)
T ss_dssp CCSEEEECCSC--SSSHHHHHHHHHHHHCTTSEEE-TCHHHHHHHTBHHHHHHHHHHTTCCCSCEEE-------------
T ss_pred CceEEEEeccc--hHHHHHHHHHHHHHhCCCCeEe-CCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE-------------
Confidence 57889887533 22234555554 688764 8999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhc--cCCcEEEeecCCCCC---cCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-
Q 000086 206 IPDDVYRQACVYTTEEAIASCQV--VGYPAMIKASWGGGG---KGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ- 279 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~--IGyPVVIKPs~GgGG---kGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g- 279 (2304)
+.+.+++.+++++ ++||+|+||..|.|| +|+.++++.++|.. ...++++|+|+++
T Consensus 119 ----------~~~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~---------~~~~~lvqe~i~~~ 179 (324)
T 1z2n_X 119 ----------VKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD---------IHFPCLCQHYINHN 179 (324)
T ss_dssp ----------ESSHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT---------CCSSEEEEECCCCT
T ss_pred ----------eCCHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh---------cCCCEEEEEccCCC
Confidence 6677888887777 459999999999999 99999999888652 1568999999985
Q ss_pred cceeeEEEEEcCCCCEEEeecccccccccc-------------------------ce-------------EEEeCCCCCC
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRH-------------------------QK-------------IIEEGPITVA 321 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~RdcSvqrr~-------------------------qK-------------iieeaPa~~l 321 (2304)
+++++|.+++ |.++... |.. ...-+ .| -+..++. .
T Consensus 180 g~~~~v~v~g---~~~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~--~ 252 (324)
T 1z2n_X 180 NKIVKVFCIG---NTLKWQT-RTS-LPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPI--L 252 (324)
T ss_dssp TCEEEEEEET---TEEEEEE-ECC-CCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTT--T
T ss_pred CcEEEEEEEC---CEEEEEE-ecC-cccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCc--c
Confidence 4677777664 3444331 111 00000 00 0000111 1
Q ss_pred CHHHH-HHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 322 PLETV-KKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 322 ~~e~~-~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
+..+. +++.+.|.++++++|+. .+.|||++++++|++||||+|||++..
T Consensus 253 ~~~~~~~~i~~~a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 253 LNLTSEAEMRDLAYKVRCALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp TTSCCHHHHHHHHHHHHHHHTCS-EEEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred ccCCCHHHHHHHHHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 22222 68999999999999996 778999998546889999999998754
No 79
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.62 E-value=1.9e-16 Score=211.33 Aligned_cols=243 Identities=15% Similarity=0.071 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHcCCCEEEeCCC--cCCCCCchHHHHHHCCCeEECCCH-HHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 119 NVQLIVEMAEMTRVDAVWPGWG--HASEIPELPDTLSTKGIIFLGPPA-TSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 119 dvd~Ii~iA~~~~vDaV~pG~G--~~SEn~~la~~l~~~GI~fiGPs~-eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
+.+.|+++|++.++++++.+-+ +..........+...|. ..|+++ .++..++||..++++++++|||+|+|..
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~g~-itg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~--- 504 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGN-MTSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDE--- 504 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEETTT-BCTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCC---
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEecCC-eeCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEE---
Confidence 5789999999999999875532 22211110000100121 234444 4667778999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHh-hccCCcEEEeecCCCCCcCeEEEC---CHHHHHHHHHHHHhhCCCCcE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKVH---NDDEVRALFKQVQGEVPGSPI 271 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V~---s~eEL~~a~~~~~~e~~~~~i 271 (2304)
+.+.+++.+++ +.+|||+||||..|++|+||.+|+ +.+++.++++.+... +..+
T Consensus 505 --------------------~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~--~~~v 562 (750)
T 3ln6_A 505 --------------------FTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE--DSAI 562 (750)
T ss_dssp --------------------EETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH--CSEE
T ss_pred --------------------ECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh--CCcE
Confidence 55666776766 778999999999999999999999 999999999987654 5789
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEeecccccc------------------c-cc---cceEEE---------------
Q 000086 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV------------------Q-RR---HQKIIE--------------- 314 (2304)
Q Consensus 272 ~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSv------------------q-rr---~qKiie--------------- 314 (2304)
+||+|++| +|++|.+++| +++....|.... . +| |.+..+
T Consensus 563 lVEefI~G-~E~~v~Vvgg---~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~ 638 (750)
T 3ln6_A 563 LVEEYIEG-TEYRFFVLEG---DCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQ 638 (750)
T ss_dssp EEEECCCS-EEEEEEEETT---EEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHT
T ss_pred EEEeccCC-CEEEEEEECC---EEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHc
Confidence 99999986 8999999854 565544332210 0 00 111000
Q ss_pred -----e-------------------CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc-------cCCcEEEEE
Q 000086 315 -----E-------------------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-------ETGEYYFLE 363 (2304)
Q Consensus 315 -----e-------------------aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~-------~~g~~yfLE 363 (2304)
. +-+...+.++.+++.+.|+++++++|+. .+.||++.+. +.+++++||
T Consensus 639 g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiE 717 (750)
T 3ln6_A 639 GYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIE 717 (750)
T ss_dssp TCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEE
T ss_pred CCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEE
Confidence 0 0011123456678999999999999987 8889999873 245789999
Q ss_pred eccCCCCC-cceehhhhcCCHHHHHHHHHc
Q 000086 364 LNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 364 INpRlqge-hpvtE~vtGVDL~~~qL~iA~ 392 (2304)
+|++++-. |......+|.|+....+....
T Consensus 718 vN~~pg~~~h~~p~~g~~~~v~~~ii~~lf 747 (750)
T 3ln6_A 718 LNFNPLMYMHTYCQEGPGQSITPRILAKLF 747 (750)
T ss_dssp EESSCCCHHHHSCSBSCCCCCHHHHHHHHC
T ss_pred EcCCcchhhhcCcccCCCCcHHHHHHHHhC
Confidence 99999865 333334689999998887653
No 80
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.62 E-value=3.7e-16 Score=182.83 Aligned_cols=172 Identities=14% Similarity=0.200 Sum_probs=133.9
Q ss_pred cCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCC-----CCCcC
Q 000086 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG-----GGGKG 245 (2304)
Q Consensus 171 gDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~G-----gGGkG 245 (2304)
-||..++++++++|||+|+|.. +++.+++.++++++||||||||..+ ++|.|
T Consensus 20 l~k~~~k~ll~~~GIp~p~~~~-----------------------~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gG 76 (238)
T 1wr2_A 20 MVEYEAKQVLKAYGLPVPEEKL-----------------------AKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKV 76 (238)
T ss_dssp ECHHHHHHHHHTTTCCCCCCEE-----------------------ESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTC
T ss_pred CCHHHHHHHHHHcCcCCCCeEE-----------------------eCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCC
Confidence 4999999999999999999876 7889999999999999999999999 77888
Q ss_pred eEE-ECCHHHHHHHHHHHHhhCC-------CCcEEEEEeccccceeeEEEEEcC-CCCEEEeeccccccccccceEEEeC
Q 000086 246 IRK-VHNDDEVRALFKQVQGEVP-------GSPIFIMKVASQSRHLEVQLLCDQ-YGNVAALHSRDCSVQRRHQKIIEEG 316 (2304)
Q Consensus 246 Ir~-V~s~eEL~~a~~~~~~e~~-------~~~i~VEeyI~g~reieVqvl~D~-~G~vi~l~~RdcSvqrr~qKiieea 316 (2304)
+.+ ++|++++.++++++..... ...++||+|+++++|++|.++.|. .|.++.++.....+.-.+...+...
T Consensus 77 v~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~ 156 (238)
T 1wr2_A 77 VMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLV 156 (238)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEES
T ss_pred EEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecC
Confidence 998 7999999999998865431 268999999998899999999998 6777666531111111111122223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEE------------EEEccCCc-EEEEEeccCCC
Q 000086 317 PITVAPLETVKKLEQAARRLAKCVNYVGAATVEY------------LYSMETGE-YYFLELNPRLQ 369 (2304)
Q Consensus 317 Pa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEf------------l~d~~~g~-~yfLEINpRlq 369 (2304)
| ++++...+|.+.+.+...++||+|...+++ ++. +.++ +++|||||++-
T Consensus 157 P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~-~~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 157 P---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVD-DLKDYIKEMDLNPVFV 218 (238)
T ss_dssp S---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHH-HTTTTEEEEEEEEEEE
T ss_pred C---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH-cCCCCeEEEeccCeEE
Confidence 4 789999999999999999999999866652 122 1344 99999999874
No 81
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9.5e-16 Score=156.30 Aligned_cols=97 Identities=39% Similarity=0.652 Sum_probs=93.2
Q ss_pred EEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEE
Q 000086 673 LIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELI 751 (2304)
Q Consensus 673 ~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~L 751 (2304)
++++++|.++...++..|.||++|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|. + +++|+.|.+|++|
T Consensus 3 ~~~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l 81 (100)
T 2dn8_A 3 SGSSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVV 81 (100)
T ss_dssp CCCCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEE
T ss_pred ccCCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEE
Confidence 4688999999999999999999999999999999999999999999999999999999999999 7 9999999999999
Q ss_pred EEEecCCCCccccCCCCCC
Q 000086 752 ARLDLDDPSAVRKAEPFYG 770 (2304)
Q Consensus 752 a~l~~~~~~~v~~~~~f~g 770 (2304)
++|...++..+..+.||+|
T Consensus 82 ~~i~~~~~~~v~~~~~~~~ 100 (100)
T 2dn8_A 82 ARLELDDPSKVHPSGPSSG 100 (100)
T ss_dssp EEECCSCSCCCCSCCCCCC
T ss_pred EEEEcCCccEEEeccccCC
Confidence 9999999999999999975
No 82
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=99.59 E-value=4.2e-15 Score=190.90 Aligned_cols=153 Identities=21% Similarity=0.231 Sum_probs=120.8
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccCC--------CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1966 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~--------a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~ 1966 (2304)
....+|++|+. |||+|||.|+...| +++||||+|+|+|+||.|+++|+++.
T Consensus 60 GkltaRERI~~-----------LlD~GSF~El~~~~~~~~~~~~~dgVVtG~G~I~Gr~V~V~a~D~tv~---------- 118 (588)
T 3gf3_A 60 GQLSAMQRINA-----------LIDPGTWCPLNSLFNPENNKFGTTNIVNGLGRVDGKWVYIVASDNKKM---------- 118 (588)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSSCSEEEEEEEETTEEEEEEEECTTSG----------
T ss_pred CCCCHHHHHHH-----------HcCCCceEEccccccccccCCCCCcEEEEEEEECCEEEEEEEECCccc----------
Confidence 56889999997 89999999997755 46999999999999999999988765
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHH---HHcCCCCEEE
Q 000086 1967 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN---LRTYKQPVFV 2043 (2304)
Q Consensus 1967 p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a---l~~~~vP~i~ 2043 (2304)
||+|++..++|+.|++++|.++++|||+|+|++|...+..++...-+...++++.+ ++...+|+|+
T Consensus 119 -----------gGS~g~~~~~Ki~Ra~e~A~~~~lPvI~l~dSgGArl~~qe~~~~~l~~~g~if~~~~~ls~~~iP~Is 187 (588)
T 3gf3_A 119 -----------AGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIV 187 (588)
T ss_dssp -----------GGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEE
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcCcccccccccchhhHHHHHHHHHHHhcCCCCEEE
Confidence 89999999999999999999999999999999997765322210001122344444 5566899999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+|+ |.++.||+|.++. +++ ++++|+|.+++.+|+-+
T Consensus 188 vv~-Gp~~gGgAy~a~~----~~v--im~~~~a~i~~aGP~vI 223 (588)
T 3gf3_A 188 GIY-GTNPAGGGYHSIS----PTI--LIAHQDANMAVGGAGIL 223 (588)
T ss_dssp EEC-SEEETHHHHHHHS----SSE--EEEETTCEEESSCCC--
T ss_pred EEe-CCCCchhhhHhhC----CeE--EEEECCcEEEecChhhh
Confidence 999 3445566776443 466 78999999999999754
No 83
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=99.58 E-value=1e-14 Score=188.09 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=122.2
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccCC--------CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1966 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~--------a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~ 1966 (2304)
....+|++|+. |||+|||.|+...| +.+||||+|+|+|+||.|+++|+++.
T Consensus 59 gkltareRI~~-----------LlD~gsF~E~~~~y~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~t~~---------- 117 (587)
T 1pix_A 59 GELTALQRIEK-----------LVEPGSWRPLNTLFNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKL---------- 117 (587)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSCCSEEEEEEEETTEEEEEEEECTTTT----------
T ss_pred CCCCHHHHHHH-----------HcCCCCceEhhhhcchhhhcCCCCcEEEEEEEECCEEEEEEEECCccc----------
Confidence 45689999997 89999999998755 48999999999999999999988655
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhh----hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1967 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF----EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1967 p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~----~gilk~ga~iv~al~~~~vP~i 2042 (2304)
||+|++..++|+.|+++.|.++++|||+|+|++|...+...+. .+.. ..+..+..++...+|+|
T Consensus 118 -----------gGs~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGArlqe~~~~l~~~~~~g-~i~~~~~~ls~~giP~I 185 (587)
T 1pix_A 118 -----------AGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGG-TPFFRNAELNQLGIPVI 185 (587)
T ss_dssp -----------TTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTT-HHHHHHHHHHHTTCCEE
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccchhccccccHH-HHHHHHHHHhCCCCCEE
Confidence 8999999999999999999999999999999999554433331 1222 23444555777889999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhh---hhcchh
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIE---IKFRTK 2094 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~---i~~r~~ 2094 (2304)
++|+ |.+++||+|. .. .|++ +++.++|.+++.+|+.+-. |.|++.
T Consensus 186 svv~-G~~~GGga~~--a~---~d~v-im~e~~a~i~~~GP~vi~~~~~~~~~d~ 233 (587)
T 1pix_A 186 VGIY-GTNPAGGGYH--SI---SPTV-IIAHEKANMAVGGAGIMGGMNPKGHVDL 233 (587)
T ss_dssp EEEC-SEEETHHHHH--HH---SSSE-EEEETTCEEESCCCTTCCSCCSSSSCCH
T ss_pred EEEe-cCCcHHHHHH--Hh---cCce-EEecCCcEEEecCHHHHhhhccccccch
Confidence 9999 3444455665 32 2431 5667789999999954433 445444
No 84
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=99.56 E-value=2.4e-15 Score=192.47 Aligned_cols=194 Identities=17% Similarity=0.176 Sum_probs=143.1
Q ss_pred cccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHH
Q 000086 1596 VTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACA 1675 (2304)
Q Consensus 1596 ~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~ 1675 (2304)
..+.++|+ | .|.|+....| .+||++..++ +|++|.|++||++|++||+|+...+|+.|++++|.+
T Consensus 294 ~I~~l~D~--g----sF~E~~~~~~---~~vVtG~ari------~G~~V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~ 358 (522)
T 1x0u_A 294 IIYKIVDN--G----EFLEVHKHWA---QNIIVGFARI------AGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDA 358 (522)
T ss_dssp HHHHHSGG--G----CCEEETTTSC---TTEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC--C----ceEEecCCCc---ccEEEEEEEE------CCEEEEEEEECCCccCCCcCHHHHHHHHHHHHHHhh
Confidence 33445555 4 4667665443 4589999887 999999999999999999999999999999999999
Q ss_pred cCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccc
Q 000086 1676 KKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKE 1755 (2304)
Q Consensus 1676 ~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~ 1755 (2304)
.++|+|+|.+++|++++.+.+-...++ .++++ + .
T Consensus 359 ~~~Plv~l~ds~G~~~G~~~E~~G~~~---------------------~~Ak~---l-----~----------------- 392 (522)
T 1x0u_A 359 FNIPLISLVDTPGYVPGTDQEYKGIIR---------------------HGAKM---L-----Y----------------- 392 (522)
T ss_dssp TTCCEEEEEEECCBCCSHHHHHTTHHH---------------------HHHHH---H-----H-----------------
T ss_pred CCCCEEEEecCCCCCCchHHHHHHHHH---------------------HHHHH---H-----H-----------------
Confidence 999999999999999975433211100 01110 0 0
Q ss_pred ccccccccccccccccccccccccceEEEEEcCcccchhhhhhcc----cCEEEEecCcceEecChHHHHHhhcccccc-
Q 000086 1756 DGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARL----GMRCIQRLDQPIILTGFSALNKLLGREVYS- 1830 (2304)
Q Consensus 1756 ~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~l----gd~~I~~~~~~i~ltG~~al~~~lG~~vy~- 1830 (2304)
+++. ..+|+||+|+|+|+|||||.... +|+++|.+++.|++.||+..-..+-++.-.
T Consensus 393 ----------------~~~~--~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~gpegaa~Il~r~~i~~ 454 (522)
T 1x0u_A 393 ----------------AFAE--ATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRKEIQQ 454 (522)
T ss_dssp ----------------HHHH--CCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSCHHHHHHHHTSSSSSS
T ss_pred ----------------HHHh--CCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecCHHHHHHHHhhhhhhc
Confidence 0000 23799999999999998887766 999999999999999999654444332210
Q ss_pred --cc------------cccCcceeecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1831 --SH------------MQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1831 --s~------------~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
++ +.++.+..+...|++|.|++ ..+.-..+.++|..+.
T Consensus 455 ~~d~~~~~~~l~~~y~~~~~~~~~~~~~G~iD~II~-p~~tR~~L~~~L~~~~ 506 (522)
T 1x0u_A 455 ASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIE-PKDTRRVIVAGLEMLK 506 (522)
T ss_dssp SSSSSSSSHHHHHHHHHHHSSSHHHHHTTSSSEECC-GGGHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHhcCCHHHHHhcCCCcEeEC-HHHHHHHHHHHHHHHh
Confidence 01 13577788889999999995 6677777777777664
No 85
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=99.56 E-value=2.3e-14 Score=183.45 Aligned_cols=148 Identities=19% Similarity=0.180 Sum_probs=121.3
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------CCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+... .+.+||||.|+|+|+||.|+++|++++
T Consensus 42 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~f~l~~~~~~~dgvvtG~G~I~Gr~v~v~a~D~t~~--- 107 (523)
T 1on3_A 42 GKQTARERLNN-----------LLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVM--- 107 (523)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCTTTTTTCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------hcCCCccEEeCCccccCCCccccccccCCCCcEEEEEEEECCEEEEEEEEcCCcc---
Confidence 45789999997 8999999998632 368999999999999999999998877
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHH--HHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2037 (2304)
||++++..++|+.|+++.|.+.++|+|+|+|+.| ..|++++.. ..++++.++..+
T Consensus 108 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGG-----ARmqeg~~sl~~~~~i~~~~~~~ 164 (523)
T 1on3_A 108 ------------------GGSAGETQSTKVVETMEQALLTGTPFLFFYDSGG-----ARIQEGIDSLSGYGKMFFANVKL 164 (523)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECS-----BCGGGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCC-----CChhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988 445555543 556776665553
Q ss_pred --CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2038 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2038 --~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.+|+|++|+ +.+++|++|... -.|+ ++|.|+|.+++.+|+-+
T Consensus 165 s~~iP~Isvv~-gp~~GG~a~s~~----l~D~--ii~~~~a~i~~aGP~vI 208 (523)
T 1on3_A 165 SGVVPQIAIIA-GPCAGGASYSPA----LTDF--IIMTKKAHMFITGPQVI 208 (523)
T ss_dssp TTTSCEEEEEE-EEEESGGGHHHH----HSSE--EEEETTCEEESSCHHHH
T ss_pred cCCCCEEEEEc-CCCchHHHHHHh----hCCe--EEEeCCCEEEecCHHHH
Confidence 499999999 445555566442 2487 89999999999999654
No 86
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=99.55 E-value=4.3e-14 Score=181.31 Aligned_cols=148 Identities=21% Similarity=0.185 Sum_probs=121.2
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------CCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+... .+.+||||+|+|+|++|.|+++|++++
T Consensus 55 gkltareRi~~-----------LlD~gsF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~t~~--- 120 (548)
T 2bzr_A 55 GKLTARERIYA-----------LLDEDSFVELDALAKHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVF--- 120 (548)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCSTTGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCceEEeCCccccCCCccccccccCCCCcEEEEEEEECCEEEEEEEEcCccc---
Confidence 45789999997 8999999998532 368999999999999999999998877
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHH--HHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2037 (2304)
||+|++..++|+.|+++.|.+.++|+|+|+|+.|. .|++++.. ..++++.++..+
T Consensus 121 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGGA-----Rmqeg~~sl~~~~~i~~~~~~~ 177 (548)
T 2bzr_A 121 ------------------GGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGA-----RIQEGVVSLGLYSRIFRNNILA 177 (548)
T ss_dssp ------------------GGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCSC-----CGGGTTHHHHHHHHHHHHHHHT
T ss_pred ------------------cCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCCC-----CchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999884 44444443 557777776665
Q ss_pred C--CCEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2038 K--QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2038 ~--vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
. +|+|++|+ +.+++|++|.. . -.|+ ++|.|+ |.+++.+|+-+
T Consensus 178 s~~iP~Isvv~-gp~~GG~a~s~-a---l~D~--ii~~~~~a~i~~aGP~vI 222 (548)
T 2bzr_A 178 SGVIPQISLIM-GAAAGGHVYSP-A---LTDF--VIMVDQTSQMFITGPDVI 222 (548)
T ss_dssp TTTSCEEEEEC-SEEESGGGHHH-H---HSSE--EEEETTTCEEESSCHHHH
T ss_pred cCCCcEEEEec-CCCchHHHHHH-H---hCCe--EEeccCceeEEeccHHHH
Confidence 4 99999999 34444455543 2 2587 899997 99999999654
No 87
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=99.55 E-value=2.3e-14 Score=183.48 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=117.1
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------CCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+.. ..+.+||||+|+|+|+||.|+++|++++
T Consensus 45 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~i~Gr~v~v~a~D~t~~--- 110 (527)
T 1vrg_A 45 GKLTAWERLEL-----------LLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVM--- 110 (527)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCGGGGGGCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------HccCCceEEcccccccCCcccCcccccCCCCcEEEEEEEECCEEEEEEEEecccc---
Confidence 46789999997 899999999832 1358999999999999999999988766
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHH--cC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLR--TY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~--~~ 2037 (2304)
||++++..++|+.|+++.|.++++|+|+|+|+.|...+...+ .+...++++.++. ..
T Consensus 111 ------------------gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGAR~qeg~~---~l~g~~~~~~~~~~~s~ 169 (527)
T 1vrg_A 111 ------------------GGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVD---ALAGYGEIFLRNTLASG 169 (527)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHH---HHHHHHHHHHHHHHHTT
T ss_pred ------------------CccccHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCccchhH---HHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999955432211 2223344444433 45
Q ss_pred CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2038 KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2038 ~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
.+|+|++|+ |++.||+..... + .|+ ++|.|+ |.+++.+|+.+
T Consensus 170 ~iP~Isvv~--Gp~~GG~a~s~a--l-~D~--vi~~~~~a~i~~aGP~vi 212 (527)
T 1vrg_A 170 VVPQITVIA--GPCAGGAVYSPA--L-TDF--IVMVDQTARMFITGPNVI 212 (527)
T ss_dssp TSCEEEEEE--EEEBGGGGHHHH--H-SSE--EEEETTTCBCBSSCHHHH
T ss_pred CCCEEEEEe--CCCchHHHHHHH--c-CCe--EEEecCceEEEecCHHHH
Confidence 699999999 555554433333 2 577 899998 99999999754
No 88
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=99.54 E-value=3.2e-14 Score=172.82 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=124.8
Q ss_pred eEEEEEEEeecCcccCCCcEEEEEEEeccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchh
Q 000086 1624 IGMVAWCMEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAE 1695 (2304)
Q Consensus 1624 ~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~--------~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e 1695 (2304)
.+||+|..++ +|++|+|++||.++ ++|++++...+|+.|++++|.+.++|+|+|.+++|+|+| +
T Consensus 105 ~~vV~G~gri------~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~PlI~lvdt~Ga~~g--~ 176 (327)
T 2f9i_A 105 PAMIGGIGFL------NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPG--K 176 (327)
T ss_dssp TTEEEEEEEE------TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCC--H
T ss_pred cceEEEEEEE------CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCcc--h
Confidence 5699999887 99999999999998 999999999999999999999999999999999999999 4
Q ss_pred hhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccc
Q 000086 1696 EVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSR 1775 (2304)
Q Consensus 1696 ~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ 1775 (2304)
+.....++. .+ ...+..+
T Consensus 177 ~ae~~g~~~--------~~-------a~~l~al----------------------------------------------- 194 (327)
T 2f9i_A 177 AAEERGQSE--------SI-------ATNLIEM----------------------------------------------- 194 (327)
T ss_dssp HHHHTTHHH--------HH-------HHHHHHH-----------------------------------------------
T ss_pred hhhhhhhHH--------HH-------HHHHHHH-----------------------------------------------
Confidence 333322211 00 0000000
Q ss_pred ccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccccc----ccCcceeecccCceEEEe
Q 000086 1776 AYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM----QLGGPKIMATNGVVHLTV 1851 (2304)
Q Consensus 1776 ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~----~lGG~~i~~~nGv~d~~v 1851 (2304)
+-..+|+|++|+|+|+||||+++.+||++||.+++.+.+.||...-..+-+.+-..++ ...+++-+...|++|.|+
T Consensus 195 ~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v~~peg~a~il~~~~~~a~~A~e~~~itA~~a~~~GlVd~VV 274 (327)
T 2f9i_A 195 ASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVI 274 (327)
T ss_dssp HTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBSSCHHHHHHHHSSCGGGHHHHHHHHTCBHHHHHHTTSSSEEE
T ss_pred HhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEeecCchHHHHHHHHHhcchHHHHHHcCCCHHHHHHcCCceEEe
Confidence 0023799999999999999999999999999999999999998877766554300011 344555667899999999
Q ss_pred cCc
Q 000086 1852 SDD 1854 (2304)
Q Consensus 1852 ~dd 1854 (2304)
+..
T Consensus 275 ~ep 277 (327)
T 2f9i_A 275 SEP 277 (327)
T ss_dssp CCC
T ss_pred cCC
Confidence 743
No 89
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=99.53 E-value=2.9e-14 Score=181.84 Aligned_cols=148 Identities=21% Similarity=0.219 Sum_probs=120.8
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------CCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
...++|++|+. |||+|||.|+.. .++.+||||+|+|+|++|.|+++|++++
T Consensus 44 gkl~aReRI~~-----------LlD~gSF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~tv~--- 109 (530)
T 3iav_A 44 GKLTARERIDL-----------LLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVF--- 109 (530)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCCeEEcCCccccCCCCcccccccCCCCcEEEEEEEECCEEEEEEEECCCcc---
Confidence 56899999997 899999999853 3578999999999999999999998866
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHH--HHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2037 (2304)
||+|++..++|+.|+++.|.+.++|||+|+|+.|.. |++|+.. ..++++.+++.+
T Consensus 110 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGaR-----mqEg~~~l~~~~~i~~~~~~~ 166 (530)
T 3iav_A 110 ------------------GGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGAR-----IQEGVASLGAYGEIFRRNTHA 166 (530)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBC-----GGGTHHHHHHHHHHHHHHHHT
T ss_pred ------------------eEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc-----hhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999853 4455433 567787777665
Q ss_pred C--CCEEEEEcCCCcCCchhhhhcccccCCccceeeccc-CcEEEeeCccch
Q 000086 2038 K--QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADR-TAKGNVLEPEGM 2086 (2304)
Q Consensus 2038 ~--vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p-~A~~gvl~Peg~ 2086 (2304)
+ +|+|++|. |.+.||+..... + .|+ ++|.+ +|.+++.+|+-+
T Consensus 167 s~~iP~Isvv~--G~~~GG~a~~~a--l-~D~--~im~~~~a~i~~aGP~vi 211 (530)
T 3iav_A 167 SGVIPQISLVV--GPCAGGAVYSPA--I-TDF--TVMVDQTSHMFITGPDVI 211 (530)
T ss_dssp TTTSCEEEEEC--SEEEGGGGHHHH--H-SSE--EEEETTTCEEESSCHHHH
T ss_pred cCCCCEEEEEe--cCcchHHHHHHH--h-CCE--EEEecCCcEEEecCHHHH
Confidence 4 89999999 555554433333 2 577 77665 599999999754
No 90
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=99.50 E-value=1.8e-13 Score=174.38 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=118.9
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------CCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+... .+.+||||.|+|+|++|.|+++|++++
T Consensus 52 gkltaReRI~~-----------LlD~gSF~E~~~~~~~~~~~~~~~~~~~~~dgVVtG~G~I~Gr~v~v~a~D~t~~--- 117 (531)
T 3n6r_B 52 GKLTARERVDL-----------LLDEGSFEEFDMFVTHRCTDFNMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVL--- 117 (531)
T ss_dssp TCCCHHHHHHH-----------HSSSSCCEEECTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCceEEcCCccccCCcccccccccCCCCCEEEEEEEECCEEEEEEEECCCcc---
Confidence 56789999997 8999999998532 267899999999999999999998766
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHH--HHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2037 (2304)
||+|++..++|+.|+++.|.+.++|+|+|+|+.|. .|++|+.. ..++++.++..+
T Consensus 118 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGGA-----Rmqeg~~sl~~~~~i~~~~~~~ 174 (531)
T 3n6r_B 118 ------------------GGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGA-----RIQEGVDSLAGYGEVFQRNIMA 174 (531)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCB-----CGGGTHHHHHHHHHHHHHHHHT
T ss_pred ------------------cccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCcc-----ccCcccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999883 44455543 456777665544
Q ss_pred --CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2038 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2038 --~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
.+|+|++|+ |.+.||+...... .|+ +++.++ |.+++.+|+-+
T Consensus 175 s~~iP~Isvv~--Gp~~GG~a~s~a~---~D~--vi~~~~~a~i~~aGP~vI 219 (531)
T 3n6r_B 175 SGVVPQISMIM--GPCAGGAVYSPAM---TDF--IFMVKDSSYMFVTGPDVV 219 (531)
T ss_dssp TTTSCEEEEEC--SCCBGGGGHHHHH---SSE--EEEETTTCBCBSSCHHHH
T ss_pred hCCCCEEEEEe--CCcchHHHHHhhh---CCE--EEEecCCceEeecCHHHH
Confidence 589999999 4555544333332 477 788775 99999999654
No 91
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=99.49 E-value=6.1e-14 Score=170.84 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=124.0
Q ss_pred eEEEEEEEeecCcccCCCcEEEEEEEecc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchh
Q 000086 1624 IGMVAWCMEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAE 1695 (2304)
Q Consensus 1624 ~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t--------~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e 1695 (2304)
.+||+|..++ +|++|+|++||.. +++|++++...+|+.|++++|.+.++|+|+|.+++|||+| +
T Consensus 119 ~avV~G~ari------~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~lvDt~Ga~~g--~ 190 (339)
T 2f9y_A 119 KAIVGGIARL------DGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPG--V 190 (339)
T ss_dssp TTEEEEEEEE------TTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCS--H
T ss_pred CcEEEEEEEE------CCEEEEEEEEeCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCccc--h
Confidence 4699999887 9999999999988 5999999999999999999999999999999999999999 4
Q ss_pred hhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccc
Q 000086 1696 EVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSR 1775 (2304)
Q Consensus 1696 ~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ 1775 (2304)
+.....++. .+ ...+..+
T Consensus 191 ~aE~~g~~~--------~~-------a~~l~al----------------------------------------------- 208 (339)
T 2f9y_A 191 GAEERGQSE--------AI-------ARNLREM----------------------------------------------- 208 (339)
T ss_dssp HHHHTTHHH--------HH-------HHHHHHH-----------------------------------------------
T ss_pred HHHHHHHHH--------HH-------HHHHHHH-----------------------------------------------
Confidence 433322221 00 0000000
Q ss_pred ccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccccc----ccCcceeecccCceEEEe
Q 000086 1776 AYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM----QLGGPKIMATNGVVHLTV 1851 (2304)
Q Consensus 1776 ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~----~lGG~~i~~~nGv~d~~v 1851 (2304)
+-..+|+|++|+|+|+||||+++.+||++||.+++.+.+.||......+-+..-..++ ..-.++-+...|++|.|+
T Consensus 209 ~~~~vPvIavV~G~a~GGGa~~~~~~D~via~p~A~~~v~~Peg~asil~~~~~~~~~Aae~~~itA~~a~~~GlVd~VV 288 (339)
T 2f9y_A 209 SRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSII 288 (339)
T ss_dssp HTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSCSTTHHHHHHHHTCSHHHHHTTTSCSCCC
T ss_pred HhCCCCEEEEEeCCcCcHHHHHHhccCeeeecCCCEEEeeccchHHHHHHHhhccHHHHHHHcCCCHHHHHHcCCeeEEe
Confidence 0013799999999999999999999999999999999999999887766554300001 233445567899999999
Q ss_pred cCc
Q 000086 1852 SDD 1854 (2304)
Q Consensus 1852 ~dd 1854 (2304)
+..
T Consensus 289 ~ep 291 (339)
T 2f9y_A 289 PEP 291 (339)
T ss_dssp CCS
T ss_pred cCC
Confidence 743
No 92
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.48 E-value=9.8e-13 Score=158.99 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=153.5
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHCCCeEECCCHHHHHHhcCH----HHHHHHHHHCCC---CcCCCCCCCccCC
Q 000086 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2304)
Q Consensus 131 ~vDaV~pG~G~~S--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~sr~laq~aGV---Ptpp~s~~~~~~~ 198 (2304)
..|+|++-.+... ++. .+...++..|++++ ++++++..|+|| ..+.++++++|+ |.+|...
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~------ 140 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTY------ 140 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEe------
Confidence 5699998765443 221 23466888999998 999999999999 567788889998 7666332
Q ss_pred CCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000086 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2304)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~ 278 (2304)
..+.. +..+..|||+|+||..|+.|+||.++++.+++....+..... +..+++|||++
T Consensus 141 -----------------~~~~~---~~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~--~~~~~vQefI~ 198 (309)
T 1i7n_A 141 -----------------YPNHR---EMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT--QTYATAEPFID 198 (309)
T ss_dssp -----------------ESSGG---GGSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred -----------------eCChh---hhhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeecC
Confidence 11111 235568999999999999999999999999999888765433 36789999999
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccccccceEEEeC---CCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEG---PITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieea---Pa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
.++.+.|.++++ ++++..-|--+-..+.. +..+ |.+ ++ +++++.|.++++++|--+.+.||++.+ .
T Consensus 199 ~g~DiRv~VvGg---~v~a~~Rr~~~g~wrtN--~~~~~~e~~~-l~----~e~~~la~~A~~a~gGldi~GVDll~~-~ 267 (309)
T 1i7n_A 199 AKYDIRVQKIGN---NYKAYMRTSISGNWKTN--TGSAMLEQIA-MS----DRYKLWVDACSEMFGGLDICAVKAVHG-K 267 (309)
T ss_dssp EEEEEEEEEETT---EEEEEEEESSCTTTSCS--CCCSSEEEEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-T
T ss_pred CCceEEEEEECC---EEEEEEEEcCCCCCeec--CCcceeeecC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-C
Confidence 888999999875 45543222101111111 1111 111 22 457888999999995457888999998 3
Q ss_pred CCcEEEEEecc--CCCCCcceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINp--RlqgehpvtE~vtGVDL~~~qL~i 390 (2304)
+|.++++|+|. -++-+ -++..++.++.+..+..
T Consensus 268 ~g~~~V~EVN~~~~P~~~--~~~~~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 268 DGKDYIFEVMDCSMPLIG--EHQVEDRQLITDLVISK 302 (309)
T ss_dssp TSCEEEEEEECTTCCCCS--SCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCcc--chhhhhHHHHHHHHHHH
Confidence 67799999999 66543 34445777777777653
No 93
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=99.47 E-value=3.9e-13 Score=171.86 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=116.0
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCC-ceeccc-----CC-----CCeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDS-FVETLE-----GW-----ARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gs-F~E~~~-----~~-----a~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
....+|++|+. |||+|| |.|+.. .| +.+||||+|+|+|+||.|+++|+++.
T Consensus 72 gkltaReRI~~-----------LlD~gS~F~E~~~l~~~~~y~~~~~~dgVVtG~G~I~Gr~v~V~a~D~tv~------- 133 (555)
T 3u9r_B 72 GKLLVRERINR-----------LLDPGSPFLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVK------- 133 (555)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEEECTTTTTTTSSSCCGGGGEEEEEEEETTEEEEEEEECTTTG-------
T ss_pred CCCCHHHHHHH-----------HcCCCCCEEEEccccccccccccCCCCcEEEEEEEECCEEEEEEEECCccc-------
Confidence 46789999997 899999 999743 12 57999999999999999999988765
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhh---hHHHHHHHHHHHHHcCCCC
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFE---GILQAGSTIVENLRTYKQP 2040 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~---gilk~ga~iv~al~~~~vP 2040 (2304)
||++++..++|+.|+++.|.++++|||+|+|++|...+...+.- +.....+..+..++...+|
T Consensus 134 --------------gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSgGARl~~q~~~~~~~~~~~~i~~~~~~ls~~giP 199 (555)
T 3u9r_B 134 --------------GGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGIP 199 (555)
T ss_dssp --------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGGGGTSSSTTSTTHHHHHHHHHHHTTCC
T ss_pred --------------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcceeecccccHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999999999996544332210 1111223333445667899
Q ss_pred EEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccc
Q 000086 2041 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2041 ~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
+|++|+ +.++.||+|..-- ..++ +++.|+|.+++.+|+-
T Consensus 200 ~Isvv~-G~~~GGga~~~a~---~d~v--im~e~~a~i~~aGP~v 238 (555)
T 3u9r_B 200 QIAVVM-GSCTAGGAYVPAM---SDET--VMVREQATIFLAGPPL 238 (555)
T ss_dssp EEEEEC-SCCBGGGGHHHHT---SSEE--EEETTTCBCBSSCHHH
T ss_pred EEEEEe-cCCCccHHHHHHh---CCce--EEecCCceEEEccHHH
Confidence 999999 3445556654222 2333 6678999999999954
No 94
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.45 E-value=2.1e-12 Score=160.33 Aligned_cols=219 Identities=15% Similarity=0.076 Sum_probs=153.1
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHCCCeEECCCHHHHHHhcCH----HHHHHHHHHCCC---CcCCCCCCCccCC
Q 000086 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2304)
Q Consensus 131 ~vDaV~pG~G~~S--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~sr~laq~aGV---Ptpp~s~~~~~~~ 198 (2304)
..|+|++-.+... ++. .+...++..|+.++ ++++++..|.|| ..+.++++++|+ |.++...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~------ 252 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTF------ 252 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEe------
Confidence 5699998765433 222 23566788999998 999999999999 567778889998 6555322
Q ss_pred CCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000086 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2304)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~ 278 (2304)
+.+.. +..+..|||+||||..|.+|+||.++++.+++...++..... +..+++||||+
T Consensus 253 -----------------~~~~~---~~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~--~~~~~vQEfI~ 310 (422)
T 1pk8_A 253 -----------------YPNHK---EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT--KTYATAEPFID 310 (422)
T ss_dssp -----------------ESSGG---GCCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TSCEEEEECCC
T ss_pred -----------------cCchh---hhhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc--CceEEEEeecC
Confidence 11111 134568999999999999999999999999999888765433 35788999999
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccccc-c--ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRR-H--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvqrr-~--qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
.++.+.|.++++ ++++..-|--+-..+ + .-..+ +.+ ++ +++++.|.++++++|--+.+.||++.+ +
T Consensus 311 ~g~DIRv~VVGg---~vva~~Rr~~~g~WrtNvg~g~~e--~i~-lt----~e~~elA~kAaka~gGldiaGVDlL~s-~ 379 (422)
T 1pk8_A 311 AKYDVRVQKIGQ---NYKAYMRTSVSGNWKTNTGSAMLE--QIA-MS----DRYKLWVDTCSEIFGGLDICAVEALHG-K 379 (422)
T ss_dssp EEEEEEEEEETT---EEEEEEEEESSSCSSTTSSCEEEE--EEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-T
T ss_pred CCceEEEEEECC---EEEEEEEEcCCCCceeccCceeee--eeC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-C
Confidence 888999999875 455432221000011 1 00111 111 22 467889999999994347888999998 4
Q ss_pred CCcEEEEEecc--CCCCCcceehhhhcCCHHHHHHHHH
Q 000086 356 TGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 356 ~g~~yfLEINp--RlqgehpvtE~vtGVDL~~~qL~iA 391 (2304)
+|++|++|+|. .++-+ -++..++.|+.+..+...
T Consensus 380 dG~~~VlEVN~s~~P~~~--g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 380 DGRDHIIEVVGSSMPLIG--DHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp TSCEEEEEEECTTCCCCT--TCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCcc--chhhhHHHHHHHHHHHHH
Confidence 67799999999 55433 344557888888877654
No 95
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.43 E-value=2e-12 Score=158.10 Aligned_cols=220 Identities=13% Similarity=0.048 Sum_probs=154.9
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHCCCeEECCCHHHHHHhcCH----HHHHHHHHHCCC---CcCCCCCCCccCC
Q 000086 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2304)
Q Consensus 131 ~vDaV~pG~G~~S--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~sr~laq~aGV---Ptpp~s~~~~~~~ 198 (2304)
..|+|++-.+... ++. .+...++..|++++ ++++++..|.|| ..+.+++.++|+ |.+|...
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~------ 157 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTF------ 157 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEe------
Confidence 6799998865432 211 23566788999998 999999999999 667788899998 7666332
Q ss_pred CCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000086 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2304)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~ 278 (2304)
+.+. .+..+..|||+|+||..|..|+||.++++.+++....+..... +..+++|||++
T Consensus 158 -----------------~~~~---~~~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~--~~~~~vQefI~ 215 (344)
T 2p0a_A 158 -----------------FPNH---KPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA--KTYATTEAFID 215 (344)
T ss_dssp -----------------ESSS---TTCCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred -----------------cCch---hhhhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeccC
Confidence 1111 1234568999999999999999999999999999877655432 35788999999
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccccccc---eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ---KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q---KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
.++.+.|.++++ ++++..-|--+-..+.. -..+ +.+ ++ +++++.|.++++++|--+.+.||++.+ .
T Consensus 216 ~g~DiRv~VVGg---~vva~~R~~~~g~wrtN~~~~~~e--~~~-l~----~e~~~la~~Aa~a~gGldi~GVDll~~-~ 284 (344)
T 2p0a_A 216 SKYDIRIQKIGS---NYKAYMRTSISGNWKANTGSAMLE--QVA-MT----ERYRLWVDSCSEMFGGLDICAVKAVHS-K 284 (344)
T ss_dssp EEEEEEEEEETT---EEEEEEEEESSSCSSTTSSSEEEE--EEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-T
T ss_pred CCccEEEEEECC---EEEEEEEecCCCCCeecCCceEEE--eeC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-C
Confidence 888999999875 45543221101001110 0111 221 22 457888999999995457888999998 3
Q ss_pred CCcEEEEEecc--CCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 356 TGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 356 ~g~~yfLEINp--RlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
+|.+|++|+|. .+.-+ -++..++.|+....++...
T Consensus 285 ~G~~~VlEVN~~~~P~~~--~~~~~~~~~Ia~~ii~~i~ 321 (344)
T 2p0a_A 285 DGRDYIIEVMDSSMPLIG--EHVEEDRQLMADLVVSKMS 321 (344)
T ss_dssp TSCEEEEEEECTTCCCCG--GGHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCccc--chhhhHHHHHHHHHHHHHH
Confidence 67799999999 54432 4455688898888887654
No 96
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.41 E-value=2.5e-13 Score=134.15 Aligned_cols=77 Identities=40% Similarity=0.677 Sum_probs=72.0
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCCC
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPS 760 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~~~ 760 (2304)
+++++.|+||++|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|..+.++|+.|.+|++|++|+..++.
T Consensus 2 ~~~~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~~~G~~V~~G~~l~~i~~~~~~ 78 (84)
T 2kcc_A 2 ENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLELDDLE 78 (84)
T ss_dssp CCCTTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECSCTTCCCCTTCCCEEEECSCSC
T ss_pred CCCCceEECCCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEcCCCCEECCCCEEEEEeCCChh
Confidence 35678999999999999999999999999999999999999999999999998777999999999999999887763
No 97
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=6.1e-14 Score=143.13 Aligned_cols=98 Identities=39% Similarity=0.558 Sum_probs=86.6
Q ss_pred HHhcCHHHHHHHHHHCCCCcCCCC--CCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcC
Q 000086 168 AALGDKIGSSLIAQAANVPTLPWS--GSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 245 (2304)
Q Consensus 168 ~~lgDK~~sr~laq~aGVPtpp~s--~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkG 245 (2304)
..+.||..++++++++|||+|+|. . +.+.+++.++++++|||+||||..|+||+|
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~-----------------------~~~~~~~~~~~~~~~~P~vvKp~~~~~~~g 60 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGV-----------------------VKDAEEAVRIAREIGYPVMIKASAGGGGKG 60 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSC-----------------------BSSHHHHHHHHHHHCSSEEEEETTSCCTTT
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccc-----------------------cCCHHHHHHHHHhcCCCEEEEECCCCCCcc
Confidence 467899999999999999999987 4 678899999999999999999999999999
Q ss_pred eEEECCHHHHHHHHHHHHh----hCCCCcEEEEEeccccceeeEEEE
Q 000086 246 IRKVHNDDEVRALFKQVQG----EVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 246 Ir~V~s~eEL~~a~~~~~~----e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+++++|.+++..+++++.. ..++.+++||+|++|.+|++|+++
T Consensus 61 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 61 MRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 9999999999999988753 223468999999999789988765
No 98
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.36 E-value=2.4e-12 Score=158.44 Aligned_cols=175 Identities=13% Similarity=0.218 Sum_probs=121.9
Q ss_pred CCCeEECCCHHHHHHhcCHHHHHHHHHHC-------CCCcCCCCCCCccCCCCCcccccCcccccccccCC--HHHHHHH
Q 000086 155 KGIIFLGPPATSMAALGDKIGSSLIAQAA-------NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYT--TEEAIAS 225 (2304)
Q Consensus 155 ~GI~fiGPs~eam~~lgDK~~sr~laq~a-------GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s--~eea~~~ 225 (2304)
.|+.++ +++.++..+.||..|.+++.++ |||+|+|.. +.+ .+++.+.
T Consensus 100 ~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~-----------------------~~~~~~~~~~~~ 155 (346)
T 2q7d_A 100 PETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFME-----------------------LTSLCGDDTMRL 155 (346)
T ss_dssp TTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEE-----------------------ECSCCCTTHHHH
T ss_pred CCeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEE-----------------------EeCCCHHHHHHH
Confidence 377776 9999999999999999999997 999999765 111 1223232
Q ss_pred h--hccCCcEEEeecCCCC--CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc-ccceeeEEEEEcCCCCEEEeec
Q 000086 226 C--QVVGYPAMIKASWGGG--GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS-QSRHLEVQLLCDQYGNVAALHS 300 (2304)
Q Consensus 226 a--~~IGyPVVIKPs~GgG--GkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~-g~reieVqvl~D~~G~vi~l~~ 300 (2304)
. ..+|||+|+||..|.| |.|+.++.+.++|... +.+++|||||+ +++++.|-++++ .++.. .
T Consensus 156 ~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~---------~~~~lvQefI~~~G~dirv~VvG~---~v~~~-~ 222 (346)
T 2q7d_A 156 LEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI---------QPPCVVQNFINHNAVLYKVFVVGE---SYTVV-Q 222 (346)
T ss_dssp HHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC-----------CCEEEEECCCCTTEEEEEEEETT---EEEEE-E
T ss_pred HHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc---------CCCEEEEEeeCCCCeEEEEEEECC---EEEEE-E
Confidence 2 3589999999998654 6699999999988752 36899999997 357888888864 34432 2
Q ss_pred ccccc----c--------cccceEEE-e-----CC------CCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 301 RDCSV----Q--------RRHQKIIE-E-----GP------ITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 301 RdcSv----q--------rr~qKiie-e-----aP------a~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
|...- - .+.+|+.. . .| ...+++ .+++++.|.++.+++|...++ ||++.+..+
T Consensus 223 r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~~~g-vDii~~~~~ 299 (346)
T 2q7d_A 223 RPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVSLFG-IDIIINNQT 299 (346)
T ss_dssp EECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCCEEE-EEEEECTTT
T ss_pred EecCCCcCcCccccccccccceeeccCCccccccccccccccccCCC--hHHHHHHHHHHHHHhCCceEe-eEEEeecCC
Confidence 21100 0 00001100 0 01 011222 578999999999999999775 999998435
Q ss_pred CcEEEEEeccCCC
Q 000086 357 GEYYFLELNPRLQ 369 (2304)
Q Consensus 357 g~~yfLEINpRlq 369 (2304)
|++|+||+|+=++
T Consensus 300 g~~~VlEVN~~PG 312 (346)
T 2q7d_A 300 GQHAVIDINAFPG 312 (346)
T ss_dssp CCEEEEEEEESCC
T ss_pred CCEEEEEEeCCcc
Confidence 7899999999554
No 99
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.28 E-value=3.4e-12 Score=168.58 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=92.0
Q ss_pred cCeEEEEEEEe------eCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCC
Q 000086 613 EGSKYRIDMVR------RGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHD 686 (2304)
Q Consensus 613 ~g~~y~v~v~~------~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~d 686 (2304)
+|++|.+++.. .|...|.+.+||+.++|.+.....+... . . .......+
T Consensus 594 ~Gk~~~i~l~~i~~~~~~g~~~~~vevnG~~~~v~v~~~~~~~~~---------~------------~----~~~a~~~~ 648 (718)
T 3bg3_A 594 RGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKEM---------H------------F----HPKALKDV 648 (718)
T ss_dssp TSCEEEEEEEEEEEECTTSEEEEEEESSSSEEEEEEECGGGTCC------------------------------CCCCCS
T ss_pred cCceeEEEecccCCcccCCcEEEEEEECCEEEEEEEeccCccccc---------c------------c----cccCCCCC
Confidence 47888877542 2334688888888888887643322100 0 0 00123345
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
+..|.|||||+|++|.|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 7889999999999999999999999999999999999999999999999988 99999999999999763
No 100
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=99.26 E-value=4.8e-12 Score=157.92 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCC-cEEEee--cCCCCCcC---
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKA--SWGGGGKG--- 245 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKP--s~GgGGkG--- 245 (2304)
+++.+|++++++|||+|+|.. +.+.+|+.++++++|| |+|||| ..||.|||
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~k 60 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFFV-----------------------ADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEET
T ss_pred CHHHHHHHHHHCCcCCCCeEE-----------------------ECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccc
Confidence 578899999999999999876 7899999999999999 899999 46666666
Q ss_pred ------eEEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC-C-CEEEee-cccccc
Q 000086 246 ------IRKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY-G-NVAALH-SRDCSV 305 (2304)
Q Consensus 246 ------Ir~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~~-G-~vi~l~-~RdcSv 305 (2304)
|++++|++|+.++++++.... ++ ..++||+|++.++|+.+.++.|.. | .++.++ ...+.+
T Consensus 61 s~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~i 140 (395)
T 2fp4_B 61 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDI 140 (395)
T ss_dssp TSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCH
T ss_pred cCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccc
Confidence 999999999999999886543 22 469999999988999999999985 3 455554 334544
Q ss_pred cc----ccceEEEeC--CCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEE---------EEEccCCcEEEEEeccCCC
Q 000086 306 QR----RHQKIIEEG--PITVAPLETVKKLEQAARRLAKCVNYVGAATVEY---------LYSMETGEYYFLELNPRLQ 369 (2304)
Q Consensus 306 qr----r~qKiieea--Pa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEf---------l~d~~~g~~yfLEINpRlq 369 (2304)
.. ...+++... |...+++ ..|.++++.+|+.+...-.+ ++. +..++++||||++-
T Consensus 141 E~va~~~~d~i~~~~idp~~~l~~-------~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~--~~d~~~lEINPl~~ 210 (395)
T 2fp4_B 141 EEVAASNPELIFKEQIDIIEGIKD-------SQAQRMAENLGFLGPLQNQAADQIKKLYNLFL--KIDATQVEVNPFGE 210 (395)
T ss_dssp HHHHHHCGGGCEEEECCTTTCCCH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH--HTTEEEEEEEEEEE
T ss_pred eeccccCCceEEEEecCCCCCCCH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhh--hCCeEEEEeeeEEE
Confidence 32 245666554 4444554 45677778888865432111 122 23699999999974
No 101
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.25 E-value=5.3e-12 Score=123.22 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=66.5
Q ss_pred CCCeeeeCCCceeEEE-------EccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 686 DPSKLVAETPCKLLRY-------LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~-------~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
++..|+||++|+|.++ +|++||.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 3 ~~~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 3 SGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CSEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred cCeEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 4567999999999997 9999999999999999999999999999999999988 99999999999999874
No 102
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.25 E-value=8.3e-12 Score=124.02 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=63.2
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
++.+|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+ .|.+|++|++|+..+
T Consensus 16 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 16 TMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp TCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred CCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 46799999999999999999999999999999999999999999988 99999 899999999998643
No 103
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.25 E-value=1.1e-11 Score=118.34 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=66.1
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|+||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|..+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 37899999999999999999999999999999999999999999999988 9999999999999998764
No 104
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=125.24 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=63.3
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCcc-CCCCEEEEEecCCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAM-QAGELIARLDLDDP 759 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v-~~G~~La~l~~~~~ 759 (2304)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+.| .+|++|++|+..+.
T Consensus 19 ~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~~ 87 (98)
T 2dnc_A 19 MEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGE 87 (98)
T ss_dssp CSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTTS
T ss_pred CccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCCC
Confidence 4699999999999999999999999999999999999999999988 9999999 99999999987543
No 105
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.22 E-value=1.2e-11 Score=124.45 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=63.9
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
+..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+..+.
T Consensus 15 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~~ 83 (93)
T 1k8m_A 15 GIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEAL 83 (93)
T ss_dssp TSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred CCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 35799999999999999999999999999999999999999999988 999999999999999987544
No 106
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.20 E-value=1.9e-11 Score=152.46 Aligned_cols=165 Identities=17% Similarity=0.226 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCc----Ce
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGK----GI 246 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGk----GI 246 (2304)
+++.+|++++++|||+|+|.. +++.+|+.++++++||| +||||..+.||+ ||
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV 60 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGYA-----------------------CTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCE
T ss_pred CHHHHHHHHHHCCcCCCCeeE-----------------------ECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCE
Confidence 689999999999999999876 78999999999999999 999999875554 99
Q ss_pred EEECCHHHHHHHHHHHHhhC--------C---CCcEEEEEeccccceeeEEEEEcCC-C-CEEEee-cc--ccc-ccccc
Q 000086 247 RKVHNDDEVRALFKQVQGEV--------P---GSPIFIMKVASQSRHLEVQLLCDQY-G-NVAALH-SR--DCS-VQRRH 309 (2304)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~---~~~i~VEeyI~g~reieVqvl~D~~-G-~vi~l~-~R--dcS-vqrr~ 309 (2304)
++++|++++.++++++.... . ...++||+|++.++|+.|.++.|.. | .++.+. .. ++. +++++
T Consensus 61 ~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~ 140 (388)
T 2nu8_B 61 KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEET 140 (388)
T ss_dssp EEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccC
Confidence 99999999999999886531 1 2479999999988999999999986 3 455443 11 333 23322
Q ss_pred -ceEEE--eCCCCCCCHHHHHHHHHHHHHHHHHCCceeee---------EE-EEEEEccCCcEEEEEeccCCC
Q 000086 310 -QKIIE--EGPITVAPLETVKKLEQAARRLAKCVNYVGAA---------TV-EYLYSMETGEYYFLELNPRLQ 369 (2304)
Q Consensus 310 -qKiie--eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~---------tV-Efl~d~~~g~~yfLEINpRlq 369 (2304)
.++.. ..|...+++.. +.++++.+|+.+.. .+ +++.+ . .++++||||++.
T Consensus 141 pd~i~~~~i~P~~gl~~~~-------a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~--~-d~~~lEINPl~~ 203 (388)
T 2nu8_B 141 PHLIHKVALDPLTGPMPYQ-------GRELAFKLGLEGKLVQQFTKIFMGLATIFLE--R-DLALIEINPLVI 203 (388)
T ss_dssp GGGEEEEECBTTTBCCHHH-------HHHHHHHTTCCTHHHHHHHHHHHHHHHHHHH--T-TEEEEEEEEEEE
T ss_pred CceEEEEecCCCCCCCHHH-------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh--C-CEEEEEecceEE
Confidence 56665 45766676654 34444455665421 00 11222 3 699999999874
No 107
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.19 E-value=1.5e-11 Score=119.82 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=63.1
Q ss_pred eeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 691 ~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
.++++|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+.
T Consensus 11 ~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 11 ESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 367899999999999999999999999999999999999999999988 999999999999999875
No 108
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.15 E-value=7.1e-11 Score=114.18 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=67.5
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
.+...|.||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 6 ~~~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 6 AGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCCeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 456789999999999999999999999999999999999999999999999988 99999999999999874
No 109
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.15 E-value=5.9e-11 Score=120.76 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCc
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSA 761 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~ 761 (2304)
.+...|+||++|+|.+|+|++||.|++||+|++||+|||.++|+||.+|+|..+ +++|+.|.+|++|++|...+...
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~~~ 89 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDK 89 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCSCC
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCccc
Confidence 456789999999999999999999999999999999999999999999999988 99999999999999998766543
No 110
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.15 E-value=7.2e-11 Score=112.98 Aligned_cols=69 Identities=30% Similarity=0.437 Sum_probs=66.1
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
...|+||++|+|.+|+|++||.|++||+|+++|+|||..+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 5 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CeEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4679999999999999999999999999999999999999999999999988 99999999999999874
No 111
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.14 E-value=6.6e-11 Score=164.94 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=84.0
Q ss_pred CCeEEEEEEEEec----CC--ceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCC
Q 000086 634 NESEIEAEIHTLR----DG--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGS 707 (2304)
Q Consensus 634 ng~~~~V~v~~l~----dg--~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd 707 (2304)
.|+.+.+.+...+ +| .+.+.+||+.+.|.+.+...... ...........++..|.|||||+|++|.|++||
T Consensus 1039 ~gk~~~~~~~~~~~~~~~g~~~~~~evnG~~~~v~v~~~~~~~~---~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd 1115 (1165)
T 2qf7_A 1039 KGKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRAHGAT---GAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQ 1115 (1165)
T ss_dssp TTEEEEEEEEEECCCCTTSEEEEEEEETTEEEEEEEECGGGTCC---SCCCSCBCCTTCTTEEECSSCEEEEEECCSSCC
T ss_pred CCccceeEecccCCCccCCceEEEEEECCEEEEEEecCcccccc---cccccccCCCCCCceeeCCCCeEEEEEEcCCcC
Confidence 4566656554332 22 36677888888887765432110 000111122345688999999999999999999
Q ss_pred EEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 708 HIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 708 ~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|++|++|++|+
T Consensus 1116 ~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1116 AVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred EeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 9999999999999999999999999999988 99999999999999875
No 112
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.13 E-value=6.9e-11 Score=125.27 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
.+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|..+ +++|+ .|..|++|++|+..+
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 579999999999999999999999999999999999999999988 99998 899999999998654
No 113
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=123.79 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=62.7
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+ .|..|++|++|+..+
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 4689999999999999999999999999999999999999999988 99999 899999999998654
No 114
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.13 E-value=3.9e-11 Score=116.25 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=62.6
Q ss_pred eeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 691 ~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
.+|++|+|.+|+|++||+|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 568999999999999999999999999999999999999999999988 99999999999999985
No 115
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=124.29 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=33.8
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
.+.+...|+||++|+|.+|.|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 21 ~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 21 QSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 34556789999999999999999999999999999999999999999999999988 99999999999999874
No 116
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=99.09 E-value=4.5e-10 Score=147.58 Aligned_cols=165 Identities=14% Similarity=0.051 Sum_probs=121.3
Q ss_pred CCCChHHHhhccc---------CCCC--CcccccccC-CCceecccCCC---CeEEEEEE------EECCeEEEEEEEec
Q 000086 1895 NSCDPRAAICGFL---------DNNG--KWIGGIFDK-DSFVETLEGWA---RTVVTGRA------RLGGIPVGIVAVET 1953 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~---------d~~~--~~~~gl~D~-gsF~E~~~~~a---~~vVtG~a------rl~G~pVGViA~e~ 1953 (2304)
.+||--++++... .+.+ +...-|||+ |||.|+....+ .++|+|++ +++|++|.|+|+|.
T Consensus 51 y~yd~~~~~~~a~~~~w~~~~~~~~~~l~~~elllD~~gsf~E~~~~~~~~~~GmV~g~~~~~t~~~~~Gr~vvVianD~ 130 (793)
T 2x24_A 51 YVYDFPEMFRQALFKMWPSPDKYPKDILTYTELVLDPQGQLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDI 130 (793)
T ss_dssp CGGGHHHHHHHHHHHHSCSSSCCCTTSEEEEEEEECTTSCEECCCCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECS
T ss_pred cccccHHHHHHHHHHhhhhcccCCCCchhHHHHhcCCCCCEEEeCCccCCCCCCeeeeeecccCccccCCeEEEEEEECC
Confidence 4577777775211 1122 345679999 99999987653 58999998 56999999999987
Q ss_pred ceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhh-------------
Q 000086 1954 QTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF------------- 2020 (2304)
Q Consensus 1954 ~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~------------- 2020 (2304)
++. ||++++..++|..|++++|.++++|+|+|+|+.|...|..++.
T Consensus 131 t~~---------------------gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGARig~~ee~~sl~qma~~d~~~ 189 (793)
T 2x24_A 131 TFR---------------------IGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVAWVDPED 189 (793)
T ss_dssp SGG---------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCHHHHTTCEEEESSSSC
T ss_pred ccc---------------------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCccchhhhhhhhcccccCccC
Confidence 655 8999999999999999999999999999999999887754432
Q ss_pred --hhH------------------------------------------------HHHHHHHHHHHHc--CCCCEEEEEcCC
Q 000086 2021 --EGI------------------------------------------------LQAGSTIVENLRT--YKQPVFVYIPMM 2048 (2304)
Q Consensus 2021 --~gi------------------------------------------------lk~ga~iv~al~~--~~vP~i~~I~~~ 2048 (2304)
.|. ++....|..+.+. ..+|+|++|+ +
T Consensus 190 p~~G~~~~yl~~~~~~~~sa~~~v~~~~~~~~ge~~~~i~~i~g~~~~i~v~~l~~SG~iag~~s~a~~~iP~IsvV~-G 268 (793)
T 2x24_A 190 PHKGIKYLYLTPQDYTRISSLNSVHCKHVEEDGESRYVITDIIGKEEGLGVENLRGSGMIAGETSQDYDEIVTISMVS-C 268 (793)
T ss_dssp STTCEEEEEECHHHHHHTTTSCSEEEEEEEETTEEEEEEEEECCSSSSSSTHHHHHHHHHHHHHHHHHHHSCEEEEEC-S
T ss_pred cccchheeccchhHHHhhhccccccccccccccccceeeeccccccchHHHHHHHhccchhhccccccCCCCEEEEEe-c
Confidence 111 1111122222222 3599999999 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEeeCccchh
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
.+.+||||.+.-+ |+ +++.++|.+++.||+.+-
T Consensus 269 ~~~GGgAy~~~lg----D~--vI~~~~a~i~ltGp~vi~ 301 (793)
T 2x24_A 269 RALGIGAYLVRLG----QR--VIQVENSHIILTGATALN 301 (793)
T ss_dssp EEETHHHHHHHHT----CC--EEEETTCEEESSCHHHHH
T ss_pred CCchHHHHHHhhC----Ce--EEEeccccEEecCHHHHH
Confidence 4555577766543 66 888899999999997764
No 117
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.08 E-value=2.2e-11 Score=120.38 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=66.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
.+++|..|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 4 ~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred EEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 47788889999999999999999999999999999999999999999888 99999999999999998754
No 118
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.08 E-value=8.8e-11 Score=163.71 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=65.3
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
..|.|||||+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+.|+.|++|++|
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 479999999999999999999999999999999999999999999999999 9999999999999987
No 119
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.05 E-value=4.6e-11 Score=116.86 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=64.3
Q ss_pred eeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 690 l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
+-++++|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4468999999999999999999999999999999999999999999988 9999999999999999764
No 120
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.05 E-value=1.7e-10 Score=112.47 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=61.8
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
+|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 99999999999999999999999999999999999999999988 99999999999999998654
No 121
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.04 E-value=1.5e-11 Score=120.14 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=61.7
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
+..+|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+.
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 45799999999999999999999999999999999999999999988 999999999999998864
No 122
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.02 E-value=4e-10 Score=109.70 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
+ +|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 13 ~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 13 G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 6 999999999999999999999999999999999999999988 99999999999999998654
No 123
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.86 E-value=3.3e-10 Score=133.88 Aligned_cols=212 Identities=13% Similarity=0.095 Sum_probs=129.4
Q ss_pred CCEEEeCCCcCCCCCchH---HHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 132 VDAVWPGWGHASEIPELP---DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 132 vDaV~pG~G~~SEn~~la---~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
+|..++=|+ ..-.+- +.++..+. |+-++..+...++||..+.++++++|||+|++.. +..+.+. |.
T Consensus 58 ~d~lisf~s---~gfpl~kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~----~~rd~~~---~~ 126 (330)
T 3t7a_A 58 CDCLISFHS---KGFPLDKAVAYAKLRNP-FVINDLNMQYLIQDRREVYSILQAEGILLPRYAI----LNRDPNN---PK 126 (330)
T ss_dssp CSEEEECCC---TTCCHHHHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEE----ECCBTTB---GG
T ss_pred CCEEEEecc---CCCcHHHHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEE----EeCCCCC---cc
Confidence 677775442 222232 33444564 4459999999999999999999999999999865 1101100 00
Q ss_pred ccccccccCCHHHHHH-HhhccCCcEEEeecCCC---------------CCcCeEEECCHHHHHHHHHHHHhhCCCCcEE
Q 000086 209 DVYRQACVYTTEEAIA-SCQVVGYPAMIKASWGG---------------GGKGIRKVHNDDEVRALFKQVQGEVPGSPIF 272 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~-~a~~IGyPVVIKPs~Gg---------------GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~ 272 (2304)
++ ..+. .++..+ ..+.+|+|+|+||..|. +++-++++.|.+.....-..+ .....++
T Consensus 127 ~~---~~~e-~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v---r~~~~~i 199 (330)
T 3t7a_A 127 EC---NLIE-GEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV---RKTGSYI 199 (330)
T ss_dssp GS---SEEE-CSSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC---CSSSCEE
T ss_pred cc---ceec-cchhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh---ccCCcEE
Confidence 00 0011 111122 24568999999999995 223456666543320000011 1246899
Q ss_pred EEEecc-ccceeeEEEEEcCCCCEEEeeccccc----cccccceEEEe-CCCCCCCHHHHHHHHHHHHHHHHHCCceeee
Q 000086 273 IMKVAS-QSRHLEVQLLCDQYGNVAALHSRDCS----VQRRHQKIIEE-GPITVAPLETVKKLEQAARRLAKCVNYVGAA 346 (2304)
Q Consensus 273 VEeyI~-g~reieVqvl~D~~G~vi~l~~RdcS----vqrr~qKiiee-aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~ 346 (2304)
+|||++ .++.+-|-++++ ++++-..|... --|++-.--+. .|.. +++ +.++.|.++++++|. +.+
T Consensus 200 ~QEFI~~~G~DIRv~vVG~---~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~-Lt~----eek~iA~kaa~a~G~-~v~ 270 (330)
T 3t7a_A 200 YEEFMPTDGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEVRYPVI-LNA----REKLIAWKVCLAFKQ-TVC 270 (330)
T ss_dssp EEECCCCSSEEEEEEEEST---TCEEEEEEECTTSSCBCCBCTTSCBCCEECC-CCH----HHHHHHHHHHHHTTB-SEE
T ss_pred EEeccCCCCceEEEEEECC---EEEEEEEEeCCCCCCcEEEcCCCCceeeeec-CCH----HHHHHHHHHHHHhCC-ceE
Confidence 999996 468888888875 55555455321 11221110111 1332 444 668899999999997 577
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEH 372 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2304)
.||++.+ ++++|++|+|.+..+-.
T Consensus 271 GVDlLrs--~~~~~V~EVNg~~fvk~ 294 (330)
T 3t7a_A 271 GFDLLRA--NGQSYVCDVNGFSFVKN 294 (330)
T ss_dssp EEEEEEE--TTEEEEEEEEESCCCSS
T ss_pred EEEEEEE--CCccEEEEeCCCccccC
Confidence 7999998 67899999999988753
No 124
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.79 E-value=2.6e-09 Score=114.11 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=67.5
Q ss_pred CeeeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCC
Q 000086 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDD 758 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v~---~G~-~La~l~~~~ 758 (2304)
+...+|++|.|+.+.+ ++||.|++||++++||+|||+++|.||.+|+|..+ +..|+.|+ .|+ .|++|++.+
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence 3478899999999988 99999999999999999999999999999999888 67899999 898 999999887
Q ss_pred CCc
Q 000086 759 PSA 761 (2304)
Q Consensus 759 ~~~ 761 (2304)
++.
T Consensus 117 ~~~ 119 (136)
T 1zko_A 117 EGE 119 (136)
T ss_dssp GGG
T ss_pred HHH
Confidence 643
No 125
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=98.70 E-value=1.7e-09 Score=136.25 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=0.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++.
T Consensus 15 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 15 HEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp -------------------------------------------------------------------
T ss_pred ccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 369999999999999999999999999999999999999999988 999999999999999986553
No 126
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.67 E-value=5.7e-08 Score=121.59 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCc----CeE
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGK----GIR 247 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGk----GIr 247 (2304)
+-+.+|++++++|||+|+|.. +++.+|+.++++++||||||||....||| ||+
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~ 60 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKV-----------------------AYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVK 60 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEE
T ss_pred CHHHHHHHHHHCCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEE
Confidence 456789999999999999876 78999999999999999999999865555 999
Q ss_pred EECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCC
Q 000086 248 KVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYG 293 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reieVqvl~D~~G 293 (2304)
+++|++|+.++++++.... ....++||+|++.++|+.+.++.|...
T Consensus 61 l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g~El~vgv~~D~~~ 110 (397)
T 3ufx_B 61 LADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRAK 110 (397)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEEEEEEEEEEEETTT
T ss_pred EeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCCeeEEEEEEecCCC
Confidence 9999999999999987532 135899999999789999999999764
No 127
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=98.60 E-value=4.7e-09 Score=121.78 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCc-cCCCCEEEEEecC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQA-MQAGELIARLDLD 757 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~-v~~G~~La~l~~~ 757 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+. |..|++|++|+.+
T Consensus 16 ~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 16 EEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEecc
Confidence 589999999999999999999999999999999999999999988 999997 9999999999754
No 128
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A
Probab=98.54 E-value=3.1e-07 Score=120.07 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=103.4
Q ss_pred CCceecccC---CCCeEEEEEEEE------CCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1921 DSFVETLEG---WARTVVTGRARL------GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1921 gsF~E~~~~---~a~~vVtG~arl------~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
|...|.... -..++|+|.+++ +|++|.|+++|++++ ||++++..++|+.|
T Consensus 73 ~~L~~~~r~~G~nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t~~---------------------gGS~G~~~~eKi~R 131 (758)
T 3k8x_A 73 GELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFK---------------------IGSFGPQEDEFFNK 131 (758)
T ss_dssp SCEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSG---------------------GGCBCHHHHHHHHH
T ss_pred CCeehhhcCCCCCCceEEEEEEEECCccccCCeEEEEEEECCccc---------------------cccCcHHHHHHHHH
Confidence 344454433 356899999999 999999999988766 89999999999999
Q ss_pred HHHHhhccCCCEEEEecCCCCCCchhhhh-------------------------hhHHH---------------------
Q 000086 1992 ALMDFNREELPLFILANWRGFSGGQRDLF-------------------------EGILQ--------------------- 2025 (2304)
Q Consensus 1992 ~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~-------------------------~gilk--------------------- 2025 (2304)
+++.|.+.++|+|+|+|++|...+..++. .++.+
T Consensus 132 a~e~A~~~~lPvI~l~dSGGARmqe~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~~~vi~~~~~~~ge~ 211 (758)
T 3k8x_A 132 VTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEE 211 (758)
T ss_dssp HHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETTEE
T ss_pred HHHHHHHcCCCEEEEecCCCcCccccchhccccccccccccchhcccceeccCHHHHHHhhhccccccceeeeeccCCce
Confidence 99999999999999999999666543320 01111
Q ss_pred --------------------HHHHHHHHHHc--CCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2026 --------------------AGSTIVENLRT--YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2026 --------------------~ga~iv~al~~--~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
....|..+++. ..+|+|++|+ |.+++||||++.- .|+ +++-+++.+++.+|
T Consensus 212 r~~I~~I~G~~~~~gv~~l~~sG~iag~~s~a~~~IPqIsvV~-G~c~GGgAY~paL----~D~--vImv~~s~ifltGP 284 (758)
T 3k8x_A 212 RFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVT-CRSVGIGAYLVRL----GQR--AIQVEGQPIILTGA 284 (758)
T ss_dssp EEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEC-SCEETHHHHHHHH----TCE--EEEETTCCEESSCH
T ss_pred eeeEeeeeccccchhhhhccccchhhhhhhhhhcCCCEEEEEc-cCCchHHHHHHhh----CCE--EEEECCceEEEeCH
Confidence 11112222222 3589999999 5677778886544 366 88889999999999
Q ss_pred cchhhh
Q 000086 2084 EGMIEI 2089 (2304)
Q Consensus 2084 eg~v~i 2089 (2304)
..+-..
T Consensus 285 ~vIk~~ 290 (758)
T 3k8x_A 285 PAINKM 290 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766433
No 129
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.53 E-value=6.8e-08 Score=100.70 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=66.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccce-----------------------------eeecCCCcEEEEe-
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCM-----------------------------PLLSPASGVLQFK- 738 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~-----------------------------~l~ap~~G~V~~i- 738 (2304)
.|.||++|+|.++.|++||.|++||+|++|+..+++. .|+||.+|+|..+
T Consensus 3 ~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~ 82 (116)
T 2k32_A 3 IIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL 82 (116)
T ss_dssp EECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred EEeCcCCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence 5889999999999999999999999999999987765 8999999999888
Q ss_pred eCCCCccCCC-CEEEEEecCCCC
Q 000086 739 MAEGQAMQAG-ELIARLDLDDPS 760 (2304)
Q Consensus 739 ~~~G~~v~~G-~~La~l~~~~~~ 760 (2304)
+++|+.|.+| ++|++|...+.-
T Consensus 83 ~~~G~~v~~g~~~l~~i~~~~~~ 105 (116)
T 2k32_A 83 VNIGDYVSASTTELVRVTNLNPI 105 (116)
T ss_dssp CCTTCEECTTTSCCEEEECSCTH
T ss_pred CCCCCEEcCCCcEEEEEECCCeE
Confidence 9999999999 999999876653
No 130
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.39 E-value=2.1e-07 Score=99.03 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=63.2
Q ss_pred eeeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCCC
Q 000086 689 KLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDDP 759 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v~---~G~-~La~l~~~~~ 759 (2304)
....|++|.|+.+.+ ++|++|++||++++||+|||+++|.||.+|+|..+ ....+.|+ .|+ -|++|++.++
T Consensus 29 d~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 108 (131)
T 1hpc_A 29 DHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSP 108 (131)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSG
T ss_pred hhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECCH
Confidence 467899999999988 99999999999999999999999999999999988 33556775 455 8999998876
Q ss_pred Cc
Q 000086 760 SA 761 (2304)
Q Consensus 760 ~~ 761 (2304)
+.
T Consensus 109 ~~ 110 (131)
T 1hpc_A 109 DE 110 (131)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 131
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.24 E-value=5.5e-07 Score=95.55 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=63.9
Q ss_pred eeeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCCC
Q 000086 689 KLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDDP 759 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v~---~G~-~La~l~~~~~ 759 (2304)
....|+.|.|+.+.+ ++|++|++||++++||+|||.++|.||.+|+|..+ ....+.|+ .|+ -|++|++.++
T Consensus 30 d~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 109 (128)
T 3a7l_A 30 EHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDE 109 (128)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred hHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECCH
Confidence 356799999999987 99999999999999999999999999999999988 35667777 676 8999998876
Q ss_pred Cc
Q 000086 760 SA 761 (2304)
Q Consensus 760 ~~ 761 (2304)
+.
T Consensus 110 ~~ 111 (128)
T 3a7l_A 110 SE 111 (128)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 132
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.24 E-value=5.6e-07 Score=95.53 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=63.4
Q ss_pred eeeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCcc---CCCC-EEEEEecCCC
Q 000086 689 KLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAM---QAGE-LIARLDLDDP 759 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v---~~G~-~La~l~~~~~ 759 (2304)
....|++|.|+.+.+ ++|++|++||++++||+|||.++|.||.+|+|..+ ....+.| ..|+ -|++|++.++
T Consensus 29 ~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 108 (128)
T 1onl_A 29 DYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDM 108 (128)
T ss_dssp HHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCG
T ss_pred hHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCH
Confidence 456799999999887 99999999999999999999999999999999988 3466677 5576 8999998876
Q ss_pred Cc
Q 000086 760 SA 761 (2304)
Q Consensus 760 ~~ 761 (2304)
+.
T Consensus 109 ~~ 110 (128)
T 1onl_A 109 GD 110 (128)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 133
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.35 E-value=7.3e-05 Score=88.97 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=62.5
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc---------------------------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK--------------------------------------------- 722 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK--------------------------------------------- 722 (2304)
..|.||.+|+|.++.|++||.|++||+|++|+.-.
T Consensus 23 ~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~ 102 (277)
T 2f1m_A 23 AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQ 102 (277)
T ss_dssp EEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHH
T ss_pred EEEEccccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 46899999999999999999999999999998621
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCCC
Q 000086 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDDP 759 (2304)
Q Consensus 723 --------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G--~~La~l~~~~~ 759 (2304)
-...|+||.+|+|..+ +.+|+.|.+| ++|++|...+.
T Consensus 103 a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~~ 168 (277)
T 2f1m_A 103 ALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 168 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCCc
Confidence 1247999999999988 9999999999 68999875443
No 134
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.27 E-value=0.00024 Score=89.74 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=62.6
Q ss_pred CCeeeeCCCceeEEEEc-cCCCEEccCCcEEEEEc---------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEV--------------------------------------------- 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEa--------------------------------------------- 720 (2304)
...|.++.+|+|.++.| ++||.|++||+|++|+.
T Consensus 121 ~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~ 200 (413)
T 3ne5_B 121 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 200 (413)
T ss_dssp EEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35699999999999999 99999999999999994
Q ss_pred ---cccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 721 ---MKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 721 ---MKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..-...|+||.+|+|..+ +.+|+.|.+|++|++|...
T Consensus 201 ~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 201 TQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp HTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred hccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 112457999999999999 9999999999999998743
No 135
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.25 E-value=0.00023 Score=87.77 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=63.8
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcccc-------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm------------------------------------------- 723 (2304)
...|.||.+|+|.+++|++||.|++||+|+.|+.-..
T Consensus 57 ~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~ 136 (359)
T 3lnn_A 57 LVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQS 136 (359)
T ss_dssp EEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHH
T ss_pred EEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4579999999999999999999999999999986422
Q ss_pred ---------------------------------ceeeecCCCcEEEEe-eCCCCccCC-CCEEEEEecCC
Q 000086 724 ---------------------------------CMPLLSPASGVLQFK-MAEGQAMQA-GELIARLDLDD 758 (2304)
Q Consensus 724 ---------------------------------~~~l~ap~~G~V~~i-~~~G~~v~~-G~~La~l~~~~ 758 (2304)
...|+||.+|+|..+ +.+|+.|.+ |++|++|...+
T Consensus 137 ~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~ 206 (359)
T 3lnn_A 137 DYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLS 206 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCC
Confidence 257999999999998 999999999 99999987544
No 136
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.24 E-value=0.0003 Score=74.19 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=54.0
Q ss_pred eCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eC---CCCccC---CCC-EEEEEecCCCC
Q 000086 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MA---EGQAMQ---AGE-LIARLDLDDPS 760 (2304)
Q Consensus 692 APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~---~G~~v~---~G~-~La~l~~~~~~ 760 (2304)
..+.|.|+-+.. ++|++|++||++++||+|||..+|.||.+|+|..+ .. .-+.|+ -|+ =|++|++.+++
T Consensus 28 q~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~~ 105 (125)
T 3klr_A 28 QEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPS 105 (125)
T ss_dssp HHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCGG
T ss_pred HhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCHH
Confidence 456788988877 79999999999999999999999999999999888 22 233333 243 47777776653
No 137
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=97.22 E-value=0.0012 Score=76.27 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=71.9
Q ss_pred CCccCHHHHHHHHHHHHHhhcc-CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhh
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE-ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAW 2056 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~-~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~ 2056 (2304)
+|.+.+..+..+.+.+..+... .-||++..|+|| |..-.+-.|.+++...+.|+++++. +-.+-||+|
T Consensus 45 ~G~I~~~~a~~i~~~L~~l~~~~~k~I~l~INSPG----------Gsv~a~~~I~~~i~~~~~pV~t~v~-g~AAS~g~~ 113 (215)
T 2f6i_A 45 TDEINKKTADELISQLLYLDNINHNDIKIYINSPG----------GSINEGLAILDIFNYIKSDIQTISF-GLVASMASV 113 (215)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE-EEECHHHHH
T ss_pred ccEECHHHHHHHHHHHHHHHhCCCCcEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEe-eEhHhHHHH
Confidence 6788888888888888766543 389999999999 3445677888999999999999998 233444666
Q ss_pred hhcccccCCccceeecccCcEEEeeCccch
Q 000086 2057 VVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2057 vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+++.... .. .+|.|++++++..|.+.
T Consensus 114 Ia~agd~--g~--i~a~p~s~i~ih~p~~~ 139 (215)
T 2f6i_A 114 ILASGKK--GK--RKSLPNCRIMIHQPLGN 139 (215)
T ss_dssp HHHTSCT--TC--EEECTTCEEESSCTTCS
T ss_pred HHHcCCc--cc--EEEcCCCEEEEeccccc
Confidence 6666532 22 68999999999998764
No 138
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.20 E-value=0.00026 Score=86.63 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=62.0
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcccc-------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm------------------------------------------- 723 (2304)
...|.+|.+|+|.++.|++||+|++||+|+.|+.-..
T Consensus 31 ~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~ 110 (341)
T 3fpp_A 31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQA 110 (341)
T ss_dssp EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSS
T ss_pred EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4579999999999999999999999999999986311
Q ss_pred ------------------------------------------ceeeecCCCcEEEEe-eCCCCccCCCCE---EEEEecC
Q 000086 724 ------------------------------------------CMPLLSPASGVLQFK-MAEGQAMQAGEL---IARLDLD 757 (2304)
Q Consensus 724 ------------------------------------------~~~l~ap~~G~V~~i-~~~G~~v~~G~~---La~l~~~ 757 (2304)
...|+||.+|+|..+ +.+|+.|.+|+. |++|...
T Consensus 111 ~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 111 VSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 190 (341)
T ss_dssp STTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecC
Confidence 145999999999988 999999999987 8887644
Q ss_pred C
Q 000086 758 D 758 (2304)
Q Consensus 758 ~ 758 (2304)
+
T Consensus 191 ~ 191 (341)
T 3fpp_A 191 S 191 (341)
T ss_dssp S
T ss_pred C
Confidence 3
No 139
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=97.19 E-value=0.0025 Score=73.67 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=72.9
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+.+..+....+.+..+... .-+|++..|+|| |....|-.|.+++...+.|+++++. +-.+.||+
T Consensus 51 ~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPG----------G~v~ag~~I~~~i~~~~~pV~t~v~-G~AaS~G~ 119 (218)
T 1y7o_A 51 TGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG----------GSVSAGLAIVDTMNFIKADVQTIVM-GMAASMGT 119 (218)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE-EEEETHHH
T ss_pred eCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC----------CCHHHHHHHHHHHHhcCCCEEEEEc-cEeHHHHH
Confidence 5788888999999888877654 579999999999 3445677889999999999999997 33455577
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++....+ . .+|.|+|++++-.|.+.
T Consensus 120 ~Ia~a~d~g--~--r~a~p~a~igih~p~~g 146 (218)
T 1y7o_A 120 VIASSGAKG--K--RFMLPNAEYMIHQPMGG 146 (218)
T ss_dssp HHHTTSCTT--C--EEECTTCEEECCCCC--
T ss_pred HHHHcCCcC--c--EEEcCCcEEEEeccccc
Confidence 777776432 2 68899999999999754
No 140
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=97.14 E-value=0.0024 Score=74.40 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=71.5
Q ss_pred CCccCHHHHHHHHHHHHHhhccCC-CEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcC-CCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNREEL-PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM-MAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~l-PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~-~ge~~G-G 2054 (2304)
.|.+.+..+....+.++.+...+. +|++-.|+|| |.+..+..+.+++...++|++++|.| +|-+.| |
T Consensus 16 ~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~inspG----------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG 85 (230)
T 3viv_A 16 KGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG----------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAG 85 (230)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSC----------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHH
T ss_pred eCEECHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC----------cCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHH
Confidence 478999999999999988876554 5666689998 34456678899999999999999943 455544 6
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|+++.+ |. .+|.|++++|..+|-
T Consensus 86 ~~ia~a~----d~--~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 86 TYIALGS----HL--IAMAPGTSIGACRPI 109 (230)
T ss_dssp HHHHHTS----SE--EEECTTCEEECCCEE
T ss_pred HHHHHhc----Cc--eeECCCCEEEeccce
Confidence 7777764 55 899999999988886
No 141
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=96.98 E-value=0.0045 Score=70.78 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.+.+..+....+.+..+... .-|+++..|+|| |..-.|-.|.+.+...+.|+.+++. |.+.+ |
T Consensus 33 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG----------G~v~~~~~I~~~i~~~~~~V~t~~~--G~AaSag 100 (203)
T 3qwd_A 33 GSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG----------GSVTAGFAIYDTIQHIKPDVQTICI--GMAASMG 100 (203)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC----------CCHHHHHHHHHHHHHhcCCcEEEEe--eeehhHH
Confidence 7899999999998888887654 578999999999 3445677889999999999999998 44444 7
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+|+++.... .. .||.|+|++++-.|-+.
T Consensus 101 ~~i~~ag~~--g~--r~~~p~a~imiHqP~~~ 128 (203)
T 3qwd_A 101 SFLLAAGAK--GK--RFALPNAEVMIHQPLGG 128 (203)
T ss_dssp HHHHHTSCT--TC--EEECTTCEEECCCCSSS
T ss_pred HHHHHcCCc--Ce--EEEcCCceEEEeccccc
Confidence 777766532 13 78999999999988764
No 142
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=96.96 E-value=0.0049 Score=70.75 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=71.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+.+..+....+.+..+.. ..-+|++..|+|| |-.-.+-.|.+++...+.|+++++. +-.+.||+
T Consensus 33 ~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG----------G~v~a~~~I~~~i~~~~~pV~~~v~-g~AaS~g~ 101 (208)
T 2cby_A 33 GSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG----------GSISAGMAIYDTMVLAPCDIATYAM-GMAASMGE 101 (208)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHCSSCEEEEEE-EEEETHHH
T ss_pred cCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEC-cEeHHHHH
Confidence 688899999999999987765 3579999999999 3334567788999999999999997 23445567
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++.... -..||.|++++++..|.+.
T Consensus 102 ~Ia~agd~----~~~~a~p~a~igih~p~~~ 128 (208)
T 2cby_A 102 FLLAAGTK----GKRYALPHARILMHQPLGG 128 (208)
T ss_dssp HHHHTSCT----TCEEECTTCEEECCCC---
T ss_pred HHHhCCCc----CCEEEcCCcEEEEeccccc
Confidence 77776532 1268999999999999753
No 143
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=96.91 E-value=0.0051 Score=77.54 Aligned_cols=112 Identities=10% Similarity=0.011 Sum_probs=79.4
Q ss_pred HHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecC--CCCC--cCeEE
Q 000086 174 IGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASW--GGGG--KGIRK 248 (2304)
Q Consensus 174 ~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~--GgGG--kGIr~ 248 (2304)
+..|.++.++++...|-.. ......+ ...++.+|+.+.++++| |||++|+.. |+-| -||++
T Consensus 9 y~~K~ll~~~~~~~~~~~~-------~~~~~~~-------~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l 74 (425)
T 3mwd_A 9 QTGKELLYKFICTTSAIQN-------RFKYARV-------TPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGV 74 (425)
T ss_dssp HHHHHHHHHHCCCSSCBCS-------TTCCEEE-------CTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEE
T ss_pred HHHHHHHHHhccccCCccC-------CcceEEe-------CCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEE
Confidence 5678999999993222000 0000011 11468899999999999 999999976 3322 38999
Q ss_pred ECCHHHHHHHHHHHHhhCC--------CCcEEEEEeccc--cceeeEEEEEcCCCCEEEee
Q 000086 249 VHNDDEVRALFKQVQGEVP--------GSPIFIMKVASQ--SRHLEVQLLCDQYGNVAALH 299 (2304)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~--------~~~i~VEeyI~g--~reieVqvl~D~~G~vi~l~ 299 (2304)
+.+++|+.+++.++..... -..++||++++. ++|+-+.+..|..|.++.++
T Consensus 75 ~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s 135 (425)
T 3mwd_A 75 NLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH 135 (425)
T ss_dssp EECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEE
Confidence 9999999999988764321 135899999964 48999999999887776553
No 144
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=96.90 E-value=0.00032 Score=87.09 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=62.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcccc-------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm------------------------------------------- 723 (2304)
...|.+|.+|+|.+++|++||.|++||+|++|+.-..
T Consensus 43 ~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~ 122 (369)
T 1vf7_A 43 IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYL 122 (369)
T ss_dssp EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred EEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 3468999999999999999999999999999975211
Q ss_pred --------------ceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCC
Q 000086 724 --------------CMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDD 758 (2304)
Q Consensus 724 --------------~~~l~ap~~G~V~~i-~~~G~~v~~G--~~La~l~~~~ 758 (2304)
...|+||++|+|..+ +.+|+.|.+| ++|++|...+
T Consensus 123 ~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 123 QSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred HHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence 258999999999888 9999999995 8999987544
No 145
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=96.87 E-value=0.001 Score=71.44 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=41.3
Q ss_pred CCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 693 ETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 693 PmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
...|.|+-+.. ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 51 ~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~Vvev 97 (143)
T 3mxu_A 51 EQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEI 97 (143)
T ss_dssp HHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred hhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 34677877766 78999999999999999999999999999999888
No 146
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=96.87 E-value=0.0049 Score=69.94 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+.+..+....+.+..+.. ..-++++..|+|| |..-.+-.|.+++...+.|+.+++. +-.+.||+
T Consensus 32 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG----------G~v~a~~~I~~~i~~~~~pV~~~v~-g~AaS~g~ 100 (193)
T 1yg6_A 32 TGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG----------GVITAGMSIYDTMQFIKPDVSTICM-GQAASMGA 100 (193)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE-EEEETHHH
T ss_pred cCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC----------CCHHHHHHHHHHHHhcCCCEEEEEe-eeHHHHHH
Confidence 578889999999988887654 3579999999999 3445677788999999999999997 33444567
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++.... . ..+|.|++++++..|.+.
T Consensus 101 ~Ia~ag~~--~--~r~a~p~s~i~ih~p~~~ 127 (193)
T 1yg6_A 101 FLLTAGAK--G--KRFCLPNSRVMIHQPLGG 127 (193)
T ss_dssp HHHHTSCT--T--CEEECTTCEEEECCCEEE
T ss_pred HHHHCCCc--C--cEEEecCcEEEEEecccc
Confidence 77766532 1 269999999999999754
No 147
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.85 E-value=0.00081 Score=71.89 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=42.6
Q ss_pred eCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 692 APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
....|.|+-+.. ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 45 q~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vvev 92 (137)
T 3tzu_A 45 VEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEV 92 (137)
T ss_dssp HHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEE
T ss_pred HhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEe
Confidence 455788888766 79999999999999999999999999999999887
No 148
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=96.78 E-value=0.0074 Score=71.87 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+.+..+..+.+.+..... ..-+|++..|+|| |..-.|-.|.+++...+.|+.+++. +-.+-||+
T Consensus 88 ~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG----------GsV~ag~aIyd~I~~~k~pV~t~v~-G~AASaG~ 156 (277)
T 1tg6_A 88 MGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCV-GQAASMGS 156 (277)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSCSCEEEEEE-EEEETHHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEc-cEeHHHHH
Confidence 578888899888877776433 4689999999999 4445677889999999999999998 23344567
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++....+ ..||.|++++++..|.+.
T Consensus 157 ~Ia~Agd~g----kr~a~P~S~ImihqP~~g 183 (277)
T 1tg6_A 157 LLLAAGTPG----MRHSLPNSRIMIHQPSGG 183 (277)
T ss_dssp HHHHTSCTT----CEEECTTCEEEECCCCCC
T ss_pred HHHHCCCcC----CEEEecCCEEEEeccccc
Confidence 776665321 269999999999999764
No 149
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=96.66 E-value=0.0086 Score=68.37 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.+.+..+....+.+..+... .-|+++..|+|| |-.-.+-.|.+.+...+.|+.+++. |.+.+ |
T Consensus 36 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~~~~~I~~~i~~~~~~v~t~~~--G~AaS~g 103 (201)
T 3p2l_A 36 NGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG----------GMVTAGMGVYDTMQFIKPDVSTICI--GLAASMG 103 (201)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHhCCCeEEEEc--CEehhHH
Confidence 6788999898888888776553 579999999999 3445677889999999999999999 44444 6
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+|+++.... .. .|+.|+|++++-.|.+.
T Consensus 104 ~~i~~ag~~--g~--r~~~p~a~imiH~p~~~ 131 (201)
T 3p2l_A 104 SLLLAGGAK--GK--RYSLPSSQIMIHQPLGG 131 (201)
T ss_dssp HHHHHTSST--TC--EEECTTCEEEECCCEEE
T ss_pred HHHHHcCcc--CC--EEEcCCCeEEEeccccc
Confidence 676666532 12 68899999999999764
No 150
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.56 E-value=0.00036 Score=86.31 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
....|.+|.+|+|.+++|++||.|++||+|++|+.-
T Consensus 31 ~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 31 NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 356799999999999999999999999999999863
No 151
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.56 E-value=0.0032 Score=77.93 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=61.4
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCC
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM----Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~~ 759 (2304)
.-++||..| +++..++.|+.|++||+|+.|+.| +++.+|+||.+|+|..+ .....|.+|+.|+.|....+
T Consensus 268 ~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~-~~~~~V~~Gd~l~~ia~~~~ 341 (354)
T 3cdx_A 268 AYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG-AGPGRVTRGDAVAVVMEDYN 341 (354)
T ss_dssp GEEECSSCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE-ECSSEECTTCEEEEEEEECC
T ss_pred EEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE-eCCCccCCCCEEEEEeeecC
Confidence 457899999 788889999999999999999996 89999999999998655 46778999999999976643
No 152
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=96.54 E-value=0.001 Score=72.69 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=58.2
Q ss_pred CCeeeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEE-------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQF------------------------- 737 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~------------------------- 737 (2304)
|..|.||+.|+|+.+. +..|.|-+ |+-++...+ +..++||.+|+|..
T Consensus 7 ~~~i~aP~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGid 82 (154)
T 2gpr_A 7 NLKVLAPCDGTIITLD-EVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLD 82 (154)
T ss_dssp CEEEECSSSEEEECGG-GSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSS
T ss_pred CCEEEecCCeEEEEee-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcc
Confidence 4679999999999984 88888888 899998887 47999999999986
Q ss_pred ----------e-eCCCCccCCCCEEEEEec
Q 000086 738 ----------K-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 738 ----------i-~~~G~~v~~G~~La~l~~ 756 (2304)
+ +++||.|.+||+|+++.+
T Consensus 83 Tv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 83 TVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp GGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred hhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence 3 889999999999999975
No 153
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=96.45 E-value=0.01 Score=80.07 Aligned_cols=113 Identities=9% Similarity=-0.016 Sum_probs=80.6
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecCCCCCc----CeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGK----GIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGk----GIr 247 (2304)
-+..|.++.++++|..+-.. . .. ...+ ..-++.+|+.+.++++| ||||+|+-.-.||| ||+
T Consensus 8 Ey~aK~ll~~~~~~~~~~~~-----~-~~-~~~v-------~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVk 73 (829)
T 3pff_A 8 EQTGKELLYKFICTTSAIQN-----R-FK-YARV-------TPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVG 73 (829)
T ss_dssp HHHHHHHHHHHCCCSSCBCS-----T-TC-CEEE-------CTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCE
T ss_pred HHHHHHHHHHhCcccccccc-----C-Cc-eEEe-------CCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEE
Confidence 35688999999998322110 0 00 0011 11467899999999998 99999996644443 789
Q ss_pred EECCHHHHHHHHHHHHhhCC--------CCcEEEEEeccc--cceeeEEEEEcCCCCEEEee
Q 000086 248 KVHNDDEVRALFKQVQGEVP--------GSPIFIMKVASQ--SRHLEVQLLCDQYGNVAALH 299 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~~--------~~~i~VEeyI~g--~reieVqvl~D~~G~vi~l~ 299 (2304)
++.|++|+.+++.++..... -..++||++++. ++|+-+.+..|..|.++.+.
T Consensus 74 L~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 74 VNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH 135 (829)
T ss_dssp EEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEE
Confidence 99999999999988764321 135899999964 48999999999887776553
No 154
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=96.40 E-value=0.0082 Score=74.44 Aligned_cols=153 Identities=20% Similarity=0.257 Sum_probs=88.1
Q ss_pred cCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-------cc--eeeEEEEEcCCCCEEEee
Q 000086 229 VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-------SR--HLEVQLLCDQYGNVAALH 299 (2304)
Q Consensus 229 IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g-------~r--eieVqvl~D~~G~vi~l~ 299 (2304)
-+.+.|+||..|+.|+||+++++.+++.+.++.. ...++||+||+. ++ ++.+-++....-. +.++
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~-----~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~-vy~y 219 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ-----GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYN-IYLY 219 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHHH-----TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCC-EEEC
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc-----CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCE-EEEE
Confidence 4689999999999999999999999998876542 357999999974 33 4445455433111 1111
Q ss_pred ----cccc-------------------ccccccceEE---EeCC---------------CCCCCHHHHHHHHHHHHHHHH
Q 000086 300 ----SRDC-------------------SVQRRHQKII---EEGP---------------ITVAPLETVKKLEQAARRLAK 338 (2304)
Q Consensus 300 ----~Rdc-------------------Svqrr~qKii---eeaP---------------a~~l~~e~~~~m~e~A~rlak 338 (2304)
.|-| ++|..+..-. +.+- .......+..+|.+++.....
T Consensus 220 ~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~ 299 (380)
T 3tig_A 220 REGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLS 299 (380)
T ss_dssp SCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHH
T ss_pred cCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 1111 2232211000 0000 001123456777777666555
Q ss_pred HC---------Cc--eeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcC
Q 000086 339 CV---------NY--VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2304)
Q Consensus 339 al---------Gy--~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G 393 (2304)
++ .+ -....+||++| ++.++++||+|..++-...++ -+|.+..++++..
T Consensus 300 a~~~~i~~~~~~~~~FEl~G~D~lid-~~l~~wllEVN~~P~~~q~~i-----~~l~~~~~~iavd 359 (380)
T 3tig_A 300 CLEPAISTKYLPYHSFQLFGFDFMVD-KNLKVWLIEVNGAPACAQKLY-----AELCKGIVDLAIS 359 (380)
T ss_dssp HHHHHHCCTTSSSEECEEEEEEEEEB-TTCCEEEEEEESSCCCCTTTH-----HHHHHHHHHHTTT
T ss_pred HHHHHhhhcccCCceEEEEeEEEEEc-CCCcEEEEEEeCCCCccHHhH-----HHHHHHHHHHhcc
Confidence 41 23 26778999999 578999999999988654322 2367777777765
No 155
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=96.27 E-value=0.002 Score=70.95 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=60.3
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEEe--------------------
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK-------------------- 738 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~i-------------------- 738 (2304)
++.++..|.||+.|+|+.+ .+..|.|-+ |+-++.... +..++||.+|+|..+
T Consensus 8 ~p~~~~~i~aP~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiH 83 (162)
T 1ax3_A 8 NEIGEEVFVSPITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIH 83 (162)
T ss_dssp CTTCCSSCCCCCSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEE
T ss_pred CCCCCCEEEecCceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEE
Confidence 3445667999999999997 788888888 899998887 778999999999754
Q ss_pred ----------------eCCCCccCCCCEEEEEecC
Q 000086 739 ----------------MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 739 ----------------~~~G~~v~~G~~La~l~~~ 757 (2304)
+++||.|.+||+|+++.++
T Consensus 84 IGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (162)
T 1ax3_A 84 FGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp CSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHH
T ss_pred ECccchhcCCCccEEEEeCCCEEcCCCEEEEECHH
Confidence 6689999999999999754
No 156
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.02 E-value=0.0069 Score=65.79 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 694 TPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 694 mPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.-|.|+-+.. ++|++|++|+++++||++|...+|.||.+|+|..+
T Consensus 57 ~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vvev 102 (155)
T 3hgb_A 57 ALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV 102 (155)
T ss_dssp HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 3567776655 78999999999999999999999999999999887
No 157
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.00 E-value=0.013 Score=71.93 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=59.5
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCC
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM----Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~ 758 (2304)
+..-|+||..| ++...|+.||.|++||+|++|..+ +...+|+||.+|+|... ...-.|.+|+.|+.|...+
T Consensus 256 ~~~~v~A~~~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~-~~~~~V~~G~~l~~Ia~~~ 330 (331)
T 3na6_A 256 GDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR-HFPGMIKSGDCAAVIGVVE 330 (331)
T ss_dssp SCCCEECSSCE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE-ECSSEECTTCEEEEEECBC
T ss_pred CcEEEeCCCCe-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE-eCCCccCCCCEEEEEeccC
Confidence 34568999999 667789999999999999999986 56789999999998665 2346788999999987543
No 158
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.95 E-value=0.0037 Score=68.75 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=56.7
Q ss_pred CeeeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEEe-------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK------------------------- 738 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~i------------------------- 738 (2304)
..|.||+.|+|+.+. +..|.|-+ |+-++.... +..++||.+|+|..+
T Consensus 13 ~~i~aP~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidT 88 (161)
T 1f3z_A 13 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT 88 (161)
T ss_dssp EEEECSSCEEEEEGG-GSSSHHHHTTSSCEEEEEEEC---SSEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSG
T ss_pred cEEEecCCeEEEEeE-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccc
Confidence 469999999999976 78888887 888988887 378999999999755
Q ss_pred -----------eCCCCccCCCCEEEEEecC
Q 000086 739 -----------MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 739 -----------~~~G~~v~~G~~La~l~~~ 757 (2304)
+++||.|.+||+|+++.++
T Consensus 89 V~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 89 VELKGEGFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEECHH
T ss_pred hhcCCCccEEEEeCcCEECCCCEEEEECHH
Confidence 6789999999999999753
No 159
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=95.95 E-value=0.036 Score=63.33 Aligned_cols=105 Identities=11% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.||.+.+..+.....-+...+.+ .-||.+..|+||-+-....+.-|-.-.|-.|.+.+...+.|+.+++. |-+.+
T Consensus 33 l~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~~~~V~t~~~--G~AaS~ 110 (205)
T 4gm2_A 33 LSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCL--GKAYGI 110 (205)
T ss_dssp ECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHSSSCEEEEEE--EEEETH
T ss_pred ECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCEEEEEE--eeehhH
Confidence 47889998888877666655544 57999999999933211122225667788999999999999999999 65555
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccchh
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
|+.+++....+ . .++.|+|++-+-.|.+.+
T Consensus 111 as~il~aG~~g--k--R~~lP~a~iMIHqP~~~~ 140 (205)
T 4gm2_A 111 ACILASSGKKG--Y--RFSLKNSSFCLNQSYSII 140 (205)
T ss_dssp HHHHHTTSCTT--C--EEECTTCEEEECCCCCCC
T ss_pred HHHHHhcCCCC--C--EEecCCCEEEEecCcccc
Confidence 55555554322 2 688899999988887653
No 160
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=95.56 E-value=0.021 Score=76.36 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=67.2
Q ss_pred cCeEEEEEEEe-eCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeec---------------ccceEEE--E
Q 000086 613 EGSKYRIDMVR-RGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE---------------AAGTRLL--I 674 (2304)
Q Consensus 613 ~g~~y~v~v~~-~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee---------------~~~~~v~--v 674 (2304)
+|..+.+.... .+...+.+.+||..+.+.+... ++.+.+.++|.++.+..... .....+. .
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~ 619 (681)
T 3n6r_A 541 DGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKI-SGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPM 619 (681)
T ss_dssp TSCEEEEEECCCTTCSEEEEEETTEEEEEEEEEE-TTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCS
T ss_pred CCcEEEEEEEecCCCeEEEEEECCEEEEEEEEEe-CCEEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCC
Confidence 44555444221 1333477888888888877655 46788888888887765421 0111111 1
Q ss_pred eCce-----------------eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 675 DGRT-----------------CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 675 ~g~t-----------------~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.|+- +.++...-...|+||..|+|.+++|++||.|+.||+|++||
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 1111 11112222356999999999999999999999999999986
No 161
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=95.21 E-value=0.042 Score=63.96 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=35.5
Q ss_pred ceEEEEE---cCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYV---TGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~v---tg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+|++| .|.+.|+|++++.-||+++|.+++.++..+|.
T Consensus 68 ~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 68 IPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI 109 (230)
T ss_dssp SCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEE
T ss_pred CCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccce
Confidence 6999999 99999999999999999999999988866654
No 162
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=95.14 E-value=0.23 Score=65.39 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHhhcc-CC-CEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhc
Q 000086 1982 FPDSATKTAQALMDFNRE-EL-PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVV 2059 (2304)
Q Consensus 1982 ~p~sa~K~a~~i~~~~~~-~l-PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~ 2059 (2304)
....+..+.++++.+... ++ -||+-.|++|.+. .... .....+..+.....|++++|- +-.+.||.|+++
T Consensus 320 ~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~---~~~~----~i~~~i~~l~~~~kPVia~v~-g~AasgG~~iA~ 391 (593)
T 3bf0_A 320 GNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSV---TASE----VIRAELAAARAAGKPVVVSMG-GMAASGGYWIST 391 (593)
T ss_dssp TSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECH---HHHH----HHHHHHHHHHHTTCCEEEEEE-EEEETHHHHTTT
T ss_pred chhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCH---HHHH----HHHHHHHHHHhCCCCEEEEEC-CChHHHHHHHHH
Confidence 455677888888888664 43 4666678887332 2111 234566778888999999997 345556777776
Q ss_pred ccccCCccceeecccCcEEEeeCc
Q 000086 2060 DSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2060 ~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
.+ |. ++|.|++.+|..++
T Consensus 392 aa----D~--iva~p~a~~Gsigv 409 (593)
T 3bf0_A 392 PA----NY--IVANPSTLTGSIGI 409 (593)
T ss_dssp TC----SE--EEECTTCEEECCCE
T ss_pred hC----CE--EEECCCCEeeccee
Confidence 64 76 89999999998774
No 163
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.89 E-value=0.034 Score=69.17 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=56.7
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc------cccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV------MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa------MKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~ 756 (2304)
..-++||..|.+ ...|+.||.|++||+|++|.- -....+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 290 ~~~v~A~~~Gl~-~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~-~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 290 YRKFHAPKAGMV-EYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH-FASASVHQGTELYKVMT 363 (368)
T ss_dssp EEEEECSSCEEE-EECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE-CSSSEECTTCEEEEEEE
T ss_pred cEEEecCCCEEE-EEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE-eCCCccCCCCEEEEEee
Confidence 346899999955 589999999999999999998 346689999999998655 33368999999998864
No 164
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.16 E-value=0.023 Score=57.66 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCC
Q 000086 712 DTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGS 771 (2304)
Q Consensus 712 G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~ 771 (2304)
|...+.+|.|+....|.||.+|+|..+ +++|+.|++||+|++|+.... ...-..||.|.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~-~~~i~Ap~~G~ 64 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKM-IMTLNVQERGR 64 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTE-EEEEECSSSEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecce-EEEEEcCCCEE
Confidence 455678899999999999999999888 999999999999999986432 11223455554
No 165
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=94.14 E-value=0.032 Score=74.55 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=19.0
Q ss_pred eeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEe---------cCCceEEEeCCeeEEEEeeecccceEEEEeCce
Q 000086 608 VSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTL---------RDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2304)
Q Consensus 608 vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l---------~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t 678 (2304)
+.+.++|..|.+.+.+.+ +.++|..+|..+.+..... ..+.+.--+.|+-..+.+++ +-.+.-+..-
T Consensus 555 ~~~~~~G~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~---Gd~V~~g~~l 630 (675)
T 3u9t_A 555 LVSRVDGVTRRSAALRRG-RQLFLEWEGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRVLVEP---GQTVEAGATL 630 (675)
T ss_dssp EEEEETTEEEEEEEEEET-TEEEEECSSSEEEEEECCHHHHHC-------------------------------------
T ss_pred EEEEECCEEEEEEEEEeC-CEEEEEECCeEEEEEEcCcccccccccCCCCeEECCCCEEEEEEEeCC---CCEEcCCCEE
Confidence 445556666665555443 3555666665555543210 11223333444433333322 1112222222
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+.++...-...|+||..|+|.+++|++||.|+.||+|++||.
T Consensus 631 ~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 631 VVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp ------------------------------------------
T ss_pred EEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 233333335679999999999999999999999999999984
No 166
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*
Probab=93.04 E-value=1.1 Score=52.03 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=66.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhh---------hhhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++++......++++.+.+..+-+|+|.-.+ .|+.|.+- ......+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 103 (233)
T 3r6h_A 26 NVLGPTMQQALNEAIDAADRDNVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACT-- 103 (233)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 57889999999999998877667777775542 26666431 1122344556788899999999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ .+|.++++++.
T Consensus 104 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 130 (233)
T 3r6h_A 104 GHAIAMGAFLLCS----GDH--RVAAHAYNVQA 130 (233)
T ss_dssp SEEETHHHHHHTT----SSE--EEECTTCCEEC
T ss_pred CcchHHHHHHHHh----CCE--EEEeCCcEEEC
Confidence 55555 5544544 477 78888888775
No 167
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=92.62 E-value=0.14 Score=72.06 Aligned_cols=120 Identities=21% Similarity=0.415 Sum_probs=91.3
Q ss_pred CCeEEEEEEEEecC----C--ceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCC
Q 000086 634 NESEIEAEIHTLRD----G--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGS 707 (2304)
Q Consensus 634 ng~~~~V~v~~l~d----g--~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd 707 (2304)
.|+.+.+.+...++ | .+.+.+||+.+.+.+.+...... ..........++..|.|||||+|++|+|++||
T Consensus 1022 ~g~~~~i~l~~~~~~~~~g~~~~~~e~nG~~~~v~v~~~~~~~~----~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd 1097 (1150)
T 3hbl_A 1022 KGKRLIIKLETISEPDENGNRTIYYAMNGQARRIYIKDENVHTN----ANVKPKADKSNPSHIGAQMPGSVTEVKVSVGE 1097 (1150)
T ss_dssp TTEEEEEEEEEECCCCTTSEEEEEEEETTEEEEEEEECCCSSSC----CCCCCBCCTTCSSEEECSSSEEEEEECCCTTC
T ss_pred CCcEEEEEecccCCCCCCCceEEEEEECCeEEEEeccccccccc----ccccccCCCCCCceeecCceEEEEEEEeCCCC
Confidence 35555555543321 1 25667777777777665432211 01111234567889999999999999999999
Q ss_pred EEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 708 HIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 708 ~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|++||+|++||+|||+++|+||.+|+|.++ +++|+.|++|++|++|+.+
T Consensus 1098 ~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1098 TVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp EECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred EECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 9999999999999999999999999999999 9999999999999999865
No 168
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=92.35 E-value=0.55 Score=55.83 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=55.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec----------ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...-
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~vG~~~A~ellltg~~i~A~e-A~~~ 178 (267)
T 3hp0_A 100 PYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKAHYMTLMTKPISVQE-ASEW 178 (267)
T ss_dssp SSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCCBCHHH-HHHH
T ss_pred CCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHHC
Confidence 3699999999999999999999999999999875543 2222333333221 00111222222 2368
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.+++++++.+..+.+.+.
T Consensus 179 GLV~~vv~~~~~~~~~~a~~la 200 (267)
T 3hp0_A 179 GLIDAFDAESDVLLRKHLLRLR 200 (267)
T ss_dssp TSSSCBCSCTTHHHHHHHHHHT
T ss_pred CCcceecCCHHHHHHHHHHHHH
Confidence 9999999865544444444444
No 169
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=92.17 E-value=0.084 Score=50.94 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=32.3
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
....|+||..|+|.++.+++|+.|.+|++|+.|+.
T Consensus 42 ~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 42 ASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp SCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred ceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 35689999999999999999999999999999974
No 170
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=91.71 E-value=0.054 Score=72.40 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=59.9
Q ss_pred eeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccCC
Q 000086 606 SQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDH 685 (2304)
Q Consensus 606 ~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~ 685 (2304)
..+.+.+||+.|.+++...+...... . .........+.+...+.|.-..+.+++. -.+.-+..-+.++...
T Consensus 614 ~~~~vevnG~~~~v~v~~~~~~~~~~-----~-~~~a~~~~~~~v~ap~~G~V~~v~V~~G---d~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 614 RQVFFELNGQLRSILVKDTQAMKEMH-----F-HPKALKDVKGQIGAPMPGKVIDIKVVAG---AKVAKGQPLCVLSAMK 684 (718)
T ss_dssp EEEEEESSSSEEEEEEECGGGTCC-----------CCCCCSSSCEECSSCEEEEEECSCTT---CCBCTTCCCEEEESSS
T ss_pred EEEEEEECCEEEEEEEeccCcccccc-----c-cccCCCCCCceEeCCCCeEEEEEEeCCC---CeeCCCCEEEEEeccc
Confidence 45778889999999987654221110 0 0000001122344445565555444321 1111111112222233
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
-...|+||..|+|.++.|++|+.|+.||+|++||
T Consensus 685 me~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 685 METVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred ceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 3467999999999999999999999999999875
No 171
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=91.65 E-value=0.46 Score=55.57 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhc-cCCC-EEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHc-CCCCEEEEEcCCCcCCchhhhhccc
Q 000086 1985 SATKTAQALMDFNR-EELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRT-YKQPVFVYIPMMAELRGGAWVVVDS 2061 (2304)
Q Consensus 1985 sa~K~a~~i~~~~~-~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~-~~vP~i~~I~~~ge~~GGa~vv~~~ 2061 (2304)
+.....++++.+.. .++- ||+-.|++|..... .......+..+.. +..|++++|- +-.+.||.|+++.
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~-------~~~i~~~l~~~~~~~~kPVia~v~-g~a~~gG~~lA~a- 100 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYE-------SAEIHKKLEEIKKETKKPIYVSMG-SMAASGGYYISTA- 100 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHH-------HHHHHHHHHHHHHHHCCCEEEEEE-EEEETHHHHHHTT-
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHH-------HHHHHHHHHHHHHhCCCeEEEEEC-CeehHhHHHHHHh-
Confidence 45677778877765 3444 45557877733221 1233455666666 7899999997 2344556666665
Q ss_pred ccCCccceeecccCcEEEeeCc
Q 000086 2062 RINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2062 ~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
+|. +||.|++++|..|.
T Consensus 101 ---~D~--i~a~~~a~~g~~Gv 117 (240)
T 3rst_A 101 ---ADK--IFATPETLTGSLGV 117 (240)
T ss_dssp ---SSE--EEECTTCEEECCCC
T ss_pred ---CCe--eEECCCCeEeccce
Confidence 476 89999999988765
No 172
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=91.59 E-value=0.1 Score=49.96 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++.+++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 44 TVKIPSPVRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EEECCCCCCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 3579999999999999999999999999999873
No 173
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=91.33 E-value=0.083 Score=49.75 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=31.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|.|.++.+++|+.|++|++|+.|..
T Consensus 36 ~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 36 EIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred EEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 4579999999999999999999999999999864
No 174
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=91.17 E-value=0.13 Score=49.60 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=30.1
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
..|+||..|.|.++.+++|+.|++|++|+.||
T Consensus 49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 56999999999999999999999999999985
No 175
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=91.12 E-value=0.35 Score=59.22 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=54.9
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEc----cccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEV----MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa----MKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~ 756 (2304)
.++||..|.+. ..++.|+.|++||+|+++-- .+...+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 259 ~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~-~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 259 QLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI-RSAMYVQGNEEVAILAR 328 (332)
T ss_dssp EEECSSSEEEE-ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE-ECSEEECTTCEEEEEEE
T ss_pred EEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE-eCCCeeCCCCEEEEEee
Confidence 57899998555 78999999999999999965 678899999999998544 35667899999998864
No 176
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=91.02 E-value=6.3 Score=47.01 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=67.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|..-. ..........++..+..+.+|+|+.|-
T Consensus 45 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 123 (277)
T 4di1_A 45 NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVT- 123 (277)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 58889999999999998876 46777777654 3488774311 112234456778889999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ ++|.++++++.
T Consensus 124 G~a~GgG~~Lalac----D~--ria~~~a~f~~ 150 (277)
T 4di1_A 124 GYALGAGLTLALAA----DW--RVSGDNVKFGA 150 (277)
T ss_dssp SEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred CeEehhHHHHHHhC----CE--EEEcCCCEEEC
Confidence 34444455555554 77 88889988876
No 177
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=90.91 E-value=0.22 Score=59.04 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=59.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~e-A~~ 179 (263)
T 3lke_A 101 PKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEE-ALR 179 (263)
T ss_dssp SSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 3699999999999999999999999999999876543 1223444444322 00111222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.+++|+.+..+.+++|..-+
T Consensus 180 ~GLv~~vv~~~~~l~~~a~~~a~~l 204 (263)
T 3lke_A 180 LGLIQEICENKQELQERVKNYLKAV 204 (263)
T ss_dssp HTSSSEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCcEecCChhHHHHHHHHHHHHH
Confidence 8999999986666666666665443
No 178
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=90.83 E-value=0.12 Score=61.66 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh-----------HHHHHhhcc-cc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF-----------SALNKLLGR-EV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~-----------~al~~~lG~-~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-+-+.+|. .. .-+...+.+.+ ..
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~e-A~ 185 (275)
T 1dci_A 107 PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADE-AL 185 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHH-HH
T ss_pred CCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHH-HH
Confidence 369999999999999999999999999999987654321 123333443 11 00111111111 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.-|++|.++++..+..+.+++|.
T Consensus 186 ~~GLv~~vv~~~~~l~~~a~~~a 208 (275)
T 1dci_A 186 DSGLVSRVFPDKDVMLNAAFALA 208 (275)
T ss_dssp HHTSSSEEESSHHHHHHHHHHHH
T ss_pred HcCCcceecCChHHHHHHHHHHH
Confidence 58999999976244444444443
No 179
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=90.41 E-value=0.17 Score=49.70 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=34.7
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCC
Q 000086 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGS 771 (2304)
Q Consensus 726 ~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~ 771 (2304)
.|.||.+|+|..+ +++|+.|++||+|+.|+..... ..-..|+.|.
T Consensus 7 ~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~-~~i~Ap~~G~ 52 (84)
T 2kcc_A 7 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMI-MTLNVQERGR 52 (84)
T ss_dssp EECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCE-EEEECSSSEE
T ss_pred eEECCCCEEEEEEECCCCCEECCCCEEEEEEeccee-EEEECCCCEE
Confidence 4999999999888 9999999999999999865432 1222355554
No 180
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=90.38 E-value=0.25 Score=46.53 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=35.8
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2304)
..|.||.+|+|..+ +++|+.|++||+|++++..+.. ..-..|+.|..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~-~~i~ap~~G~v 53 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKME-NEIPSPRDGVV 53 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEE-EEEECSSSEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccce-EEEeCCCCEEE
Confidence 46899999999888 9999999999999999875432 11223555544
No 181
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=90.37 E-value=8.6 Score=45.33 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=66.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh----------hhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++.+......++++.+.+ ..+-+|+|.-. +.|+.|.+- ......+.+..++..+..+.+|+|+.|-
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (261)
T 3pea_A 27 NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIH 106 (261)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58889999999999998876 46777777544 447776541 1112223345578889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ .+|.+++++|.
T Consensus 107 -G~a~GgG~~lalac----D~--ria~~~a~f~~ 133 (261)
T 3pea_A 107 -GAALGGGLEFAMSC----HM--RFATESAKLGL 133 (261)
T ss_dssp -SEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred -CeeehHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 34444455555553 77 88888888775
No 182
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=90.33 E-value=0.19 Score=48.47 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=31.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++.+++|+.|..|++|+.|+.
T Consensus 41 ~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3579999999999999999999999999999874
No 183
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=90.16 E-value=9.3 Score=45.07 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=65.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchh---------------hhhhhHHHHHHHHHHHHHcCCCCE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR---------------DLFEGILQAGSTIVENLRTYKQPV 2041 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~---------------~e~~gilk~ga~iv~al~~~~vP~ 2041 (2304)
..++++......++++.+.. .++-+|+|.-..+ |+.|.. .......+....++..+..+.+|+
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (263)
T 3l3s_A 28 HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPT 107 (263)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 58899999999999999876 4677887755432 554432 111223445667888999999999
Q ss_pred EEEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2042 FVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2042 i~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+.|- |-+.| |..+++. .|+ ++|.++++++.
T Consensus 108 IAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 139 (263)
T 3l3s_A 108 IALVE--GIATAAGLQLMAA----CDL--AYASPAARFCL 139 (263)
T ss_dssp EEEES--SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred EEEEC--CEEEHHHHHHHHH----CCE--EEecCCCEEeC
Confidence 99998 54555 5555554 366 78888888776
No 184
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=90.06 E-value=0.27 Score=46.84 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=36.4
Q ss_pred ceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000086 724 CMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2304)
Q Consensus 724 ~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2304)
...|.||.+|+|.++ +++|+.|.+||+|++|+..+.. ..-..|+.|..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~-~~i~Ap~~G~v 56 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKME-TEINAPTDGKV 56 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEE-EEEECSSSEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcccee-EEEECCCCEEE
Confidence 457899999999888 9999999999999999875421 12234555543
No 185
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=89.83 E-value=0.27 Score=57.96 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=56.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec--------ChHHHHHhhcccccccccccCccee----ecccCc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT--------GFSALNKLLGREVYSSHMQLGGPKI----MATNGV 1846 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt--------G~~al~~~lG~~vy~s~~~lGG~~i----~~~nGv 1846 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+.|-.+ ...-|+
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~pg~~~l~~~vG~~~A~-~l~ltg~~~~a~eA~~~GL 176 (254)
T 3isa_A 98 PSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQAL-SILGSARAFDADEARRIGF 176 (254)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCSHHHHHHHHCHHHHH-HHHTTTCEEEHHHHHHTTS
T ss_pred CCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccHHHHHHHHHcCHHHHH-HHHHhCCCCcHHHHHHCCC
Confidence 3699999999999999999999999999999876543 333444455543200 011222222 236999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000086 1847 VHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1847 ~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
+|.+++++ +..+.+.++..
T Consensus 177 v~~vv~~~-~l~~~a~~~a~ 195 (254)
T 3isa_A 177 VRDCAAQA-QWPALIDAAAE 195 (254)
T ss_dssp SSEECCGG-GHHHHHHHHHH
T ss_pred ccEEeChh-HHHHHHHHHHH
Confidence 99999754 44444444443
No 186
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=89.64 E-value=0.19 Score=48.50 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=31.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 3679999999999999999999999999999863
No 187
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=89.64 E-value=13 Score=43.48 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=68.5
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh--------hhhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD--------LFEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~--------e~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
-..++++-.....++++.+++ ..+=+|+|.-. +.|+.|..- ......+....++.++..+.+|+|+.|-
T Consensus 21 ~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 99 (254)
T 3hrx_A 21 LNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVN- 99 (254)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 358899999999999998876 56777776544 337766431 1123345667788999999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
|...+||.-+++. +|+ .+|.++|+++.-
T Consensus 100 G~a~GgG~~lala----cD~--ria~~~a~f~~p 127 (254)
T 3hrx_A 100 GVAAGAGMSLALW----GDL--RLAAVGASFTTA 127 (254)
T ss_dssp SEEETHHHHHHTT----CSE--EEEETTCEEECC
T ss_pred CEeeehhhhhhhc----cce--eeEcCCCEEEch
Confidence 3444445555554 477 888888888763
No 188
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=89.54 E-value=0.33 Score=57.74 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC----------hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG----------FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG----------~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+.+.+.+.+ ...-
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~A~~llltg~~i~A~e-A~~~ 177 (268)
T 3i47_A 99 PKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATR-AYSL 177 (268)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEHHH-HHHT
T ss_pred CCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHHc
Confidence 36999999999999999999999999999998765431 112333333321 00111111111 2468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.++++ .+..+.++++..
T Consensus 178 GLV~~vv~~-~~l~~~a~~~a~ 198 (268)
T 3i47_A 178 NLVQHCVPD-DTLLEFTLKYAS 198 (268)
T ss_dssp TSCSEEECG-GGHHHHHHHHHH
T ss_pred CCCcEeeCh-hHHHHHHHHHHH
Confidence 999999975 444455555543
No 189
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=89.47 E-value=0.17 Score=49.70 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=33.2
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
.....|+||..|+|.++.+++|+.|..|++|+.|+..
T Consensus 37 k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 37 KASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred ccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 3346799999999999999999999999999999854
No 190
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=89.33 E-value=12 Score=44.82 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh----------------hhhHHHHHHHHHHHHHcCCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL----------------FEGILQAGSTIVENLRTYKQ 2039 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e----------------~~gilk~ga~iv~al~~~~v 2039 (2304)
...++.+......++++.+.. ..+-+|+|.-. +.|+.|.+-. .....+....++..+..+.+
T Consensus 45 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 124 (290)
T 3sll_A 45 MNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQ 124 (290)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 358899999999999999876 46777777554 4477775411 11234456678888999999
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|+|+.|- |...+||..+++. .|+ .+|.++++++.-+
T Consensus 125 PvIAav~-G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 160 (290)
T 3sll_A 125 PVIAAIN-GAAIGGGLCLALA----CDV--RVASQDAYFRAAG 160 (290)
T ss_dssp CEEEEEC-SEEETHHHHHHHH----SSE--EEEETTCEEECTT
T ss_pred CEEEEEC-CeehHHHHHHHHH----CCE--EEEeCCCEEECch
Confidence 9999998 3444445555555 477 8888888887633
No 191
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=89.20 E-value=1.7 Score=57.27 Aligned_cols=87 Identities=7% Similarity=0.039 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhcc-C-CCEEEEecCCC-CCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcc
Q 000086 1984 DSATKTAQALMDFNRE-E-LPLFILANWRG-FSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD 2060 (2304)
Q Consensus 1984 ~sa~K~a~~i~~~~~~-~-lPLv~l~d~~G-f~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~ 2060 (2304)
.++..+.+.++.+... + --|++-.|++| -+... .......+..+...++|+++|+- .-+-||.|+++.
T Consensus 70 ~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~-------~~~I~~~i~~~k~~gkpvva~~~--~aas~~y~lAsa 140 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPS-------MQYIGKALKEFRDSGKPVYAVGE--NYSQGQYYLASF 140 (593)
T ss_dssp EEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHH-------HHHHHHHHHHHHHTTCCEEEEES--CEEHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHH-------HHHHHHHHHHHHhcCCeEEEEEc--cchhHHHHHHHh
Confidence 4678888888887553 3 46888899997 33211 12334555566666799999875 434456666654
Q ss_pred cccCCccceeecccCcEEEeeCccc
Q 000086 2061 SRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2061 ~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
+|. +|+.|++.+++.+|-+
T Consensus 141 ----ad~--i~~~P~~~vg~~g~~~ 159 (593)
T 3bf0_A 141 ----ANK--IWLSPQGVVDLHGFAT 159 (593)
T ss_dssp ----SSE--EEECTTCCEECCCCBC
T ss_pred ----CCE--EEECCCceEEEecccc
Confidence 365 8999999999999964
No 192
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=89.18 E-value=14 Score=43.29 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=67.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh--------hhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL--------FEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e--------~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-. ....++....++.++..+.+|+|+.|- |
T Consensus 22 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G 100 (254)
T 3gow_A 22 NAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVN-G 100 (254)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC-S
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCCChHHHhhcchhHHHHHHHHHHHHHHHHhCCCCEEEEEC-C
Confidence 58899999999999998876 45777777554 4487775321 112233456788899999999999998 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
...+||..+++. .|+ .+|.++++++.-
T Consensus 101 ~a~GgG~~lala----cD~--~ia~~~a~f~~p 127 (254)
T 3gow_A 101 VAAGAGMSLALW----GDL--RLAAVGASFTTA 127 (254)
T ss_dssp EEETHHHHHHTT----CSE--EEEETTCEEECC
T ss_pred eeehHHHHHHHH----CCE--EEEcCCCEEeCc
Confidence 444445555555 477 888888888753
No 193
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=89.05 E-value=9.7 Score=45.00 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=69.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh---------hhhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
...++++......++++.+.. ..+=+|+|.-.. .|+.|.+- ......+....++..+..+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 109 (265)
T 3kqf_A 30 ANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAI 109 (265)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 358999999999999998876 467777776543 37777531 112234456677888999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
- |...+||..+++.+ |+ .+|.+++++|.-
T Consensus 110 ~-G~a~GgG~~lalac----D~--ria~~~a~f~~p 138 (265)
T 3kqf_A 110 N-GIALGGGTELSLAC----DF--RIAAESASLGLT 138 (265)
T ss_dssp C-SEEETHHHHHHHHS----SE--EEEETTCEEECC
T ss_pred C-CeeehHHHHHHHhC----CE--EEEcCCcEEECc
Confidence 8 34444566556654 77 888888888753
No 194
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=88.93 E-value=20 Score=42.60 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=66.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEec-CCCCCCchhh-h------------hhhHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILAN-WRGFSGGQRD-L------------FEGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d-~~Gf~~G~~~-e------------~~gilk~ga~iv~al~~~~vP~i 2042 (2304)
..+++++-.....++++.+++ ..+-+|+|.- -+.|+.|.+- + .....+....++..+..+.+|+|
T Consensus 36 ~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 115 (274)
T 4fzw_C 36 LNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVI 115 (274)
T ss_dssp TSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 358899999999999999877 5677777754 3457777421 0 11223345567888999999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||.-+++. .|+ .+|.++++++.
T Consensus 116 Aav~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 146 (274)
T 4fzw_C 116 CAVN-GVAAGAGATLALG----GDI--VIAARSAKFVM 146 (274)
T ss_dssp EEEC-SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred EEEC-CceeecCceeeec----cce--EEECCCCEEEC
Confidence 9998 3444445555554 477 88888998876
No 195
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=88.85 E-value=0.23 Score=49.69 Aligned_cols=34 Identities=6% Similarity=0.090 Sum_probs=31.6
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 47 ~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 47 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred EEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4679999999999999999999999999999974
No 196
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=88.83 E-value=15 Score=43.64 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=66.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h------------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~------------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
...++++......++++.+.. ..+-+|+|.-. +.|+.|.+-. . ....+....++..+..+.+|+|
T Consensus 38 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 117 (279)
T 3g64_A 38 LNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVI 117 (279)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 358899999999999998876 46777777544 4487775311 0 0122334667888999999999
Q ss_pred EEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |-+.| |..+++. .|+ ++|.++++++.
T Consensus 118 Aav~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 148 (279)
T 3g64_A 118 AALH--GVAAGAGAVLALA----ADF--RVADPSTRFAF 148 (279)
T ss_dssp EEEC--SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred EEEc--CeeccccHHHHHh----CCE--EEEeCCCEEeC
Confidence 9998 54555 5555555 377 88888888775
No 197
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=88.81 E-value=5.6 Score=46.52 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=68.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEec-C-CCCCCchhhh-h---------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILAN-W-RGFSGGQRDL-F---------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d-~-~Gf~~G~~~e-~---------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++++-.....++++.+.+ ..+-+|+|.- . +.|+.|.+-. . ....+....++..+..+.+|+|+.|
T Consensus 22 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 101 (250)
T 2a7k_A 22 NPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAV 101 (250)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 58889999999999999876 4678888865 3 3477775321 0 1122334567888999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
- |...+||..+++. .|+ .+|.+++++|.-
T Consensus 102 ~-G~a~GgG~~lala----cD~--ria~~~a~f~~p 130 (250)
T 2a7k_A 102 D-GYAIGMGFQFALM----FDQ--RLMASTANFVMP 130 (250)
T ss_dssp C-SEEETHHHHHHTT----SSE--EEEETTCEEECC
T ss_pred C-CeEeHHHHHHHHh----CCE--EEEcCCCEEeCc
Confidence 8 3444455555655 477 888999998873
No 198
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=88.74 E-value=0.31 Score=57.42 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=55.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|... .-+.+.+.+.+ ...
T Consensus 91 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~e-A~~ 169 (254)
T 3hrx_A 91 EKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEE-ALA 169 (254)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHH-HHH
Confidence 3699999999999999999999999999999875443 2234445555422 11111222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 170 ~GLv~~vv~~~-~l~~~a~~~a 190 (254)
T 3hrx_A 170 LGLVHRVVPAE-KLMEEALSLA 190 (254)
T ss_dssp HTSCSEEECGG-GHHHHHHHHH
T ss_pred CCCeEEecCcH-HHHHHHHHHH
Confidence 99999999754 3444444443
No 199
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=88.70 E-value=0.34 Score=50.09 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.6
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|.|+.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 57899999999999 9999999999999999765
No 200
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=88.64 E-value=6.1 Score=47.30 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=67.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh----------hhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|.+- ......+....++..+..+.+|+|+.|-
T Consensus 48 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 127 (286)
T 3myb_A 48 NALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVH 127 (286)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 58899999999999999876 46777777543 458877531 1122334556788889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ .+|.++++++.
T Consensus 128 -G~a~GgG~~lalac----D~--ria~~~a~f~~ 154 (286)
T 3myb_A 128 -GIATAAGCQLVAMC----DL--AVATRDARFAV 154 (286)
T ss_dssp -SCEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred -CeehHHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 34444555555554 66 88888888775
No 201
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=88.62 E-value=0.27 Score=53.74 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=33.5
Q ss_pred EEccCCCEEccCCcEEEEEccccc-------eeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMC-------MPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~-------~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
.+|++||+|++||+|+++.--+.. +++.-.- .....+ ...+..|.+|+.|..+
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NGGKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp ECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CSSCCCSCBCCEEECTTCEEEEE
T ss_pred EEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CCcceEEEccCceEcCCCEEEEe
Confidence 699999999999999999742222 2221111 111222 3346678889988876
No 202
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A
Probab=88.59 E-value=3.7 Score=48.75 Aligned_cols=95 Identities=21% Similarity=0.183 Sum_probs=67.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-----------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-.. ....+....++.++..+.+|+|+.|
T Consensus 35 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (272)
T 3qk8_A 35 NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAI 114 (272)
T ss_dssp HEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47888999999999998876 46777777554 44887753211 1223345567888999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |...+||..+++. +|+ .+|.++|+++.
T Consensus 115 ~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 142 (272)
T 3qk8_A 115 R-GPAVGAGLVVALL----ADI--SVASATAKIID 142 (272)
T ss_dssp C-SEEEHHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred C-CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 8 3444445555555 477 88999998876
No 203
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=88.43 E-value=0.37 Score=56.98 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=55.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 179 (261)
T 2gtr_A 101 KKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQE-ACG 179 (261)
T ss_dssp CSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999875542 1223444455321 01111222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 180 ~GLv~~vv~~~-~l~~~a~~~a 200 (261)
T 2gtr_A 180 KGLVSQVFWPG-TFTQEVMVRI 200 (261)
T ss_dssp TTSCSEEECGG-GHHHHHHHHH
T ss_pred CCCcccccChh-HHHHHHHHHH
Confidence 99999999754 3444444443
No 204
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=88.36 E-value=0.46 Score=57.06 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=52.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-------Ch---HHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-------GF---SALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-------G~---~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. +. ..|-+.+|... .-+...+.+.+ ...-
T Consensus 119 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~~ 197 (286)
T 3myb_A 119 PAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALSRNVGRKAAFEMLVTGEFVSADD-AKGL 197 (286)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCHHHHHHHTTTSCHHHHHHHHHHCCCEEHHH-HHHH
T ss_pred CCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCCCchHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HHHC
Confidence 3699999999999999999999999999999765432 11 11222223211 00111111111 3468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.++++ .+..+.+++|.
T Consensus 198 GLv~~vv~~-~~l~~~a~~~a 217 (286)
T 3myb_A 198 GLVNRVVAP-KALDDEIEAMV 217 (286)
T ss_dssp TSCSEEECG-GGHHHHHHHHH
T ss_pred CCCcEecCH-HHHHHHHHHHH
Confidence 999999974 44444444443
No 205
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=88.26 E-value=0.34 Score=57.86 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=51.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEe-cCcceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~-~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-+-+.+|... .-+...+.+.+ ..
T Consensus 112 ~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~e-A~ 190 (280)
T 1pjh_A 112 SKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI-MC 190 (280)
T ss_dssp CSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHH-HH
T ss_pred CCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HH
Confidence 36999999999999999999999999999 88765542 2233444555322 11111222222 34
Q ss_pred ccCceEEEecCc
Q 000086 1843 TNGVVHLTVSDD 1854 (2304)
Q Consensus 1843 ~nGv~d~~v~dd 1854 (2304)
..|++|.+++++
T Consensus 191 ~~GLv~~vv~~~ 202 (280)
T 1pjh_A 191 ENGFISKNFNMP 202 (280)
T ss_dssp HTTCCSEECCCC
T ss_pred HCCCcceeeCCc
Confidence 699999999876
No 206
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=88.19 E-value=10 Score=44.83 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhh----hhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRD----LFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR 2052 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~----e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~ 2052 (2304)
...++++......++++.+....+-+|+|.-. +.|+.|.+- ......+....++..+..+.+|+|+.|- |...+
T Consensus 42 ~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G~a~G 120 (264)
T 3he2_A 42 RNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAIN-GPAIG 120 (264)
T ss_dssp TTCBCHHHHHHHHHHHHCC---CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEEC-SCEET
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC-CcEEc
Confidence 35889999999999999887667777777543 347776432 1223445566788899999999999998 34444
Q ss_pred chhhhhcccccCCccceeecccCcEEEe
Q 000086 2053 GGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2053 GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
||..+++. .|+ ++|.++++++.
T Consensus 121 gG~~lala----cD~--ria~~~a~f~~ 142 (264)
T 3he2_A 121 AGLQLAMQ----CDL--RVVAPDAFFQF 142 (264)
T ss_dssp HHHHHHHH----SSE--EEECTTCEEEC
T ss_pred chhHHHHh----CCE--EEEcCCCEEEC
Confidence 45555555 477 88999998876
No 207
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=87.94 E-value=0.39 Score=56.92 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=54.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~e-A~~ 180 (265)
T 3swx_A 102 SKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVE-AHR 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHH-HHH
T ss_pred CCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHH-HHH
Confidence 46999999999999999999999999999998765432 222444555322 11111222222 236
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~ 200 (265)
T 3swx_A 181 IGIVQEIVPVG-EHVDTAIAI 200 (265)
T ss_dssp TTSCSEEESTT-CHHHHHHHH
T ss_pred cCCCCEecChh-HHHHHHHHH
Confidence 89999999764 334444444
No 208
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=87.93 E-value=0.26 Score=48.55 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCeeeeCCCceeEEEEccCCC-EEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd-~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++++++|+ .|..||+|+.|+.
T Consensus 48 ~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred cceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 467999999999999999999 8999999999984
No 209
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=87.84 E-value=0.26 Score=58.85 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=57.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~e-A~~ 184 (275)
T 3hin_A 106 RVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAE-GVV 184 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876553 2233444455321 11112222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.+++++ +..+.+++|..-+
T Consensus 185 ~GLv~~vv~~~-~l~~~a~~~a~~i 208 (275)
T 3hin_A 185 HGFSQYLIENG-SAYDKALELGNRV 208 (275)
T ss_dssp HTSCSEEESSS-CHHHHHHHHHHHH
T ss_pred CCCCCEEeChh-HHHHHHHHHHHHH
Confidence 89999999754 4455555554433
No 210
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}
Probab=87.83 E-value=42 Score=41.30 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=68.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC--CCCCCchhh--hh----------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW--RGFSGGQRD--LF----------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~--~Gf~~G~~~--e~----------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
-.+++++-.....++++.++. ..+-+|+|.-. +.|+.|..- +. .........++..+..+..|+|
T Consensus 30 ~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 109 (353)
T 4hdt_A 30 INSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYV 109 (353)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 358899999999999998877 67888888754 358888541 11 1122344567888999999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||..+++. .|+ .+|.++|+++.
T Consensus 110 Aav~-G~a~GgG~~lal~----cD~--ria~~~a~f~~ 140 (353)
T 4hdt_A 110 SIMD-GIVMGGGVGVGAH----GNV--RVVTDTTKMAM 140 (353)
T ss_dssp EEEC-BEEETHHHHHHTT----SSE--EEECTTCEEEC
T ss_pred EEeE-CceeecCccccCC----cCe--eccchhccccC
Confidence 9998 3444445555555 466 78888888876
No 211
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}
Probab=87.74 E-value=0.4 Score=56.79 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCc-ceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQ-PIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~-~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++ .+.+. |..-+-+.+|... .-+...+.+.+ ..
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~ 179 (265)
T 2ppy_A 101 PQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQE-AL 179 (265)
T ss_dssp SSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHH-HH
T ss_pred CCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHH-HH
Confidence 36999999999999999999999999999999 65542 1222444445321 01112222222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
..|++|.++++ .+..+.+++|..
T Consensus 180 ~~GLv~~vv~~-~~l~~~a~~~a~ 202 (265)
T 2ppy_A 180 EIGLVNRVFPQ-AETRERTREYAR 202 (265)
T ss_dssp HHTSSSEEECG-GGHHHHHHHHHH
T ss_pred HCCCcceecCH-HHHHHHHHHHHH
Confidence 69999999975 344445555543
No 212
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=87.68 E-value=0.38 Score=57.44 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=56.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 109 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~e-A~~ 187 (275)
T 4eml_A 109 PKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQE-AER 187 (275)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999876653 2233444444321 00111222222 236
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+.+++|..
T Consensus 188 ~GLv~~vv~~~-~l~~~a~~~a~ 209 (275)
T 4eml_A 188 MGMVNTVVPVD-RLEEEGIQWAK 209 (275)
T ss_dssp HTSCSEEECGG-GHHHHHHHHHH
T ss_pred cCCccEeeCHH-HHHHHHHHHHH
Confidence 89999999754 44555555543
No 213
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=87.54 E-value=0.34 Score=57.51 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=56.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~e-A~~ 180 (265)
T 3kqf_A 102 PQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQE-AKE 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876543 2233444444321 00111222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+.+++|..-
T Consensus 181 ~GLv~~vv~~-~~l~~~a~~~a~~ 203 (265)
T 3kqf_A 181 YGLVEFVVPV-HLLEEKAIEIAEK 203 (265)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHHH
T ss_pred CCCccEEeCH-HHHHHHHHHHHHH
Confidence 8999999974 4555555555443
No 214
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=87.51 E-value=3.5 Score=48.45 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhhh---------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDLF---------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e~---------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
...++++-.....++++.++...+-+|+|.-. +.|+.|.+-.. .........++..+..+.+|+|+.|-
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 106 (254)
T 3isa_A 28 RNALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAH- 106 (254)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 35889999999999999887767778888654 34777743110 11122345678889999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++. .|+ .+|.++++++.
T Consensus 107 G~a~GgG~~lala----cD~--ria~~~a~f~~ 133 (254)
T 3isa_A 107 GRNFGAGVDLFAA----CKW--RYCTPEAGFRM 133 (254)
T ss_dssp SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred CeEeecchhHHHh----CCE--EEEcCCCEEEC
Confidence 3344445555555 477 88888888876
No 215
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=87.49 E-value=0.41 Score=56.76 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh-----------HHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF-----------SALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~-----------~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+... .-+-+.+|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 180 (265)
T 3qxi_A 102 AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAER-AHA 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 579999999999999999999999999999987554321 22333333321 00111111111 236
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+++|.
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~a 201 (265)
T 3qxi_A 181 LGMVNVLAEPG-AALDAAIALA 201 (265)
T ss_dssp TTSCSEEECTT-CHHHHHHHHH
T ss_pred CCCccEeeChh-HHHHHHHHHH
Confidence 89999999754 4444444443
No 216
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=87.46 E-value=0.51 Score=56.41 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=56.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccccccccccCccee----ecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy~s~~~lGG~~i----~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+-|-.+ ...
T Consensus 121 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~-~l~ltg~~~~A~eA~~ 199 (280)
T 2f6q_A 121 PKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT-EMLIFGKKLTAGEACA 199 (280)
T ss_dssp CSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH-HHHTTCCCEEHHHHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHH-HHHHcCCCCCHHHHHH
Confidence 3699999999999999999999999999999875543 122344455542200 011122222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.+++++ +..+.+++|..-
T Consensus 200 ~GLv~~vv~~~-~l~~~a~~~a~~ 222 (280)
T 2f6q_A 200 QGLVTEVFPDS-TFQKEVWTRLKA 222 (280)
T ss_dssp TTSCSEEECTT-THHHHHHHHHHH
T ss_pred CCCcceEECHH-HHHHHHHHHHHH
Confidence 99999999754 444555555443
No 217
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=87.36 E-value=0.081 Score=53.05 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
...|+||..|+|.++.+++|+.|..|++|+.||
T Consensus 62 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 62 QNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------------------------------
T ss_pred cEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 467999999999999999999999999999886
No 218
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=87.26 E-value=0.68 Score=55.18 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=57.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccccc----ccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy----~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|.... -+...+.+.+ ...
T Consensus 111 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~e-A~~ 189 (274)
T 4fzw_C 111 PKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQ-AHE 189 (274)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHH-HHH
Confidence 3699999999999999999999999999999875542 22334555554320 0111121111 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+++|..-+
T Consensus 190 ~GLv~~vv~~-~~l~~~a~~~a~~l 213 (274)
T 4fzw_C 190 WGMIWQVVDD-ETLADTAQQLARHL 213 (274)
T ss_dssp TTSSSEEECG-GGHHHHHHHHHHHH
T ss_pred CCCceEEeCh-HHHHHHHHHHHHHH
Confidence 9999999974 44555555554433
No 219
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=87.17 E-value=0.41 Score=58.72 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH--------HHHHhhcccccccccccCccee----ecccCc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS--------ALNKLLGREVYSSHMQLGGPKI----MATNGV 1846 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~--------al~~~lG~~vy~s~~~lGG~~i----~~~nGv 1846 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.-.+ .+-+.+|..... ..=|-|-.+ ...-|+
T Consensus 157 ~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g~l~~~vG~~~A~-ellltG~~i~A~eA~~~GL 235 (333)
T 3njd_A 157 DKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLGDQRAK-RLLFTGDCITGAQAAEWGL 235 (333)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTCCHHHHHCHHHHH-HHHTTCCEEEHHHHHHTTS
T ss_pred CCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHCCC
Confidence 4799999999999999999999999999999876654322 122223321100 001112222 246899
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000086 1847 VHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1847 ~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
++.++++ .+..+.+++|..
T Consensus 236 V~~vv~~-~~l~~~a~~lA~ 254 (333)
T 3njd_A 236 AVEAPDP-ADLDARTERLVE 254 (333)
T ss_dssp SSBCCCG-GGHHHHHHHHHH
T ss_pred ccEecCh-HHHHHHHHHHHH
Confidence 9999965 444455555543
No 220
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=87.11 E-value=0.6 Score=55.00 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=55.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ...+-+.+|... .-+...+.+.+ ...
T Consensus 91 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~e-A~~ 169 (254)
T 3gow_A 91 EKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEE-ALA 169 (254)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 36999999999999999999999999999998755432 223444444321 00111112211 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.+++|..
T Consensus 170 ~Glv~~vv~~-~~l~~~a~~~a~ 191 (254)
T 3gow_A 170 LGLVHRVVPA-EKLMEEALSLAK 191 (254)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHH
T ss_pred cCCCCEecCH-HHHHHHHHHHHH
Confidence 8999999975 444455555443
No 221
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=87.08 E-value=20 Score=42.91 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=66.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh----------hhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|.+- ......+....++..+..+.+|+|+.|-
T Consensus 55 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 134 (287)
T 2vx2_A 55 NTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVN 134 (287)
T ss_dssp TCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58899999999999998876 46777777654 235555421 1112233456678889999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|-+.| |..+++. +|+ .+|.++++++.-+
T Consensus 135 --G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 163 (287)
T 2vx2_A 135 --GLATAAGCQLVAS----CDI--AVASDKSSFATPG 163 (287)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTCEEECCG
T ss_pred --CEEEcHHHHHHHh----CCE--EEEcCCCEEECch
Confidence 54455 5555554 477 8888999887633
No 222
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=87.03 E-value=0.47 Score=56.18 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------cC---hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------TG---FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------tG---~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ .+ ..-+-+.+|... .-+...+.+.+ ...-
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~e-A~~~ 182 (263)
T 3l3s_A 104 PKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDADW-ALAA 182 (263)
T ss_dssp SSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCCHHHHHHHHTTSCHHHHHHHHHHCCEEEHHH-HHHH
T ss_pred CCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HHHC
Confidence 469999999999999999999999999999976543 31 122333334321 00111111111 2468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.++++ .+..+.+++|..
T Consensus 183 GLv~~vv~~-~~l~~~a~~~a~ 203 (263)
T 3l3s_A 183 GLINRILPE-AALATHVADLAG 203 (263)
T ss_dssp TSSSEECCH-HHHHHHHHHHHH
T ss_pred CCccEEeCH-HHHHHHHHHHHH
Confidence 999999964 445555555543
No 223
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=86.84 E-value=0.69 Score=54.55 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=55.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 93 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 171 (256)
T 3trr_A 93 RKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAED-AAK 171 (256)
T ss_dssp SSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHH-HGG
T ss_pred CCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 46999999999999999999999999999997654321 223444444322 00111122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+.+++|..
T Consensus 172 ~GLv~~vv~~~-~l~~~a~~~a~ 193 (256)
T 3trr_A 172 YGFINRLVDDG-QALDTALELAA 193 (256)
T ss_dssp GTCCSEEECTT-CHHHHHHHHHH
T ss_pred CCCeeEecChH-HHHHHHHHHHH
Confidence 89999999754 34444444443
No 224
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A
Probab=86.84 E-value=0.6 Score=56.52 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=55.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh-----------HHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF-----------SALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~-----------~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-|-+.+|... .-+...+.+.+ ...
T Consensus 140 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 218 (305)
T 3m6n_A 140 RAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQ-LLG 218 (305)
T ss_dssp TCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHH-HHH
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHH-HHH
Confidence 469999999999999999999999999999987554321 12222233211 00011111111 235
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+.+|..-+
T Consensus 219 ~GLv~~vv~~-~~l~~~a~~~a~~l 242 (305)
T 3m6n_A 219 MGLVDRVVPR-GQGVAAVEQVIRES 242 (305)
T ss_dssp HTSCSEEECT-TCHHHHHHHHHHHH
T ss_pred CCCCCEecCh-hHHHHHHHHHHHHH
Confidence 7999999975 44555555555444
No 225
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}
Probab=86.71 E-value=5.2 Score=46.34 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhh--------hhhhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD--------LFEGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~--------e~~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
..++++......++++.+... .-+|+|.-.+ .|+.|.+- ......+....++.++..+.+|+|+.|- |
T Consensus 27 Nal~~~~~~~L~~al~~~~~d-~~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 103 (232)
T 3ot6_A 27 NAISPDVIIAFNAALDQAEKD-RAIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACP--G 103 (232)
T ss_dssp TCBCHHHHHHHHHHHHHHHHT-TCEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECC--E
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CCEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEEC--C
Confidence 578899999999999888764 3466664432 37766431 1122344556788899999999999988 4
Q ss_pred cCCc-hhhhhcccccCCccceeecccC-cEEEe
Q 000086 2050 ELRG-GAWVVVDSRINSDHIEMYADRT-AKGNV 2080 (2304)
Q Consensus 2050 e~~G-Ga~vv~~~~i~~d~~~~~A~p~-A~~gv 2080 (2304)
-+.| |.-+++. .|+ .+|.++ ++++.
T Consensus 104 ~a~GgG~~lala----cD~--ria~~~~a~f~~ 130 (232)
T 3ot6_A 104 HAVAKGAFLLLS----ADY--RIGVAGPFSIGL 130 (232)
T ss_dssp EEETHHHHHHTT----SSE--EEEECSSCCEEC
T ss_pred EeehHHHHHHHH----CCE--EEEeCCCcEEEC
Confidence 4445 5555554 466 788886 67775
No 226
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=86.71 E-value=7 Score=46.25 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=66.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-h---------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L---------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e---------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|.+- + .....+....++.++..+.+|+|+.|-
T Consensus 46 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 125 (263)
T 2j5g_A 46 LVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVN 125 (263)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 36788888999999988876 467777776432 36655431 1 112233345778889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.||..+++.+ |+ .+|.++++++.
T Consensus 126 --G~a~GG~~Lalac----D~--ria~~~a~f~~ 151 (263)
T 2j5g_A 126 --GAALLHSEYILTT----DI--ILASENTVFQD 151 (263)
T ss_dssp --SEECSCGGGGGGC----SE--EEEETTCEECC
T ss_pred --CcchHHHHHHHhC----CE--EEEcCCCEEec
Confidence 5555776666654 77 88999998876
No 227
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=86.70 E-value=10 Score=45.26 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=65.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h------------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F------------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~------------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
...++++......++++.+.+ ..+ +|+|.-.+ .|+.|.+-. . ....+....++.++..+.+|+|
T Consensus 47 ~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 125 (280)
T 2f6q_A 47 KNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLI 125 (280)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 358889999999999998876 567 87776542 366664311 0 0012234567788999999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
+.|- |...+||..+++. .|+ .+|.++|+++.-+
T Consensus 126 Aav~-G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 158 (280)
T 2f6q_A 126 AVVN-GPAVGISVTLLGL----FDA--VYASDRATFHTPF 158 (280)
T ss_dssp EEEC-SCEETHHHHGGGG----CSE--EEEETTCEEECCT
T ss_pred EEEC-CeeehHHHHHHHh----CCE--EEECCCcEEECch
Confidence 9998 3444455555555 477 8888888887743
No 228
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=86.68 E-value=0.39 Score=57.46 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=56.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~~ 193 (278)
T 3h81_A 115 RTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAE-AER 193 (278)
T ss_dssp CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 3699999999999999999999999999999875532 2233444444321 11112222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+.+++|..-
T Consensus 194 ~GLv~~vv~~-~~l~~~a~~~a~~ 216 (278)
T 3h81_A 194 SGLVSRVVPA-DDLLTEARATATT 216 (278)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHHH
T ss_pred CCCccEEeCh-hHHHHHHHHHHHH
Confidence 8999999975 4455555555443
No 229
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=86.68 E-value=0.71 Score=54.75 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~e-A~~ 176 (265)
T 3qxz_A 98 RTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQR-AVE 176 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHH-HHH
T ss_pred CCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999998765431 112333333221 00111222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+++|.
T Consensus 177 ~GLv~~vv~~-~~l~~~a~~~a 197 (265)
T 3qxz_A 177 TGLANRCLPA-GKVLGAALRMA 197 (265)
T ss_dssp HTSCSEEECH-HHHHHHHHHHH
T ss_pred CCCccEeeCH-HHHHHHHHHHH
Confidence 8999999974 44444444443
No 230
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=86.55 E-value=0.73 Score=54.29 Aligned_cols=84 Identities=21% Similarity=0.156 Sum_probs=54.0
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+.. ..-+-+.+|... .-+...+.+.+ ...-
T Consensus 93 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~e-A~~~ 171 (255)
T 3p5m_A 93 KPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAAT-AFEW 171 (255)
T ss_dssp SCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHH-HHHT
T ss_pred CCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHHC
Confidence 6999999999999999999999999999998765521 122333333221 00111122222 3469
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++++ +..+.+++|.
T Consensus 172 GLv~~vv~~~-~l~~~a~~~a 191 (255)
T 3p5m_A 172 GMISHITSAD-EYESVLTDVL 191 (255)
T ss_dssp TSCSEECCTT-CHHHHHHHHH
T ss_pred CCCCEeeCHH-HHHHHHHHHH
Confidence 9999999754 4444444443
No 231
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=86.51 E-value=8.2 Score=45.74 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=66.9
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h-----------hhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-----------EGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~-----------~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
...++++......++++.+.. ..+-+|+|.-. +.|+.|.+-. . .........++..+..+.+|+|+
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 104 (268)
T 3i47_A 25 HNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIA 104 (268)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 358999999999999999876 46777777543 4588775311 1 01123455678889999999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||..+++.+ |+ ++|.++++++.
T Consensus 105 av~-G~a~GgG~~lalac----D~--ria~~~a~f~~ 134 (268)
T 3i47_A 105 MVQ-GAAFGGGAGLAAAC----DI--AIASTSARFCF 134 (268)
T ss_dssp EEC-SEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred EEC-CEEEhHhHHHHHhC----CE--EEEcCCCEEEC
Confidence 998 34444455555554 77 88888888775
No 232
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=86.43 E-value=0.61 Score=55.14 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=56.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~e-A~~ 176 (261)
T 3pea_A 98 SKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAE-ALK 176 (261)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999875542 1223444444321 00111111111 236
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+.+++|..-
T Consensus 177 ~GLv~~vv~~-~~l~~~a~~~a~~ 199 (261)
T 3pea_A 177 WGLVNGVFAE-ETFLDDTLKVAKQ 199 (261)
T ss_dssp HTSSSEEECG-GGHHHHHHHHHHH
T ss_pred CCCccEecCH-HHHHHHHHHHHHH
Confidence 8999999975 4455555555443
No 233
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=86.35 E-value=4.7 Score=47.41 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=66.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h---------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F---------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~---------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|..-. . .........++..+..+.+|+|+.|-
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 107 (256)
T 3qmj_A 28 NAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVN 107 (256)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58899999999999998876 46777777654 3377775411 1 11123346788899999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++. .|+ ++|.++++++.
T Consensus 108 -G~a~GgG~~lala----cD~--~ia~~~a~f~~ 134 (256)
T 3qmj_A 108 -GLGVGIGATILGY----ADL--AFMSSTARLKC 134 (256)
T ss_dssp -SEEETHHHHGGGG----CSE--EEEETTCEEEC
T ss_pred -CeehhHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 3344445555555 476 78888888776
No 234
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=86.21 E-value=27 Score=40.73 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=65.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h-h-------hHHH--H-HHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-E-------GILQ--A-GSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~-~-------gilk--~-ga~iv~al~~~~vP~i~~ 2044 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-. . . .... . ...++..+..+.+|+|+.
T Consensus 21 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 100 (253)
T 1uiy_A 21 NPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAA 100 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 58889999999999998876 46666766543 4577775311 0 0 0111 1 456678889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||..+++. .|+ .+|.+++++|.
T Consensus 101 v~-G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 129 (253)
T 1uiy_A 101 VN-GPAVAGGAGLALA----CDL--VVMDEEARLGY 129 (253)
T ss_dssp EC-SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred EC-CeeeHHHHHHHHh----CCE--EEEcCCcEEeC
Confidence 98 3445556666665 477 88999999887
No 235
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=86.14 E-value=0.73 Score=54.60 Aligned_cols=85 Identities=19% Similarity=0.146 Sum_probs=55.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~e-A~~ 178 (263)
T 3moy_A 100 RKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEE-AER 178 (263)
T ss_dssp CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHH-HHH
T ss_pred CCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876643 2233444444321 00111122222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+++|.
T Consensus 179 ~GLv~~vv~~-~~l~~~a~~~a 199 (263)
T 3moy_A 179 VGLVSRIVPA-ADLLDEALAVA 199 (263)
T ss_dssp TTSCSEEECG-GGHHHHHHHHH
T ss_pred CCCccEecCc-hHHHHHHHHHH
Confidence 9999999975 34445555543
No 236
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=86.06 E-value=0.39 Score=56.70 Aligned_cols=86 Identities=16% Similarity=0.039 Sum_probs=55.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 92 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~e-A~~ 170 (256)
T 3pe8_A 92 TKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQD-ALR 170 (256)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876543 1223344444321 00111112221 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.+.++..
T Consensus 171 ~GLv~~vv~~-~~l~~~a~~~a~ 192 (256)
T 3pe8_A 171 AGLVTEVVAH-DDLLTAARRVAA 192 (256)
T ss_dssp HTSCSCEECG-GGHHHHHHHHHH
T ss_pred CCCCeEEeCH-hHHHHHHHHHHH
Confidence 8999999975 444555555543
No 237
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=85.97 E-value=0.43 Score=57.05 Aligned_cols=87 Identities=15% Similarity=0.036 Sum_probs=53.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh---------HHHHHhhccc----ccccccccCcceeecccC
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF---------SALNKLLGRE----VYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~---------~al~~~lG~~----vy~s~~~lGG~~i~~~nG 1845 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. ..+-+.+|.. +.-+.+.+.+.+ ...-|
T Consensus 117 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~~~~~~~~~~vG~~~A~~llltG~~i~A~e-A~~~G 195 (279)
T 3t3w_A 117 PKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGGVEYHGHTWELGPRKAKEILFTGRAMTAEE-VAQTG 195 (279)
T ss_dssp SSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSCSSCCHHHHHCHHHHHHHHHHCCCEEHHH-HHHHT
T ss_pred CCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCCchHHHHHhhcCHHHHHHHHHcCCccCHHH-HHHCC
Confidence 469999999999999999999999999999976544210 0011122211 100111112222 34689
Q ss_pred ceEEEecCcHHHHHHHHHHHhc
Q 000086 1846 VVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
++|.++++ .+..+.+++|..-
T Consensus 196 Lv~~vv~~-~~l~~~a~~~a~~ 216 (279)
T 3t3w_A 196 MVNRVVPR-DRLDAETRALAGE 216 (279)
T ss_dssp SCSEEECG-GGHHHHHHHHHHH
T ss_pred CCcEeeCh-HHHHHHHHHHHHH
Confidence 99999964 4455555555443
No 238
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=85.88 E-value=6.5 Score=46.32 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=66.5
Q ss_pred ccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1980 VWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1980 ~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
.+.++......++++.+.+ .++-+|+|.-. +.|+.|.+-. .....+....++..+..+.+|+|+.|-
T Consensus 39 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 116 (257)
T 1szo_A 39 VWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVN-- 116 (257)
T ss_dssp EECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC--
Confidence 6788888999999998876 46777777654 3377664311 112233345678889999999999998
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.||..+++.+ |+ .+|.++++++.
T Consensus 117 G~a~GG~~Lalac----D~--ria~~~a~f~~ 142 (257)
T 1szo_A 117 GPVTNAPEIPVMS----DI--VLAAESATFQD 142 (257)
T ss_dssp SCBCSSTHHHHTS----SE--EEEETTCEEEC
T ss_pred CchHHHHHHHHHC----CE--EEEeCCCEEec
Confidence 5555777666654 77 88999998886
No 239
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}
Probab=85.83 E-value=27 Score=41.15 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=65.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEec-C-CCCCCchhh-hh-------hhHHHHH-HHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILAN-W-RGFSGGQRD-LF-------EGILQAG-STIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d-~-~Gf~~G~~~-e~-------~gilk~g-a~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.+ ..+-+|+|.- . +.|+.|.+- +. ....+.. ..++..+..+.+|+|+.|-
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 109 (265)
T 2ppy_A 30 NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLE 109 (265)
T ss_dssp CCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 57888999999999998876 5677777765 3 236666431 11 1122334 5678889999999999988
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCc-EEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTA-KGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A-~~gv 2080 (2304)
|...+||..+++. .|+ .+|.+++ ++|.
T Consensus 110 -G~a~GgG~~lala----cD~--ria~~~ag~f~~ 137 (265)
T 2ppy_A 110 -GHTVGGGLEMALA----CDL--RFMGDEAGKIGL 137 (265)
T ss_dssp -SEEETHHHHHHHT----SSE--EEEETTCCCEEC
T ss_pred -CEEeeHHHHHHHh----CCE--EEEeCCCCEEEC
Confidence 3344445555554 477 8899999 8886
No 240
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=85.66 E-value=0.77 Score=54.86 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=59.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 193 (277)
T 4di1_A 115 PKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEE-ALA 193 (277)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876542 1233444444321 00111222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+++|..-+
T Consensus 194 ~GLV~~vv~~-~~l~~~a~~~a~~l 217 (277)
T 4di1_A 194 LGLIDDMVAP-DDVYDSAVAWARRY 217 (277)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHHTT
T ss_pred CCCccEEeCh-hHHHHHHHHHHHHH
Confidence 8999999974 56777777777655
No 241
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}
Probab=85.64 E-value=0.47 Score=56.97 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=55.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEec-CcceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRL-DQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~-~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+ ++.+.+. |..-|-+.+|... .-+.+.+.+.+ ..
T Consensus 106 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~e-A~ 184 (287)
T 3gkb_A 106 PQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAET-AA 184 (287)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 369999999999999999999999999999 7765543 2233444445321 00111122222 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|++|.++++ .+..+.+.++..
T Consensus 185 ~~GLV~~vv~~-~~l~~~a~~lA~ 207 (287)
T 3gkb_A 185 SYGWINRALPA-DELDEYVDRVAR 207 (287)
T ss_dssp HHTSSSEEECH-HHHHHHHHHHHH
T ss_pred HCCCCcEEeCh-hHHHHHHHHHHH
Confidence 68999999975 445555555543
No 242
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=85.51 E-value=5.8 Score=46.86 Aligned_cols=96 Identities=21% Similarity=0.121 Sum_probs=66.7
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCC-CCchhh-hh------------hhHHHHHHHHHHHHHcCCCCE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGF-SGGQRD-LF------------EGILQAGSTIVENLRTYKQPV 2041 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf-~~G~~~-e~------------~gilk~ga~iv~al~~~~vP~ 2041 (2304)
...++++......++++.+.+ ..+-+|+|.-. +.| +.|..- +. ....+....++.++..+.+|+
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 104 (263)
T 3lke_A 25 KNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVT 104 (263)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 358899999999999998876 45667666543 447 666431 11 112334566788899999999
Q ss_pred EEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2042 FVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2042 i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+.|- |...+||..+++. .|+ .+|.+++++|.
T Consensus 105 IAav~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 136 (263)
T 3lke_A 105 VALIN-GYAYGGGFNMMLA----CDR--RIALRRAKFLE 136 (263)
T ss_dssp EEEEC-SEEETHHHHGGGG----SSE--EEEETTCEEEC
T ss_pred EEEEC-CEeeHHHHHHHHH----CCE--EEEcCCCEEeC
Confidence 99998 3444445555555 477 88999998875
No 243
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=85.38 E-value=0.23 Score=48.07 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=32.2
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
......|+||..|+|.++++++|+.|..|++|+.|+
T Consensus 42 ~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~ 77 (80)
T 1pmr_A 42 DKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp SSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred cceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 334578999999999999999999999999999876
No 244
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=85.23 E-value=0.58 Score=56.46 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.- ..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 130 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~e-A~~ 208 (298)
T 3qre_A 130 RKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE-AAQ 208 (298)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHH-HHH
T ss_pred CCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 36999999999999999999999999999998866632 223444444322 00111111111 236
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 209 ~GLV~~vv~~~-~l~~~a~~~ 228 (298)
T 3qre_A 209 LGLVKEVVTPE-QLMPRALEY 228 (298)
T ss_dssp TTSCSEEECGG-GHHHHHHHH
T ss_pred cCCCeEecCHH-HHHHHHHHH
Confidence 89999999754 344444443
No 245
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*
Probab=84.91 E-value=1 Score=57.17 Aligned_cols=89 Identities=21% Similarity=0.108 Sum_probs=58.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC----------hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG----------FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG----------~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.- ..-|-+.+|... .-+...+.+.+ ...-
T Consensus 284 pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g~~~L~rlvG~~~A~ellLtG~~i~A~E-A~~~ 362 (440)
T 2np9_A 284 EKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVSRQVILEGRRIWAKE-PEAR 362 (440)
T ss_dssp CCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCEETTS-GGGG
T ss_pred CCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHHC
Confidence 46999999999999999999999999999987654431 112222333211 01112222222 3568
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
|++|.++++ .+....+.++..-++
T Consensus 363 GLV~~Vvp~-~eL~~~a~~~A~~la 386 (440)
T 2np9_A 363 LLVDEVVEP-DELDAAIERSLTRLD 386 (440)
T ss_dssp GTCSEEECH-HHHHHHHHHHHHTTC
T ss_pred CCCcEecCh-HHHHHHHHHHHHHhC
Confidence 999999964 455666777766553
No 246
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=84.83 E-value=0.82 Score=56.07 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEe-cCcceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~-~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-|-+.+|... .-+.+.+.+ +=..
T Consensus 167 ~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A-~eA~ 245 (334)
T 3t8b_A 167 PKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTA-EQMH 245 (334)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEH-HHHH
T ss_pred CCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCH-HHHH
Confidence 46999999999999999999999999999 88776543 2333444444322 001111111 1134
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|+++.++++ .+..+.+++|..
T Consensus 246 ~~GLV~~vv~~-~~l~~~a~~~A~ 268 (334)
T 3t8b_A 246 QMGAVNAVAEH-AELETVGLQWAA 268 (334)
T ss_dssp HHTSCSEEECG-GGHHHHHHHHHH
T ss_pred HCCCCcEecCH-HHHHHHHHHHHH
Confidence 68999999975 445555555543
No 247
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A
Probab=84.79 E-value=34 Score=41.25 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=59.2
Q ss_pred ccCHHHHHHHHHHHHHhhc------cCCCEEEEecC-CCCCCchhhh-h---------hhHHHHHHH---HHHHH---Hc
Q 000086 1980 VWFPDSATKTAQALMDFNR------EELPLFILANW-RGFSGGQRDL-F---------EGILQAGST---IVENL---RT 2036 (2304)
Q Consensus 1980 ~~~p~sa~K~a~~i~~~~~------~~lPLv~l~d~-~Gf~~G~~~e-~---------~gilk~ga~---iv~al---~~ 2036 (2304)
.+.++-.....++++.+.. ..+-+|+|.-. +.|+.|..-. . .....+... .+..+ ..
T Consensus 59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (305)
T 3m6n_A 59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLG 138 (305)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6888888888888888765 46778887654 3487775321 1 111122222 23333 24
Q ss_pred CCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2037 YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2037 ~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.+|+|+.|- |...+||..+++.+ |+ .+|.++|+++.
T Consensus 139 ~~kPvIAaV~-G~a~GgG~~Lalac----D~--ria~~~a~f~~ 175 (305)
T 3m6n_A 139 ARAHSIALVQ-GNALGGGFEAALSC----HT--IIAEEGVMMGL 175 (305)
T ss_dssp TTCEEEEEEC-SCEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred CCCCEEEEEC-CEeehHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 6899999988 34444555555554 66 88888888876
No 248
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=84.66 E-value=19 Score=42.23 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=67.4
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh---hhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF---EGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~---~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|.+-.. .........++..+..+.+|+|+.|- |...+|
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G~a~Gg 106 (255)
T 3p5m_A 28 NAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVH-GAAVGF 106 (255)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEEC-SEEETH
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeC-Ceehhh
Confidence 58899999999999998876 46777777544 45877754111 12334456788889999999999998 344444
Q ss_pred hhhhhcccccCCccceeecccCcEEEe
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|..+++.+ |+ ++|.++++++.
T Consensus 107 G~~lalac----D~--~ia~~~a~f~~ 127 (255)
T 3p5m_A 107 GCSLALAC----DL--VVAAPASYFQL 127 (255)
T ss_dssp HHHHHHHS----SE--EEECTTCEEEC
T ss_pred HHHHHHHC----CE--EEEcCCcEEeC
Confidence 55556554 77 88888888776
No 249
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=84.59 E-value=8.8 Score=45.20 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=64.7
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhh-h------------hhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL-F------------EGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e-~------------~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
..++++......++++.+.....-+|+|.-. +.|+.|.+-. . ....+....++..+..+.+|+|+.
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 107 (261)
T 2gtr_A 28 NSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA 107 (261)
T ss_dssp TEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5888999999999998886644455666543 4588875421 1 011223456678889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|- |...+||..+++. .|+ .+|.++++++.-+
T Consensus 108 v~-G~a~GgG~~lala----cD~--ria~~~a~f~~pe 138 (261)
T 2gtr_A 108 VN-GPAIGLGASILPL----CDV--VWANEKAWFQTPY 138 (261)
T ss_dssp EC-SCEETHHHHTGGG----SSE--EEEETTCEEECCT
T ss_pred EC-CeEeeHHHHHHHh----CCE--EEEcCCCEEeCch
Confidence 88 3444445555554 477 8888888887643
No 250
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=84.44 E-value=11 Score=45.23 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=64.8
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhh-hh------------hHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL-FE------------GILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e-~~------------gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.+++++......++++.+.....-+|+|.-. +.|+.|.+-. .. ...+....++.++..+.+|+|+.
T Consensus 46 Nal~~~m~~~L~~al~~~~~d~~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 125 (291)
T 2fbm_A 46 NALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVS 125 (291)
T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5888999999999999887654456766654 4488775421 10 11123446677889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||.-+++. +|+ ++|.++|+++.
T Consensus 126 V~-G~a~GgG~~Lala----cD~--ria~~~a~f~~ 154 (291)
T 2fbm_A 126 VN-GPAIGLGASILPL----CDL--VWANEKAWFQT 154 (291)
T ss_dssp EC-SCEETHHHHTGGG----SSE--EEEETTCEEEC
T ss_pred EC-CeeecHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 98 3444445555554 477 88999998876
No 251
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=84.32 E-value=0.47 Score=52.31 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+.|+=.+.+|+.||+|++||+|+++.-
T Consensus 91 l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 91 LKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred cCCCccEEEEeCCCEEcCCCEEEEECH
Confidence 344455569999999999999999873
No 252
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=84.17 E-value=0.65 Score=46.90 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=32.1
Q ss_pred cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 723 MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 723 m~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-...|.||.+|+|..+ +++|+.|.+||+|++|+..+
T Consensus 13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK 49 (99)
T ss_dssp CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence 4567899999999888 99999999999999998754
No 253
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=83.51 E-value=41 Score=39.67 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=65.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh--------------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF--------------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~--------------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-.. ....+....++.++..+.+|+|
T Consensus 25 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (269)
T 1nzy_A 25 NALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVL 104 (269)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 58889999999999998876 46777777654 34776653210 1122234567788999999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||..+++. .|+ .+|.++++++.
T Consensus 105 Aav~-G~a~GgG~~lal~----cD~--ria~~~a~f~~ 135 (269)
T 1nzy_A 105 AAIN-GVAAGGGLGISLA----SDM--AICADSAKFVC 135 (269)
T ss_dssp EEEC-SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEEC-CeeecHHHHHHHh----CCE--EEecCCCEEeC
Confidence 9998 3344445555555 477 88888888876
No 254
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.50 E-value=0.42 Score=48.33 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=32.1
Q ss_pred CCeeeeCCCceeEEEEccCCCEE-ccCCcEEEEEcc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHI-DADTPYAEVEVM 721 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V-~~G~~l~~iEaM 721 (2304)
...|+||..|+|.+++|++|+.| ..||+|+.|+..
T Consensus 50 ~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 50 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp EEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred eeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 46799999999999999999998 999999999853
No 255
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}
Probab=83.42 E-value=0.97 Score=55.84 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=53.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccc---ccccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGRE---VYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~---vy~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+.++.|.. +.-+...+.+.+ ...-|
T Consensus 106 kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~e-A~~~G 184 (353)
T 4hdt_A 106 KPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKLGLHAALTGAPFSGAD-AIVMG 184 (353)
T ss_dssp SCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSSTTHHHHHHHHCCCBCHHH-HHHHT
T ss_pred CCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhhHHHHHHHhcCCCCCHHH-HHHcC
Confidence 699999999999999999999999999999875543 122233333321 000112222222 34689
Q ss_pred ceEEEecCcHHHHHHHHHHH
Q 000086 1846 VVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~L 1865 (2304)
+++.+|+++ +..+..+.+.
T Consensus 185 Lv~~vv~~~-~l~~~a~~la 203 (353)
T 4hdt_A 185 FADHYVPHD-KIDEFTRAVI 203 (353)
T ss_dssp SCSEECCGG-GHHHHHHHHH
T ss_pred CCcEEeCHH-HHHHHHHHHH
Confidence 999999754 3334444444
No 256
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=83.21 E-value=0.55 Score=52.90 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=39.8
Q ss_pred ccCCCEEccCCcEEEEEccccceeeecCCCcEEEE-----------------------------eeCCCCccCCCCEEE
Q 000086 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQF-----------------------------KMAEGQAMQAGELIA 752 (2304)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~-----------------------------i~~~G~~v~~G~~La 752 (2304)
|++|+.|++||+|+ =...+.|..+|+|.+ +|++|+.|++|+.|.
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence 79999999999999 467789999999975 789999999999987
No 257
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=83.20 E-value=1.3 Score=48.81 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=17.7
Q ss_pred EccCCCEEccCCcEEEEEc
Q 000086 702 LVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 702 ~V~~Gd~V~~G~~l~~iEa 720 (2304)
+|+.||+|++||+|+++.-
T Consensus 99 ~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 99 IAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp CSCTTCEECTTCEEEEECH
T ss_pred EEeCcCEECCCCEEEEECH
Confidence 9999999999999999973
No 258
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=83.13 E-value=0.56 Score=49.82 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.6
Q ss_pred CCeeeeCCCceeEEEEccCCC-EEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd-~V~~G~~l~~iEa 720 (2304)
...|.||..|+|.+++|++|| .|+.||+|++|+.
T Consensus 70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 467999999999999999998 8999999999985
No 259
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=82.94 E-value=27 Score=41.20 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh---h---hHHHHHHH-HHHHH-H--cCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF---E---GILQAGST-IVENL-R--TYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~---~---gilk~ga~-iv~al-~--~~~vP~i~~I 2045 (2304)
...++.+......++++.+.. ..+-+|+|.-. +.|+.|..-.. . ...+.... ++.++ . .+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav 109 (265)
T 3rsi_A 30 RNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAV 109 (265)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHHHHHHHTTSSCCCSSCEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEE
Confidence 358899999999999998876 46777777554 44777754210 0 01111133 77788 8 8999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |...+||..+++. .|+ ++|.++++++.
T Consensus 110 ~-G~a~GgG~~lala----cD~--~ia~~~a~f~~ 137 (265)
T 3rsi_A 110 N-GACLGGGCEMLQQ----TDI--RVSDEHATFGL 137 (265)
T ss_dssp C-SCEETHHHHHHTT----CSE--EEEETTCEEEC
T ss_pred C-CeeeHHHHHHHHH----CCE--EEecCCCEEEC
Confidence 8 3444445555555 477 88889988875
No 260
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=82.87 E-value=0.29 Score=47.29 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 4679999999999999999999999999999864
No 261
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=82.85 E-value=0.51 Score=48.62 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCeeeeCCCceeEEEEccCCC-EEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd-~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.+++|++|+ .|..|++|++|+.
T Consensus 50 ~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~ 84 (108)
T 2dne_A 50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp EEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence 467999999999999999999 8999999999984
No 262
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=82.81 E-value=37 Score=40.14 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh-hh-h------------------hHHHHHHHHHHHHH
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-LF-E------------------GILQAGSTIVENLR 2035 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~-e~-~------------------gilk~ga~iv~al~ 2035 (2304)
...+.++......++++.+.+ ..+-+|+|.-. +.|+.|.+- +. . ...+....++.++.
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (275)
T 1dci_A 25 RNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIE 104 (275)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 358899999999999998876 46777777654 347777541 11 0 01122345677889
Q ss_pred cCCCCEEEEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2036 TYKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2036 ~~~vP~i~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
.+.+|+|+.|- |-+.| |..+++. .|+ .+|.++|+++.-+
T Consensus 105 ~~~kPvIAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe 144 (275)
T 1dci_A 105 KCPKPVIAAIH--GGCIGGGVDLISA----CDI--RYCTQDAFFQVKE 144 (275)
T ss_dssp HSSSCEEEEEC--SEEETHHHHHHTT----SSE--EEEETTCEEECCG
T ss_pred hCCCCEEEEEC--CeeeHHHHHHHHh----CCE--EEEeCCCEEeCcc
Confidence 99999999998 54444 5555554 477 8888888887643
No 263
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=82.69 E-value=0.82 Score=55.66 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=40.8
Q ss_pred EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|+.|+.-..=.....|++. -+..|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 9 ~~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 9 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ----CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 445555544444455666665 4668999999999999 9999999999999999543
No 264
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=82.59 E-value=38 Score=39.68 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=65.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h------hhHHH-HHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------EGILQ-AGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~------~gilk-~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
...++++-.....++++.+.+ .++-+|+|.-. +.|+.|.+-. . ..... ....++.++..+.+|+|+.|-
T Consensus 24 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 102 (257)
T 2ej5_A 24 LNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVN- 102 (257)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEEC-
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 358889999999999998876 46777777653 4477665321 1 11111 245677889999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ .+|.+++++|.
T Consensus 103 G~a~GgG~~lalac----D~--ria~~~a~f~~ 129 (257)
T 2ej5_A 103 GAAAGAGMSLALAC----DF--RLLSEKASFAP 129 (257)
T ss_dssp SEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred ccccchhHHHHHhC----CE--EEEcCCCEEeC
Confidence 34444455555553 66 88888888876
No 265
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=81.93 E-value=38 Score=39.77 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=64.5
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh--hhh-----hHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE-----GILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~--e~~-----gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
.+++.+-.....++++.+.. ..+-+|+|.-.+ .|+.|.+- +.. ........+...+..+.+|+|+.|- |.
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G~ 105 (258)
T 4fzw_A 27 NALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVN-GY 105 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEEC-SE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEc-Cc
Confidence 58889999999999998877 567787775443 26666421 111 1111245678889999999999998 33
Q ss_pred cCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
..+||.-+++. .|+ .+|.++++++.
T Consensus 106 a~GgG~~lala----cD~--ria~~~a~f~~ 130 (258)
T 4fzw_A 106 ALGAGCELALL----CDV--VVAGENARFGL 130 (258)
T ss_dssp EETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred ceeeeeEeecc----cce--EEECCCCEEEC
Confidence 44445555554 477 88888888875
No 266
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=81.72 E-value=24 Score=41.32 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=63.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h-------hhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-------EGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~-------~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++++......++++.+.+ .++-+|+|.-. +.|+.|.+-. . ....+.. .++..+..+.+|+|+.|- |
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~l~~~~kPvIAav~-G 104 (258)
T 2pbp_A 27 NALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQF-ADWDRLSIVKTPMIAAVN-G 104 (258)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTT-HHHHHHHTCCSCEEEEEC-S
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHH-HHHHHHHhCCCCEEEEEc-C
Confidence 57889999999999998876 46777777653 2366665321 1 0001112 567788999999999998 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
...+||..+++. .|+ .+|.+++++|.-
T Consensus 105 ~a~GgG~~lala----cD~--~ia~~~a~f~~p 131 (258)
T 2pbp_A 105 LALGGGFELALS----CDL--IVASSAAEFGFP 131 (258)
T ss_dssp EEETHHHHHHHT----SSE--EEEETTCEEECG
T ss_pred EEEhHHHHHHHh----CCE--EEEcCCCEEECc
Confidence 344445555555 477 888899988863
No 267
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=81.67 E-value=2.1 Score=45.80 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=67.6
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEEE-ccCCCCCCCccCHH
Q 000086 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFVE-VPGGTNNNNYANVQ 121 (2304)
Q Consensus 48 ~~kILIan~----G~~Av~iIrsar~~Gy~v~~~~~~i~~v-~vat~~D~~~~a~~ir~ADe~v~-vp~~~~~~sY~dvd 121 (2304)
-++|.|+|. |-.+..+++.+++.||+++..+..-+.+ .+-++.+...- ..-+|-.+. +|. ..+.
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el---~~~vDlvii~vp~-------~~v~ 83 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVREL---PKDVDVIVFVVPP-------KVGL 83 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGS---CTTCCEEEECSCH-------HHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHh---CCCCCEEEEEeCH-------HHHH
Confidence 368999998 9999999999999999876433322111 11122221111 112454443 331 2355
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHH
Q 000086 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2304)
Q Consensus 122 ~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam 167 (2304)
.+++-|.+.++.++|.-.+. +..++.+.+++.|+.++||.---+
T Consensus 84 ~v~~~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~igpnc~g~ 127 (138)
T 1y81_A 84 QVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGRCIMV 127 (138)
T ss_dssp HHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSCCHHH
T ss_pred HHHHHHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEcCCcceE
Confidence 66666666889999876544 345678888889999999875433
No 268
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=81.59 E-value=1.1 Score=52.84 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=54.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-c----------Ch-HHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-T----------GF-SALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-t----------G~-~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+| |..++..||++|+.+++.+++ . |. .-+-+.+|... .-+...+.+.+ ..
T Consensus 108 ~kPvIAav~G~a~G-G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~e-A~ 185 (257)
T 1szo_A 108 EVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDART-AL 185 (257)
T ss_dssp CSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHH-HH
T ss_pred CCcEEEEECCchHH-HHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HH
Confidence 36999999999995 899999999999999988776 1 21 23445555322 01111222222 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|++|.++++ .+..+.+.+|..
T Consensus 186 ~~GLv~~vv~~-~~l~~~a~~~a~ 208 (257)
T 1szo_A 186 DYGAVNEVLSE-QELLPRAWELAR 208 (257)
T ss_dssp HHTSCSEEECH-HHHHHHHHHHHH
T ss_pred HCCCceEEeCh-HHHHHHHHHHHH
Confidence 68999999964 444555555543
No 269
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=81.38 E-value=5.2 Score=47.08 Aligned_cols=84 Identities=10% Similarity=0.016 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 105 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~e-A~~ 183 (258)
T 3lao_A 105 SKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADE-ALR 183 (258)
T ss_dssp CSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 36999999999999999999999999999998765532 223444444321 11112222222 236
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 184 ~Glv~~vv~~~-~l~~~a~~~ 203 (258)
T 3lao_A 184 MRLLTEVVEPG-EELARALEY 203 (258)
T ss_dssp TTSCSEEECTT-CHHHHHHHH
T ss_pred cCCCcEeeChh-HHHHHHHHH
Confidence 89999999764 333444443
No 270
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=81.32 E-value=0.85 Score=53.50 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh----------HHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF----------SALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~----------~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-+-+.+|... .-+...+.+.+ ...-
T Consensus 94 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~~ 172 (250)
T 2a7k_A 94 NKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPR-CVDY 172 (250)
T ss_dssp CSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHH-HHHH
T ss_pred CCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHHHHHHHhHHHHHHHHHHcCCcccHHH-HHHc
Confidence 369999999999999999999999999999987554321 02334444221 11112222222 3468
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
|++|.++++ .+..+.+.+|..-
T Consensus 173 GLv~~vv~~-~~l~~~a~~~a~~ 194 (250)
T 2a7k_A 173 RLVNQVVES-SALLDAAITQAHV 194 (250)
T ss_dssp TCCSEEECH-HHHHHHHHHHHHH
T ss_pred CCcceecCH-HHHHHHHHHHHHH
Confidence 999999964 4455555555443
No 271
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=81.28 E-value=15 Score=43.68 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-hh-----HHH---HHHHHHHHHH---cCCCCEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-EG-----ILQ---AGSTIVENLR---TYKQPVFV 2043 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-~g-----ilk---~ga~iv~al~---~~~vP~i~ 2043 (2304)
...++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-.. .. ... ....++..+. .+.+|+|+
T Consensus 41 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIA 120 (278)
T 4f47_A 41 RNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIA 120 (278)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC----------------------CTTCBTTTTBSCCCSSCEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 358899999999999999876 56777777554 34877753211 00 000 1122334455 78899999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||..+++. .|+ .+|.++++++.
T Consensus 121 av~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 150 (278)
T 4f47_A 121 AVE-GPAIAGGTEILQG----TDI--RVAAESAKFGI 150 (278)
T ss_dssp EEC-SEEETHHHHHHTT----CSE--EEEETTCEEEC
T ss_pred EEC-CEEehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 998 3444445555555 477 88888888875
No 272
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=81.27 E-value=5.1 Score=47.21 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=64.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC--CCCCCchhhh-h--------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW--RGFSGGQRDL-F--------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~--~Gf~~G~~~e-~--------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|..-. . ....+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (260)
T 1sg4_A 26 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 105 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 47888999999999998876 45778877765 3477765321 1 11223345678889999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecc--cCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYAD--RTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~--p~A~~gv 2080 (2304)
|-+.| |..+++. .|+ .+|. ++++++.
T Consensus 106 --G~a~GgG~~lala----cD~--~ia~~~~~a~f~~ 134 (260)
T 1sg4_A 106 --GACPAGGCLVALT----CDY--RILADNPRYCIGL 134 (260)
T ss_dssp --EEBCHHHHHHHTT----SSE--EEEECCTTCCBSC
T ss_pred --CeeehHHHHHHHh----CCE--EEEecCCCCEEeC
Confidence 54555 5555554 366 7777 7777654
No 273
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=81.03 E-value=10 Score=44.96 Aligned_cols=95 Identities=16% Similarity=0.051 Sum_probs=67.3
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhh-h----------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL-F----------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e-~----------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++-.....++++.++...+-+|+|.-. +.|+.|.+-. . .........++..+..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 108 (267)
T 3hp0_A 29 NTINDTLIEECLQVLNQCETSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVR 108 (267)
T ss_dssp TCBCSHHHHHHHHHHHHHHHSSCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 5788999999999999887756777888654 3477775311 1 11234456788889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ .+|.++|+++.
T Consensus 109 -G~a~GgG~~lalac----D~--ria~~~a~f~~ 135 (267)
T 3hp0_A 109 -GKVNAGGLGFVSAT----DI--AIADQTASFSL 135 (267)
T ss_dssp -SEEETTHHHHHHHS----SE--EEECTTCEEEC
T ss_pred -CEEeehHHHHHHhC----CE--EEEcCCCEEEC
Confidence 34444455555553 77 88888888876
No 274
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=80.94 E-value=0.92 Score=53.29 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=33.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1814 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l 1814 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++
T Consensus 94 ~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~ 129 (253)
T 1uiy_A 94 PKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGY 129 (253)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEEC
T ss_pred CCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeC
Confidence 369999999999999999999999999999987655
No 275
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=80.83 E-value=0.96 Score=53.45 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=37.1
Q ss_pred ccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 710 DADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 710 ~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..=...+.|++- -...|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 9 ~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 9 ITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 333445666663 3567999999999999 9999999999999999644
No 276
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=80.79 E-value=25 Score=41.89 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=63.2
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hhhh------HH-HHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LFEG------IL-QAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~~g------il-k~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
...++++......++++.++. ..+-+|+|.-.+ .|+.|..- +... .. ..... +..+..+.+|+|+.|-
T Consensus 46 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~-~~~l~~~~kPvIAav~- 123 (278)
T 3h81_A 46 LNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFAT-WGKLAAVRTPTIAAVA- 123 (278)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGG-GHHHHTCCSCEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHH-HHHHHhCCCCEEEEEC-
Confidence 358899999999999998876 467788886643 27777531 1100 00 11112 5678899999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ .+|.++++++.
T Consensus 124 G~a~GgG~~Lalac----D~--ria~~~a~f~~ 150 (278)
T 3h81_A 124 GYALGGGCELAMMC----DV--LIAADTAKFGQ 150 (278)
T ss_dssp BEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred CeeehHHHHHHHHC----CE--EEEcCCCEEEC
Confidence 34444455555554 77 88888888875
No 277
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=80.73 E-value=13 Score=44.81 Aligned_cols=98 Identities=19% Similarity=0.134 Sum_probs=63.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-h----------------hHHHHHHHHHHHHHcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-E----------------GILQAGSTIVENLRTYK 2038 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-~----------------gilk~ga~iv~al~~~~ 2038 (2304)
...++++......++++.++. ..+-+|+|.-. +.|+.|.+-.. . ........++..+..+.
T Consensus 51 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (298)
T 3qre_A 51 LNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLR 130 (298)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------------------CCTTGGGGSS
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 358899999999999998876 46777777544 44776643110 0 00111223455677889
Q ss_pred CCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2039 QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2039 vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
+|+|+.|- |...+||..+++.+ |+ ++|.++++++.-+
T Consensus 131 kPvIAaV~-G~a~GgG~~Lalac----D~--ria~~~a~f~~pe 167 (298)
T 3qre_A 131 KPVIAAIN-GPCVGIGLTQALMC----DV--RFAAAGAKFAAVF 167 (298)
T ss_dssp SCEEEEEC-SCEETHHHHHHHHS----SE--EEEETTCEEECCC
T ss_pred CCEEEEEC-CceeecchHHHhhC----CE--EEEcCCCEEECcc
Confidence 99999998 44455566666654 77 8899999988744
No 278
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=80.69 E-value=1.7 Score=49.73 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=49.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCE--EEEecCcceEecChHH--------------------------HHHhhccccccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGFSA--------------------------LNKLLGREVYSS 1831 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~--~I~~~~~~i~ltG~~a--------------------------l~~~lG~~vy~s 1831 (2304)
.|+++++.|.+..+|+|++.-||. ++|.+++.|++..|.. +.+.+|+..-.=
T Consensus 86 ~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i 165 (208)
T 2cby_A 86 CDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERI 165 (208)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 488889999999999999999998 8999999888776531 222233221000
Q ss_pred ccccCcceee-----cccCceEEEecCcHHHHHHHHHH
Q 000086 1832 HMQLGGPKIM-----ATNGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1832 ~~~lGG~~i~-----~~nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
...+..-.++ .+.|++|.+..+..+.+++++..
T Consensus 166 ~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~~~ 203 (208)
T 2cby_A 166 EADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQLEH 203 (208)
T ss_dssp HHHHHTTCEEEHHHHHHHTSCSEECSCC----------
T ss_pred HHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHHHHh
Confidence 0112222343 25899999998888877776654
No 279
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=80.59 E-value=0.86 Score=53.72 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=53.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 94 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 172 (257)
T 2ej5_A 94 EKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEE-AAA 172 (257)
T ss_dssp CSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 36999999999999999999999999999998765531 123334444221 00111122222 235
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++++ +..+.+.++.
T Consensus 173 ~GLv~~vv~~~-~l~~~a~~~a 193 (257)
T 2ej5_A 173 LGLATKVIPLS-DWEEEVKQFA 193 (257)
T ss_dssp HTCCSEEECGG-GHHHHHHHHH
T ss_pred cCCcceecChh-HHHHHHHHHH
Confidence 88999888643 3444444443
No 280
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=80.40 E-value=2.7 Score=42.15 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=52.8
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCCChhhh-hccEEEEccCCCCCCCccCHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRINAEHIR-IADQFVEVPGGTNNNNYANVQLI 123 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~G-y~v~~~~~~i~~v~vat~~D~~~~a~~ir-~ADe~v~vp~~~~~~sY~dvd~I 123 (2304)
.++++|+|+|.|.++..+++.+.+.| ++++ .+..+.. ...... .--..+.. ++.+.+.+
T Consensus 3 ~~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~-----------~~~r~~~-~~~~~~~~~~~~~~~-------d~~~~~~~ 63 (118)
T 3ic5_A 3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVT-----------VADHDLA-ALAVLNRMGVATKQV-------DAKDEAGL 63 (118)
T ss_dssp TTCEEEEEECCSHHHHHHHHHHHHCSSEEEE-----------EEESCHH-HHHHHHTTTCEEEEC-------CTTCHHHH
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCceEE-----------EEeCCHH-HHHHHHhCCCcEEEe-------cCCCHHHH
Confidence 35679999999999999999999998 6653 2211111 111111 11122322 33455666
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEE
Q 000086 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL 160 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fi 160 (2304)
.++.+ ++|.|+-.-+.... ..+.+.+.+.|+.++
T Consensus 64 ~~~~~--~~d~vi~~~~~~~~-~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 64 AKALG--GFDAVISAAPFFLT-PIIAKAAKAAGAHYF 97 (118)
T ss_dssp HHHTT--TCSEEEECSCGGGH-HHHHHHHHHTTCEEE
T ss_pred HHHHc--CCCEEEECCCchhh-HHHHHHHHHhCCCEE
Confidence 66553 68998866443221 234455555666554
No 281
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=80.14 E-value=13 Score=44.12 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=61.5
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-hhhH---------------HHHHHHHHHHHHcCCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FEGI---------------LQAGSTIVENLRTYKQ 2039 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~~gi---------------lk~ga~iv~al~~~~v 2039 (2304)
...++++......++++.+.. ..+-+|+|.-. +.|+.|.+-. .... +.....++..+..+.+
T Consensus 32 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 111 (274)
T 3tlf_A 32 LNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAK 111 (274)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCS
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCC
Confidence 358899999999999998876 46777777654 3366664311 1000 0011224455677889
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+|+.|- |...+||..+++.+ |+ ++|.++++++.
T Consensus 112 PvIAav~-G~a~GgG~~lalac----D~--~ia~~~a~f~~ 145 (274)
T 3tlf_A 112 PVLTAVN-GICCGAGMDWVTTT----DI--VIASEQATFFD 145 (274)
T ss_dssp CEEEEEC-SEEEGGGHHHHHHS----SE--EEEETTCEEEC
T ss_pred CEEEEEC-CeeehHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 9999998 34444455555553 77 88889998876
No 282
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3
Probab=79.93 E-value=0.93 Score=53.67 Aligned_cols=86 Identities=19% Similarity=0.126 Sum_probs=53.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 182 (264)
T 1wz8_A 104 PRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEE-AER 182 (264)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHH-HHH
T ss_pred CCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 36999999999999999999999999999998765521 122333334221 00111111111 235
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+.+.+|..
T Consensus 183 ~GLv~~vv~~~-~l~~~a~~~a~ 204 (264)
T 1wz8_A 183 LGLVALAVEDE-KVYEKALEVAE 204 (264)
T ss_dssp HTSSSEEECGG-GHHHHHHHHHH
T ss_pred CCCceeecChh-HHHHHHHHHHH
Confidence 89999998643 44455555443
No 283
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=79.87 E-value=1.1 Score=53.50 Aligned_cols=86 Identities=19% Similarity=0.129 Sum_probs=54.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~e-A~~ 184 (276)
T 2j5i_A 106 AKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQK-AAE 184 (276)
T ss_dssp SSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHH-HHH
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHH-HHH
Confidence 36999999999999999999999999999998765431 222344444321 00111111111 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.+.+|..
T Consensus 185 ~GLv~~vv~~-~~l~~~a~~~a~ 206 (276)
T 2j5i_A 185 MGLVNESVPL-AQLREVTIELAR 206 (276)
T ss_dssp HTSSSEEECH-HHHHHHHHHHHH
T ss_pred cCCccEeeCH-HHHHHHHHHHHH
Confidence 8999999964 344455555543
No 284
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=79.72 E-value=1.1 Score=52.74 Aligned_cols=86 Identities=19% Similarity=0.103 Sum_probs=55.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+.+.+.+ +=...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a-~eA~~ 177 (256)
T 3qmj_A 99 PKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDA-EEALR 177 (256)
T ss_dssp CSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEH-HHHHH
T ss_pred CCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH-HHHHH
Confidence 36999999999999999999999999999997755321 222444444321 111112221 11346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.+++|..
T Consensus 178 ~GLv~~vv~~-~~l~~~a~~~a~ 199 (256)
T 3qmj_A 178 MGLVWRICSP-EELLPEARRHAE 199 (256)
T ss_dssp HTSSSEEECG-GGHHHHHHHHHH
T ss_pred CCCccEEeCH-hHHHHHHHHHHH
Confidence 8999999965 445555555543
No 285
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=79.66 E-value=1 Score=52.70 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=57.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+.+.+|... .-+...+.+.+ ...
T Consensus 90 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 168 (243)
T 2q35_A 90 EIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKE-LAE 168 (243)
T ss_dssp CSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999875542 1223444444322 00111122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
.|++|.++++ .+..+.+.+|..-+
T Consensus 169 ~GLv~~vv~~-~~l~~~a~~~a~~l 192 (243)
T 2q35_A 169 RGIPFPVVSR-QDVLNYAQQLGQKI 192 (243)
T ss_dssp TTCSSCEECH-HHHHHHHHHHHHHH
T ss_pred cCCCCEecCh-hHHHHHHHHHHHHH
Confidence 8999999864 45666666665544
No 286
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=79.59 E-value=1.1 Score=53.75 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=53.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 119 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~e-A~~ 197 (291)
T 2fbm_A 119 KKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTARE-ACA 197 (291)
T ss_dssp CSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHH-HHH
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHH-HHH
Confidence 3699999999999999999999999999999876543 1223444445322 01111122222 236
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.++++.
T Consensus 198 ~GLV~~vv~~~-~l~~~a~~~a 218 (291)
T 2fbm_A 198 KGLVSQVFLTG-TFTQEVMIQI 218 (291)
T ss_dssp TTSCSEEECST-TSHHHHHHHH
T ss_pred CCCcceecChh-HHHHHHHHHH
Confidence 89999998653 3334444443
No 287
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=79.52 E-value=2.8 Score=45.13 Aligned_cols=107 Identities=7% Similarity=0.043 Sum_probs=65.6
Q ss_pred cEEEEECc----hHHHHHHHHHHHHcCCcccccccce--eEE-EEEeccCCCCCChhhhhccEEEE-ccCCCCCCCccCH
Q 000086 49 HSILIANN----GMAAVKFIRSIRTWAYETFGTEKAI--LLV-AMATPEDMRINAEHIRIADQFVE-VPGGTNNNNYANV 120 (2304)
Q Consensus 49 ~kILIan~----G~~Av~iIrsar~~Gy~v~~~~~~i--~~v-~vat~~D~~~~a~~ir~ADe~v~-vp~~~~~~sY~dv 120 (2304)
++|.|+|. |-.+..+++.+++.||+++..+... ..+ .+-++.+...- ..-+|-.+. +|+ ..+
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el---~~~~Dlvii~vp~-------~~v 83 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADV---PEKVDMVDVFRNS-------EAA 83 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTC---SSCCSEEECCSCS-------THH
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHc---CCCCCEEEEEeCH-------HHH
Confidence 57999998 7789999999999999876333222 111 11222221110 112344433 332 235
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHH
Q 000086 121 QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2304)
Q Consensus 121 d~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam 167 (2304)
..+++-|.+.++.+||.-.|.. ..++.+.+++.|+.++||.---+
T Consensus 84 ~~v~~~~~~~g~~~i~i~~~~~--~~~l~~~a~~~Gi~~igpnc~g~ 128 (145)
T 2duw_A 84 WGVAQEAIAIGAKTLWLQLGVI--NEQAAVLAREAGLSVVMDRCPAI 128 (145)
T ss_dssp HHHHHHHHHHTCCEEECCTTCC--CHHHHHHHHTTTCEEECSCCHHH
T ss_pred HHHHHHHHHcCCCEEEEcCChH--HHHHHHHHHHcCCEEEcCCeeeE
Confidence 6666666668899998654433 45677888889999999875443
No 288
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*
Probab=79.42 E-value=1 Score=52.32 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec--------C---hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT--------G---FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt--------G---~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. + ..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~e-A~~ 173 (233)
T 3r6h_A 95 PKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGET-ALA 173 (233)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHH-HHH
T ss_pred CCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 3699999999999999999999999999998765432 1 111223333221 00111122222 236
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.+++|..
T Consensus 174 ~Glv~~vv~~-~~l~~~a~~~a~ 195 (233)
T 3r6h_A 174 AGFIDEISLP-EVVLSRAEEAAR 195 (233)
T ss_dssp HTSCSEECCG-GGHHHHHHHHHH
T ss_pred cCCCcEeeCH-HHHHHHHHHHHH
Confidence 8999999975 445555555543
No 289
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=79.37 E-value=1 Score=53.01 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=53.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 173 (258)
T 2pbp_A 95 KTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKE-AEQ 173 (258)
T ss_dssp CSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 46999999999999999999999999999998765432 122334444221 00111221111 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+++|.
T Consensus 174 ~GLv~~vv~~-~~l~~~a~~~a 194 (258)
T 2pbp_A 174 LGIVNRVVSP-ELLMEETMRLA 194 (258)
T ss_dssp TTSCSEEECG-GGHHHHHHHHH
T ss_pred cCCcceeeCh-HHHHHHHHHHH
Confidence 8999998864 34444444443
No 290
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=79.34 E-value=22 Score=42.56 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=66.3
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh-hhh----------HHHHHHHHHHHHHcCCCCEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL-FEG----------ILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e-~~g----------ilk~ga~iv~al~~~~vP~i~ 2043 (2304)
...++++......++++.+.. .++=+|+|.-.. .|+.|.+-. ... .......++..+..+.+|+|+
T Consensus 49 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 128 (289)
T 3t89_A 49 RNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVA 128 (289)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEE
Confidence 358999999999999999876 567788887654 477664311 100 011234677889999999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||..+++. +|+ ++|.+++++|.
T Consensus 129 aV~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 158 (289)
T 3t89_A 129 MVA-GYSIGGGHVLHMM----CDL--TIAADNAIFGQ 158 (289)
T ss_dssp EEC-SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEC-CEeehHHHHHHHh----CCE--EEEeCCCEEec
Confidence 998 3444445555555 477 88999999887
No 291
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=79.32 E-value=1 Score=53.27 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=33.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT 1815 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt 1815 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~p 133 (260)
T 1mj3_A 97 KKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQP 133 (260)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECG
T ss_pred CCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCc
Confidence 4699999999999999999999999999999876653
No 292
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=79.21 E-value=11 Score=44.50 Aligned_cols=96 Identities=19% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
...++++......++++.+.. ..+=+|+|.-. +.|+.|.+-..-.-......+...+..+.+|+|+.|- |...+||.
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~-G~a~GgG~ 108 (256)
T 3pe8_A 30 RNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAIN-GAAVTGGL 108 (256)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEEC-SEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEEC-CeeechHH
Confidence 358899999999999998876 56667776543 4588775422110001112233556778899999998 34444455
Q ss_pred hhhcccccCCccceeecccCcEEEe
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+++.+ |+ .+|.++++++.
T Consensus 109 ~lalac----D~--~ia~~~a~f~~ 127 (256)
T 3pe8_A 109 ELALYC----DI--LIASENAKFAD 127 (256)
T ss_dssp HHHHHS----SE--EEEETTCEEEC
T ss_pred HHHHhC----CE--EEEcCCCEEEC
Confidence 555554 77 88889988875
No 293
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=79.14 E-value=1 Score=53.45 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=53.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 100 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 178 (269)
T 1nzy_A 100 KRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEE-AKD 178 (269)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHH-HHH
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHH
Confidence 36999999999999999999999999999998765431 122333333211 11112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.++++ .+..+.+.+|
T Consensus 179 ~GLv~~vv~~-~~l~~~a~~~ 198 (269)
T 1nzy_A 179 WGLVSRVYPK-DEFREVAWKV 198 (269)
T ss_dssp HTSCSCEECH-HHHHHHHHHH
T ss_pred CCCccEeeCH-HHHHHHHHHH
Confidence 8888888864 3444444444
No 294
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=78.98 E-value=1.2 Score=53.29 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=32.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1814 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l 1814 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 122 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~ 157 (276)
T 3rrv_A 122 RIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLAD 157 (276)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEEC
T ss_pred CCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEEC
Confidence 369999999999999999999999999999987654
No 295
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=78.93 E-value=1.1 Score=53.05 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=49.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~e-A~~ 177 (266)
T 3fdu_A 99 SKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAET-ALQ 177 (266)
T ss_dssp CSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHH-HHH
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 3699999999999999999999999999999875543 1223444444321 00111222222 246
Q ss_pred cCceEEEec
Q 000086 1844 NGVVHLTVS 1852 (2304)
Q Consensus 1844 nGv~d~~v~ 1852 (2304)
-|++|.+++
T Consensus 178 ~GLv~~vv~ 186 (266)
T 3fdu_A 178 AGLVNEIVE 186 (266)
T ss_dssp TTSCSEECS
T ss_pred CCCHHHHHH
Confidence 899999997
No 296
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=78.91 E-value=1.2 Score=52.62 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=54.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+ +=...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a-~eA~~ 180 (265)
T 3rsi_A 102 TKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTA-FEAYH 180 (265)
T ss_dssp SSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH-HHHHH
Confidence 46999999999999999999999999999998765431 223444444321 001111121 11346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+++|.
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~a 201 (265)
T 3rsi_A 181 FGLVGHVVPAG-TALDKARSLA 201 (265)
T ss_dssp TTSCSEEESTT-CHHHHHHHHH
T ss_pred CCCccEecChh-HHHHHHHHHH
Confidence 89999999754 4444444443
No 297
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=78.87 E-value=1.1 Score=53.09 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=33.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT 1815 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt 1815 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.
T Consensus 96 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~p 132 (261)
T 1ef8_A 96 PKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMT 132 (261)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECC
T ss_pred CCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCc
Confidence 3699999999999999999999999999999876553
No 298
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=78.79 E-value=17 Score=43.14 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=66.6
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++++......++++.++ ..+-+|+|.-. +.|+.|.+-. .....+....++..+..+.+|+|+.|-
T Consensus 38 Nal~~~~~~~L~~al~~~d-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 114 (275)
T 3hin_A 38 NALNDGLMAALKDCLTDIP-DQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALK-- 114 (275)
T ss_dssp TCBCHHHHHHHHHHTSSCC-TTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHhC-cCceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 5889999999999998885 57777777543 4477774321 112234556778889999999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|-+.| |.-+++. .|+ .+|.+++++|.-+
T Consensus 115 G~a~GgG~~lala----cD~--ria~~~a~f~~pe 143 (275)
T 3hin_A 115 GAVIGGGLELACA----AHI--RVAEASAYYALPE 143 (275)
T ss_dssp SEEETHHHHHHHH----SSE--EEEETTCEEECGG
T ss_pred CeeehHHHHHHHh----CCE--EEEcCCCEEECch
Confidence 44455 5555555 477 8888888887533
No 299
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=78.46 E-value=25 Score=41.48 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=64.6
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-hh------hHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FE------GILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~~------gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
...+.++......++++.+.. ..+-+|+|.-.+ .|+.|.+-. .. ...+....++.++..+.+|+|+.|- |
T Consensus 31 ~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G 109 (263)
T 3moy_A 31 LNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVA-G 109 (263)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEEC-B
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEEC-C
Confidence 358899999999999998876 467778886643 277665311 10 0012234567888999999999998 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
...+||..+++. .|+ .+|.++++++.
T Consensus 110 ~a~GgG~~lala----cD~--~ia~~~a~f~~ 135 (263)
T 3moy_A 110 YALGGGCELAML----CDL--VIAADTARFGQ 135 (263)
T ss_dssp EEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EeehHHHHHHHH----CCE--EEecCCCEEeC
Confidence 344445555555 376 88888888875
No 300
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=78.45 E-value=0.96 Score=55.49 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=46.3
Q ss_pred EEEEccCCCEEccCCcEEEEEcc-ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 699 LRYLVSDGSHIDADTPYAEVEVM-KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 699 v~~~V~~Gd~V~~G~~l~~iEaM-Km~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.-..|+.|+....=...+.|++. .-+..|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 31 ~~~~v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 31 AVAPATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp CEEECEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred EEEEeeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 33445555555555666777775 56788999999999999 9999999999999999863
No 301
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=78.36 E-value=1.2 Score=53.14 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=53.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~e-A~~ 193 (278)
T 4f47_A 115 KKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAE-AKE 193 (278)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 4699999999999999999999999999999876542 1223444444321 00111122211 346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 194 ~GLv~~vv~~~-~l~~~a~~~ 213 (278)
T 4f47_A 194 MGLVGHVVPDG-QALTKALEI 213 (278)
T ss_dssp TTSCSEEECTT-CHHHHHHHH
T ss_pred CCCceEeeChh-HHHHHHHHH
Confidence 89999999764 333334433
No 302
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=78.23 E-value=2.3 Score=45.75 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=70.8
Q ss_pred hHHHHHHhcCCCCCccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEEE-
Q 000086 34 EVDEFCRSLGGKKPIHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFVE- 107 (2304)
Q Consensus 34 ~~~~~~~~~~g~~~~~kILIan~----G~~Av~iIrsar~~Gy~v~~~~~~i~~v-~vat~~D~~~~a~~ir~ADe~v~- 107 (2304)
.++.+.+. .++|.|+|. |-.+.++++.+++.||+++..+..-..+ .+-++.+...-. .-.|-.+.
T Consensus 14 ~l~~ll~~------p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~---~~vDlvvi~ 84 (144)
T 2d59_A 14 DIREILTR------YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIP---DKIEVVDLF 84 (144)
T ss_dssp HHHHHHHH------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCS---SCCSEEEEC
T ss_pred HHHHHHcC------CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcC---CCCCEEEEE
Confidence 45565532 368999997 6788999999999999876332221111 111221111100 12344433
Q ss_pred ccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHH
Q 000086 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2304)
Q Consensus 108 vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam 167 (2304)
+|. ..+..+++-|.+.++.++|.-.|.. ..++.+.++++|+.++||.---+
T Consensus 85 vp~-------~~~~~vv~~~~~~gi~~i~~~~g~~--~~~l~~~a~~~Gi~vvGpnc~gv 135 (144)
T 2d59_A 85 VKP-------KLTMEYVEQAIKKGAKVVWFQYNTY--NREASKKADEAGLIIVANRCMMR 135 (144)
T ss_dssp SCH-------HHHHHHHHHHHHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEESCCHHH
T ss_pred eCH-------HHHHHHHHHHHHcCCCEEEECCCch--HHHHHHHHHHcCCEEEcCCchhh
Confidence 322 2256667777778899999766653 45688888889999999865433
No 303
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=78.19 E-value=1.1 Score=53.70 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=53.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- .. +-+.+|... .-+...+.+.+ ...
T Consensus 126 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~e-A~~ 203 (287)
T 2vx2_A 126 PVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQE-ALL 203 (287)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHH-HHH
Confidence 36999999999999999999999999999998765432 12 334444221 00111122222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+....+.+|.
T Consensus 204 ~GLv~~vv~~-~~l~~~a~~~a 224 (287)
T 2vx2_A 204 HGLLSKVVPE-AELQEETMRIA 224 (287)
T ss_dssp HTSCSEEECG-GGHHHHHHHHH
T ss_pred CCCcceecCH-HHHHHHHHHHH
Confidence 8999998864 33444444443
No 304
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=78.08 E-value=1.1 Score=53.68 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=54.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |...+-+.+|... .-+...+.+.+ ...
T Consensus 123 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 201 (289)
T 3t89_A 123 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQ-ALD 201 (289)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHH-HHH
Confidence 3699999999999999999999999999999887653 1223333344321 00111111111 236
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+++|.
T Consensus 202 ~GLV~~vv~~~-~l~~~a~~~A 222 (289)
T 3t89_A 202 MGLVNTVVPLA-DLEKETVRWC 222 (289)
T ss_dssp HTSSSEEECGG-GHHHHHHHHH
T ss_pred CCCceEeeCHH-HHHHHHHHHH
Confidence 89999999744 4444444443
No 305
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=77.82 E-value=1.1 Score=53.39 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=32.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1814 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l 1814 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~ 142 (273)
T 2uzf_A 107 PKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQ 142 (273)
T ss_dssp SSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEEC
Confidence 369999999999999999999999999999987654
No 306
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=77.71 E-value=1.2 Score=52.84 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=54.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC----------hHHHHHhhcccc----ccccc--ccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG----------FSALNKLLGREV----YSSHM--QLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG----------~~al~~~lG~~v----y~s~~--~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.- ..-|-+.+|... .-+.. .+.+.+ ..
T Consensus 110 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~e-A~ 188 (274)
T 3tlf_A 110 AKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAGRELVRVSRVLPRSIALRMALMGKHERMSAQR-AY 188 (274)
T ss_dssp CSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCCCHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHH-HH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcccchHHHHHHHHhCHHHHHHHHHcCCCCccCHHH-HH
Confidence 36999999999999999999999999999998755421 122333333221 00111 112211 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
.-|++|.++++ .+..+.+++|..-
T Consensus 189 ~~GLv~~vv~~-~~l~~~a~~~a~~ 212 (274)
T 3tlf_A 189 ELGLISEIVEH-DRLLERAHEIADI 212 (274)
T ss_dssp HHTSSSEEECG-GGHHHHHHHHHHH
T ss_pred HCCCCCeecCH-HHHHHHHHHHHHH
Confidence 68999999975 4455555555443
No 307
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=77.65 E-value=1.1 Score=53.02 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=33.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT 1815 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt 1815 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+.
T Consensus 108 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~p 144 (267)
T 3oc7_A 108 RLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALT 144 (267)
T ss_dssp SSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECC
T ss_pred CCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCc
Confidence 3699999999999999999999999999999876543
No 308
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}
Probab=77.63 E-value=7.9 Score=46.39 Aligned_cols=95 Identities=17% Similarity=0.083 Sum_probs=65.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh-hhhh-------------HHHHHHHHHHHHHcCCCCE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LFEG-------------ILQAGSTIVENLRTYKQPV 2041 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~-e~~g-------------ilk~ga~iv~al~~~~vP~ 2041 (2304)
..+.++-.....++++.+.. ..+=+|+|.-.. .|+.|.+- +... .......++.++..+.+|+
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 109 (287)
T 3gkb_A 30 NVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVT 109 (287)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 58889999999999998876 467788886653 37777531 1110 0112345788899999999
Q ss_pred EEEEcCCCcCCchhhhhcccccCCccceeeccc-CcEEEe
Q 000086 2042 FVYIPMMAELRGGAWVVVDSRINSDHIEMYADR-TAKGNV 2080 (2304)
Q Consensus 2042 i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p-~A~~gv 2080 (2304)
|+.|- |...+||..+++.+ |+ ++|.+ +|+++.
T Consensus 110 IAaV~-G~a~GgG~~lalac----D~--ria~~~~a~f~~ 142 (287)
T 3gkb_A 110 IVKLA-GKARGGGAEFVAAA----DM--AFAAAETAGLGQ 142 (287)
T ss_dssp EEEEC-SEEETHHHHHHHHS----SE--EEEETTTCEEEC
T ss_pred EEEEC-CeeehHHHHHHHHC----CE--EEEeCCCcEEEC
Confidence 99998 34444455555554 76 88888 888876
No 309
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3
Probab=77.50 E-value=21 Score=42.13 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-----h------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-----F------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-----~------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++++......++++.+.+ ..+=+|+|.-. +.|+.|.+-. . ....+....++.++..+.+|+|+.|
T Consensus 32 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (264)
T 1wz8_A 32 NAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAV 111 (264)
T ss_dssp GCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 47888999999999998876 45667777543 4577765321 0 1122334567788999999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |..+++. .|+ .+|.+++++|.
T Consensus 112 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 139 (264)
T 1wz8_A 112 E--KVAVGAGLALALA----ADI--AVVGKGTRLLD 139 (264)
T ss_dssp C--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred C--CeeechhHHHHHh----CCE--EEecCCCEEeC
Confidence 8 54455 5555554 477 88888888876
No 310
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=77.44 E-value=1.2 Score=52.64 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=53.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~~ 179 (262)
T 3r9q_A 101 SKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANE-ALD 179 (262)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 4699999999999999999999999999999876543 1223444444321 00111122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 180 ~GLv~~vv~~~-~l~~~a~~~ 199 (262)
T 3r9q_A 180 IGLVNRVVARG-QAREAAETL 199 (262)
T ss_dssp TTSCSEEECTT-CHHHHHHHH
T ss_pred cCCccEecChh-HHHHHHHHH
Confidence 89999999754 333333333
No 311
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=77.25 E-value=21 Score=42.21 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=67.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh-hhh----------hHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-LFE----------GILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~-e~~----------gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
...++++......++++.+.+ ..+=+|+|.-. +.|+.|.+- +.. ........++..+..+.+|+|+.
T Consensus 26 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 105 (266)
T 3fdu_A 26 KNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIA 105 (266)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 358899999999999998876 45777777543 448777431 111 12234567788999999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
|- |...+||..+++. .|+ .+|.++++++.-
T Consensus 106 v~-G~a~GgG~~lala----cD~--ria~~~a~f~~p 135 (266)
T 3fdu_A 106 VK-GVAIGIGVTILLQ----ADL--VFADNTALFQIP 135 (266)
T ss_dssp EC-SEEETHHHHGGGG----CSE--EEECTTCEEECC
T ss_pred EC-CEEehHHHHHHHh----CCE--EEEcCCCEEECc
Confidence 98 3444445555555 477 888888888753
No 312
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=77.19 E-value=1.3 Score=52.66 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=52.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 185 (264)
T 3he2_A 107 PMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEI-ALH 185 (264)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHH-HHH
Confidence 36999999999999999999999999999998755421 112233333221 00111122221 236
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++ ..++.+.+.++.
T Consensus 186 ~GLV~~v~~-~~~a~~~A~~la 206 (264)
T 3he2_A 186 TGMANRIGT-LADAQAWAAEIA 206 (264)
T ss_dssp HTSCSEECC-HHHHHHHHHHHH
T ss_pred CCCeEEEec-HHHHHHHHHHHH
Confidence 899999885 344544444443
No 313
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=77.05 E-value=9.6 Score=45.68 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=64.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-C-CCCc-hhhhhh-----------hHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-G-FSGG-QRDLFE-----------GILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-G-f~~G-~~~e~~-----------gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
..++++......++++.+.. ..+=+|+|.-.. . |++| .-.+.. ...+....++..+..+.+|+|+
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 108 (289)
T 3h0u_A 29 NLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIA 108 (289)
T ss_dssp CCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 47889999999999999876 457777776543 4 4566 221111 1122345678889999999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccC-cEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gv 2080 (2304)
.|- |...+||..+++.+ |+ ++|.++ ++++.
T Consensus 109 aV~-G~a~GgG~~Lalac----D~--ria~~~~a~f~~ 139 (289)
T 3h0u_A 109 KLR-GRARGAGSEFLLAC----DM--RFASRENAILGQ 139 (289)
T ss_dssp EEC-SEEETHHHHHHHHS----SE--EEEETTTCEEEC
T ss_pred EEC-CEeehhhHHHHHhC----CE--EEEeCCCcEEeC
Confidence 998 34444455555553 77 888888 88876
No 314
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=77.04 E-value=1.3 Score=53.17 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecC-cceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.++ +.+.+. |..-|-+.+|... .-+...+.+.+ ..
T Consensus 103 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~e-A~ 181 (289)
T 3h0u_A 103 PAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADL-AE 181 (289)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HH
T ss_pred CCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 3699999999999999999999999999998 765543 2223444444321 00111122222 24
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.-|++|.++++ .+..+.++++.
T Consensus 182 ~~GLV~~vv~~-~~l~~~a~~lA 203 (289)
T 3h0u_A 182 RYGWVNRAVPD-AELDEFVAGIA 203 (289)
T ss_dssp HHTSSSEEECH-HHHHHHHHHHH
T ss_pred HCCCccEecCH-HHHHHHHHHHH
Confidence 68999999864 44445555543
No 315
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=76.99 E-value=1.2 Score=53.17 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=54.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec-----ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT-----GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt-----G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |..-+-+.+|... .-+.+.+.+.+ ..
T Consensus 113 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~e-A~ 191 (279)
T 3g64_A 113 PFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPE-AE 191 (279)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HH
T ss_pred CCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HH
Confidence 36999999999999999999999999999987644 33 1223444445321 00111122221 24
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.-|++|.+++++ +..+.+++|.
T Consensus 192 ~~GLv~~vv~~~-~l~~~a~~~a 213 (279)
T 3g64_A 192 RIGLISELTEEG-RADEAARTLA 213 (279)
T ss_dssp HHTCCSEECCTT-CHHHHHHHHH
T ss_pred HCCCCCEecCch-HHHHHHHHHH
Confidence 689999999754 3444444443
No 316
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=76.97 E-value=30 Score=42.40 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--------CCCCchhhhhhh----------------H----HHHHHH
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--------GFSGGQRDLFEG----------------I----LQAGST 2029 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--------Gf~~G~~~e~~g----------------i----lk~ga~ 2029 (2304)
..+.++......++++.+.. ..+=+|+|.-.. .|+.|..-.... . ......
T Consensus 79 NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
T 3t8b_A 79 NAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILE 158 (334)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHH
Confidence 58899999999999999876 467788886554 377665321100 0 011335
Q ss_pred HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecc-cCcEEEeeC
Q 000086 2030 IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYAD-RTAKGNVLE 2082 (2304)
Q Consensus 2030 iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~-p~A~~gvl~ 2082 (2304)
++..+..+.+|+|+.|- |...+||.-+++.+ |+ .+|. ++|+++.-+
T Consensus 159 ~~~~i~~~~kPvIAaV~-G~A~GgG~~Lalac----D~--riAs~~~A~f~~pe 205 (334)
T 3t8b_A 159 VQRLIRFMPKVVICLVN-GWAAGGGHSLHVVC----DL--TLASREYARFKQTD 205 (334)
T ss_dssp HHHHHHHSSSEEEEEEC-SEEETHHHHHHHHS----SE--EEEETTTCEEECCC
T ss_pred HHHHHHhCCCCEEEEEC-CccccCcchhHhhC----CE--EEEeCCCcEEECcc
Confidence 67788999999999998 34444455555554 66 7887 888877643
No 317
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=76.71 E-value=1.3 Score=52.44 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=53.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEe--cCcceEec-----------ChHHHHHhhcccc----cccccccCcceee
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQR--LDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIM 1841 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~--~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~ 1841 (2304)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-+-+.+|... .-+...+.+.+ .
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~e-A 175 (260)
T 1sg4_A 97 NLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAE-A 175 (260)
T ss_dssp SSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHH-H
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHH-H
Confidence 36999999999999999999999999999 77765432 1122333444321 00111222222 3
Q ss_pred cccCceEEEecCcHHHHHHHHHHHh
Q 000086 1842 ATNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1842 ~~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
..-|++|.++++ .+..+.+++|..
T Consensus 176 ~~~GLv~~vv~~-~~l~~~a~~~a~ 199 (260)
T 1sg4_A 176 LQVGIVDQVVPE-EQVQSTALSAIA 199 (260)
T ss_dssp HHHTSSSEEECG-GGHHHHHHHHHH
T ss_pred HHcCCCCEecCH-HHHHHHHHHHHH
Confidence 468999998854 344444545443
No 318
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=76.70 E-value=1.2 Score=52.93 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=55.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 105 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~e-A~~ 183 (272)
T 1hzd_A 105 PVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKE-AKA 183 (272)
T ss_dssp SSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHH-HHH
T ss_pred CCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 36999999999999999999999999999998765432 122334444321 00111111111 235
Q ss_pred cCceEEEecCcH---HHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDL---EGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~---~~~~~i~~~Lsy 1867 (2304)
-|++|.+++++. ++++.++++..-
T Consensus 184 ~GLv~~vv~~~~l~~~~~~~a~~~a~~ 210 (272)
T 1hzd_A 184 VGLISHVLEQNQEGDAAYRKALDLARE 210 (272)
T ss_dssp HTSCSEEECCCTTSCHHHHHHHHHHHT
T ss_pred CCCcceecChhhhhHHHHHHHHHHHHH
Confidence 889998887654 344555555543
No 319
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=76.69 E-value=1.3 Score=53.18 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------C-hHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------G-FSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G-~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. | ..-+-+.+|... .-+...+.+.+ ..
T Consensus 123 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~ 201 (290)
T 3sll_A 123 HQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADE-AE 201 (290)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HH
T ss_pred CCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 3699999999999999999999999999999775432 1 122444444321 11111222222 24
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.-|++|.+++++ +..+.+++|.
T Consensus 202 ~~GLV~~vv~~~-~l~~~a~~~a 223 (290)
T 3sll_A 202 RIGLVSRKVASE-SLLEECYAIG 223 (290)
T ss_dssp HHTSSSEEECGG-GHHHHHHHHH
T ss_pred HCCCccEEeChh-HHHHHHHHHH
Confidence 689999999754 4444444443
No 320
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=76.49 E-value=1.4 Score=52.14 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=55.9
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...-
T Consensus 96 kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~e-A~~~ 174 (258)
T 4fzw_A 96 KPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQ-AQQA 174 (258)
T ss_dssp SCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHHH
T ss_pred CCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHH-HHHC
Confidence 699999999999999999999999999999875543 1223444444322 00111122211 2468
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
|++|.+++++ +..+..++|..-
T Consensus 175 GLv~~vv~~~-~l~~~a~~~a~~ 196 (258)
T 4fzw_A 175 GLVSDVFPSD-LTLEYALQLASK 196 (258)
T ss_dssp TSCSEEECTT-THHHHHHHHHHH
T ss_pred CCeeEEeCch-HHHHHHHHHHHH
Confidence 9999999754 444555555443
No 321
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=76.34 E-value=1.4 Score=52.40 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=53.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~e-A~~ 179 (267)
T 3r9t_A 101 DKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAA-ARD 179 (267)
T ss_dssp SSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4799999999999999999999999999999875543 1223444444321 00111122222 246
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 180 ~GLv~~vv~~~-~l~~~a~~~ 199 (267)
T 3r9t_A 180 WGLINEVVEAG-SVLDAALAL 199 (267)
T ss_dssp HTSSSEEECTT-CHHHHHHHH
T ss_pred CCCccEEcChh-HHHHHHHHH
Confidence 89999999754 333334443
No 322
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}
Probab=76.04 E-value=1.3 Score=51.48 Aligned_cols=88 Identities=17% Similarity=0.097 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecC-cceE-------ec-Ch---HHHHHhhcccccccccccCccee----ec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPII-------LT-GF---SALNKLLGREVYSSHMQLGGPKI----MA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~-------lt-G~---~al~~~lG~~vy~s~~~lGG~~i----~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.++ +.+. +. +. .-+-+.+|..... ..=+-|-.+ ..
T Consensus 94 ~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~-~l~ltg~~i~A~eA~ 172 (232)
T 3ot6_A 94 PFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFN-RSVINAEMFDPEGAM 172 (232)
T ss_dssp SSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHH-HHHTSCCEECHHHHH
T ss_pred CCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHH-HHHHcCCccCHHHHH
Confidence 3699999999999999999999999999997 5543 33 11 1122223322100 001122222 24
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
.-|++|.++++ .+..+.+++|..-+
T Consensus 173 ~~GLv~~vv~~-~~l~~~a~~~a~~l 197 (232)
T 3ot6_A 173 AAGFLDKVVSV-EELQGAALAVAAQL 197 (232)
T ss_dssp HHTSCSEEECT-TTHHHHHHHHHHHH
T ss_pred HCCCCCEecCH-HHHHHHHHHHHHHH
Confidence 68999999975 44555555554433
No 323
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A
Probab=75.82 E-value=1.4 Score=52.55 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=53.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh-----------HHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF-----------SALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~-----------~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-+-+.+|... .-+...+.+.+ ...
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~e-A~~ 185 (272)
T 3qk8_A 107 DKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEE-AER 185 (272)
T ss_dssp CSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 369999999999999999999999999999987654321 12223333211 00111111111 235
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+.+++|..
T Consensus 186 ~GLv~~vv~~~-~l~~~a~~~a~ 207 (272)
T 3qk8_A 186 IGLVSTCVDDD-EVLPTATRLAE 207 (272)
T ss_dssp HTSSSEEECGG-GHHHHHHHHHH
T ss_pred CCCCcEeeCHh-HHHHHHHHHHH
Confidence 79999999754 45555555543
No 324
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=75.80 E-value=2 Score=50.84 Aligned_cols=84 Identities=12% Similarity=0.003 Sum_probs=53.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-----------cCh-HHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-----------TGF-SALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-----------tG~-~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+| |..++..||++|+.+++.+.+ .|. .-+-+.+|... .-+...+.+.+ ..
T Consensus 117 ~kPvIAav~G~a~G-G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~e-A~ 194 (263)
T 2j5g_A 117 EVPVISAVNGAALL-HSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQ-AY 194 (263)
T ss_dssp CSCEEEEECSEECS-CGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHH-HH
T ss_pred CCCEEEEECCcchH-HHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HH
Confidence 36999999999995 899999999999999987766 121 23444444322 11112222222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.-|++|.+++++ +..+.+.+|.
T Consensus 195 ~~GLv~~vv~~~-~l~~~a~~~a 216 (263)
T 2j5g_A 195 ELNVVHEVLPQS-KLMERAWEIA 216 (263)
T ss_dssp HTTSCSEEECGG-GHHHHHHHHH
T ss_pred HCCCccEecChH-HHHHHHHHHH
Confidence 699999999754 4444444443
No 325
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=75.77 E-value=27 Score=41.54 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=64.5
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-hh-------------hHHHHHHHHHHHHHcCCCCE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FE-------------GILQAGSTIVENLRTYKQPV 2041 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~~-------------gilk~ga~iv~al~~~~vP~ 2041 (2304)
...++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-. .. ........++.++..+.+|+
T Consensus 41 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 120 (279)
T 3t3w_A 41 ANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPS 120 (279)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 358899999999999998876 46777777655 3477775311 00 00112234567888999999
Q ss_pred EEEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2042 FVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2042 i~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+.|- |-+.| |.-+++. +|+ ++|.++++++.
T Consensus 121 IAav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 152 (279)
T 3t3w_A 121 IAAVQ--GRCISGGLLLCWP----CDL--IIAAEDALFSD 152 (279)
T ss_dssp EEEEC--SEEEGGGHHHHTT----SSE--EEEETTCEEEC
T ss_pred EEEEC--CeEhHHHHHHHHh----CCE--EEecCCCEEeC
Confidence 99998 44555 5445554 477 88888888876
No 326
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=75.75 E-value=9.9 Score=44.74 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=65.0
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEec-C--CCCCCchhhh-h-------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILAN-W--RGFSGGQRDL-F-------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d-~--~Gf~~G~~~e-~-------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..++++......++++.+.+..+-+|+|.- . +.|+.|.+-. . .........++..+..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 104 (261)
T 1ef8_A 26 NALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVE- 104 (261)
T ss_dssp TCCCHHHHHHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHhhCCceEEEEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 588899999999999998775577788866 3 3366554311 0 01112345678889999999999998
Q ss_pred CCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |..+++. .|+ .+|.++++++.
T Consensus 105 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 131 (261)
T 1ef8_A 105 -GSVWGGAFEMIMS----SDL--IIAASTSTFSM 131 (261)
T ss_dssp -SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred -CEEEeHhHHHHHh----CCE--EEecCCCEEeC
Confidence 54455 5555554 477 88889988876
No 327
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=75.72 E-value=2.3 Score=46.46 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=45.0
Q ss_pred eeeCCCceeEEEEccCCCEEccCCcEEEEEcccccee-eecCCCcEEEEe
Q 000086 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK 738 (2304)
Q Consensus 690 l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~-l~ap~~G~V~~i 738 (2304)
..=|.-|..+-..+.+|++|.+|+.+|-|.+=|-|.- ++||.+|+|..+
T Consensus 103 ~lvpaeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v 152 (169)
T 3d4r_A 103 ISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFM 152 (169)
T ss_dssp EEEEECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEE
T ss_pred EEEEeCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEE
Confidence 4568889999999999999999999999999999986 899999999877
No 328
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=75.64 E-value=14 Score=45.27 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-h---------------------------------
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-E--------------------------------- 2021 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-~--------------------------------- 2021 (2304)
..+++.+......++++.++. ..+-+|+|.-. +.|+.|.+-.. .
T Consensus 56 ~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (333)
T 3njd_A 56 GNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWD 135 (333)
T ss_dssp TTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCTTSTTCHHHHHHTTCSSSCCC
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccccccccccccccccccccccccccccc
Confidence 358889999999999999876 56777777554 44777643110 0
Q ss_pred -----hHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2022 -----GILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2022 -----gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
..+.....++.++..+.+|+|+.|- |...+||..+++. +|+ ++|.+++++|.-+.
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~-G~a~GgG~~Lala----cD~--rias~~a~f~~pe~ 195 (333)
T 3njd_A 136 PMVDYQMMSRFVRGFASLMHCDKPTVVKIH-GYCVAGGTDIALH----ADQ--VIAAADAKIGYPPM 195 (333)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSSSCEEEEEC-SEEETHHHHHHTT----SSE--EEECTTCEEECGGG
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCEEEEEC-CEEeHHHHHHHHh----CCE--EEECCCCeeechhh
Confidence 1122334456778899999999998 3444445555555 477 88999998877543
No 329
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=75.43 E-value=8.6 Score=45.75 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=65.6
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEec-----CC--CCCCchhhh-hh--------hHH-HHHHHHHHHHHcCCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILAN-----WR--GFSGGQRDL-FE--------GIL-QAGSTIVENLRTYKQ 2039 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d-----~~--Gf~~G~~~e-~~--------gil-k~ga~iv~al~~~~v 2039 (2304)
...++++......++++.++. ..+=+|+|.- .. .|+.|.+-. .. +.. .....++..+..+.+
T Consensus 31 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 110 (275)
T 4eml_A 31 RNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPK 110 (275)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSS
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCC
Confidence 358899999999999999876 5677888876 33 477764311 00 000 013457788899999
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+|+.|- |...+||..+++. .|+ ++|.++|++|.
T Consensus 111 PvIAav~-G~a~GgG~~lala----cD~--~ia~~~a~f~~ 144 (275)
T 4eml_A 111 VVIALVA-GYAIGGGHVLHLV----CDL--TIAADNAIFGQ 144 (275)
T ss_dssp EEEEEEC-SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred CEEEEEC-CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 9999998 3444445555555 477 88999998887
No 330
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=75.17 E-value=67 Score=38.02 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh-hh-h-------hHHHH----HHH-HHHHHHcCCCCEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-LF-E-------GILQA----GST-IVENLRTYKQPVF 2042 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~-e~-~-------gilk~----ga~-iv~al~~~~vP~i 2042 (2304)
..+.++-.....++++.+.+ ..+=+|+|.-. +.|+.|.+- +. . ..... ... ++..+..+.+|+|
T Consensus 31 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 110 (276)
T 2j5i_A 31 NAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTI 110 (276)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57889999999999998876 45666666543 348877542 11 0 00111 112 2456677889999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||..+++.+ |+ ++|.++++++.
T Consensus 111 Aav~-G~a~GgG~~lalac----D~--ria~~~a~f~~ 141 (276)
T 2j5i_A 111 AMVN-GWCFGGGFSPLVAC----DL--AICADEATFGL 141 (276)
T ss_dssp EEEC-SCEEGGGHHHHHHS----SE--EEEETTCEEEC
T ss_pred EEEC-CeeehhHHHHHHhC----CE--EEEcCCCEEeC
Confidence 9988 34455555555553 77 88888888876
No 331
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Probab=73.97 E-value=36 Score=42.04 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=64.5
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh-hh-h----------hHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LF-E----------GILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~-e~-~----------gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
..+..+-.....++++.+.. ..+=+|+|.-.. .|+.|..- +. . ...+....++..+..+.+|+|+
T Consensus 28 Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 107 (363)
T 3bpt_A 28 NALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVA 107 (363)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 58899999999999998876 467788887643 47766532 11 0 1122233567789999999999
Q ss_pred EEcCCCcCCch-hhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |-+.|| .-+++. .|+ .+|.++|+++.
T Consensus 108 av~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 137 (363)
T 3bpt_A 108 LIH--GITMGGGVGLSVH----GQF--RVATEKCLFAM 137 (363)
T ss_dssp EEC--SEEETHHHHTTTT----SSE--EEECTTCEEEC
T ss_pred EEC--CEEehHHHHHHHh----CCE--EEEcCCeEEeC
Confidence 998 555554 444443 476 78888888776
No 332
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=73.96 E-value=36 Score=40.44 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=64.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-h-----------h----HH----HHHHHHHHHHH
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-E-----------G----IL----QAGSTIVENLR 2035 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-~-----------g----il----k~ga~iv~al~ 2035 (2304)
..++.++-.....++++.+.+ ..+-+|+|.-.. .|+.|..-.. . . .. .....++.++.
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 109 (280)
T 1pjh_A 30 LNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFI 109 (280)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999876 467777776543 3776653210 0 0 00 11235677889
Q ss_pred cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecc-cCcEEEe
Q 000086 2036 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYAD-RTAKGNV 2080 (2304)
Q Consensus 2036 ~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~-p~A~~gv 2080 (2304)
.+.+|+|+.|- |...+||..+++. .|+ ++|. ++++++.
T Consensus 110 ~~~kPvIAav~-G~a~GgG~~Lala----cD~--~ia~~~~a~f~~ 148 (280)
T 1pjh_A 110 KHSKVLICCLN-GPAIGLSAALVAL----CDI--VYSINDKVYLLY 148 (280)
T ss_dssp HCCSEEEEEEC-SCEEHHHHHHHHH----SSE--EEESSTTCEEEC
T ss_pred hCCCCEEEEEC-CeeeeHHHHHHHH----CCE--EEEeCCCCEEeC
Confidence 99999999998 3444445555555 376 7888 8888876
No 333
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=73.57 E-value=3.3 Score=47.71 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=35.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCE--EEEecCcceEecChH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~--~I~~~~~~i~ltG~~ 1818 (2304)
.|+++++.|.+.++|++++.-||. +++.+++.|++..|.
T Consensus 104 ~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~ 144 (218)
T 1y7o_A 104 ADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM 144 (218)
T ss_dssp SCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC
T ss_pred CCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc
Confidence 489999999999999999999999 999999998887763
No 334
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=73.35 E-value=2.1 Score=48.28 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=24.1
Q ss_pred EEccCCCEEccCCcEEEEEccccceeeecCCCcEEE
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ 736 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~ 736 (2304)
++|++|+.|++||.||+=. +|.|..+|+|.
T Consensus 23 L~V~dG~~VkkG~~laeWD------PIitE~~G~V~ 52 (193)
T 2xha_A 23 LHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 52 (193)
T ss_dssp ESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence 5789999999999999865 77777777663
No 335
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=72.98 E-value=3.1 Score=56.11 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=56.7
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccccccccccCccee----eccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy~s~~~lGG~~i----~~~n 1844 (2304)
.|+|+.|.|.|+|||.-++..||++|+.+++.+++. |-.-|-+++|..... ..=|.|-.+ ...-
T Consensus 107 kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~-~l~ltG~~i~a~eA~~~ 185 (742)
T 3zwc_A 107 KPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVAL-DLITSGKYLSADEALRL 185 (742)
T ss_dssp SCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHH-HHHHHCCCEEHHHHHHH
T ss_pred CCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHH-HHHHcCCchhHHHHHHc
Confidence 599999999999999999999999999999876543 223344555543210 011122222 2469
Q ss_pred CceEEEecCcH--HHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDL--EGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~--~~~~~i~~~Ls 1866 (2304)
|++|.++++|. ++++.+.++.+
T Consensus 186 GLv~~vv~~d~~~~A~~~A~~ia~ 209 (742)
T 3zwc_A 186 GILDAVVKSDPVEEAIKFAQKIID 209 (742)
T ss_dssp TSCSEEESSCHHHHHHHHHHHHTT
T ss_pred CCccEecCchhhHHHHHHHHHHhc
Confidence 99999998765 34444444443
No 336
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}
Probab=72.56 E-value=22 Score=44.63 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=64.6
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh--hh--------------hhHHHHHHHHHHHHHcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD--LF--------------EGILQAGSTIVENLRTYK 2038 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~--e~--------------~gilk~ga~iv~al~~~~ 2038 (2304)
-..+..+-.....++++.+.+ ..+-+|+|.-.. .|+.|..- +. ....+....++..+..+.
T Consensus 63 ~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 142 (407)
T 3ju1_A 63 LNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYG 142 (407)
T ss_dssp TSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHCC
Confidence 358899999999999998876 467777776653 47776431 11 111222345778899999
Q ss_pred CCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2039 QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2039 vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+|+|+.|- |...+||.-+++.+ |+ .+|.++|+++.
T Consensus 143 kPvIAaVn-G~a~GgG~~Lalac----D~--ria~~~a~f~~ 177 (407)
T 3ju1_A 143 KPVLVWGD-GIVMGGGLGLMAGA----SH--KVVTETSRIAM 177 (407)
T ss_dssp SCEEEECC-SEEETHHHHHHHHC----SE--EEECTTCEEEC
T ss_pred CCEEEEEC-CccccCcchHHhcC----CE--EEEcCCCEEeC
Confidence 99999888 34444455555553 66 77788887776
No 337
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=72.25 E-value=2.1 Score=45.89 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=66.6
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccc--eeEE-EEEeccCCCCCChhhhhccEEEE-ccCCCCCCCccC
Q 000086 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKA--ILLV-AMATPEDMRINAEHIRIADQFVE-VPGGTNNNNYAN 119 (2304)
Q Consensus 48 ~~kILIan~----G~~Av~iIrsar~~Gy~v~~~~~~--i~~v-~vat~~D~~~~a~~ir~ADe~v~-vp~~~~~~sY~d 119 (2304)
.++|.|+|. |..+..+++.+++.||+++..+.. -..+ .+-++.+...-. .-.|-.+. +|. ..
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~---~~vDlavi~vp~-------~~ 82 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLK---EPVDILDVFRPP-------SA 82 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCC---SCCSEEEECSCH-------HH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCC---CCCCEEEEEeCH-------HH
Confidence 468999997 678999999999999987643332 1111 112222211101 12343333 332 12
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHH
Q 000086 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2304)
Q Consensus 120 vd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam 167 (2304)
+..+++-|.+.++.+||.-.|+. +.++.+.++++|+.++||.---+
T Consensus 83 ~~~v~~~~~~~gi~~i~~~~g~~--~~~~~~~a~~~Gir~vgpnc~g~ 128 (140)
T 1iuk_A 83 LMDHLPEVLALRPGLVWLQSGIR--HPEFEKALKEAGIPVVADRCLMV 128 (140)
T ss_dssp HTTTHHHHHHHCCSCEEECTTCC--CHHHHHHHHHTTCCEEESCCHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCcC--HHHHHHHHHHcCCEEEcCCccce
Confidence 44556666677888888776664 45688888889999999865443
No 338
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Probab=72.01 E-value=2 Score=53.32 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=34.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1816 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG 1816 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-
T Consensus 102 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe 139 (363)
T 3bpt_A 102 QKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPE 139 (363)
T ss_dssp SSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCG
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCc
Confidence 36999999999999999999999999999998877654
No 339
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=71.89 E-value=45 Score=44.96 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=67.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh-----------hhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-----------EGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~-----------~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++++.......++++.+.+ ..+-.|+|.--+ .|+.|.+- ++ ....+....++..+..+.+|+|+.
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 109 (715)
T 1wdk_A 30 NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAA 109 (715)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 47888889999999998876 467888887733 48877432 11 111234567788899999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |..++||.-+++.+ |+ .+|.+++++|.
T Consensus 110 v~-G~a~GgG~elalac----D~--ria~~~a~fgl 138 (715)
T 1wdk_A 110 IN-GIALGGGLEMCLAA----DF--RVMADSAKIGL 138 (715)
T ss_dssp EC-SCEETHHHHHHHTS----SE--EEEETTCEEEC
T ss_pred EC-CEeeHHHHHHHHHC----CE--EEEeCCCEEeC
Confidence 98 45555566666654 66 78888888765
No 340
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=71.87 E-value=1.9 Score=53.41 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=38.4
Q ss_pred EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
..|+.|+....=...+.|++. -+..|.++.+|+|..+ +++|+.|.+||+|++|+.
T Consensus 21 ~~v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 21 VTLEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp --------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 445555554444556677764 4568999999999999 999999999999999964
No 341
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=71.79 E-value=14 Score=44.59 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=73.1
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh----h-ccEEEEccCCCCCCCccCHHH
Q 000086 49 HSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR----I-ADQFVEVPGGTNNNNYANVQL 122 (2304)
Q Consensus 49 ~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir----~-ADe~v~vp~~~~~~sY~dvd~ 122 (2304)
++|||+|. |.++..+++.+.+.|++++ ++.- +...+..... + .+..-.+.+ ++.|.+.
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~---------~l~R--~~~~~~~~~~~~~~l~~~~v~~~~~-----Dl~d~~~ 74 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTY---------ILAR--PGPRSPSKAKIFKALEDKGAIIVYG-----LINEQEA 74 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEE---------EEEC--SSCCCHHHHHHHHHHHHTTCEEEEC-----CTTCHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEE---------EEEC--CCCCChhHHHHHHHHHhCCcEEEEe-----ecCCHHH
Confidence 58999996 9999999999999998874 2222 1111111111 0 111222222 4567888
Q ss_pred HHHHHHHcCCCEEEeCCCcCCC--CCchHHHHHHCC-CeEECCC------------HHHHHHhcCHHHHHHHHHHCCCCc
Q 000086 123 IVEMAEMTRVDAVWPGWGHASE--IPELPDTLSTKG-IIFLGPP------------ATSMAALGDKIGSSLIAQAANVPT 187 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG~G~~SE--n~~la~~l~~~G-I~fiGPs------------~eam~~lgDK~~sr~laq~aGVPt 187 (2304)
+.++.++.++|+|+-..+.... ...+.+++.+.| +..+-++ .........|....+.+++.|+|+
T Consensus 75 l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~e~~~~~p~~~y~~sK~~~e~~l~~~g~~~ 154 (346)
T 3i6i_A 75 MEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRVRQLVEESGIPF 154 (346)
T ss_dssp HHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECSCCSSCTTTCCCCTTHHHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEeecccCCCCCccCcCCCcchHHHHHHHHHHHHHHcCCCE
Confidence 8888888889998866553211 112445666666 4332111 112234457889999999988764
No 342
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=71.77 E-value=5 Score=42.19 Aligned_cols=109 Identities=15% Similarity=-0.005 Sum_probs=67.5
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHH
Q 000086 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQL 122 (2304)
Q Consensus 48 ~~kILIan~----G~~Av~iIrsar~~Gy~v~~~~~~i~~v-~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~ 122 (2304)
.++|.|+|. +-.+-++++.+++.||+++-.+.....+ .+-++.+...-. . .|-.+..-+. ..+..
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp---~-vDlavi~~p~------~~v~~ 73 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIE---G-VDTVTLYINP------QNQLS 73 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCT---T-CCEEEECSCH------HHHGG
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCC---C-CCEEEEEeCH------HHHHH
Confidence 478999986 4478899999999999875322221111 112222221111 1 3444332110 22556
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHH
Q 000086 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMA 168 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~ 168 (2304)
+++-|.+.++.+||-..|+. +.++.+.++++|+.++|...-.+.
T Consensus 74 ~v~e~~~~g~k~v~~~~G~~--~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 74 EYNYILSLKPKRVIFNPGTE--NEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp GHHHHHHHCCSEEEECTTCC--CHHHHHHHHHTTCEEEESCHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCC--hHHHHHHHHHcCCeEECCcCeEEe
Confidence 67777778999999888874 457889999999999975554443
No 343
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=71.14 E-value=3.2 Score=46.39 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=16.4
Q ss_pred eeCCCCccCCCCEEEEEecC
Q 000086 738 KMAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 738 i~~~G~~v~~G~~La~l~~~ 757 (2304)
.+++||.|.+||+|+++.++
T Consensus 121 ~V~~Gd~Vk~Gd~L~~fD~~ 140 (183)
T 3our_B 121 IAEEGQTVKAGDTVIEFDLA 140 (183)
T ss_dssp CSCTTCEECTTCEEEEECHH
T ss_pred EEeCcCEEcCCCEEEEECHH
Confidence 37888999999999998753
No 344
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=70.90 E-value=12 Score=43.70 Aligned_cols=93 Identities=12% Similarity=0.187 Sum_probs=63.9
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhhhhHHHH------HHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLFEGILQA------GSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~~gilk~------ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
...+.++......++++.+.+ ..+-+|+|.-. +.|+.|..-.. .... ...++..+..+.+|+|+.|- |
T Consensus 24 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~--~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 99 (243)
T 2q35_A 24 RNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEF--LIRKTRGEVEVLDLSGLILDCEIPIIAAMQ--G 99 (243)
T ss_dssp TSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHH--HHHHHTTCCCCCCCHHHHHTCCSCEEEEEC--S
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHH--HhhccchhhHHHHHHHHHHhCCCCEEEEEc--C
Confidence 358889999999999998876 46777777654 23777754211 1100 12456778899999999988 5
Q ss_pred cCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
-+.| |..+++. .|+ .+|.++++++.
T Consensus 100 ~a~GgG~~lala----cD~--ria~~~a~f~~ 125 (243)
T 2q35_A 100 HSFGGGLLLGLY----ADF--VVFSQESVYAT 125 (243)
T ss_dssp EEETHHHHHHHT----SSE--EEEESSSEEEC
T ss_pred ccccchHHHHHh----CCE--EEEeCCCEEEC
Confidence 4555 5555554 477 88899998876
No 345
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=70.72 E-value=5.8 Score=41.64 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=57.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHc-CCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTW-AYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~-Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
.++++|+|.|..|..+++.+++. ||++ +++... + ..........--+ +. .+.+.++
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~v---------vg~~d~-~--~~~~g~~i~g~pV----------~g-~~~l~~~ 60 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHP---------IAFIDD-D--RKKHKTTMQGITI----------YR-PKYLERL 60 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEE---------EEEECS-C--GGGTTCEETTEEE----------EC-GGGHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEE---------EEEEEC-C--cccCCCEecCeEE----------EC-HHHHHHH
Confidence 46899999999999999999875 5554 444431 1 1111111111111 11 3567888
Q ss_pred HHHcCCCEEEeCCCcCCC--CCchHHHHHHCCCeE-ECCCHHH
Q 000086 127 AEMTRVDAVWPGWGHASE--IPELPDTLSTKGIIF-LGPPATS 166 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SE--n~~la~~l~~~GI~f-iGPs~ea 166 (2304)
++++++|.|+...+..+. ...+.+.|.+.|+.+ +-|+...
T Consensus 61 ~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~ 103 (141)
T 3nkl_A 61 IKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDD 103 (141)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHH
T ss_pred HHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHH
Confidence 899999999876543321 123556677788876 4465543
No 346
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=70.29 E-value=16 Score=43.55 Aligned_cols=96 Identities=18% Similarity=0.101 Sum_probs=68.3
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-----------hhhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
...++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-. .....+....++..+..+.+|+|+.
T Consensus 49 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 128 (276)
T 3rrv_A 49 LNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAA 128 (276)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 358899999999999999876 46777777544 4488775321 1122334567788899999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||..+++. .|+ .+|.++++++.
T Consensus 129 v~-G~a~GgG~~Lala----cD~--ria~~~a~f~~ 157 (276)
T 3rrv_A 129 VN-GPAVGLGCSLVAL----SDI--VYIAENAYLAD 157 (276)
T ss_dssp EC-SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred EC-ceeeHHHHHHHHH----CCE--EEEeCCCEEEC
Confidence 98 3444555555655 477 88888888875
No 347
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=68.74 E-value=4.9 Score=54.17 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=56.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 103 ~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~e-A~~ 181 (715)
T 1wdk_A 103 NVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAED-ALK 181 (715)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999875542 2233444444321 00111111111 236
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+..++|..-
T Consensus 182 ~GLv~~vv~~-~~l~~~a~~~a~~ 204 (715)
T 1wdk_A 182 VSAVDAVVTA-DKLGAAALDLIKR 204 (715)
T ss_dssp TTSSSEEECG-GGHHHHHHHHHHH
T ss_pred CCCceEEeCh-HHHHHHHHHHHHH
Confidence 8999999964 4455666666543
No 348
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=68.65 E-value=3.3 Score=57.95 Aligned_cols=43 Identities=26% Similarity=0.536 Sum_probs=34.9
Q ss_pred EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCcc
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAM 745 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v 745 (2304)
++|++|+.|++||.|++-. --..+|.+..+|+|++. +-+|-++
T Consensus 1003 l~v~~g~~V~~g~~ia~wD--p~~~piise~~G~v~f~d~~~g~t~ 1046 (1407)
T 3lu0_D 1003 LAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVRFTDMIDGQTI 1046 (1407)
T ss_dssp ESSCSSCEECTTCEEEECC--SSCCCEECSSCEEEEEESCCBTTTE
T ss_pred EEEcCCCEecCCCEEEEEe--cCceeEEeccceEEEEeeeccCcee
Confidence 6899999999999999885 45778999999999876 5555544
No 349
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=67.72 E-value=47 Score=38.98 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-hhh------HHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FEG------ILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~~g------ilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
...++++...-..++++.+.+ .++=+|+|.-. +.|+.|.+-. ... ........+..+..+.+|+|+.|- |
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G 106 (260)
T 1mj3_A 28 LNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVN-G 106 (260)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEEC-S
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHHHHHHHHHhCCCCEEEEEC-C
Confidence 358889999999999998876 46677777553 3366665321 100 000011224567788999999998 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
...+||..+++. .|+ .+|.+++++|.-
T Consensus 107 ~a~GgG~~lala----cD~--ria~~~a~f~~p 133 (260)
T 1mj3_A 107 YALGGGCELAMM----CDI--IYAGEKAQFGQP 133 (260)
T ss_dssp EEETHHHHHHHH----SSE--EEEETTCEEECG
T ss_pred EEEeHHHHHHHh----CCE--EEEcCCCEEeCc
Confidence 444445555555 366 888888888763
No 350
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=66.76 E-value=1.2 Score=54.92 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=41.4
Q ss_pred EccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 702 LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 702 ~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|+.|+.-..=.....|++- -+..|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 11 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 11 EVKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EEEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 34444444444555666654 3568999999999999 9999999999999998643
No 351
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}
Probab=66.56 E-value=2.6 Score=53.08 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=34.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1816 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG 1816 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-
T Consensus 142 ~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe 179 (407)
T 3ju1_A 142 GKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPE 179 (407)
T ss_dssp SSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGG
T ss_pred CCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChH
Confidence 36999999999999999999999999999998876654
No 352
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=65.83 E-value=4 Score=46.17 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=38.8
Q ss_pred EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCC
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQA 747 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~ 747 (2304)
++|++|+.|++||.||+. .+-..+|.+..+|+|++. +-+|.++..
T Consensus 64 L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~~e 109 (190)
T 2auk_A 64 LAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTITR 109 (190)
T ss_dssp ESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTEEE
T ss_pred EEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcceEE
Confidence 589999999999999977 578889999999999998 887765543
No 353
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}
Probab=65.38 E-value=27 Score=45.28 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHHHHHHhhcc--CCCEEEEec-C-CCCCCchhh-hh--------hhHHHHHHHHHHHH----HcCCCCE
Q 000086 1979 QVWFPDSATKTAQALMDFNRE--ELPLFILAN-W-RGFSGGQRD-LF--------EGILQAGSTIVENL----RTYKQPV 2041 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d-~-~Gf~~G~~~-e~--------~gilk~ga~iv~al----~~~~vP~ 2041 (2304)
.++++.......++++.+... .+-+|+|.- . +.|+.|..- +. ....+....++.++ ..+.+|+
T Consensus 53 NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPV 132 (556)
T 2w3p_A 53 NSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKF 132 (556)
T ss_dssp TEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 578899999999999888664 577787765 2 337766531 11 11223445567777 8999999
Q ss_pred EEEEcCCCcCCchhhhhcccccCCccceeecccC--cEEEe
Q 000086 2042 FVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT--AKGNV 2080 (2304)
Q Consensus 2042 i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~--A~~gv 2080 (2304)
|+.|- |...+||..+++.+ |+ .+|.++ +++|.
T Consensus 133 IAAVn-G~AlGGGleLALAC----D~--rIAse~~~A~Fgl 166 (556)
T 2w3p_A 133 LAAVN-GACAGGGYELALAC----DE--IYLVDDRSSSVSL 166 (556)
T ss_dssp EEEEC-SEEETHHHHHHHHS----SE--EEEECSSSCEEEC
T ss_pred EEEEC-CeechhhHHHHHhC----CE--EEEcCCCCcEEec
Confidence 99998 34555566666654 66 788888 88776
No 354
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=65.30 E-value=6.7 Score=43.87 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=25.2
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
--+.|+=-..+|++||+|++||+|+++.-
T Consensus 111 V~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 111 VELKGEGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred cccCCccceEEEeCcCEEcCCCEEEEECH
Confidence 34678888899999999999999999964
No 355
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=65.09 E-value=19 Score=42.52 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-hhhHH--------HHHHHHHHHH-HcCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FEGIL--------QAGSTIVENL-RTYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~~gil--------k~ga~iv~al-~~~~vP~i~~I 2045 (2304)
...++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-. ..... .....++..+ ..+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav 109 (265)
T 3swx_A 30 RNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAV 109 (265)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCCCSSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 358899999999999998876 46777777554 4588876421 11000 0111233445 67889999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
- |...+||..+++. .|+ .+|.++++++.-
T Consensus 110 ~-G~a~GgG~~lala----cD~--~ia~~~a~f~~p 138 (265)
T 3swx_A 110 H-GKVLTLGIELALA----ADI--VIADETATFAQL 138 (265)
T ss_dssp C-SEEETHHHHHHHH----SSE--EEEETTCEEECG
T ss_pred c-CeeehHHHHHHHH----CCE--EEEcCCCEEECc
Confidence 8 3344445555555 477 888888888763
No 356
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=65.02 E-value=4.5 Score=50.85 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=41.7
Q ss_pred EccCCCEEccCCcEEEEEc-cccceeeecCCCcEEEEe-e-CCCCccCCCCEEEEEecC
Q 000086 702 LVSDGSHIDADTPYAEVEV-MKMCMPLLSPASGVLQFK-M-AEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 702 ~V~~Gd~V~~G~~l~~iEa-MKm~~~l~ap~~G~V~~i-~-~~G~~v~~G~~La~l~~~ 757 (2304)
.|+.|+....=...+.|++ -.-+..|.++.+|+|..+ + ++|+.|++||+|++|+..
T Consensus 98 ~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 98 TVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp ECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred EEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence 3444444444445566664 244678999999999999 7 999999999999999843
No 357
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=64.76 E-value=34 Score=40.50 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=62.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-C-CCCCchhh-hh--------hhHHH-HHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-R-GFSGGQRD-LF--------EGILQ-AGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~-Gf~~G~~~-e~--------~gilk-~ga~iv~al~~~~vP~i~~I 2045 (2304)
.+++++......++++.+.+ ..+-+|+|.-. + .|+.|.+- +. ..+.. ....++..+..+.+|+|+.|
T Consensus 35 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T 2uzf_A 35 NAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMV 114 (273)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEE
Confidence 58889999999999998876 46777777654 3 46655421 10 00000 12356778889999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |...+||..+++. .|+ .+|.+++++|.
T Consensus 115 ~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 142 (273)
T 2uzf_A 115 K-GYAVGGGNVLNVV----CDL--TIAADNAIFGQ 142 (273)
T ss_dssp C-EEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred C-CEEeehhHHHHHh----CCE--EEEcCCCEEEC
Confidence 8 3444445555555 366 78888888876
No 358
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=64.62 E-value=3.4 Score=48.22 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=35.7
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1817 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~ 1817 (2304)
.|+|+.+.|.|.|+|.|++..||++++.+++.+++.|.
T Consensus 80 kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv 117 (240)
T 3rst_A 80 KPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGV 117 (240)
T ss_dssp CCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCC
T ss_pred CeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccce
Confidence 59999999999999999999999999999999888874
No 359
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=63.30 E-value=20 Score=42.56 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-h-cc--EEEEccCCCCCCCccCH
Q 000086 46 KPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-I-AD--QFVEVPGGTNNNNYANV 120 (2304)
Q Consensus 46 ~~~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir-~-AD--e~v~vp~~~~~~sY~dv 120 (2304)
.|+++|||+|. |.++..+++.+.+.|++++ ++.- +....+..+. + .. +.+.. ++.|.
T Consensus 9 ~m~~~ilVtGatG~iG~~l~~~L~~~g~~V~---------~l~R--~~~~~~~~~~~l~~~~v~~v~~-------Dl~d~ 70 (318)
T 2r6j_A 9 GMKSKILIFGGTGYIGNHMVKGSLKLGHPTY---------VFTR--PNSSKTTLLDEFQSLGAIIVKG-------ELDEH 70 (318)
T ss_dssp CCCCCEEEETTTSTTHHHHHHHHHHTTCCEE---------EEEC--TTCSCHHHHHHHHHTTCEEEEC-------CTTCH
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHCCCcEE---------EEEC--CCCchhhHHHHhhcCCCEEEEe-------cCCCH
Confidence 35678999995 9999999999999998874 2222 2111111110 0 11 22222 45667
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCC--CchHHHHHHCC-Ce-EE----CCC-------HHHHHHhcCHHHHHHHHHHCCC
Q 000086 121 QLIVEMAEMTRVDAVWPGWGHASEI--PELPDTLSTKG-II-FL----GPP-------ATSMAALGDKIGSSLIAQAANV 185 (2304)
Q Consensus 121 d~Ii~iA~~~~vDaV~pG~G~~SEn--~~la~~l~~~G-I~-fi----GPs-------~eam~~lgDK~~sr~laq~aGV 185 (2304)
+.+.++.+ ++|+|+-..+..... ..+.+++.+.| +. |+ |.+ .........|.....++++.|+
T Consensus 71 ~~l~~a~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~ 148 (318)
T 2r6j_A 71 EKLVELMK--KVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANI 148 (318)
T ss_dssp HHHHHHHT--TCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCCSSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc--CCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeeccccCcccccCCCCcchhHHHHHHHHHHHHhcCC
Confidence 77777665 578887554432111 12345555555 43 32 210 1111223678888888888887
Q ss_pred Cc
Q 000086 186 PT 187 (2304)
Q Consensus 186 Pt 187 (2304)
++
T Consensus 149 ~~ 150 (318)
T 2r6j_A 149 PY 150 (318)
T ss_dssp CB
T ss_pred Ce
Confidence 64
No 360
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=62.24 E-value=1.6 Score=55.25 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=0.0
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
+.++...-...|.||..|+|.+++|++||.|..||+|++|+..
T Consensus 37 ~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 37 CEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp -------------------------------------------
T ss_pred EEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 3344444456799999999999999999999999999999854
No 361
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}
Probab=60.53 E-value=4.6 Score=52.14 Aligned_cols=85 Identities=16% Similarity=0.040 Sum_probs=53.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecC--cceEecCh------------HHHH--Hhhcccc----cccccccCcc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD--QPIILTGF------------SALN--KLLGREV----YSSHMQLGGP 1838 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~--~~i~ltG~------------~al~--~~lG~~v----y~s~~~lGG~ 1838 (2304)
..|+|+.|.|.|+|||..++..||++|+.++ +.+++.-. .-|- +.+|... .-+...+.+.
T Consensus 129 pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~ 208 (556)
T 2w3p_A 129 GLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGE 208 (556)
T ss_dssp SCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHH
T ss_pred CCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHH
Confidence 3699999999999999999999999999998 65544211 1233 3444322 1111222222
Q ss_pred eeecccCceEEEecCcHHHHHHHHHHH
Q 000086 1839 KIMATNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1839 ~i~~~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
+ ...-|++|.++++ .+..+.+.+|.
T Consensus 209 E-Al~lGLVdeVVp~-~eL~~~A~~lA 233 (556)
T 2w3p_A 209 R-AKAWRLVDEVVKP-NQFDQAIQARA 233 (556)
T ss_dssp H-HHHTTSCSEEECH-HHHHHHHHHHH
T ss_pred H-HHHCCCceEEeCh-hHHHHHHHHHH
Confidence 2 2369999999963 44444444443
No 362
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=59.93 E-value=4.9 Score=46.16 Aligned_cols=108 Identities=9% Similarity=0.054 Sum_probs=60.5
Q ss_pred hhhhcccccCCCCCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCccccccccee
Q 000086 3 EAQRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAIL 82 (2304)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~ 82 (2304)
.+|=|+.++=++ +||++.- .-....+.+++++.=|....++|+|.|.|.++..+++... . .+.+.+
T Consensus 46 ~~qiRkDls~fg-~~G~~g~------GY~V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aLa~~~~---~----~~~g~~ 111 (212)
T 3keo_A 46 SATVRRDFSYFG-ELGRRGF------GYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRF---H----DRNKMQ 111 (212)
T ss_dssp HHHHHHHHHTTG-GGTTTSS------SEEHHHHHHHHHHHTTTTSCEEEEEECCSHHHHHHTTCCC---C----TTSSEE
T ss_pred HHHHHHHHHHHh-hcCCCCC------CEEHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHhhh---c----ccCCeE
Confidence 345555554443 2444311 2245677788887777777889999999999998877631 1 112444
Q ss_pred EEEEEeccCCCCC-Chhh-hhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeC
Q 000086 83 LVAMATPEDMRIN-AEHI-RIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPG 138 (2304)
Q Consensus 83 ~v~vat~~D~~~~-a~~i-r~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG 138 (2304)
.+++.. .| +. .... .... +.| ...+.+.++++++++|.++-.
T Consensus 112 iVg~~D-~d--p~~kiG~~~i~G--vpV---------~~~~dL~~~v~~~~Id~vIIA 155 (212)
T 3keo_A 112 ISMAFD-LD--SNDLVGKTTEDG--IPV---------YGISTINDHLIDSDIETAILT 155 (212)
T ss_dssp EEEEEE-CT--TSTTTTCBCTTC--CBE---------EEGGGHHHHC-CCSCCEEEEC
T ss_pred EEEEEe-CC--chhccCceeECC--eEE---------eCHHHHHHHHHHcCCCEEEEe
Confidence 455543 12 22 1111 1111 111 124667888888899988843
No 363
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=58.85 E-value=6 Score=48.77 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=35.2
Q ss_pred EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEE----------e--------------------eCCCCccCCCCE
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQF----------K--------------------MAEGQAMQAGEL 750 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~----------i--------------------~~~G~~v~~G~~ 750 (2304)
++|++|+.|++||.||+=. +|.|..+|+|.. + +++|+.|.+||+
T Consensus 63 l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~v 136 (352)
T 2xhc_A 63 LHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGLP 136 (352)
T ss_dssp ESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTCB
T ss_pred EEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCcE
Confidence 5789999999999999865 677777776631 1 556888888888
Q ss_pred EE
Q 000086 751 IA 752 (2304)
Q Consensus 751 La 752 (2304)
||
T Consensus 137 la 138 (352)
T 2xhc_A 137 LS 138 (352)
T ss_dssp SB
T ss_pred Ee
Confidence 87
No 364
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=58.76 E-value=6.3 Score=48.59 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=49.1
Q ss_pred eeeCCCceeEE--EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCC
Q 000086 690 LVAETPCKLLR--YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 690 l~APmPGkvv~--~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~~ 759 (2304)
|++|..|-+.. ..++.|+.|++||+|+.+-- .+++||.+|.+.. .. .-.|.+|+.++.+-....
T Consensus 266 v~a~~~g~~~~~~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~-~p-~p~V~~G~~~~~i~~~~~ 331 (350)
T 2bco_A 266 IVRLHDDFDFMFDDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIV-FP-NRHVAIGQRAALMVCEVK 331 (350)
T ss_dssp EECCSSSEEESSCTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEE-SC-CTTCCTTSEEEEEEEECC
T ss_pred EEcCCCCeEEeccccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEE-ec-CCCCCCCcEEEEEEEEcc
Confidence 66777774431 44799999999999999953 7899999997644 22 689999998888765543
No 365
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=57.98 E-value=23 Score=41.73 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=66.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh--------h------hHHHHHHHHHHHHHcCCCCE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF--------E------GILQAGSTIVENLRTYKQPV 2041 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~--------~------gilk~ga~iv~al~~~~vP~ 2041 (2304)
...+.++......++++.+.. ..+-+|+|.-. +.|+.|.+-.. . ...+....++.++..+.+|+
T Consensus 32 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 111 (267)
T 3oc7_A 32 RNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPV 111 (267)
T ss_dssp TSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCE
Confidence 358899999999999998876 46777777544 33666542110 0 13445667888899999999
Q ss_pred EEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2042 FVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2042 i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+.|- |...+||..+++.+ |+ .+|.++++++.
T Consensus 112 IAav~-G~a~GgG~~lalac----D~--~ia~~~a~f~~ 143 (267)
T 3oc7_A 112 IAAID-GHVRAGGFGLVGAC----DI--AVAGPRSSFAL 143 (267)
T ss_dssp EEEEC-SEEETTHHHHHHHS----SE--EEECTTCEEEC
T ss_pred EEEEc-CeecccchHHHHHC----CE--EEEcCCCEEeC
Confidence 99998 34444555555554 66 78888888775
No 366
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=57.98 E-value=11 Score=43.32 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=33.1
Q ss_pred eEEEEEcCcccchhhhhhcccCE--EEEecCcceEecCh
Q 000086 1781 FTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGF 1817 (2304)
Q Consensus 1781 ptis~vtg~t~G~gAyl~~lgd~--~I~~~~~~i~ltG~ 1817 (2304)
|+++++.|.+..+|+|++.-||. ++|.|++.|++.-|
T Consensus 98 pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p 136 (215)
T 2f6i_A 98 DIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQP 136 (215)
T ss_dssp CEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCT
T ss_pred CEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEecc
Confidence 77888889899999999999999 99999999887665
No 367
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=56.99 E-value=16 Score=43.10 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-h--------hHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-E--------GILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-~--------gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..++++......++++.+.+ ..+=+|+|.-. +.|+.|.+-.. . ..+.. ..++..+..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAav~- 106 (265)
T 3qxz_A 29 NSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSA-SPVQPAAFELRTPVIAAVN- 106 (265)
T ss_dssp SCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCS-CCSSSCGGGSSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHH-HHHHHHHHhCCCCEEEEEC-
Confidence 58899999999999998876 46677777544 33666643110 0 00111 3445667888999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++. .|+ ++|.++++++.
T Consensus 107 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 133 (265)
T 3qxz_A 107 GHAIGIGMTLALH----ADI--RILAEEGRYAI 133 (265)
T ss_dssp SEEETHHHHHHTT----SSE--EEEETTCCEEC
T ss_pred CEEehHhHHHHHH----CCE--EEEcCCCEEEC
Confidence 3444445555554 477 88888888875
No 368
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=56.38 E-value=21 Score=41.97 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=62.4
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-hhh--------HHHHHHHHHHHH-HcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FEG--------ILQAGSTIVENL-RTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~~g--------ilk~ga~iv~al-~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|..-. ... ..+....++..+ ..+.+|+|+.|-
T Consensus 34 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~ 113 (258)
T 3lao_A 34 NAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQ 113 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58899999999999998876 46777777554 4588775411 100 011112334556 788899999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++. .|+ .+|.++++++.
T Consensus 114 -G~a~GgG~~lala----cD~--~ia~~~a~f~~ 140 (258)
T 3lao_A 114 -GTCWTAGIELMLN----ADI--AVAARGTRFAH 140 (258)
T ss_dssp -SEEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred -CEeEhHHHHHHHh----CCE--EEEcCCCEEeC
Confidence 3444445555554 477 78888888776
No 369
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=53.70 E-value=21 Score=40.06 Aligned_cols=30 Identities=13% Similarity=-0.009 Sum_probs=26.0
Q ss_pred CCccEEEEEC-chHHHHHHHHHHH-HcCCccc
Q 000086 46 KPIHSILIAN-NGMAAVKFIRSIR-TWAYETF 75 (2304)
Q Consensus 46 ~~~~kILIan-~G~~Av~iIrsar-~~Gy~v~ 75 (2304)
.|+++|||.| .|.++..+++.+. +.|++++
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~ 34 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHIT 34 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEE
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEE
Confidence 4678899999 5999999999999 8998874
No 370
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=52.86 E-value=22 Score=39.86 Aligned_cols=73 Identities=11% Similarity=0.206 Sum_probs=45.6
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 47 ~~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.++||||.| .|.++..+++.+.+.|++++ +...+.... .. ..+..-.+.+ ++.|.+.+.+
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~-~~--~~~~~~~~~~-----Dl~d~~~~~~ 63 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVT-----------AVVRHPEKI-KI--ENEHLKVKKA-----DVSSLDEVCE 63 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEE-----------EECSCGGGC-CC--CCTTEEEECC-----CTTCHHHHHH
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEE-----------EEEcCcccc-hh--ccCceEEEEe-----cCCCHHHHHH
Confidence 457999999 59999999999999998874 221111110 00 1122222222 4567788877
Q ss_pred HHHHcCCCEEEeCCC
Q 000086 126 MAEMTRVDAVWPGWG 140 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G 140 (2304)
+.+ ++|+|+-..|
T Consensus 64 ~~~--~~d~vi~~a~ 76 (227)
T 3dhn_A 64 VCK--GADAVISAFN 76 (227)
T ss_dssp HHT--TCSEEEECCC
T ss_pred Hhc--CCCEEEEeCc
Confidence 776 5899885433
No 371
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=52.83 E-value=15 Score=41.35 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=34.0
Q ss_pred ceEEEEEcCcccchhhhhhcccCE--EEEecCcceEecChH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~--~I~~~~~~i~ltG~~ 1818 (2304)
.|+++++.|.+..+|+|++.-||. ++|.+++.|++..|.
T Consensus 85 ~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~ 125 (193)
T 1yg6_A 85 PDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPL 125 (193)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCE
T ss_pred CCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEecc
Confidence 388888889999999999999998 899999998877653
No 372
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=52.62 E-value=69 Score=37.69 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=60.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-hh-----HH-HHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-EG-----IL-QAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-~g-----il-k~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
..++++-.....++++.+.+ ..+=+|+|.-. +.|+.|.+-.. .. .. .....+...+..+.+|+|+.|- |.
T Consensus 33 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~-G~ 111 (262)
T 3r9q_A 33 NAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSKPVIAAIS-GH 111 (262)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSSCEEEEEC-SE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCCCEEEEEC-Ce
Confidence 58899999999999998876 46777777543 34777643110 00 00 0001122334578899999998 34
Q ss_pred cCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
..+||..+++.+ |+ .+|.++++++.
T Consensus 112 a~GgG~~lalac----D~--ria~~~a~f~~ 136 (262)
T 3r9q_A 112 AVAGGIELALWC----DL--RVVEEDAVLGV 136 (262)
T ss_dssp EETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred eehhhhHHHHhC----CE--EEEeCCCEEec
Confidence 444455555554 77 88889988876
No 373
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=52.16 E-value=27 Score=41.29 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=66.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.+ ..+-+|+|.-.. .|+.|..-. .....+....++..+..+.+|+|+.|-
T Consensus 34 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 113 (272)
T 1hzd_A 34 NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAID 113 (272)
T ss_dssp TCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 57888889999999998876 467777776543 477665311 111223445677889999999999997
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|...+||..+++. .|+ .+|.+++++|.-+
T Consensus 114 -G~a~GgG~~lala----cD~--ria~~~a~f~~pe 142 (272)
T 1hzd_A 114 -GLALGGGLELALA----CDI--RVAASSAKMGLVE 142 (272)
T ss_dssp -EEEETHHHHHHHH----SSE--EEEETTCEEECCG
T ss_pred -ceEEecHHHHHHh----CCE--EEEcCCCEEeCch
Confidence 3344445555554 366 7888888887643
No 374
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=52.14 E-value=5.5 Score=42.03 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=27.0
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
.+.++|+|+|.|..+..+.+.+++.|++++
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~ 34 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLV 34 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEE
Confidence 456789999999999999999999999874
No 375
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=51.71 E-value=6.6 Score=48.43 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=33.1
Q ss_pred ccCCCEEccCCcEEEEEccccceeeecCCCcEEE----------------------------Ee-eCCCCccCCCCEEE
Q 000086 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ----------------------------FK-MAEGQAMQAGELIA 752 (2304)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~----------------------------~i-~~~G~~v~~G~~La 752 (2304)
|++|+.|++||+|| =...+.|..+|+|. ++ +++|+.|++|+.|.
T Consensus 125 v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~~G~~l~ 197 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 197 (352)
T ss_dssp CCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred cCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEeCCCCcc
Confidence 89999999999888 34455566666554 12 66889999999987
No 376
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=51.30 E-value=6.1 Score=42.37 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=35.2
Q ss_pred eeccccCCCCCeeeeCCCceeEEE---EccCCCEEc---cCC-cEEEEEc
Q 000086 678 TCLLQNDHDPSKLVAETPCKLLRY---LVSDGSHID---ADT-PYAEVEV 720 (2304)
Q Consensus 678 t~~~~~~~dp~~l~APmPGkvv~~---~V~~Gd~V~---~G~-~l~~iEa 720 (2304)
-+.++.....+.|.||..|+|+++ ++++|+.|+ .|| .|+.|+.
T Consensus 65 l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 65 VASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEI 114 (136)
T ss_dssp EEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEE
T ss_pred EEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEE
Confidence 344444455678999999999999 899999999 888 9999884
No 377
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=50.77 E-value=49 Score=36.04 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=24.4
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000086 49 HSILIANN-GMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 49 ~kILIan~-G~~Av~iIrsar~~Gy~v~ 75 (2304)
++|||.|. |.++..+++.+.+.|++++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~ 31 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVT 31 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEE
Confidence 58999996 9999999999999998875
No 378
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=50.61 E-value=3.3 Score=48.16 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCE-EccCCcEEEEEc
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSH-IDADTPYAEVEV 720 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~-V~~G~~l~~iEa 720 (2304)
+.-...|.||..|+|.+++|++||. |..|++|++|+.
T Consensus 43 dK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 43 DKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------
T ss_pred CCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 3334678999999999999999997 999999999973
No 379
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=50.35 E-value=20 Score=36.83 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
.+|+|+|.|..+..+++.+.+.|++++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~ 31 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIV 31 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 379999999999999999999998764
No 380
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=50.15 E-value=19 Score=40.98 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=33.5
Q ss_pred ceEEEEEcCcccchhhhhhcccC--EEEEecCcceEecCh
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGM--RCIQRLDQPIILTGF 1817 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd--~~I~~~~~~i~ltG~ 1817 (2304)
.|+++++.|.+.++|++++..|| .+++.+++.|++.-|
T Consensus 86 ~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP 125 (203)
T 3qwd_A 86 PDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQP 125 (203)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC
T ss_pred CCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecc
Confidence 48888999999999999999999 589999999888765
No 381
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=49.70 E-value=8.7 Score=40.20 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=25.7
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
+++|+|+|.|..+..+++.+.+.|++++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~ 33 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVL 33 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 4689999999999999999999999875
No 382
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=49.66 E-value=29 Score=40.72 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=46.1
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHc--CCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHH
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTW--AYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIV 124 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~--Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii 124 (2304)
.++|||.|+ |.++..+++.+.+. |++++ ++.. + ........--+++.. +..|.+.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~---------~~~r--~--~~~~~~~~~~~~~~~-------D~~d~~~~~ 61 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVI---------ASDI--R--KLNTDVVNSGPFEVV-------NALDFNQIE 61 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEE---------EEES--C--CCSCHHHHSSCEEEC-------CTTCHHHHH
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEE---------EEcC--C--CccccccCCCceEEe-------cCCCHHHHH
Confidence 468999996 99999999999998 88874 2221 1 111111111123332 445678888
Q ss_pred HHHHHcCCCEEEeC
Q 000086 125 EMAEMTRVDAVWPG 138 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG 138 (2304)
++.++.++|+|+-.
T Consensus 62 ~~~~~~~~d~vih~ 75 (312)
T 2yy7_A 62 HLVEVHKITDIYLM 75 (312)
T ss_dssp HHHHHTTCCEEEEC
T ss_pred HHHhhcCCCEEEEC
Confidence 88888889999844
No 383
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=48.56 E-value=12 Score=38.53 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=25.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
+++|+|+|.|..+..+++.+++.|++++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~ 33 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVL 33 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 4679999999999999999999998864
No 384
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=48.07 E-value=50 Score=38.89 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=25.5
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCccc
Q 000086 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 47 ~~~kILIan-~G~~Av~iIrsar~~Gy~v~ 75 (2304)
|++||||.| .|.++..+++.+.+.|++++
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 30 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPI 30 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEE
Confidence 567999999 59999999999999999874
No 385
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=47.80 E-value=51 Score=38.73 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=24.6
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~Gy~v~ 75 (2304)
+++|||+|. |.++..+++.+.+.|++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~ 32 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTY 32 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEE
Confidence 468999995 9999999999999998874
No 386
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=47.06 E-value=20 Score=41.82 Aligned_cols=56 Identities=11% Similarity=0.219 Sum_probs=43.3
Q ss_pred EEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||.|+ |.++..+++.+.+.|++++ ++ +. .+ -+..|.+.+.++.+
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~~V~-----------~~--~r---------------~~-----~D~~d~~~~~~~~~ 53 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEYDIY-----------PF--DK---------------KL-----LDITNISQVQQVVQ 53 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTEEEE-----------EE--CT---------------TT-----SCTTCHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEE-----------Ee--cc---------------cc-----cCCCCHHHHHHHHH
Confidence 9999994 9999999999999998875 22 11 11 24567788888888
Q ss_pred HcCCCEEEeC
Q 000086 129 MTRVDAVWPG 138 (2304)
Q Consensus 129 ~~~vDaV~pG 138 (2304)
..++|+|+-.
T Consensus 54 ~~~~d~vi~~ 63 (287)
T 3sc6_A 54 EIRPHIIIHC 63 (287)
T ss_dssp HHCCSEEEEC
T ss_pred hcCCCEEEEC
Confidence 8899999844
No 387
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=45.97 E-value=16 Score=46.64 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCHHHHHHHhhccCCcEEEeecCCCCCcCeEE--ECCHHHHHHHHHHHHhhCCCCcEEEEEeccc
Q 000086 217 YTTEEAIASCQVVGYPAMIKASWGGGGKGIRK--VHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279 (2304)
Q Consensus 217 ~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~--V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g 279 (2304)
...++.....+... -+||||+.|.||+|+.+ --+.++..+..+++... ...++.|++++-
T Consensus 350 ~~~~~~~~vl~~l~-~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~--p~~yIaQe~v~l 411 (474)
T 3n6x_A 350 SKADDLKYVLDNLA-ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILAN--PANYIAQPTLAL 411 (474)
T ss_dssp TSHHHHHHHHHSGG-GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHS--GGGEEEEECCCC
T ss_pred CCHHHHHHHHhchh-heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhC--CCCEEEeeccCC
Confidence 45566666665554 68999999999999987 35788888887777642 234999999954
No 388
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=45.95 E-value=37 Score=39.86 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=65.9
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCC--Chhhh----h-ccEEEEccCCCCCCCccC
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRIN--AEHIR----I-ADQFVEVPGGTNNNNYAN 119 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~--a~~ir----~-ADe~v~vp~~~~~~sY~d 119 (2304)
+++|||+|. |.++..+++.+.+.|++++ +...+.... ....+ + ....-.+.+ ++.|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~-----------~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~-----D~~d 67 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTF-----------LLVRESTASSNSEKAQLLESFKASGANIVHG-----SIDD 67 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEE-----------EECCCCCTTTTHHHHHHHHHHHTTTCEEECC-----CTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEE-----------EEECCcccccCHHHHHHHHHHHhCCCEEEEe-----ccCC
Confidence 568999995 9999999999999998874 221111110 11000 0 111112221 4566
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCC--CCCchHHHHHHCC-Ce-EE----CC--------CHHHHHHhcCHHHHHHHHHHC
Q 000086 120 VQLIVEMAEMTRVDAVWPGWGHAS--EIPELPDTLSTKG-II-FL----GP--------PATSMAALGDKIGSSLIAQAA 183 (2304)
Q Consensus 120 vd~Ii~iA~~~~vDaV~pG~G~~S--En~~la~~l~~~G-I~-fi----GP--------s~eam~~lgDK~~sr~laq~a 183 (2304)
.+.+.++.+ ++|+|+-.-+... ....+.+++.+.| +. |+ |. .+. ......|......+++.
T Consensus 68 ~~~l~~~~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~-~~~y~sK~~~e~~~~~~ 144 (308)
T 1qyc_A 68 HASLVEAVK--NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPA-KSVFEVKAKVRRAIEAE 144 (308)
T ss_dssp HHHHHHHHH--TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeecccccCccccccCCcc-hhHHHHHHHHHHHHHhc
Confidence 777777665 5788875544321 1112345565555 42 32 10 011 11225688888888888
Q ss_pred CCCc
Q 000086 184 NVPT 187 (2304)
Q Consensus 184 GVPt 187 (2304)
|+++
T Consensus 145 ~~~~ 148 (308)
T 1qyc_A 145 GIPY 148 (308)
T ss_dssp TCCB
T ss_pred CCCe
Confidence 8764
No 389
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=45.09 E-value=57 Score=38.82 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=48.7
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh-----ccEEEEccCCCCCCCccCH
Q 000086 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI-----ADQFVEVPGGTNNNNYANV 120 (2304)
Q Consensus 47 ~~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~-----ADe~v~vp~~~~~~sY~dv 120 (2304)
+.++|||.| .|.++..+++.+.+.|++++ ++..+.......... ......+.+ +..|.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~-----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----Dl~d~ 67 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVV-----------IADNLVNSKREAIARIEKITGKTPAFHET-----DVSDE 67 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EECCCSSSCTHHHHHHHHHHSCCCEEECC-----CTTCH
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEE-----------EEecCCcchHHHHHHHHhhcCCCceEEEe-----ecCCH
Confidence 346899999 59999999999999999875 221122122221111 112222222 45678
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 000086 121 QLIVEMAEMTRVDAVWPG 138 (2304)
Q Consensus 121 d~Ii~iA~~~~vDaV~pG 138 (2304)
+.+.++++..++|.|+-.
T Consensus 68 ~~~~~~~~~~~~d~vih~ 85 (341)
T 3enk_A 68 RALARIFDAHPITAAIHF 85 (341)
T ss_dssp HHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHhccCCcEEEEC
Confidence 888888888899998844
No 390
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=44.78 E-value=76 Score=37.83 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=47.5
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh-c--cEEEEccCCCCCCCccCHHHH
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI-A--DQFVEVPGGTNNNNYANVQLI 123 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~-A--De~v~vp~~~~~~sY~dvd~I 123 (2304)
++||||.|+ |.++..+++.+.+.|+.+. .+++.. .........+.. . .....+.+ +..|.+.+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~-------v~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-----Dl~d~~~~ 90 (346)
T 4egb_A 24 AMNILVTGGAGFIGSNFVHYMLQSYETYK-------IINFDA-LTYSGNLNNVKSIQDHPNYYFVKG-----EIQNGELL 90 (346)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCTTEE-------EEEEEC-CCTTCCGGGGTTTTTCTTEEEEEC-----CTTCHHHH
T ss_pred CCeEEEECCccHHHHHHHHHHHhhCCCcE-------EEEEec-cccccchhhhhhhccCCCeEEEEc-----CCCCHHHH
Confidence 468999996 9999999999999984321 122221 111111111110 0 12222222 45678889
Q ss_pred HHHHHHcCCCEEEeCCC
Q 000086 124 VEMAEMTRVDAVWPGWG 140 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G 140 (2304)
.++++..++|+|+-.-+
T Consensus 91 ~~~~~~~~~d~Vih~A~ 107 (346)
T 4egb_A 91 EHVIKERDVQVIVNFAA 107 (346)
T ss_dssp HHHHHHHTCCEEEECCC
T ss_pred HHHHhhcCCCEEEECCc
Confidence 99998888999985433
No 391
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=44.19 E-value=42 Score=39.81 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=45.2
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++|||.| .|.++..+++.+.+.|++++ ++.- ........+.---+++.. +..|.+.+.++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~---------~~~r--~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~ 62 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVV---------VVDN--LQTGHEDAITEGAKFYNG-------DLRDKAFLRDV 62 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEEC--CSSCCGGGSCTTSEEEEC-------CTTCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEE---------EEeC--CCcCchhhcCCCcEEEEC-------CCCCHHHHHHH
Confidence 46899998 59999999999999998875 2221 111111111000122322 34567788888
Q ss_pred HHHcCCCEEEeC
Q 000086 127 AEMTRVDAVWPG 138 (2304)
Q Consensus 127 A~~~~vDaV~pG 138 (2304)
.++.++|+|+-.
T Consensus 63 ~~~~~~d~vih~ 74 (330)
T 2c20_A 63 FTQENIEAVMHF 74 (330)
T ss_dssp HHHSCEEEEEEC
T ss_pred HhhcCCCEEEEC
Confidence 877789998854
No 392
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=44.03 E-value=11 Score=51.00 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~e-A~~ 180 (725)
T 2wtb_A 102 RKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEE-GHS 180 (725)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred cCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999875542 2233444445321 11111222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+..++|..
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~a~ 202 (725)
T 2wtb_A 181 LGLIDAVVPPA-ELVTTARRWAL 202 (725)
T ss_dssp HTSCSEECCTT-THHHHHHHHHH
T ss_pred CCccceEcChh-HHHHHHHHHHH
Confidence 89999999643 34455555543
No 393
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=43.29 E-value=31 Score=39.24 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.4
Q ss_pred CCccEEEEEC-chHHHHHHHHHHHHcC-Cccc
Q 000086 46 KPIHSILIAN-NGMAAVKFIRSIRTWA-YETF 75 (2304)
Q Consensus 46 ~~~~kILIan-~G~~Av~iIrsar~~G-y~v~ 75 (2304)
.++++|||.| .|.++..+++.+.+.| ++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~ 52 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQT 52 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEE
Confidence 4578999999 5999999999999999 6664
No 394
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=43.14 E-value=19 Score=44.25 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=70.6
Q ss_pred CCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHH
Q 000086 43 GGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQL 122 (2304)
Q Consensus 43 ~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~ 122 (2304)
.|++| ||||+|.|..+..+++.+.+. +++. ++.-+. ......+..-..+.+ +..|.+.
T Consensus 13 ~g~~m--kilvlGaG~vG~~~~~~L~~~-~~v~----------~~~~~~--~~~~~~~~~~~~~~~-------d~~d~~~ 70 (365)
T 3abi_A 13 EGRHM--KVLILGAGNIGRAIAWDLKDE-FDVY----------IGDVNN--ENLEKVKEFATPLKV-------DASNFDK 70 (365)
T ss_dssp ---CC--EEEEECCSHHHHHHHHHHTTT-SEEE----------EEESCH--HHHHHHTTTSEEEEC-------CTTCHHH
T ss_pred cCCcc--EEEEECCCHHHHHHHHHHhcC-CCeE----------EEEcCH--HHHHHHhccCCcEEE-------ecCCHHH
Confidence 46665 799999999999998888652 3332 222111 111111111123333 2356788
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCC
Q 000086 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~ 192 (2304)
+.+++++ +|+|+..-+.. -+..++++|.+.|..++-.+... ..=......++++|+...+-.+
T Consensus 71 l~~~~~~--~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s~~~----~~~~~l~~~a~~~g~~~i~~~G 133 (365)
T 3abi_A 71 LVEVMKE--FELVIGALPGF-LGFKSIKAAIKSKVDMVDVSFMP----ENPLELRDEAEKAQVTIVFDAG 133 (365)
T ss_dssp HHHHHTT--CSEEEECCCGG-GHHHHHHHHHHHTCEEEECCCCS----SCGGGGHHHHHHTTCEEECCCB
T ss_pred HHHHHhC--CCEEEEecCCc-ccchHHHHHHhcCcceEeeeccc----hhhhhhhhhhccCCceeeecCC
Confidence 8888764 58998665432 23567899999998887433211 0112345678899999888655
No 395
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=42.80 E-value=26 Score=39.81 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=32.9
Q ss_pred ceEEEEEcCcccchhhhhhcccCE--EEEecCcceEecCh
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGF 1817 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~--~I~~~~~~i~ltG~ 1817 (2304)
.|+.+++.|.+..+|++++.-||. +++.+++.|++.-|
T Consensus 89 ~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p 128 (201)
T 3p2l_A 89 PDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQP 128 (201)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCC
T ss_pred CCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEecc
Confidence 378888889999999999999997 89999998877765
No 396
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=42.73 E-value=51 Score=35.03 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=25.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
.++|+|+|.|..+..+++.+++.|++++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~ 46 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVV 46 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 4689999999999999999999998764
No 397
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=42.32 E-value=45 Score=39.89 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=46.8
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+++|||.| .|.++..+++.+.+.|++++ ++.- +.......+...+....+.+ +..|.+.+.++
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~---------~~~r--~~~~~~~~l~~~~~~~~~~~-----Dl~d~~~~~~~ 84 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVV---------GIDN--FATGRREHLKDHPNLTFVEG-----SIADHALVNQL 84 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEEC--CSSCCGGGSCCCTTEEEEEC-----CTTCHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEE---------EEEC--CCccchhhHhhcCCceEEEE-----eCCCHHHHHHH
Confidence 35899999 59999999999999998875 2221 11111111110012222222 44567788888
Q ss_pred HHHcCCCEEEeCCC
Q 000086 127 AEMTRVDAVWPGWG 140 (2304)
Q Consensus 127 A~~~~vDaV~pG~G 140 (2304)
++..++|+|+-.-|
T Consensus 85 ~~~~~~D~vih~A~ 98 (333)
T 2q1w_A 85 IGDLQPDAVVHTAA 98 (333)
T ss_dssp HHHHCCSEEEECCC
T ss_pred HhccCCcEEEECce
Confidence 87777999985433
No 398
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=42.14 E-value=60 Score=39.43 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=46.4
Q ss_pred CCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhh-hhc-------c-EEEEccCCCCCC
Q 000086 46 KPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHI-RIA-------D-QFVEVPGGTNNN 115 (2304)
Q Consensus 46 ~~~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~i-r~A-------D-e~v~vp~~~~~~ 115 (2304)
.|+++|||.|+ |.++..+++.+.+.|++++ ++.-..+. .....+ ... . ....+.+
T Consensus 26 ~M~k~vlVtGatG~IG~~l~~~L~~~g~~V~---------~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 90 (381)
T 1n7h_A 26 EPRKIALITGITGQDGSYLTEFLLGKGYEVH---------GLIRRSSN-FNTQRINHIYIDPHNVNKALMKLHYA----- 90 (381)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEECCCSS-CCCTTTTTTC--------CCEEEEEC-----
T ss_pred hhCCeEEEEcCCchHHHHHHHHHHHCCCEEE---------EEecCCcc-ccchhhhhhhhccccccccceEEEEC-----
Confidence 35589999996 9999999999999998875 22221110 000001 110 0 1212221
Q ss_pred CccCHHHHHHHHHHcCCCEEEeC
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPG 138 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG 138 (2304)
+..|.+.+.++++..++|+|+-.
T Consensus 91 Dl~d~~~~~~~~~~~~~d~Vih~ 113 (381)
T 1n7h_A 91 DLTDASSLRRWIDVIKPDEVYNL 113 (381)
T ss_dssp CTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCCHHHHHHHHHhcCCCEEEEC
Confidence 44567888888887789998844
No 399
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=41.60 E-value=15 Score=45.49 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=29.3
Q ss_pred eeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000086 726 PLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 726 ~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~ 756 (2304)
-|+||.+|.+...++.|+.|++||+|++|..
T Consensus 292 ~v~A~~~Gl~~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 292 KFHAPKAGMVEYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEECSSCEEEEECSCTTCCBCTTCEEEEEEC
T ss_pred EEecCCCEEEEEeCCCCCEeCCCCEEEEEEc
Confidence 5899999999999999999999999999986
No 400
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=41.29 E-value=2e+02 Score=33.53 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhhhh----HHHHHHHHHHHHHcCCCCEEEEEcCCCcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLFEG----ILQAGSTIVENLRTYKQPVFVYIPMMAEL 2051 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~~g----ilk~ga~iv~al~~~~vP~i~~I~~~ge~ 2051 (2304)
...++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-..-. ........+..+ .+.+|+|+.|- |-+
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~--G~a 104 (256)
T 3trr_A 28 RNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTNV-PPRKPIIAAVE--GFA 104 (256)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEETTSSS-CCSSCEEEEEC--SBC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhhhHHHh-cCCCCEEEEEC--Cee
Confidence 358899999999999998876 46777777544 4588875421100 000000012233 67889999998 445
Q ss_pred Cc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2052 RG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2052 ~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.| |..+++. .|+ .+|.++++++.
T Consensus 105 ~GgG~~lala----cD~--~ia~~~a~f~~ 128 (256)
T 3trr_A 105 LAGGTELVLS----CDL--VVAGRSAKFGI 128 (256)
T ss_dssp CTHHHHHHHT----SSE--EEEETTCEECC
T ss_pred eechhHHHHh----CCE--EEECCCCEEEe
Confidence 55 5555554 466 88888888765
No 401
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=41.12 E-value=18 Score=44.23 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=30.1
Q ss_pred ceeeecCCCcEEEEeeCCCCccCCCCEEEEEecC
Q 000086 724 CMPLLSPASGVLQFKMAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 724 ~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~ 757 (2304)
...|+||.+|.+...++.|+.|++||+|++|...
T Consensus 257 ~~~v~A~~~Gl~~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 257 DCYLFSEHDGLFEIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp CCCEECSSCEEEEESSCTTCEECTTCEEEEEECS
T ss_pred cEEEeCCCCeEEEEcCCCCCEEcCCCEEEEEEcC
Confidence 3457999999998889999999999999999853
No 402
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=40.83 E-value=15 Score=48.59 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=65.0
Q ss_pred chHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHh
Q 000086 147 ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASC 226 (2304)
Q Consensus 147 ~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a 226 (2304)
++.+.+.+.++.++.|....+ +.||..+..+.+-+ |--|+.. +.. ++...++
T Consensus 474 ~ll~~l~~~~v~iieP~~~~l--lsNKailalLw~l~--p~hp~LL---------------pT~-----f~~~~~l---- 525 (619)
T 2io8_A 474 RLIDVLLRPEVLVFEPLWTVI--PGNKAILPILWSLF--PHHRYLL---------------DTD-----FTVNDEL---- 525 (619)
T ss_dssp CHHHHHTCTTCEEESCGGGGT--TTSTTHHHHHHHHS--TTCTTCC---------------CEE-----SSCCHHH----
T ss_pred HHHHHHHhCCCEEECHHHHHH--hhhHHHHHHHHHhC--CCCCCCC---------------Cee-----ecCCccc----
Confidence 688888888999998888866 99999999999976 3222211 000 1111121
Q ss_pred hccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000086 227 QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2304)
Q Consensus 227 ~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~ 280 (2304)
..- ..|+||..|..|.||.+++..++. .++........+++.|+|++-+
T Consensus 526 ~~~--~yV~KPi~gReG~nV~i~~~~~~~---~~~~~~~y~~~~~IyQe~~~lp 574 (619)
T 2io8_A 526 VKT--GYAVKPIAGRCGSNIDLVSHHEEV---LDKTSGKFAEQKNIYQQLWCLP 574 (619)
T ss_dssp HHH--CEEEEETTCCTTTTCEEECTTSCE---EEECCCTTTTSCEEEEECCCCC
T ss_pred ccC--CEEEccCCCCCCCCEEEEeCCChh---HhhccccccCCCeEEEEecCCC
Confidence 111 489999999999999999762221 0111111223578889999754
No 403
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=40.07 E-value=2e+02 Score=38.99 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=67.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchh-hhhhhH--HHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQR-DLFEGI--LQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~-~e~~gi--lk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
.++.++......++++.+.+ ..+=.|+|.-. +.|+.|.+ .++... -.....+++.+..+..|+|+.|- |..++|
T Consensus 42 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~~~~~~~~~~i~~~~kPvIAai~-G~a~GG 120 (742)
T 3zwc_A 42 NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQ-GVALGG 120 (742)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSCSHHHHHHHHHHHCSSCEEEEEC-SEEETH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChhHHHHHHHHHHHhCCCCEEEEEC-ccchHH
Confidence 47889999999999999876 56777777543 34766643 111110 01345688899999999999998 445555
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccchhhh
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEI 2089 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i 2089 (2304)
|.-+++.+ |+ .+|.++|++|. ||.-..+
T Consensus 121 G~elalac----D~--ria~~~a~fg~--pev~lGl 148 (742)
T 3zwc_A 121 GLELALGC----HY--RIANAKARVGL--PEVTLGI 148 (742)
T ss_dssp HHHHHHTS----SE--EEEETTCEEEC--GGGGGTC
T ss_pred HHHHHHhc----CE--EEEcCCCEEEC--cccCccc
Confidence 65556554 66 77888888775 4443333
No 404
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=39.14 E-value=79 Score=38.29 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=47.5
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-h--------ccEEEEccCCCCCCC
Q 000086 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-I--------ADQFVEVPGGTNNNN 116 (2304)
Q Consensus 47 ~~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir-~--------ADe~v~vp~~~~~~s 116 (2304)
|+++|||.| .|.++..+++.+.+.|++++ ++.-..+. .....+. + ......+.+ +
T Consensus 23 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~---------~~~r~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~-----D 87 (375)
T 1t2a_A 23 MRNVALITGITGQDGSYLAEFLLEKGYEVH---------GIVRRSSS-FNTGRIEHLYKNPQAHIEGNMKLHYG-----D 87 (375)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEECCCSS-CCCTTTGGGC---------CEEEEEC-----C
T ss_pred cCcEEEEECCCchHHHHHHHHHHHCCCEEE---------EEECCccc-cchhhHHHHhhhhccccCCCceEEEc-----c
Confidence 558999999 59999999999999998874 22221110 0001111 1 011222222 4
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCC
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGWG 140 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~G 140 (2304)
..|.+.+.++++..++|+|+-.-|
T Consensus 88 l~d~~~~~~~~~~~~~d~vih~A~ 111 (375)
T 1t2a_A 88 LTDSTCLVKIINEVKPTEIYNLGA 111 (375)
T ss_dssp TTCHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCHHHHHHHHHhcCCCEEEECCC
Confidence 556788888888778999985433
No 405
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=38.36 E-value=64 Score=38.54 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=42.8
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 47 PIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 47 ~~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
..++|||.|+ |.++..+++.+.+.|++++ ++.. . ..... -+++.. +..|.+.+.+
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~---------~~~r--~--~~~~~----~~~~~~-------Dl~d~~~~~~ 73 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQGRTVR---------GFDL--R--PSGTG----GEEVVG-------SLEDGQALSD 73 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCEE---------EEES--S--CCSSC----CSEEES-------CTTCHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCEEE---------EEeC--C--CCCCC----ccEEec-------CcCCHHHHHH
Confidence 3467999996 9999999999999999875 2221 1 11100 112222 4466777777
Q ss_pred HHHHcCCCEEEeCCC
Q 000086 126 MAEMTRVDAVWPGWG 140 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G 140 (2304)
+++ ++|+|+-.-+
T Consensus 74 ~~~--~~d~vih~A~ 86 (347)
T 4id9_A 74 AIM--GVSAVLHLGA 86 (347)
T ss_dssp HHT--TCSEEEECCC
T ss_pred HHh--CCCEEEECCc
Confidence 766 7899885433
No 406
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=37.99 E-value=53 Score=39.18 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=46.0
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 49 HSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 49 ~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
++|||.|. |.++..+++.+.+.|++++ ++.- +................+.+ +..|.+.+.+++
T Consensus 21 ~~vlVTGasG~iG~~l~~~L~~~g~~V~---------~~~r--~~~~~~~~~~~l~~v~~~~~-----Dl~d~~~~~~~~ 84 (330)
T 2pzm_A 21 MRILITGGAGCLGSNLIEHWLPQGHEIL---------VIDN--FATGKREVLPPVAGLSVIEG-----SVTDAGLLERAF 84 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHGGGTCEEE---------EEEC--CSSSCGGGSCSCTTEEEEEC-----CTTCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE---------EEEC--CCccchhhhhccCCceEEEe-----eCCCHHHHHHHH
Confidence 47999995 9999999999999998874 2222 11111100000011222222 345677788888
Q ss_pred HHcCCCEEEeCCC
Q 000086 128 EMTRVDAVWPGWG 140 (2304)
Q Consensus 128 ~~~~vDaV~pG~G 140 (2304)
++.++|+|+-.-|
T Consensus 85 ~~~~~D~vih~A~ 97 (330)
T 2pzm_A 85 DSFKPTHVVHSAA 97 (330)
T ss_dssp HHHCCSEEEECCC
T ss_pred hhcCCCEEEECCc
Confidence 7778999985544
No 407
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=37.10 E-value=22 Score=41.03 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=24.7
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
++|||+|+|..|.+.++.+.+.|.++.
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~Vt 58 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAIT 58 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 589999999999999999999998763
No 408
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=36.33 E-value=38 Score=43.52 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.1
Q ss_pred CccEEEEECchHHHHH-HHHHHHHcCCccc
Q 000086 47 PIHSILIANNGMAAVK-FIRSIRTWAYETF 75 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~-iIrsar~~Gy~v~ 75 (2304)
.++||+|+|-|.+++. +.+-+++.|++|.
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~ 50 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQIS 50 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEE
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEE
Confidence 4689999999888885 7999999999986
No 409
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=35.64 E-value=46 Score=38.87 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=26.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
|..+|+|+|+|.+++.+...+++.|+++.
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~ 42 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARYMLKTL 42 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CccCEEEECccHHHHHHHHHHHHCCCcEE
Confidence 45799999999999999999999998864
No 410
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=35.58 E-value=38 Score=40.37 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=33.5
Q ss_pred ceEEEEEcCcccchhhhhhcccCE--EEEecCcceEecCh
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGF 1817 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~--~I~~~~~~i~ltG~ 1817 (2304)
.|+++++.|.+..+|+|++.-||. ++|.+++.|++..|
T Consensus 141 ~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP 180 (277)
T 1tg6_A 141 NPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP 180 (277)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCC
T ss_pred CCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecc
Confidence 378888888899999999999998 89999999888776
No 411
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=35.09 E-value=56 Score=39.14 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=32.0
Q ss_pred hhhHHHHHHhcCCCCCccEEEEEC-chHHHHHHHHHHHHcCCccc
Q 000086 32 MSEVDEFCRSLGGKKPIHSILIAN-NGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 32 ~~~~~~~~~~~~g~~~~~kILIan-~G~~Av~iIrsar~~Gy~v~ 75 (2304)
+++++++..... .+.++|||.| .|.++..+++.+.+.|++++
T Consensus 11 ~~~~~~~~~~~~--~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 53 (351)
T 3ruf_A 11 MSRYEEITQQLI--FSPKTWLITGVAGFIGSNLLEKLLKLNQVVI 53 (351)
T ss_dssp CHHHHHHHHHHH--HSCCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhhHHhhCC--CCCCeEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 456666655432 2347999999 59999999999999998875
No 412
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=35.05 E-value=93 Score=36.82 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=46.6
Q ss_pred CCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh---ccEEEEccCCCCCCCccCHH
Q 000086 46 KPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI---ADQFVEVPGGTNNNNYANVQ 121 (2304)
Q Consensus 46 ~~~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~---ADe~v~vp~~~~~~sY~dvd 121 (2304)
.+.+||||.|+ |.++..+++.+.+.|++++ ++.-..+ ......+.. .+....+.+ +..|.+
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~---------~~~r~~~-~~~~~~~~~~~~~~~~~~~~~-----Dl~d~~ 76 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVH---------GLVARRS-SDTRWRLRELGIEGDIQYEDG-----DMADAC 76 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEECCCS-SCCCHHHHHTTCGGGEEEEEC-----CTTCHH
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEE---------EEeCCCc-cccccchhhccccCceEEEEC-----CCCCHH
Confidence 45788999995 9999999999999998874 2222111 111111111 112222222 445678
Q ss_pred HHHHHHHHcCCCEEEeC
Q 000086 122 LIVEMAEMTRVDAVWPG 138 (2304)
Q Consensus 122 ~Ii~iA~~~~vDaV~pG 138 (2304)
.+.++++..++|+|+-.
T Consensus 77 ~~~~~~~~~~~d~Vih~ 93 (335)
T 1rpn_A 77 SVQRAVIKAQPQEVYNL 93 (335)
T ss_dssp HHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 88888887789999854
No 413
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=35.02 E-value=1e+02 Score=36.42 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=66.5
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCC-CCC-Chhhh----h-cc--EEEEccCCCCCCC
Q 000086 47 PIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDM-RIN-AEHIR----I-AD--QFVEVPGGTNNNN 116 (2304)
Q Consensus 47 ~~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~-~~~-a~~ir----~-AD--e~v~vp~~~~~~s 116 (2304)
++++|||.|. |.++..+++.+.+.|++++ ++.- +. ... ..... + .. +.+.. +
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~---------~~~R--~~~~~~~~~~~~~l~~~~~~~v~~v~~-------D 64 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTF---------IYAR--PLTPDSTPSSVQLREEFRSMGVTIIEG-------E 64 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEE---------EEEC--CCCTTCCHHHHHHHHHHHHTTCEEEEC-------C
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEE---------EEEC--CcccccChHHHHHHHHhhcCCcEEEEe-------c
Confidence 3568999995 9999999999999998774 2221 11 000 00000 0 11 22322 4
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCC--CCCchHHHHHHCC-Ce-EE----CC-------CHHHHHHhcCHHHHHHHHH
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGWGHAS--EIPELPDTLSTKG-II-FL----GP-------PATSMAALGDKIGSSLIAQ 181 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~G~~S--En~~la~~l~~~G-I~-fi----GP-------s~eam~~lgDK~~sr~laq 181 (2304)
+.|.+.+.++++ ++|+|+-.-+... ....+.+++.+.| +. |+ |. ..........|.....+++
T Consensus 65 ~~d~~~l~~a~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~ 142 (321)
T 3c1o_A 65 MEEHEKMVSVLK--QVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIE 142 (321)
T ss_dssp TTCHHHHHHHHT--TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCSSCGGGCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHc--CCCEEEECCCccchhhHHHHHHHHHHhCCccEEeccccccCccccccCCCcchHHHHHHHHHHHHH
Confidence 566777777765 4788885544321 1112445666666 43 33 21 0111112266888888888
Q ss_pred HCCCCc
Q 000086 182 AANVPT 187 (2304)
Q Consensus 182 ~aGVPt 187 (2304)
+.|+++
T Consensus 143 ~~~~~~ 148 (321)
T 3c1o_A 143 AAALPY 148 (321)
T ss_dssp HHTCCB
T ss_pred HcCCCe
Confidence 888764
No 414
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=35.01 E-value=80 Score=37.62 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=25.5
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCccc
Q 000086 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 47 ~~~kILIan-~G~~Av~iIrsar~~Gy~v~ 75 (2304)
|.++|||.| .|.++..+++.+.+.|++++
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 30 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPV 30 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence 457999998 59999999999999998875
No 415
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=34.51 E-value=1e+02 Score=35.89 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=64.8
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCC-CCCC--hhh----hh-cc--EEEEccCCCCCCC
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDM-RINA--EHI----RI-AD--QFVEVPGGTNNNN 116 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~-~~~a--~~i----r~-AD--e~v~vp~~~~~~s 116 (2304)
+++|||+|. |.++..+++.+.+.|++++ ++.- +. .... ... .+ .. +.+.. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~---------~~~R--~~~~~~~~~~~~~~~~~l~~~~v~~v~~-------D 63 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTY---------ALVR--KTITAANPETKEELIDNYQSLGVILLEG-------D 63 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEE---------EEEC--CSCCSSCHHHHHHHHHHHHHTTCEEEEC-------C
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEE---------EEEC--CCcccCChHHHHHHHHHHHhCCCEEEEe-------C
Confidence 467999995 9999999999999998774 2221 11 0000 100 00 01 22222 4
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCCC--CCchHHHHHHCC-Ce-EE----CC--------CHHHHHHhcCHHHHHHHH
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGWGHASE--IPELPDTLSTKG-II-FL----GP--------PATSMAALGDKIGSSLIA 180 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~G~~SE--n~~la~~l~~~G-I~-fi----GP--------s~eam~~lgDK~~sr~la 180 (2304)
+.|.+.+.++++ ++|+|+-.-|.... ...+.+++.+.| +. |+ |. .+. ......|......+
T Consensus 64 ~~d~~~l~~~~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~-~~~y~sK~~~e~~~ 140 (307)
T 2gas_A 64 INDHETLVKAIK--QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHDAVEPV-RQVFEEKASIRRVI 140 (307)
T ss_dssp TTCHHHHHHHHT--TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHh--CCCEEEECCcccccccHHHHHHHHHhcCCceEEeecccccCcccccCCCcc-hhHHHHHHHHHHHH
Confidence 556677766665 57888755443211 112345555555 43 32 21 111 11225688888888
Q ss_pred HHCCCCc
Q 000086 181 QAANVPT 187 (2304)
Q Consensus 181 q~aGVPt 187 (2304)
++.|+++
T Consensus 141 ~~~~i~~ 147 (307)
T 2gas_A 141 EAEGVPY 147 (307)
T ss_dssp HHHTCCB
T ss_pred HHcCCCe
Confidence 8888774
No 416
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=34.27 E-value=49 Score=41.39 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=69.0
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCC---cccccccceeEEEEEeccCCCCCChhhhhcc----------EEEEccCCCCC
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAY---ETFGTEKAILLVAMATPEDMRINAEHIRIAD----------QFVEVPGGTNN 114 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy---~v~~~~~~i~~v~vat~~D~~~~a~~ir~AD----------e~v~vp~~~~~ 114 (2304)
|+||||+|.|.++..+++.+.+.|- ++ +++.. +.. ..-..++ ..+.+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V----------~v~~r-~~~---~~~~la~~l~~~~~~~~~~~~~------ 60 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHI----------TLASR-TLS---KCQEIAQSIKAKGYGEIDITTV------ 60 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEE----------EEEES-CHH---HHHHHHHHHHHTTCCCCEEEEC------
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEE----------EEEEC-CHH---HHHHHHHHhhhhcCCceEEEEe------
Confidence 4699999999999999999998872 33 22221 111 1111221 12222
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEEC----CCHHHH-HHhcCHHHHHHHHHHCCCCcCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLG----PPATSM-AALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiG----Ps~eam-~~lgDK~~sr~laq~aGVPtpp 189 (2304)
+..|.+.+.+++++.++|+|+-.-|... ...+.+.|.+.|..++- .++... .....-....+.++++|+.+..
T Consensus 61 -D~~d~~~l~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~ 138 (405)
T 4ina_A 61 -DADSIEELVALINEVKPQIVLNIALPYQ-DLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL 138 (405)
T ss_dssp -CTTCHHHHHHHHHHHCCSEEEECSCGGG-HHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred -cCCCHHHHHHHHHhhCCCEEEECCCccc-ChHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence 2345678888888878999996544322 23456777777777661 111000 0000012455667778887666
Q ss_pred CCC
Q 000086 190 WSG 192 (2304)
Q Consensus 190 ~s~ 192 (2304)
..+
T Consensus 139 g~G 141 (405)
T 4ina_A 139 GSG 141 (405)
T ss_dssp CCB
T ss_pred cCC
Confidence 443
No 417
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=34.16 E-value=90 Score=38.05 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=25.5
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000086 47 PIHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 47 ~~~kILIan~-G~~Av~iIrsar~~Gy~v~ 75 (2304)
.+++|||.|. |.++..+++.+.+.|++++
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 57 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVI 57 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEE
Confidence 3578999996 9999999999999998874
No 418
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=33.87 E-value=82 Score=38.04 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHc-CCccc
Q 000086 48 IHSILIAN-NGMAAVKFIRSIRTW-AYETF 75 (2304)
Q Consensus 48 ~~kILIan-~G~~Av~iIrsar~~-Gy~v~ 75 (2304)
+++|||.| .|.++..+++.+.+. |++++
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~ 53 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVF 53 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEE
Confidence 47999999 599999999999998 88875
No 419
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=33.81 E-value=72 Score=37.53 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=46.0
Q ss_pred CCCccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHH
Q 000086 45 KKPIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLI 123 (2304)
Q Consensus 45 ~~~~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~I 123 (2304)
+...++|||.| .|.++..+++.+.+.|++++ ++.- +... .. + --+++.. +..|.+.+
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~---------~~~r--~~~~-~~-l--~~~~~~~-------Dl~d~~~~ 66 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVF---------GTSR--NNEA-KL-P--NVEMISL-------DIMDSQRV 66 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEES--CTTC-CC-T--TEEEEEC-------CTTCHHHH
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCEEE---------EEec--CCcc-cc-c--eeeEEEC-------CCCCHHHH
Confidence 34567899999 49999999999999998875 2222 1111 11 1 1122222 34567888
Q ss_pred HHHHHHcCCCEEEeCCC
Q 000086 124 VEMAEMTRVDAVWPGWG 140 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G 140 (2304)
.++.+..++|+|+-.-|
T Consensus 67 ~~~~~~~~~d~vih~A~ 83 (321)
T 2pk3_A 67 KKVISDIKPDYIFHLAA 83 (321)
T ss_dssp HHHHHHHCCSEEEECCS
T ss_pred HHHHHhcCCCEEEEcCc
Confidence 88888778999985433
No 420
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=32.40 E-value=61 Score=39.61 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=22.7
Q ss_pred CccEEEEECchH-----HHHHHHHHHHHcCCccc
Q 000086 47 PIHSILIANNGM-----AAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 47 ~~~kILIan~G~-----~Av~iIrsar~~Gy~v~ 75 (2304)
|.+||||+++|- -|+.+++.+++.|+++.
T Consensus 1 M~~~i~i~~GGTgGHi~palala~~L~~~g~~V~ 34 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFPALACAREFQARGYAVH 34 (365)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 568999999764 37889999999999874
No 421
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=32.30 E-value=50 Score=37.00 Aligned_cols=56 Identities=11% Similarity=-0.059 Sum_probs=36.9
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
.+.|+|+..|+|+..- | -+++|+--.-...+.+-- ..+ |++||.|.+||+|+.+..
T Consensus 48 gtpV~A~~~G~V~~~~---------G-~~V~I~H~~g~~t~Y~HL----~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 48 TYSVVAAHAGTVRVLS---------R-CQVRVTHPSGWATNYYHM----DQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCEEECSSSEEEEEEE---------T-TEEEEECTTSEEEEEESE----ESCCCCTTCEECTTCEEEEECS
T ss_pred CCEEEeccCEEEEEEC---------C-eEEEEEECCcEEEEEEcC----CccccCCCCEEcCCCEEEeecC
Confidence 3689999999998863 3 244554322222222221 234 899999999999999865
No 422
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=31.53 E-value=1.8e+02 Score=34.07 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=57.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhhhhHH----HHHHHH-HHHHHcCCCCEEEEEcCCCcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLFEGIL----QAGSTI-VENLRTYKQPVFVYIPMMAEL 2051 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~~gil----k~ga~i-v~al~~~~vP~i~~I~~~ge~ 2051 (2304)
..+..+......++++.+.. ..+-+|+|.-. +.|+.|.+-..-.-. .....+ +..+.. .+|+|+.|- |-+
T Consensus 37 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~-~kPvIAav~--G~a 113 (265)
T 3qxi_A 37 NSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFTERPP-AKPLIAAVE--GYA 113 (265)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETTTEETTTTSCC-SSCEEEEEC--SEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhhhhhhHHHhhC-CCCEEEEEC--Cce
Confidence 58899999999999998876 46777777543 458877542110000 000001 222222 689999998 545
Q ss_pred Cc-hhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2052 RG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2052 ~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
.| |..+++. .|+ .+|.++++++.-+
T Consensus 114 ~GgG~~lala----cD~--ria~~~a~f~~pe 139 (265)
T 3qxi_A 114 LAGGTELALA----TDL--IVAARDSAFGIPE 139 (265)
T ss_dssp ETHHHHHHHH----SSE--EEEETTCEEECGG
T ss_pred eHHHHHHHHh----CCE--EEEcCCCEEECcc
Confidence 55 5555555 477 8888888887533
No 423
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=31.04 E-value=1.1e+02 Score=36.18 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=45.1
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCC----hhhhhccEEEEccCCCCCCCccCHHH
Q 000086 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINA----EHIRIADQFVEVPGGTNNNNYANVQL 122 (2304)
Q Consensus 48 ~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a----~~ir~ADe~v~vp~~~~~~sY~dvd~ 122 (2304)
|++|||.| .|.++..+++.+.+.|++++ ++.. ...... ..+........+.+ +..|.+.
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~---------~~~r--~~~~~~~~~~~~l~~~~~~~~~~~-----Dl~d~~~ 64 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLI---------VFDN--LSRKGATDNLHWLSSLGNFEFVHG-----DIRNKND 64 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEEC--CCSTTHHHHHHHHHTTCCCEEEEC-----CTTCHHH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEE---------EEeC--CCccCchhhhhhhccCCceEEEEc-----CCCCHHH
Confidence 46899999 59999999999999998875 2211 100111 01111111112211 4456778
Q ss_pred HHHHHHHcCCCEEEeC
Q 000086 123 IVEMAEMTRVDAVWPG 138 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG 138 (2304)
+.++.+..++|+|+-.
T Consensus 65 ~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 65 VTRLITKYMPDSCFHL 80 (347)
T ss_dssp HHHHHHHHCCSEEEEC
T ss_pred HHHHHhccCCCEEEEC
Confidence 8888777779999854
No 424
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=30.63 E-value=84 Score=37.72 Aligned_cols=74 Identities=9% Similarity=0.079 Sum_probs=46.0
Q ss_pred cEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh---ccEEEEccCCCCCCCccCHHHHH
Q 000086 49 HSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI---ADQFVEVPGGTNNNNYANVQLIV 124 (2304)
Q Consensus 49 ~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~---ADe~v~vp~~~~~~sY~dvd~Ii 124 (2304)
++|||.| .|.++..+++.+.+.|++++ ++.- +.......... .+....+.+ +..|.+.+.
T Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~---------~~~r--~~~~~~~~~~~~~~~~~~~~~~~-----Dl~d~~~~~ 73 (357)
T 1rkx_A 10 KRVFVTGHTGFKGGWLSLWLQTMGATVK---------GYSL--TAPTVPSLFETARVADGMQSEIG-----DIRDQNKLL 73 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEES--SCSSSSCHHHHTTTTTTSEEEEC-----CTTCHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEE---------EEeC--CCcccchhhHhhccCCceEEEEc-----cccCHHHHH
Confidence 5899999 59999999999999998874 2222 11111111111 111111211 445678888
Q ss_pred HHHHHcCCCEEEeC
Q 000086 125 EMAEMTRVDAVWPG 138 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG 138 (2304)
++++..++|+|+-.
T Consensus 74 ~~~~~~~~d~vih~ 87 (357)
T 1rkx_A 74 ESIREFQPEIVFHM 87 (357)
T ss_dssp HHHHHHCCSEEEEC
T ss_pred HHHHhcCCCEEEEC
Confidence 88887789999854
No 425
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=30.11 E-value=47 Score=39.16 Aligned_cols=28 Identities=7% Similarity=0.233 Sum_probs=25.0
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~Gy~v~ 75 (2304)
.++|||.|+ |.++..+++.+.+.|++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 30 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAV 30 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEE
Confidence 468999996 9999999999999998875
No 426
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=29.44 E-value=56 Score=44.13 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh-----------hhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-----------EGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~-----------~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.+++++......++++.+.+ ..+=.|+|.--+ .|+.|.+- +. ....+....++..+..+.+|+|+.
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 108 (725)
T 2wtb_A 29 NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAA 108 (725)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCTTCCEEEEEESSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEE
Confidence 47888889999999998876 467788887633 48877432 11 111222333445566778999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |..++||.-+++.+ |+ .+|.+++++|.
T Consensus 109 v~-G~a~GgG~elalac----D~--ria~~~a~fgl 137 (725)
T 2wtb_A 109 ID-GLALGGGLELAMAC----HA--RISAPAAQLGL 137 (725)
T ss_dssp EC-SEEETHHHHHHHHS----SE--EEECTTCEEEC
T ss_pred EC-CccCcccHHHHHhC----CE--EEEcCCCEEeC
Confidence 98 34555565556654 66 77888888765
No 427
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=29.31 E-value=1.3e+02 Score=35.42 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=47.5
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCC-CChhhhhc---cEEEEccCCCCCCCccCHHHH
Q 000086 49 HSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRI-NAEHIRIA---DQFVEVPGGTNNNNYANVQLI 123 (2304)
Q Consensus 49 ~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~-~a~~ir~A---De~v~vp~~~~~~sY~dvd~I 123 (2304)
++|||.|+ |.++..+++.+.+.|++++ ++..+... ....+... .....+.+ +..|.+.+
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~-----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----Dl~d~~~~ 67 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLLEKGYEVY-----------GADRRSGEFASWRLKELGIENDVKIIHM-----DLLEFSNI 67 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EECSCCSTTTTHHHHHTTCTTTEEECCC-----CTTCHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE-----------EEECCCcccccccHhhccccCceeEEEC-----CCCCHHHH
Confidence 58999996 9999999999999998875 22111111 11111111 12223322 45677888
Q ss_pred HHHHHHcCCCEEEeCCC
Q 000086 124 VEMAEMTRVDAVWPGWG 140 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G 140 (2304)
.++++..++|+|+-.-|
T Consensus 68 ~~~~~~~~~d~vih~A~ 84 (345)
T 2z1m_A 68 IRTIEKVQPDEVYNLAA 84 (345)
T ss_dssp HHHHHHHCCSEEEECCC
T ss_pred HHHHHhcCCCEEEECCC
Confidence 88888778999885433
No 428
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=29.00 E-value=68 Score=33.95 Aligned_cols=27 Identities=7% Similarity=0.199 Sum_probs=24.8
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
++|+|+|.|..+..+++.+.+.|++++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~ 30 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVT 30 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 579999999999999999999998874
No 429
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=28.84 E-value=48 Score=38.22 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=44.7
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 47 PIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 47 ~~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
|+++|||.|. |.++..+++.+.+.|++++ ++..+..... ......+.+ +..|.+.+.+
T Consensus 1 M~~~ilVtGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~-----~~~~~~~~~-----Dl~d~~~~~~ 59 (267)
T 3ay3_A 1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVR-----------LSDIVDLGAA-----EAHEEIVAC-----DLADAQAVHD 59 (267)
T ss_dssp CEEEEEEESTTSHHHHHHGGGGGGTEEEEE-----------ECCSSCCCCC-----CTTEEECCC-----CTTCHHHHHH
T ss_pred CCceEEEECCCCHHHHHHHHHHHhCCCEEE-----------EEeCCCcccc-----CCCccEEEc-----cCCCHHHHHH
Confidence 5689999996 9999999999999887764 2211111100 111222322 4456677777
Q ss_pred HHHHcCCCEEEeCCCc
Q 000086 126 MAEMTRVDAVWPGWGH 141 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~ 141 (2304)
+++ ++|+|+-.-|.
T Consensus 60 ~~~--~~d~vi~~a~~ 73 (267)
T 3ay3_A 60 LVK--DCDGIIHLGGV 73 (267)
T ss_dssp HHT--TCSEEEECCSC
T ss_pred HHc--CCCEEEECCcC
Confidence 765 58998855443
No 430
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=28.63 E-value=60 Score=39.61 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=53.2
Q ss_pred HhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhh-h-hccEEEEccCCCCCCCc
Q 000086 40 RSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHI-R-IADQFVEVPGGTNNNNY 117 (2304)
Q Consensus 40 ~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~i-r-~ADe~v~vp~~~~~~sY 117 (2304)
.+.++-+.-++|||.|.|..+.-+++.++.+|.+++ ++..+.. ..... + -||+.+. . ...++
T Consensus 182 ~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi-----------~~~~~~~-~~~~~~~lGa~~vi~-~---~~~~~ 245 (363)
T 3uog_A 182 VEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVI-----------VTSSSRE-KLDRAFALGADHGIN-R---LEEDW 245 (363)
T ss_dssp TTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEE-----------EEESCHH-HHHHHHHHTCSEEEE-T---TTSCH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EEecCch-hHHHHHHcCCCEEEc-C---CcccH
Confidence 356667777899999999999999999999998774 2211111 11111 1 2566554 1 11233
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGWG 140 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~G 140 (2304)
.+.+.++....++|.|+-..|
T Consensus 246 --~~~v~~~~~g~g~D~vid~~g 266 (363)
T 3uog_A 246 --VERVYALTGDRGADHILEIAG 266 (363)
T ss_dssp --HHHHHHHHTTCCEEEEEEETT
T ss_pred --HHHHHHHhCCCCceEEEECCC
Confidence 456666666668999996655
No 431
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=28.29 E-value=1.2e+02 Score=36.07 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.8
Q ss_pred EEEEEC-chHHHHHHHHHHHHcCCccc
Q 000086 50 SILIAN-NGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 50 kILIan-~G~~Av~iIrsar~~Gy~v~ 75 (2304)
||||.| .|.++..+++.+.+.|++++
T Consensus 15 ~ilVtGatG~iG~~l~~~L~~~g~~V~ 41 (342)
T 2x4g_A 15 KYAVLGATGLLGHHAARAIRAAGHDLV 41 (342)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 899999 49999999999999998874
No 432
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=27.21 E-value=49 Score=37.22 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=24.0
Q ss_pred EEEEECchHHHHHHHHHHHHcCCccc
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
||+|+|.|..+..+++.+.+.|++++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~ 27 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVV 27 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 69999999999999999999998874
No 433
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=27.09 E-value=73 Score=37.28 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=24.5
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcC-Cccc
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWA-YETF 75 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~G-y~v~ 75 (2304)
.++|||.|. |.++..+++.+.+.| ++++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~ 34 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVR 34 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEE
Confidence 478999996 999999999999988 7764
No 434
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=26.66 E-value=1.2e+02 Score=36.29 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=46.0
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCC-CChhh-hh-------ccEEEEccCCCCCCCc
Q 000086 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRI-NAEHI-RI-------ADQFVEVPGGTNNNNY 117 (2304)
Q Consensus 48 ~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~-~a~~i-r~-------ADe~v~vp~~~~~~sY 117 (2304)
+++|||.| .|.++..+++.+.+.|++++ ++..+... ....+ .+ ......+.+ +.
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----Dl 64 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVH-----------GIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG-----DL 64 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EECC---------------------CCEEECCC-----CS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-----------EEECCCcccchHHHHHHhhccccCCCceEEEEC-----CC
Confidence 46899999 49999999999999998875 22111100 00001 01 012222322 45
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGWG 140 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~G 140 (2304)
.|.+.+.++++..++|+|+-.-|
T Consensus 65 ~d~~~~~~~~~~~~~d~vih~A~ 87 (372)
T 1db3_A 65 SDTSNLTRILREVQPDEVYNLGA 87 (372)
T ss_dssp SCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCHHHHHHHHHhcCCCEEEECCc
Confidence 67788888888778999885433
No 435
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=26.41 E-value=1.1e+02 Score=36.65 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=24.8
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~Gy~v~ 75 (2304)
+++|||.|+ |.++..+++.+.+.|++++
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 55 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVV 55 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 368999996 9999999999999998874
No 436
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=25.92 E-value=1.7e+02 Score=33.53 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=50.8
Q ss_pred ccEEEEE--CchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccE----EEEccCCCCCCCccC--
Q 000086 48 IHSILIA--NNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ----FVEVPGGTNNNNYAN-- 119 (2304)
Q Consensus 48 ~~kILIa--n~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe----~v~vp~~~~~~sY~d-- 119 (2304)
|+||+|. |+|..+..+++++.+-++. ++.++|.+..+ ++.....|.+ ++.+++ .+|.+
T Consensus 1 m~rI~vl~SG~g~~~~~~l~~l~~~~~~-------~~i~~Vvs~~~---~~~~~~~A~~~gIp~~~~~~----~~~~~r~ 66 (216)
T 2ywr_A 1 MLKIGVLVSGRGSNLQAIIDAIESGKVN-------ASIELVISDNP---KAYAIERCKKHNVECKVIQR----KEFPSKK 66 (216)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTTSSC-------EEEEEEEESCT---TCHHHHHHHHHTCCEEECCG----GGSSSHH
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHhCCCC-------CeEEEEEeCCC---ChHHHHHHHHcCCCEEEeCc----ccccchh
Confidence 3588888 9999999999999876541 23456666432 3444555553 333322 23333
Q ss_pred --HHHHHHHHHHcCCCEEEe-CCCc
Q 000086 120 --VQLIVEMAEMTRVDAVWP-GWGH 141 (2304)
Q Consensus 120 --vd~Ii~iA~~~~vDaV~p-G~G~ 141 (2304)
-+.+++..++.++|.|+. ||+.
T Consensus 67 ~~~~~~~~~l~~~~~Dliv~a~y~~ 91 (216)
T 2ywr_A 67 EFEERMALELKKKGVELVVLAGFMR 91 (216)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred hhhHHHHHHHHhcCCCEEEEeCchh
Confidence 356888889999998663 5553
No 437
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=25.78 E-value=1.7e+02 Score=34.09 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=47.5
Q ss_pred EEEEECc-hHHHHHHHHHHHHc-CCcccccccceeEEEEEeccCCCCCCh-hhh-hccEEEEccCCCCCCCccCHHHHHH
Q 000086 50 SILIANN-GMAAVKFIRSIRTW-AYETFGTEKAILLVAMATPEDMRINAE-HIR-IADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 50 kILIan~-G~~Av~iIrsar~~-Gy~v~~~~~~i~~v~vat~~D~~~~a~-~ir-~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
||+|+|. |..+..+++.+.+. ++++ ++++... .+.. ... -+|-.+.... . ......+.
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~el---------va~~d~~---~dl~~~~~~~~DvvIDfT~---p---~a~~~~~~ 63 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTL---------SAELDAG---DPLSLLTDGNTEVVIDFTH---P---DVVMGNLE 63 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEE---------EEEECTT---CCTHHHHHTTCCEEEECSC---T---TTHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEE---------EEEEccC---CCHHHHhccCCcEEEEccC---h---HHHHHHHH
Confidence 7999994 99999999998865 6655 3333221 1211 222 4564444321 1 12567778
Q ss_pred HHHHcCCCEEEeCCCcCCC
Q 000086 126 MAEMTRVDAVWPGWGHASE 144 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SE 144 (2304)
.|.+++++.|+-.-|+..+
T Consensus 64 ~a~~~g~~~VigTTG~~~e 82 (245)
T 1p9l_A 64 FLIDNGIHAVVGTTGFTAE 82 (245)
T ss_dssp HHHHTTCEEEECCCCCCHH
T ss_pred HHHHcCCCEEEcCCCCCHH
Confidence 8888899988855554443
No 438
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=25.69 E-value=1.9e+02 Score=32.46 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=25.0
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccc
Q 000086 49 HSILIANN-GMAAVKFIRSIRTWAYETFG 76 (2304)
Q Consensus 49 ~kILIan~-G~~Av~iIrsar~~Gy~v~~ 76 (2304)
++|||.|. |.++..+++.+.+.|++++.
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~ 50 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKGHEPVA 50 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHhCCCeEEE
Confidence 47999996 99999999999999998863
No 439
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=25.65 E-value=18 Score=45.49 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=24.5
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
.+|+|+|.|..+..+.+.+++.|++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vv 31 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMV 31 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 369999999999999999999998874
No 440
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=25.60 E-value=1.4e+02 Score=35.00 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=59.2
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh-hh-------H-HHHHHHHHHHHHcCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-EG-------I-LQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~-~g-------i-lk~ga~iv~al~~~~vP~i~~I 2045 (2304)
...++++......++++.+.. ..+-+|+|.-.. .|+.|.+-.. .. . ..+....+ ....+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kPvIAav 108 (267)
T 3r9t_A 30 RNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGY-VRHFIDKPTIAAV 108 (267)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGT-TTCCCSSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHH-HHHhCCCCEEEEE
Confidence 458899999999999998876 467788886654 4777753210 00 0 00000111 1226789999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |..+++.+ |+ ++|.++++++.
T Consensus 109 ~--G~a~GgG~~lalac----D~--ria~~~a~f~~ 136 (267)
T 3r9t_A 109 N--GTALGGGTELALAS----DL--VVADERAQFGL 136 (267)
T ss_dssp C--SEECTHHHHHHHHS----SE--EEEETTCEECC
T ss_pred C--CEEEhHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 8 54455 55555553 66 78888888765
No 441
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=24.63 E-value=32 Score=39.42 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=23.2
Q ss_pred hHHHHHHhcCCCCCccEEEEECchHHHHHHHHH
Q 000086 34 EVDEFCRSLGGKKPIHSILIANNGMAAVKFIRS 66 (2304)
Q Consensus 34 ~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrs 66 (2304)
.+.+++++.-|.....||+|+|.|.++..+++.
T Consensus 66 ~L~~~~~~~lg~~~~~rV~IIGaG~~G~~la~~ 98 (211)
T 2dt5_A 66 VLKRELRHILGLNRKWGLCIVGMGRLGSALADY 98 (211)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECCSHHHHHHHHC
T ss_pred HHHHHHHHHhCcCCCCEEEEECccHHHHHHHHh
Confidence 444554444344445799999999999988874
No 442
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=24.30 E-value=2e+02 Score=34.24 Aligned_cols=27 Identities=4% Similarity=0.009 Sum_probs=23.2
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcc
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWAYET 74 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~Gy~v 74 (2304)
..||+|.|. |..+...++.+++.|++.
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~ 34 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKM 34 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeE
Confidence 368999997 999999999999988764
No 443
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.22 E-value=1.7e+02 Score=37.23 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 35 ~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
+.++-+..+| +|++|.+.+..+..+.+.++++|.+++
T Consensus 303 ~~d~~~~l~g----krv~i~~~~~~~~~l~~~L~elG~~vv 339 (458)
T 1mio_B 303 MIDAQQYLQG----KKVALLGDPDEIIALSKFIIELGAIPK 339 (458)
T ss_dssp HHHTHHHHTT----CEEEEEECHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHcCC----CEEEEEcCchHHHHHHHHHHHCCCEEE
Confidence 3344444555 589999999999999999999998874
No 444
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=24.14 E-value=66 Score=41.77 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=26.0
Q ss_pred hhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 33 SEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 33 ~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
..++.+.+..|.....++++|+|.|..+..+++.+.+.|++++
T Consensus 333 ~~l~~~~~~~~~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~ 375 (565)
T 4gx0_A 333 SQLAALEYLIGEAPEDELIFIIGHGRIGCAAAAFLDRKPVPFI 375 (565)
T ss_dssp --------------CCCCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 3445555555554333899999999999999999999998874
No 445
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=23.91 E-value=43 Score=38.86 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=26.2
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
.|++||||.|.|.++..+++.+.+.|++++
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~ 32 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGWRII 32 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTCEEE
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCCEEE
Confidence 467899999999999999999999999875
No 446
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=23.88 E-value=75 Score=38.39 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=25.0
Q ss_pred ccEEEEECchHHHHH-HHHHHHHcCCccc
Q 000086 48 IHSILIANNGMAAVK-FIRSIRTWAYETF 75 (2304)
Q Consensus 48 ~~kILIan~G~~Av~-iIrsar~~Gy~v~ 75 (2304)
++||+|+|-|.+++. +.+-+++.|++|.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~ 32 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVS 32 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEE
Confidence 579999999999996 7889999999985
No 447
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.54 E-value=19 Score=38.00 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=17.3
Q ss_pred cCCCcccchhhhhcccCccCCCCc
Q 000086 1540 CCNIRSFFFSSFNLSISDCKSCSC 1563 (2304)
Q Consensus 1540 c~~~~~~~~~~~~~~~~~~~~~~~ 1563 (2304)
||+|++.|.-+- -++.+||+|+|
T Consensus 30 CP~C~seytYeD-g~l~vCPeC~h 52 (138)
T 2akl_A 30 CPQCNSEYTYED-GALLVCPECAH 52 (138)
T ss_dssp CTTTCCCCCEEC-SSSEEETTTTE
T ss_pred CCCCCCcceEec-CCeEECCcccc
Confidence 999987776443 25789999954
No 448
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=23.44 E-value=43 Score=36.73 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=25.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
--.|+|+|.|++++.+...+.+.|+++.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~ 29 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVH 29 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEE
Confidence 3469999999999999999999999874
No 449
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=23.32 E-value=1e+02 Score=35.76 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=43.9
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 47 PIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 47 ~~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.-+||||.|+ |.++..+++.+.+.|++++ ++ +.. . -+..|.+.+.+
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~-----------~~--~r~---------------~-----~Dl~d~~~~~~ 57 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVI-----------PT--DVQ---------------D-----LDITNVLAVNK 57 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEE-----------EE--CTT---------------T-----CCTTCHHHHHH
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEE-----------ec--cCc---------------c-----CCCCCHHHHHH
Confidence 3479999995 9999999999999998774 22 211 0 13456777888
Q ss_pred HHHHcCCCEEEeCCC
Q 000086 126 MAEMTRVDAVWPGWG 140 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G 140 (2304)
+.+..++|+|+-.-|
T Consensus 58 ~~~~~~~d~vih~A~ 72 (292)
T 1vl0_A 58 FFNEKKPNVVINCAA 72 (292)
T ss_dssp HHHHHCCSEEEECCC
T ss_pred HHHhcCCCEEEECCc
Confidence 777778999985433
No 450
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=23.27 E-value=1.1e+02 Score=35.78 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=43.8
Q ss_pred cEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 49 HSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 49 ~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
+||||.| .|.++..+++.+.+.|++++ ++ +... .-+..|.+.+.++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~L~~~g~~v~-----------~~--~r~~-------------------~~D~~d~~~~~~~~ 51 (321)
T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQRGDVEL-----------VL--RTRD-------------------ELNLLDSRAVHDFF 51 (321)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEE-----------EC--CCTT-------------------TCCTTCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEE-----------EE--ecCc-------------------cCCccCHHHHHHHH
Confidence 5899999 49999999999999998764 22 1110 11445678888888
Q ss_pred HHcCCCEEEeCCC
Q 000086 128 EMTRVDAVWPGWG 140 (2304)
Q Consensus 128 ~~~~vDaV~pG~G 140 (2304)
+..++|+|+-.-+
T Consensus 52 ~~~~~d~vih~a~ 64 (321)
T 1e6u_A 52 ASERIDQVYLAAA 64 (321)
T ss_dssp HHHCCSEEEECCC
T ss_pred HhcCCCEEEEcCe
Confidence 8778999985433
No 451
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=23.05 E-value=72 Score=40.58 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=24.8
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
++|||+|.|..|.+.++.+.+.|.++.
T Consensus 13 ~~vlVvGgG~va~~k~~~L~~~ga~V~ 39 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLLEAGARLT 39 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEE
Confidence 689999999999999999999998763
No 452
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=22.93 E-value=81 Score=36.66 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=26.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
.+.+|+|+|+|.+++.+...+++.|+++.
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~ 31 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNV 31 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeE
Confidence 35799999999999999999999998874
No 453
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=22.85 E-value=2.7e+02 Score=35.44 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=50.3
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh-ccEEEEccCCCC
Q 000086 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI-ADQFVEVPGGTN 113 (2304)
Q Consensus 35 ~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~-ADe~v~vp~~~~ 113 (2304)
+.++-...+| ||+.|.+.+..+..+.+.++++|.+++ .+.++... . .+-+. .++.+ +
T Consensus 304 ~~d~~~~l~G----krv~i~~~~~~~~~l~~~L~elGm~vv---------~~~~~~~~-~--~~~~~~~~~v~-~----- 361 (458)
T 3pdi_B 304 MLDTHFMLSS----ARTAIAADPDLLLGFDALLRSMGAHTV---------AAVVPARA-A--ALVDSPLPSVR-V----- 361 (458)
T ss_dssp HHHHHHHHTT----CEEEEECCHHHHHHHHHHHHTTTCEEE---------EEEESSCC-S--CCTTTTSSCEE-E-----
T ss_pred HHHHHHhcCC----CEEEEECCcHHHHHHHHHHHHCCCEEE---------EEEECCCC-h--hhhhCccCcEE-e-----
Confidence 3444445555 579999999999999999999998874 34443311 1 11111 23222 2
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeC
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPG 138 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG 138 (2304)
.|...+.+++++.++|.++.+
T Consensus 362 ----~D~~~le~~i~~~~pDllig~ 382 (458)
T 3pdi_B 362 ----GDLEDLEHAARAGQAQLVIGN 382 (458)
T ss_dssp ----SHHHHHHHHHHHHTCSEEEEC
T ss_pred ----CCHHHHHHHHHhcCCCEEEEC
Confidence 245677788888999999854
No 454
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Probab=22.83 E-value=83 Score=35.53 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=26.2
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
+.+++|||.|.|..|..++..+++.+|+++
T Consensus 10 ~~~k~v~IiGAGg~g~~v~~~l~~~~~~~v 39 (220)
T 4ea9_A 10 LAIGGVVIIGGGGHAKVVIESLRACGETVA 39 (220)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred cCCCCEEEEcCCHHHHHHHHHHHhCCCEEE
Confidence 456789999999999999999999888864
No 455
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=22.83 E-value=93 Score=36.45 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=38.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|+|+..|+|+.+--..| .--+++|+--.-...+.+. +..+ |++|+.|.+||+|+.+...
T Consensus 95 pV~A~~~G~V~~~g~~~~-----~G~~ViI~Hg~G~~t~Y~H----L~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 95 DVSASLSGTVVKAEKDPV-----LGYVVEVEHADGLSTVYQS----LSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEECSSCEEEEEEEEETT-----TEEEEEEECSTTEEEEEEE----ESEESCCTTCEECTTCEEEECBCC
T ss_pred eEEeCcCeEEEEEEecCC-----CceEEEEEeCCCEEEEEec----CCccccCCCCEECCCCEEEEeCCc
Confidence 799999999988754322 2234555543322233222 2234 8999999999999988654
No 456
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=22.68 E-value=76 Score=40.57 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=66.6
Q ss_pred CccEEEEECchHHHHHHHHHHHHc-CCcccccccceeEEEEEeccCCCCCChhhhhccE----EEEccCCCCCCCccCHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTW-AYETFGTEKAILLVAMATPEDMRINAEHIRIADQ----FVEVPGGTNNNNYANVQ 121 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~-Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe----~v~vp~~~~~~sY~dvd 121 (2304)
.+++|||+|.|.+|..+++.+.+. |+++. ++.. +. ...-.+++. .+.+ ++.|.+
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~----------v~~R-~~---~ka~~la~~~~~~~~~~-------D~~d~~ 80 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDINVT----------VACR-TL---ANAQALAKPSGSKAISL-------DVTDDS 80 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEEEE----------EEES-SH---HHHHHHHGGGTCEEEEC-------CTTCHH
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCeEE----------EEEC-CH---HHHHHHHHhcCCcEEEE-------ecCCHH
Confidence 457999999999999999999987 55432 2221 11 111122221 2222 334556
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCC
Q 000086 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2304)
Q Consensus 122 ~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~ 192 (2304)
.+.++++ ++|+|+-.-+... .+.+.+.+.+.|..++-+.... -+.......++++|+.+....+
T Consensus 81 ~l~~~l~--~~DvVIn~tp~~~-~~~v~~a~l~~g~~vvd~~~~~----p~~~~Ll~~Ak~aGv~~i~g~G 144 (467)
T 2axq_A 81 ALDKVLA--DNDVVISLIPYTF-HPNVVKSAIRTKTDVVTSSYIS----PALRELEPEIVKAGITVMNEIG 144 (467)
T ss_dssp HHHHHHH--TSSEEEECSCGGG-HHHHHHHHHHHTCEEEECSCCC----HHHHHHHHHHHHHTCEEECSCB
T ss_pred HHHHHHc--CCCEEEECCchhh-hHHHHHHHHhcCCEEEEeecCC----HHHHHHHHHHHHcCCEEEecCC
Confidence 6666554 6899996654322 1235666666777666443200 0013444677888988766443
No 457
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=22.36 E-value=1.2e+02 Score=35.53 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=43.3
Q ss_pred EEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||.|+ |.++..+++.+.+.|++++ ++......... ...+....+.+ +..|.+.+.++.+
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~-----------~~~r~~~~~~~--~~~~~~~~~~~-----Dl~~~~~~~~~~~ 63 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARGLEVA-----------VLDNLATGKRE--NVPKGVPFFRV-----DLRDKEGVERAFR 63 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEE-----------EECCCSSCCGG--GSCTTCCEECC-----CTTCHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEE-----------EEECCCcCchh--hcccCeEEEEC-----CCCCHHHHHHHHH
Confidence 7999995 9999999999999998875 22110001111 11111111111 3456777777777
Q ss_pred HcCCCEEEeC
Q 000086 129 MTRVDAVWPG 138 (2304)
Q Consensus 129 ~~~vDaV~pG 138 (2304)
+.++|.|+-.
T Consensus 64 ~~~~d~vi~~ 73 (311)
T 2p5y_A 64 EFRPTHVSHQ 73 (311)
T ss_dssp HHCCSEEEEC
T ss_pred hcCCCEEEEC
Confidence 7789998854
No 458
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.91 E-value=88 Score=40.13 Aligned_cols=85 Identities=14% Similarity=0.326 Sum_probs=51.8
Q ss_pred hHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh--hccEEEEccCC
Q 000086 34 EVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR--IADQFVEVPGG 111 (2304)
Q Consensus 34 ~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir--~ADe~v~vp~~ 111 (2304)
.+.+|-+...| ||+.|.+.+..+..+++.++++|.+++ .+.++.-...+...++ +.+..+.+..
T Consensus 322 al~~~~~~l~G----Krv~i~~~~~~~~~l~~~L~ElGmevv---------~~gt~~~~~~d~~~~~~~l~~~~~i~~d- 387 (483)
T 3pdi_A 322 ALEPWRARLEG----KRVLLYTGGVKSWSVVSALQDLGMKVV---------ATGTKKSTEEDKARIRELMGDDVKMLDE- 387 (483)
T ss_dssp HHHHHHHHHTT----CEEEEECSSSCHHHHHHHHHHHTCEEE---------EECBSSSCHHHHHHHHHHSCSSCCBCCS-
T ss_pred HHHHHHHHhcC----CEEEEECCCchHHHHHHHHHHCCCEEE---------EEecCCCCHHHHHHHHHhcCCCCEEEeC-
Confidence 45556566666 579999988888889999999999874 2333211000001111 1122222211
Q ss_pred CCCCCccCHHHHHHHHHHcCCCEEEeC
Q 000086 112 TNNNNYANVQLIVEMAEMTRVDAVWPG 138 (2304)
Q Consensus 112 ~~~~sY~dvd~Ii~iA~~~~vDaV~pG 138 (2304)
.|...+.+.+++.++|.++.+
T Consensus 388 ------~d~~el~~~i~~~~pDL~ig~ 408 (483)
T 3pdi_A 388 ------GNARVLLKTVDEYQADILIAG 408 (483)
T ss_dssp ------CSHHHHHHHHHHTTCSEEECC
T ss_pred ------CCHHHHHHHHHhcCCCEEEEC
Confidence 357888899999999999854
No 459
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=21.71 E-value=55 Score=37.77 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=25.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCccc
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~ 75 (2304)
|+.+|+|+|+|.+++.+...+++.|+++.
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~ 29 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNIL 29 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEE
Confidence 45799999999999999999999998763
No 460
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=21.62 E-value=94 Score=37.81 Aligned_cols=27 Identities=4% Similarity=0.337 Sum_probs=24.2
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcC-Cccc
Q 000086 49 HSILIANN-GMAAVKFIRSIRTWA-YETF 75 (2304)
Q Consensus 49 ~kILIan~-G~~Av~iIrsar~~G-y~v~ 75 (2304)
++|||.|+ |.++..+++.+.+.| ++++
T Consensus 33 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~ 61 (377)
T 2q1s_A 33 TNVMVVGGAGFVGSNLVKRLLELGVNQVH 61 (377)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCceEE
Confidence 58999995 999999999999999 8874
No 461
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=21.57 E-value=1.5e+02 Score=34.19 Aligned_cols=71 Identities=13% Similarity=0.013 Sum_probs=44.2
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+++|||.| .|.++..+++.+.+.|++++ +... +..... ......+.. +..|.+.+.++
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~---------~~~r--~~~~~~-----~~~~~~~~~-----Dl~d~~~~~~~ 61 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAEILR---------LADL--SPLDPA-----GPNEECVQC-----DLADANAVNAM 61 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEEEEE---------EEES--SCCCCC-----CTTEEEEEC-----CTTCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCEEE---------EEec--CCcccc-----CCCCEEEEc-----CCCCHHHHHHH
Confidence 47899999 58999999999999988764 2222 111111 111222221 34567777777
Q ss_pred HHHcCCCEEEeCCCc
Q 000086 127 AEMTRVDAVWPGWGH 141 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~ 141 (2304)
++ ++|+|+-.-|.
T Consensus 62 ~~--~~D~vi~~Ag~ 74 (267)
T 3rft_A 62 VA--GCDGIVHLGGI 74 (267)
T ss_dssp HT--TCSEEEECCSC
T ss_pred Hc--CCCEEEECCCC
Confidence 76 68998855444
No 462
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=21.53 E-value=1.4e+02 Score=34.59 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=22.9
Q ss_pred EEEEEC-chHHHHHHHHHHHHc-CCccc
Q 000086 50 SILIAN-NGMAAVKFIRSIRTW-AYETF 75 (2304)
Q Consensus 50 kILIan-~G~~Av~iIrsar~~-Gy~v~ 75 (2304)
||||.| .|.++..+++.+.+. |++++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~ 29 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFH 29 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEE
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEE
Confidence 599999 499999999999988 88874
No 463
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=21.40 E-value=81 Score=38.75 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=29.3
Q ss_pred ceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000086 724 CMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 724 ~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~ 756 (2304)
..-++||.+|.++..++.|+.|++||+|+++..
T Consensus 267 ~~~v~A~~~G~~~~~~~~g~~V~~G~~La~i~d 299 (354)
T 3cdx_A 267 DAYVMAPRTGLFEPTHYVGEEVRTGETAGWIHF 299 (354)
T ss_dssp GGEEECSSCEEEEESCCTTCEECTTSEEEEEEC
T ss_pred cEEEECCCCEEEEEeCCCCCEeCCCCEEEEEEC
Confidence 345789999988888999999999999999985
No 464
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=21.16 E-value=6e+02 Score=29.65 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhh-hhhHHHHHHHHHhcccch
Q 000086 908 ESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQY-KKDLLKVVDIVLSHQGVK 963 (2304)
Q Consensus 908 ~~~~~~~~~~ll~~y~~ve~~f~~~~~~~~i~~lr~~~-~~~~~~v~~~~~sh~~~~ 963 (2304)
++.|...+..|+.++..+|.=|.. .++....++..+ .+++..++.-...|.+=.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~gf~~--~~~~a~~~~~~~~~~~~~~la~~L~~~~~de 86 (240)
T 3l9t_A 32 RGSMKQYVARLEKDFSLIEHGFKE--EEQRALTDYKSNDGEYIKKLAFLAYQSDVYQ 86 (240)
T ss_dssp --CHHHHHHHHHHHHTC-----CH--HHHHHHHHHHHSCHHHHHHHHHHHHTCSSHH
T ss_pred hhHHHHHHHHHHHHHHHhhcccHH--HHHHHHHHHHhCCHHHHHHHHHHHHhCcchH
Confidence 457888899999999999988865 455555555553 345556666666665533
No 465
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=21.08 E-value=60 Score=38.82 Aligned_cols=63 Identities=10% Similarity=0.059 Sum_probs=37.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
.+.|+|+..|+|+..- +.-.-| -+++|+--.-...+.+-- ..+ |++||.|.+||+|+.+....
T Consensus 190 GtpV~A~~~G~V~~~g----~~~~~G-~~ViI~Hg~G~~t~Y~HL----~~i~V~~G~~V~~Gq~IG~vG~tG 253 (282)
T 2hsi_A 190 GTPIKAPAAGKVILIG----DYFFNG-KTVFVDHGQGFISMFCHL----SKIDVKLGQQVPRGGVLGKVGATG 253 (282)
T ss_dssp TCEEECSSCEEEEEEE----EETTTE-EEEEEEEETTEEEEEEEE----SEECSCTTCEECTTCEEEECCCTT
T ss_pred CCeEEeccCeEEEEEE----EcCCCC-CEEEEEeCCcEEEEEECC----CccccCCcCEECCCCEEEEECCCC
Confidence 5679999999997752 111112 234444322222222221 234 89999999999999886543
No 466
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.74 E-value=32 Score=38.11 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=18.8
Q ss_pred CccccCCCcccchhhhhcccCccCCCCcchhHH
Q 000086 1536 LASTCCNIRSFFFSSFNLSISDCKSCSCEKCYL 1568 (2304)
Q Consensus 1536 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1568 (2304)
.|. |++|+-++..+ .-.+||.|++++++.
T Consensus 138 ~~~-C~~CG~i~~~~---~p~~CP~Cg~~~~~F 166 (170)
T 3pwf_A 138 VYI-CPICGYTAVDE---APEYCPVCGAPKEKF 166 (170)
T ss_dssp EEE-CTTTCCEEESC---CCSBCTTTCCBGGGC
T ss_pred eeE-eCCCCCeeCCC---CCCCCCCCCCCHHHc
Confidence 565 88888666532 234788888766553
No 467
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=20.72 E-value=1.8e+02 Score=35.33 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=49.8
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCC-CCChhhhhccE----EEEccCCCCCCCccCHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMR-INAEHIRIADQ----FVEVPGGTNNNNYANVQLI 123 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~-~~a~~ir~ADe----~v~vp~~~~~~sY~dvd~I 123 (2304)
.||+++|....++.+++++.+.|+++ ++|+|..|.. ...+....|.+ ++..+.....+.+ .+.+
T Consensus 23 mrIvf~G~~~fa~~~L~~L~~~~~~i---------~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~--~~~~ 91 (329)
T 2bw0_A 23 MKIAVIGQSLFGQEVYCHLRKEGHEV---------VGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQA--LPDV 91 (329)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEE---------EEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEE--CHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeE---------EEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccc--cHHH
Confidence 48999999999999999999887665 5667755532 22344444443 2222111000111 2567
Q ss_pred HHHHHHcCCCEEE-eCCCc
Q 000086 124 VEMAEMTRVDAVW-PGWGH 141 (2304)
Q Consensus 124 i~iA~~~~vDaV~-pG~G~ 141 (2304)
++..+..++|.++ ++||.
T Consensus 92 ~~~l~~~~~Dliv~a~y~~ 110 (329)
T 2bw0_A 92 VAKYQALGAELNVLPFCSQ 110 (329)
T ss_dssp HHHHHTTCCSEEEESSCSS
T ss_pred HHHHHhcCCCEEEEeehhh
Confidence 7778888899755 56653
No 468
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=20.70 E-value=55 Score=40.62 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=24.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCc
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYE 73 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~ 73 (2304)
|+++|+|+|+|.+++.+.+.+++.|++
T Consensus 1 M~~~vvIIGaG~AGl~aA~~L~~~g~~ 27 (410)
T 3ef6_A 1 MATHVAIIGNGVGGFTTAQALRAEGFE 27 (410)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEcccHHHHHHHHHHHccCcC
Confidence 457999999999999999999999987
No 469
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=20.65 E-value=99 Score=36.36 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=39.5
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCC
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|+..|+|+..--..| +--+++|+--.-...+.+--+.. ..|++||.|.+||+|+.+....
T Consensus 140 ~pV~A~~~G~V~~~g~~~~-----~G~~V~I~H~~G~~t~Y~HL~~~--~~V~~G~~V~~Gq~IG~vG~tG 203 (252)
T 3nyy_A 140 YPVVSMTDGVVTEKGWLEK-----GGWRIGITAPTGAYFYYAHLDSY--AELEKGDPVKAGDLLGYMGDSG 203 (252)
T ss_dssp SEEECSSCEEEEEEEEETT-----TEEEEEEECTTSCEEEEEEESEE--CSCCTTCEECTTCEEEECBCCC
T ss_pred ceEEeccCEEEEEEEecCC-----CCCEEEEEeCCcEEEEEeeCCCC--CcCCCCCEECCCCEEEEECCCC
Confidence 3799999999987643322 23345555332222333322221 1289999999999999986543
No 470
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=20.46 E-value=1.1e+02 Score=36.39 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.6
Q ss_pred cEEEEEC-chHHHHHHHHHHHHc
Q 000086 49 HSILIAN-NGMAAVKFIRSIRTW 70 (2304)
Q Consensus 49 ~kILIan-~G~~Av~iIrsar~~ 70 (2304)
-||.|+| .|..+..+++.+.+.
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~ 30 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAA 30 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCHHHHHHHHHHHhC
Confidence 5899999 899999999998864
No 471
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=20.25 E-value=1.3e+02 Score=35.96 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=53.2
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan~-G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|.||.|+|. |.++...++++++.+.++ ++++... .... ..+..+ | ...-|.+.+.+++.
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~l---------vav~d~~---~~~~--~~~~~~---~---~~~~~~~~~~ll~~ 62 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVL---------VASLDPA---TNVG--LVDSFF---P---EAEFFTEPEAFEAY 62 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEE---------EEEECSS---CCCG--GGGGTC---T---TCEEESCHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEE---------EEEEcCC---HHHH--HHHhhC---C---CCceeCCHHHHHHH
Confidence 468999998 678889999999876443 5555432 2221 222221 1 23457778888876
Q ss_pred H-----HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEE
Q 000086 127 A-----EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL 160 (2304)
Q Consensus 127 A-----~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fi 160 (2304)
+ ...++|+|+..--.. ...+++..+.++|..++
T Consensus 63 ~~~l~~~~~~vD~V~I~tP~~-~H~~~~~~al~aGkhVl 100 (312)
T 3o9z_A 63 LEDLRDRGEGVDYLSIASPNH-LHYPQIRMALRLGANAL 100 (312)
T ss_dssp HHHHHHTTCCCSEEEECSCGG-GHHHHHHHHHHTTCEEE
T ss_pred hhhhcccCCCCcEEEECCCch-hhHHHHHHHHHCCCeEE
Confidence 6 457899998552111 11223344444555554
No 472
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=20.24 E-value=3.1e+02 Score=33.98 Aligned_cols=64 Identities=11% Similarity=-0.023 Sum_probs=38.4
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCC
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~ 758 (2304)
..+.|+|+..|+|+..--..| .--+++|+--.-...+.+-.+ .++++|+.|.+||+|+.+....
T Consensus 255 ~GtpV~A~~~G~V~~~~~~~g-----~G~~V~I~H~~g~~t~Y~HL~----~~v~~G~~V~~Gq~IG~vG~tG 318 (371)
T 3slu_A 255 QGTPVRASADGVITFKGRKGG-----YGNAVMIRHANGVETLYAHLS----AFSQAQGNVRGGEVIGFVGSTG 318 (371)
T ss_dssp TTCEEECSSSSBEEEEEECGG-----GCEEEEEECSTTEEEEEEEES----BCCCCCSBCCSSSEEEECBCCS
T ss_pred CCCEEEccCCeEEEEEEecCC-----CccEEEEEECCcEEEEEecCc----ccCCCcCEECCCCEEEEeCCCC
Confidence 357899999999987643321 122344443221222222211 1278999999999999987543
No 473
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=20.10 E-value=96 Score=37.09 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=51.4
Q ss_pred HhcCCCCCccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh--hccEEEEccCCCCCCC
Q 000086 40 RSLGGKKPIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR--IADQFVEVPGGTNNNN 116 (2304)
Q Consensus 40 ~~~~g~~~~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir--~ADe~v~vp~~~~~~s 116 (2304)
...++-+.-++|||.| .|.++.-+++.++.+|.+++ ++..+.. .....+ -||..+... ..+
T Consensus 133 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi-----------~~~~~~~-~~~~~~~~Ga~~~~~~~----~~~ 196 (325)
T 3jyn_A 133 RQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLI-----------GTVSSPE-KAAHAKALGAWETIDYS----HED 196 (325)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEE-----------EEESSHH-HHHHHHHHTCSEEEETT----TSC
T ss_pred HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEE-----------EEeCCHH-HHHHHHHcCCCEEEeCC----Ccc
Confidence 3455666778999999 79999999999999998764 2311111 111111 155555431 122
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCc
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGWGH 141 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~G~ 141 (2304)
+ .+.+.+.....++|.|+-..|.
T Consensus 197 ~--~~~~~~~~~~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 197 V--AKRVLELTDGKKCPVVYDGVGQ 219 (325)
T ss_dssp H--HHHHHHHTTTCCEEEEEESSCG
T ss_pred H--HHHHHHHhCCCCceEEEECCCh
Confidence 2 4555555555679999966553
No 474
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=20.00 E-value=81 Score=38.05 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=47.5
Q ss_pred cCCCCCccEEEEECchHHHHHHHHHHHHcCC-cccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCH
Q 000086 42 LGGKKPIHSILIANNGMAAVKFIRSIRTWAY-ETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120 (2304)
Q Consensus 42 ~~g~~~~~kILIan~G~~Av~iIrsar~~Gy-~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dv 120 (2304)
..+- .-++|||.|.|..+.-+++-++.+|. +++ ++..+........++||+.+.. ...++ .
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi-----------~~~~~~~~~~~~~~la~~v~~~----~~~~~--~ 221 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPIL-----------VSDPNPYRLAFARPYADRLVNP----LEEDL--L 221 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEE-----------EECSCHHHHGGGTTTCSEEECT----TTSCH--H
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEE-----------EECCCHHHHHHHHHhHHhccCc----CccCH--H
Confidence 4444 56799999999999999999999998 664 3311111101111125655432 11222 3
Q ss_pred HHHHHHHHHcCCCEEEeCCC
Q 000086 121 QLIVEMAEMTRVDAVWPGWG 140 (2304)
Q Consensus 121 d~Ii~iA~~~~vDaV~pG~G 140 (2304)
+.+.++. ..++|.|+-..|
T Consensus 222 ~~~~~~~-~~g~D~vid~~g 240 (343)
T 2dq4_A 222 EVVRRVT-GSGVEVLLEFSG 240 (343)
T ss_dssp HHHHHHH-SSCEEEEEECSC
T ss_pred HHHHHhc-CCCCCEEEECCC
Confidence 4555554 557899996655
Done!