BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000087
(2284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1
PE=1 SV=2
Length = 2376
Score = 610 bits (1572), Expect = e-173, Method: Compositional matrix adjust.
Identities = 344/786 (43%), Positives = 477/786 (60%), Gaps = 63/786 (8%)
Query: 1516 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1570
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1621 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1680
Query: 1571 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1621
+ HL +L A++D C K++T +I +E K+N + LIR+ L+
Sbjct: 1681 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1737
Query: 1622 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1677
N+ +Y++H+A+ ++ G N A FA+ L++ L+ DE + V ++L + ++ L ++ A
Sbjct: 1738 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAH 1797
Query: 1678 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1736
+ +PE L QL+E+VR+ A D+A + +S + E Y+
Sbjct: 1798 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1843
Query: 1737 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1793
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFF
Sbjct: 1844 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1899
Query: 1794 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1849
R TE+ V + + NP +P ++ + +D + +L+ ++K
Sbjct: 1900 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1957
Query: 1850 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 1909
+KI LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+
Sbjct: 1958 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2017
Query: 1910 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 1968
AF N FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L P
Sbjct: 2018 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2077
Query: 1969 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 2028
FLRN EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2078 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2137
Query: 2029 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 2088
RNMRLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+
Sbjct: 2138 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2195
Query: 2089 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 2148
L+ L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++
Sbjct: 2196 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2244
Query: 2149 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 2208
SA +DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQI
Sbjct: 2245 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2304
Query: 2209 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 2268
TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2305 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2364
Query: 2269 PVDDSM 2274
M
Sbjct: 2365 QAQQVM 2370
Score = 344 bits (882), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 197/555 (35%), Positives = 307/555 (55%), Gaps = 58/555 (10%)
Query: 811 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 870
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1074 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1132
Query: 871 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 930
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1133 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1192
Query: 931 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 988
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1193 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVF 1252
Query: 989 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1048
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1253 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1312
Query: 1049 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1108
+ S QP+ +P + S + PP H ++ Y+
Sbjct: 1313 DEQLSAPKKDVKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYS------ 1366
Query: 1109 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1168
LA L H+ +N +
Sbjct: 1367 ---------LAGL----------------------------------APHITLNPTIPLF 1383
Query: 1169 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1228
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1384 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1443
Query: 1229 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 1283
M+ +L +A +TC+EPL SIS+ L+NS L AS E+++QA + DN +L
Sbjct: 1444 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1503
Query: 1284 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1343
C I++ A +KA +D +A + L RKH G + DP + + +PE +R K G
Sbjct: 1504 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1562
Query: 1344 HLSVSQQRVYEDFVR 1358
+ Q VYE+F R
Sbjct: 1563 GVDPKQLAVYEEFAR 1577
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 205/397 (51%), Gaps = 26/397 (6%)
Query: 76 LFHECRDDDFDDIL------AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLT 127
L+ E RD D IL A+ E S+ D M E+GYG A +C+ I+ F +T
Sbjct: 227 LYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVT 286
Query: 128 EITLSRILGAIARTHAGLEDNQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIK 183
++R+LG +ARTH+GL D S G SD +WNV+VL+ +K
Sbjct: 287 AAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLK 346
Query: 184 QLAPNTNWIRVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQ 242
+L P+ N+ V LD+ GF I + + + + E FP+ + WK+ EGQ
Sbjct: 347 ELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRP-WKHAEGQ 405
Query: 243 LSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMG 302
LSF+++++ +P E+F FA D + + W LDL++ L +L+E+G
Sbjct: 406 LSFIQHSLINP-EIFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVG 464
Query: 303 HASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI- 361
+ + +P+K CP+ML+L + INT+++ +++E+ + P+ + + ++ +ILH
Sbjct: 465 QYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYA 524
Query: 362 WH---VNPNI-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIR 411
WH +P+I + ++ + + RIL++ Q+LK LS +L P F I
Sbjct: 525 WHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVID 584
Query: 412 LAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK 448
LA +AS++E + L+KWL+ + + + F + C+ F+K
Sbjct: 585 LAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLK 621
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 525 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 580
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 837 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 896
Query: 581 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 640
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 897 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 956
Query: 641 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 677
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 957 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1
PE=1 SV=2
Length = 2375
Score = 609 bits (1570), Expect = e-173, Method: Compositional matrix adjust.
Identities = 343/786 (43%), Positives = 477/786 (60%), Gaps = 63/786 (8%)
Query: 1516 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1570
Q L A+ A + Q + S + ++L SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1679
Query: 1571 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1621
+ HL +L A++D C K++T +I +E K+N + LIR+ L+
Sbjct: 1680 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1736
Query: 1622 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1677
N+ +Y++H+A+ ++ G N A FA+ L++ L+ DE + + ++L + ++ L ++ A
Sbjct: 1737 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAH 1796
Query: 1678 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1736
+ +PE L QL+E+VR+ A D+A + +S + E Y+
Sbjct: 1797 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1842
Query: 1737 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1793
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFF
Sbjct: 1843 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1898
Query: 1794 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1849
R TE+ V + + NP +P ++ + +D + +L+ ++K
Sbjct: 1899 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1956
Query: 1850 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 1909
+KI LL+K+L + V +L+D + +++ F PY R+FI LL++++ + V + NFQ L+
Sbjct: 1957 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2016
Query: 1910 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 1968
AF N FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L P
Sbjct: 2017 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2076
Query: 1969 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 2028
FLRN EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2077 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2136
Query: 2029 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 2088
RNMRLPDP TPNLK+D+L EI PRI + + Q + D+D YLKT P +FLS+
Sbjct: 2137 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2194
Query: 2089 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 2148
L+ L + + G RYN+ LIN+LVLYVG QAI +H + G+ S++
Sbjct: 2195 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2243
Query: 2149 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 2208
SA +DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQI
Sbjct: 2244 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2303
Query: 2209 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 2268
TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2304 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2363
Query: 2269 PVDDSM 2274
M
Sbjct: 2364 QAQQVM 2369
Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/555 (35%), Positives = 306/555 (55%), Gaps = 58/555 (10%)
Query: 811 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 870
NI+TL+ A ++ E +E P + +Q+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131
Query: 871 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 930
Y+VMKR SIEPNFH LY FLD + + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191
Query: 931 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 988
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251
Query: 989 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1048
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311
Query: 1049 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1108
+ S QP+ +P + S PP H ++ Y+
Sbjct: 1312 DEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS------ 1365
Query: 1109 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1168
LA L H+ +N +
Sbjct: 1366 ---------LAGL----------------------------------APHITLNPTIPLF 1382
Query: 1169 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1228
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1383 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1442
Query: 1229 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 1283
M+ +L +A +TC+EPL SIS+ L+NS L AS E+++QA + DN +L
Sbjct: 1443 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1502
Query: 1284 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1343
C I++ A +KA +D +A + L RKH G + DP + + +PE +R K G
Sbjct: 1503 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1561
Query: 1344 HLSVSQQRVYEDFVR 1358
+ Q VYE+F R
Sbjct: 1562 GVDPKQLAVYEEFAR 1576
Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 122/399 (30%), Positives = 207/399 (51%), Gaps = 30/399 (7%)
Query: 76 LFHECRDDDFDDIL------AEMEKEMSMGDVMNELGYGCSADASQCKEILSLF--TPLT 127
L+ E RD D IL A+ E S+ D M E+GYG A +C+ I+ F +T
Sbjct: 227 LYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVT 286
Query: 128 EITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS------SWNVDVLVKA 181
++R+LG +ARTH+GL D S A G SD S +WNV+VL+
Sbjct: 287 AAQVARVLGMMARTHSGLTDGIPLQSIS--APGSGIWSDGKDKSEGAQAHTWNVEVLIDV 344
Query: 182 IKQLAPNTNWIRVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTE 240
+K+L P+ N+ V LD+ GF I + + + + E FP+ + WK+ E
Sbjct: 345 LKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRP-WKHAE 403
Query: 241 GQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSE 300
GQLSF+++++ +P EVF FA D + + W LDL++ L +L+E
Sbjct: 404 GQLSFIQHSLINP-EVFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAE 462
Query: 301 MGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILH 360
+G + + +P+K CP+ML+L + INT+++ +++E+ + P+ + + ++ +ILH
Sbjct: 463 VGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILH 522
Query: 361 I-WH---VNPNI-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFA 409
WH +P+I + ++ + + RIL++ Q+LK LS +L P F
Sbjct: 523 YAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFV 582
Query: 410 IRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK 448
I LA +AS++E + L+KWL+ + + + F + C+ F+K
Sbjct: 583 IDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLK 621
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 525 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 580
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 836 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF 895
Query: 581 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 640
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 896 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 955
Query: 641 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 677
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 956 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 992
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 338/755 (44%), Positives = 465/755 (61%), Gaps = 63/755 (8%)
Query: 1547 SRDE-AALAVAQKVFKGLYENASNN------LHFSAHLAILAAIRD-------VCKLVVK 1592
SRD AAL + QK +GL + S + HL +L A++D C K
Sbjct: 1664 SRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCN---K 1720
Query: 1593 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQT 1652
++T +I +E K+N + LIR+ L+N+ +Y++H+A+ ++ G N A FA+ L++
Sbjct: 1721 QITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKI 1780
Query: 1653 LVTDE---SRVVISELHNLVDALAKLAA--KPGSPESLQQLIEIVRNPAANANASSGATT 1707
L+ DE S V +E + ++ L ++ A + +PE L QL++++R +N +A
Sbjct: 1781 LLVDERSVSHVTEAEFFHTIETLMRINAHSRGNAPEGLPQLMDVLR---SNFDAMM---- 1833
Query: 1708 AKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEW---YQICELPG 1764
++A + +S + E Y+ DP G E+ L EW Y
Sbjct: 1834 ---ERAHGGPNFMMHSGISQASE-YD-------DPPGLREKAEYLLREWVNLYHSAAAGR 1882
Query: 1765 SNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVA---HCLSSEVINPGTLQSPQQS 1821
+ A + +V Q+HQ G+LK DD+ RFFR TE+ V + + NP +P
Sbjct: 1883 DSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAA--NPTMI 1940
Query: 1822 QSLSFLAIDIYAKLMLSILK-CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPR 1880
++ + +D + +L+ ++K +KI LL+K+L + V +L+D E +++ F
Sbjct: 1941 RAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQL 2000
Query: 1881 PYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFM 1940
PY R+FI LL++++ + V + NFQ L+AF N FH+L+P K P F +AWLEL+SHR F+
Sbjct: 2001 PYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFI 2060
Query: 1941 PKLLIGN-GQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPE 1999
++L QKGWP +LL++L ++L PFLRN EL P++ LYKGTLRVLLVLLHDFPE
Sbjct: 2061 ARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPE 2120
Query: 2000 FLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEV 2059
FLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMRLPDP TPNLK+D+L EI PRI +
Sbjct: 2121 FLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNF 2180
Query: 2060 DAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYV 2119
+ Q + D+D YLKT P +FLSEL+ L + + G RYN+ LIN+LVLYV
Sbjct: 2181 TGVM-PPQFKKDLDSYLKTRSP-VTFLSELRSNLQV----SNEPGNRYNIQLINALVLYV 2234
Query: 2120 GMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLR 2179
G QAI +H + G+ S++ SA +DIFQ L DLDTEGRYLFLNA ANQLR
Sbjct: 2235 GTQAI-------AHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLR 2287
Query: 2180 YPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRY 2239
YPN+HTHYFS +LYL+AEAN E IQEQITRVL ERLIVNRPHPWGLLITFIELIKNP +
Sbjct: 2288 YPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAF 2347
Query: 2240 NFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 2274
FWN F+ CAPEIEKLF+SVA+ C G K M
Sbjct: 2348 KFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2382
Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 197/555 (35%), Positives = 306/555 (55%), Gaps = 33/555 (5%)
Query: 811 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 870
NI+TL+ A + +E P + VQ+KI+FI NN+S N+ K +E E +K+ Y PW +Q
Sbjct: 1060 NIDTLLVATDLAGQIVEPPEN-VQEKIAFIFNNLSQSNMTQKVEELKETVKDDYMPWVSQ 1118
Query: 871 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 930
Y+VMKR SIE NFH LY FLD + N+ ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1119 YLVMKRVSIELNFHSLYSNFLDALKHLEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLL 1178
Query: 931 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 988
KNLG WLG +T+ +N+ + ++D KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1179 KNLGHWLGMITLAKNKPILHTDLDLKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVF 1238
Query: 989 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1048
+PPNPWTMAI+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LLKD+ R
Sbjct: 1239 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLVLDINDLKPGTLLKDKDRLKSL 1298
Query: 1049 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1108
+ S QP+ +P P+ AS + A L S
Sbjct: 1299 DEQLSAPKKDVKQPEELP---------------PMTSAS--------EYAIRTAGKLWAS 1335
Query: 1109 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1168
D A + + Q Q + + + + + H+ +N +
Sbjct: 1336 VEKQESDAVFTATATAPPPSTTCTTTVPPQPQYSYHDIHVYS-LAGLAPHITLNPTIPLF 1394
Query: 1169 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1228
H ++ V A++RA++E+V +V RS+ IA T +++V KD+A++S+E+R+ AAH
Sbjct: 1395 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1454
Query: 1229 MVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIAS-----ELLEQAVQLVTNDNLDLG 1283
M+ +L +A +TC+EPL SI++ L+NS A+ E++EQA + DN +L
Sbjct: 1455 MMRNLTAGMAMITCREPLLMSIATNLKNSFATAMRAASPQQREMMEQAAAQLAQDNCELA 1514
Query: 1284 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1343
C I++ A +KA +D A + L RKH G + DP + + +PE +R K G
Sbjct: 1515 CCFIQKTAVEKAGPEMDKRPATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1573
Query: 1344 HLSVSQQRVYEDFVR 1358
+ Q VYE+F R
Sbjct: 1574 GVDPKQLAVYEEFAR 1588
Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 205/397 (51%), Gaps = 26/397 (6%)
Query: 76 LFHECRDDDFDDILAE---MEKEM---SMGDVMNELGYGCSADASQCKEILSLF--TPLT 127
L+ E RD D ILA+ + K M S+ D M E+GY A +C+ ++ F +T
Sbjct: 227 LYPEKRDILMDRILADSGGITKTMMDSSLADFMQEVGYSFCASVEECRNVIVQFGVREVT 286
Query: 128 EITLSRILGAIARTHAGLEDNQNTFSTFTLALGC----STMSDLPPLSSWNVDVLVKAIK 183
+ ++R+LG +ARTH+GL D S + G +D +WNV+VL+ +K
Sbjct: 287 AVQVARVLGMMARTHSGLTDGIPLQSITSPGSGIWSDGKDKNDAVQPHTWNVEVLIDVVK 346
Query: 184 QLAPNTNWIRVVENLDYEGFYIPTEEAF-SFFMSVYKYACQEPFPLHAVCGSVWKNTEGQ 242
+L P N+ V LD F I + + + + E FP+ V WKN EGQ
Sbjct: 347 ELNPTLNFKEVTYELDNPSFQIRDSKGLQTVVYGIQRGLGIEAFPVDLVYRP-WKNAEGQ 405
Query: 243 LSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMG 302
LSF+++++ +P +VF FA A D + + W LDL++ L +L+E+G
Sbjct: 406 LSFIQHSLVNP-DVFCFADYACHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAELG 464
Query: 303 HASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI- 361
+ + YP+K CP+ML+L + INT ++ +++E+ + P+ + + ++ +ILH
Sbjct: 465 QYEQVKQLFAYPIKHCPDMLVLALLQINTTWHTLRHELISTLMPIFLGNHPNSAIILHYA 524
Query: 362 WH---VNPNI-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIR 411
WH +P+I + ++ + + RIL++ Q+LK LS +L P F I
Sbjct: 525 WHGQGQSPSIRQLIMHAMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNGTPFAFVID 584
Query: 412 LAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK 448
LA +AS++E + L+KWL+ + + + F + C+ F+K
Sbjct: 585 LAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLK 621
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 525 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 580
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 831 NQHFSKEIDDEANSYFQRIYNQPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 890
Query: 581 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 640
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 891 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYQSKMYFFGIA 950
Query: 641 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 677
AL++F +RL ++PQYC H+ ISH L +IE
Sbjct: 951 ALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 987
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2
SV=1
Length = 2374
Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust.
Identities = 340/782 (43%), Positives = 478/782 (61%), Gaps = 56/782 (7%)
Query: 1516 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1570
Q L A+ A + Q + S + +++ SRD AAL + QK +GL + S
Sbjct: 1620 QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADPEL 1679
Query: 1571 --LHFSAHLAILAAIRDV----CKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 1624
+ HL +L A++D + K++T +I +E K+N + LIR+ L+N+
Sbjct: 1680 LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1739
Query: 1625 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA--KP 1679
+Y++H+A+ ++ G N A FA+ L++ L+ DE S + ++L + ++ L + +A +
Sbjct: 1740 QYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRA 1799
Query: 1680 GSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVD 1739
+PE L QL+++VR+ A D+ + +S + E Y+
Sbjct: 1800 NAPEGLPQLMDVVRS----------NYEAMIDRHHGGPNFMMHSGISQASE-YD------ 1842
Query: 1740 PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRL 1796
DP G E+ L EW Y + A + +V Q+HQ G+LK DD+ RFFR
Sbjct: 1843 -DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC 1901
Query: 1797 TE--VSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGSSKIF 1853
TE V +++ +E +P T SP ++ + +D + +L+ ++K +KI
Sbjct: 1902 TEMCVEISYRAQAEQQHPTT--SPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKIN 1959
Query: 1854 LLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFAN 1913
LL+K+L + V +++D + ++ F PY R+FI LL++++ + V + NFQ L+AF N
Sbjct: 1960 LLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN 2019
Query: 1914 AFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEPFLRN 1972
FH+L+P K P F +AWLEL+SHR F+ ++L QKGWP +LL++L ++L PFLRN
Sbjct: 2020 TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN 2079
Query: 1973 AELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR 2032
EL P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMR
Sbjct: 2080 VELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR 2139
Query: 2033 LPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQK 2092
LPDP TPNLK+D+L EI PRI + + + Q + D+D YLKT P +FLSEL+
Sbjct: 2140 LPDPFTPNLKVDMLSEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELRSN 2197
Query: 2093 LLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAAL 2152
L + + G RYN+ LIN+LV YVG QAI +H + G+ S++ SA +
Sbjct: 2198 LQV----SNEPGNRYNIQLINALVPYVGTQAI-------AHIHNKGSTPSMSTITHSAHM 2246
Query: 2153 DIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVL 2212
DIFQ L DLDTEGRYLFLNA ANQLRYPN+HTHYFS +LYL+AEAN E IQEQITRVL
Sbjct: 2247 DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVL 2306
Query: 2213 FERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDD 2272
ERLIVNRPHPWGLLITFIELIKNP + FW+ F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2307 LERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQ 2366
Query: 2273 SM 2274
M
Sbjct: 2367 VM 2368
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 811 NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 870
NI+TL+ A ++ E +E P + VQ+KI+FI NN+S N+ K +E E +KE++ PW +Q
Sbjct: 1066 NIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQ 1124
Query: 871 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 930
Y+VMKR SIEPNFH LY FLD + + + ++ TY N KVLL S+ ++ +RSLL
Sbjct: 1125 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1184
Query: 931 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 988
KNLG WLG +T+ +N+ + +++ KSL++EAY KG ++ V+PF +K+LE S+ +
Sbjct: 1185 KNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIF 1244
Query: 989 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1044
+P NPWTM I+ +LAE++ +LK+NLKF+IEVL KNL +D+ D+ P +LL+D+ +
Sbjct: 1245 RPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKDK 1300
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 212/398 (53%), Gaps = 28/398 (7%)
Query: 76 LFHECRDDDFDDIL---AEMEKEM---SMGDVMNELGYGCSADASQCKEILSLFTPLTEI 129
L+ + RD D IL ++ K M S+ D M E+GYG A +C+ I+ + + E+
Sbjct: 227 LYPDKRDILMDRILPDSGDLNKTMMESSLADFMQEVGYGFCASLEECRNIILQYG-VREV 285
Query: 130 TLS---RILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS----SWNVDVLVKAI 182
T S R+LG +ARTH+GL D + + G SD S +WNV+VL+ +
Sbjct: 286 TASQVARVLGMMARTHSGLSDGISLQTITNPVGGGGIWSDGKDKSDSSQAWNVEVLIDVV 345
Query: 183 KQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFM-SVYKYACQEPFPLHAVCGSVWKNTEG 241
K++ PN N+ V LD+ GF I + + + + E FP+ + WK+ EG
Sbjct: 346 KEVNPNLNFKEVTYELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRP-WKHAEG 404
Query: 242 QLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEM 301
QLSF+++++ SP EVF FA + +D + + W LDL++ L +LSE+
Sbjct: 405 QLSFIQHSLLSP-EVFCFADNPCHTVAIDTLKAPPEDDNREIATWKSLDLVESLLRLSEV 463
Query: 302 GHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHI 361
GH + + +P+K CP+ML+L + I+T+++ +++E+ + P+ + + ++ +ILH
Sbjct: 464 GHYEQVKQLFSFPIKHCPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHY 523
Query: 362 -WH---VNPNI-------VLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAI 410
WH +P+I + ++ + + RIL++ Q+LK LS +L P F I
Sbjct: 524 AWHGQGQSPSIRQLIMHSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVI 583
Query: 411 RLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK 448
LA +AS++E + L+KWL+ + + + F + C+ F+K
Sbjct: 584 DLAALASRREYLKLDKWLTDKIREHGEPFIQACVTFLK 621
Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 525 SEGYADDIEAEANSYFHQMFSG----QLTIEAMVQMLARFKESSVKREHSIFECMIGNLF 580
++ ++ +I+ EANSYF ++++ ++++ +++ML RFK+S++KRE +F CM+ NLF
Sbjct: 829 NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLF 888
Query: 581 EEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTK 640
EEYRFFP+YP+++L I A LFG II+ LVT++ LG+ALR VL+ALRKP SKM+ FG
Sbjct: 889 EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA 948
Query: 641 ALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE 677
AL++F +RL ++PQYC H+ I+H L +IE
Sbjct: 949 ALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIE 985
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 118/209 (56%), Gaps = 6/209 (2%)
Query: 1155 IGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYA 1214
+ H+ IN + L H ++ V A++RA++E+V +V RS+ IA T +++V KD+A
Sbjct: 1368 LAPHININVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFA 1427
Query: 1215 MESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIA-----SELLE 1269
++S+E+ + AAH M+ +L +A +TC+EPL SI++ L+NS A E++E
Sbjct: 1428 LDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMME 1487
Query: 1270 QAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQ 1329
+A + DN +L C I++ A +KA +D +A + L RKH G + DP +
Sbjct: 1488 EAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPMVLTY 1546
Query: 1330 GSMGVPEALRPKPGHLSVSQQRVYEDFVR 1358
+ +PE +R K G + Q VYE+F R
Sbjct: 1547 QAERMPEQIRLKVGGVDPKQLAVYEEFAR 1575
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not1 PE=1 SV=1
Length = 2100
Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust.
Identities = 415/1463 (28%), Positives = 654/1463 (44%), Gaps = 267/1463 (18%)
Query: 825 PIEAPASE------VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRAS 878
P+ P +E V D I F INN+S LN K K+ + L Y PWF+ Y+V +R S
Sbjct: 853 PLNVPNAEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVS 912
Query: 879 IEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLG 938
E NF LY KFL+++ S L + + + T + ++ + S E++ LKNLGSWLG
Sbjct: 913 REANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLG 972
Query: 939 KLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAI 998
+T+ RN+ + ++ K L++E + G + V+PF K+LE SS+ ++PPNPW M I
Sbjct: 973 SITLLRNKPITTLQVSFKDLLLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGI 1032
Query: 999 LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD---RKREIEGNPDFSNK 1055
L LL E+Y + ++NLKF+IE+L NL V M +I P+ + ++ +K ++E
Sbjct: 1033 LKLLVELYQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRNHLVQKADLEK------- 1085
Query: 1056 DVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMED 1115
+LP DV + G T +++QY
Sbjct: 1086 ------------------------ELPEDVLNAEFPDG-TDVITQY-------------- 1106
Query: 1116 EKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQ 1175
+ S Q+ + Q P I NI T +II Q +
Sbjct: 1107 ----IVAASSQITVTDAVAQVFGKPKP--------AIKNI-TQLIIQQSVL--------- 1144
Query: 1176 RVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAG 1235
++ + R++ ++ I +S L+ KD+A ES+ +R+ AA M +LAG
Sbjct: 1145 EIISAVVRRSVG--IAAITTKS----------LLQKDFAAESNPSRLLLAARQMAKTLAG 1192
Query: 1236 SLAHVTCKEPLRGSISSQLRN-SLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDK 1294
+LA VTC+EPL+ + + R +LQ + + QA+ + + NL + +VIE A++
Sbjct: 1193 NLAMVTCREPLQMLMINNFRTIALQDVENVHAAVAQAIDELVSQNLFVASSVIESVASET 1252
Query: 1295 AIQTIDGEIAQQLSLRRKHREGVGS-SFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVY 1353
AI ID EI + R +HR+ + F DP A + +P L+ L+ Q ++Y
Sbjct: 1253 AIAEIDAEIEHMIVERVRHRKTTPNLPFVDPAGAANLHLNLPSVLKLS-SELTPQQFQLY 1311
Query: 1354 EDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVS 1413
E+F RL S S G T S D+ A L N + A T + +
Sbjct: 1312 ENFDRLSLSTIMSNNSFTSLNGLRTDSADSTDALNSNL-----NNTVENEANQTALN-YA 1365
Query: 1414 RPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEP 1473
R + G +A TS+ + A LH E VN T A+
Sbjct: 1366 RNLLIIIGQLFQLAAQMPYTSMQEVPADHE--LH----ELVNQFLTGVAS---------- 1409
Query: 1474 VKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQG 1533
+ P A L + AQ+ ++ D++ +
Sbjct: 1410 INHPIADHVFL----------------------------LCAQECCRILLTDSKSPFILE 1441
Query: 1534 VISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKE 1593
V S + E I C + + A+ V+ LY N SN+L IL+ IR
Sbjct: 1442 VFSAILEYI--CQASTKTAINVS------LYWNFSNDLEKLNLPIILSLIR--------- 1484
Query: 1594 LTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKA-ATEFAISLLQT 1652
G++ S E + H+A+ + + T+FAI LL+T
Sbjct: 1485 -------------------FGILTS-----GEVDYHVARGVRSEQGSGPVTDFAIELLRT 1520
Query: 1653 LVTDESRVVISELHNLVDALAKL-----AAKPGSPESLQQLIEIVRNPAANANASSGATT 1707
V E+ + + N V+++ L + + ++ +QL+E + N + S +
Sbjct: 1521 AVGGENPMALP--GNFVNSITSLYEISESFSGETKQAYEQLVETM-----NKSVSPASEI 1573
Query: 1708 AKD-DKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSN 1766
D D +Q D Q+ ++F W + +N
Sbjct: 1574 LSDLDNKQQLND-----------------------------QIIIVFVSWVHLLRNSATN 1604
Query: 1767 DAACTRYVLQLHQNGLLKGDDMTDRFFR-RLTEVSVAHCLSSEVINPGTLQSPQQSQSLS 1825
D +V QLH+ G+L ++ +FFR L V VA ++ V P
Sbjct: 1605 DETKAAFVYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAASVNAPD------------ 1652
Query: 1826 FLAIDIYAKLMLSILKCCP-VEQG--SSKIFLLSKILTVTVKFILKDAEEKKASF-NPRP 1881
+ +D YA L+++++K +G SSK L KI+ + + + + A F + +
Sbjct: 1653 YFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIG-VFAELHNSMAEFVHQKT 1711
Query: 1882 YFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMP 1941
+FRLF + L ++ V + I S F +QP PAF+FAWL L+SH +P
Sbjct: 1712 FFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLP 1771
Query: 1942 KLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFL 2001
K+L+ N K +L++ L+FL+ L++ + LY G LR++LVLLHDFP FL
Sbjct: 1772 KVLLVNNDKINDLFSEILMSFLKFLD--LKDDIDKAQFKLLYNGFLRIILVLLHDFPGFL 1829
Query: 2002 CDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDA 2061
+ + IP C+Q+RN++LSAFP ++ LPDP LK+ LPE+ P I + V A
Sbjct: 1830 ATHCYQLIPYIPLECVQLRNMVLSAFPSDLHLPDPFAQGLKVGRLPEVTRAPLISNSVSA 1889
Query: 2062 ALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGM 2121
+L D++ + +P KLLL + T+ N N +L +
Sbjct: 1890 SLEKFASALDLEACFSSSKPAEV------AKLLLEVYSSQDTPTKLN-EWANYFMLCLIR 1942
Query: 2122 QAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYP 2181
A TR S A+ S + V I T+ + D++ RY L A ANQLRYP
Sbjct: 1943 HA-----TRDSPAKQAPQFQSKSPECV-----IISTMNRSCDSKCRYFLLTAIANQLRYP 1992
Query: 2182 NNHTHYFSFVLLYLYAEANQE----IIQEQITRVLFERLIVNRPHPWGLLITFIELIKNP 2237
++HT+Y S LYL+ ++ +I+EQ+T VL ER+I NRPHPWGLLITF EL+KN
Sbjct: 1993 SSHTYYASCCFLYLFKSSSNNPQELLIKEQMTTVLLERIICNRPHPWGLLITFTELLKNE 2052
Query: 2238 RYNFWNQSFIRCAPEIEKLFESV 2260
YNFW +I+ EI +LF+S+
Sbjct: 2053 DYNFWKHPYIKRNDEICRLFDSL 2075
Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 158/560 (28%), Positives = 276/560 (49%), Gaps = 46/560 (8%)
Query: 172 SWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYAC---QEPFPL 228
+W+ ++ KAI N NW ++ D F I + F +++ A Q F L
Sbjct: 292 AWDTVLMGKAIVSSFENLNWEAMLSMFDNPKFMITGTPSLVLFFTIFTNAYKLRQTNFTL 351
Query: 229 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQ-ANHAWL 287
+ +W+N QLS + + + SP +F P V +V LK S + N+A +
Sbjct: 352 DFL-WVLWRNPLPQLSIISHIILSPTSMFDIREFNVN-PVV-SVDSLKDYSEELVNYAKI 408
Query: 288 -------CLDLLDVLCQL-SEMGHASFARSMLEYPL--KQCPEMLLLGMAHINTAYNLIQ 337
C++L+ +L +L SE+ ++ S+ L K E+LLLG + A+N +Q
Sbjct: 409 YEKSNLNCIELVQILLRLLSEV--VTYETSLFLNFLDEKVSAELLLLGTLQLPLAWNPVQ 466
Query: 338 YEVSFAVFPMIIKSTMSNGMI-LHIWHVNPNIVLRGFVDAQNMEPDCTI-RILEICQELK 395
++F + + + + I NP L F+ + ++ ++ +++E E
Sbjct: 467 ESLAFQWCSDFFSNFKEHKFVFVRIERTNPQF-LFAFLRSLWLKDSSSVNQVVEFIIEND 525
Query: 396 ILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-----VFFEECLKFVKEV 450
S + + P+ FA+ +A +A+ ++ + + WL + ++D VF E L F+ +
Sbjct: 526 FTSHIGNIQPNRFALEIAALAAARKALSFQDWLDKKMLEFEDADGLNVFLVEVLDFL--M 583
Query: 451 QFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDS 510
Q ++ S L ++ + V+L L ++ + S ++SE I+ Q + L
Sbjct: 584 SRAALQKNESEQKEESVVL---SIDTVNVLLTTLMDNVSI--SEEVSEHIKDVQILCLQV 638
Query: 511 TPRLQN-GEAADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESS 564
PRL + G DS +T+ ++ D+E+E SYF ++ +++I +V L FK+S
Sbjct: 639 YPRLFSLGHDRDSIVIATNTTNSFSPDVESEVESYFQALYERRISIGKIVLTLQNFKKSE 698
Query: 565 VKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLD 624
R+ +F C+ +LF+EYRFFP YP L + AVLFGS+I+ +L++ + LG+ALR V
Sbjct: 699 NPRDLDLFACLQHSLFDEYRFFPDYPLEALALTAVLFGSLIQFELLSFVPLGVALRYVYQ 758
Query: 625 ALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARIS 684
AL P DSKMF FG +AL QF ++L ++ YCN IL I L+ ++ I +A
Sbjct: 759 ALLMPTDSKMFRFGMQALVQFQEKLPKYINYCNLILGIPSLQLVRPDIYDSIREMIASNE 818
Query: 685 SGHLESD------GASNPAA 698
+ +E D +NPA+
Sbjct: 819 NTEVEKDKLDSFSALANPAS 838
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC39 PE=1 SV=3
Length = 2108
Score = 280 bits (717), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 199/759 (26%), Positives = 363/759 (47%), Gaps = 95/759 (12%)
Query: 1528 EAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVC 1587
+ +++ +I ++ I + +D+ AL V+Q V L+ + + L +L + +
Sbjct: 1393 QNQIKTIIFQILTFIAKSAQKDQLALKVSQAVVNSLFATSESPLCREVLSLLLEKLCSLS 1452
Query: 1588 KLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKA--ATEF 1645
+ K++ W++Y+ + RKFN + L+ L++ E + L+ +NK +TEF
Sbjct: 1453 LVARKDVVWWLVYALDSRKFNVPVIRSLLEVNLIDATELD---NVLVTAMKNKMENSTEF 1509
Query: 1646 AISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGA 1705
A+ L+Q V + +++ + + L LA+ + + N
Sbjct: 1510 AMKLIQNTVLSDDPILMR--MDFIKTLEHLAS------------------SEDENVKKFI 1549
Query: 1706 TTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGS 1765
+D K + + T E++ ++F EW ++ + +
Sbjct: 1550 KEFEDTKIMPVRKGTKTTRT---------------------EKLYLVFTEWVKLLQRVEN 1588
Query: 1766 NDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLS 1825
ND T ++ QL + G++ D F + E+SV+ S+ +
Sbjct: 1589 NDVITTVFIKQLVEKGVISDTDNLLTFVKSSLELSVSSFKESDPTDE------------V 1636
Query: 1826 FLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRL 1885
F+AID L++ +L + + + ++ + I +V V KD ++ +FN RPYFRL
Sbjct: 1637 FIAIDALGSLIIKLLILQGFKDDTRRDYI-NAIFSVIVLVFAKDHSQEGTTFNERPYFRL 1695
Query: 1886 FINWLLDMSSLDP-----VADGSNFQIL----SAFANAF----HVLQPLKVPAFSFAWLE 1932
F N L + +++ ++D S Q L S F N F H LQP P FSFAW+
Sbjct: 1696 FSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHALQPFAFPGFSFAWVT 1755
Query: 1933 LVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLV 1992
L+SHR +P +L + GW + L+++L +FL+ + + V +YKGTLRV+L
Sbjct: 1756 LLSHRMLLPIMLRLPNKIGWEKLMLLIIDLFKFLDQYTSKHAVSDAVSVVYKGTLRVILG 1815
Query: 1993 LLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDP 2052
+ +D P FL + H+ + +PP+ Q++N+ILSA P+NM +P+P +L ++ +P ++
Sbjct: 1816 ISNDMPSFLIENHYELMNNLPPTYFQLKNVILSAIPKNMTVPNPYDVDLNMEDIPACKEL 1875
Query: 2053 PRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNV--- 2109
P +F D + ++ VD+YL+ P +S L + + + G Y+
Sbjct: 1876 PEVF--FDPVIDLHSLKKPVDNYLRI--PSNSLLRTILSA-IYKDTYDIKKGVGYDFLSV 1930
Query: 2110 --PLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGR 2167
LI ++VL+VG++A + + +S+A +S T LIQ+ E +
Sbjct: 1931 DSKLIRAIVLHVGIEAGIEYKRTSSNAVFNTKSSYYTLLF---------NLIQNGSIEMK 1981
Query: 2168 YLFLNAAANQLRYPNNHTHYFSFVLLYLYA--EANQEI--IQEQITRVLFERLIVNRPHP 2223
Y + + QLRYPN HT++FSFVL+ ++ E N + +QE I R +R+IVN+PH
Sbjct: 1982 YQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIILRNFLKRIIVNKPHT 2041
Query: 2224 WGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVAR 2262
WG+ + F +LI N N + F++ PEI+ + + + +
Sbjct: 2042 WGVSVFFTQLINNNDINLLDLPFVQSVPEIKLILQQLVK 2080
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 146/267 (54%), Gaps = 10/267 (3%)
Query: 773 SSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASE 832
S AQ + V A + + +RP + + KF + + + E +
Sbjct: 733 SQAQVYQSIVEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQ--------EGAPKD 784
Query: 833 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 892
V +K+ F++NN++ N+ K E + L Y+ WF+ Y+V +RA EPN+HDLY K +
Sbjct: 785 VVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIV 844
Query: 893 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 952
+ S L++ +V T VLL ++ + ++ LKNL SWLG +T+ N+ ++ +
Sbjct: 845 AMGSGLLHQFMVNVTLRQLFVLLSTK--DEQAIDKKHLKNLASWLGCITLALNKPIKHKN 902
Query: 953 IDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLK 1012
I + ++IEAY++ + V+PF +KIL+ S ++PPNPWT+ IL LL E+ N K
Sbjct: 903 IAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKANWK 962
Query: 1013 MNLKFDIEVLFKNLGVDMKDITPTSLL 1039
++L F++EVL K+ + K + P++ +
Sbjct: 963 LSLTFEVEVLLKSFNLTTKSLKPSNFI 989
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 514 LQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFE 573
L NG+ A G +DIE E +Y +M+SG+L I+ ++++L R ++S + R+ +F
Sbjct: 585 LANGDIA------GINNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFT 638
Query: 574 CMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSK 633
C+ + E FF YP L +VLFGS+I QL+ L +A R ++ ++P +SK
Sbjct: 639 CITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPESK 698
Query: 634 MFVFGTKALEQFVDRLIEWPQYCNHILQ 661
MF F +A+ F RL E+PQYC +L+
Sbjct: 699 MFKFAVQAIYAFRIRLAEYPQYCKDLLR 726
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 106/191 (55%)
Query: 1166 TALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNA 1225
T H +RV +A+ ++++EI+ +V++S IA TT +++LKD+A E DE+++ A
Sbjct: 1080 TIFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTA 1139
Query: 1226 AHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCA 1285
A +MV LA SLA T EPL+ I S +++ L S + + N+N+ +
Sbjct: 1140 AIIMVRHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAEELDTAINENIGIALV 1199
Query: 1286 VIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHL 1345
+IE+A+ DK+ Q + ++ Q +++RR H+E F S+ +PE L K +
Sbjct: 1200 LIEKASMDKSTQDLADQLMQAIAIRRYHKERRADQPFITQNTNPYSLSLPEPLGLKNTGV 1259
Query: 1346 SVSQQRVYEDF 1356
+ Q RVYE+F
Sbjct: 1260 TPQQFRVYEEF 1270
>sp|Q8Y5X6|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1
Length = 365
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 569 HSIFECMIGNLFE------EYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGV 622
H + + MIGN ++ + +FF PER+LR F +IKH L++ LTL LR +
Sbjct: 147 HPLGKNMIGNFYQPEAVIYDTQFFATLPERELRSG---FAEMIKHALISDLTL---LRAL 200
Query: 623 LDALRKPADSKMFVFGTKALEQFVDRLIE 651
+D +P D F TK L F+ R IE
Sbjct: 201 MDTFTEPKD-----FYTKDLTPFLQRGIE 224
>sp|Q8TSP6|SYC_METAC Cysteine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=cysS PE=3 SV=1
Length = 473
Score = 42.0 bits (97), Expect = 0.054, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 2121 MQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRY 2180
++A+ +L+T+ HA N+ AL +F+ L + + L+L A N+
Sbjct: 349 LKALPELETQFRHALEDDFNTP-------RALTVFRELSRTAN-----LYLEAGKNRKVL 396
Query: 2181 PNNHTHYFSFV-LLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRY 2239
HT Y F +L L+A+A +E I E++ R++ ER + WG T E I+ Y
Sbjct: 397 EKVHTLYRKFSDVLGLFAQAGKEEIPEEVFRLVEEREAARKKKDWGTSDTLREKIRTLGY 456
Query: 2240 NFWNQSFIRCAPEIEKLFES 2259
++ + P ++K ES
Sbjct: 457 IIQDK---KEGPNVKKAEES 473
>sp|A6LSY5|HEM3_CLOB8 Porphobilinogen deaminase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=hemC PE=3 SV=1
Length = 291
Score = 40.0 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 1189 IVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMV-----ASLAGSLAHVTCK 1243
+ G + VS+A K L +KD + E R A H M S +A +T +
Sbjct: 39 VTEGDRKLDVSLAKIGGKGLFVKDIEIALLEKRADGAVHSMKDVPYELSHEFEIAAITER 98
Query: 1244 EPLRGSISSQ----LRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIE---QAATDKAI 1296
E +R + S+ + +G I + + +A QL N DL I Q +K
Sbjct: 99 EDIRDVLISKDNIPFKELRKGAIIGTSSIRRACQLKLMRN-DLDIVPIRGNVQTRLEKMK 157
Query: 1297 -QTIDGEIAQQLSLRRKHREGVGSSFFDPNIY----AQGSMGV 1334
Q +DG I L+R + E + + +FDP ++ AQG++G+
Sbjct: 158 EQNLDGIILASAGLKRLNEEDIITEYFDPKVFIPAVAQGALGI 200
>sp|Q7D5C5|PPE62_MYCTU Uncharacterized PPE family protein PPE62 OS=Mycobacterium
tuberculosis GN=ppe62 PE=3 SV=1
Length = 582
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 1361 WQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQG------YSSSAGSTGF-DAVS 1413
W N + A +AGSL ++G A + G G GN G +++ GS+GF + S
Sbjct: 465 WSNSGLTNTGAFNAGSL-NTGFGAVGTGSGPNSGFGNAGTNNSGFFNTGVGSSGFQNGGS 523
Query: 1414 RPSDVASGTTESTSAGFLSTSLVHIGAADGGILHN 1448
S + + +AGF +T +G A+ G+L++
Sbjct: 524 NNSGLQNAVGTVIAAGFGNTGAQTVGIANSGVLNS 558
>sp|Q09693|DPO4_SCHPO DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1
Length = 506
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 188 NTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAV 231
N N ++ ++N+D EG PT + + + + + +YACQ PL V
Sbjct: 135 NNNEVKSIDNVDQEGSVYPTTKEYPYVLEIPRYACQRKTPLKCV 178
>sp|A5DUP0|U507_LODEL UPF0507 protein LELG_01076 OS=Lodderomyces elongisporus (strain
ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL
YB-4239) GN=LELG_01076 PE=3 SV=1
Length = 1260
Score = 35.4 bits (80), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 805 KFGSALNIETLVAAAERRETPIEAPASE--VQDKISFIINNISALNVEAKAKEFTEILKE 862
K+G N+E+++A R + E P++ + D +SF+ + NVE K+ E
Sbjct: 781 KYGRLENLESILAD-NRLDFLAEDPSTHYNIFDYLSFLAGRYAKENVEKIEKKLIEFYFS 839
Query: 863 QYYPWFAQY-MVMKRASIEPNFHDLYLKF 890
Y+P+ A Y +V +P+ D Y+ +
Sbjct: 840 HYFPFEAHYKLVALNGKYDPSTRDWYIYY 868
>sp|P56342|PSAB_CHLVU Photosystem I P700 chlorophyll a apoprotein A2 OS=Chlorella vulgaris
GN=psaB PE=3 SV=1
Length = 734
Score = 35.0 bits (79), Expect = 8.2, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1561 KGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYS 1601
KGLY+ +N+LHF LA LA++ +C LV + + S Y+
Sbjct: 320 KGLYDTVNNSLHFQLGLA-LASVGTICSLVAQHMYSLPPYA 359
>sp|Q9Y2D5|AKAP2_HUMAN A-kinase anchor protein 2 OS=Homo sapiens GN=AKAP2 PE=1 SV=3
Length = 859
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Query: 1058 GASQPQLVPEVKPAIVSPLGHV--DLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMED 1115
G S P+L +KP PLG V D PL PP+ GGP AA + S G L
Sbjct: 343 GQSTPRLF-SIKP-FYRPLGSVNSDKPLTNPRPPSVGGPPEDSGASAAKGQKSPGAL--- 397
Query: 1116 EKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNI----GTHVIINQKLTAL--- 1168
E +A G +QG + + P+S P+ + G LT +
Sbjct: 398 ETPSAAG-------SQGNTASQGKEGPYSEPSKRGPLSKLWAEDGEFTSARAVLTVVKDD 450
Query: 1169 --GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMES 1217
G+ F R V +++ + +E+ SG+ + SV T E + D++M++
Sbjct: 451 DHGILDQFSRSVNVSLTQ--EELDSGLDELSVRSQDTTVLETLSNDFSMDN 499
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,782,974
Number of Sequences: 539616
Number of extensions: 33166093
Number of successful extensions: 98948
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 97544
Number of HSP's gapped (non-prelim): 1100
length of query: 2284
length of database: 191,569,459
effective HSP length: 134
effective length of query: 2150
effective length of database: 119,260,915
effective search space: 256410967250
effective search space used: 256410967250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)