Query 000087
Match_columns 2284
No_of_seqs 216 out of 285
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_A CCR4-NOT transcription 100.0 3.3E-81 1.1E-85 707.6 20.3 218 829-1046 3-222 (229)
2 4b89_A General negative regula 100.0 3E-81 1E-85 710.5 16.0 220 823-1044 24-243 (249)
3 4b8b_A General negative regula 100.0 3.1E-79 1.1E-83 758.6 34.7 480 177-681 89-596 (603)
4 3rk6_A Polyadenylate-binding p 72.1 7.8 0.00027 45.1 8.4 187 830-1024 16-232 (234)
5 2vso_E Eukaryotic initiation f 68.3 13 0.00046 44.3 9.6 194 828-1024 31-275 (284)
6 1hu3_A EIF4GII; heat repeat, t 60.7 11 0.00037 44.5 6.7 187 831-1024 9-235 (260)
7 1h2v_C 80 kDa nuclear CAP bind 29.3 1.3E+02 0.0043 41.0 9.9 207 1961-2237 393-632 (771)
8 2rg8_A Programmed cell death p 27.1 2.5E+02 0.0087 30.7 10.2 89 529-628 6-94 (165)
9 2ion_A PDCD4, programmed cell 21.0 3.5E+02 0.012 29.3 9.7 90 530-628 6-95 (152)
10 1h2v_C 80 kDa nuclear CAP bind 20.7 1.9E+02 0.0067 39.2 9.3 106 829-942 4-117 (771)
No 1
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=100.00 E-value=3.3e-81 Score=707.62 Aligned_cols=218 Identities=48% Similarity=0.855 Sum_probs=214.8
Q ss_pred CChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhhhhHHHHHhhcccCCchhHHHHHHHHHhCChhHHHHHHHHHH
Q 000087 829 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 908 (2284)
Q Consensus 829 Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~~~y~~WFA~YLV~kRAsiEPNfH~LYl~fl~~l~~~~L~~~Vl~~Ty 908 (2284)
++|+|||||+|||||+|++|+++|++|+|++|+++|++|||+|||+||||+|||||+||++|+++++++.|+++|+++||
T Consensus 3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~ 82 (229)
T 4gmj_A 3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY 82 (229)
T ss_dssp SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccChHHHHHHHhhhhhHhhhhhhcCcccccCCCChhHHHHHHHhcCc--eEEEechhhhhccccCCCc
Q 000087 909 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL 986 (2284)
Q Consensus 909 ~~i~~LL~se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~--L~~VIPFV~KVLe~~~~S~ 986 (2284)
++|++||++++++.+++||++|||||+|||+|||||||||+||+||+|+||+|||++|. |++|||||||||++|++|+
T Consensus 83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~ 162 (229)
T 4gmj_A 83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV 162 (229)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred cccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchhhc
Q 000087 987 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREI 1046 (2284)
Q Consensus 987 vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~dieps~~L~~r~~~~ 1046 (2284)
||||||||||+||++|+|||++||||+|||||||||||+|++|++||+|+++|++|++..
T Consensus 163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~~ 222 (229)
T 4gmj_A 163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLK 222 (229)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTGG
T ss_pred cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchhc
Confidence 999999999999999999999999999999999999999999999999999999998743
No 2
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=100.00 E-value=3e-81 Score=710.52 Aligned_cols=220 Identities=34% Similarity=0.658 Sum_probs=211.5
Q ss_pred CCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhhhhHHHHHhhcccCCchhHHHHHHHHHhCChhHHHH
Q 000087 823 ETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNRE 902 (2284)
Q Consensus 823 ~~~~e~Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~~~y~~WFA~YLV~kRAsiEPNfH~LYl~fl~~l~~~~L~~~ 902 (2284)
...+|.|||+|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||+||++|+++++++.|+++
T Consensus 24 ~~~~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~~L~~~ 103 (249)
T 4b89_A 24 QINQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSGLLHQF 103 (249)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHH
T ss_pred CccCCCcCHHHHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccChHHHHHHHhhhhhHhhhhhhcCcccccCCCChhHHHHHHHhcCceEEEechhhhhcccc
Q 000087 903 IVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPC 982 (2284)
Q Consensus 903 Vl~~Ty~~i~~LL~se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~ 982 (2284)
|+++||++|++||+++++ +++||++|||||+|||+|||||||||+||+||+|+||+|||++|+|.+|||||||||++|
T Consensus 104 vl~~T~~~i~~LL~~~~i--~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~ 181 (249)
T 4b89_A 104 MVNVTLRQLFVLLSTKDE--QAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRA 181 (249)
T ss_dssp HHHHHHHHHHHHHTBSCG--GGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhccc--ChHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhc
Confidence 999999999999999876 478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchh
Q 000087 983 QSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1044 (2284)
Q Consensus 983 ~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~dieps~~L~~r~~ 1044 (2284)
++|+||||||||||+||++|+|||++||||+|||||||||||+|++|++||+||++|+++++
T Consensus 182 k~SkiFkPPNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~i~ps~~l~~~~~ 243 (249)
T 4b89_A 182 SESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEV 243 (249)
T ss_dssp TTCSSSSTTCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGGSCCCCCC-----
T ss_pred ccCCccCCCCchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHcCCChHhCCcccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765
No 3
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.1e-79 Score=758.56 Aligned_cols=480 Identities=21% Similarity=0.338 Sum_probs=378.1
Q ss_pred HHHHHHHhhCC-CCCHHHHHHhc-----CCCCCCCCChhhHHHHHHHHhhhcCCCcccccccCCccc-ChhhhHHHHHHH
Q 000087 177 VLVKAIKQLAP-NTNWIRVVENL-----DYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWK-NTEGQLSFLRYA 249 (2284)
Q Consensus 177 v~v~alk~~~p-~lnW~~Vi~~l-----D~~~f~i~d~~~l~ll~~~~~~~~~~~fpi~~l~~~~W~-N~~~Qlsfl~~~ 249 (2284)
-+-.+++.+.. ++||.+|+..+ |. .-.-|...++.-+++++..+ -+|+.++...|. .=.-.|.++-|-
T Consensus 89 q~~~~~~~~~~~~inW~~vFnlms~~~f~~-~~~~pt~asls~~~~~L~~~----~liD~F~~~dw~~~f~~~l~~~L~~ 163 (603)
T 4b8b_A 89 VIARSISSLQANQINWNRVFNLMSTKYFLS-APLMPTTASLSCLFAALHDG----PVIDEFFSCDWKVIFKLDLAIQLHK 163 (603)
T ss_dssp HHHHHHHTSCGGGSCHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHCSH----HHHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccCHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHcCCC----chHHHHHcCcchHhHhHHHHHHHHh
Confidence 34466777755 89999999875 33 22446667777788887742 456666655664 344555555555
Q ss_pred hhCCCCccccCCCC-cccccccCCCCccccccccccccc---hHHHHHHHHH---hhhcCchHHHHHHhhhhhhcChhHH
Q 000087 250 VASPPEVFTFAHSA-RQLPYVDAVPGLKLQSGQANHAWL---CLDLLDVLCQ---LSEMGHASFARSMLEYPLKQCPEML 322 (2284)
Q Consensus 250 l~~p~~~f~f~~~~-~~~v~~d~~~~~~~~~~~~~~~W~---sldl~e~L~~---Lae~~~~~~v~~l~~~p~~~~pe~l 322 (2284)
.+..-.-||+..++ -+.++- ..++.+ ...=.+. +||+ +.+.. ++++..-....+.|+.-.+..||.+
T Consensus 164 ~~~~qg~~dl~~~~~~~~~~~-~~p~~~----~~ll~~~si~~l~l-~~~~~~~~~~~~~~~~~~~~~f~~d~~~~Peyl 237 (603)
T 4b8b_A 164 WSVQNGCFDLLNAEGTRKVSE-TIPNTK----QSLLYLLSIASLNL-ELFLQREELSDGPMLAYFQECFFEDFNYAPEYL 237 (603)
T ss_dssp CCTTTTCCCGGGCTTCCBSCS-SSCCCS----CCGGGBHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred cCccCCchhhhcCCCceeccc-CCCCcc----cceeeeeehhhhhH-HHHHHHHHhccchhHHHHHHHHhhhhccCHHHH
Confidence 54333455666655 333332 212111 0111122 3333 22222 2222223456789999999999999
Q ss_pred HHHhhccCcch------hHHHHHHHHhhhHHhhcCCCch-HHHHHHHhhCChhHHHHHHHhhccCCccHHHHHHHHHHhh
Q 000087 323 LLGMAHINTAY------NLIQYEVSFAVFPMIIKSTMSN-GMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELK 395 (2284)
Q Consensus 323 llgl~~i~~~~------~~l~~ell~~l~~~fl~~~~~~-~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk 395 (2284)
.+++..-.+.| ..+.+|++-.||-..+.+.+.+ .-+.+.+. ++.-++......+++|+.+++|++|||+|+|
T Consensus 238 al~~~~~~k~~~~~~en~~~i~~l~~~l~~~~~~~~~~~l~~~i~~~~-~~~k~~~~~~~Ii~kD~~~l~rildi~~elk 316 (603)
T 4b8b_A 238 ILALVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTIT-DDSKIVDAAKIIINSDDAPIANFLKSLLDTG 316 (603)
T ss_dssp HHHHHHTHHHHHHHHCCHHHHHHHHHHHHHHHHHSCGGGHHHHHHHCC-CHHHHHHHHHHHHHHSCSCCSHHHHHHHHTT
T ss_pred HHHHHhhccccccccccchHHHHHHHHHHHHHHhcChHHHHHHHHHcc-ChhHHHHHHHHHHhcCchhHHHHHHHHHHhC
Confidence 77776544444 4567788888887777544333 23444454 4455558888899999999999999999999
Q ss_pred hhhhhhcccCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccch
Q 000087 396 ILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYME 475 (2284)
Q Consensus 396 ~L~~lL~~~p~~f~idLA~lAsrre~l~lekWl~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~e 475 (2284)
||+.||+..||+||+|||++||||||+|||+|++++++.+|.+ +|++||+.|+..+. +. .+.++..+|.++
T Consensus 317 ~L~~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~---~lL~FL~~K~~~e~----~~--~~~~~~~~L~i~ 387 (603)
T 4b8b_A 317 RLDTVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVD---VVLESLEVQTKMTD----TN--TPFRSLKTFDLF 387 (603)
T ss_dssp CHHHHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHH---HHHHHHHHHHHCCC----C----CSCTTTSCCHH
T ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHhhcCch---HHHHHHHHHhhccc----cC--CCCCCCceecHH
Confidence 9999999999999999999999999999999999999999976 99999999997651 11 122234568889
Q ss_pred hHHHHHHHHHhhhCCCCchHHHHHHHHHHHHhhccCCCCCCCC-CCCC-----CCCCCCchhHHHHHHHHHHHhhccCCC
Q 000087 476 KIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADS-----STSEGYADDIEAEANSYFHQMFSGQLT 549 (2284)
Q Consensus 476 tv~~lL~~L~~~~~~~~s~~l~e~l~~~~~~~i~~~PrL~n~~-~~d~-----~~~~~~~~dIE~Ean~yfqkmYs~eis 549 (2284)
|+++||++|++. .++.+..+++++++..|+++||||+|+| |||+ +.++.||+|||+|||+||||||++++|
T Consensus 388 tv~~lLk~L~~~---~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~~~~dIE~ean~yfqkmY~~eis 464 (603)
T 4b8b_A 388 AFHSLIEVLNKC---PLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELA 464 (603)
T ss_dssp HHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHhCchhhcCCCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence 999999999864 4578889999999999999999999999 8886 356789999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccchhhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHhcCC
Q 000087 550 IEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKP 629 (2284)
Q Consensus 550 I~~iv~~L~r~K~S~~~rdqdiFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrkp 629 (2284)
|+++|++|+|||+|+++||||||+||||+||||||||++||++||++||+|||+||+|+||++.+|++||||||||+|+|
T Consensus 465 I~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrkp 544 (603)
T 4b8b_A 465 IKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEP 544 (603)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHhhhhhhHHHHHHh-cccccccccHHHHHHHHHHHH
Q 000087 630 ADSKMFVFGTKALEQFVDRLIEWPQYCNHIL-QISHLRSTHAELVAFIERALA 681 (2284)
Q Consensus 630 ~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Ll-~ip~L~~~~p~l~~~ie~~l~ 681 (2284)
++||||+||++||+||++||+||||||.+|+ +|||| +++|+||+.|+++..
T Consensus 545 ~~skmf~FGi~ALeqF~~RL~ewPqyc~~lL~~ip~l-q~~P~l~q~i~~~a~ 596 (603)
T 4b8b_A 545 PESKMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPAL-KSQAQVYQSIVEAAT 596 (603)
T ss_dssp TTSHHHHHHHHHHHHTGGGGGGCHHHHHHHHHHCGGG-GGCHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc-ccChHHHHHHHHHHc
Confidence 9999999999999999999999999997766 79999 588999999998754
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=72.15 E-value=7.8 Score=45.10 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=112.7
Q ss_pred ChhhhHhHhhhhhcCC--cccHHHHHHHHHHHhh-----hcchhhhhHHHHHhhcccCCchhHHHHHHHHHhCCh-----
Q 000087 830 ASEVQDKISFIINNIS--ALNVEAKAKEFTEILK-----EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK----- 897 (2284)
Q Consensus 830 pe~vqDKI~FIiNNlS--~~Nle~K~~Elke~L~-----~~y~~WFA~YLV~kRAsiEPNfH~LYl~fl~~l~~~----- 897 (2284)
++.+..||.-|+|-|| ++|++.-++++.+.+. ++...-+..-++. .|-.||||-.+|.++...|..+
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfe-kAi~ep~fs~~YA~LC~~l~~~l~~~~ 94 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQ-QATSIPNFSYMGARLCNYLSHHLTISP 94 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-HHHSSTTCHHHHHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHhcCCCC
Confidence 5689999999999999 9999999999988753 3455566665554 4889999999999999988642
Q ss_pred ---hHHHHHHH---HHHHHHHHHhcccccccChHHHHHHHhhhhhHhhhhhhcC------cccccCCC---ChhHHHHHH
Q 000087 898 ---ALNREIVQ---ATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN------QVLRAREI---DPKSLIIEA 962 (2284)
Q Consensus 898 ---~L~~~Vl~---~Ty~~i~~LL~se~~~~ss~eRslLKNLGsWLG~iTLarN------kPI~~k~l---d~K~LL~ea 962 (2284)
.+.+..|+ +-|++-...... +...|...-+.--++|-+-.-.+ +++ +-.| .+++||-.-
T Consensus 95 ~~~~Fr~lLL~rcQ~eFe~~~~~~~~-----d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l-~e~I~~~ci~~Ll~~l 168 (234)
T 3rk6_A 95 QSGNFRQLLLQRCRTEYEVKDQAAKG-----DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVT-RADILQVGLRELLNAL 168 (234)
T ss_dssp TTCCHHHHHHHHHHHHHTTHHHHTSS-----CHHHHHHHHHHHHHHHHHHHHCCEECTTSSEE-CCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhHHhhhc-----cHHHHHHHHHHHHHHHHHHhhhcccccccchh-HHHHHHHHHHHHHHhc
Confidence 13333332 334333222222 11223322233336777765422 333 2222 356665432
Q ss_pred HhcCceEEEechhhhhccccCCCcc---ccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHh
Q 000087 963 YEKGLMIAVIPFTSKILEPCQSSLA---YQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1024 (2284)
Q Consensus 963 Y~~g~L~~VIPFV~KVLe~~~~S~v---FkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K 1024 (2284)
.++ .-.--|-.+|++|..|.+.-= +.--.++.-.++.-|.++.+.+++--.++|=|+.|+.
T Consensus 169 ~~~-p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dlie 232 (234)
T 3rk6_A 169 FSN-PMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVE 232 (234)
T ss_dssp HHS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cCC-CChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 221 111223344555543321100 0011268888999999999989999999999998864
No 5
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=68.25 E-value=13 Score=44.25 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=110.7
Q ss_pred CCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhc-------chhhhhHHHHHhhcccCCchhHHHHHHHHHhCCh---
Q 000087 828 APASEVQDKISFIINNISALNVEAKAKEFTEILKEQ-------YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--- 897 (2284)
Q Consensus 828 ~Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~~~-------y~~WFA~YLV~kRAsiEPNfH~LYl~fl~~l~~~--- 897 (2284)
...+++.-||.-|+|-||++|++.=+.+|.++-... -..=+.. +|.+.|-.||+|=.+|.+|+..|...
T Consensus 31 ~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~-~If~kA~~ep~fs~~YA~Lc~~l~~~l~~ 109 (284)
T 2vso_E 31 LDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIE-QIFLKACDEPHWSSMYAQLCGKVVKELNP 109 (284)
T ss_dssp CCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHSCT
T ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHH-HHHHHHHcCcchHHHHHHHHHHHHHhcCc
Confidence 456889999999999999999999999998875321 1122333 45677999999999999999886532
Q ss_pred -------------hHH-HHHHHHHHHHHHHHhcccccccC------------------hHHHHHHHhhhhhHhhhhhhcC
Q 000087 898 -------------ALN-REIVQATYENCKVLLGSELIKSS------------------SEERSLLKNLGSWLGKLTIGRN 945 (2284)
Q Consensus 898 -------------~L~-~~Vl~~Ty~~i~~LL~se~~~~s------------------s~eRslLKNLGsWLG~iTLarN 945 (2284)
.++ +.+|+..-..-..... ++...+ ...|..--|+-.++|-+-.-+=
T Consensus 110 ~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~-~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~ 188 (284)
T 2vso_E 110 DITDETNEGKTGPKLVLHYLVARCHAEFDKGWT-DKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNL 188 (284)
T ss_dssp TCCBCC---CCTHHHHHHHHHHHHHHHHHHCCC-SSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHhhhhh-hhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 122 2333222111111111 110000 0112222233466666543211
Q ss_pred cccccCCCChhHHHHHHHhcCceEEEechhhhhccccCCCccccCC---------CccHHHHHHHHHHHhcCCcccchhH
Q 000087 946 QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPP---------NPWTMAILGLLAEIYSMPNLKMNLK 1016 (2284)
Q Consensus 946 kPI~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPP---------NPWtm~IL~lL~Ely~~~~LKlnLK 1016 (2284)
-+-+.=.-.++.||- .+....=.--|=.+|++|..|...-=-.+| -+..-.++..|.++-+.+++---++
T Consensus 189 l~~~i~~~ci~~LL~-~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~Rir 267 (284)
T 2vso_E 189 LTGKMMFECFRRLMK-DLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIK 267 (284)
T ss_dssp SCHHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred CcHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 110000112445543 222111122355678888877544222222 2478889999999988888888899
Q ss_pred HHHHHHHh
Q 000087 1017 FDIEVLFK 1024 (2284)
Q Consensus 1017 FEIEVL~K 1024 (2284)
|=||.++.
T Consensus 268 Fml~dlid 275 (284)
T 2vso_E 268 FKLIDIKE 275 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 6
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=60.70 E-value=11 Score=44.45 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=107.5
Q ss_pred hhhhHhHhhhhhcCCcccHHHHHHHHHHHhh--hcchhhhhHHHHHhhcccCCchhHHHHHHHHHhCCh---h-------
Q 000087 831 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK---A------- 898 (2284)
Q Consensus 831 e~vqDKI~FIiNNlS~~Nle~K~~Elke~L~--~~y~~WFA~YLV~kRAsiEPNfH~LYl~fl~~l~~~---~------- 898 (2284)
+.+..+|.-++|-||++|++.=+.++.++-- ++-..=+. -+|.++|-.||+|=.+|.+|+..|... .
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi-~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~ 87 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVI-DLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHH-HHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccc
Confidence 5788999999999999999998888765311 11111122 357788999999999999999999751 1
Q ss_pred --HHHHHHH---HHHHHHHHHhc--ccccc-----cChHHH---------------HHHHhhhhhHhhhhhhcCcccccC
Q 000087 899 --LNREIVQ---ATYENCKVLLG--SELIK-----SSSEER---------------SLLKNLGSWLGKLTIGRNQVLRAR 951 (2284)
Q Consensus 899 --L~~~Vl~---~Ty~~i~~LL~--se~~~-----~ss~eR---------------slLKNLGsWLG~iTLarNkPI~~k 951 (2284)
+-+.+|+ +.|++...-.. .++.+ ..+.|| ..--|+-.++|-+-.-+=-+-+.=
T Consensus 88 ~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~ 167 (260)
T 1hu3_A 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHHHH
Confidence 2233332 23333211000 00000 112222 222356667777765321111100
Q ss_pred CCChhHHHHHHHhcCceEEEechhhhhccccCCCccccC-CCccHHHHHHHHHHHhcCCcccchhHHHHHHHHh
Q 000087 952 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQP-PNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1024 (2284)
Q Consensus 952 ~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkP-PNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K 1024 (2284)
.-.++.||- ..... -|=.+|++|..|...- .++ +.+..-.++.-|.++-+.+++---.+|=||.++.
T Consensus 168 ~~~l~~Ll~-~~~e~----~iE~l~~lL~tvG~~L-~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~d 235 (260)
T 1hu3_A 168 HDCVVKLLK-NHDEE----SLECLCRLLTTIGKDL-DFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVID 235 (260)
T ss_dssp HHHHHHHHH-SCSHH----HHHHHHHHHHHHHHHH-CCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHH----HHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 112333332 11111 3556788888885543 233 3367888899999988888888889999999875
No 7
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=29.33 E-value=1.3e+02 Score=40.99 Aligned_cols=207 Identities=19% Similarity=0.319 Sum_probs=111.4
Q ss_pred HHHHhhhhhhcCCC-------------C--CchHHHHhHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCCccccceeec
Q 000087 1961 NLLQFLEPFLRNAE-------------L--GVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILS 2025 (2284)
Q Consensus 1961 ~ll~Fl~~~L~~~~-------------l--~~~i~~lYkGtLRilLvLlHDfPEFL~~yh~~lc~~IP~~ciQLRNlILS 2025 (2284)
.+.+|.+.+|.|.+ + ..+-+.+-|+.+.=++=| .||-.+-+.+|+.+.+|
T Consensus 393 Rf~dwFShhLSNF~f~W~W~eW~~~~e~~~~~p~r~Fik~ll~k~~RL---------Sy~~rIk~~lP~~~~~l------ 457 (771)
T 1h2v_C 393 RFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRL---------SYHQRILDIVPPTFSAL------ 457 (771)
T ss_dssp HHHHHHHHHHTTTTTCCCGGGGGGGTTSCTTSHHHHHHHHHHHHHHHT---------SCHHHHHTTSCGGGGGG------
T ss_pred HHHHHHHHHHhcCCcCccHHHhHHhhcCCccCcHHHHHHHHHHHHHhh---------hhHHHHHHhCcHHHHhh------
Confidence 34556666666652 1 245666666666655532 67888889999998766
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcCcC-CCCccccchHHHHHHhhhhHHHHHHhccCCCCccHHHHHHHHccCCccccc-cC
Q 000087 2026 AFPRNMRLPDPSTPNLKIDLLPEIR-DPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAA-SA 2103 (2284)
Q Consensus 2026 A~P~~mrLPDPftp~Lkvd~LpEi~-~~P~i~~d~~~~L~~~~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~-~~ 2103 (2284)
+|. +..|+.|.+ .|-. ..|- . .+-+.+-++++.+.+.+.+...|++ +..+..+.. ..
T Consensus 458 -lp~------~p~p~f~y~--~e~~~~~p~------~-----~~a~~l~~~ir~k~~~eei~~~l~~-i~~~~~~~~~~~ 516 (771)
T 1h2v_C 458 -CPS------NPTCIYKYG--DESSNSLPG------H-----SVALCLAVAFKSKATNDEIFSILKD-VPNPNQDDDDDE 516 (771)
T ss_dssp -SCC------CCCCCCTTS--TTSCTTSTT------H-----HHHHHHHHHHHTTCCHHHHHHHGGG-CC----------
T ss_pred -CCC------CCCCCceeC--CccccCCcc------h-----HHHHHHHHHHHccCCHHHHHHHHHh-chhccccccccc
Confidence 343 224455554 1211 1121 1 1234556667766665555544443 332211111 11
Q ss_pred CccccHhHHHHHHHHHHHHHHHhhhcccCCccccCCCCchhhhh-hhhHHHHHHHHHhccChhhHHHHHHHHHhhhcCCC
Q 000087 2104 GTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL-VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPN 2182 (2284)
Q Consensus 2104 G~~yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~-~s~~~~il~~L~~~ld~EgRY~ll~aiaNqLRYPN 2182 (2284)
+..+|.-.++ |-++++-.+.+|+- + + .|. .+-+.+.|..|+. +.|+|..+|.++.+--+.
T Consensus 517 ~~~~~~~~i~-----v~~q~ll~~GskS~----S----H--~~~~lery~~~lk~l~~--~~~~q~~il~~v~~~W~~-- 577 (771)
T 1h2v_C 517 GFSFNPLKIE-----VFVQTLLHLAAKSF----S----H--SFSALAKFHEVFKTLAE--SDEGKLHVLRVMFEVWRN-- 577 (771)
T ss_dssp ---CCHHHHH-----HHHHHHHHHSTTCH----H----H--HHHHHHHTHHHHHHHTS--SHHHHHHHHHHHHHHHTT--
T ss_pred ccccchHHHH-----HHHHHHHHhccchH----H----H--HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhc--
Confidence 3455644444 33455544444331 1 0 111 2336678888877 788999999999876654
Q ss_pred hhhHHHH---------------HHHHHHhhcccchhhHHHHHHHHHHHhccCCCCChHHHHHHHHHhhCC
Q 000087 2183 NHTHYFS---------------FVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNP 2237 (2284)
Q Consensus 2183 ~HT~~FS---------------~~lL~LF~~~~~~~IqEqItRVLLERlIv~rPHPWGLliTFiELikNp 2237 (2284)
|..+.. .++-++|++.. .+| -.++|.|-++-.-++-+++.
T Consensus 578 -~~q~~~ividkll~~~iv~p~~Vv~w~f~~~~---~~~-----------~~~~~~weil~~ti~kv~~r 632 (771)
T 1h2v_C 578 -HPQMIAVLVDKMIRTQIVDCAAVANWIFSSEL---SRD-----------FTRLFVWEILHSTIRKMNKH 632 (771)
T ss_dssp -CHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGG---TTT-----------TTSHHHHHHHHHHHHHHHHH
T ss_pred -CCceEehHHHHHHhcCCCCHHHHHHHHcCchh---hhH-----------HhhhhHHHHHHHHHHHHHHH
Confidence 444332 23455665432 111 25999999999999888865
No 8
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.06 E-value=2.5e+02 Score=30.71 Aligned_cols=89 Identities=10% Similarity=0.183 Sum_probs=68.0
Q ss_pred chhHHHHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHHhhhc
Q 000087 529 ADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQ 608 (2284)
Q Consensus 529 ~~dIE~Ean~yfqkmYs~eisI~~iv~~L~r~K~S~~~rdqdiFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFG~lI~~~ 608 (2284)
.+++++++++..+..|+.. .++|.+.-++.++... .-..+....|..-||. + ++|=..+++|+-.|.. +
T Consensus 6 ~ee~~kk~~~ii~EYf~~~-D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldr-----k--~~ere~~s~LL~~L~~-~ 74 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHG-DTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEG-----K--ASHREMTSKLLSDLCG-T 74 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTS-----C--HHHHHHHHHHHHHHBT-T
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHHHH-C
Confidence 4678889998888888864 6899999999988432 3344555556655663 2 4555569999999965 9
Q ss_pred ccchhHHHHHHHHHHHHhcC
Q 000087 609 LVTHLTLGIALRGVLDALRK 628 (2284)
Q Consensus 609 Lv~~~~L~iALr~ILeAlrk 628 (2284)
+++.-.+.-|+..+++.+-+
T Consensus 75 ~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 75 VMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp TBCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChh
Confidence 99999999999999988764
No 9
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.00 E-value=3.5e+02 Score=29.26 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHHhhhcc
Q 000087 530 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 609 (2284)
Q Consensus 530 ~dIE~Ean~yfqkmYs~eisI~~iv~~L~r~K~S~~~rdqdiFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFG~lI~~~L 609 (2284)
+++++++++..+..|+.. .++|.+.-++.++.. ..-.++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 6 eel~kki~~lL~EY~~~~-D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~------~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP--HFHHELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578899998888888864 689999999999753 223445555555555521 34666779999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000087 610 VTHLTLGIALRGVLDALRK 628 (2284)
Q Consensus 610 v~~~~L~iALr~ILeAlrk 628 (2284)
|+.-.+.-|+.-|++.+-+
T Consensus 77 is~~q~~~Gf~~vl~~ldD 95 (152)
T 2ion_A 77 ITIDQMKRGYERIYNEIPD 95 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhChH
Confidence 9999999999999988754
No 10
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.73 E-value=1.9e+02 Score=39.16 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=79.2
Q ss_pred CChhhhHhHhhhhhcCCc---ccHHHHHHHHHHHhhhc---chhhhhHHHHHhhcccCCchhHHHHHHHHHhCCh--hHH
Q 000087 829 PASEVQDKISFIINNISA---LNVEAKAKEFTEILKEQ---YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--ALN 900 (2284)
Q Consensus 829 Ppe~vqDKI~FIiNNlS~---~Nle~K~~Elke~L~~~---y~~WFA~YLV~kRAsiEPNfH~LYl~fl~~l~~~--~L~ 900 (2284)
|++++.++|-.+|-++.. +|+++.+.+|...|.++ +-.-|+.- +++=+.-.|.+-.+|.-++--+|.+ ++=
T Consensus 4 ~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~-l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G 82 (771)
T 1h2v_C 4 DANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRL-LCTVARLLPEKLTIYTTLVGLLNARNYNFG 82 (771)
T ss_dssp ------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHHCGGGHHHHHHHHHHHHTTCHHHH
T ss_pred CcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHhCCCcchHHHHHHHHHHcCChhHH
Confidence 567889999999999988 99999999999999754 44455554 4567899999999999999999865 688
Q ss_pred HHHHHHHHHHHHHHhcccccccChHHHHHHHhhhhhHhhhhh
Q 000087 901 REIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTI 942 (2284)
Q Consensus 901 ~~Vl~~Ty~~i~~LL~se~~~~ss~eRslLKNLGsWLG~iTL 942 (2284)
+++++.+..+.+.-|+.. +....|++-.+|+.+.=
T Consensus 83 ~~lv~~l~~~f~~~l~~~-------~~~~~k~~lrFLa~L~n 117 (771)
T 1h2v_C 83 GEFVEAMIRQLKESLKAN-------NYNEAVYLVRFLSDLVN 117 (771)
T ss_dssp HHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-------ChHHHHHHHHHHHHhcc
Confidence 889998888888887752 44566666666666643
Done!