Citrus Sinensis ID: 000088
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2277 | 2.2.26 [Sep-21-2011] | |||||||
| H3K2Y6 | 2235 | Mediator of RNA polymeras | yes | no | 0.967 | 0.986 | 0.604 | 0.0 | |
| Q54U49 | 2731 | Putative mediator of RNA | yes | no | 0.111 | 0.093 | 0.260 | 1e-16 | |
| A1CJ92 | 1591 | Mediator of RNA polymeras | N/A | no | 0.076 | 0.109 | 0.256 | 1e-08 | |
| Q0CBX9 | 1583 | Mediator of RNA polymeras | N/A | no | 0.090 | 0.130 | 0.236 | 3e-08 | |
| Q4WWL0 | 1617 | Mediator of RNA polymeras | yes | no | 0.088 | 0.124 | 0.238 | 8e-08 | |
| A1D887 | 1612 | Mediator of RNA polymeras | N/A | no | 0.076 | 0.108 | 0.241 | 1e-07 | |
| Q2U513 | 1594 | Mediator of RNA polymeras | no | no | 0.076 | 0.109 | 0.236 | 2e-07 | |
| P25648 | 1427 | Mediator of RNA polymeras | yes | no | 0.086 | 0.137 | 0.242 | 3e-07 | |
| Q5B3Y9 | 1582 | Mediator of RNA polymeras | no | no | 0.090 | 0.130 | 0.232 | 4e-07 | |
| Q1EAK2 | 1554 | Mediator of RNA polymeras | N/A | no | 0.095 | 0.140 | 0.236 | 4e-07 |
| >sp|H3K2Y6|MED12_ARATH Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis thaliana GN=MED12 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2638 bits (6838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1395/2308 (60%), Positives = 1718/2308 (74%), Gaps = 104/2308 (4%)
Query: 1 MQRYHPTSCTSAVNNSAISGTSARDATRADSSSLPANFSINSRRSTQLTPYKLKCDKESL 60
MQRYH +CTSAVNNSAI G SARD+ RADSSS+ N+S+NSRR LTPYKLKC+K+ L
Sbjct: 1 MQRYHAANCTSAVNNSAIGGASARDSGRADSSSI-GNYSLNSRRPPPLTPYKLKCEKDGL 59
Query: 61 NSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCR 120
NSRLGPPDFHP T N PEE LT+EYVQ GYKETV+GL+E EI L+Q TF+KPVV KC+
Sbjct: 60 NSRLGPPDFHPPTSNSPEENLTKEYVQFGYKETVDGLKESEEIILSQVHTFSKPVVHKCK 119
Query: 121 EAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIEGLSQQ 180
EA+RKCLRAINESRA KRKAGQVYGVPLS SLL KPG FPEQR CGEE +K+WIE LSQQ
Sbjct: 120 EAVRKCLRAINESRALKRKAGQVYGVPLSGSLLCKPG-FPEQRSCGEETKKRWIESLSQQ 178
Query: 181 HKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDK 240
HKRLRSLAD++P GYR+++LFEVLIRNNVPLLRATWFIKVTYLNQVR A SG DK
Sbjct: 179 HKRLRSLADNIP-GYRRKTLFEVLIRNNVPLLRATWFIKVTYLNQVRPSPAAISSGTPDK 237
Query: 241 IQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDPAAVIN 300
Q SR E WTKDVI+YLQ+LLDE SRN+S Q +RDRSPQ LYTGS Q+ S + +
Sbjct: 238 TQASRCEQWTKDVIEYLQYLLDELLSRNSSFPAQQTRDRSPQMLYTGSMQKNSPASTSLY 297
Query: 301 SEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDKELLEILQLVLPIIYGVLE 360
EE SLHFKWWYMVRL+QWH AEGLL P+ I++WVL L++KE+ EILQL+LPI+YGVLE
Sbjct: 298 GEETSLHFKWWYMVRLLQWHHAEGLLFPNLIVDWVLKLLQEKEIFEILQLLLPIVYGVLE 357
Query: 361 TVVSSQTYVRSLVGIATHFIREPSPGGSDLVDNSRRAYTISALAEMLRYLILAVPDTFVA 420
++V SQTYV+SLV IA FI+EP+PGGSDLVDNSRRAYT+SAL EM+RYL+LA PDTFVA
Sbjct: 358 SIVLSQTYVQSLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSALIEMVRYLVLAAPDTFVA 417
Query: 421 LDCFPLPSCVVSYAANDGNFVSKASEDVGKMKNYSTDAICVFRGKAVDAQYQSLSFDNVI 480
D FPLP V + ND ++ SKA E++ K+++ S + F+G+ V ++++ LSFD I
Sbjct: 418 SDFFPLPPSVAACGPNDVSYTSKAYENLEKLRSNSAEISAQFQGRGVLSRFEFLSFDYTI 477
Query: 481 SAIQRRADNLAKDASPGYPGHSVAKAVQALDKALLQGDIREAYKHLFEDLCDAALDESWI 540
S IQR AD+LAK AS GYP H+VAKAVQALDKAL GDIR AY +LFEDLC+ A+DE+WI
Sbjct: 478 STIQRSADDLAKIASAGYPQHNVAKAVQALDKALSDGDIRAAYSYLFEDLCNGAVDEAWI 537
Query: 541 AEVSPCLRSSLKWIGTVSLSSVCSVFFICEWATCDFRDFRTVPPHGMKFTGRKDFSQIYV 600
+VSPCLRSSL+WIG +S S VCSVFF+ EWATCDFRDFR P +KF+GRKD SQ+Y+
Sbjct: 538 TDVSPCLRSSLRWIGAISTSFVCSVFFLIEWATCDFRDFRAGVPKDIKFSGRKDCSQVYL 597
Query: 601 AIRLLKQKIRDLHTPPRRKSESTLGIIDNLAKGSRQRNNYANRNFQGNGYEIKNNANRLD 660
I+LLKQKI LG KG RNN+ ++
Sbjct: 598 VIQLLKQKI--------------LGGEFTARKGKNCRNNFL-------------GVSKPS 630
Query: 661 GLRINSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFIMELVRAGIFYPQAYVRQL 720
G S D FE+PGPLHDIIVCWIDQHE+HK G KR+Q + EL+R+GIF P AYVRQL
Sbjct: 631 G----SMDAFESPGPLHDIIVCWIDQHEVHK-GGAKRLQLLVFELIRSGIFNPIAYVRQL 685
Query: 721 MVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEARIAEGSQLSEAIHVYSNERR 778
+VSG++D+ +D RR RHHRILK LPG F+ LEEA++ G +LSEA+ YSNERR
Sbjct: 686 IVSGMIDVIQPAVDPERRMRHHRILKQLPGCFVHETLEEAQLFGGDKLSEAVRTYSNERR 745
Query: 779 LVLHELLFDQSIYVN---VAAQNQKRHMAGGRDGASPSLADQWKTIQPTTGISSGRSGKS 835
L+L ELL ++ Y N ++ Q K+ P + + + KS
Sbjct: 746 LLLRELLVEKGKYWNNLVLSDQKSKKISTSLSSVIFPRACN-----AKSNSKGPRKHTKS 800
Query: 836 DADIEELKASIAVILQLPSSSATSADSGLDESQGSVKRSLGAVSSKMDLSEGTPGCEDCK 895
DI ELK I+ +LQ P S DE Q SVKRS G+V SKMD E TPGCEDC+
Sbjct: 801 SVDIRELKERISALLQFPGMSCGVETPVRDEFQNSVKRSSGSVYSKMDQPEATPGCEDCR 860
Query: 896 RVKRQKLCEDRSSVLQISSPIHSDDEDLWWVRKGPKPLE-SYKADPPLKSTKQVSRGRQK 954
R KR K+ +++SS Q +SPI SD+ED WW++KG K +E S K DP ++ TKQV RGRQK
Sbjct: 861 RAKRPKMNDEKSSCYQGNSPIASDEEDNWWIKKGSKTVESSLKVDPQIEITKQVPRGRQK 920
Query: 955 TVRRTQSLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGETLKSMDGVRTACYGDI 1014
R+TQSLAQL AARIEGSQGASTSHVCDNK SCPHH GVEGE K +D RT+ D+
Sbjct: 921 MARKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGENQKVVDVFRTSTPVDM 980
Query: 1015 VSIGKALKKLRYVEKRTVTVWLISIARQHIEEAEKTAAKVGQFNRSFVPVDGRISGRWRL 1074
VS+G +LK+L++V+KR++ VWL + RQ +EE +K++ +VGQFNR PV+ + + RW+L
Sbjct: 981 VSVGNSLKQLQFVDKRSIAVWLTTAVRQLVEEPQKSSVRVGQFNRG-APVEEKNTIRWKL 1039
Query: 1075 SEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRNILMLSRNAENHACGV 1134
DEL +IL+ +D+ DLVSA KFLLWLLPK ++PS + GRN++ + RN EN+ C +
Sbjct: 1040 GADELYSILFLLDISLDLVSAVKFLLWLLPKANSTPSFAVQGGRNLVTVPRNVENNMCEI 1099
Query: 1135 GEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSGSAAYGYARYLLKKYG 1194
GEA L+SSLRRYENI+++ DL+PEA++A M+RAA +M+SNG++SGSAA Y RY+LK+YG
Sbjct: 1100 GEAILVSSLRRYENILLSADLVPEAMTALMNRAASLMSSNGKISGSAALVYTRYILKRYG 1159
Query: 1195 NMASVIEWEKNFKATCDKRLLSELESGRSLDGELGLPLGVPAGIEDPDDYLRQKIS--GG 1252
++ SV+EW NFKAT +K+LLSEL+ RS +GE G PLGVPAG+++PDDYLR+KIS G
Sbjct: 1160 SLPSVVEWHNNFKATSEKKLLSELDHTRSGNGEYGNPLGVPAGVDNPDDYLRKKISIGGA 1219
Query: 1253 QLSRVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKSDDESQIAQQIIIGLM 1312
+ SRVGLSMRDV+ RH+EEA HY +KL G+ + +K+DD Q+AQQI++GLM
Sbjct: 1220 RPSRVGLSMRDVLQRHVEEATHYL----KKLIGTGTMKASLAEKNDDGYQVAQQIVVGLM 1275
Query: 1313 DCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNYQNYASTTGSLSFARR 1372
DC RQTGGAAQEGDPSL+SSAVSAI+ +V ++ +I DF+ G+ YQN+ S S + AR
Sbjct: 1276 DCIRQTGGAAQEGDPSLVSSAVSAIINSVGLSVARITDFSLGNIYQNHPSGVDSSNIARY 1335
Query: 1373 ILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKAARSQFQSSPEAHDPN 1432
ILRI+ITCLCLLKEALGERQSRVFEIALATE+S AL VF P K +R Q Q SPE++D N
Sbjct: 1336 ILRIHITCLCLLKEALGERQSRVFEIALATESSTALTGVFAPVKGSRGQHQLSPESYDSN 1395
Query: 1433 ANMSN-DILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMVTVFRLKEGLDVIQF 1491
AN S D+ N + K+A R +K+TAA+SALV+G++ HGV +LER+V + RLK+ LD +QF
Sbjct: 1396 ANNSTIDMSNGTGKMALSRATKITAAVSALVIGSITHGVITLERIVGLLRLKDYLDFVQF 1455
Query: 1492 VRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGLVVEFLGEPSIVALSR 1551
VR TKS+SNGSARS+G K+++ IEV+VHWFRLLVGNC+TVS+GLV+E +GE S+VA+SR
Sbjct: 1456 VRRTKSSSNGSARSMGASKVESPIEVYVHWFRLLVGNCKTVSEGLVLELVGESSVVAISR 1515
Query: 1552 MQRMLPLSLVFPPAYLIFAFVLWRPFI--LNNSLAVREDIHQMYQSLTMAINDAIRHLPF 1609
MQRMLPL LVFPPAY I AFVLWRPF+ N++ +V ED H++YQSLTMA +D I+HLPF
Sbjct: 1516 MQRMLPLKLVFPPAYSIIAFVLWRPFVSNSNSNSSVHEDTHRLYQSLTMAFHDVIKHLPF 1575
Query: 1610 RDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPLRARLFLNAIIDCKMP 1669
RDVC RD QG Y L+ ADSTDAEFA++ E +GLD+ LKS+AF PLRARLFLN++IDCK+P
Sbjct: 1576 RDVCFRDTQGLYELIVADSTDAEFASVFESHGLDMHLKSVAFAPLRARLFLNSLIDCKVP 1635
Query: 1670 SSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKFHWQWVELRLLLNEQA 1729
SS + E G +E+K+ N KL+DKLV VLD LQPAKFHWQWVELRLLLNEQA
Sbjct: 1636 SSGYSHE------GVSEAKNRHQGNGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQA 1689
Query: 1730 LIDRLENHEMSLAEAIRSLSPSPEKAAASENENNFIEIILTRLLVRPDAAPLFSELVHLF 1789
L ++LENH+M L +AIRS P+ EK ASENE NFI+I+LTRLLVRPDA PLFSE+VHLF
Sbjct: 1690 LAEKLENHDMPLTDAIRSSCPTSEKPDASENEKNFIQILLTRLLVRPDAVPLFSEVVHLF 1749
Query: 1790 GRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKAQFWKPWGWVNSGFGP 1849
GRS+EDSML QA+WFL G DVLFGRKTIRQ+L+ + ESKGL TK QFWKPWGW NS
Sbjct: 1750 GRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCNSSSSD 1809
Query: 1850 GLN---RGDKKKLEATSLEEGEVVEEGIDSKRHGKGSNP-LFDAEGTSIGQQHVTERAFI 1905
+ G K+K E TS+EEGEV+EEG S+ K P + D S+G TERAF+
Sbjct: 1810 HITANKAGKKRKFEITSIEEGEVIEEGSGSR---KVLLPRVLDENSPSVGYGITTERAFV 1866
Query: 1906 ELVLPCIDQSSDDSRNTFANDLIKQLNNIEQQISAVTR---GANKLTGSVPSGIEVPSNK 1962
+LVLPCIDQSSD+SR+TF N+L++Q +NIEQQ+S+VT +NK G+ SG E+ SNK
Sbjct: 1867 QLVLPCIDQSSDESRSTFVNELVRQFSNIEQQLSSVTNRSTTSNKQMGTASSGSEISSNK 1926
Query: 1963 GSNRKSIRGGSPGLARRLAA-TADPA-PPSPAALRASMSLRLQFLLRLLPLIYTDGEPSG 2020
GS RK +RGGSP LARR +A T D + PPSPAALRASMSLRLQFLLRLLP+I GEPS
Sbjct: 1927 GSTRKGLRGGSPSLARRSSANTTDTSPPPSPAALRASMSLRLQFLLRLLPVIC--GEPSF 1984
Query: 2021 RNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQ---SKREVESLPEASSVPSADFSGE 2077
+N R+ LAS I+RLLGSRVV+ED Y + SP+ SK E ES + SS+ AD S E
Sbjct: 1985 KNTRHALASTIVRLLGSRVVYED-----YAVCSPRSELSKAETESTIDPSSM--ADLSSE 2037
Query: 2078 SLFDRLLLVLYGLLSSCQPSWLRPKPAFKSSNNTSKDSSGFDREIAESLQNDLDHMQLPD 2137
LFDRLL VL+GLLS+ QP WL+P+P SSN +SKD + FDR+ AESLQN+L MQLPD
Sbjct: 2038 VLFDRLLFVLHGLLSNHQPKWLKPRP---SSNESSKDFTLFDRDAAESLQNELSRMQLPD 2094
Query: 2138 TVRWRIQAAIPILLPSVRCSLTCQPPSVPVAALASLQPSISVSGASPGNLNLPQRNPVPL 2197
T+RWRIQAA+PILLPS+RCSL+CQP SVP AL +QPS S + A QRN +
Sbjct: 2095 TIRWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPSGSTAAAGTN-----QRNSPAI 2149
Query: 2198 ARSATNT--GKSKPIPL----QQDSDME--IDPWTLLEDGAGSGPSSSNTAAIGSGDQAN 2249
++S T GK KP L QQ++D +DPWTLLED G+ S++ A S D AN
Sbjct: 2150 SKSGTAAAQGKLKPTMLAPHQQQEADNTDVVDPWTLLED--GTSSGLSSSNASNSSDMAN 2207
Query: 2250 LQAASWLKGAIRVRRTDLTYIGAVDDDS 2277
L+A WLKGA+RVRRTDLTY+G+VDDDS
Sbjct: 2208 LRATCWLKGAVRVRRTDLTYVGSVDDDS 2235
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Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Flowering regulator which suppresses FLC expression, promotes FT and TSF expression and up-regulates SOC1 and FUL mainly in an FT-dependent manner under long-day conditions. Involved in diverse developmental aspects through gene regulation and modulation of the auxin response. Acts closely together with MAB13. Involved in the regulation of embryo patterning and cotyledon organogenesis by transiently repressing a transcriptional program that interferes with this process. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54U49|MED12_DICDI Putative mediator of RNA polymerase II transcription subunit 12 OS=Dictyostelium discoideum GN=med12 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|A1CJ92|SRB8_ASPCL Mediator of RNA polymerase II transcription subunit 12 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=srb8 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q0CBX9|SRB8_ASPTN Mediator of RNA polymerase II transcription subunit 12 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=srb8 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription subunit 12 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=srb8 PE=3 SV=2 | Back alignment and function description |
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| >sp|A1D887|SRB8_NEOFI Mediator of RNA polymerase II transcription subunit 12 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=srb8 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2U513|SRB8_ASPOR Mediator of RNA polymerase II transcription subunit 12 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=srb8 PE=3 SV=2 | Back alignment and function description |
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| >sp|P25648|SRB8_YEAST Mediator of RNA polymerase II transcription subunit 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRB8 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5B3Y9|SRB8_EMENI Mediator of RNA polymerase II transcription subunit 12 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=srb8 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|Q1EAK2|SRB8_COCIM Mediator of RNA polymerase II transcription subunit 12 OS=Coccidioides immitis (strain RS) GN=SRB8 PE=3 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2277 | ||||||
| 359489621 | 2272 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.997 | 0.727 | 0.0 | |
| 255541598 | 2264 | CRP, putative [Ricinus communis] gi|2235 | 0.991 | 0.996 | 0.712 | 0.0 | |
| 224067896 | 2219 | predicted protein [Populus trichocarpa] | 0.967 | 0.992 | 0.702 | 0.0 | |
| 356568392 | 2279 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.990 | 0.657 | 0.0 | |
| 449432154 | 2254 | PREDICTED: mediator of RNA polymerase II | 0.987 | 0.997 | 0.647 | 0.0 | |
| 449480191 | 2254 | PREDICTED: mediator of RNA polymerase II | 0.987 | 0.997 | 0.646 | 0.0 | |
| 356522612 | 2235 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.991 | 0.645 | 0.0 | |
| 356506220 | 2240 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.987 | 0.645 | 0.0 | |
| 357507349 | 2270 | Mediator of RNA polymerase II transcript | 0.986 | 0.989 | 0.639 | 0.0 | |
| 395406780 | 2235 | RecName: Full=Mediator of RNA polymerase | 0.967 | 0.986 | 0.604 | 0.0 |
| >gi|359489621|ref|XP_002274479.2| PREDICTED: uncharacterized protein LOC100263628 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3299 bits (8555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1660/2282 (72%), Positives = 1925/2282 (84%), Gaps = 15/2282 (0%)
Query: 1 MQRYHPTSCTSAVNNSAISGTSARDATRADSSSLPANFSINSRRSTQLTPYKLKCDKESL 60
MQRYH +C SAVN++AI G SARD+ RADSSSL ANFS+NSRR +QLTPYKLKCDKESL
Sbjct: 1 MQRYHAPNCNSAVNSNAIGGPSARDSARADSSSLSANFSLNSRRQSQLTPYKLKCDKESL 60
Query: 61 NSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCR 120
NSRLGPPDFHPQT CPEETLT+EYVQ+GY+ETV GLE+ REI+LTQ Q F+KP VLKC+
Sbjct: 61 NSRLGPPDFHPQTSTCPEETLTQEYVQHGYRETVVGLEDAREIALTQIQAFSKPTVLKCK 120
Query: 121 EAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIEGLSQQ 180
EAIRK LRAINESRAQKRKAGQVYGVPLS SLLTKP VFPEQRPCGE+FRKKWIEGLSQ
Sbjct: 121 EAIRKRLRAINESRAQKRKAGQVYGVPLSGSLLTKPCVFPEQRPCGEDFRKKWIEGLSQH 180
Query: 181 HKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDK 240
HKRLRSLADHVPHG+RK++LFEVLIRNNVPLLRATWFIKVTYLNQVR SA+ SG+ DK
Sbjct: 181 HKRLRSLADHVPHGFRKKNLFEVLIRNNVPLLRATWFIKVTYLNQVRPASASISSGSPDK 240
Query: 241 IQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDPAAVIN 300
IQLSRTE+WTKDVIDYLQ LL+EFFSRNNSHSTQ+SRD+S Q LY GS Q +SDP + ++
Sbjct: 241 IQLSRTELWTKDVIDYLQGLLEEFFSRNNSHSTQHSRDKSQQILYAGSIQHKSDPVSGLD 300
Query: 301 SEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDKELLEILQLVLPIIYGVLE 360
SEEPSLHFKWWY+VR++QWH AEGL+LPS II+W L QL+DKELLEILQL+LPIIYGV+E
Sbjct: 301 SEEPSLHFKWWYVVRILQWHHAEGLILPSLIIDWALRQLQDKELLEILQLLLPIIYGVIE 360
Query: 361 TVVSSQTYVRSLVGIATHFIREPSPGGSDLVDNSRRAYTISALAEMLRYLILAVPDTFVA 420
TVV SQTYVR+LVG+A FI+EPSPGGSDLVDNSRRAYT SAL EMLR+LILAVPDTFVA
Sbjct: 361 TVVLSQTYVRTLVGVAVRFIKEPSPGGSDLVDNSRRAYTSSALVEMLRFLILAVPDTFVA 420
Query: 421 LDCFPLPSCVVSYAANDGNFVSKASEDVGKMKNYSTDAICVFRGKAVDAQYQSLSFDNVI 480
LDCFPLP CVVS+ ANDG+F++K SED K+KN + V R K +D QY SLSFD+++
Sbjct: 421 LDCFPLPPCVVSHVANDGSFLTKVSEDTIKIKNRPAEVPTVLRDKVLDGQYPSLSFDHIV 480
Query: 481 SAIQRRADNLAKDASPGYPGHSVAKAVQALDKALLQGDIREAYKHLFEDLCDAALDESWI 540
S+IQ+RADNLAK ASPGYP HS AKAVQALDKAL+ GD+R AYK LF+D CD A++E WI
Sbjct: 481 SSIQKRADNLAKAASPGYPCHSEAKAVQALDKALVDGDVRGAYKFLFDDHCDGAVNEGWI 540
Query: 541 AEVSPCLRSSLKWIGTVSLSSVCSVFFICEWATCDFRDFRTVPPHGMKFTGRKDFSQIYV 600
AEVSPCLRSSLKWIGTVS S VCSVFF+CEWATCDFRDFRT PPH MKFTGRKDFSQ+Y+
Sbjct: 541 AEVSPCLRSSLKWIGTVSSSLVCSVFFLCEWATCDFRDFRTAPPHDMKFTGRKDFSQVYI 600
Query: 601 AIRLLKQKIRDLHTPPRRKSESTLGIIDNLAKGSRQRNNYANRNFQGNGYEIKNNANRLD 660
AIRLLK K+RD+ P K+ ST G I+ LAKGS Q NN + R N YE KNN +D
Sbjct: 601 AIRLLKLKLRDVQNPGCCKNNSTAG-INTLAKGSSQPNNNSGRISVVNAYENKNNLKNMD 659
Query: 661 GLRINSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFIMELVRAGIFYPQAYVRQL 720
I+S DIF++PGPLHDIIVCWIDQHE HK EG KR+Q IMEL R+GIFYPQ YVRQL
Sbjct: 660 RASIDSLDIFQSPGPLHDIIVCWIDQHEAHKGEGFKRLQLLIMELARSGIFYPQVYVRQL 719
Query: 721 MVSGILDMNG--LDLNRRRRHHRILKVLPGLFLRVALEEARIAEGSQLSEAIHVYSNERR 778
+VSGI+D G +DL+RR+RH+RILK LPG ++R ALE A++ E LS+AI +YSNERR
Sbjct: 720 IVSGIMDRYGPIVDLDRRKRHYRILKQLPGSYMRDALEGAQVTEVGLLSDAILIYSNERR 779
Query: 779 LVLHELLFDQSIYVNVAAQNQKR--HM-AGGRDGASPSLADQWKTIQPTTGISSGRSGKS 835
LVL LL+DQ N+A+ + +R H+ RDGASP+ DQW+T+Q + + SG++ KS
Sbjct: 780 LVLQGLLWDQYKSKNIASISSRRPKHLPVSARDGASPASVDQWRTLQSASNMLSGKTAKS 839
Query: 836 DADIEELKASIAVILQLPSSSATSADSGLDESQGSVKRSLGAVSSKMDLSEGTPGCEDCK 895
+ADIEELKA+I+ +LQLP+SS TSAD+GLDESQGSVK+S+G+ +KMDL EGTPGCE+C+
Sbjct: 840 NADIEELKAAISGLLQLPNSSTTSADTGLDESQGSVKKSVGSNCNKMDLVEGTPGCEECR 899
Query: 896 RVKRQKLCEDRSSVLQISSPIHSDDEDLWWVRKGPKPLESYKADPPLKSTKQVSRGRQKT 955
R KRQKL EDRSS Q SP SDDED WWVRKGPK ES+K DPPLK+ KQ SRGRQK
Sbjct: 900 RAKRQKLSEDRSS-YQGHSPNPSDDEDTWWVRKGPKSSESFKIDPPLKAAKQTSRGRQKI 958
Query: 956 VRRTQSLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGETLKSMDGVRTACYGDIV 1015
VR+TQSLAQLAAARIEGSQGASTSHVCDN+ SCPHH+TG+EGE KS+D V+ DIV
Sbjct: 959 VRKTQSLAQLAAARIEGSQGASTSHVCDNRISCPHHRTGMEGEAPKSIDEVKATHCSDIV 1018
Query: 1016 SIGKALKKLRYVEKRTVTVWLISIARQHIEEAEKTAAKVGQFNRSFVPVDGRISGRWRLS 1075
SIGKALK+LR++EKRT+T+WL ++ RQ +EE EKT AK GQF+R F VD R S RW+
Sbjct: 1019 SIGKALKQLRFMEKRTITMWLATVVRQFVEENEKTVAKGGQFSRPF-SVDDRSSLRWKFG 1077
Query: 1076 EDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRNILMLSRNAENHACGVG 1135
E+ELS+ LY MDVC+DLVSAAKFLLWLLPKVL++PSSTI+ GR+I+ML RN E+HAC VG
Sbjct: 1078 EEELSSTLYLMDVCNDLVSAAKFLLWLLPKVLSNPSSTIHGGRSIMMLPRNVESHACEVG 1137
Query: 1136 EAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSGSAAYGYARYLLKKYGN 1195
EA+LLSS+RRYENI++ATDLIPE LSAT+ RAA VMASNGRVSGS A YARYLLKKYGN
Sbjct: 1138 EAYLLSSIRRYENILVATDLIPETLSATVLRAAAVMASNGRVSGSLALVYARYLLKKYGN 1197
Query: 1196 MASVIEWEKNFKATCDKRLLSELESGRSLDGELGLPLGVPAGIEDPDDYLRQKISGGQLS 1255
++SVIEWE++FK+T DKRL+SELESGRSL+GE G PLGVPAG+ED D++ QKIS ++S
Sbjct: 1198 VSSVIEWERHFKSTGDKRLISELESGRSLEGEFGFPLGVPAGVEDLDEFFHQKISHTRVS 1257
Query: 1256 RVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKSDDESQIAQQIIIGLMDCF 1315
RVGLSM+D+V R++++A HY + KERKLFA +P+ PAI+K DD QIAQQI+I LM+C
Sbjct: 1258 RVGLSMKDIVQRNVDDALHYLFGKERKLFAPATPKAPAIEKWDDGYQIAQQIVIQLMECI 1317
Query: 1316 RQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNYQNYASTTGSLSFARRILR 1375
RQTGGAAQEGDPSL+SSAVSAIV NV P+M K+ DF+AG+NY N+ STT SL+FARRILR
Sbjct: 1318 RQTGGAAQEGDPSLVSSAVSAIVCNVGPSMAKLPDFSAGNNYLNFPSTTSSLNFARRILR 1377
Query: 1376 IYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKAARSQFQSSPEAHDPNANM 1435
I+ITCLCLLKEALGERQSRVFEIALA EAS ALA F P KA RSQFQ SPEAHD NA+M
Sbjct: 1378 IHITCLCLLKEALGERQSRVFEIALAAEASSALATAFAPVKAPRSQFQLSPEAHDSNASM 1437
Query: 1436 SNDILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMVTVFRLKEGLDVIQFVRST 1495
SN+ILN+S+K+ GR +K+ AA+SALV+GAV+HGV SLERMVTVFRLKEGLDVIQF+RST
Sbjct: 1438 SNEILNNSAKL--GRATKILAAVSALVIGAVIHGVISLERMVTVFRLKEGLDVIQFIRST 1495
Query: 1496 KSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGLVVEFLGEPSIVALSRMQRM 1555
+SNSNG+ RS+G FK+DNS+EV VHWFRLL+GNC+TV DGLVV+ +GEPSIVALSRMQR
Sbjct: 1496 RSNSNGNPRSLGAFKVDNSVEVCVHWFRLLIGNCKTVCDGLVVDLMGEPSIVALSRMQRT 1555
Query: 1556 LPLSLVFPPAYLIFAFVLWRPFILNNSLAVREDIHQMYQSLTMAINDAIRHLPFRDVCLR 1615
LPL+LVFPPAY IF+FV+WRPFILN ++ REDIHQ+YQSLT+AI+DAI+HLPFRDVC+R
Sbjct: 1556 LPLNLVFPPAYSIFSFVVWRPFILNANITNREDIHQLYQSLTLAISDAIKHLPFRDVCMR 1615
Query: 1616 DCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPLRARLFLNAIIDCKMPSSLFKP 1675
D GFY+LV AD++D+EFAAMLELNG DL L++MAFVPLRARLFLNAIIDCKMP++
Sbjct: 1616 DTHGFYDLVAADASDSEFAAMLELNGPDLHLRAMAFVPLRARLFLNAIIDCKMPNTSLTQ 1675
Query: 1676 EDFNRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKFHWQWVELRLLLNEQALIDRLE 1735
+D + VSGH ESK AENE KLLDKLVH+LD+LQPAKFHWQWVELRLLLNEQAL+++++
Sbjct: 1676 DDVSWVSGHAESKVPYAENETKLLDKLVHILDTLQPAKFHWQWVELRLLLNEQALVEKVD 1735
Query: 1736 NHEMSLAEAIRSLSPSPEKAAASENENNFIEIILTRLLVRPDAAPLFSELVHLFGRSLED 1795
NH++SLAEAI S+SP+PEKA ASENENNFI IILTRLL RP AA LFSE+VHLFGRSLED
Sbjct: 1736 NHDVSLAEAIHSMSPNPEKAVASENENNFILIILTRLLARPYAAALFSEVVHLFGRSLED 1795
Query: 1796 SMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKAQFWKPWGWVNSGFGPGLNRGD 1855
S LLQAKWFL G DVLFGRK+IRQRL+NIAESKGLSTK QFWKPWGW S P +GD
Sbjct: 1796 STLLQAKWFLVGQDVLFGRKSIRQRLINIAESKGLSTKVQFWKPWGWSYSSLDPVATKGD 1855
Query: 1856 KKKLEATSLEEGEVVEEGIDSKRHGKGSNPLFDAEGTSIGQQHVTERAFIELVLPCIDQS 1915
KKK E TSLEEGEVVEEG DSKR+ KGS + D +G ++ QQH TERA +ELVLPCIDQS
Sbjct: 1856 KKKFEVTSLEEGEVVEEGTDSKRYAKGSTQMSDFDGFNVSQQHATERALVELVLPCIDQS 1915
Query: 1916 SDDSRNTFANDLIKQLNNIEQQISAVTRGANKLTGSVPSGIEVPSNKGSNRKSIRGGSPG 1975
SDDSRN FA+DLIKQ++ IEQQI+ VTRG K G+V SG+E P+NKG+NRK +RGGSPG
Sbjct: 1916 SDDSRNAFASDLIKQMHIIEQQINTVTRGTTKQAGTVLSGVEGPANKGNNRKGMRGGSPG 1975
Query: 1976 LARRLAATADPAPPSPAALRASMSLRLQFLLRLLPLIYTDGEPSGRNMRYLLASVILRLL 2035
LARR AD APPSPAALRASM+LRLQFLLRLLP+I +GE S RNMR LASVILRLL
Sbjct: 1976 LARRPTGVADSAPPSPAALRASMALRLQFLLRLLPIICAEGEQS-RNMRQSLASVILRLL 2034
Query: 2036 GSRVVHEDADLSFYPMQSPQSKREVESLPEASSVPSADFSGESLFDRLLLVLYGLLSSCQ 2095
GSRVVHEDADLS Y QSP SKRE ESL EAS+ S D SGESLFDRLLLVL+GLLSSCQ
Sbjct: 2035 GSRVVHEDADLSLYSTQSPPSKREAESLMEASTAASLDLSGESLFDRLLLVLHGLLSSCQ 2094
Query: 2096 PSWLRPKPAFKSSNNTSKDSSGFDREIAESLQNDLDHMQLPDTVRWRIQAAIPILLPSVR 2155
PSWL+ K A KS+ + K+ SGFDRE AE+LQNDLD MQLPDT+RWRIQAA+PIL+PS R
Sbjct: 2095 PSWLKSKSASKSTTESIKEFSGFDREAAENLQNDLDCMQLPDTIRWRIQAAMPILVPSGR 2154
Query: 2156 CSLTCQPPSVPVAALASLQPSISVSGASPGNLNLPQRNPVPLARSATNTGKSKPIPLQQD 2215
CS++CQPPSV AA+ASLQPS+S PGN N QRN L R GK K +PLQQD
Sbjct: 2155 CSISCQPPSVSSAAVASLQPSLSFPAFHPGNTNQSQRNSSSLVR----PGKLKNMPLQQD 2210
Query: 2216 SDMEIDPWTLLEDGAGSGPSSSNTAAIGSGDQANLQAASWLKGAIRVRRTDLTYIGAVDD 2275
D+EIDPWTLLEDGAG+GPSS NTA IGSGD ANL+A+SWL+G +RVRRTDLTYIGAVDD
Sbjct: 2211 HDIEIDPWTLLEDGAGAGPSSGNTAVIGSGDHANLRASSWLRGTVRVRRTDLTYIGAVDD 2270
Query: 2276 DS 2277
DS
Sbjct: 2271 DS 2272
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541598|ref|XP_002511863.1| CRP, putative [Ricinus communis] gi|223549043|gb|EEF50532.1| CRP, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224067896|ref|XP_002302587.1| predicted protein [Populus trichocarpa] gi|222844313|gb|EEE81860.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356568392|ref|XP_003552395.1| PREDICTED: uncharacterized protein LOC100806985 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449432154|ref|XP_004133865.1| PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449480191|ref|XP_004155825.1| PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356522612|ref|XP_003529940.1| PREDICTED: uncharacterized protein LOC100782672 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356506220|ref|XP_003521885.1| PREDICTED: uncharacterized protein LOC100781696 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357507349|ref|XP_003623963.1| Mediator of RNA polymerase II transcription subunit [Medicago truncatula] gi|87240976|gb|ABD32834.1| 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula] gi|355498978|gb|AES80181.1| Mediator of RNA polymerase II transcription subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|395406780|sp|H3K2Y6.1|MED12_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 12; AltName: Full=Protein CENTER CITY; AltName: Full=Protein CRYPTIC PRECOCIOUS gi|374428817|dbj|BAL49816.1| cryptic precocious [Arabidopsis thaliana] gi|374428819|dbj|BAL49817.1| cryptic precocious splicing variant [Arabidopsis thaliana] gi|374428821|dbj|BAL49818.1| cryptic precocious [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2277 | ||||||
| TAIR|locus:2126056 | 2235 | CCT "CENTER CITY" [Arabidopsis | 0.699 | 0.712 | 0.562 | 0.0 | |
| DICTYBASE|DDB_G0281277 | 2731 | med12 "putative mediator compl | 0.093 | 0.077 | 0.282 | 1.6e-17 | |
| SGD|S000000677 | 1427 | SRB8 "Subunit of the RNA polym | 0.090 | 0.145 | 0.241 | 1.2e-05 | |
| UNIPROTKB|G4NLU5 | 1569 | MGG_02846 "Uncharacterized pro | 0.073 | 0.107 | 0.259 | 0.00015 | |
| UNIPROTKB|Q2KFT1 | 1690 | MGCH7_ch7g604 "Putative unchar | 0.091 | 0.123 | 0.256 | 0.00032 |
| TAIR|locus:2126056 CCT "CENTER CITY" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4480 (1582.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 929/1651 (56%), Positives = 1164/1651 (70%)
Query: 653 KNNANRLDGLR--INSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFIMELVRAGI 710
KN N G+ S D FE+PGPLHDIIVCWIDQHE+HK G KR+Q + EL+R+GI
Sbjct: 617 KNCRNNFLGVSKPSGSMDAFESPGPLHDIIVCWIDQHEVHKG-GAKRLQLLVFELIRSGI 675
Query: 711 FYPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEARIAEGSQLSE 768
F P AYVRQL+VSG++D+ +D RR RHHRILK LPG F+ LEEA++ G +LSE
Sbjct: 676 FNPIAYVRQLIVSGMIDVIQPAVDPERRMRHHRILKQLPGCFVHETLEEAQLFGGDKLSE 735
Query: 769 AIHVYSNERRLVLHELLFDQSIYVNVAAQNQKRHMAGGRDGASPSLADQWKTIQPTTGIS 828
A+ YSNERRL+L ELL ++ Y N + ++ +S + G
Sbjct: 736 AVRTYSNERRLLLRELLVEKGKYWNNLVLSDQKSKKISTSLSSVIFPRACNAKSNSKG-- 793
Query: 829 SGRSGKSDADIEELKASIAVILQLPSSSATSADSGLDESQGSVKRSLGAVSSKMDLSEGT 888
+ KS DI ELK I+ +LQ P S DE Q SVKRS G+V SKMD E T
Sbjct: 794 PRKHTKSSVDIRELKERISALLQFPGMSCGVETPVRDEFQNSVKRSSGSVYSKMDQPEAT 853
Query: 889 PGCEDCKRVKRQKLCEDRSSVLQISSPIHSDDEDLWWVRKGPKPLES-YKADPPLKSTKQ 947
PGCEDC+R KR K+ +++SS Q +SPI SD+ED WW++KG K +ES K DP ++ TKQ
Sbjct: 854 PGCEDCRRAKRPKMNDEKSSCYQGNSPIASDEEDNWWIKKGSKTVESSLKVDPQIEITKQ 913
Query: 948 VSRGRQKTVRRTQSLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGETLKSMDGVR 1007
V RGRQK R+TQSLAQL AARIEGSQGASTSHVCDNK SCPHH GVEGE K +D R
Sbjct: 914 VPRGRQKMARKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGENQKVVDVFR 973
Query: 1008 TACYGDIVSIGKALKKLRYVEKRTVTVWLISIARQHIEEAEKTAAKVGQFNRSFVPVDGR 1067
T+ D+VS+G +LK+L++V+KR++ VWL + RQ +EE +K++ +VGQFNR PV+ +
Sbjct: 974 TSTPVDMVSVGNSLKQLQFVDKRSIAVWLTTAVRQLVEEPQKSSVRVGQFNRG-APVEEK 1032
Query: 1068 ISGRWRLSEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRNILMLSRNA 1127
+ RW+L DEL +IL+ +D+ DLVSA KFLLWLLPK ++PS + GRN++ + RN
Sbjct: 1033 NTIRWKLGADELYSILFLLDISLDLVSAVKFLLWLLPKANSTPSFAVQGGRNLVTVPRNV 1092
Query: 1128 ENHACGVGEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSGSAAYGYAR 1187
EN+ C +GEA L+SSLRRYENI+++ DL+PEA++A M+RAA +M+SNG++SGSAA Y R
Sbjct: 1093 ENNMCEIGEAILVSSLRRYENILLSADLVPEAMTALMNRAASLMSSNGKISGSAALVYTR 1152
Query: 1188 YLLKKYGNMASVIEWEKNFKATCDKXXXXXXXXXXXXXXXXXXPLGVPAGIEDPDDYLRQ 1247
Y+LK+YG++ SV+EW NFKAT +K PLGVPAG+++PDDYLR+
Sbjct: 1153 YILKRYGSLPSVVEWHNNFKATSEKKLLSELDHTRSGNGEYGNPLGVPAGVDNPDDYLRK 1212
Query: 1248 KIS--GGQLSRVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKSDDESQIAQ 1305
KIS G + SRVGLSMRDV+ RH+EEA HY +KL G+ + +K+DD Q+AQ
Sbjct: 1213 KISIGGARPSRVGLSMRDVLQRHVEEATHYL----KKLIGTGTMKASLAEKNDDGYQVAQ 1268
Query: 1306 QIIIGLMDCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNYQNYASTTG 1365
QI++GLMDC RQTGGAAQEGDPSL+SSAVSAI+ +V ++ +I DF+ G+ YQN+ S
Sbjct: 1269 QIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSVGLSVARITDFSLGNIYQNHPSGVD 1328
Query: 1366 SLSFARRILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKAARSQFQSS 1425
S + AR ILRI+ITCLCLLKEALGERQSRVFEIALATE+S AL VF P K +R Q Q S
Sbjct: 1329 SSNIARYILRIHITCLCLLKEALGERQSRVFEIALATESSTALTGVFAPVKGSRGQHQLS 1388
Query: 1426 PEAHDPNANMSN-DILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMVTVFRLKE 1484
PE++D NAN S D+ N + K+A R +K+TAA+SALV+G++ HGV +LER+V + RLK+
Sbjct: 1389 PESYDSNANNSTIDMSNGTGKMALSRATKITAAVSALVIGSITHGVITLERIVGLLRLKD 1448
Query: 1485 GLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGLVVEFLGEP 1544
LD +QFVR TKS+SNGSARS+G K+++ IEV+VHWFRLLVGNC+TVS+GLV+E +GE
Sbjct: 1449 YLDFVQFVRRTKSSSNGSARSMGASKVESPIEVYVHWFRLLVGNCKTVSEGLVLELVGES 1508
Query: 1545 SIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFILN-NS-LAVREDIHQMYQSLTMAIND 1602
S+VA+SRMQRMLPL LVFPPAY I AFVLWRPF+ N NS +V ED H++YQSLTMA +D
Sbjct: 1509 SVVAISRMQRMLPLKLVFPPAYSIIAFVLWRPFVSNSNSNSSVHEDTHRLYQSLTMAFHD 1568
Query: 1603 AIRHLPFRDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPLRARLFLNA 1662
I+HLPFRDVC RD QG Y L+ ADSTDAEFA++ E +GLD+ LKS+AF PLRARLFLN+
Sbjct: 1569 VIKHLPFRDVCFRDTQGLYELIVADSTDAEFASVFESHGLDMHLKSVAFAPLRARLFLNS 1628
Query: 1663 IIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKFHWQWVELR 1722
+IDCK+PSS + E G +E+K+ N KL+DKLV VLD LQPAKFHWQWVELR
Sbjct: 1629 LIDCKVPSSGYSHE------GVSEAKNRHQGNGTKLVDKLVSVLDCLQPAKFHWQWVELR 1682
Query: 1723 LLLNEQALIDRLENHEMSLAEAIRSLSPSPEKAAASENENNFIEIILTRLLVRPDAAPLF 1782
LLLNEQAL ++LENH+M L +AIRS P+ EK ASENE NFI+I+LTRLLVRPDA PLF
Sbjct: 1683 LLLNEQALAEKLENHDMPLTDAIRSSCPTSEKPDASENEKNFIQILLTRLLVRPDAVPLF 1742
Query: 1783 SELVHLFGRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKAQFWKPWGW 1842
SE+VHLFGRS+EDSML QA+WFL G DVLFGRKTIRQ+L+ + ESKGL TK QFWKPWGW
Sbjct: 1743 SEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGW 1802
Query: 1843 VNSGFGPGL--NR-GDKKKLEATSLEEGEVVEEGIDSKRHGKGSNP-LFDAEGTSIGQQH 1898
NS + N+ G K+K E TS+EEGEV+EEG S+ K P + D S+G
Sbjct: 1803 CNSSSSDHITANKAGKKRKFEITSIEEGEVIEEGSGSR---KVLLPRVLDENSPSVGYGI 1859
Query: 1899 VTERAFIELVLPCIDQSSDDSRNTFANDLIKQLNNIEQQISAVTRGA---NKLTGSVPSG 1955
TERAF++LVLPCIDQSSD+SR+TF N+L++Q +NIEQQ+S+VT + NK G+ SG
Sbjct: 1860 TTERAFVQLVLPCIDQSSDESRSTFVNELVRQFSNIEQQLSSVTNRSTTSNKQMGTASSG 1919
Query: 1956 IEVPSNKGSNRKSIRGGSPGLARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYTD 2015
E+ SNKGS RK +RGGSP LARR
Sbjct: 1920 SEISSNKGSTRKGLRGGSPSLARRSSANTTDTSPPPSPAALRASMSLRLQFLLRLLPVIC 1979
Query: 2016 GEPSGRNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQS---KREVESLPEASSVPSA 2072
GEPS +N R+ LAS I+RLLGSRVV+ED Y + SP+S K E ES + SS+ A
Sbjct: 1980 GEPSFKNTRHALASTIVRLLGSRVVYED-----YAVCSPRSELSKAETESTIDPSSM--A 2032
Query: 2073 DFSGESXXXXXXXXXXXXXSSCQPSWLRPKPAFKSSNNTSKDSSGFDREIAESLQNDLDH 2132
D S E S+ QP WL+P+P SSN +SKD + FDR+ AESLQN+L
Sbjct: 2033 DLSSEVLFDRLLFVLHGLLSNHQPKWLKPRP---SSNESSKDFTLFDRDAAESLQNELSR 2089
Query: 2133 MQLPDTVRWRIQAAIPILLPSVRCSLTCQPPSVPVAALASLQPSISVSGASPGNLNLPQR 2192
MQLPDT+RWRIQAA+PILLPS+RCSL+CQP SVP AL +QPS S + A N P
Sbjct: 2090 MQLPDTIRWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPSGSTAAAGTNQRNSPA- 2148
Query: 2193 NPVPLARSATNTGKSKPIPL----QQDSDME--IDPWTLLEDGAGSGPSSSNTAAIGSGD 2246
+ + +A GK KP L QQ++D +DPWTLLEDG SG SSSN A S D
Sbjct: 2149 --ISKSGTAAAQGKLKPTMLAPHQQQEADNTDVVDPWTLLEDGTSSGLSSSN--ASNSSD 2204
Query: 2247 QANLQAASWLKGAIRVRRTDLTYIGAVDDDS 2277
ANL+A WLKGA+RVRRTDLTY+G+VDDDS
Sbjct: 2205 MANLRATCWLKGAVRVRRTDLTYVGSVDDDS 2235
|
|
| DICTYBASE|DDB_G0281277 med12 "putative mediator complex subunit 12" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| SGD|S000000677 SRB8 "Subunit of the RNA polymerase II mediator complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4NLU5 MGG_02846 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2KFT1 MGCH7_ch7g604 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| H3K2Y6 | MED12_ARATH | No assigned EC number | 0.6044 | 0.9679 | 0.9861 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2277 | |||
| pfam09497 | 64 | pfam09497, Med12, Transcription mediator complex s | 3e-20 |
| >gnl|CDD|192306 pfam09497, Med12, Transcription mediator complex subunit Med12 | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 3e-20
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 160 PEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIK 219
P + + R+ W++ L+ + L LA +PHG+RK+ LFE L NVPL RA W IK
Sbjct: 5 PPRVTLTDSKREAWLKDLANPNVPLSKLAKKIPHGFRKKELFEQLCNKNVPLDRAIWLIK 64
|
Med12 is a negative regulator of the Gli3-dependent sonic hedgehog signalling pathway via its interaction with Gli3 within the RNA polymerase II transcriptional Mediator. A complex is formed between Med12, Med13, CDK8 and CycC which is responsible for suppression of transcription. This subunit forms part of the Kinase section of Mediator. Length = 64 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2277 | |||
| KOG4522 | 1427 | consensus RNA polymerase II transcription mediator | 100.0 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 100.0 | |
| PF12145 | 480 | Med12-LCEWAV: Eukaryotic Mediator 12 subunit domai | 100.0 | |
| KOG4522 | 1427 | consensus RNA polymerase II transcription mediator | 99.92 | |
| PF09497 | 64 | Med12: Transcription mediator complex subunit Med1 | 99.86 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 99.0 |
| >KOG4522 consensus RNA polymerase II transcription mediator [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-217 Score=1924.18 Aligned_cols=1412 Identities=50% Similarity=0.758 Sum_probs=1259.2
Q ss_pred HHHHHHHhhcCCccccCCCCCCCcccccccccCcccccccchhhhcccccCccchhhhccccchhhcccccchhhHHHHH
Q 000088 405 EMLRYLILAVPDTFVALDCFPLPSCVVSYAANDGNFVSKASEDVGKMKNYSTDAICVFRGKAVDAQYQSLSFDNVISAIQ 484 (2277)
Q Consensus 405 ~LLQ~L~LacPDAFVpPD~WPlppsvLP~p~n~~~fl~kasee~~~lk~~~~E~~~~~Rskave~ry~~LSf~~si~sIQ 484 (2277)
.|.+++.++-|+ .-|.+|++|+. ++.....+. .++.+++.+++|+..-+++++|.. +..++|++....|+
T Consensus 3 n~~~r~~l~pP~---~~D~~Pl~pc~-----~d~s~~s~d-~~l~~l~s~~~~i~anF~~~gv~~-~pfl~fd~is~~~r 72 (1427)
T KOG4522|consen 3 NMVRRLVLAPPD---ASDFFPLPPCP-----NDVSYTSKD-YELEKLRSNSAEISANFQGRGVLS-FPFLSFDYISSTIR 72 (1427)
T ss_pred ccccccccCCCC---ccccCcCCCCC-----CchhhcCcc-ccHHHhhcchhhhhhhhhcccccc-ccccchhhhhhhhh
Confidence 456778888886 35667777752 333333333 347788888999999999999999 89999999999999
Q ss_pred HHhHhhhhccCCCCCCCcHhHHHHHhhhhhccCCHHHHHHHHhhhhhhhcccccchhccCccccccccccccccccccce
Q 000088 485 RRADNLAKDASPGYPGHSVAKAVQALDKALLQGDIREAYKHLFEDLCDAALDESWIAEVSPCLRSSLKWIGTVSLSSVCS 564 (2277)
Q Consensus 485 kRn~~Lak~anp~~~~~~~akvVQaLDkalssgDI~~aY~~lF~dl~d~~vsedwi~evSPcl~~sl~w~gtv~lsli~s 564 (2277)
+...++++.++-++|+|+..+.||+||++++++|++.+|..+|+++| +.+++.||.-++ +|+ +.|+|..++|++ +
T Consensus 73 ~Sv~~~~~~as~~l~Qh~~k~~v~~l~~~~s~~~~r~~~s~l~ep~~-gf~~p~rITl~~--~R~-~rWl~~lSts~v-s 147 (1427)
T KOG4522|consen 73 RSVDDLAKIASAGLPQHNVKKAVQALDKALSDGDIRAAYSYLFEPLC-GFVDPARITLVS--LRS-LRWLGALSTSFV-S 147 (1427)
T ss_pred hhhhhHHHHHhccchhhhHHHHHHHHHHHhhcccccccceeecCCcc-cCCCCceeeehh--hhH-HHHHHhhcccch-h
Confidence 99999999999899999999999999999999999999999999999 688999998888 665 999999999998 9
Q ss_pred eeeeeecccccCCCCCCCCCCCccccccCcchhHHHHHHHHHHHhh-hcCCCCCCCCCcccccccccccccccccccccc
Q 000088 565 VFFICEWATCDFRDFRTVPPHGMKFTGRKDFSQIYVAIRLLKQKIR-DLHTPPRRKSESTLGIIDNLAKGSRQRNNYANR 643 (2277)
Q Consensus 565 Vf~LCEWAtt~fR~~r~~~~~~~kftgRk~lsqVYiAvrLLk~K~~-ei~~~~r~k~~s~~~i~~~~~Kgs~~~~~~~~~ 643 (2277)
+++|.+|+.+.+|++|...|+++||. +++|.|+-|+|.++- |+.. ||...++|.
T Consensus 148 l~~lik~iphgl~~~~~i~~~~iKF~-----~p~~raIwlikc~~~~E~~s-----------------~~kk~r~n~--- 202 (1427)
T KOG4522|consen 148 LFFLIKWIPHGLRDFRAIVPKDIKFS-----SPVYRAIWLIKCKILGEFTS-----------------KGKKCRNNF--- 202 (1427)
T ss_pred HHHHHhhCCcccchhhhhhhhheeec-----chHHHHHHHHHHhHHHHHHh-----------------hhhhhcccc---
Confidence 99999999999999999999999995 789999999995543 3321 222334432
Q ss_pred cccCCcccccccccccccccccCCCccCCCCCccceeeecccccccccccccchhhhhHHHhhhcCCCChHHHHHHHHHh
Q 000088 644 NFQGNGYEIKNNANRLDGLRINSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFIMELVRAGIFYPQAYVRQLMVS 723 (2277)
Q Consensus 644 ~~~~~~~~~~~~s~~ld~~~~~ss~IfespgpLqDIIv~fLDq~~p~k~~~~k~L~~Lf~ELIRsGIFSv~aYVr~LIar 723 (2277)
+++||+ || |++|.||.|| ..+|-|++++|+|.|-+|+ |||.+
T Consensus 203 ------------~gs~Da--------~~-----~~~ik~WtD~------------~~~vle~~is~~~N~~ad~-q~i~s 244 (1427)
T KOG4522|consen 203 ------------LGSMDA--------FE-----HDIIKCWTDQ------------QLLVLELIISGIFNPIADV-QLIVS 244 (1427)
T ss_pred ------------cccchh--------hH-----HHHHHHhHHH------------HHHHHHHHHHHhcCcchhH-HHHHH
Confidence 234444 54 9999999888 6789999999999999999 78888
Q ss_pred CccCCCCCCcccccchhhHhhhCCCCchHHHHHHhhhccchhhHHHHHHHHhhhHhhhhcccccchhhhhhhcccccccc
Q 000088 724 GILDMNGLDLNRRRRHHRILKVLPGLFLRVALEEARIAEGSQLSEAIHVYSNERRLVLHELLFDQSIYVNVAAQNQKRHM 803 (2277)
Q Consensus 724 Gil~~~~~d~er~~rh~rlLkqLPg~~l~~~L~~a~i~e~~~l~e~~~~y~~eRrl~L~~~~~~~~~~~~~~~~~~~~~~ 803 (2277)
|..+.. ++||+||+++.+. |+||||++|+++..+... .+. ..
T Consensus 245 ~~~dv~-----------y~LKllg~c~~~e-------------------l~n~~~fllr~v~f~~g~----~d~----~~ 286 (1427)
T KOG4522|consen 245 GMIDVI-----------YILKLLGGCFVHE-------------------LSNERRFLLREVLFEKGK----SDQ----KS 286 (1427)
T ss_pred HHHHHH-----------HHHHHhhhhHHHH-------------------hcchhHhhhhheeeecCc----ccc----cc
Confidence 876543 8999999998765 999999999998877643 111 22
Q ss_pred CCCCCCCCCcccccccccccCCCCCCCCCCCCcccHHHHHHHHHHHhcCCCCCCCCCC-CCccccccccccccccccccc
Q 000088 804 AGGRDGASPSLADQWKTIQPTTGISSGRSGKSDADIEELKASIAVILQLPSSSATSAD-SGLDESQGSVKRSLGAVSSKM 882 (2277)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~k~~is~ll~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~ 882 (2277)
.+.+-..+++.+++.+++.+++ + .||.+. ||+++||+.+ ++-++ .-++|.+.|++++.++.|.+|
T Consensus 287 k~~Slh~~~v~~~~~c~~~sn~--p-~~~t~s----------~s~~~qFf~~-s~i~~t~v~~~~~~S~~~~s~~~yi~~ 352 (1427)
T KOG4522|consen 287 KKISLHLSSVIFPRACNAKSNS--P-RKHTKS----------ISALLQFFGM-SCIVETPVRDEFQNSVKRSSGSVYIKM 352 (1427)
T ss_pred cceeeeehhhccchhhccccCC--c-hhhccc----------hhhhccccch-hheehhhhhHHHhhhheeccCceeEec
Confidence 3445567888999999999887 3 567554 9999999998 77777 678999999999999999999
Q ss_pred ccCCCCCCchhhhhhhhhcccccCCCcee-ccCCCCCCCcccceeecCCCCCCc-cccCCCCCccccccccccchhhhhh
Q 000088 883 DLSEGTPGCEDCKRVKRQKLCEDRSSVLQ-ISSPIHSDDEDLWWVRKGPKPLES-YKADPPLKSTKQVSRGRQKTVRRTQ 960 (2277)
Q Consensus 883 d~~~~~~gce~c~r~krqkl~~~~~~~~q-~~~~~~sd~ed~wwv~k~~k~~e~-~k~~~~~k~~kq~~~~r~k~vrktq 960 (2277)
|..+.| +|+|+|+.|++++..++|| |.++|-++++|+||++|++|..++ +|++ ..+||+.||||++-||||
T Consensus 353 Dqp~n~----~~k~~~l~k~~s~~l~~~qe~n~eif~fpt~nW~i~Kp~~~~~~s~~~~---~~~~d~p~~~~l~s~~~e 425 (1427)
T KOG4522|consen 353 DQPENT----DCKRAKLPKMNSEKLSCYQEGNSEIFSFPTDNWWIKKPSKTVESSLKVD---EITKDVPRGRQLMSRKTE 425 (1427)
T ss_pred CCccch----hhHHHhhHHHHHHHHHHHHhcCcceeecccccccccCCeeEEEeecccc---chhhcccchHHHHHHHHH
Confidence 999998 9999999999999999999 999999999999999999998886 4666 679999999999999999
Q ss_pred hHHHHHHhcccCCCCCccccccCCCCCCCCCCCCCCCCccccccccccccccchHHHHHhhhcccccccchhHHHHHHHH
Q 000088 961 SLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGETLKSMDGVRTACYGDIVSIGKALKKLRYVEKRTVTVWLISIA 1040 (2277)
Q Consensus 961 slaqlaa~riegsqgastsh~c~~k~scphh~~~~~~~~~k~~d~~~~~~~~d~~~ig~~lk~lr~~e~r~~~~wl~~~v 1040 (2277)
||||..+|||||+|||||+|+|+|+||||||.++.+|+|++++|-+++.++.|++++|..+|+|.|..+|+|.+|+++.+
T Consensus 426 sl~~ns~ar~~~~~~ast~~f~l~iVsC~~fp~~~~g~n~~~~d~fkll~p~~~~pvy~~~~pL~~h~~~~~~~W~i~~~ 505 (1427)
T KOG4522|consen 426 SLAQNSAARIEGSQGASTSHFCLNIVSCPHFPPGVEGENQKVVDVFKLLTPVDMVPVYNSLKPLQFHDKRSIAVWLITAV 505 (1427)
T ss_pred HHhhhhhHHHhhcccccccceeeeEEecCCCCccccchhhhHHHHHHhcCcccccccccCccceeeeeehheeeeeechH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccccccccCCCcccceecCccchhhhhhhhhhchhHHHHHHHHHHhcccccCCCCCCccCCccc
Q 000088 1041 RQHIEEAEKTAAKVGQFNRSFVPVDGRISGRWRLSEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRNI 1120 (2277)
Q Consensus 1041 rql~e~~e~~~~k~~~~~~~~~~~~~~~~~rw~lg~del~~~ly~~d~~~dl~s~~~~llwll~k~~~~~~~~~~~gr~~ 1120 (2277)
||++|+..+..+.++||+|. ++ .||+.++++|+|+.-|||++. |
T Consensus 506 rqf~~~~~n~~V~~~~~nr~-------Nt------~De~l~~~~i~D~~lslV~~l--------------------~--- 549 (1427)
T KOG4522|consen 506 RQFVEEPQNSSVRVGQFNRK-------NT------ADELLSILFILDISLSLVSAL--------------------G--- 549 (1427)
T ss_pred HhhCcCccchhHHHHHhhcc-------cc------hhhhhHHHHHHHHHHHHHHHh--------------------c---
Confidence 99999999999999999993 22 799999999999999999986 3
Q ss_pred cccccccCCCccchhhHHHHHHHhhhhhHHHhcccchHHHHHHHHhhHHHHhcCCcccccchHHHHHHHHHHhCCchhHH
Q 000088 1121 LMLSRNAENHACGVGEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSGSAAYGYARYLLKKYGNMASVI 1200 (2277)
Q Consensus 1121 ~~~~~n~e~~~c~vgea~l~ssl~ryenil~a~dl~pe~ls~~~~r~~~~~~s~~r~~~s~~~~y~ry~lkky~~~~sv~ 1200 (2277)
||+|||.|.+|||.+. ||||+|||++.|++ ++++.|+|+|+ +| |.||.++
T Consensus 550 ----~n~e~n~cvi~~a~~~--l~rllniL~s~g~v--~~~~yi~rlaS--------sG-----ylr~~~~--------- 599 (1427)
T KOG4522|consen 550 ----RNVENNMCVIGEAILV--LRRLLNILLSAGLV--AMTAYINRLAS--------SG-----YLRYILK--------- 599 (1427)
T ss_pred ----cccccchhhHHHHHHH--HHHHHHHHHhcchH--hHHHHHHHHHh--------cc-----hhHHHhc---------
Confidence 7899999999999886 99999999999999 89999999665 22 9999998
Q ss_pred HHHhhhhhhhhhhhHhhhccCccccCCcCcCCCCcCCCCCCchhhhhhccCCcccccccchHHHHHHhHHHHHHhhhhhh
Q 000088 1201 EWEKNFKATCDKRLLSELESGRSLDGELGLPLGVPAGIEDPDDYLRQKISGGQLSRVGLSMRDVVHRHMEEAFHYFYDKE 1280 (2277)
Q Consensus 1201 ~wek~fk~t~d~rl~~el~~~rs~dg~~~~~~gv~ag~ed~d~~~rqki~~~r~srv~~~m~d~vqr~~~e~~~~~~~k~ 1280 (2277)
++|+.+..+.+++||+..|+..||+ |+.++|||.|.|++..- ++|+|||| ||+
T Consensus 600 ---N~~f~~~q~kil~~l~~lr~sq~~~--------~l~N~~~Y~~kk~~if~-----------~d~~Ve~~-eyl---- 652 (1427)
T KOG4522|consen 600 ---NNFFATSQKKILSELDHLRSSQGEY--------GLDNPDDYLRKKISIFG-----------LDRHVEEA-EYL---- 652 (1427)
T ss_pred ---cchhHHHHHHHHhcCcHhhhccccc--------ccCCHHHHHHHhhhccc-----------hhhhhhHH-HHH----
Confidence 8999999999999999999999999 67999999999998632 89999999 999
Q ss_pred hhhhccCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCChhhHhHhHHhhhccccchhhccccccCCCCCCCC
Q 000088 1281 RKLFAAGSPRNPAIDKSDDESQIAQQIIIGLMDCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNYQNY 1360 (2277)
Q Consensus 1281 ~~~~~~~~~k~~~~ek~~~~yq~a~~iv~gl~dcirq~gga~~~gd~slv~savsaiv~~~g~~~ak~~d~~~g~n~~~~ 1360 (2277)
++++++|+.|+..+||.+++||+|+|++.|+|+|+|| ||++||+||+..+|-.+|.+.||..|+.|+++
T Consensus 653 K~~i~t~~~~~~~~~k~~~s~~v~~~e~y~~~~cs~~-----------Lvs~a~T~i~k~~~~~~~~l~~Fh~~~~fqv~ 721 (1427)
T KOG4522|consen 653 KKLIGTGTMKASLAEKNDDSYQVAQQEVYGLMDCSRQ-----------LVSSAVTAIIKSVGLSVARLTDFHLGNIFQVH 721 (1427)
T ss_pred HHHhcccchhhhhhccCCchhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh
Confidence 4568999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHhhhhHHHHhhHHHhhcchhhhhhhhhhhhhhhhhhccccCCcccccccCCCCCCCCCCCCcchhhc
Q 000088 1361 ASTTGSLSFARRILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKAARSQFQSSPEAHDPNANMSNDIL 1440 (2277)
Q Consensus 1361 ~~~~~sl~~~r~il~~hi~~l~llkealger~srvfeiala~eas~~~~~~f~p~k~~r~qfq~spe~~d~~~~~~n~~~ 1440 (2277)
++.. |-|.+|.|||+| |||+ ++|+|| ++||||||||+ |+|.+.+|.|.|.+|| .|.+-|+.
T Consensus 722 ~~lv-sdn~~~~~l~~~--clC~--q~Lf~~--fI~~~~l~Tes-------f~~v~~~~gk~~~vpa-----~N~T~dmp 782 (1427)
T KOG4522|consen 722 PSLV-SDNIARYILRIH--CLCL--QALFER--FIFEIALATES-------FAPVKGSRGKHQLVPA-----NNSTIDMP 782 (1427)
T ss_pred hhhh-hhHHHHHHHHHH--HHHH--HHHHHH--HHHHHhhhhhh-------HHHHHhhhhhhhcccc-----ccccccCc
Confidence 9888 899999999988 9998 999999 89999999998 9999999999999995 34455554
Q ss_pred cCccccccccchhHHHHHHHHHHHHhhhchhhhhhhhhhheeccccceeeecccccCCCCCCcccccceeccCceEEEee
Q 000088 1441 NSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMVTVFRLKEGLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVH 1520 (2277)
Q Consensus 1441 ~~~~~~~~~~~~k~~aa~salvvgai~~gv~slermv~vlrlkegld~~~~~r~~~~~sng~~rs~~~~k~~~s~ev~vh 1520 (2277)
| . +...-|.+||+||+||||+ -|||+++|+.| ++|+|+.+|.++|+|.+++.|| .+|++|+- |+++|
T Consensus 783 ~-~-k~~l~~f~~It~~~s~l~i---~~~~V~y~d~~-l~~~K~~~Dfvefl~~~~~~sn-s~~avg~T------~~~~~ 849 (1427)
T KOG4522|consen 783 N-G-KMALSRFTKITAAVSALVI---THGVVTYEDIV-LLRLKDYLDFVEFLRRTKSSSN-SARAVGAT------EVYVH 849 (1427)
T ss_pred c-H-HHHHHhhHHHHHHhhhhee---ecceEEecHHH-HhhhhhhhhHHHHHHhhhcccc-cchhhhhh------HHHHH
Confidence 4 3 3444699999999999997 89999999999 9999999999999999999998 89999986 99999
Q ss_pred eehhhhcccccccccchhhhcCchhHHHHHhhhhcccccccCCchhHHHHHhhhhhhhcccc--chhhhhHHHHHHHHHH
Q 000088 1521 WFRLLVGNCRTVSDGLVVEFLGEPSIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFILNNS--LAVREDIHQMYQSLTM 1598 (2277)
Q Consensus 1521 wfr~l~gncrtv~~glv~~~lge~~i~alsr~qr~lpl~~vfppaysifa~v~wr~~~~~~~--~~~red~~qlyqsl~~ 1598 (2277)
|||++||||+++.+|+..++. +++|.+|||||||+.+||||||+|.||++||+|+.|.| -.+.||+|..||+.+|
T Consensus 850 vf~~~v~~~~h~se~~d~~~~---~~f~~~r~~~ml~i~~~fk~~~~~~~~fl~rk~~sn~n~~~~Vs~~~~~e~q~n~~ 926 (1427)
T KOG4522|consen 850 VFRLLVGNCKHVSEGLDLELV---SVFAISRMQRMLPIKLVFKPAYSIIAFFLWRKFVSNSNSNSSVSEDTHREYQSNTM 926 (1427)
T ss_pred HHHHHhcccccCCchhhhHHH---HHHHHHhhhhhhhHHhhhhHHHHHHHHHHccccccccchhhhhhhHhHHHHHhcch
Confidence 999999999999999999887 99999999999999999999999999999999998733 2459999999999999
Q ss_pred HHHHHHhcCCcccccccccccceeeeccCCChHHHHHHHhhcCcccccccccccchhhHHhHHHHhccCCCCCcccCCCc
Q 000088 1599 AINDAIRHLPFRDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPLRARLFLNAIIDCKMPSSLFKPEDF 1678 (2277)
Q Consensus 1599 ai~d~~~h~pfrdvc~r~~~~~y~l~~ad~~d~efa~~le~~~~d~~~k~~af~plrarlflna~idc~~p~~~~~~~~~ 1678 (2277)
|+.|+|||+|| .+|.+|.||+.++|.|| +|+.+|- |||+|||.+++||.
T Consensus 927 ~l~~vi~~Lp~---------------~ld~~d~~~g~~~e~H~----~ksI~~~--~ar~~l~~l~l~K~---------- 975 (1427)
T KOG4522|consen 927 ALHDVIKHLPF---------------VLDSTDAEFGSVFESHG----LKSIAFA--RARLFLNSLILCKV---------- 975 (1427)
T ss_pred HHHHHHHhccc---------------cccCCCccchhHHHhhc----hHHHHhH--HHHHHHhHHHHHHH----------
Confidence 99999999999 78999999999999999 8898888 99999999999997
Q ss_pred ccccCCccccccccchhhhHHHHHHHHHhhcCCccchhHHHHHHHhhchHHHHHHhhcccchHHHHHH-hcCCCcccccc
Q 000088 1679 NRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKFHWQWVELRLLLNEQALIDRLENHEMSLAEAIR-SLSPSPEKAAA 1757 (2277)
Q Consensus 1679 ~~~~~~~~~k~~~~~~~~kl~d~lv~~ld~lqpakfhwqwvelrlll~eqal~ek~~~~~~~l~~a~~-~~sp~~e~~~~ 1757 (2277)
..|..|.|... ||..|+.+++++++|+|||+ +++|||+|.|||++|+|.|.||++ +.+|. |+.+
T Consensus 976 --~~g~~c~~N~~-e~~~K~v~~~~sv~dcl~~s----------~~i~~q~l~~~lenh~mil~d~l~ysTCpt--k~d~ 1040 (1427)
T KOG4522|consen 976 --HEGVSCAKNRH-ENGTKLVDKLVSVLDCLQPS----------LLINEQALAEKLENHDMILTDALRYSTCPT--KPDA 1040 (1427)
T ss_pred --hcCchhhhhhH-HhHHHHHHHHhchhhhcchH----------HHhHHHHHHHHhhhccchhhhhHHhccCCC--cccc
Confidence 36778898833 99999999999999999999 899999999999999999999999 89988 8999
Q ss_pred chhchhhHHHHHHHhhcCCCCcchHHHHHHHhcchhhhhhHhhcceecccccccccchhhhHHHHhhhhccCcccccccc
Q 000088 1758 SENENNFIEIILTRLLVRPDAAPLFSELVHLFGRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKAQFW 1837 (2277)
Q Consensus 1758 se~e~~f~~iiltrll~rpdaa~l~se~vhl~g~~l~~s~~~~~kw~l~g~d~l~grk~~rq~l~~i~~~k~~~~k~q~~ 1837 (2277)
+|+|+||+ +|||++|||+||||.+|+|++|+. ||+ ||++||.|+|..++|||++|
T Consensus 1041 s~~e~~~~-------------~Pl~~tvvt~~d~s~dD~~~~~~~------Dvv--~k~V~~~l~n~~~~~g~~~~---- 1095 (1427)
T KOG4522|consen 1041 SENEKNFI-------------VPLFSTVVTLFDRSVDDSMLKQAE------DVV--RKTVRQKLINVGESKGLPTK---- 1095 (1427)
T ss_pred ccCccccC-------------CCchhhheeccCCccchhhhHhHH------HHH--HHHHHHHHHHhccccCccch----
Confidence 99999999 899999999999999999999998 998 99999999999999999999
Q ss_pred cccccC-CCCCCCcccc--cCcccccccccccccccccccccccCCCCCCCcccccccccccchhhHHHHHHhhcccccc
Q 000088 1838 KPWGWV-NSGFGPGLNR--GDKKKLEATSLEEGEVVEEGIDSKRHGKGSNPLFDAEGTSIGQQHVTERAFIELVLPCIDQ 1914 (2277)
Q Consensus 1838 kpwgw~-~~~~~~~~~~--~~k~k~e~~s~eegev~~~~~d~kr~~~~~~~~~~~~~~~~~~~~~te~a~~elvlpcid~ 1914 (2277)
|+|+ .+..||++.. +.|+||+.+++||||+.+|- .++|+.|......+.|.. ||||.+++||||||
T Consensus 1096 --~iwk~~~s~~p~~a~~~~k~~~F~i~ei~~~~dl~~~--------~f~q~ld~~s~~v~~qI~-e~~F~~~~l~~~~Q 1164 (1427)
T KOG4522|consen 1096 --WIWKNSSSSDPITANKAGKKRKFEITEIEEGEDLEEV--------LFPQVLDENSPSVGYQIT-ERAFVQLVLPCIDQ 1164 (1427)
T ss_pred --hheecccCCCchhhhhhhhhceEEEEEeccccchhHH--------hhhHHhhccChHHHhcCc-HHHHHHhcCCcccc
Confidence 9999 6777898765 88999999999999999773 799999999999998876 99999999999999
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHhhcCccc--ccccCCCCCcCCCCCCCccccccCCCCCCCCCCCCCCCCCCCHH
Q 000088 1915 SSDDSRNTFANDLIKQLNNIEQQISAVTRGANKL--TGSVPSGIEVPSNKGSNRKSIRGGSPGLARRLAATADPAPPSPA 1992 (2277)
Q Consensus 1915 ss~~~r~~fa~dlikq~~~i~~~i~~~~~~~~k~--~~~~~~g~e~~~nk~~~rk~~~ggsp~~~rr~~~~~~~~~ps~a 1992 (2277)
|+||+|.+|..++|.|+.++||+.+.++..-+-- .|++.+|.+-+++| ||+|+||..... |
T Consensus 1165 s~d~~~s~~vneiv~~~S~r~qrlTs~~~~it~~n~hg~~~~~~qls~l~----------s~sl~kr~~~n~-------a 1227 (1427)
T KOG4522|consen 1165 SSDESRSTFVNEIVRQFSNREQRLTSVTNRITTSNKHGTASSGSQLSSLK----------SPSLAKRSSANT-------A 1227 (1427)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHHhhcc----------CcchhhHHHhHH-------H
Confidence 9999999999999999999999999997655432 89999999999988 899999987665 9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCchhhHHHHHHHHHHHhccceeecccccCCCCCCCccchhhhcccccCCCCCcc
Q 000088 1993 ALRASMSLRLQFLLRLLPLIYTDGEPSGRNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQSKREVESLPEASSVPSA 2072 (2277)
Q Consensus 1993 alras~~lrlq~l~rllp~i~~d~~~~~r~mr~~las~i~~llg~rvv~eda~~~~~~~~~~~~~~e~~s~~e~~~~~~~ 2072 (2277)
|||++|.+|+||++|+|||||. +|+..+.+|.+|+.|.|+||+|||+||++++.+ -++-.|.||+++|| +
T Consensus 1228 ~L~~~~f~~~~~~~r~~~v~~~--kPs~~~~d~~c~~~~~~~~n~r~~l~~yev~ss----r~~~a~y~sTID~p----a 1297 (1427)
T KOG4522|consen 1228 ALRASMFLRLQFLLRLLPVICG--KPSFKNTDHACASTIVRLLNSRVVLEDYEVCSS----RSELAEYESTIDPP----A 1297 (1427)
T ss_pred HHHHHHHhHHHHHHhhhceeec--CCCCCchHHHHHHhHHhhccchhhhhHHhhhcc----chhhhhhhcccCCh----H
Confidence 9999999999999999998885 588999999999999999999999999997654 22337899999997 6
Q ss_pred cCCchhhHHH-HHHHHHHhhcCCCCCccccCCCCCCCCCCCCCCCcccHHHHHHhhcccccccCchhHHhHhhhcccccc
Q 000088 2073 DFSGESLFDR-LLLVLYGLLSSCQPSWLRPKPAFKSSNNTSKDSSGFDREIAESLQNDLDHMQLPDTVRWRIQAAIPILL 2151 (2277)
Q Consensus 2073 d~~~e~lfdr-ll~vlh~ll~~~~p~wlk~~~~sk~~~~~~r~~~~fd~e~~e~lq~~ld~mqlp~~ir~riqaamp~l~ 2151 (2277)
|.++|.+||+ -|+= |.-||||++||||||+||
T Consensus 1298 ~lss~~~~~pr~ll~-------------------------------------------L~~~q~~sfi~w~~qh~~---- 1330 (1427)
T KOG4522|consen 1298 DLSSEVLFDPRELLG-------------------------------------------LSTMQLPSFIRWRIQHAM---- 1330 (1427)
T ss_pred HhccccccChHHHhC-------------------------------------------CCcccchHHHHHHHHccc----
Confidence 8999999975 3322 234999999999999999
Q ss_pred CCCccccccCCCCcchhhhcccCcccccCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcccCccccccCCCC
Q 000088 2152 PSVRCSLTCQPPSVPVAALASLQPSISVSGASPGNLNLPQRNPVPLARSATNTGKSKPIPLQQDSDMEIDPWTLLEDGAG 2231 (2277)
Q Consensus 2152 ps~~~~~~cqpp~v~~~a~~~lq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~d~~~e~dpwtlledg~~ 2231 (2277)
..+|||.++|..||+..||...++.+ ..++|+.|+.....|..+-|.-...+.+..|-|--..+.
T Consensus 1331 -----dy~~qe~s~~~~~ltl~~~igit~~a------~~neq~~~~I~d~~~~~~~~~fs~~P~q~~~~~nt~~~d---- 1395 (1427)
T KOG4522|consen 1331 -----DYSCQEHSVPPTALTLVQPIGITAAA------GTNEQNSPAISDSGTAAKLKPFSLAPHQQQEADNTDVVD---- 1395 (1427)
T ss_pred -----ccccCcCCCCccchhhhccchhhhhh------hhccccceeeeeccchhhhccccCCchhhhhhccceeec----
Confidence 78999999999999999998887764 255777888888877776666655555555543322322
Q ss_pred CCCCCCCCcccCCCccchhhhhhccccceeeeecccccc
Q 000088 2232 SGPSSSNTAAIGSGDQANLQAASWLKGAIRVRRTDLTYI 2270 (2277)
Q Consensus 2232 ~~~~~s~~~~~~~gd~~nl~a~swlkgavrvrrtdltyi 2270 (2277)
.+.+++.|.+|++|++||||+||||||||||+
T Consensus 1396 -------~~as~s~d~~~f~~Sc~l~~~v~vr~~dl~~~ 1427 (1427)
T KOG4522|consen 1396 -------SNASNSSDMANFRASCWLKGAVRVRRTDLTYV 1427 (1427)
T ss_pred -------ccccccHHHHHhhHhHHHhhhhheeeeccccC
Confidence 44556689999999999999999999999995
|
|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
| >PF12145 Med12-LCEWAV: Eukaryotic Mediator 12 subunit domain; InterPro: IPR021990 This domain is found in eukaryotes, and is typically between 325 and 354 amino acids in length | Back alignment and domain information |
|---|
| >KOG4522 consensus RNA polymerase II transcription mediator [Transcription] | Back alignment and domain information |
|---|
| >PF09497 Med12: Transcription mediator complex subunit Med12; InterPro: IPR019035 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | Back alignment and domain information |
|---|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 8e-13
Identities = 90/620 (14%), Positives = 174/620 (28%), Gaps = 173/620 (27%)
Query: 1372 RILRIYITCLCLLKEALGERQSRVF-EIALATEASCALARVFTPGKAARSQFQSSPEAHD 1430
+ LL + E + F E L ++ + T + + E D
Sbjct: 60 AVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 1431 PNANMSNDILNSSSKVASGRTSKVTAAISAL-----VVGAVLHGV-----TSLERMVTVF 1480
N N + +K R AL ++ GV T +
Sbjct: 118 RLYN-DNQVF---AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV------- 166
Query: 1481 RLKEGLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGLVVEF 1540
+ S +K+ ++ + W L + NC S V+E
Sbjct: 167 -------ALDVCLS--------------YKVQCKMDFKIFW--LNLKNCN--SPETVLEM 201
Query: 1541 LG------EPSIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFILNNSLAVREDIHQMYQ 1594
L +P+ + S + L + A L + +P+ N L V ++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPY--ENCLLVLLNV----- 253
Query: 1595 SLTMAINDAIRHL-PFRDVCLRDCQGFYNLV-TADSTDAEFAAMLELNGLDLQLKSMAFV 1652
+A + F ++ C+ L+ T +F + + L SM
Sbjct: 254 ------QNA-KAWNAF-NL---SCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 1653 PLRAR-LFLNAIIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVL--DSL 1709
P + L L +DC+ P L P E + + +S+
Sbjct: 300 PDEVKSLLLK-YLDCR-PQDL--PR------------------EVLTTNPRRLSIIAESI 337
Query: 1710 QPAKFHWQ-WVELRLLLNEQALIDRLENH-EMSLAEAIRSLSPSPEKAAASE----NENN 1763
+ W W + D+L E SL L P+ + +
Sbjct: 338 RDGLATWDNW--------KHVNCDKLTTIIESSLN----VLEPAEYRKMFDRLSVFPPSA 385
Query: 1764 FI-EIILTRLLVRPDAAPLFSELVHLFGRSLEDSMLLQAKWFLGGHDVLF-------GRK 1815
I I+L+ + + + + L SL + ++ + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEY 443
Query: 1816 TIRQRLVNIAESKGLSTKAQFWKPWGWVNSGFGPGLNRGDK----------KKLEATSLE 1865
+ + +V+ + P + + P D+ K +E E
Sbjct: 444 ALHRSIVD-----------HYNIPKTFDSDDLIP--PYLDQYFYSHIGHHLKNIEHP--E 488
Query: 1866 EGEVVEEG------IDSK-RHGKGSNPLFDAEGTSIGQQHVTERAFIELVLPCIDQSSDD 1918
+ ++ K RH + + QQ + +I D
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQLKFYKPYI------CDNDPKY 541
Query: 1919 SRNTFANDLIKQLNNIEQQI 1938
R N ++ L IE+ +
Sbjct: 542 ER--LVNAILDFLPKIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00