Query 000089
Match_columns 2277
No_of_seqs 153 out of 186
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 14:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nn6g3 d.51.1.1 (G:195-274) R 33.0 4.6 0.00033 37.5 0.2 32 1364-1401 6-37 (80)
2 d1nm3a1 c.47.1.1 (A:166-239) C 27.5 4.8 0.00035 35.2 -0.7 29 884-914 8-36 (74)
3 d1egoa_ c.47.1.1 (A:) Glutared 26.6 7.9 0.00058 34.6 0.6 21 885-907 5-25 (85)
4 d1fova_ c.47.1.1 (A:) Glutared 21.9 8.2 0.0006 34.2 -0.3 27 885-913 5-31 (82)
5 d1h75a_ c.47.1.1 (A:) Glutared 19.7 12 0.00084 32.9 0.2 27 885-913 5-31 (76)
6 d1r7ha_ c.47.1.1 (A:) Glutared 16.4 15 0.0011 31.7 0.2 40 885-927 5-44 (74)
7 d1ktea_ c.47.1.1 (A:) Glutared 12.1 23 0.0017 32.9 0.1 17 885-902 16-32 (105)
8 d1rxwa1 a.60.7.1 (A:220-324) F 11.0 80 0.0058 29.4 3.6 31 1176-1207 20-50 (105)
9 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 10.0 2.3E+02 0.017 25.1 6.3 71 1245-1325 13-84 (84)
10 d1fwoa_ g.3.16.1 (A:) Oryzain 9.2 54 0.004 26.4 1.3 15 980-994 2-16 (35)
No 1
>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.99 E-value=4.6 Score=37.50 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=25.9
Q ss_pred cCchhHHHHHHhhhhHHHHhhHHHhhcchhhhhhhhhh
Q 000089 1364 TGSLSFARRILRIYITCLCLLKEALGERQSRVFEIALA 1401 (2277)
Q Consensus 1364 ~~sl~~~r~il~~hi~~l~llkealger~srvfeiala 1401 (2277)
.-||||||++|.=+ |-+-++||.+.+ ||||+-
T Consensus 6 ~vsl~laR~Ll~~~----~~vL~~Lgk~~~--FEIavG 37 (80)
T d2nn6g3 6 KVTLGLIRKLLAPD----CEIIQEVGKLYP--LEIVFG 37 (80)
T ss_dssp CCCHHHHHHHHCTT----CSHHHHTTCSSS--CCCEEE
T ss_pred EecHHHHHHHhcCC----CHHHHHHhhhCC--eEEEEe
Confidence 46899999999643 457789999986 999974
No 2
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=27.47 E-value=4.8 Score=35.18 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=21.9
Q ss_pred cCCCCCCchhhhhhhhhcccccCCCceeccC
Q 000089 884 LSEGTPGCEDCKRVKRQKLCEDRSSVLQISS 914 (2277)
Q Consensus 884 ~~~~~~gce~c~r~krqkl~~~~~~~~q~~~ 914 (2277)
++..+++|..|.|||+- | +++.-.|.-.-
T Consensus 8 ~iYs~~~C~~C~~ak~l-L-~~~~i~~~~~~ 36 (74)
T d1nm3a1 8 SIFTKPGCPFCAKAKQL-L-HDKGLSFEEII 36 (74)
T ss_dssp EEEECSSCHHHHHHHHH-H-HHHTCCCEEEE
T ss_pred EEEECCCCHHHHHHHHH-H-HHcCCCeEEEE
Confidence 35678999999999987 7 66666665543
No 3
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=26.55 E-value=7.9 Score=34.64 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=16.6
Q ss_pred CCCCCCchhhhhhhhhcccccCC
Q 000089 885 SEGTPGCEDCKRVKRQKLCEDRS 907 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl~~~~~ 907 (2277)
+..++||..|.+||+- | ++.+
T Consensus 5 iysk~~Cp~C~~aK~l-l-~~~~ 25 (85)
T d1egoa_ 5 IFGRSGCPYCVRAKDL-A-EKLS 25 (85)
T ss_dssp EECCTTSTHHHHHHHH-H-HHHH
T ss_pred EEeCCCCHhHHHHHHH-H-HHcC
Confidence 5678999999999997 5 4433
No 4
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=21.90 E-value=8.2 Score=34.19 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceecc
Q 000089 885 SEGTPGCEDCKRVKRQKLCEDRSSVLQIS 913 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl~~~~~~~~q~~ 913 (2277)
+..+++|..|.+||.. | +++.-.|+-.
T Consensus 5 iys~~~Cp~C~~ak~~-L-~~~~i~y~~~ 31 (82)
T d1fova_ 5 IYTKETCPYCHRAKAL-L-SSKGVSFQEL 31 (82)
T ss_dssp EEECSSCHHHHHHHHH-H-HHHTCCCEEE
T ss_pred EEeCCCCHhHHHHHHH-H-HHcCCCeEEE
Confidence 5668999999999987 7 5555556553
No 5
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=19.68 E-value=12 Score=32.87 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceecc
Q 000089 885 SEGTPGCEDCKRVKRQKLCEDRSSVLQIS 913 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl~~~~~~~~q~~ 913 (2277)
++.+++|..|.++|+- | ++++-.|.-.
T Consensus 5 iYs~~~C~~C~~ak~~-L-~~~~i~y~~~ 31 (76)
T d1h75a_ 5 IYTRNDCVQCHATKRA-M-ENRGFDFEMI 31 (76)
T ss_dssp EEECTTCHHHHHHHHH-H-HHTTCCCEEE
T ss_pred EEeCCCCccHHHHHHH-H-HhcCceeEEE
Confidence 5678999999999997 7 6666666554
No 6
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=16.36 E-value=15 Score=31.65 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=26.2
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceeccCCCCCCCcccceee
Q 000089 885 SEGTPGCEDCKRVKRQKLCEDRSSVLQISSPIHSDDEDLWWVR 927 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl~~~~~~~~q~~~~~~sd~ed~wwv~ 927 (2277)
+..+|+|..|.++|+- | +++.-.|.-.-. ..|+|-.++++
T Consensus 5 iYt~~~C~~C~~ak~~-L-~~~~i~~~~~~i-~~~~~~~~~~~ 44 (74)
T d1r7ha_ 5 LYTKPACVQCTATKKA-L-DRAGLAYNTVDI-SLDDEARDYVM 44 (74)
T ss_dssp EEECTTCHHHHHHHHH-H-HHTTCCCEEEET-TTCHHHHHHHH
T ss_pred EEeCCCChhHHHHHHH-H-HHcCCceEEEEc-cCCHHHHHHHH
Confidence 5678999999999987 7 666666665433 23334344443
No 7
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=12.12 E-value=23 Score=32.88 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.7
Q ss_pred CCCCCCchhhhhhhhhcc
Q 000089 885 SEGTPGCEDCKRVKRQKL 902 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl 902 (2277)
+..+++|..|.+||+- |
T Consensus 16 iysk~~Cp~C~~ak~l-l 32 (105)
T d1ktea_ 16 VFIKPTCPFCRKTQEL-L 32 (105)
T ss_dssp EEECSSCHHHHHHHHH-H
T ss_pred EEECCCCchHHHHHHH-H
Confidence 5678999999999986 5
No 8
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.99 E-value=80 Score=29.38 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=23.0
Q ss_pred cccccchHHHHHHHHHHhCCchhHHHHHhhhh
Q 000089 1176 RVSGSAAYGYARYLLKKYGNMASVIEWEKNFK 1207 (2277)
Q Consensus 1176 r~~~s~~~~y~ry~lkky~~~~sv~~wek~fk 1207 (2277)
.|+|=|- .-|-.|++|||++-.+.++.+..+
T Consensus 20 GV~GIG~-ktA~kli~~~gsle~i~~~~~~~~ 50 (105)
T d1rxwa1 20 GVKGVGV-KKALNYIKTYGDIFRALKALKVNI 50 (105)
T ss_dssp CCTTCCH-HHHHHHHHHHSSHHHHHHHHTC--
T ss_pred CCCCcCH-HHHHHHHHHhCCHHHHHHHHHhhH
Confidence 3566665 556678999999999999987543
No 9
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.02 E-value=2.3e+02 Score=25.09 Aligned_cols=71 Identities=7% Similarity=0.235 Sum_probs=44.4
Q ss_pred hhhhccCCcc-cccccchHHHHHHhHHHHHHhhhhhhhhhhccCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCCCC
Q 000089 1245 LRQKISGGQL-SRVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKSDDESQIAQQIIIGLMDCFRQTGGAAQ 1323 (2277)
Q Consensus 1245 ~rqki~~~r~-srv~~~m~d~vqr~~~e~~~~~~~k~~~~~~~~~~k~~~~ek~~~~yq~a~~iv~gl~dcirq~gga~~ 1323 (2277)
+|.+|+...+ .-+...=|+.|...++|+..+|...+. . .+ .-+ ++-+.--++++.-+|--+-|.+|++|
T Consensus 13 ~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~--a----~~-ee~---~~k~~eLe~~~~PI~~k~y~~~g~~P 82 (84)
T d1ud0a_ 13 MKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQT--A----EK-EEF---EHQQKELEKVCNPIITKLYQSAGGMP 82 (84)
T ss_dssp HHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHH--H----HH-HHH---HHHTHHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCC--C----CH-HHH---HHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 4555554333 334566778899999999999964320 0 00 001 23344456777777878888888888
Q ss_pred CC
Q 000089 1324 EG 1325 (2277)
Q Consensus 1324 ~g 1325 (2277)
.|
T Consensus 83 ~g 84 (84)
T d1ud0a_ 83 GG 84 (84)
T ss_dssp CC
T ss_pred CC
Confidence 77
No 10
>d1fwoa_ g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=9.21 E-value=54 Score=26.38 Aligned_cols=15 Identities=53% Similarity=0.957 Sum_probs=13.0
Q ss_pred cccCCCCCCCCCCCC
Q 000089 980 HVCDNKGSCPHHKTG 994 (2277)
Q Consensus 980 h~c~~k~scphh~~~ 994 (2277)
||||+.-+||-..|.
T Consensus 2 ~vCD~~~sCp~~~TC 16 (35)
T d1fwoa_ 2 HVCDDNFSCPAGSTC 16 (35)
T ss_dssp CCSSSSCCCCSSSEE
T ss_pred ccccCcccCCCCCcE
Confidence 899999999987653
Done!