BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000090
(2277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|H3K2Y6|MED12_ARATH Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis
thaliana GN=MED12 PE=1 SV=1
Length = 2235
Score = 2638 bits (6838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1395/2308 (60%), Positives = 1718/2308 (74%), Gaps = 104/2308 (4%)
Query: 1 MQRYHPTSCTSAVNNSAISGTSARDATRADSSSLPANFSINSRRSTQLTPYKLKCDKESL 60
MQRYH +CTSAVNNSAI G SARD+ RADSSS+ N+S+NSRR LTPYKLKC+K+ L
Sbjct: 1 MQRYHAANCTSAVNNSAIGGASARDSGRADSSSI-GNYSLNSRRPPPLTPYKLKCEKDGL 59
Query: 61 NSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCR 120
NSRLGPPDFHP T N PEE LT+EYVQ GYKETV+GL+E EI L+Q TF+KPVV KC+
Sbjct: 60 NSRLGPPDFHPPTSNSPEENLTKEYVQFGYKETVDGLKESEEIILSQVHTFSKPVVHKCK 119
Query: 121 EAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIEGLSQQ 180
EA+RKCLRAINESRA KRKAGQVYGVPLS SLL KPG FPEQR CGEE +K+WIE LSQQ
Sbjct: 120 EAVRKCLRAINESRALKRKAGQVYGVPLSGSLLCKPG-FPEQRSCGEETKKRWIESLSQQ 178
Query: 181 HKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDK 240
HKRLRSLAD++P GYR+++LFEVLIRNNVPLLRATWFIKVTYLNQVR A SG DK
Sbjct: 179 HKRLRSLADNIP-GYRRKTLFEVLIRNNVPLLRATWFIKVTYLNQVRPSPAAISSGTPDK 237
Query: 241 IQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDPAAVIN 300
Q SR E WTKDVI+YLQ+LLDE SRN+S Q +RDRSPQ LYTGS Q+ S + +
Sbjct: 238 TQASRCEQWTKDVIEYLQYLLDELLSRNSSFPAQQTRDRSPQMLYTGSMQKNSPASTSLY 297
Query: 301 SEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDKELLEILQLVLPIIYGVLE 360
EE SLHFKWWYMVRL+QWH AEGLL P+ I++WVL L++KE+ EILQL+LPI+YGVLE
Sbjct: 298 GEETSLHFKWWYMVRLLQWHHAEGLLFPNLIVDWVLKLLQEKEIFEILQLLLPIVYGVLE 357
Query: 361 TVVSSQTYVRSLVGIATHFIREPSPGGSDLVDNSRRAYTISALAEMLRYLILAVPDTFVA 420
++V SQTYV+SLV IA FI+EP+PGGSDLVDNSRRAYT+SAL EM+RYL+LA PDTFVA
Sbjct: 358 SIVLSQTYVQSLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSALIEMVRYLVLAAPDTFVA 417
Query: 421 LDCFPLPSCVVSYAANDGNFVSKASEDVGKMKNYSTDAICVFRGKAVDAQYQSLSFDNVI 480
D FPLP V + ND ++ SKA E++ K+++ S + F+G+ V ++++ LSFD I
Sbjct: 418 SDFFPLPPSVAACGPNDVSYTSKAYENLEKLRSNSAEISAQFQGRGVLSRFEFLSFDYTI 477
Query: 481 SAIQRRADNLAKDASPGYPGHSVAKAVQALDKALLQGDIREAYKHLFEDLCDAALDESWI 540
S IQR AD+LAK AS GYP H+VAKAVQALDKAL GDIR AY +LFEDLC+ A+DE+WI
Sbjct: 478 STIQRSADDLAKIASAGYPQHNVAKAVQALDKALSDGDIRAAYSYLFEDLCNGAVDEAWI 537
Query: 541 AEVSPCLRSSLKWIGTVSLSSVCSVFFICEWATCDFRDFRTVPPHGMKFTGRKDFSQIYV 600
+VSPCLRSSL+WIG +S S VCSVFF+ EWATCDFRDFR P +KF+GRKD SQ+Y+
Sbjct: 538 TDVSPCLRSSLRWIGAISTSFVCSVFFLIEWATCDFRDFRAGVPKDIKFSGRKDCSQVYL 597
Query: 601 AIRLLKQKIRDLHTPPRRKSESTLGIIDNLAKGSRQRNNYANRNFQGNGYEIKNNANRLD 660
I+LLKQKI LG KG RNN+ ++
Sbjct: 598 VIQLLKQKI--------------LGGEFTARKGKNCRNNFL-------------GVSKPS 630
Query: 661 GLRINSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFIMELVRAGIFYPQAYVRQL 720
G S D FE+PGPLHDIIVCWIDQHE+HK G KR+Q + EL+R+GIF P AYVRQL
Sbjct: 631 G----SMDAFESPGPLHDIIVCWIDQHEVHK-GGAKRLQLLVFELIRSGIFNPIAYVRQL 685
Query: 721 MVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEARIAEGSQLSEAIHVYSNERR 778
+VSG++D+ +D RR RHHRILK LPG F+ LEEA++ G +LSEA+ YSNERR
Sbjct: 686 IVSGMIDVIQPAVDPERRMRHHRILKQLPGCFVHETLEEAQLFGGDKLSEAVRTYSNERR 745
Query: 779 LVLHELLFDQSIYVN---VAAQNQKRHMAGGRDGASPSLADQWKTIQPTTGISSGRSGKS 835
L+L ELL ++ Y N ++ Q K+ P + + + KS
Sbjct: 746 LLLRELLVEKGKYWNNLVLSDQKSKKISTSLSSVIFPRACN-----AKSNSKGPRKHTKS 800
Query: 836 DADIEELKASIAVILQLPSSSATSADSGLDESQGSVKRSLGAVSSKMDLSEGTPGCEDCK 895
DI ELK I+ +LQ P S DE Q SVKRS G+V SKMD E TPGCEDC+
Sbjct: 801 SVDIRELKERISALLQFPGMSCGVETPVRDEFQNSVKRSSGSVYSKMDQPEATPGCEDCR 860
Query: 896 RVKRQKLCEDRSSVLQISSPIHSDDEDLWWVRKGPKPLE-SYKADPPLKSTKQVSRGRQK 954
R KR K+ +++SS Q +SPI SD+ED WW++KG K +E S K DP ++ TKQV RGRQK
Sbjct: 861 RAKRPKMNDEKSSCYQGNSPIASDEEDNWWIKKGSKTVESSLKVDPQIEITKQVPRGRQK 920
Query: 955 TVRRTQSLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGETLKSMDGVRTACYGDI 1014
R+TQSLAQL AARIEGSQGASTSHVCDNK SCPHH GVEGE K +D RT+ D+
Sbjct: 921 MARKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGENQKVVDVFRTSTPVDM 980
Query: 1015 VSIGKALKKLRYVEKRTVTVWLISIARQHIEEAEKTAAKVGQFNRSFVPVDGRISGRWRL 1074
VS+G +LK+L++V+KR++ VWL + RQ +EE +K++ +VGQFNR PV+ + + RW+L
Sbjct: 981 VSVGNSLKQLQFVDKRSIAVWLTTAVRQLVEEPQKSSVRVGQFNRG-APVEEKNTIRWKL 1039
Query: 1075 SEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRNILMLSRNAENHACGV 1134
DEL +IL+ +D+ DLVSA KFLLWLLPK ++PS + GRN++ + RN EN+ C +
Sbjct: 1040 GADELYSILFLLDISLDLVSAVKFLLWLLPKANSTPSFAVQGGRNLVTVPRNVENNMCEI 1099
Query: 1135 GEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSGSAAYGYARYLLKKYG 1194
GEA L+SSLRRYENI+++ DL+PEA++A M+RAA +M+SNG++SGSAA Y RY+LK+YG
Sbjct: 1100 GEAILVSSLRRYENILLSADLVPEAMTALMNRAASLMSSNGKISGSAALVYTRYILKRYG 1159
Query: 1195 NMASVIEWEKNFKATCDKRLLSELESGRSLDGELGLPLGVPAGIEDPDDYLRQKIS--GG 1252
++ SV+EW NFKAT +K+LLSEL+ RS +GE G PLGVPAG+++PDDYLR+KIS G
Sbjct: 1160 SLPSVVEWHNNFKATSEKKLLSELDHTRSGNGEYGNPLGVPAGVDNPDDYLRKKISIGGA 1219
Query: 1253 QLSRVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKSDDESQIAQQIIIGLM 1312
+ SRVGLSMRDV+ RH+EEA HY +KL G+ + +K+DD Q+AQQI++GLM
Sbjct: 1220 RPSRVGLSMRDVLQRHVEEATHYL----KKLIGTGTMKASLAEKNDDGYQVAQQIVVGLM 1275
Query: 1313 DCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNYQNYASTTGSLSFARR 1372
DC RQTGGAAQEGDPSL+SSAVSAI+ +V ++ +I DF+ G+ YQN+ S S + AR
Sbjct: 1276 DCIRQTGGAAQEGDPSLVSSAVSAIINSVGLSVARITDFSLGNIYQNHPSGVDSSNIARY 1335
Query: 1373 ILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKAARSQFQSSPEAHDPN 1432
ILRI+ITCLCLLKEALGERQSRVFEIALATE+S AL VF P K +R Q Q SPE++D N
Sbjct: 1336 ILRIHITCLCLLKEALGERQSRVFEIALATESSTALTGVFAPVKGSRGQHQLSPESYDSN 1395
Query: 1433 ANMSN-DILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMVTVFRLKEGLDVIQF 1491
AN S D+ N + K+A R +K+TAA+SALV+G++ HGV +LER+V + RLK+ LD +QF
Sbjct: 1396 ANNSTIDMSNGTGKMALSRATKITAAVSALVIGSITHGVITLERIVGLLRLKDYLDFVQF 1455
Query: 1492 VRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGLVVEFLGEPSIVALSR 1551
VR TKS+SNGSARS+G K+++ IEV+VHWFRLLVGNC+TVS+GLV+E +GE S+VA+SR
Sbjct: 1456 VRRTKSSSNGSARSMGASKVESPIEVYVHWFRLLVGNCKTVSEGLVLELVGESSVVAISR 1515
Query: 1552 MQRMLPLSLVFPPAYLIFAFVLWRPFI--LNNSLAVREDIHQMYQSLTMAINDAIRHLPF 1609
MQRMLPL LVFPPAY I AFVLWRPF+ N++ +V ED H++YQSLTMA +D I+HLPF
Sbjct: 1516 MQRMLPLKLVFPPAYSIIAFVLWRPFVSNSNSNSSVHEDTHRLYQSLTMAFHDVIKHLPF 1575
Query: 1610 RDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPLRARLFLNAIIDCKMP 1669
RDVC RD QG Y L+ ADSTDAEFA++ E +GLD+ LKS+AF PLRARLFLN++IDCK+P
Sbjct: 1576 RDVCFRDTQGLYELIVADSTDAEFASVFESHGLDMHLKSVAFAPLRARLFLNSLIDCKVP 1635
Query: 1670 SSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKFHWQWVELRLLLNEQA 1729
SS + E G +E+K+ N KL+DKLV VLD LQPAKFHWQWVELRLLLNEQA
Sbjct: 1636 SSGYSHE------GVSEAKNRHQGNGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQA 1689
Query: 1730 LIDRLENHEMSLAEAIRSLSPSPEKAAASENENNFIEIILTRLLVRPDAAPLFSELVHLF 1789
L ++LENH+M L +AIRS P+ EK ASENE NFI+I+LTRLLVRPDA PLFSE+VHLF
Sbjct: 1690 LAEKLENHDMPLTDAIRSSCPTSEKPDASENEKNFIQILLTRLLVRPDAVPLFSEVVHLF 1749
Query: 1790 GRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKAQFWKPWGWVNSGFGP 1849
GRS+EDSML QA+WFL G DVLFGRKTIRQ+L+ + ESKGL TK QFWKPWGW NS
Sbjct: 1750 GRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCNSSSSD 1809
Query: 1850 GLN---RGDKKKLEATSLEEGEVVEEGIDSKRHGKGSNP-LFDAEGTSIGQQHVTERAFI 1905
+ G K+K E TS+EEGEV+EEG S+ K P + D S+G TERAF+
Sbjct: 1810 HITANKAGKKRKFEITSIEEGEVIEEGSGSR---KVLLPRVLDENSPSVGYGITTERAFV 1866
Query: 1906 ELVLPCIDQSSDDSRNTFANDLIKQLNNIEQQISAVTR---GANKLTGSVPSGIEVPSNK 1962
+LVLPCIDQSSD+SR+TF N+L++Q +NIEQQ+S+VT +NK G+ SG E+ SNK
Sbjct: 1867 QLVLPCIDQSSDESRSTFVNELVRQFSNIEQQLSSVTNRSTTSNKQMGTASSGSEISSNK 1926
Query: 1963 GSNRKSIRGGSPGLARRLAA-TADPA-PPSPAALRASMSLRLQFLLRLLPLIYTDGEPSG 2020
GS RK +RGGSP LARR +A T D + PPSPAALRASMSLRLQFLLRLLP+I GEPS
Sbjct: 1927 GSTRKGLRGGSPSLARRSSANTTDTSPPPSPAALRASMSLRLQFLLRLLPVIC--GEPSF 1984
Query: 2021 RNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQ---SKREVESLPEASSVPSADFSGE 2077
+N R+ LAS I+RLLGSRVV+ED Y + SP+ SK E ES + SS+ AD S E
Sbjct: 1985 KNTRHALASTIVRLLGSRVVYED-----YAVCSPRSELSKAETESTIDPSSM--ADLSSE 2037
Query: 2078 SLFDRLLLVLYGLLSSCQPSWLRPKPAFKSSNNTSKDSSGFDREIAESLQNDLDHMQLPD 2137
LFDRLL VL+GLLS+ QP WL+P+P SSN +SKD + FDR+ AESLQN+L MQLPD
Sbjct: 2038 VLFDRLLFVLHGLLSNHQPKWLKPRP---SSNESSKDFTLFDRDAAESLQNELSRMQLPD 2094
Query: 2138 TVRWRIQAAIPILLPSVRCSLTCQPPSVPVAALASLQPSISVSGASPGNLNLPQRNPVPL 2197
T+RWRIQAA+PILLPS+RCSL+CQP SVP AL +QPS S + A QRN +
Sbjct: 2095 TIRWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPSGSTAAAGTN-----QRNSPAI 2149
Query: 2198 ARSATNT--GKSKPIPL----QQDSDME--IDPWTLLEDGAGSGPSSSNTAAIGSGDQAN 2249
++S T GK KP L QQ++D +DPWTLLED G+ S++ A S D AN
Sbjct: 2150 SKSGTAAAQGKLKPTMLAPHQQQEADNTDVVDPWTLLED--GTSSGLSSSNASNSSDMAN 2207
Query: 2250 LQAASWLKGAIRVRRTDLTYIGAVDDDS 2277
L+A WLKGA+RVRRTDLTY+G+VDDDS
Sbjct: 2208 LRATCWLKGAVRVRRTDLTYVGSVDDDS 2235
>sp|Q54U49|MED12_DICDI Putative mediator of RNA polymerase II transcription subunit 12
OS=Dictyostelium discoideum GN=med12 PE=3 SV=2
Length = 2731
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 139/288 (48%), Gaps = 33/288 (11%)
Query: 56 DKESLNSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPV 115
DK+ L LG PDF+P E+TL +E++ G+ E + +E + S + + F+ P
Sbjct: 356 DKKELGPDLGVPDFYPLDDKSKEDTLPQEFILGGFCERYQH-DECKSSS-SIFKNFDFP- 412
Query: 116 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 175
K +E + + + + ++ +K+GQ P+ + K V PEQ+ R+ W+
Sbjct: 413 --KVKEQLLQSIYQVEWKKSSTQKSGQP---PVMNKSGNKRPV-PEQKAWSANHRESWVL 466
Query: 176 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLS 235
L+ ++ L+ LA VPHGY+ +L ++ + N VPL+RATW+ K+ Y N +H +
Sbjct: 467 KLAG-NEPLQKLASSVPHGYKGETLLKMFLDNQVPLIRATWYTKIVYGNMPKHKTV---E 522
Query: 236 GAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDP 295
+ D WTK ++ L L+ RN + S S + G +
Sbjct: 523 PSND---------WTKTIVQSLFALI-----RNTTGENNSSGSSSSNNVLGG------NS 562
Query: 296 AAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDKE 343
+ + + S + Y+ RL++W+ +EGLL ++ +++ L + +
Sbjct: 563 GSGVVKKATSSYTGILYIERLIKWNFSEGLLNKDILLSMLIDHLNETD 610
>sp|A1CJ92|SRB8_ASPCL Mediator of RNA polymerase II transcription subunit 12
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=srb8 PE=3 SV=1
Length = 1591
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 68 DFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRK 125
DF P T N PE+ L + + GY + + +S ++ T + LK R + +
Sbjct: 208 DFLPWTGNHPEDVLNEQTAKQGYYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-Q 259
Query: 126 CLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKR 183
L ++ + +KR+ S++T P F P + + R+ W+ L+
Sbjct: 260 MLSSVFAAALEKRQG---------HSMVTAPSTFKPPPRVTLTDNKREAWLRDLANPTVP 310
Query: 184 LRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQL 243
LR L+ +PHG R R L + + VP+ RA W K N++R SGA + +
Sbjct: 311 LRRLSRTIPHGIRGRVLLDQCLTKWVPVGRAVWLAKCVGANEIRAFKRKGTSGA---LAI 367
Query: 244 SRTEIWTKDVIDYLQHLLD 262
W +D +Q LD
Sbjct: 368 GLEAKWVRDWTTNVQQFLD 386
>sp|Q0CBX9|SRB8_ASPTN Mediator of RNA polymerase II transcription subunit 12
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=srb8 PE=3 SV=2
Length = 1583
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 30/237 (12%)
Query: 36 ANFSINSRRST-----QLTPYKLKCDKES-LNSRLGPPDFHPQTPNCPEETLTREYVQNG 89
N S+ SR S+ Q TPY ++C + + DF P T N PE+ L + + G
Sbjct: 172 GNKSVKSRDSSPAKKVQTTPYHIECPSVAPVLKGQKVADFSPWTGNHPEDVLNEQTAKQG 231
Query: 90 YKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRKCLRAINESRAQKRKAGQVYGVP 147
+ + + +S ++ T + LK R + + L ++ + +KR+
Sbjct: 232 HYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-QMLSSVFAAALEKRQ-------- 275
Query: 148 LSDSLLTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLI 205
S +L+ P F P + + R+ W+ L+ LR L+ +PHG R ++L + +
Sbjct: 276 -SHNLVNAPSTFKPPPRVTLTDNKREAWLRDLANPSVPLRRLSRTIPHGIRGKALLDQCL 334
Query: 206 RNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLD 262
+P+ RA W K N++R SGA + + W ++ ++Q L+
Sbjct: 335 SKWIPVNRAVWLAKCVGANEIRAFKRKGTSGA---VVIGLEAKWVREWTAHVQQFLE 388
>sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription subunit 12
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=srb8 PE=3 SV=2
Length = 1617
Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 42 SRRSTQLTPYKLKCDKESLNSR-LGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEV 100
S + Q TPY ++ + R DF P N PE+ L + + GY + +
Sbjct: 181 SAKEVQTTPYHIETPSVAPVIRGEKVADFSPWMGNHPEDVLNEQTAKQGYYDRTQ----- 235
Query: 101 REISLTQAQTFNKPVV--LKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGV 158
+S ++ T + LK R + + L ++ + +KR+ +++T P
Sbjct: 236 --VSQNESNTARPSLYAQLKHRSGL-QILSSVFAAALEKRQG---------HNMVTAPST 283
Query: 159 F--PEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATW 216
F P + + R+ W+ L+ + LR L+ +PHG R R L + + VP+ RA W
Sbjct: 284 FKPPPRVTLTDNKREAWLRDLANPNVPLRKLSRTIPHGIRGRVLLDQCLTKWVPVGRAVW 343
Query: 217 FIKVTYLNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLD 262
K N++R SGA + + W +D +Q L+
Sbjct: 344 LAKCVGANEIRAFKRKGTSGA---LTIGLEAKWVRDWTANVQQFLE 386
>sp|A1D887|SRB8_NEOFI Mediator of RNA polymerase II transcription subunit 12
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=srb8 PE=3 SV=1
Length = 1612
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 68 DFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRK 125
DF P N PE+ L + + GY + + +S ++ T + LK R + +
Sbjct: 208 DFSPWMGNHPEDVLNEQTAKQGYYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-Q 259
Query: 126 CLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKR 183
L ++ + +KR+ +++T P F P + + R+ W+ L+ +
Sbjct: 260 ILSSVFAAALEKRQG---------HNMVTAPSTFKPPPRVTLTDNKREAWLRDLANPNVP 310
Query: 184 LRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQL 243
LR L+ +PHG R R L + + VP+ RA W K N++R SGA + +
Sbjct: 311 LRKLSRTIPHGIRGRVLLDQCLTKWVPVGRAVWLAKCVGANEIRAFKRKGTSGA---LAI 367
Query: 244 SRTEIWTKDVIDYLQHLLD 262
W +D +Q L+
Sbjct: 368 GLEAKWVRDWTANVQQFLE 386
>sp|Q2U513|SRB8_ASPOR Mediator of RNA polymerase II transcription subunit 12
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=srb8 PE=3 SV=2
Length = 1594
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 68 DFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRK 125
DF P N PE+ L + + G+ + + +S ++ T + LK R + +
Sbjct: 207 DFSPWIGNHPEDVLNEQTAKQGHYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-Q 258
Query: 126 CLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKR 183
L ++ + +KR+ + SL+T P F P + + R+ W+ L+
Sbjct: 259 MLSSVFAAALEKRQ---------NHSLVTAPSTFKPPPRVTLTDNKREAWLRDLANPSVP 309
Query: 184 LRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQL 243
LR L+ +PHG R ++L + + +P+ RA W K N++R A G + L
Sbjct: 310 LRKLSRTIPHGIRGKALLDQCLNKGIPVNRAVWLAKCVGANEIR---AFKRKGTSGTLAL 366
Query: 244 SRTEIWTKDVIDYLQHLLD 262
W +D +Q L+
Sbjct: 367 GLEAKWVRDWTASVQQFLE 385
>sp|P25648|SRB8_YEAST Mediator of RNA polymerase II transcription subunit 12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRB8 PE=1 SV=2
Length = 1427
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 39/235 (16%)
Query: 67 PDFHPQTPNCPEETLTREYVQNGYK-------ETVEGLEEVREISLTQA----QTFNKPV 115
PDF P E+ + +V G+ E++ V E +TQ+ Q F+K
Sbjct: 31 PDFKPWEHTAAEDQILANFVAKGFYHTPMVNFESISARSSVHESLVTQSNILSQQFDK-- 88
Query: 116 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPL-SDSLLTKPGV-FPEQRPCGEEFRKKW 173
++K RE + +P S + L PG P + + ++ W
Sbjct: 89 IIKIRE-------------------DHINKIPSNSTTTLHGPGFQLPNRITLTDHRKETW 129
Query: 174 IEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANS 233
+ LS H L + +PHG ++R + E +PL RA W IK Y + +
Sbjct: 130 LHELSSSHTSLVKIGKFIPHGLKRRQVIEQCYLKFIPLKRAIWLIKCCYFIEWKSNHKKK 189
Query: 234 LS---GAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLY 285
S GA D I + + WT + L+ L+ F N+ + +Q R Q Y
Sbjct: 190 RSNAAGADDAISMHLLKDWTDTFVYILEKLI--FDMTNHYNDSQQLRTWKRQISY 242
>sp|Q5B3Y9|SRB8_EMENI Mediator of RNA polymerase II transcription subunit 12
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=srb8 PE=3 SV=2
Length = 1582
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 48/254 (18%)
Query: 20 GTSARDATRADSSSLPANFSINSRRSTQLTPYK---------LKCDKESLNSRLGPPDFH 70
G++A A+ +DSS + Q TP++ LK DK + DF
Sbjct: 171 GSNATKASESDSS-----------KKVQTTPFRVEVPSIAPALKGDKVA--------DFA 211
Query: 71 PQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRKCLR 128
P N PE+ L+ + V+ G+ + + +S ++ T + LK R + + L
Sbjct: 212 PWIGNHPEDILSEQTVKQGHYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-QMLS 263
Query: 129 AINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIEGLSQQHKRLRSLA 188
++ + +KR+ VP + KP P + + R+ W+ L+ LR L+
Sbjct: 264 SVFMAALEKRQNHNTINVPSN----FKP---PPRVTLTDNKREAWLRDLANPSVPLRRLS 316
Query: 189 DHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQLSRTEI 248
+PHG R ++L + + +P+ RA W +K N++R A G + +
Sbjct: 317 RTIPHGIRGKNLLDQCLSKWIPVNRAVWLVKCVGANEIR---ACKRKGTGGTLVVGSEVK 373
Query: 249 WTKDVIDYLQHLLD 262
W +D +Q L+
Sbjct: 374 WVRDWTSGVQQFLE 387
>sp|Q1EAK2|SRB8_COCIM Mediator of RNA polymerase II transcription subunit 12
OS=Coccidioides immitis (strain RS) GN=SRB8 PE=3 SV=2
Length = 1554
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 109/241 (45%), Gaps = 23/241 (9%)
Query: 41 NSRRSTQLTPYKLKCDKESLNSRLGPP-DFHPQTPNCPEETLTREYVQNGYKETVEGLEE 99
N+ Q TP+ ++ + + G P DF+P + PE++LT + + GY + V+
Sbjct: 173 NAGAEVQTTPFCIEVPEAAPIFDSGKPLDFYPWKGDHPEDSLTDQTAKQGYYDRVQ---- 228
Query: 100 VREISLTQAQTFNKP---VVLKCREAIRKCLRAINESRAQKRKAG-QVYGVPLSDSLLTK 155
+S ++ T +P V LK R + K L ++ + KR++ +V G K
Sbjct: 229 ---VSQNESNT-ARPSLYVQLKHRSGL-KLLSSVFTAAIDKRQSHCRVTGFST-----FK 278
Query: 156 PGVFPEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRAT 215
P P + + R+ W+ L+ LR L+ +PHG R R L + + +P+ RA
Sbjct: 279 P---PPRVTLTDIKRETWLRDLANPSVPLRRLSRTIPHGIRGRILLDQCVNKAIPIGRAV 335
Query: 216 WFIKVTYLNQVRHGSANSLSGA-QDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQ 274
W +K N++R S A +++ W+ +V +++ ++ + N + +
Sbjct: 336 WLVKCVGANEIRAFKRKGTSAAITHSLEVKWVRDWSINVHQFIESVVTACGTPNWASTMS 395
Query: 275 Y 275
Y
Sbjct: 396 Y 396
>sp|Q6CKZ5|SRB8_KLULA Mediator of RNA polymerase II transcription subunit 12
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SRB8 PE=3
SV=1
Length = 1322
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 67 PDFHPQTPNCPEETLTREYVQNGYK-------ETVEGLEEVR----EISLTQAQTFNKPV 115
PDF P E+ + +E+V GY ET+ ++ ++S +K +
Sbjct: 26 PDFDPWIHTKEEDKILKEFVAKGYYTASRVNFETISARSALQGSLPKVSSLLGDELSKII 85
Query: 116 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 175
++ +E R I +S + +GQ + +P +L ++ R W++
Sbjct: 86 EIREQEINRISTLDIEDSTRFTKWSGQDFHLPNRVTL-------------TDQKRNLWLQ 132
Query: 176 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLS 235
LS + LR L VPHG+RKR + E VP+ R W IK Y + + G +
Sbjct: 133 ELSSSNTSLRKLTKSVPHGFRKRHILEQCYTQFVPIYRVIWLIKSCYAIEWK-GMISKAK 191
Query: 236 GAQDKIQLSRT--EIWTKDVIDYLQHLLDE 263
G +L T + WT +++ L+ L+ E
Sbjct: 192 GETTHEELLSTLYKDWTDNMVLILEKLVFE 221
>sp|Q751D2|SRB8_ASHGO Mediator of RNA polymerase II transcription subunit 12 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=SRB8 PE=3 SV=2
Length = 1358
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 67 PDFHPQTPNCPEETLTREYVQNGY----KETVEGL-------EEVREISLTQAQTFNKPV 115
PDF P E+ + +V G+ K E + E + +++ A+ F+K V
Sbjct: 29 PDFDPWAHTEIEDKILLSFVAKGHYTSAKVNFESISARSSLQESLPKVAGMLAEQFSKVV 88
Query: 116 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGV-FPEQRPCGEEFRKKWI 174
L+ + I K ES K K + G PG P + ++ R +W+
Sbjct: 89 HLR-EQTINKVSGESEESIRGKAKFTDLAG----------PGFSLPNRVTLTDQRRTQWL 137
Query: 175 EGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSL 234
+ LS + L LA +PHG++++ + E +PL RA W IK +Y + + ++
Sbjct: 138 QELSSPNVSLSKLAKSIPHGFKRKQILEQCYMRQLPLQRAIWLIKSSYSIEWKSLTSKLK 197
Query: 235 SGAQDKIQLSRT-EIWTKDVIDYLQHLLDE 263
G ++ +S+ +WT ++ ++ LL E
Sbjct: 198 PGQTNEGVVSQLYNLWTNSMVSIMERLLFE 227
>sp|Q6FVM9|SRB8_CANGA Mediator of RNA polymerase II transcription subunit 12 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SRB8 PE=3 SV=1
Length = 1358
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 67 PDFHPQTPNCPEETLTREYVQNGYKETVE-GLEEVREISLTQAQ--TFNKPVVLKCREAI 123
PDF P E+ + +V GY T + E + S Q + + K E +
Sbjct: 29 PDFDPWKHTKEEDEILLNFVSKGYYSTSKVNFESISARSSLQDSLPKLSSTLSEKFSEVV 88
Query: 124 RKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGV-FPEQRPCGEEFRKKWIEGLSQQHK 182
R R IN + + + +D L P P + + ++ W++ LS +
Sbjct: 89 RIREREINTIKGNSKDG--MAASKFTD--LCGPDFKLPSRLTLTDHRKELWLQELSSPYT 144
Query: 183 RLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQ--DK 240
L + +PHG ++R + E +PL RA W IK Y + + G A + Q DK
Sbjct: 145 PLHKITSFIPHGLKRRQVLEQCYIKQIPLKRAVWLIKCCYSIEWKTGIAKYANSPQEKDK 204
Query: 241 IQLSRTEIWTKDVIDYLQHLLDEFFSRNN 269
+ WT + + L+ L+ E N
Sbjct: 205 FNAHLLKEWTDNFVHILEKLIFEMTQHYN 233
>sp|Q7SGG0|SRB8_NEUCR Mediator of RNA polymerase II transcription subunit 12
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=srb-8 PE=3 SV=1
Length = 1789
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 145/380 (38%), Gaps = 79/380 (20%)
Query: 65 GPPDFHPQTP---NCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCRE 121
G DF P + N PE+ ++ GY E +T + VL
Sbjct: 293 GCADFFPWSGTAGNHPEDQFNDTAIRVGYSEK----------QFVTPETQSAKTVLFHGL 342
Query: 122 AIRKCLRAINESRA----QKRKAGQVYGVPLSDSLLTKPGVF-PEQRPCGEEFRKK-WIE 175
R L A++ A +R AGQV T P F P R + +K+ W++
Sbjct: 343 KQRSGLNALSIFFAGVLWHRRNAGQV----------TAPSTFKPPPRVTLTDTKKEVWLK 392
Query: 176 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLS 235
L+ LR L+ +PHG R + L + + NVP+ RA W K N++R + L
Sbjct: 393 DLANSAIPLRKLSRSIPHGVRNKVLLDQCLNKNVPIDRAVWLAKCVGTNELR--TFRRLG 450
Query: 236 GAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDP 295
+ L W KD +++ ++ F
Sbjct: 451 KGNNASVLEGERKWLKDWTLVIENFIERVF------------------------------ 480
Query: 296 AAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDKELLEI-LQLVLPI 354
+ E + K Y ++L AEGL+ + ++W ++ L+ ++ + +++
Sbjct: 481 ---FSFGEQNWKAKVNYAIQLAAHLYAEGLMDREHYLDWTVSSLESSHHSQLPMWIIIAQ 537
Query: 355 IYGVLETVVSSQTYVRSL-VGIATHFIREPSPGGSDLVDNSRRAYTISALAEMLRYLILA 413
IY + ++ + Y R L + +H+ + D+ +S L+ +L L++A
Sbjct: 538 IY--WKDLLRLRKYGRRLATALISHYHVIHAHEDRDIY-----VPLLSKLSHLLGTLMVA 590
Query: 414 VPDTFVALDCFPLPSCVVSY 433
P+ FV+ PS V Y
Sbjct: 591 TPENFVS------PSVWVKY 604
>sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription subunit 12
OS=Drosophila melanogaster GN=kto PE=1 SV=2
Length = 2531
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 43/222 (19%)
Query: 62 SRLGPPDFHPQTPNCPEETLTREYVQNGYKETVE-----GLEEVREISLTQAQTFNKPVV 116
+RLGPPD +PQ E+ LT V++G+ T G ++ ++ F V+
Sbjct: 14 TRLGPPDIYPQDAKQREDELTPTNVKHGFTTTPPLSDEFGTAHNSNVNASKVSAFFSGVL 73
Query: 117 LKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFP--EQRPCGEEFRKKWI 174
K E L + ++ +K++ K +P +R C + W
Sbjct: 74 AKKEE-----LMTLPDTGRKKQQIN------------CKDNFWPVSPRRKCTVD---AWF 113
Query: 175 EGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSL 234
+ L+ +K L SLA P +K +F L N V + RATWFIK++ +A +L
Sbjct: 114 KDLA-GNKPLLSLAKRAPSFNKKEEIFITLCENQVNMQRATWFIKLS--------AAYTL 164
Query: 235 SGAQDKIQ----LSRTEIWTKDVIDYLQHL---LDEFFSRNN 269
S + K + WT ++I +++ L L E++ +N+
Sbjct: 165 SFTESKNKKRSIYDPAAEWTGNMIKFMKELLPKLQEYYQQNH 206
>sp|A3GF47|SRB8_PICST Mediator of RNA polymerase II transcription subunit 12
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=SRB8 PE=3 SV=2
Length = 1654
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 33/238 (13%)
Query: 67 PDF-----HPQTPNCPEETLTRE-----YVQNGYKET-VEGLEEVREISLTQAQTFNKPV 115
PD+ H PN +E ++ Y+ GY ET V E +L QA F+
Sbjct: 77 PDYKPWKDHTALPNDKKEQEHQKLNNAAYLNKGYFETPVVANEYYSARNLIQATVFSSTE 136
Query: 116 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 175
C E +++ + + + A K + + + + P P + ++ W++
Sbjct: 137 --NCNEVLKELSQHL--ANAYKTRNEIINKIKYESNNFKIP---PRVTLTASK-KESWLK 188
Query: 176 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQV-----RHGS 230
L+ L +A+ +PHG R + L + + +VP+ RA WF K ++ +H S
Sbjct: 189 DLANPDLALSKIAEKIPHGIRNKILIDAVCNKSVPINRALWFTKCVLFGELVALRRKHQS 248
Query: 231 ANSLS---------GAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDR 279
SL+ +K ++ + WT+ V DY+ E + N QY ++
Sbjct: 249 RMSLNSPIPQSLDINTPEKFEIHWLQEWTQQVADYIYKFSKESSNFNTIERKQYYMNK 306
>sp|Q9P6L8|SRB8_SCHPO Mediator of RNA polymerase II transcription subunit 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srb8 PE=1 SV=2
Length = 1134
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 166 GEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQ 225
E R +W++GLS L SL +PHG + +L++ VP RA WFI+ +N+
Sbjct: 130 SESRRDRWLQGLSDPMVPLSSLIKTIPHGLWGEDILRMLVKFRVPFTRAIWFIRCAGVNE 189
Query: 226 VRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFS 266
R K+Q + W K+ D L F S
Sbjct: 190 AR--------SFLRKVQTTDITEWVKNWTDVAAGFLISFIS 222
>sp|Q0V6H6|SRB8_PHANO Mediator of RNA polymerase II transcription subunit 12
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=SRB8 PE=3 SV=1
Length = 1547
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 16/205 (7%)
Query: 63 RLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCREA 122
+LG P+ P + P E + G E+ +L +A NKP ++
Sbjct: 120 KLGVPETVPIPVHFPGEKAADVFPWTGTNA-----EDTLSEALVKAGVSNKPQIMNETNT 174
Query: 123 IRKCLRAINESRAQKRKAGQVYGVPL----SDSLLTKPGVF--PEQRPCGEEFRKKWIEG 176
R L + ++++ ++ L + L P F P + + R+ W+
Sbjct: 175 ARPSLWSNLKNKSGITTLSTLFVAVLEKRQQNGRLQTPNTFKPPPRLTLRDSTREGWLHD 234
Query: 177 LSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSG 236
L+ LR L+ +PHG + L + + N+PL RA W K +N++R A+ G
Sbjct: 235 LANPTVSLRRLSRTIPHGLTGKVLLDQCLNKNIPLPRALWLAKCVGINELR---AHKRKG 291
Query: 237 AQDKIQLSRTEIWTKDVIDYLQHLL 261
+ R WT V +L ++
Sbjct: 292 QAGTVTWGRG--WTSSVEQFLDSVI 314
>sp|A2AGH6|MED12_MOUSE Mediator of RNA polymerase II transcription subunit 12 OS=Mus
musculus GN=Med12 PE=2 SV=1
Length = 2190
Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 25/199 (12%)
Query: 63 RLGPPDFHPQTPNCPEETLTREYVQNGY--KETVEGLEE--VREISLTQAQTFNKPVVLK 118
RLGPPD +PQ P E+ LT V+ G+ + V G E + ++ A+ +
Sbjct: 18 RLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAK-----ISSN 72
Query: 119 CREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIEGLS 178
I + LR S +RK SL+ + F + W L+
Sbjct: 73 FSSIIAEKLRCNTLSDTGRRK-----------SLMNQKDNFWLVTARSQSAINTWFTDLA 121
Query: 179 QQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQ 238
K L LA VP +K +F L + VP++RA W IK+T + +A S + +
Sbjct: 122 GT-KPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMT----CAYYAAMSETKVK 176
Query: 239 DKIQLSRTEIWTKDVIDYL 257
K WT+ + YL
Sbjct: 177 KKNTADPFTEWTQIITKYL 195
>sp|Q6C229|SRB8_YARLI Mediator of RNA polymerase II transcription subunit 12 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SRB8 PE=3 SV=2
Length = 1362
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 153 LTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVP 210
+T PG F P + + R+ W++ L+ LR L+ +PHG R + L + +
Sbjct: 123 ITTPGTFKPPPRVTLTDHKREAWLKDLANPAVPLRKLSRTIPHGIRNKVLLDQCCAKRIA 182
Query: 211 LLRATWFIKVTYLNQVR---HGSANSLSGAQDKIQLSRTEIWTKDVIDYLQ 258
RA WF + N++R + + + I L WT+ V+D LQ
Sbjct: 183 PSRAVWFARCVGANELRGLKRKGHHQMGNMSEAIWLQE---WTECVVDVLQ 230
>sp|Q86YW9|MD12L_HUMAN Mediator of RNA polymerase II transcription subunit 12-like protein
OS=Homo sapiens GN=MED12L PE=1 SV=2
Length = 2145
Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 104/295 (35%), Gaps = 69/295 (23%)
Query: 63 RLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCREA 122
RLGPPD +PQ P E+ LT V+ G+ N+P
Sbjct: 18 RLGPPDVYPQDPKQKEDELTAVNVKQGFN--------------------NQPAFTGDEHG 57
Query: 123 IRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPE---QRPCGEEFRKKWIEGLSQ 179
+ + IN S K G + L++ L K F + ++P W+
Sbjct: 58 SARNI-VINPS-----KIGAYFSSILAEKL--KLNTFQDTGKKKPQVNAKDNYWLVTARS 109
Query: 180 Q------------HKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT--YLNQ 225
Q +K L LA VP +K +F L + +VP++RATW IK+T Y +
Sbjct: 110 QSAIHSWFSDLAGNKPLSILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSA 169
Query: 226 VRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLY 285
+ ++ WT+ YL+ L + Y
Sbjct: 170 ISEAKIKKRQAPDPNLE------WTQISTRYLREQLAKI-----------------SDFY 206
Query: 286 TGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLK 340
+ P V E ++ +W Y +L EG+L + W+L+ L+
Sbjct: 207 HMASSTGDGPVPVPPEVEQAMK-QWEYNEKLAFHMFQEGMLEKHEYLTWILDVLE 260
>sp|Q8BQM9|MD12L_MOUSE Mediator of RNA polymerase II transcription subunit 12-like protein
OS=Mus musculus GN=Med12l PE=1 SV=2
Length = 2157
Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 108/298 (36%), Gaps = 75/298 (25%)
Query: 63 RLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCREA 122
RLGPPD +PQ P E+ LT V+ G+ N+P
Sbjct: 18 RLGPPDVYPQDPKQKEDELTAVNVKQGFN--------------------NQPAFTGDEHG 57
Query: 123 IRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPE---QRPCGEEFRKKWIEGLSQ 179
+ + IN S K G + L++ L K F + ++P W+
Sbjct: 58 SARNI-VINPS-----KIGAYFSSILAEKL--KLNTFQDTGKKKPQVNAKDNYWLVTARS 109
Query: 180 Q------------HKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT--YLNQ 225
Q +K L LA VP +K +F L + +VP++RATW IK+T Y +
Sbjct: 110 QSAIHSWFSDLAGNKPLAILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSA 169
Query: 226 VRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLL---DEFFSRNNSHSTQYSRDRSPQ 282
+ ++ WT+ YL+ L +F+ +S
Sbjct: 170 ISEAKIKKRQAPDPNLE------WTQISTRYLREQLVKISDFYHMASS------------ 211
Query: 283 TLYTGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLK 340
TG P V E ++ +W Y +L EG+L + W+L+ L+
Sbjct: 212 ---TG-----DGPVPVPPEVEQAMK-QWEYNEKLAFHMFQEGMLEKHEYLTWILDVLE 260
>sp|Q93074|MED12_HUMAN Mediator of RNA polymerase II transcription subunit 12 OS=Homo
sapiens GN=MED12 PE=1 SV=4
Length = 2177
Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 63 RLGPPDFHPQTPNCPEETLTREYVQNGY--KETVEGLEE--VREISLTQAQ---TFNKPV 115
RLGPPD +PQ P E+ LT V+ G+ + V G E + +S A+ F+ +
Sbjct: 18 RLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVSFNPAKISSNFSSII 77
Query: 116 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 175
K R + ++ +K + Q L + + W
Sbjct: 78 AEKLR------CNTLPDTGRRKPQVNQKDNFWLVTAR-------------SQSAINTWFT 118
Query: 176 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT 221
L+ K L LA VP +K +F L + VP++RA W IK+T
Sbjct: 119 DLAGT-KPLTQLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMT 163
>sp|Q5RCU2|MED12_PONPY Mediator of RNA polymerase II transcription subunit 12 OS=Pongo
pygmaeus GN=MED12 PE=2 SV=2
Length = 2181
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 63 RLGPPDFHPQTPNCPEETLTREYVQNGY--KETVEGLEE--VREISLTQAQ---TFNKPV 115
RLGPPD +PQ P E+ LT V+ G+ + V G E + +S A+ F+ +
Sbjct: 18 RLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVSFNPAKISSNFSSII 77
Query: 116 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 175
K R + ++ +K + Q L + + W
Sbjct: 78 AEKLR------CNTLPDTGRRKPQVNQKDNFWLVTAR-------------SQSAINTWFT 118
Query: 176 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT 221
L+ K L LA VP +K +F L + VP++RA W IK+T
Sbjct: 119 DLAGT-KPLTQLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMT 163
>sp|Q2QCI8|MED12_DANRE Mediator of RNA polymerase II transcription subunit 12 OS=Danio
rerio GN=med12 PE=2 SV=1
Length = 2173
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 182 KRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKI 241
K L LA VP +K +F L + +VP++R+ W IK+T + +A + + + +
Sbjct: 124 KPLTQLAKKVPIFSKKEEVFGYLAKYSVPVMRSAWMIKMT----CAYHAAITENKMKKRH 179
Query: 242 QLSRTEIWTKDVIDYLQHLLD---EFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDPAAV 298
+ WT + YL L EF+ ++ S GSP + PA V
Sbjct: 180 VIDPCIEWTPIITKYLWEQLQKVAEFYRQSPSQG-------------CGSPLP-APPAEV 225
Query: 299 INSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVL 336
+ + +W Y +L + +G+L + WVL
Sbjct: 226 ETAMK-----QWEYNEKLAMFMFQDGMLDRHEFLTWVL 258
>sp|Q6BUQ1|SRB8_DEBHA Mediator of RNA polymerase II transcription subunit 12
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SRB8 PE=3 SV=2
Length = 1661
Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 170 RKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIK 219
++ W+ L+ + L ++++ +PHG + + L ++L N+P RA W K
Sbjct: 178 KEAWLRDLANPDEPLSNISNKLPHGIKNKMLVDILCSKNIPTSRALWLTK 227
>sp|Q8BFW7|LPP_MOUSE Lipoma-preferred partner homolog OS=Mus musculus GN=Lpp PE=1 SV=1
Length = 613
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 2151 LPSVRCSLTC------QPPSVPVAALASLQPSISVSGASPGNLNLPQRNPVPLARSATNT 2204
L S+ L C +PP +++AS P +S + +PQ+ P+ +AT
Sbjct: 125 LTSILADLECSSPYKPRPPQGSASSIAS--PPVSTPVTGHKRMVIPQQPPL----TATKK 178
Query: 2205 GKSKPIPLQQDSDMEIDPWTLLEDGAGSGPSSSNTAAIGSGDQANLQAAS 2254
+KP P Q + + + P L+ P+S TA+ S N+Q S
Sbjct: 179 SATKPQPAPQAAPIPVTPIGTLKPQPQPVPASYTTASTSSRPTFNVQVKS 228
>sp|Q5M4T8|COAA_STRT2 Pantothenate kinase OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=coaA PE=3 SV=1
Length = 306
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 705 LVRAGIF----YPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEA 758
L+ GI +P++Y L+++ LD NG D+N H I ++PGL +++
Sbjct: 132 LIDKGILNRKGFPESYDMPLLLN-FLDTVKNGGDVNIPVYSHEIYDIVPGLTQKISQPNF 190
Query: 759 RIAEGSQLSEAIHVYSN--ERRLVLHELLFDQSIYVNVAAQNQK 800
I EG I+V+ N +RL + + FD SIY++ +N K
Sbjct: 191 LIVEG------INVFQNPINQRLYMSD-YFDFSIYIDADVKNIK 227
>sp|Q5M079|COAA_STRT1 Pantothenate kinase OS=Streptococcus thermophilus (strain CNRZ
1066) GN=coaA PE=3 SV=1
Length = 306
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 705 LVRAGIF----YPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEA 758
L+ GI +P++Y L+++ LD NG D+N H I ++PGL +++
Sbjct: 132 LIDKGILNRKGFPESYDMPLLLN-FLDTVKNGGDVNIPVYSHEIYDIVPGLTQKISQPNF 190
Query: 759 RIAEGSQLSEAIHVYSN--ERRLVLHELLFDQSIYVNVAAQNQK 800
I EG I+V+ N +RL + + FD SIY++ +N K
Sbjct: 191 LIVEG------INVFQNPINQRLYMSD-YFDFSIYIDADVKNIK 227
>sp|Q03L30|COAA_STRTD Pantothenate kinase OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=coaA PE=3 SV=1
Length = 306
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 705 LVRAGIF----YPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEA 758
L+ GI +P++Y L+++ LD NG D+N H I ++PGL +++
Sbjct: 132 LIDKGILNRKGFPESYDMPLLLN-FLDTVKNGGDVNIPVYSHEIYDIVPGLTQKISQPNF 190
Query: 759 RIAEGSQLSEAIHVYSN--ERRLVLHELLFDQSIYVNVAAQNQK 800
I EG I+V+ N +RL + + FD SIY++ +N K
Sbjct: 191 LIVEG------INVFQNPINQRLYMSD-YFDFSIYIDADVKNIK 227
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 34.7 bits (78), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 1641 GLDLQLKSMAFVPLRA-RLFLNAIIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLL 1699
G DL + VP+ R+ + + K+P+ + KP+ R+ G + + R N+ LL
Sbjct: 703 GFDLPKRRWIRVPMTIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLL 762
Query: 1700 DKLVHVLDSLQPAKFHWQWVELR-LLLNEQALIDRLENHEMSLAEAIRSLSPSPEKAAAS 1758
D + + VE++ L+ E++L RLE H M+ + ++ L E+ +
Sbjct: 763 DPI---------QDMEIKTVEMKELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDA 813
Query: 1759 ENENN 1763
E N
Sbjct: 814 VKELN 818
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 831,590,789
Number of Sequences: 539616
Number of extensions: 35474343
Number of successful extensions: 97878
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 97729
Number of HSP's gapped (non-prelim): 127
length of query: 2277
length of database: 191,569,459
effective HSP length: 134
effective length of query: 2143
effective length of database: 119,260,915
effective search space: 255576140845
effective search space used: 255576140845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)