Query 000090
Match_columns 2277
No_of_seqs 153 out of 186
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:41:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lqo_A Putative glutaredoxin R 29.8 11 0.00036 37.1 -0.1 26 885-912 8-33 (92)
2 1rw1_A Conserved hypothetical 17.2 31 0.0011 34.5 0.3 25 885-911 4-28 (114)
3 3rdw_A Putative arsenate reduc 14.5 50 0.0017 33.8 1.0 26 884-911 8-33 (121)
4 3dd7_B PHD, prevent HOST death 14.2 57 0.002 26.0 1.0 14 1630-1643 3-16 (23)
5 3f0i_A Arsenate reductase; str 13.7 50 0.0017 33.7 0.8 26 884-911 7-32 (119)
6 1s3c_A Arsenate reductase; ARS 13.3 52 0.0018 34.6 0.8 26 885-912 6-31 (141)
7 2kok_A Arsenate reductase; bru 12.7 42 0.0014 33.9 -0.1 26 885-912 9-34 (120)
8 3gkx_A Putative ARSC family re 12.5 48 0.0016 33.8 0.2 27 884-912 7-33 (120)
9 3l4n_A Monothiol glutaredoxin- 12.2 49 0.0017 34.2 0.2 17 885-902 18-34 (127)
10 3fz4_A Putative arsenate reduc 12.1 48 0.0016 33.8 0.1 29 882-912 4-32 (120)
No 1
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=29.75 E-value=11 Score=37.07 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.5
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceec
Q 000090 885 SEGTPGCEDCKRVKRQKLCEDRSSVLQI 912 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl~~~~~~~~q~ 912 (2277)
++.+++|..|.+||+- | ++++-.|.-
T Consensus 8 vYs~~~Cp~C~~aK~~-L-~~~gi~y~~ 33 (92)
T 2lqo_A 8 IYTTSWCGYCLRLKTA-L-TANRIAYDE 33 (92)
T ss_dssp EEECTTCSSHHHHHHH-H-HHTTCCCEE
T ss_pred EEcCCCCHhHHHHHHH-H-HhcCCceEE
Confidence 6779999999999998 7 566655553
No 2
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=17.20 E-value=31 Score=34.53 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=19.0
Q ss_pred CCCCCCchhhhhhhhhcccccCCCcee
Q 000090 885 SEGTPGCEDCKRVKRQKLCEDRSSVLQ 911 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl~~~~~~~~q 911 (2277)
++.+|+|..|++||+- | ++++-.|+
T Consensus 4 iY~~~~C~~C~kak~~-L-~~~gi~~~ 28 (114)
T 1rw1_A 4 LYGIKACDTMKKARTW-L-DEHKVAYD 28 (114)
T ss_dssp EEECSSCHHHHHHHHH-H-HHTTCCEE
T ss_pred EEECCCChHHHHHHHH-H-HHCCCceE
Confidence 4678999999999998 7 55554444
No 3
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=14.52 E-value=50 Score=33.76 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=20.8
Q ss_pred cCCCCCCchhhhhhhhhcccccCCCcee
Q 000090 884 LSEGTPGCEDCKRVKRQKLCEDRSSVLQ 911 (2277)
Q Consensus 884 ~~~~~~gce~c~r~krqkl~~~~~~~~q 911 (2277)
+++.+|+|..|++||+- | ++++-.|+
T Consensus 8 ~iY~~p~C~~c~ka~~~-L-~~~gi~~~ 33 (121)
T 3rdw_A 8 TIYHNPRCSKSRETLAL-V-EQQGITPQ 33 (121)
T ss_dssp EEECCTTCHHHHHHHHH-H-HTTTCCCE
T ss_pred EEEECCCCHHHHHHHHH-H-HHcCCCcE
Confidence 36789999999999998 7 66665554
No 4
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=14.16 E-value=57 Score=26.00 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=12.2
Q ss_pred hHHHHHHHhhcCcc
Q 000090 1630 DAEFAAMLELNGLD 1643 (2277)
Q Consensus 1630 d~efa~~le~~~~d 1643 (2277)
|+|||+++..||..
T Consensus 3 DaEFaaIm~~hg~t 16 (23)
T 3dd7_B 3 DAEFASLFDTLDST 16 (26)
T ss_pred hhHHHHHHHHHhHH
Confidence 89999999998854
No 5
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=13.73 E-value=50 Score=33.68 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=20.5
Q ss_pred cCCCCCCchhhhhhhhhcccccCCCcee
Q 000090 884 LSEGTPGCEDCKRVKRQKLCEDRSSVLQ 911 (2277)
Q Consensus 884 ~~~~~~gce~c~r~krqkl~~~~~~~~q 911 (2277)
+++.+|+|..|++||+- | ++++-.|+
T Consensus 7 ~iY~~p~C~~c~ka~~~-L-~~~gi~~~ 32 (119)
T 3f0i_A 7 VIYHNPKCSKSRETLAL-L-ENQGIAPQ 32 (119)
T ss_dssp EEECCTTCHHHHHHHHH-H-HHTTCCCE
T ss_pred EEEECCCChHHHHHHHH-H-HHcCCceE
Confidence 46789999999999988 7 55655554
No 6
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=13.27 E-value=52 Score=34.57 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=20.6
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceec
Q 000090 885 SEGTPGCEDCKRVKRQKLCEDRSSVLQI 912 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl~~~~~~~~q~ 912 (2277)
++.+|+|-.|++||+- | ++++-.|+-
T Consensus 6 iY~~p~C~~crkak~~-L-~~~gi~~~~ 31 (141)
T 1s3c_A 6 IYHNPASGTSRNTLEM-I-RNSGTEPTI 31 (141)
T ss_dssp EECCTTCHHHHHHHHH-H-HHTTCCCEE
T ss_pred EEECCCChHHHHHHHH-H-HHcCCCEEE
Confidence 6789999999999998 7 666655554
No 7
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=12.73 E-value=42 Score=33.89 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceec
Q 000090 885 SEGTPGCEDCKRVKRQKLCEDRSSVLQI 912 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl~~~~~~~~q~ 912 (2277)
++.+|+|..|++||+- | ++++-.|+-
T Consensus 9 iY~~~~C~~C~ka~~~-L-~~~gi~y~~ 34 (120)
T 2kok_A 9 IYGIKNCDTMKKARIW-L-EDHGIDYTF 34 (120)
T ss_dssp EEECSSCHHHHHHHHH-H-HHHTCCEEE
T ss_pred EEECCCChHHHHHHHH-H-HHcCCcEEE
Confidence 6789999999999988 7 555555443
No 8
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=12.54 E-value=48 Score=33.84 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=20.5
Q ss_pred cCCCCCCchhhhhhhhhcccccCCCceec
Q 000090 884 LSEGTPGCEDCKRVKRQKLCEDRSSVLQI 912 (2277)
Q Consensus 884 ~~~~~~gce~c~r~krqkl~~~~~~~~q~ 912 (2277)
+++.+|+|..|++||+- | ++++-.|+-
T Consensus 7 ~iY~~p~C~~c~ka~~~-L-~~~gi~~~~ 33 (120)
T 3gkx_A 7 LFLQYPACSTCQKAKKW-L-IENNIEYTN 33 (120)
T ss_dssp EEEECTTCHHHHHHHHH-H-HHTTCCCEE
T ss_pred EEEECCCChHHHHHHHH-H-HHcCCceEE
Confidence 36789999999999987 7 565554443
No 9
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=12.23 E-value=49 Score=34.16 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.8
Q ss_pred CCCCCCchhhhhhhhhcc
Q 000090 885 SEGTPGCEDCKRVKRQKL 902 (2277)
Q Consensus 885 ~~~~~gce~c~r~krqkl 902 (2277)
+..+++|..|.+||+- |
T Consensus 18 vysk~~Cp~C~~ak~l-L 34 (127)
T 3l4n_A 18 IFSKSTCSYSKGMKEL-L 34 (127)
T ss_dssp EEECTTCHHHHHHHHH-H
T ss_pred EEEcCCCccHHHHHHH-H
Confidence 5568999999999987 7
No 10
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=12.09 E-value=48 Score=33.81 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=22.1
Q ss_pred cccCCCCCCchhhhhhhhhcccccCCCceec
Q 000090 882 MDLSEGTPGCEDCKRVKRQKLCEDRSSVLQI 912 (2277)
Q Consensus 882 ~d~~~~~~gce~c~r~krqkl~~~~~~~~q~ 912 (2277)
|=+++.+|+|..|++||+- | ++++-.|+-
T Consensus 4 Mi~iY~~~~C~~c~ka~~~-L-~~~gi~~~~ 32 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAE-L-DDLAWDYDA 32 (120)
T ss_dssp SEEEEECSSCHHHHHHHHH-H-HHHTCCEEE
T ss_pred eEEEEeCCCChHHHHHHHH-H-HHcCCceEE
Confidence 4457889999999999987 7 666655543
Done!