Query 000092
Match_columns 2267
No_of_seqs 942 out of 7326
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 17:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0368 Acetyl-CoA carboxylase 100.0 0E+00 0E+00 4501.5 165.0 2146 22-2263 28-2196(2196)
2 COG4770 Acetyl/propionyl-CoA c 100.0 1E-122 3E-127 1113.1 54.7 626 47-755 1-644 (645)
3 PF08326 ACC_central: Acetyl-C 100.0 2E-126 5E-131 1244.8 0.5 678 755-1498 1-708 (708)
4 KOG0238 3-Methylcrotonyl-CoA c 100.0 1E-115 3E-120 1031.7 54.3 635 51-755 1-670 (670)
5 COG1038 PycA Pyruvate carboxyl 100.0 1.8E-97 4E-102 907.7 54.8 446 46-551 5-456 (1149)
6 KOG0369 Pyruvate carboxylase [ 100.0 2.4E-88 5.1E-93 810.4 45.8 440 49-551 34-479 (1176)
7 PRK08654 pyruvate carboxylase 100.0 3.3E-86 7.1E-91 845.2 51.5 483 47-597 1-495 (499)
8 COG4799 Acetyl-CoA carboxylase 100.0 2.9E-86 6.2E-91 816.4 34.5 421 1587-2151 79-509 (526)
9 COG0439 AccC Biotin carboxylas 100.0 1.4E-84 3.1E-89 804.7 45.3 442 47-554 1-446 (449)
10 TIGR01235 pyruv_carbox pyruvat 100.0 6.1E-83 1.3E-87 864.4 58.1 443 50-552 1-451 (1143)
11 PRK12999 pyruvate carboxylase; 100.0 1.5E-80 3.1E-85 846.1 62.6 448 45-552 2-455 (1146)
12 PRK07178 pyruvate carboxylase 100.0 1.3E-76 2.8E-81 756.6 50.9 462 47-576 1-468 (472)
13 PRK12833 acetyl-CoA carboxylas 100.0 1.4E-75 3.1E-80 746.1 50.2 446 45-556 2-451 (467)
14 PRK08463 acetyl-CoA carboxylas 100.0 3E-75 6.4E-80 744.6 51.3 446 47-558 1-450 (478)
15 PRK05586 biotin carboxylase; V 100.0 1.1E-71 2.3E-76 708.3 47.9 441 47-553 1-445 (447)
16 PF01039 Carboxyl_trans: Carbo 100.0 6.6E-73 1.4E-77 722.0 29.3 422 1586-2151 44-479 (493)
17 PLN02820 3-methylcrotonyl-CoA 100.0 1.7E-71 3.7E-76 707.2 41.6 422 1587-2149 117-553 (569)
18 TIGR01117 mmdA methylmalonyl-C 100.0 1.4E-71 3.1E-76 706.9 40.5 416 1586-2149 69-494 (512)
19 TIGR00514 accC acetyl-CoA carb 100.0 3.4E-70 7.4E-75 695.1 49.0 442 47-554 1-446 (449)
20 PRK08462 biotin carboxylase; V 100.0 2.1E-68 4.6E-73 678.3 49.8 440 46-553 2-445 (445)
21 PRK08591 acetyl-CoA carboxylas 100.0 6.3E-68 1.4E-72 675.1 50.1 443 47-555 1-447 (451)
22 KOG0540 3-Methylcrotonyl-CoA c 100.0 9.3E-68 2E-72 621.5 29.5 416 1585-2151 98-522 (536)
23 TIGR02712 urea_carbox urea car 100.0 1.8E-65 3.8E-70 702.1 55.6 439 48-552 1-443 (1201)
24 PRK06111 acetyl-CoA carboxylas 100.0 6.9E-59 1.5E-63 592.1 49.9 444 47-557 1-448 (450)
25 PF02786 CPSase_L_D2: Carbamoy 100.0 3.9E-40 8.4E-45 378.5 22.7 205 172-397 1-209 (211)
26 TIGR01142 purT phosphoribosylg 100.0 1.5E-37 3.2E-42 388.2 42.9 373 50-520 1-380 (380)
27 TIGR01369 CPSaseII_lrg carbamo 100.0 2.9E-38 6.2E-43 435.1 39.5 377 45-516 3-401 (1050)
28 PLN02735 carbamoyl-phosphate s 100.0 9.3E-38 2E-42 428.2 36.8 308 47-398 573-906 (1102)
29 PLN02948 phosphoribosylaminoim 100.0 1.6E-36 3.4E-41 393.6 42.8 380 46-519 20-401 (577)
30 PRK09288 purT phosphoribosylgl 100.0 3.1E-35 6.6E-40 369.3 43.3 379 49-521 13-394 (395)
31 PLN02735 carbamoyl-phosphate s 100.0 7.7E-36 1.7E-40 409.4 40.8 309 45-399 20-352 (1102)
32 PRK06019 phosphoribosylaminoim 100.0 6.9E-35 1.5E-39 363.3 41.4 364 48-515 2-366 (372)
33 PRK05294 carB carbamoyl phosph 100.0 9.5E-35 2.1E-39 401.8 40.9 308 46-399 5-335 (1066)
34 TIGR01161 purK phosphoribosyla 100.0 5.3E-33 1.1E-37 344.3 40.1 293 50-397 1-294 (352)
35 PRK12815 carB carbamoyl phosph 100.0 2.4E-33 5.2E-38 386.6 40.3 309 46-400 5-335 (1068)
36 PRK07206 hypothetical protein; 100.0 8.2E-33 1.8E-37 349.7 37.2 381 47-512 1-403 (416)
37 TIGR01369 CPSaseII_lrg carbamo 100.0 8.9E-33 1.9E-37 381.0 34.5 305 48-399 554-872 (1050)
38 TIGR00877 purD phosphoribosyla 100.0 9.1E-32 2E-36 341.0 39.9 381 50-521 2-410 (423)
39 PRK00885 phosphoribosylamine-- 100.0 7.2E-32 1.6E-36 341.6 37.6 379 50-521 2-406 (420)
40 PRK02186 argininosuccinate lya 100.0 2.6E-31 5.6E-36 362.4 41.7 375 48-520 2-395 (887)
41 PRK06395 phosphoribosylamine-- 100.0 3.9E-31 8.6E-36 334.6 40.4 384 47-521 1-410 (435)
42 PLN02257 phosphoribosylamine-- 100.0 4.2E-31 9E-36 333.8 38.3 383 52-521 1-413 (434)
43 PRK12815 carB carbamoyl phosph 100.0 9.2E-32 2E-36 371.1 35.1 325 47-422 554-911 (1068)
44 PRK05294 carB carbamoyl phosph 100.0 2.3E-31 4.9E-36 368.4 37.6 305 47-398 553-871 (1066)
45 PRK13789 phosphoribosylamine-- 100.0 4.5E-30 9.7E-35 324.3 39.8 380 48-521 4-414 (426)
46 PRK12767 carbamoyl phosphate s 100.0 8.1E-31 1.7E-35 321.0 31.0 293 48-397 1-298 (326)
47 PRK13790 phosphoribosylamine-- 100.0 1.4E-30 3.1E-35 325.1 33.5 334 116-521 12-364 (379)
48 COG0458 CarB Carbamoylphosphat 100.0 7.6E-29 1.6E-33 298.6 34.7 301 56-399 14-321 (400)
49 PRK05784 phosphoribosylamine-- 100.0 5.8E-28 1.3E-32 308.0 41.0 380 50-521 2-434 (486)
50 COG0027 PurT Formate-dependent 100.0 4.5E-28 9.8E-33 277.7 34.2 375 49-521 13-394 (394)
51 COG0026 PurK Phosphoribosylami 100.0 3.1E-27 6.7E-32 281.6 38.0 295 48-397 1-296 (375)
52 PF15632 ATPgrasp_Ter: ATP-gra 100.0 2.8E-28 6.1E-33 294.6 26.3 288 53-397 3-309 (329)
53 PRK05724 acetyl-CoA carboxylas 100.0 1.6E-28 3.4E-33 292.7 20.1 213 1856-2152 67-288 (319)
54 COG0777 AccD Acetyl-CoA carbox 100.0 1.8E-29 3.9E-34 286.6 11.0 189 1568-1831 92-281 (294)
55 TIGR00513 accA acetyl-CoA carb 100.0 3.7E-28 8E-33 289.3 21.7 212 1856-2152 67-288 (316)
56 PRK06524 biotin carboxylase-li 100.0 5.4E-27 1.2E-31 293.3 28.5 250 119-397 92-356 (493)
57 CHL00174 accD acetyl-CoA carbo 100.0 1.3E-28 2.9E-33 289.8 13.1 189 1569-1831 104-293 (296)
58 PRK12319 acetyl-CoA carboxylas 99.9 1.8E-26 4E-31 270.3 21.1 166 1859-2057 16-185 (256)
59 CHL00198 accA acetyl-CoA carbo 99.9 1.5E-26 3.3E-31 275.3 19.9 211 1859-2152 72-291 (322)
60 PLN03230 acetyl-coenzyme A car 99.9 1.6E-26 3.4E-31 279.0 19.3 200 1880-2152 149-358 (431)
61 TIGR03134 malonate_gamma malon 99.9 6.8E-26 1.5E-30 263.0 21.9 183 1876-2139 5-192 (238)
62 PRK14569 D-alanyl-alanine synt 99.9 4.6E-25 9.9E-30 267.5 29.8 271 50-391 5-292 (296)
63 PRK06849 hypothetical protein; 99.9 6.9E-26 1.5E-30 284.5 23.4 279 47-376 3-284 (389)
64 PRK07189 malonate decarboxylas 99.9 2.1E-26 4.5E-31 273.3 15.6 174 1585-1833 54-241 (301)
65 TIGR03133 malonate_beta malona 99.9 4E-26 8.7E-31 268.5 15.1 172 1586-1829 46-231 (274)
66 COG0151 PurD Phosphoribosylami 99.9 1E-23 2.2E-28 254.7 35.7 333 118-521 50-411 (428)
67 TIGR00515 accD acetyl-CoA carb 99.9 6.8E-26 1.5E-30 268.9 16.2 188 1570-1832 92-280 (285)
68 PRK01372 ddl D-alanine--D-alan 99.9 3E-24 6.5E-29 261.0 29.7 276 47-390 3-296 (304)
69 PRK01966 ddl D-alanyl-alanine 99.9 9.5E-25 2.1E-29 268.8 24.5 231 131-390 81-327 (333)
70 PRK05654 acetyl-CoA carboxylas 99.9 2.6E-25 5.7E-30 265.1 16.0 189 1569-1832 92-281 (292)
71 TIGR01205 D_ala_D_alaTIGR D-al 99.9 5.7E-24 1.2E-28 259.7 27.2 238 130-391 62-312 (315)
72 PLN03229 acetyl-coenzyme A car 99.9 6.9E-25 1.5E-29 277.3 18.5 203 1877-2152 167-379 (762)
73 PRK14568 vanB D-alanine--D-lac 99.9 5.2E-24 1.1E-28 263.3 26.0 230 130-389 89-335 (343)
74 PRK14572 D-alanyl-alanine synt 99.9 1.5E-23 3.2E-28 259.6 29.2 238 130-390 87-341 (347)
75 PF02785 Biotin_carb_C: Biotin 99.9 1.9E-25 4E-30 229.8 8.4 107 443-550 1-107 (107)
76 PRK14570 D-alanyl-alanine synt 99.9 1.5E-23 3.3E-28 260.1 26.9 240 130-390 86-342 (364)
77 smart00878 Biotin_carb_C Bioti 99.9 8E-25 1.7E-29 225.5 8.5 107 443-550 1-107 (107)
78 PRK05654 acetyl-CoA carboxylas 99.9 4.3E-23 9.3E-28 246.2 20.7 197 1853-2149 47-279 (292)
79 PRK14571 D-alanyl-alanine synt 99.9 6.9E-22 1.5E-26 240.1 29.4 222 130-387 52-288 (299)
80 PRK14573 bifunctional D-alanyl 99.9 5.8E-22 1.2E-26 269.6 30.4 240 130-390 525-782 (809)
81 KOG0370 Multifunctional pyrimi 99.9 1.4E-22 3.1E-27 253.5 21.8 321 48-422 918-1272(1435)
82 TIGR00515 accD acetyl-CoA carb 99.9 1.4E-22 3E-27 240.9 20.5 199 1853-2149 46-278 (285)
83 COG0825 AccA Acetyl-CoA carbox 99.9 2.2E-23 4.8E-28 238.7 11.5 160 1876-2057 74-237 (317)
84 COG2232 Predicted ATP-dependen 99.9 7.1E-21 1.5E-25 220.7 25.3 348 48-516 11-371 (389)
85 PF13535 ATP-grasp_4: ATP-gras 99.9 5E-21 1.1E-25 214.6 17.7 178 169-372 1-183 (184)
86 KOG0370 Multifunctional pyrimi 99.9 8.1E-22 1.8E-26 246.9 11.4 305 48-400 377-703 (1435)
87 TIGR00768 rimK_fam alpha-L-glu 99.9 4.9E-20 1.1E-24 220.4 25.7 226 131-390 48-276 (277)
88 KOG0237 Glycinamide ribonucleo 99.8 6.2E-19 1.3E-23 214.6 31.4 351 118-548 55-436 (788)
89 PRK14016 cyanophycin synthetas 99.8 9.9E-21 2.2E-25 253.0 15.1 312 8-390 87-470 (727)
90 PF00289 CPSase_L_chain: Carba 99.8 5.9E-21 1.3E-25 198.4 9.8 110 47-167 1-110 (110)
91 PRK10446 ribosomal protein S6 99.8 2.8E-19 6.1E-24 217.6 24.2 225 131-393 57-288 (300)
92 TIGR02144 LysX_arch Lysine bio 99.8 5.5E-19 1.2E-23 212.4 23.4 226 131-392 47-276 (280)
93 PRK13278 purP 5-formaminoimida 99.8 2.1E-18 4.6E-23 212.2 28.4 279 35-370 7-314 (358)
94 CHL00174 accD acetyl-CoA carbo 99.8 7.9E-19 1.7E-23 207.7 19.8 197 1852-2148 57-291 (296)
95 TIGR03103 trio_acet_GNAT GNAT- 99.8 9.3E-19 2E-23 227.6 19.8 283 33-371 178-525 (547)
96 PRK13277 5-formaminoimidazole- 99.8 1E-17 2.2E-22 203.0 27.1 308 35-404 6-354 (366)
97 COG0777 AccD Acetyl-CoA carbox 99.8 1.7E-18 3.7E-23 197.9 17.8 197 1852-2148 47-279 (294)
98 PF02222 ATP-grasp: ATP-grasp 99.8 2.5E-18 5.4E-23 192.2 18.3 166 180-375 1-168 (172)
99 PRK05641 putative acetyl-CoA c 99.8 5.4E-18 1.2E-22 185.2 16.5 70 685-754 82-152 (153)
100 PF07478 Dala_Dala_lig_C: D-al 99.7 2.2E-17 4.7E-22 190.1 17.8 186 179-390 1-201 (203)
101 COG1181 DdlA D-alanine-D-alani 99.7 5.3E-16 1.1E-20 188.8 26.9 236 130-389 60-311 (317)
102 COG0511 AccB Biotin carboxyl c 99.7 1.5E-16 3.2E-21 172.6 8.6 71 686-756 69-140 (140)
103 PF02655 ATP-grasp_3: ATP-gras 99.7 1.6E-16 3.4E-21 176.8 8.6 158 170-371 1-161 (161)
104 PF01071 GARS_A: Phosphoribosy 99.7 2.9E-15 6.3E-20 169.4 18.8 167 171-369 1-190 (194)
105 CHL00198 accA acetyl-CoA carbo 99.6 5.2E-16 1.1E-20 185.9 12.6 194 1514-1815 62-269 (322)
106 PLN03229 acetyl-coenzyme A car 99.6 5.8E-16 1.3E-20 197.3 13.5 195 1514-1815 150-357 (762)
107 COG3919 Predicted ATP-grasp en 99.6 1.5E-15 3.3E-20 173.7 15.4 297 50-395 5-314 (415)
108 COG0189 RimK Glutathione synth 99.6 1.7E-14 3.7E-19 176.1 21.0 227 130-391 77-311 (318)
109 PLN02820 3-methylcrotonyl-CoA 99.6 4.4E-15 9.6E-20 191.6 16.0 151 1858-2046 80-244 (569)
110 PRK12319 acetyl-CoA carboxylas 99.6 1.4E-14 3E-19 170.9 18.7 194 1514-1815 6-213 (256)
111 TIGR03133 malonate_beta malona 99.6 6.1E-15 1.3E-19 174.6 15.7 145 1860-2049 6-179 (274)
112 TIGR00513 accA acetyl-CoA carb 99.6 1.2E-14 2.5E-19 174.5 17.8 195 1514-1815 59-266 (316)
113 PRK07189 malonate decarboxylas 99.6 5.8E-15 1.3E-19 176.3 14.9 146 1859-2049 14-188 (301)
114 PRK05724 acetyl-CoA carboxylas 99.6 6.4E-15 1.4E-19 177.0 13.6 194 1514-1815 59-266 (319)
115 PLN03230 acetyl-coenzyme A car 99.6 2.6E-14 5.7E-19 174.1 17.8 195 1514-1815 129-336 (431)
116 PRK06549 acetyl-CoA carboxylas 99.6 1.4E-14 3E-19 154.2 13.0 124 628-754 4-129 (130)
117 TIGR02068 cya_phycin_syn cyano 99.6 2.9E-14 6.3E-19 194.7 18.6 310 8-392 86-471 (864)
118 PF08443 RimK: RimK-like ATP-g 99.6 2.7E-14 5.9E-19 163.1 14.2 184 171-390 2-189 (190)
119 PRK05889 putative acetyl-CoA c 99.5 2.8E-14 6E-19 137.7 8.9 68 688-755 3-71 (71)
120 PRK14042 pyruvate carboxylase 99.5 6.1E-14 1.3E-18 181.8 14.9 124 628-755 465-594 (596)
121 PRK09282 pyruvate carboxylase 99.5 2.4E-13 5.2E-18 177.6 15.1 122 607-756 467-592 (592)
122 PRK08225 acetyl-CoA carboxylas 99.4 2.1E-13 4.6E-18 131.2 8.7 68 688-755 2-70 (70)
123 PF00364 Biotin_lipoyl: Biotin 99.4 1.8E-13 4E-18 133.1 7.0 66 689-754 2-74 (74)
124 PRK06748 hypothetical protein; 99.4 4.2E-13 9.1E-18 132.1 9.2 69 689-757 6-76 (83)
125 TIGR01117 mmdA methylmalonyl-C 99.4 1.1E-12 2.5E-17 169.1 15.5 147 1858-2048 29-195 (512)
126 PRK12458 glutathione synthetas 99.4 8.1E-12 1.7E-16 154.7 21.5 200 153-392 111-322 (338)
127 TIGR01435 glu_cys_lig_rel glut 99.4 8.7E-12 1.9E-16 164.7 19.7 248 104-389 408-734 (737)
128 PF01039 Carboxyl_trans: Carbo 99.4 1.9E-12 4.1E-17 167.4 12.1 147 1860-2049 8-173 (493)
129 PRK02471 bifunctional glutamat 99.3 1.3E-11 2.8E-16 165.6 19.4 249 104-389 420-748 (752)
130 TIGR01108 oadA oxaloacetate de 99.3 1.8E-12 3.9E-17 169.0 10.6 111 625-751 471-582 (582)
131 COG1821 Predicted ATP-utilizin 99.3 7.8E-12 1.7E-16 142.1 13.7 190 148-394 91-282 (307)
132 PRK14040 oxaloacetate decarbox 99.3 4.9E-12 1.1E-16 165.2 12.2 117 625-755 476-593 (593)
133 COG4799 Acetyl-CoA carboxylase 99.3 5.6E-12 1.2E-16 158.8 9.9 149 1858-2048 41-204 (526)
134 TIGR01380 glut_syn glutathione 99.3 8.7E-11 1.9E-15 144.3 20.0 275 59-391 19-308 (312)
135 PRK07051 hypothetical protein; 99.3 7.3E-12 1.6E-16 123.8 8.4 68 688-755 4-79 (80)
136 COG0825 AccA Acetyl-CoA carbox 99.3 4.1E-12 8.8E-17 147.2 6.2 178 1505-1789 50-235 (317)
137 TIGR00531 BCCP acetyl-CoA carb 99.2 1.3E-11 2.8E-16 136.4 8.7 69 687-755 80-156 (156)
138 PRK05246 glutathione synthetas 99.2 2.5E-10 5.5E-15 140.5 19.5 274 59-392 20-310 (316)
139 PLN02941 inositol-tetrakisphos 99.2 2.2E-10 4.7E-15 140.2 17.9 176 155-369 91-305 (328)
140 PLN02983 biotin carboxyl carri 99.2 1.9E-11 4.2E-16 141.2 8.2 69 688-756 198-274 (274)
141 PRK06302 acetyl-CoA carboxylas 99.1 8.1E-11 1.8E-15 130.2 8.6 69 687-755 79-155 (155)
142 cd06850 biotinyl_domain The bi 99.1 1.7E-10 3.6E-15 109.1 8.1 66 689-754 1-67 (67)
143 TIGR02291 rimK_rel_E_lig alpha 99.1 1.8E-09 3.8E-14 131.5 18.0 199 161-387 26-288 (317)
144 TIGR02712 urea_carbox urea car 99.0 4.5E-10 9.9E-15 157.4 9.2 69 687-755 1132-1201(1201)
145 PLN02226 2-oxoglutarate dehydr 98.9 1.3E-09 2.8E-14 137.7 8.3 67 692-758 102-169 (463)
146 PRK14875 acetoin dehydrogenase 98.9 2.1E-09 4.5E-14 134.1 8.7 65 694-758 15-80 (371)
147 cd06663 Biotinyl_lipoyl_domain 98.9 3.8E-09 8.2E-14 102.4 8.0 60 695-754 13-73 (73)
148 PTZ00144 dihydrolipoamide succ 98.9 2.4E-09 5.2E-14 134.6 8.4 65 694-758 57-122 (418)
149 PRK05704 dihydrolipoamide succ 98.8 1.2E-08 2.7E-13 128.9 12.0 66 693-758 14-80 (407)
150 COG1759 5-formaminoimidazole-4 98.8 6.5E-07 1.4E-11 105.9 25.0 281 34-372 6-319 (361)
151 KOG0540 3-Methylcrotonyl-CoA c 98.8 1.1E-08 2.4E-13 124.0 9.8 128 1583-1782 334-466 (536)
152 PF06833 MdcE: Malonate decarb 98.7 1.3E-07 2.8E-12 109.4 15.5 197 1876-2153 2-207 (234)
153 TIGR01016 sucCoAbeta succinyl- 98.7 1.6E-07 3.5E-12 119.0 17.3 98 172-292 4-117 (386)
154 TIGR01347 sucB 2-oxoglutarate 98.7 6.9E-08 1.5E-12 122.0 12.1 65 694-758 13-78 (403)
155 COG0508 AceF Pyruvate/2-oxoglu 98.7 4.5E-08 9.6E-13 123.9 9.9 65 695-759 16-81 (404)
156 PRK00696 sucC succinyl-CoA syn 98.7 3.3E-07 7.1E-12 116.4 17.4 105 172-299 4-125 (388)
157 TIGR03134 malonate_gamma malon 98.7 1.8E-07 3.9E-12 110.2 13.4 172 1588-1829 21-204 (238)
158 PF14397 ATPgrasp_ST: Sugar-tr 98.6 1E-06 2.2E-11 107.3 18.2 192 162-369 16-259 (285)
159 PRK11854 aceF pyruvate dehydro 98.6 8.3E-08 1.8E-12 128.1 8.4 65 694-758 13-78 (633)
160 PRK11854 aceF pyruvate dehydro 98.6 8.3E-08 1.8E-12 128.1 8.3 66 693-758 216-282 (633)
161 PLN02528 2-oxoisovalerate dehy 98.5 2.5E-07 5.5E-12 117.6 8.8 64 695-758 12-76 (416)
162 TIGR01348 PDHac_trf_long pyruv 98.5 2.3E-07 4.9E-12 121.8 7.9 65 694-758 128-193 (546)
163 TIGR02927 SucB_Actino 2-oxoglu 98.4 3E-07 6.6E-12 121.6 8.4 67 692-758 146-213 (590)
164 TIGR01348 PDHac_trf_long pyruv 98.4 4.5E-07 9.7E-12 119.1 8.8 68 692-759 10-78 (546)
165 PF14398 ATPgrasp_YheCD: YheC/ 98.3 6.4E-06 1.4E-10 99.3 16.0 180 153-370 5-235 (262)
166 PRK11855 dihydrolipoamide acet 98.3 7.9E-07 1.7E-11 117.3 8.3 64 694-757 131-195 (547)
167 cd06849 lipoyl_domain Lipoyl d 98.3 2.1E-06 4.5E-11 81.1 7.9 65 690-754 9-74 (74)
168 PRK11855 dihydrolipoamide acet 98.2 2.3E-06 5.1E-11 112.9 8.2 65 694-758 14-79 (547)
169 PRK11856 branched-chain alpha- 98.2 3.5E-06 7.6E-11 107.8 8.5 66 693-758 14-80 (411)
170 TIGR01349 PDHac_trf_mito pyruv 98.1 3.4E-06 7.4E-11 108.1 8.0 65 693-757 11-77 (435)
171 KOG0559 Dihydrolipoamide succi 98.1 2.1E-06 4.6E-11 102.0 4.7 62 695-756 86-148 (457)
172 PRK11892 pyruvate dehydrogenas 98.1 4.7E-06 1E-10 107.3 8.1 65 694-758 15-81 (464)
173 PLN02744 dihydrolipoyllysine-r 98.1 7E-06 1.5E-10 106.6 8.1 63 694-756 125-189 (539)
174 TIGR02927 SucB_Actino 2-oxoglu 98.0 1.1E-05 2.3E-10 107.1 7.6 66 692-757 13-79 (590)
175 PRK05641 putative acetyl-CoA c 97.8 0.00018 3.8E-09 80.0 13.3 109 607-718 3-152 (153)
176 PRK14046 malate--CoA ligase su 97.8 0.00028 6E-09 89.9 16.7 104 173-299 5-125 (392)
177 PF13549 ATP-grasp_5: ATP-gras 97.8 6.4E-05 1.4E-09 88.5 9.3 106 172-300 11-131 (222)
178 KOG0557 Dihydrolipoamide acety 97.7 5.3E-05 1.2E-09 94.2 6.9 64 695-758 52-117 (470)
179 PRK13380 glycine cleavage syst 97.7 3.8E-05 8.3E-10 84.4 5.0 51 688-738 36-87 (144)
180 PF08442 ATP-grasp_2: ATP-gras 97.7 0.00024 5.1E-09 82.6 11.6 100 173-295 4-119 (202)
181 PLN00124 succinyl-CoA ligase [ 97.7 0.00054 1.2E-08 87.5 15.8 101 172-296 31-158 (422)
182 PF03255 ACCA: Acetyl co-enzym 97.6 5.3E-05 1.1E-09 81.8 5.0 70 1876-1960 72-145 (145)
183 PRK08184 benzoyl-CoA-dihydrodi 97.6 0.013 2.9E-07 77.6 27.0 235 1742-2024 123-393 (550)
184 cd07020 Clp_protease_NfeD_1 No 97.6 0.0007 1.5E-08 78.0 13.2 91 1941-2047 7-100 (187)
185 TIGR03222 benzo_boxC benzoyl-C 97.6 0.01 2.2E-07 78.5 25.2 102 1935-2044 286-410 (546)
186 PLN02235 ATP citrate (pro-S)-l 97.4 0.0017 3.8E-08 82.2 15.4 101 174-296 9-130 (423)
187 cd07015 Clp_protease_NfeD Nodu 97.4 0.0026 5.5E-08 72.3 14.6 91 1942-2048 8-101 (172)
188 cd06848 GCS_H Glycine cleavage 97.4 0.00026 5.6E-09 72.9 5.8 52 690-741 23-76 (96)
189 TIGR00998 8a0101 efflux pump m 97.4 0.00037 8E-09 86.9 8.2 34 687-720 42-75 (334)
190 PRK01202 glycine cleavage syst 97.3 0.00067 1.5E-08 73.4 8.6 71 689-759 30-109 (127)
191 PRK09783 copper/silver efflux 97.3 0.00059 1.3E-08 87.6 9.3 73 687-759 123-245 (409)
192 TIGR03077 not_gcvH glycine cle 97.3 0.00042 9.1E-09 73.0 6.0 47 692-738 26-73 (110)
193 cd07021 Clp_protease_NfeD_like 97.3 0.0021 4.7E-08 73.5 12.1 90 1941-2047 7-97 (178)
194 PRK10476 multidrug resistance 97.2 0.00053 1.1E-08 86.2 7.6 34 687-720 48-81 (346)
195 COG0045 SucC Succinyl-CoA synt 97.2 0.0024 5.2E-08 79.0 12.5 102 174-298 6-121 (387)
196 TIGR03309 matur_yqeB selenium- 97.2 0.0017 3.6E-08 76.9 10.5 90 687-796 164-253 (256)
197 PF02955 GSH-S_ATP: Prokaryoti 97.2 0.00075 1.6E-08 76.6 7.4 64 216-281 18-82 (173)
198 TIGR01730 RND_mfp RND family e 97.2 0.00093 2E-08 82.4 8.9 72 687-758 26-169 (322)
199 PF03255 ACCA: Acetyl co-enzym 97.1 0.0011 2.4E-08 71.9 7.7 82 1514-1637 56-145 (145)
200 PF14305 ATPgrasp_TupA: TupA-l 97.1 0.0076 1.7E-07 72.1 15.3 175 166-371 14-221 (239)
201 PRK10559 p-hydroxybenzoic acid 97.1 0.00096 2.1E-08 82.7 7.8 69 690-758 50-189 (310)
202 KOG0558 Dihydrolipoamide trans 97.0 0.00058 1.3E-08 81.4 4.6 62 697-758 80-142 (474)
203 PRK03598 putative efflux pump 97.0 0.0014 3E-08 81.9 7.9 33 688-720 44-76 (331)
204 PF13533 Biotin_lipoyl_2: Biot 97.0 0.00078 1.7E-08 61.2 3.9 37 688-724 3-39 (50)
205 PF05770 Ins134_P3_kin: Inosit 96.9 0.0027 5.8E-08 78.0 9.3 178 156-369 78-290 (307)
206 PRK15136 multidrug efflux syst 96.9 0.0019 4E-08 82.7 8.1 33 688-720 62-94 (390)
207 PRK00624 glycine cleavage syst 96.9 0.0015 3.3E-08 69.2 6.0 70 691-760 27-105 (114)
208 PRK00277 clpP ATP-dependent Cl 96.9 0.018 3.9E-07 67.3 15.3 94 1940-2049 36-132 (200)
209 cd07016 S14_ClpP_1 Caseinolyti 96.9 0.012 2.6E-07 66.1 13.3 89 1942-2049 7-99 (160)
210 cd00394 Clp_protease_like Case 96.8 0.013 2.9E-07 65.5 13.2 91 1941-2048 5-97 (161)
211 PRK14512 ATP-dependent Clp pro 96.8 0.013 2.8E-07 68.3 13.2 109 1924-2049 13-124 (197)
212 COG1030 NfeD Membrane-bound se 96.8 0.012 2.6E-07 74.3 13.7 90 1941-2046 34-126 (436)
213 TIGR00527 gcvH glycine cleavag 96.8 0.0015 3.4E-08 70.6 5.2 49 690-738 30-79 (127)
214 PRK15030 multidrug efflux syst 96.7 0.0048 1E-07 79.1 9.6 73 687-759 65-211 (397)
215 PRK09578 periplasmic multidrug 96.6 0.0034 7.3E-08 80.2 7.7 72 688-759 64-209 (385)
216 PRK12551 ATP-dependent Clp pro 96.6 0.027 5.8E-07 65.5 13.5 95 1939-2049 29-126 (196)
217 PRK12553 ATP-dependent Clp pro 96.4 0.021 4.5E-07 67.1 11.9 91 1941-2047 41-134 (207)
218 PRK11578 macrolide transporter 96.4 0.0056 1.2E-07 77.8 7.7 33 688-720 62-94 (370)
219 PRK12784 hypothetical protein; 96.4 0.0096 2.1E-07 57.6 7.0 69 689-757 7-77 (84)
220 TIGR00493 clpP ATP-dependent C 96.4 0.059 1.3E-06 62.6 15.0 96 1937-2048 28-126 (191)
221 PRK11556 multidrug efflux syst 96.4 0.0058 1.3E-07 78.8 7.4 73 687-759 87-233 (415)
222 PRK09859 multidrug efflux syst 96.3 0.0059 1.3E-07 78.0 7.2 72 688-759 62-207 (385)
223 PF02750 Synapsin_C: Synapsin, 96.3 0.047 1E-06 62.4 13.2 124 227-366 47-176 (203)
224 cd07013 S14_ClpP Caseinolytic 96.2 0.054 1.2E-06 61.3 12.8 93 1941-2049 6-101 (162)
225 PF00574 CLP_protease: Clp pro 96.2 0.025 5.4E-07 64.9 10.3 157 1941-2136 22-181 (182)
226 PRK14514 ATP-dependent Clp pro 96.1 0.059 1.3E-06 63.7 13.3 93 1941-2049 60-155 (221)
227 TIGR00706 SppA_dom signal pept 96.0 0.13 2.9E-06 60.3 15.8 87 1942-2047 9-100 (207)
228 CHL00028 clpP ATP-dependent Cl 96.0 0.11 2.3E-06 60.8 14.8 94 1940-2049 35-131 (200)
229 cd07017 S14_ClpP_2 Caseinolyti 96.0 0.057 1.2E-06 61.6 12.1 94 1940-2049 14-110 (171)
230 PRK14042 pyruvate carboxylase 96.0 0.033 7.2E-07 74.2 11.4 111 607-720 465-595 (596)
231 PRK14513 ATP-dependent Clp pro 95.9 0.11 2.4E-06 60.6 13.9 94 1940-2049 32-128 (201)
232 PF02844 GARS_N: Phosphoribosy 95.8 0.043 9.4E-07 57.0 8.9 98 50-169 2-99 (100)
233 PF12700 HlyD_2: HlyD family s 95.6 0.01 2.2E-07 73.6 4.5 33 687-720 21-53 (328)
234 cd07018 S49_SppA_67K_type Sign 95.6 0.25 5.4E-06 58.7 15.7 90 1943-2047 25-116 (222)
235 cd07020 Clp_protease_NfeD_1 No 95.5 0.029 6.3E-07 64.8 7.4 38 1743-1780 59-99 (187)
236 KOG0368 Acetyl-CoA carboxylase 95.5 3.7 7.9E-05 58.3 27.1 108 629-755 606-717 (2196)
237 PF13533 Biotin_lipoyl_2: Biot 95.5 0.014 3E-07 53.2 3.7 34 725-758 3-37 (50)
238 cd07014 S49_SppA Signal peptid 95.5 0.18 3.8E-06 57.8 13.5 87 1946-2047 21-110 (177)
239 TIGR01843 type_I_hlyD type I s 95.4 0.035 7.5E-07 71.4 8.5 35 686-720 42-76 (423)
240 TIGR02971 heterocyst_DevB ABC 95.4 0.033 7.1E-07 69.6 7.8 33 688-720 14-49 (327)
241 PRK08225 acetyl-CoA carboxylas 95.3 0.033 7.2E-07 54.0 6.0 34 686-719 37-70 (70)
242 cd07019 S49_SppA_1 Signal pept 95.1 0.18 3.9E-06 59.5 12.5 85 1948-2047 22-109 (211)
243 PF03133 TTL: Tubulin-tyrosine 95.0 0.099 2.2E-06 64.4 10.2 44 232-280 67-110 (292)
244 cd07022 S49_Sppa_36K_type Sign 94.9 0.28 6.1E-06 57.9 13.2 89 1942-2046 20-111 (214)
245 cd07023 S49_Sppa_N_C Signal pe 94.7 0.51 1.1E-05 55.4 14.8 91 1942-2047 9-105 (208)
246 PRK07051 hypothetical protein; 94.7 0.038 8.1E-07 55.3 4.6 36 684-719 44-79 (80)
247 PF01597 GCV_H: Glycine cleava 94.5 0.056 1.2E-06 58.4 5.5 65 696-761 31-105 (122)
248 PRK05889 putative acetyl-CoA c 94.4 0.072 1.6E-06 51.9 5.6 34 686-719 38-71 (71)
249 COG0740 ClpP Protease subunit 94.3 0.68 1.5E-05 53.9 14.0 159 1941-2138 33-194 (200)
250 PF11379 DUF3182: Protein of u 94.3 0.32 6.9E-06 59.9 11.7 165 104-308 47-214 (355)
251 PRK06549 acetyl-CoA carboxylas 94.3 0.15 3.2E-06 55.7 8.1 109 607-718 4-129 (130)
252 PRK12552 ATP-dependent Clp pro 94.2 0.36 7.8E-06 57.2 11.8 92 1948-2049 53-150 (222)
253 PF13375 RnfC_N: RnfC Barrel s 94.1 0.1 2.2E-06 54.6 6.2 39 699-738 42-80 (101)
254 cd06252 M14_ASTE_ASPA_like_2 A 93.9 0.16 3.6E-06 63.4 8.8 67 688-756 245-315 (316)
255 cd07021 Clp_protease_NfeD_like 93.9 0.12 2.5E-06 59.5 6.8 38 1743-1780 59-96 (178)
256 PF01972 SDH_sah: Serine dehyd 93.8 0.19 4.1E-06 60.5 8.4 88 1942-2047 70-157 (285)
257 cd06558 crotonase-like Crotona 93.8 0.92 2E-05 52.2 14.1 97 1942-2045 21-130 (195)
258 PRK12999 pyruvate carboxylase; 93.7 0.31 6.7E-06 70.2 11.8 103 650-756 1043-1146(1146)
259 PRK14040 oxaloacetate decarbox 93.7 0.18 3.9E-06 67.8 8.9 110 605-718 477-592 (593)
260 COG0511 AccB Biotin carboxyl c 93.5 0.11 2.3E-06 57.6 5.5 33 687-719 107-139 (140)
261 COG3608 Predicted deacylase [G 93.5 0.16 3.5E-06 62.9 7.5 66 688-755 257-325 (331)
262 COG0509 GcvH Glycine cleavage 93.4 0.094 2E-06 56.7 4.7 49 690-738 33-82 (131)
263 TIGR02994 ectoine_eutE ectoine 93.0 0.26 5.5E-06 61.9 8.3 65 688-754 256-324 (325)
264 cd06253 M14_ASTE_ASPA_like_3 A 93.0 0.24 5.3E-06 61.4 8.1 66 687-754 229-297 (298)
265 cd06251 M14_ASTE_ASPA_like_1 A 92.9 0.25 5.4E-06 61.0 8.1 65 688-754 220-286 (287)
266 PF00378 ECH: Enoyl-CoA hydrat 92.4 1.4 3E-05 53.0 13.3 95 1941-2043 19-125 (245)
267 KOG0840 ATP-dependent Clp prot 92.3 0.92 2E-05 53.9 10.9 95 1940-2050 97-194 (275)
268 PRK07110 polyketide biosynthes 92.3 0.22 4.8E-06 60.1 6.4 88 1742-1831 94-196 (249)
269 TIGR01235 pyruv_carbox pyruvat 92.3 0.6 1.3E-05 67.1 11.5 125 627-755 1011-1143(1143)
270 KOG3895 Synaptic vesicle prote 92.3 0.33 7.2E-06 59.1 7.5 210 128-375 152-377 (488)
271 PRK06213 enoyl-CoA hydratase; 92.2 1.9 4.2E-05 51.4 14.1 93 1942-2043 24-127 (229)
272 PRK06142 enoyl-CoA hydratase; 92.1 0.23 4.9E-06 60.8 6.2 86 1742-1828 109-209 (272)
273 COG0616 SppA Periplasmic serin 92.0 0.85 1.8E-05 57.2 11.1 174 1943-2139 79-265 (317)
274 PRK06748 hypothetical protein; 91.9 0.24 5.3E-06 50.0 5.0 34 687-720 42-75 (83)
275 PRK06495 enoyl-CoA hydratase; 91.9 0.21 4.5E-06 60.6 5.4 86 1742-1829 97-194 (257)
276 cd06254 M14_ASTE_ASPA_like_4 A 91.7 0.31 6.6E-06 60.2 6.8 64 686-751 222-287 (288)
277 PRK05674 gamma-carboxygeranoyl 91.7 0.23 4.9E-06 60.6 5.6 88 1742-1831 101-202 (265)
278 PRK06563 enoyl-CoA hydratase; 91.6 0.24 5.3E-06 59.9 5.7 85 1742-1828 92-191 (255)
279 PRK07112 polyketide biosynthes 91.6 0.29 6.3E-06 59.4 6.3 90 1742-1832 96-199 (255)
280 PRK05869 enoyl-CoA hydratase; 91.6 0.26 5.6E-06 58.6 5.7 86 1742-1829 99-199 (222)
281 PRK07260 enoyl-CoA hydratase; 90.8 0.28 6.2E-06 59.4 5.2 85 1742-1828 98-197 (255)
282 PRK07511 enoyl-CoA hydratase; 90.8 0.37 8E-06 58.5 6.1 85 1742-1828 98-197 (260)
283 PRK05809 3-hydroxybutyryl-CoA 90.8 5 0.00011 48.9 15.8 94 1942-2043 26-132 (260)
284 cd06250 M14_PaAOTO_like An unc 90.8 0.62 1.4E-05 59.3 8.3 66 687-754 289-358 (359)
285 PF13437 HlyD_3: HlyD family s 90.7 0.28 6E-06 51.0 4.3 33 689-721 1-33 (105)
286 PRK05981 enoyl-CoA hydratase; 90.6 0.34 7.4E-06 59.0 5.6 86 1742-1829 103-203 (266)
287 cd06558 crotonase-like Crotona 90.4 0.33 7.2E-06 55.8 5.1 86 1742-1829 93-193 (195)
288 PF00378 ECH: Enoyl-CoA hydrat 90.4 0.24 5.3E-06 59.4 4.1 84 1742-1827 90-188 (245)
289 PRK06127 enoyl-CoA hydratase; 90.4 0.36 7.9E-06 59.0 5.6 88 1742-1831 106-208 (269)
290 PRK11423 methylmalonyl-CoA dec 90.3 3.5 7.6E-05 50.3 13.9 94 1942-2043 26-131 (261)
291 PF00364 Biotin_lipoyl: Biotin 90.2 0.19 4.2E-06 49.5 2.4 36 683-718 39-74 (74)
292 PLN02267 enoyl-CoA hydratase/i 90.1 0.43 9.3E-06 57.4 5.8 89 1742-1831 94-199 (239)
293 PLN03214 probable enoyl-CoA hy 90.0 14 0.00029 45.8 18.6 95 1942-2043 33-142 (278)
294 PRK08150 enoyl-CoA hydratase; 89.9 4.6 0.0001 49.1 14.4 93 1942-2043 24-127 (255)
295 PLN02664 enoyl-CoA hydratase/d 89.8 15 0.00032 45.3 18.8 94 1942-2043 30-146 (275)
296 TIGR02280 PaaB1 phenylacetate 89.7 4.3 9.3E-05 49.4 13.9 94 1942-2043 21-128 (256)
297 PRK08140 enoyl-CoA hydratase; 89.7 0.43 9.3E-06 58.0 5.4 88 1742-1831 99-201 (262)
298 PRK03580 carnitinyl-CoA dehydr 89.7 4.5 9.8E-05 49.3 14.1 94 1942-2043 24-129 (261)
299 PF14403 CP_ATPgrasp_2: Circul 89.6 1.4 3.1E-05 57.2 10.1 194 37-280 174-386 (445)
300 TIGR03189 dienoyl_CoA_hyt cycl 89.6 0.48 1E-05 57.4 5.7 77 1742-1819 89-179 (251)
301 TIGR02280 PaaB1 phenylacetate 89.6 0.47 1E-05 57.6 5.6 86 1742-1829 93-193 (256)
302 PRK09674 enoyl-CoA hydratase-i 89.5 0.49 1.1E-05 57.4 5.7 85 1742-1828 92-191 (255)
303 PLN02921 naphthoate synthase 89.5 0.55 1.2E-05 59.0 6.3 86 1742-1829 161-261 (327)
304 PRK08138 enoyl-CoA hydratase; 89.5 0.49 1.1E-05 57.6 5.7 85 1742-1828 98-197 (261)
305 PRK09120 p-hydroxycinnamoyl Co 89.5 0.47 1E-05 58.2 5.6 85 1742-1828 104-203 (275)
306 PLN02664 enoyl-CoA hydratase/d 89.5 0.5 1.1E-05 57.9 5.8 74 1742-1816 111-199 (275)
307 PRK08321 naphthoate synthase; 89.5 0.55 1.2E-05 58.4 6.2 86 1742-1829 135-236 (302)
308 TIGR01929 menB naphthoate synt 89.4 0.41 8.9E-06 58.2 5.0 85 1742-1828 97-196 (259)
309 PF06973 DUF1297: Domain of un 89.3 3.6 7.8E-05 47.2 11.7 96 269-371 21-145 (188)
310 PRK09282 pyruvate carboxylase 89.2 0.79 1.7E-05 61.9 7.8 103 605-719 489-591 (592)
311 PRK07799 enoyl-CoA hydratase; 89.2 0.52 1.1E-05 57.4 5.6 86 1742-1829 100-200 (263)
312 PRK06494 enoyl-CoA hydratase; 89.1 0.57 1.2E-05 57.0 5.8 87 1742-1830 94-195 (259)
313 PRK09245 enoyl-CoA hydratase; 88.9 0.5 1.1E-05 57.6 5.3 85 1742-1828 103-202 (266)
314 PLN02600 enoyl-CoA hydratase 88.9 0.62 1.4E-05 56.4 6.0 84 1742-1827 88-186 (251)
315 PRK06023 enoyl-CoA hydratase; 88.9 0.55 1.2E-05 56.8 5.5 85 1742-1828 97-196 (251)
316 PRK06210 enoyl-CoA hydratase; 88.8 0.48 1E-05 57.9 5.0 85 1742-1828 108-207 (272)
317 PRK06127 enoyl-CoA hydratase; 88.7 5.6 0.00012 48.8 14.0 94 1942-2043 33-141 (269)
318 PRK08140 enoyl-CoA hydratase; 88.7 6.4 0.00014 48.0 14.5 94 1942-2043 26-134 (262)
319 PLN02600 enoyl-CoA hydratase 88.7 7.1 0.00015 47.4 14.8 94 1942-2043 17-123 (251)
320 PRK07509 enoyl-CoA hydratase; 88.6 0.4 8.7E-06 58.3 4.1 87 1742-1829 102-203 (262)
321 PRK09076 enoyl-CoA hydratase; 88.5 0.62 1.4E-05 56.6 5.7 84 1742-1827 95-193 (258)
322 PRK06144 enoyl-CoA hydratase; 88.4 5.6 0.00012 48.6 13.7 97 1942-2045 30-139 (262)
323 PRK08788 enoyl-CoA hydratase; 88.4 15 0.00033 45.6 17.5 94 1942-2043 38-156 (287)
324 PRK06302 acetyl-CoA carboxylas 88.3 0.55 1.2E-05 53.0 4.6 41 679-719 115-155 (155)
325 cd07015 Clp_protease_NfeD Nodu 88.3 0.92 2E-05 52.0 6.4 89 1619-1781 8-100 (172)
326 cd00210 PTS_IIA_glc PTS_IIA, P 88.2 0.75 1.6E-05 50.0 5.4 63 687-757 35-104 (124)
327 PRK07260 enoyl-CoA hydratase; 88.2 6.1 0.00013 48.0 13.8 94 1942-2043 24-133 (255)
328 PRK08150 enoyl-CoA hydratase; 88.2 0.74 1.6E-05 55.9 6.0 87 1742-1830 92-193 (255)
329 PRK08258 enoyl-CoA hydratase; 88.2 0.66 1.4E-05 57.0 5.6 87 1742-1830 113-215 (277)
330 PRK06688 enoyl-CoA hydratase; 88.2 0.51 1.1E-05 57.2 4.6 88 1742-1831 96-198 (259)
331 cd06850 biotinyl_domain The bi 88.2 0.76 1.6E-05 43.3 4.8 31 688-718 37-67 (67)
332 PLN02888 enoyl-CoA hydratase 88.1 0.51 1.1E-05 57.6 4.6 87 1742-1830 99-200 (265)
333 PRK06190 enoyl-CoA hydratase; 88.1 0.58 1.3E-05 57.0 5.0 86 1742-1829 94-194 (258)
334 PF13380 CoA_binding_2: CoA bi 88.0 0.98 2.1E-05 48.5 6.1 106 49-166 1-112 (116)
335 PRK05862 enoyl-CoA hydratase; 88.0 0.51 1.1E-05 57.3 4.4 85 1742-1828 94-193 (257)
336 PRK08139 enoyl-CoA hydratase; 87.9 0.95 2.1E-05 55.3 6.7 85 1742-1828 104-202 (266)
337 PRK06144 enoyl-CoA hydratase; 87.8 0.82 1.8E-05 55.7 6.1 85 1742-1828 102-202 (262)
338 PRK08259 enoyl-CoA hydratase; 87.8 0.58 1.3E-05 56.7 4.8 85 1742-1828 93-192 (254)
339 PRK07327 enoyl-CoA hydratase; 87.8 0.91 2E-05 55.5 6.5 86 1742-1829 106-206 (268)
340 PRK09076 enoyl-CoA hydratase; 87.7 6.3 0.00014 48.0 13.6 94 1942-2043 24-130 (258)
341 PRK07827 enoyl-CoA hydratase; 87.7 0.54 1.2E-05 57.2 4.4 90 1742-1832 101-204 (260)
342 PRK07657 enoyl-CoA hydratase; 87.6 0.77 1.7E-05 55.8 5.6 86 1742-1829 97-197 (260)
343 PRK06143 enoyl-CoA hydratase; 87.5 0.76 1.7E-05 55.8 5.6 86 1742-1829 100-199 (256)
344 TIGR00531 BCCP acetyl-CoA carb 87.5 0.69 1.5E-05 52.2 4.8 41 679-719 116-156 (156)
345 PRK03580 carnitinyl-CoA dehydr 87.5 0.78 1.7E-05 55.8 5.6 87 1742-1830 94-195 (261)
346 PRK05864 enoyl-CoA hydratase; 87.5 0.7 1.5E-05 56.7 5.2 86 1742-1829 109-210 (276)
347 PRK05617 3-hydroxyisobutyryl-C 87.4 23 0.0005 45.1 18.7 94 1942-2043 25-135 (342)
348 PRK06495 enoyl-CoA hydratase; 87.3 8.6 0.00019 46.8 14.3 96 1942-2045 25-134 (257)
349 TIGR03210 badI 2-ketocyclohexa 87.3 0.7 1.5E-05 56.1 5.0 85 1742-1828 94-193 (256)
350 PRK05995 enoyl-CoA hydratase; 87.2 8 0.00017 47.2 14.1 94 1942-2043 26-134 (262)
351 PRK05980 enoyl-CoA hydratase; 87.1 0.6 1.3E-05 56.7 4.4 85 1742-1828 100-199 (260)
352 PRK08272 enoyl-CoA hydratase; 87.1 0.64 1.4E-05 57.8 4.7 86 1742-1829 127-224 (302)
353 PRK08252 enoyl-CoA hydratase; 87.1 0.7 1.5E-05 56.0 4.9 85 1742-1828 91-190 (254)
354 PRK12478 enoyl-CoA hydratase; 87.0 0.7 1.5E-05 57.4 5.0 86 1742-1829 112-209 (298)
355 PRK07658 enoyl-CoA hydratase; 87.0 6 0.00013 48.1 12.8 94 1942-2043 23-129 (257)
356 PRK07938 enoyl-CoA hydratase; 87.0 0.75 1.6E-05 55.7 5.0 85 1742-1828 94-190 (249)
357 PRK07327 enoyl-CoA hydratase; 86.8 6.2 0.00013 48.4 12.8 94 1942-2043 34-141 (268)
358 PRK07511 enoyl-CoA hydratase; 86.8 9.1 0.0002 46.6 14.2 94 1942-2043 25-133 (260)
359 PRK05809 3-hydroxybutyryl-CoA 86.7 0.78 1.7E-05 55.7 5.1 85 1742-1828 97-196 (260)
360 PRK07659 enoyl-CoA hydratase; 86.7 8.3 0.00018 47.0 13.8 95 1942-2043 28-133 (260)
361 PRK08788 enoyl-CoA hydratase; 86.7 0.92 2E-05 56.1 5.7 87 1742-1830 121-222 (287)
362 PRK05869 enoyl-CoA hydratase; 86.7 7.7 0.00017 46.3 13.2 94 1942-2043 29-134 (222)
363 PLN02851 3-hydroxyisobutyryl-C 86.7 24 0.00053 45.9 18.4 104 1942-2049 64-186 (407)
364 PRK07854 enoyl-CoA hydratase; 86.6 25 0.00054 42.6 17.6 94 1942-2043 22-121 (243)
365 PRK08260 enoyl-CoA hydratase; 86.6 0.72 1.6E-05 57.2 4.7 84 1742-1827 113-211 (296)
366 PRK06143 enoyl-CoA hydratase; 86.5 7.3 0.00016 47.5 13.1 95 1941-2043 28-135 (256)
367 PRK08290 enoyl-CoA hydratase; 86.4 0.88 1.9E-05 56.3 5.3 88 1742-1831 118-218 (288)
368 PRK07658 enoyl-CoA hydratase; 86.3 0.9 2E-05 55.1 5.3 86 1742-1829 94-194 (257)
369 TIGR01108 oadA oxaloacetate de 86.3 1.5 3.2E-05 59.2 7.7 105 605-715 472-582 (582)
370 PRK07938 enoyl-CoA hydratase; 86.3 9 0.0002 46.5 13.7 94 1942-2043 23-129 (249)
371 PRK07396 dihydroxynaphthoic ac 86.0 0.88 1.9E-05 55.8 5.0 85 1742-1828 107-206 (273)
372 PRK07657 enoyl-CoA hydratase; 85.9 8.5 0.00018 46.9 13.4 94 1942-2043 26-132 (260)
373 PRK07468 enoyl-CoA hydratase; 85.9 0.8 1.7E-05 55.8 4.6 75 1742-1817 100-188 (262)
374 PRK08139 enoyl-CoA hydratase; 85.9 6.6 0.00014 48.1 12.4 94 1942-2043 33-139 (266)
375 PRK05981 enoyl-CoA hydratase; 85.8 9 0.00019 46.9 13.5 96 1942-2044 26-139 (266)
376 PF14243 DUF4343: Domain of un 85.8 7.6 0.00017 42.7 11.5 113 231-367 2-115 (130)
377 PRK09674 enoyl-CoA hydratase-i 85.7 12 0.00026 45.5 14.5 95 1941-2043 23-127 (255)
378 PRK05995 enoyl-CoA hydratase; 85.7 1.3 2.8E-05 53.9 6.2 84 1742-1827 99-196 (262)
379 PRK08138 enoyl-CoA hydratase; 85.5 29 0.00064 42.4 17.7 94 1942-2043 30-133 (261)
380 PRK11778 putative inner membra 85.5 7.6 0.00017 49.0 12.7 151 1965-2139 125-289 (330)
381 PRK05862 enoyl-CoA hydratase; 85.4 27 0.00057 42.6 17.2 94 1942-2043 26-129 (257)
382 PRK07468 enoyl-CoA hydratase; 85.4 12 0.00026 45.8 14.2 94 1942-2043 27-135 (262)
383 PRK11423 methylmalonyl-CoA dec 85.4 0.82 1.8E-05 55.7 4.3 84 1742-1827 96-194 (261)
384 KOG1680 Enoyl-CoA hydratase [L 85.3 1.1 2.4E-05 54.0 5.1 89 1743-1833 128-231 (290)
385 PRK08258 enoyl-CoA hydratase; 85.2 14 0.00031 45.5 14.9 94 1942-2043 39-148 (277)
386 PRK06688 enoyl-CoA hydratase; 85.2 27 0.00058 42.6 17.1 94 1942-2043 27-131 (259)
387 PLN02988 3-hydroxyisobutyryl-C 85.1 32 0.0007 44.5 18.4 93 1942-2042 31-139 (381)
388 PF13437 HlyD_3: HlyD family s 84.9 1.1 2.3E-05 46.6 4.4 34 726-759 1-35 (105)
389 PRK05674 gamma-carboxygeranoyl 84.8 9.8 0.00021 46.6 13.2 94 1942-2043 28-136 (265)
390 PF00529 HlyD: HlyD family sec 84.8 0.56 1.2E-05 57.6 2.6 33 725-757 2-35 (305)
391 cd07019 S49_SppA_1 Signal pept 84.4 2.7 5.8E-05 49.7 7.8 38 1743-1780 71-108 (211)
392 PRK06023 enoyl-CoA hydratase; 84.3 14 0.00031 44.7 14.2 95 1941-2043 27-132 (251)
393 cd06255 M14_ASTE_ASPA_like_5 A 84.0 2 4.4E-05 53.3 6.9 50 688-738 232-283 (293)
394 TIGR01929 menB naphthoate synt 83.9 12 0.00026 45.7 13.3 95 1942-2044 25-133 (259)
395 PRK06142 enoyl-CoA hydratase; 83.8 31 0.00068 42.4 17.0 94 1942-2043 28-144 (272)
396 PRK09439 PTS system glucose-sp 83.7 1.7 3.7E-05 49.6 5.6 64 690-757 23-126 (169)
397 PRK06563 enoyl-CoA hydratase; 83.6 18 0.00039 44.0 14.7 94 1942-2043 21-127 (255)
398 PRK05980 enoyl-CoA hydratase; 83.5 11 0.00023 46.0 12.8 94 1942-2043 25-135 (260)
399 TIGR01936 nqrA NADH:ubiquinone 83.5 1.1 2.3E-05 58.7 4.3 47 692-739 34-80 (447)
400 TIGR03794 NHPM_micro_HlyD NHPM 83.4 1.1 2.3E-05 58.3 4.4 32 688-719 59-90 (421)
401 TIGR03189 dienoyl_CoA_hyt cycl 83.2 15 0.00032 44.7 13.7 94 1942-2043 22-124 (251)
402 PRK07396 dihydroxynaphthoic ac 83.1 8 0.00017 47.6 11.5 97 1942-2046 35-145 (273)
403 PLN02983 biotin carboxyl carri 82.9 1.3 2.9E-05 53.2 4.5 34 686-719 240-273 (274)
404 TIGR03210 badI 2-ketocyclohexa 82.8 14 0.0003 45.1 13.3 94 1942-2043 24-129 (256)
405 PLN02226 2-oxoglutarate dehydr 82.7 1.7 3.7E-05 56.8 5.7 49 672-720 119-167 (463)
406 TIGR00830 PTBA PTS system, glu 82.7 1.9 4.2E-05 46.7 5.2 63 687-757 35-104 (121)
407 PLN03214 probable enoyl-CoA hy 82.6 1.4 3.1E-05 54.2 4.8 87 1742-1830 107-209 (278)
408 PRK07110 polyketide biosynthes 82.6 9.6 0.00021 46.2 11.7 94 1942-2043 27-129 (249)
409 KOG0238 3-Methylcrotonyl-CoA c 82.4 5 0.00011 51.7 9.3 112 637-756 512-634 (670)
410 PRK09120 p-hydroxycinnamoyl Co 82.4 12 0.00027 46.0 12.7 95 1941-2043 29-139 (275)
411 PRK05352 Na(+)-translocating N 82.3 1.9 4.1E-05 56.4 5.9 46 693-739 36-81 (448)
412 PLN02888 enoyl-CoA hydratase 82.3 19 0.00042 44.1 14.2 94 1942-2043 32-134 (265)
413 PRK07659 enoyl-CoA hydratase; 82.2 1 2.2E-05 54.9 3.2 73 1742-1815 98-185 (260)
414 PRK07112 polyketide biosynthes 81.9 19 0.00041 43.9 14.0 93 1942-2043 26-131 (255)
415 PRK14875 acetoin dehydrogenase 81.8 1.8 4E-05 54.4 5.5 36 687-722 45-80 (371)
416 COG1024 CaiD Enoyl-CoA hydrata 81.6 1.5 3.4E-05 53.1 4.5 89 1742-1831 98-201 (257)
417 cd06663 Biotinyl_lipoyl_domain 81.5 1.7 3.8E-05 42.2 4.0 32 687-718 42-73 (73)
418 PF05896 NQRA: Na(+)-transloca 81.2 1.9 4.2E-05 52.0 5.0 47 691-740 33-81 (257)
419 PRK08321 naphthoate synthase; 81.2 12 0.00027 46.7 12.3 97 1942-2045 47-173 (302)
420 COG1024 CaiD Enoyl-CoA hydrata 81.2 53 0.0012 40.0 17.4 104 1942-2049 27-146 (257)
421 TIGR00705 SppA_67K signal pept 80.8 8 0.00017 52.6 11.2 85 1948-2046 330-416 (584)
422 PRK08260 enoyl-CoA hydratase; 80.5 21 0.00046 44.5 13.9 96 1941-2044 25-149 (296)
423 cd07014 S49_SppA Signal peptid 80.0 1.5 3.2E-05 50.3 3.4 39 1743-1781 72-110 (177)
424 PF09891 DUF2118: Uncharacteri 79.7 1.8 3.9E-05 48.4 3.8 50 689-738 82-132 (150)
425 TIGR00715 precor6x_red precorr 79.4 6.6 0.00014 48.0 8.8 68 50-136 2-70 (256)
426 PF02571 CbiJ: Precorrin-6x re 79.1 8.1 0.00018 47.0 9.4 129 49-230 1-129 (249)
427 PRK08057 cobalt-precorrin-6x r 79.1 5.9 0.00013 48.2 8.2 72 47-138 1-72 (248)
428 KOG0559 Dihydrolipoamide succi 79.0 1.5 3.3E-05 54.0 3.2 38 684-721 112-149 (457)
429 PRK08272 enoyl-CoA hydratase; 79.0 16 0.00034 45.7 12.1 97 1942-2046 32-165 (302)
430 PRK06494 enoyl-CoA hydratase; 78.8 29 0.00063 42.4 14.1 93 1942-2043 26-129 (259)
431 PRK07854 enoyl-CoA hydratase; 78.5 1.6 3.5E-05 52.6 3.3 84 1742-1827 86-184 (243)
432 cd00394 Clp_protease_like Case 78.4 3.8 8.3E-05 46.0 6.1 39 1743-1781 58-96 (161)
433 PRK11556 multidrug efflux syst 78.4 2.5 5.5E-05 55.0 5.2 59 698-757 62-121 (415)
434 PRK06190 enoyl-CoA hydratase; 78.2 82 0.0018 38.6 17.7 95 1941-2043 25-129 (258)
435 PRK05870 enoyl-CoA hydratase; 78.2 1.5 3.3E-05 53.0 3.0 34 1742-1775 95-128 (249)
436 cd07016 S14_ClpP_1 Caseinolyti 77.9 2.5 5.5E-05 47.6 4.4 39 1743-1781 59-97 (160)
437 COG4770 Acetyl/propionyl-CoA c 77.9 6.6 0.00014 51.6 8.4 33 687-719 612-644 (645)
438 PRK11578 macrolide transporter 77.8 3.3 7.1E-05 53.0 6.0 59 697-756 35-94 (370)
439 TIGR03200 dearomat_oah 6-oxocy 77.8 2 4.3E-05 54.4 3.9 36 1742-1777 124-159 (360)
440 PLN02157 3-hydroxyisobutyryl-C 77.6 1.2E+02 0.0026 39.7 19.7 93 1942-2042 59-167 (401)
441 PF00529 HlyD: HlyD family sec 77.5 1.5 3.3E-05 53.8 2.8 31 689-719 3-33 (305)
442 PRK05864 enoyl-CoA hydratase; 77.4 28 0.00061 42.9 13.6 94 1942-2043 32-144 (276)
443 TIGR00998 8a0101 efflux pump m 77.4 2.3 5.1E-05 53.3 4.4 35 686-720 203-237 (334)
444 PLN02851 3-hydroxyisobutyryl-C 77.1 2.6 5.6E-05 54.6 4.7 86 1743-1831 139-238 (407)
445 PLN02267 enoyl-CoA hydratase/i 76.6 31 0.00067 41.7 13.4 92 1943-2042 22-129 (239)
446 PRK09578 periplasmic multidrug 76.3 3.3 7.1E-05 53.3 5.4 59 698-757 38-97 (385)
447 PRK10476 multidrug resistance 76.1 3.2 6.9E-05 52.6 5.1 50 704-757 32-82 (346)
448 PLN02921 naphthoate synthase 75.9 21 0.00047 45.2 12.2 97 1942-2046 89-199 (327)
449 PRK09859 multidrug efflux syst 75.9 3.5 7.6E-05 53.1 5.5 59 698-757 36-95 (385)
450 PRK06072 enoyl-CoA hydratase; 75.5 2.1 4.6E-05 51.7 3.2 33 1742-1774 89-121 (248)
451 PF06833 MdcE: Malonate decarb 75.3 8.8 0.00019 46.0 8.0 125 1602-1791 27-155 (234)
452 PRK05617 3-hydroxyisobutyryl-C 75.3 2 4.3E-05 54.5 3.0 38 1742-1779 100-137 (342)
453 PRK15136 multidrug efflux syst 75.1 2.4 5.1E-05 54.8 3.6 33 687-719 215-247 (390)
454 TIGR01000 bacteriocin_acc bact 75.0 2.6 5.7E-05 55.5 4.1 31 689-719 61-91 (457)
455 PLN02157 3-hydroxyisobutyryl-C 74.8 3.2 6.9E-05 53.7 4.6 87 1742-1831 133-233 (401)
456 PTZ00144 dihydrolipoamide succ 74.4 3.8 8.2E-05 53.2 5.1 36 685-720 85-120 (418)
457 PRK07509 enoyl-CoA hydratase; 74.4 73 0.0016 38.9 15.9 96 1942-2045 25-139 (262)
458 PLN02874 3-hydroxyisobutyryl-C 74.3 47 0.001 43.0 14.9 94 1942-2043 33-140 (379)
459 PRK06213 enoyl-CoA hydratase; 73.9 2.5 5.5E-05 50.5 3.2 87 1742-1830 91-193 (229)
460 TIGR02971 heterocyst_DevB ABC 73.5 3.5 7.6E-05 51.7 4.5 34 724-757 13-50 (327)
461 KOG0016 Enoyl-CoA hydratase/is 73.0 4 8.6E-05 49.1 4.4 86 1743-1829 108-211 (266)
462 KOG2799 Succinyl-CoA synthetas 72.9 13 0.00028 46.6 8.6 69 173-264 27-107 (434)
463 TIGR03200 dearomat_oah 6-oxocy 72.6 34 0.00073 43.8 12.6 94 1942-2043 50-159 (360)
464 TIGR01945 rnfC electron transp 71.3 3.4 7.4E-05 54.1 3.8 44 695-739 39-82 (435)
465 PF06849 DUF1246: Protein of u 71.3 2.3 4.9E-05 45.9 1.8 111 57-189 6-121 (124)
466 PRK09245 enoyl-CoA hydratase; 71.2 50 0.0011 40.5 13.5 94 1942-2043 25-138 (266)
467 TIGR00705 SppA_67K signal pept 71.0 69 0.0015 43.9 15.9 86 1946-2046 75-163 (584)
468 PRK07799 enoyl-CoA hydratase; 70.5 46 0.001 40.7 13.0 94 1942-2043 27-135 (263)
469 TIGR02437 FadB fatty oxidation 70.5 6 0.00013 55.0 6.0 85 1742-1828 102-201 (714)
470 PRK06210 enoyl-CoA hydratase; 70.2 56 0.0012 40.2 13.7 94 1942-2043 28-143 (272)
471 PRK00286 xseA exodeoxyribonucl 69.8 3.5E+02 0.0076 35.8 21.7 101 1945-2073 174-276 (438)
472 PRK10559 p-hydroxybenzoic acid 69.4 3.8 8.2E-05 51.3 3.5 33 725-757 48-81 (310)
473 COG1087 GalE UDP-glucose 4-epi 69.0 39 0.00084 42.2 11.5 68 49-136 1-72 (329)
474 KOG0016 Enoyl-CoA hydratase/is 68.8 68 0.0015 39.1 13.2 108 1942-2057 30-162 (266)
475 PRK10949 protease 4; Provision 68.8 74 0.0016 43.8 15.4 87 1946-2046 94-182 (618)
476 PRK05704 dihydrolipoamide succ 68.3 8.2 0.00018 50.2 6.2 46 676-721 34-79 (407)
477 PRK08259 enoyl-CoA hydratase; 68.3 1.8E+02 0.0038 35.6 17.3 95 1942-2044 25-129 (254)
478 PF12700 HlyD_2: HlyD family s 68.2 3.9 8.4E-05 50.8 3.2 40 715-757 14-54 (328)
479 TIGR01000 bacteriocin_acc bact 68.2 5.9 0.00013 52.2 5.1 33 725-757 60-93 (457)
480 PRK11730 fadB multifunctional 67.1 6 0.00013 55.0 5.0 85 1742-1828 102-201 (715)
481 TIGR00237 xseA exodeoxyribonuc 66.8 4.2E+02 0.0091 35.2 21.7 101 1944-2070 167-268 (432)
482 cd07023 S49_Sppa_N_C Signal pe 66.6 5.2 0.00011 47.1 3.7 38 1743-1780 67-104 (208)
483 PRK15030 multidrug efflux syst 66.4 7.5 0.00016 50.4 5.4 44 713-757 55-99 (397)
484 PRK10949 protease 4; Provision 66.4 1.2E+02 0.0026 41.9 16.6 85 1948-2046 348-434 (618)
485 COG4656 RnfC Predicted NADH:ub 66.3 8.1 0.00018 50.6 5.5 57 699-759 45-105 (529)
486 PF04952 AstE_AspA: Succinylgl 66.1 10 0.00022 46.8 6.2 67 687-755 220-290 (292)
487 PRK05035 electron transport co 65.9 5 0.00011 55.3 3.8 51 687-738 34-87 (695)
488 PRK11154 fadJ multifunctional 65.9 1.7E+02 0.0037 41.2 18.4 89 1942-2038 29-131 (708)
489 PRK04148 hypothetical protein; 65.8 18 0.00039 40.1 7.3 101 34-140 3-111 (134)
490 KOG0780 Signal recognition par 65.5 9.2 0.0002 48.4 5.5 117 1602-1779 127-274 (483)
491 COG1064 AdhP Zn-dependent alco 65.5 26 0.00057 44.5 9.5 98 43-163 162-261 (339)
492 TIGR01730 RND_mfp RND family e 65.4 5.3 0.00012 49.5 3.6 33 724-756 26-59 (322)
493 PRK08290 enoyl-CoA hydratase; 65.2 45 0.00097 41.6 11.5 94 1942-2043 26-153 (288)
494 TIGR01843 type_I_hlyD type I s 65.1 7.4 0.00016 50.3 5.0 36 723-758 42-78 (423)
495 PF01343 Peptidase_S49: Peptid 65.1 19 0.00041 40.6 7.6 43 1998-2047 3-45 (154)
496 PRK12478 enoyl-CoA hydratase; 64.3 1.1E+02 0.0025 38.2 14.9 98 1942-2047 27-151 (298)
497 KOG0369 Pyruvate carboxylase [ 64.1 64 0.0014 43.3 12.5 104 649-756 1072-1176(1176)
498 PRK03598 putative efflux pump 63.6 7 0.00015 49.3 4.2 45 686-730 202-247 (331)
499 PRK08252 enoyl-CoA hydratase; 63.5 1E+02 0.0022 37.6 14.0 94 1942-2043 25-126 (254)
500 TIGR02440 FadJ fatty oxidation 63.0 9.6 0.00021 53.0 5.7 84 1743-1828 97-197 (699)
No 1
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=0 Score=4501.47 Aligned_cols=2146 Identities=52% Similarity=0.846 Sum_probs=2040.4
Q ss_pred CCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh
Q 000092 22 GAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI 101 (2267)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ 101 (2267)
.+.+...++..+.+.|||+++||+++|+||||||||++|++||||+|+|.|++|++|++|+||+|+||+|+.+|++|+||
T Consensus 28 ~~~~~~~~~~~s~v~efvk~~gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrm 107 (2196)
T KOG0368|consen 28 LGGNSSDDFTVSKVAEFVKRLGGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRM 107 (2196)
T ss_pred ccCCcccccccccHHHHHHHhcCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhh
Confidence 46777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHH
Q 000092 102 ADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQ 181 (2267)
Q Consensus 102 ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq 181 (2267)
||+++.+|+|+|+|||+|+|.|+++|++..+||||+||||+||||++|++|.+.||.|+|||..+|+.+|||+.+.++||
T Consensus 108 ADqyvevPgGtNnNNyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQ 187 (2196)
T KOG0368|consen 108 ADQYVEVPGGTNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQ 187 (2196)
T ss_pred hhheeeCCCCCCCCCcccHHHHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCCCCCccC---CCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHH
Q 000092 182 AANVPTLPWSGSHVKI---PPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 258 (2267)
Q Consensus 182 ~aGVPtpp~~~~~~~~---~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a 258 (2267)
.+||||.||+++|+++ +.+.++++||+|+|.+||+.+++|++++|++||||+|||+++||||||||+|++.+|+...
T Consensus 188 sa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~l 267 (2196)
T KOG0368|consen 188 SAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKAL 267 (2196)
T ss_pred hcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHH
Confidence 9999999999999994 4455789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 000092 259 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAK 338 (2267)
Q Consensus 259 ~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~ 338 (2267)
|++++.|.||+|||+|+.+.++||+|||+++|+||+++++++||||+||||||||||+|+++.+++++++|+++|+||++
T Consensus 268 f~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak 347 (2196)
T KOG0368|consen 268 FKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAK 347 (2196)
T ss_pred HHHHHhhCCCCceeeeecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccc
Q 000092 339 CVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWR 418 (2267)
Q Consensus 339 aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~ 418 (2267)
.+||+++|||||+|.|++|+|||||+|||||||||+|||++|||||++|||+|||+||++|||||+|||.+|+|
T Consensus 348 ~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~G------ 421 (2196)
T KOG0368|consen 348 LVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTG------ 421 (2196)
T ss_pred hhcceecceEEEEEecCCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEE
Q 000092 419 KTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFA 498 (2267)
Q Consensus 419 ~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via 498 (2267)
+++|+|+ .+..|.|+||||+||||+|||+++|+|++|+|++|+|+|+++||+||+|+.|+.||+|.||||||||+
T Consensus 422 ---dS~idfe--~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa 496 (2196)
T KOG0368|consen 422 ---DSPIDFE--NAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFA 496 (2196)
T ss_pred ---CCCCChh--hccCCCCCceEEEEEeeccCCCCCcCCCCCeeEEeccCCCCCeeEEEEecCCCceeeccccccceeee
Confidence 9999998 47789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHH
Q 000092 499 FGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASA 578 (2267)
Q Consensus 499 ~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 578 (2267)
+|+||++|+++|+.|||+++|||+|+|+++||++||++++|++|+|+|+|||.+|++++++++|+++++++|||+.+++.
T Consensus 497 ~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeYLI~LLet~dF~~N~i~TgWLD~~Ia~kv~~~~p~~~l~VvcgAa~~g~~ 576 (2196)
T KOG0368|consen 497 FGESRQEAIANMVVALKELSIRGDFRTTVEYLIDLLETEDFESNKIDTGWLDKRIAMKVRAERPDIMLAVVCGAAVKGSS 576 (2196)
T ss_pred ecCcHHHHHHHHHHHHHheeeccccCchHHHHHHHHHhhhhhhccCcchhHHHHHHHHhhccCCCcceeeehhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccCCCCCCcccccceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCce
Q 000092 579 SSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNS 658 (2267)
Q Consensus 579 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s 658 (2267)
.....+..|.++|++||+||++.+.+.++++|+++|.+|.++|++.++++|++.+||+.++|.++.++||++++.+||++
T Consensus 577 ~~~~~~~~y~~~LerGQV~p~~~L~~~~~vdli~e~~kY~lkV~rss~~~y~l~mngs~~~v~v~~L~dggLli~~~Gks 656 (2196)
T KOG0368|consen 577 TSRTVFEKYEHSLERGQVPPKDFLLNTFDVDLIYEGNKYTLKVVRSSSGTYVLRMNGSEVTVGVHQLSDGGLLISLDGKS 656 (2196)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHhhhcceeEEEecCcEEEEEEEecCCceEEEEEcCcEEEEEEEEecCCcEEEEECCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 659 HVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 659 ~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
|++|++++.+++++.+|+.+|.|++++||++|+||.|||+++|+|++|+||++||+||+||+|||.|+|.|+++|+|+.+
T Consensus 657 ~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i 736 (2196)
T KOG0368|consen 657 YTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLI 736 (2196)
T ss_pred EEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCCCEEEEEecCCCCccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhhc
Q 000092 739 MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCL 818 (2267)
Q Consensus 739 ~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l~~iL~GYd~~~~~~l~~l~~~L 818 (2267)
++||+.+++|++||.+++|+||+|+++.||+|+||.++.|...|+|+|++|+..++.|.|||+|||+.+++++++|+++|
T Consensus 737 ~~~G~~i~aG~vlakL~lDdpSkv~~a~pf~G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~L 816 (2196)
T KOG0368|consen 737 KQEGDAIEAGSVLAKLTLDDPSKVQHALPFHGSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVL 816 (2196)
T ss_pred cCCCCccCccceeEEeecCChhhhcccCCccccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhccccCCCCchhhHHHHHHHHHhhccccccchhhHhhhhHHH
Q 000092 819 DSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMS 898 (2267)
Q Consensus 819 ~dp~LP~~e~~~~ls~Ls~RiP~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 898 (2267)
+||+|||+||++++|+|++|||+.|++.+..++++|+++. .+||+++|.++++.|+++++..+|..++..++||++
T Consensus 817 r~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~----t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~ 892 (2196)
T KOG0368|consen 817 RDPELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRI----TQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLK 892 (2196)
T ss_pred cCCCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhc----ccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHH
Confidence 9999999999999999999999999999999999988875 499999999999999999988999999999999999
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHHHhhhcccC--CCcHHHHHHHHHHhchhhHHHHHHHHHhcccccchHHHHHHHHHhh
Q 000092 899 LVKSYEGGRESHARVIVQSLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQL 976 (2267)
Q Consensus 899 ~~~~~~~G~~~~~~~~~~~ll~~y~~ve~~f~--~~~~~~~i~~lr~~~k~~~~~v~~~~~sh~~~~~k~~lv~~ll~~~ 976 (2267)
|+++|++|+++|++.++++||++|++||++|+ +..+|+||..||++||+|+.+|+++++||+++.+||+||++||+++
T Consensus 893 l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l 972 (2196)
T KOG0368|consen 893 LVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNGRDSHYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQL 972 (2196)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999 6689999999999999999999999999999999999999999998
Q ss_pred cCCCC---hhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHh-hhccccCCCCCCccCccchHHHH
Q 000092 977 VYPNP---AAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL-EMFTEDGESMDTPKRKSAIDERM 1052 (2267)
Q Consensus 977 ~~~~~---~~~~~~L~~l~~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 1052 (2267)
+...+ ..|+++|.+|++|+++.+++||++|||+|+++ ||++.|++|+++|+ +.+. ++|... +.+|.+.|
T Consensus 973 ~~~s~~~~~~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~~--ps~~~R~n~~e~i~~s~i~-~~g~~~----~~~~~~~l 1045 (2196)
T KOG0368|consen 973 KPPSSKVSDEFRDILRKLTELNHTNTSEVALKARQILIQS--PSYELRHNQIESILKSSIV-MTGYQF----KKPCLEIL 1045 (2196)
T ss_pred cCCCCCCCHHHHHHHHHHHhhccchHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhhhh-cccCcc----cccchhHH
Confidence 77333 46999999999999999999999999999999 99999999999999 5554 455522 24799999
Q ss_pred HHhhcCCchhHHhhhhhcCCCCHHHHHHHHHHHHhhcccccccccccceeeeecceEEEEEEecccccccC-CCCCCCC-
Q 000092 1053 EDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPEDQTP- 1130 (2267)
Q Consensus 1053 ~~l~~s~~~~~d~L~~~f~~~~~~~~~~alevyvrr~Y~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~- 1130 (2267)
++|++|++++||+|+.||+|+|++++.+||||||||+|++|.++++...++....++++|+|.+|+ |.+ +.++...
T Consensus 1046 ~~lidS~~~v~dvL~~fF~H~d~~v~~~alevYv~ray~ay~v~si~~~~~~~~~~v~~~~F~l~~--~~n~~~~~~~~n 1123 (2196)
T KOG0368|consen 1046 KELIDSNLSVFDVLPGFFYHSDPTVSSAALEVYVRRAYIAYVVKSIKHHQGAPSPCVVSWHFSLPS--RKNISLSPSELN 1123 (2196)
T ss_pred HhhccchhhHHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCceEEEEEEeccc--cccCCCCccccc
Confidence 999999999999999999999999999999999999999999993333333345589999999976 211 1111111
Q ss_pred ---CCcccccccccceeEEEEccCcCcHHHHHHHHHhhccc----CCCCccccCCCCcCCCCcEEEEEEecccccccccC
Q 000092 1131 ---EQPLVEKHSERKWGAMVIIKSLQSFPDILSAALRETAH----SRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQ 1203 (2267)
Q Consensus 1131 ---~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 1203 (2267)
.... ..+.+.|.|.|+.+++|+++...+++++++... ...+.. +.+. .+..+|++||.+.. ..
T Consensus 1124 ~~~~v~~-~~s~~~r~G~mv~~~tf~d~~~~~~~~l~~~~~~~~~~~~~~a-~~~~-~s~~~~~~nv~~~~-------t~ 1193 (2196)
T KOG0368|consen 1124 ELSVVDS-GKSSPQRFGTMVAFRTFEDLVRILDEVLDCLKHSPREYPNPEA-DTSL-SSADINNVNVLLQS-------TG 1193 (2196)
T ss_pred chhhhhc-cCCchhhcchhhhHHHHHHHHHHHHHHHHhhccCccccCCccc-cccc-ccchhhheeeeecc-------cC
Confidence 1111 223458999999999999999999999999221 111111 1111 12338888988874 34
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcccccCcccCCeeEEEEEEecCCCCCCeeEEeccCCccCCCccccccccCCCCcchhhh
Q 000092 1204 DSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPLSIYLE 1283 (2267)
Q Consensus 1204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vrrvt~~~~~~~~~~p~~ftfr~~~~~~~~~Ed~~~R~~~p~~a~~Le 1283 (2267)
+. +++++..+|.+++++++. .|..++||||||++.+..+++|+||||. ++.|.||+.+||++|+++||||
T Consensus 1194 d~-e~~~~~~~L~~~l~e~~~-----~l~~~~v~rit~~~~~~~~~~pk~~tf~----~~~y~ed~~~rhlepal~~~LE 1263 (2196)
T KOG0368|consen 1194 DL-EDEELVSKLREILQEEER-----SLADHGVRRITFIIGREEGRYPKFYTFN----GDYYNEDRILRHLEPALAFQLE 1263 (2196)
T ss_pred ch-hhhHHHHHHHHHHHHHHH-----HHHhcccceEEEEeeeccccCcceeecc----ccccccccccccCChhHHHHHH
Confidence 44 466899999999999999 8999999999999998878999999994 2689999999999999999999
Q ss_pred hccccCCCCceeeccCCCcceEEEeecCCCCceeEEEEEeecCCCCCCCCcccccccCCccccccccccchHHHHHHHHH
Q 000092 1284 LDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMA 1363 (2267)
Q Consensus 1284 l~rl~nf~~~~~~p~~~~~~hly~~~~k~~~d~r~f~r~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~ld 1363 (2267)
|+||+||+ |+++||.|++||+|.+++|..+|+|||+|++||+++++++.+++ || ++++++|++.++||
T Consensus 1264 L~rl~n~~-i~~~p~~n~~~h~y~~~sk~~pdkrfF~R~ivR~~~~~d~~~~~---E~--------l~se~~r~l~~ald 1331 (2196)
T KOG0368|consen 1264 LDRLSNYN-ITSVPTDNHKIHLYSVTSKVSPDKRFFVRAIVRQGDLNDDKATA---EY--------LQSEANRLLLDALD 1331 (2196)
T ss_pred HhhhhcCC-cccccccCcceEEEeeecccCchHHHHHHHHhhhhccccchhhH---HH--------HHHHHHHHHHHHHH
Confidence 99999998 99999999999999999999999999999999999999999999 88 89999999999999
Q ss_pred HHHHHHhcccccCCCCCccEEEEEEeccccccccCCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccceeEEE
Q 000092 1364 AMEELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWE 1443 (2267)
Q Consensus 1364 ~le~~~~~~~~~~~~~~~nhifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~rl~~l~v~~~e 1443 (2267)
+||++. + ....++||||||+|| .|.+.++| .+++++++.|++|||+|||+|||++||
T Consensus 1332 ~leva~-~--~~~~~td~nhiFl~f---~~~~~i~p-----------------~~~ee~v~~~~~~~g~Rl~~lrv~~ae 1388 (2196)
T KOG0368|consen 1332 ELEVAN-N--TDASKTDLNHIFLNF---VPVVIIDP-----------------SKLEEAVRGILKRIGKRLWRLRVTEAE 1388 (2196)
T ss_pred Hhhhhh-h--cccccccccceeeec---ceeeccCH-----------------HHHHHHHHHHHHHHHHHHHHhhhceee
Confidence 999983 3 234579999999999 99999999 899999999999999999999999999
Q ss_pred EEEEEeecc-CCCCceEEEEeCCCCcEEEEEEEEEeecCCCceEEEEEeecccccCCCcccccccCcchhhHHHHHhhcC
Q 000092 1444 VKLWMAYSG-QANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLGVLDQKRLLARRS 1522 (2267)
Q Consensus 1444 ~~~~~~~~~-~~~~~~R~~~~n~sG~~~~~~~Y~E~~~~~~~~~~~~~~g~~g~~~~~~~~~py~~~~~~~~kr~~a~~~ 1522 (2267)
+|++++... ...+|+|++++|.|||++++++|+|+++.+|.++ |+++|++||+||+||++||++||+||.||++||++
T Consensus 1389 i~i~~~~~~t~~~~p~R~~i~NesGyv~~~e~y~Ev~~~~~~~i-~~s~gk~g~~h~~~istpY~~kd~lq~KR~~A~~~ 1467 (2196)
T KOG0368|consen 1389 IRIIIRDPGTGAPGPLRLVISNESGYVVTTEVYTEVKERNGSLI-FHSIGKQGPLHGRPISTPYPPKDWLQPKRLAARRM 1467 (2196)
T ss_pred EEEEEecCCCCCCcceEEEEEcccccEEEEEEEEeecccCccee-eeccCCCCcccccccCCCCCCchhhcHHHHHHHhc
Confidence 997666653 2355999999999999999999999999777777 99999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCC-CCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEEEEecCccc
Q 000092 1523 NTTYCYDFPLAFETALEQSWASQFP-NMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEF 1601 (2267)
Q Consensus 1523 ~t~y~yd~~~~~~~al~~~w~~~~~-~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~ 1601 (2267)
||||+||||+||++|+.+.|++..+ .+...|.+++++.||++|+ +| .|.+++|.||.|.||||||.++++||||
T Consensus 1468 gTTYiYDFP~~F~~a~~~~Wks~~~~~k~~~~~~~f~~~ELV~de-~g----~L~~vnR~pG~N~~GMVAw~~~~~TpEy 1542 (2196)
T KOG0368|consen 1468 GTTYIYDFPEMFRQAASKLWKSPSSGVKVKLWDDFFQVKELVLDE-NG----ELTEVNREPGLNSCGMVAWKLTVKTPEY 1542 (2196)
T ss_pred CCeEEeecHHHHHHHHHHhhcCCCcccCCCcchhhheeeeeeecC-CC----cEEEeccCCCCCcceeEEEEEEecCCCC
Confidence 9999999999999999999998754 2346778999999999998 88 8999999999999999999999999999
Q ss_pred cCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccccccCCCCCCCCcccc
Q 000092 1602 PSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYV 1681 (2267)
Q Consensus 1602 ~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~l 1681 (2267)
|+||+++||+||+||+.|||||.||+.|.++++|||+.|||+||+++|||||||+||++.++|+|+|+|+.+|++||.||
T Consensus 1543 P~Gr~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~~~iPrIylaaNSGARIGlAeei~~lfkVaw~d~~~P~kgF~Yl 1622 (2196)
T KOG0368|consen 1543 PEGRDLIVIGNDVTFQIGSFGPREDLLFLAASELAREKGIPRIYLAANSGARIGLAEEIKPLFKVAWVDEDDPEKGFQYL 1622 (2196)
T ss_pred CCCceEEEEeccceEeccCCCChHHHHHHHHHHHHHhcCCCeEEEeccCccccccHHHHHHHheeeccCCCCcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHhhccce-eeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEEEEEcCcccchhhhh
Q 000092 1682 YLTPEDYARIGSSV-IAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYL 1760 (2267)
Q Consensus 1682 y~~~~~~~~l~~~~-~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~iptis~vtg~~~G~gAyl 1760 (2267)
|+++++|+++.+.+ .+++++ +.||.||+|++|||+++|||||||+|||+||||||+||++|||||+||||++|||||+
T Consensus 1623 Ylt~ed~~ri~~~~v~~e~~~-~~GE~R~~I~~IiGkeeglGVEnL~GSGlIAGetSrAY~ei~T~t~VT~RsVGIGAYl 1701 (2196)
T KOG0368|consen 1623 YLTPEDYERIGSSVVHCEVVE-ESGEERLKIKAIIGKEEGIGVENLRGSGLIAGETSRAYNEIFTITLVTGRSVGIGAYL 1701 (2196)
T ss_pred EECHHHHHHhhcccceeEEEe-ecCcceEEEEEEecccccccceeccccccccchhhhhhhccceEEEEecceeeHHHHH
Confidence 99999999997664 445445 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCC
Q 000092 1761 ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALP 1840 (2267)
Q Consensus 1761 ~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p 1840 (2267)
+|||+|+||+++++|||||++||||+||++|||||.||||+|||+.|||+|++|.||++|+++|+.||||+|..+++++|
T Consensus 1702 vRLgqR~IQve~~~iILTGa~ALNklLGreVYTSN~QLGG~qIM~~NGVsHlTv~dDleGV~ki~~WlSY~Pa~~~~~~P 1781 (2196)
T KOG0368|consen 1702 ARLGQRIIQVEDQHIILTGASALNKLLGREVYTSNNQLGGPQIMHRNGVSHLTVSDDLEGVAKILNWLSYLPAKRNSPVP 1781 (2196)
T ss_pred HHHHHHHHHhcCCceEEeCHHHHHHHhcccccccccccCCeEEeccCCceEEEecccHHHHHHHHHHHHhCCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccCCC--CCCChHHHhcccccCCCCcccccccCCCceeccccccceEEEEEEEECCeEEEEEEEeccc
Q 000092 1841 IISPLDPPDRPVEYLPE--NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQT 1918 (2267)
Q Consensus 1841 ~~~~~d~~~r~~~~~P~--~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~ 1918 (2267)
+.++.|||+|+++++|. .+|||||+|+++.++++ |++||||+|||+|++.+||++||||||||||+||||||+|+++
T Consensus 1782 ~l~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~-~~~GlFDk~SF~Eil~~WAktVV~GRArLgGIPvGVIavEtrt 1860 (2196)
T KOG0368|consen 1782 FLEPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTG-WLSGLFDKGSFDEILSGWAKTVVTGRARLGGIPVGVIAVETRT 1860 (2196)
T ss_pred ccCCCCCcccceeccCCCCCCCCHHHHhcCCcCCCc-cccccccCccHHHHHhHHhhHheecceecCCcceEEEEEEeee
Confidence 99999999999999999 99999999999999988 9999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHh
Q 000092 1919 VMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLR 1998 (2267)
Q Consensus 1919 ~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~ 1998 (2267)
++.++||||||+||+|++++++||+|||+||+||||||++||+++|||++|+||+||+||++||++++||+||.|+++|+
T Consensus 1861 ve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVDaL~ 1940 (2196)
T KOG0368|consen 1861 VENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVDALR 1940 (2196)
T ss_pred eeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHH
Q 000092 1999 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQ 2078 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~ 2078 (2267)
.|++|+++||||.|+++||+|+|+||+||++.|||||+..||+||++|+|.|+||||+++++++|.|+||.|+.|+.++.
T Consensus 1941 ~YkQPv~vYIPp~gELRGGsWvVvD~tIn~~~memyAD~~sRggVLEPeg~v~IKfRre~Lle~MrR~D~~y~~L~~~l~ 2020 (2196)
T KOG0368|consen 1941 QYKQPVLVYIPPMGELRGGSWVVVDPTINPDQMEMYADEESRGGVLEPEGVVEIKFRREMLLEMMRRLDPTYIKLKSSLS 2020 (2196)
T ss_pred HhCCceEEEcCcchhhcCceEEEEcCccCHHHHHHHhhhhhccccccCCceEEEEeeHHHHHHHHHhcchhhhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHHHHHhHHHHHH
Q 000092 2079 EAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVK 2158 (2267)
Q Consensus 2079 ~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~l~e~~~~~ 2158 (2267)
++ ++++++++.++++|++||++|+|+|+|++++|||+||+++||++||+|..+++|.++|+||||+|||||+|+.+++
T Consensus 2021 ~~--~ls~~~~~~l~kqLk~Re~~L~piY~QisvqFAdlHDr~~RM~~kgVI~~~lew~~sRrffywrLrr~l~e~~~~~ 2098 (2196)
T KOG0368|consen 2021 EA--KLSPEDRKDLQKQLKEREEQLLPIYNQISVQFADLHDRSGRMKAKGVISKVLEWTESRRFFYWRLRRRLAEDQLLK 2098 (2196)
T ss_pred cc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 87 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhhcccccccCCCCccCchhhHHhhcCchHHHHHHHHHhHHHHHHHHHHhcccCCcccc
Q 000092 2159 TLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQA 2238 (2267)
Q Consensus 2159 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2238 (2267)
+|..+.+. +|+.+.+++|++||.++. ++. .|+||+.|++|+|++.+|+++|++|+.+++.++|+.+++++ ++.+
T Consensus 2099 ~i~~~~p~-lt~~~~~~~l~~w~~~~~-~~~---~~~~d~~v~~w~e~~~~~~~~i~~l~~~~~~~~l~~~~~sd-~~~~ 2172 (2196)
T KOG0368|consen 2099 EILSASPD-LTYKEKQAMLQKWFEESE-GAV---KWEDDQQVVTWIEEQSTIEKNIEELKETYLLDQLAKLINSD-RKGA 2172 (2196)
T ss_pred HHHHhCcc-cchHHHHHHHHHHHHHhc-ccc---ccccchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhC-hhhH
Confidence 99999995 899999999999998755 333 39999999999998888999999999999999999999997 8888
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHH
Q 000092 2239 LPQGLATLLSKVDPSCREQLIGEIS 2263 (2267)
Q Consensus 2239 ~~~~~~~~~~~~~~~~~~~~~~~l~ 2263 (2267)
++ ||.++++++|+.+|++++.+|+
T Consensus 2173 ~~-~l~~~~~~is~~~r~el~~~l~ 2196 (2196)
T KOG0368|consen 2173 ID-GLAELLNKISPKRREELVGALS 2196 (2196)
T ss_pred HH-HHHHHHHhcChHHHHHHHHhhC
Confidence 88 9999999999999999999874
No 2
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=1.3e-122 Score=1113.07 Aligned_cols=626 Identities=31% Similarity=0.500 Sum_probs=529.5
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
||+||||||||++|||+||+||++|+.++ ++|+|.|+++.|+++||+.|.+++.+..++|++.+.|+++
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tV-----------AVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~A 69 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTV-----------AVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDA 69 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceE-----------EEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHH
Confidence 78999999999999999999999988875 6677999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|||||||||+|||++|+++|++.|+.|||||+++++.+|||+.+|.++.++|||+.|.+.
T Consensus 70 a~~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~-------------- 135 (645)
T COG4770 70 ARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYH-------------- 135 (645)
T ss_pred HHHhCcccccCCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999665
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rh 282 (2267)
+.+.+.+++...+++|||||+||++.||||||||+|++++|+.++|+.+++|+. .+.+|||+|++.+||
T Consensus 136 -------g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRH 208 (645)
T COG4770 136 -------GPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRH 208 (645)
T ss_pred -------CcccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCce
Confidence 348899999999999999999999999999999999999999999999998864 468999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+|+|+|+|+|||++++++||||+||||||+|||+|+|.++++++++|.++|+++++++||.|++||||+++. ++.||||
T Consensus 209 IEiQV~aD~HGNvv~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~-~~~f~Fl 287 (645)
T COG4770 209 IEIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDA-DGNFYFL 287 (645)
T ss_pred EEEEEEecCCCCEEEeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcC-CCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 7789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||+|||+|||+||++||+||+++||++|.|++|+. .|.+.+.+||+|
T Consensus 288 EMNTRLQVEHPVTE~iTGiDLVewqiRVA~GekL~~--------------------------------~Q~di~l~GhAi 335 (645)
T COG4770 288 EMNTRLQVEHPVTELITGIDLVEWQIRVASGEKLPF--------------------------------TQDDIPLNGHAI 335 (645)
T ss_pred EeecceeccccchhhhhhhHHHHHHHHHhcCCcCCc--------------------------------ccccccccceeE
Confidence 999999999999999999999999999999999974 345566779999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++|||+|||..+|+|++|+|..+.+|..++||++.+|..|+.|++|||||++|+|+||.||++|+++|.+||+++.|.|
T Consensus 336 E~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~G- 414 (645)
T COG4770 336 EARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEG- 414 (645)
T ss_pred EEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHHhhhhh--hhccccccccCCCCCCc
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAM--VSDYIGYLEKGQIPPKH 600 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~g~~~~~~ 600 (2267)
+.||++||+.++++|.|+.|+.+|+||++.+++.+ ...|....+..++++.. ....+.. .+.|.+.. |...
T Consensus 415 i~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~-~~~~~~~~~~aa~~~~~-~~~~~~~~~~~pw~~~~--~w~~--- 487 (645)
T COG4770 415 IATNIPFLRALMADPRFRGGDLDTGFIAREIEDLF-APAPASADALAAAALLA-QPALERRAESDPWASLS--GWVV--- 487 (645)
T ss_pred ccccHHHHHHHhcCcccccCCCcceeeeecccccc-cCCCchhhhHHHHHhhh-chhhhcccccCcccccC--Ccee---
Confidence 99999999999999999999999999999998877 23333333333322221 1111110 01111100 0000
Q ss_pred ccccceeeeEeecCe-EEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCcee
Q 000092 601 ISLVNSQVSLNIEGS-KYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTC 679 (2267)
Q Consensus 601 ~~~~~~~vel~~~g~-~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~ 679 (2267)
......+.+..++. .+.+.+... ++.. ...+... .......+.++|......+.....++++...|...
T Consensus 488 -~~~~~~~~~~~~~~~~~~v~l~~~-~g~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 557 (645)
T COG4770 488 -TGDAAELRVLIDGEERVEVRLPAR-EGRE-------RFYVDSD-WDPELASAALSGRKRAVRVARAGGGLTLFWGGGSP 557 (645)
T ss_pred -ecceeeeeEEecCCcceEEEEecc-CCcc-------eeeeecc-CCccceeEEecCccccceeeecCCceEEecCCcCc
Confidence 00011111222222 233322211 1110 1111110 01122445556666655555555666666655554
Q ss_pred ecc----------cCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCC
Q 000092 680 LLQ----------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAG 748 (2267)
Q Consensus 680 ~~~----------~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G 748 (2267)
.+. ....++.|+|||||+|+++.|++|+.|.+||+|++|||||||++|+||.+|+|+.+ +++|++|..|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g 637 (645)
T COG4770 558 RIAELDKLGGAKVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVG 637 (645)
T ss_pred ccccccccccccccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccC
Confidence 443 12345679999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CEEEEEe
Q 000092 749 ELIARLD 755 (2267)
Q Consensus 749 ~~La~l~ 755 (2267)
++|++++
T Consensus 638 ~vLve~~ 644 (645)
T COG4770 638 TVLVEFE 644 (645)
T ss_pred ceEEEec
Confidence 9999986
No 3
>PF08326 ACC_central: Acetyl-CoA carboxylase, central region; InterPro: IPR013537 This region is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (IPR000022 from INTERPRO). Enzymes containing this domain (6.4.1.2 from EC) are involved in the synthesis of long-chain fatty acids, as they catalyses the rate limiting step in this process. ; GO: 0003989 acetyl-CoA carboxylase activity, 0005524 ATP binding, 0006633 fatty acid biosynthetic process; PDB: 2DN8_A 2KCC_A 3COJ_H.
Probab=100.00 E-value=2.5e-126 Score=1244.83 Aligned_cols=678 Identities=36% Similarity=0.534 Sum_probs=3.5
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHhhcCCCCCchhHHHHHH
Q 000092 755 DLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHN--IEEVVQNLLNCLDSPELPLLQWQECM 832 (2267)
Q Consensus 755 ~~~~~~~v~~~~~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l~~iL~GYd~~--~~~~l~~l~~~L~dp~LP~~e~~~~l 832 (2267)
++||||+|++++||+|+||.++.|...|.|+|++|+.+++.|+|||+||++. ++++|++|+++|+||+|||+||+++|
T Consensus 1 ~LDDPS~V~~a~pF~G~lp~~~~~~~~g~k~~~~~~~~~~~l~niL~GY~~~~~~~~~v~~L~~~L~dp~LP~~E~~e~l 80 (708)
T PF08326_consen 1 ELDDPSKVKKAQPFEGTLPEMGPPQIEGEKPHQRFRAALEILHNILAGYDNQNIMNETVKELFEVLRDPELPYLEWQEVL 80 (708)
T ss_dssp E-S-S----S----------------------------------------------------------------------
T ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999654 99999999999999999999999999
Q ss_pred HHhhcCCChhHHHHHHHHhhhhhhhccccCCCCchhhHHHHHHHHHhhccccccchhhHhhhhHHHHHHhhcCChhhHHH
Q 000092 833 AVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912 (2267)
Q Consensus 833 s~Ls~RiP~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~G~~~~~~ 912 (2267)
|+|++|||++|+++|++.+++|+.+. .+||+++|+++++.|++ +.+ |+.|+++++||.+++++|++|+++|++
T Consensus 81 s~l~~RiP~~l~~~i~~~~~~~~~~~----~~FPa~~l~~~i~~~~~-~~~--r~~~~~~~~pL~~l~~~y~~G~~~h~~ 153 (708)
T PF08326_consen 81 SALSGRIPAKLEAQIRQLLERYKSRI----TSFPAKQLRKIIDSYLA-LEP--RAAFFATVAPLVDLVQRYRGGLKGHAK 153 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccCCHHHHHHHHHHHHHHhhcc----CCCcHHHHHHHHHhhhc-cCc--HHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999999999998877764 44999999999999999 633 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhchhhHHHHHHHHHhcccccchHHHHHHHHHhhcCCC---ChhHHHHHH
Q 000092 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPN---PAAYRDKLI 989 (2267)
Q Consensus 913 ~~~~~ll~~y~~ve~~f~~~~~~~~i~~lr~~~k~~~~~v~~~~~sh~~~~~k~~lv~~ll~~~~~~~---~~~~~~~L~ 989 (2267)
+++.+||++|++||++|+++++|+||..||++||+|+++|+++++||++++.||+||++||+++...+ ...++++|+
T Consensus 154 ~v~~~LL~~Yl~VE~~F~~~~~d~vI~~LR~~~k~dl~~Vv~~~~SH~~v~~Kn~Lil~lL~~l~~~~~~~~~~~~~~L~ 233 (708)
T PF08326_consen 154 SVVADLLEEYLSVEKLFQGKRYDDVILSLREENKDDLDKVVDIILSHSQVKSKNKLILALLDQLSEPNMPLTASLRDILK 233 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999986663 357999999
Q ss_pred HHHhccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHh-h--h-ccccCCCCCCccCccchHHHHHHhhcCCchhHHh
Q 000092 990 RFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL-E--M-FTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDA 1065 (2267)
Q Consensus 990 ~l~~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~~~~d~ 1065 (2267)
+|++|++++|++|||+|||||++|++||+++|++||+++| + . .++.||+..+.++ +++.++|++||+|++++||+
T Consensus 234 ~La~L~~~~~~~VAL~AR~iLi~~~lPS~e~R~~q~e~iL~s~~~v~~~~~g~~~~~~~-~~~~~~l~~Li~s~~~vfDv 312 (708)
T PF08326_consen 234 RLAELESRSYSKVALKAREILIQCQLPSYEERRNQMEHILRSLISVVESSYGEDFAKHR-EPSPEVLKELIDSPTTVFDV 312 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhhCCChhHHHHHHHHHHhcchhhhhhhccccccccc-cccHHHHHHHHcCCCcchhh
Confidence 9999999999999999999999999999999999999999 3 2 3455787665555 89999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhhcccccccccccceeeeecc---eEEEEEEecccc--c----------ccCCCCCCCC
Q 000092 1066 LVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCG---LIASWEFLEEHI--E----------RKNGPEDQTP 1130 (2267)
Q Consensus 1066 L~~~f~~~~~~~~~~alevyvrr~Y~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~--~----------~~~~~~~~~~ 1130 (2267)
|+.||+|+|++|+.+||||||||+|++|.|+ +++|+..+ ++++|+|.+|+. + +..+.+++++
T Consensus 313 L~~fF~h~d~~v~~aAlEvYVRRaYraY~l~---~i~~~~~~~~~~~~~w~F~L~~~~~~~~~~~~~~~~r~~s~s~~~~ 389 (708)
T PF08326_consen 313 LPSFFDHSDPWVARAALEVYVRRAYRAYSLK---SIQHHELDDGPPIVSWQFMLPSSHPSRFNSSPSSSSRFASVSDLSY 389 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHhcCCChHHHHHHHHHHHHHhccceeee---eEEEEEcCCCceEEEEEEECCCccccccCccccccccccCCChhhh
Confidence 9999999999999999999999999999999 89988755 889999988762 1 3456666666
Q ss_pred CCcccccccccceeEEEEccCcCcHHHHHHHHHhh-cccCCCCccccCCCCcCCCCcEEEEEEecccccccccCCCCCHH
Q 000092 1131 EQPLVEKHSERKWGAMVIIKSLQSFPDILSAALRE-TAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209 (2267)
Q Consensus 1131 ~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 1209 (2267)
..+. ....|+|+|+.|++++++.+.++++|+. +.... ..+..+...+++.||+||++++ ..+.. +|+
T Consensus 390 ~~~~---~~~~R~Gvmv~~~~l~~l~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~nVl~val~~------~~~~~-~d~ 457 (708)
T PF08326_consen 390 LIDS---SSSERTGVMVAFDSLEDLEEALPAALEEFPDADG--NTSTGSGSSSEPINVLNVALSD------SSGSD-DDE 457 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhh---cccccceEEEEeCcHHHHHHHHHHHHHhhccccc--ccccccCCCCCCCeEEEEEEec------CCCCc-CHH
Confidence 5543 2234999999999999999999999998 32110 0001112235789999999986 22332 677
Q ss_pred HHHHHHHHHHHHhhhcccccCcccCCeeEEEEEEecCCCCCCeeEEeccCCccCCCccccccccCCCCcchhhhhccccC
Q 000092 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPLSIYLELDKLKG 1289 (2267)
Q Consensus 1210 ~~~~~~~~~~~~~~~~~~~~~l~~~~vrrvt~~~~~~~~~~p~~ftfr~~~~~~~~~Ed~~~R~~~p~~a~~Lel~rl~n 1289 (2267)
++.++|++++++++. .|..+|||||||+++++.+.+|+|||||++ ++|.||++|||+||++||||||+||+|
T Consensus 458 e~~~~l~~~l~~~~~-----~L~~~~vrrVt~~v~~~~~~~P~~fTFr~~---~~~~Ed~~~R~ieP~la~~LEL~RL~n 529 (708)
T PF08326_consen 458 ELAEKLEAILKENKS-----ELRAAGVRRVTFIVARDEGQYPKYFTFRAS---DEYEEDRLIRHIEPALAFQLELWRLSN 529 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHH-----HHHhcCceEEEEEEccCCCCCceEEEeCCC---CCcchhhHhccCCchhHHHhhhhhhhC
Confidence 899999999999998 999999999999999866789999999964 469999999999999999999999999
Q ss_pred CCCceeeccCCCcceEEEeecCC--CC-ceeEEEEEeecCCCCCCCCcccccccCCccccccccccchHHHHHHHHHHHH
Q 000092 1290 YDNIQYTLSRDRQWHLYTVVDKP--LP-IRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366 (2267)
Q Consensus 1290 f~~~~~~p~~~~~~hly~~~~k~--~~-d~r~f~r~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~ld~le 1366 (2267)
|+ |+++||.|++||||+|++|+ ++ |+|||+|++||++++.+++.+. +| +++++||+|.+|||+||
T Consensus 530 f~-i~~~ps~~~~~HlY~a~~k~~~~~~d~R~F~RaiVR~~~~~~~~~~~---~~--------~~~e~er~l~~~Ld~Le 597 (708)
T PF08326_consen 530 FD-ITRLPSRNRQIHLYRAVAKKKQNPADRRFFARAIVRQGDLRRDESGA---EY--------LISEAERLLADALDALE 597 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-cEEecCCCCceEEEEEeccCCCCCCceEEEEEEEeecCccccccchh---hh--------hhhhHHHHHHHHHHHHH
Confidence 99 99999999999999999998 66 9999999999999999888777 77 88999999999999999
Q ss_pred HHHhcccccCCCCCccEEEEEEeccccccccCCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccceeEEEEEE
Q 000092 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKL 1446 (2267)
Q Consensus 1367 ~~~~~~~~~~~~~~~nhifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~rl~~l~v~~~e~~~ 1446 (2267)
++..++ ..+++||||||||| ||++.++| .++++++++|++|||+|||||||++||||+
T Consensus 598 ~a~~~~--~~~~~d~Nhifln~---~p~~~~~~-----------------~~le~~~~~~~~r~g~RL~rLrV~~vEir~ 655 (708)
T PF08326_consen 598 VAQSNP--RVKRTDCNHIFLNF---WPELELDP-----------------EDLEAAVRGFVERYGRRLWRLRVTQVEIRI 655 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhccc--ccccccCceEEEEE---ecccCCCH-----------------HHHHHHHHHHHHHHHHHHHhcCccEEEEEE
Confidence 998773 34588999999999 99999999 999999999999999999999999999995
Q ss_pred EEee-ccCCCCceEEEEeCCCCcEEEEEEEEEeecCCCceEEEEEee-cccccC
Q 000092 1447 WMAY-SGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVA-VRGLLH 1498 (2267)
Q Consensus 1447 ~~~~-~~~~~~~~R~~~~n~sG~~~~~~~Y~E~~~~~~~~~~~~~~g-~~g~~~ 1498 (2267)
+++. ..+...|+|++++|+|||++++++|+|++|++|+++ |+|+| ++||||
T Consensus 656 ~~~~~~~~~~~p~Rvvisn~sG~~~~v~~Y~E~~~~~g~~i-f~si~~~~G~~h 708 (708)
T PF08326_consen 656 RIRDPSTGAPIPVRVVISNPSGYVVKVEIYREVKDPKGEWI-FKSIGSKPGPLH 708 (708)
T ss_dssp ------------------------------------------------------
T ss_pred EeccCCCCCccceEEEEECCCCCeEEEEEEEEEECCCCCEE-EEECCCCCCCCC
Confidence 5552 222355999999999999999999999999997777 99999 599998
No 4
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-115 Score=1031.67 Aligned_cols=635 Identities=29% Similarity=0.442 Sum_probs=539.8
Q ss_pred EEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHc
Q 000092 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMT 130 (2267)
Q Consensus 51 VLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~ 130 (2267)
|||+|||++|+|+||+||+||++++ ++++|.|.++.|+++||++|++++.+...+|++.+.|+++|++.
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tV-----------AV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~t 69 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTV-----------AVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRT 69 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEE-----------EEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhc
Confidence 6999999999999999999988775 66779999999999999999999999999999999999999999
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 131 ~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
+++||||||||+|||.+|++.|+++||.|+||++.+++.+|||..+|++++++|||+.|.+.
T Consensus 70 gaqaihPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~------------------ 131 (670)
T KOG0238|consen 70 GAQAIHPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYH------------------ 131 (670)
T ss_pred CCceecCCccccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999654
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rhieVq 286 (2267)
+...|.+++.+.+++||||||||++.||||||+|++++++|+.+.|+.++.|+. .+.+|+|+|++++||+|||
T Consensus 132 ---g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQ 208 (670)
T KOG0238|consen 132 ---GEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQ 208 (670)
T ss_pred ---cccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEE
Confidence 227899999999999999999999999999999999999999999999988864 4689999999999999999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
+++|++||+++|++||||+||||||+||++|++.++++++.+|.++|+++++++||.|++||||++|+ .+.|||+|||+
T Consensus 209 v~gD~hGnav~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~-~~~FyFmEmNT 287 (670)
T KOG0238|consen 209 VFGDKHGNAVHLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KDNFYFMEMNT 287 (670)
T ss_pred EEecCCCcEEEecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcC-CCcEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 78899999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
|||+|||+|||+||+||+++||++|+|.||+. .|...+.+||+++|||
T Consensus 288 RLQVEHPvTEmItg~DLVewqiRvA~ge~lp~--------------------------------~q~ei~l~GhafE~Ri 335 (670)
T KOG0238|consen 288 RLQVEHPVTEMITGTDLVEWQIRVAAGEPLPL--------------------------------KQEEIPLNGHAFEARI 335 (670)
T ss_pred eeeecccchhhccchHHHHHHHHHhcCCCCCC--------------------------------CcceeeecceEEEEEE
Confidence 99999999999999999999999999999973 4556677899999999
Q ss_pred ccCCCCCCCCCCCCccccccccC-CCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEeccccc
Q 000092 447 TSEDPDDGFKPTSGKVQELSFKS-KPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRT 525 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~~~s-~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~t 525 (2267)
|||||..+|.|++|++..+.+|. +|+||++.+|.+|+.|+.+||||++|+++||.||++|+.+|..||+++.|+| +.|
T Consensus 336 yAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~~I~G-v~t 414 (670)
T KOG0238|consen 336 YAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNYVIRG-VPT 414 (670)
T ss_pred eecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHHHHHHHhhcEEec-Ccc
Confidence 99999999999999999999884 7899999999999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHhcCCcccccccccchhhhhhhhhhhccCC--CCc--hhHHHhhHHHHHHHhhhhhhhccccccccCCC---CC
Q 000092 526 NVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAER--PPW--YLSVVGGALYKASASSAAMVSDYIGYLEKGQI---PP 598 (2267)
Q Consensus 526 n~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~--~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~---~~ 598 (2267)
||+||++|+.+|+|..|+++|.||+++..+.+..+. |.. ..+.++.++.... ......|... .+++. +.
T Consensus 415 nI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~~~~~~~~~a~a~~l~~~~---~~~a~~f~~~-n~~~~~v~~~ 490 (670)
T KOG0238|consen 415 NIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESITPAEQLSQAAVASSLNAWA---SGRAYQFRLQ-NKDRASVFSS 490 (670)
T ss_pred chHHHHHHhcChhhhcCccccccchhcCccccCccccCcHHHHHHHHHHHHHHHHh---hchhhHHhhc-cCCccceecc
Confidence 999999999999999999999999999887765532 222 2233333332211 1112223211 12221 11
Q ss_pred Cccc----ccceeeeEeecCeEEEEEEEeecCceEEEEECCeEEE-EE--EEE-ecCCceEEEeCCceEEEEeeecccce
Q 000092 599 KHIS----LVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIE-AE--IHT-LRDGGLLMQLDGNSHVVYAEEEAAGT 670 (2267)
Q Consensus 599 ~~~~----~~~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~-V~--v~~-l~dg~~~v~~~G~s~~v~~~e~~~~~ 670 (2267)
...- .....+.+..+...+.+.|...+.++|.+.++|+.+. +. +.. ...+.+.+..+|..+...........
T Consensus 491 ~~~~r~n~s~~~~~~~~~~e~~v~v~V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 570 (670)
T KOG0238|consen 491 SPPFRFNCSLVVKITLKTGENPVHVAVRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDGEGNGYQGRVIILGDEI 570 (670)
T ss_pred CCceEEEEeeEEEEcccCCccceEEEEEECCCCeEEEEecCCceEeeccceecccccceEEEEeccCceEEEEEEeCCeE
Confidence 0000 0111222222334577888888888999999988843 32 211 22333444555544444443333334
Q ss_pred EEEEcCceeec--------------ccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEE
Q 000092 671 RLLIDGRTCLL--------------QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ 736 (2267)
Q Consensus 671 ~v~v~g~t~~~--------------~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~ 736 (2267)
.+...+....+ .++..++.+.|||||.|.+++|++||.|++||.+++|||||||+.++||.+|+|+
T Consensus 571 ~l~~~~~~~~ve~~~~k~l~~~~s~~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk 650 (670)
T KOG0238|consen 571 SLFSNEGVIKVEVLPPKYLSPQSSETKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVK 650 (670)
T ss_pred EEEecCcceeEecCChHhhhhhhhhhccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCcee
Confidence 44433322222 1345677899999999999999999999999999999999999999999999999
Q ss_pred Ee-eCCCCccCCCCEEEEEe
Q 000092 737 FK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 737 ~i-~~~G~~v~~G~~La~l~ 755 (2267)
.+ ++.|++|..|++|.+++
T Consensus 651 ~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 651 DVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred eEeeecCcccCCCceEEEeC
Confidence 99 99999999999999874
No 5
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1.8e-97 Score=907.73 Aligned_cols=446 Identities=34% Similarity=0.590 Sum_probs=414.3
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIV 124 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~Il 124 (2267)
..|+||||||||++|+|++|+|.++|+.| |+++..+| ..+.|...||+.|.++.+ .+.+.|+++|.|+
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~T---------VAIys~ED--~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII 73 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKT---------VAIYSEED--RLSLHRFKADESYLIGEGKGPVEAYLSIDEII 73 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceE---------EEEeeccc--cchhhhccccceeeecCCCCchHHhccHHHHH
Confidence 46899999999999999999999997666 56666555 788999999999999865 4457999999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
++|++.++|+|||||||+|||++|++.|.++||.|+||+++.|+.+|||..++..|.++|||+.|.+.
T Consensus 74 ~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~------------ 141 (1149)
T COG1038 74 RIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTD------------ 141 (1149)
T ss_pred HHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999664
Q ss_pred ccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEecccc
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQS 280 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~ 280 (2267)
+.+.+.+++.++++++|||+|||++.||||+|||+|.++++|.+++.++.+|+. ++.++||+|++++
T Consensus 142 ---------~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~p 212 (1149)
T COG1038 142 ---------GPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENP 212 (1149)
T ss_pred ---------CCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCc
Confidence 237889999999999999999999999999999999999999999999998864 4689999999999
Q ss_pred ceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 281 rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
+|+|||+++|.+||++||++||||+||||||++|.+|++.++++++.+|++.|+++++.+||.|++||||+++ .+++||
T Consensus 213 kHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd-~~~~fy 291 (1149)
T COG1038 213 KHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVD-EDGKFY 291 (1149)
T ss_pred ceeEEEEeecCCCCEEEEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEc-CCCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 467999
Q ss_pred EeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000092 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2267)
Q Consensus 361 fLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gh 440 (2267)
|||+|||+|+||.+||++||||++++|+++|.|..|+. | +..+. .|..+...||
T Consensus 292 FIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~~-~---------------------e~glp----~q~dI~~~G~ 345 (1149)
T COG1038 292 FIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGATLHT-P---------------------ELGLP----QQKDIRTHGY 345 (1149)
T ss_pred EEEecCceeeEEeeeeeeechhHHHHHHHHhccCccCC-c---------------------ccCCC----ccccccccce
Confidence 99999999999999999999999999999999998872 1 11111 4456788999
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000092 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2267)
Q Consensus 441 ai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~-~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2267)
||+||||.|||.++|.|..|+|..++-.++-|||.+. .--.|..|.+||||++-|+-+||.|.++|+++|.++|.|++|
T Consensus 346 AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrI 425 (1149)
T COG1038 346 AIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRI 425 (1149)
T ss_pred EEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999998888888999884 345788999999999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCCcccccccccchhhhh
Q 000092 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2267)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2267)
|| |+||++||.+++.||.|.+|+++|+|||.
T Consensus 426 rG-VkTNi~FL~~vl~h~~F~~g~y~T~FId~ 456 (1149)
T COG1038 426 RG-VKTNIPFLEAVLNHPDFRSGRYTTSFIDT 456 (1149)
T ss_pred cc-eecCcHHHHHHhcCcccccCcceeeeccC
Confidence 99 99999999999999999999999999995
No 6
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=2.4e-88 Score=810.37 Aligned_cols=440 Identities=35% Similarity=0.577 Sum_probs=409.1
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIVEMA 127 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~Il~iA 127 (2267)
+||||||||++|+|+.|+|.+++.++ |+++. ..+..+.|...||+.|.++.+ +....|+.++.|+++|
T Consensus 34 ~kvlVANRgEIaIRvFRa~tEL~~~t---------vAiYs--eqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~ia 102 (1176)
T KOG0369|consen 34 NKVLVANRGEIAIRVFRAATELSMRT---------VAIYS--EQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIA 102 (1176)
T ss_pred ceeEEecCCcchhHHHHHHhhhcceE---------EEEEe--ccchhhhhhhccccceecccCCCchhhhhhHHHHHHHH
Confidence 79999999999999999999997665 56665 555889999999999998754 4456899999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+++++|+|||||||+||+.+|+++|.++|+.|+||+++.+..+|||..+|.+|-++|||+.|...
T Consensus 103 k~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTp--------------- 167 (1176)
T KOG0369|consen 103 KKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTP--------------- 167 (1176)
T ss_pred HHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999654
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rhi 283 (2267)
+++++.+|+.+++++.|||+|+|+..||||+|||+|++.++++++|+++.+|+. ++.+|||+|++.+||+
T Consensus 168 ------gPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHI 241 (1176)
T KOG0369|consen 168 ------GPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHI 241 (1176)
T ss_pred ------CCcccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCccee
Confidence 458999999999999999999999999999999999999999999999888753 5689999999999999
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
|||+++|.+||++++++||||+||||||++|.+|++.+++++++.|...|+++++.+||..++|+||++| ..|++||||
T Consensus 242 EvQllgD~~GNvvHLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD-~~g~hYFIE 320 (1176)
T KOG0369|consen 242 EVQLLGDKHGNVVHLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVD-QKGRHYFIE 320 (1176)
T ss_pred EEEEecccCCCEEEEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEc-cCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 578999999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~ 443 (2267)
+|||+|+||.+||.+||+||+.+|+++|.|..|+.+ |. .|..+.++|.+|+
T Consensus 321 vN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~l-------gl----------------------~QdkI~trG~aIQ 371 (1176)
T KOG0369|consen 321 VNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDL-------GL----------------------TQDKITTRGFAIQ 371 (1176)
T ss_pred ecCceeeeeeeeeeeccchhhhhhhhhhcCCCcccc-------cc----------------------cccceeecceEEE
Confidence 999999999999999999999999999999998753 11 4567788999999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 444 aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~-~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
||+|.|||.++|.|.+|+|+-++--.+.|++.+. +--+|..|+++|||++-+|++.|.|.+-++++|.+||.+++|||
T Consensus 372 CRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRG- 450 (1176)
T KOG0369|consen 372 CRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRG- 450 (1176)
T ss_pred EEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhcc-
Confidence 9999999999999999999854444456677763 45578999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2267)
++|||+||.++|.+|.|.+|+++|.|||+
T Consensus 451 VKTNIpFllnvL~n~~Fl~g~~~T~FIDe 479 (1176)
T KOG0369|consen 451 VKTNIPFLLNVLTNPVFLEGTVDTTFIDE 479 (1176)
T ss_pred eecCcHHHHHHhcCcceeeeeeeeEEecC
Confidence 99999999999999999999999999996
No 7
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=3.3e-86 Score=845.19 Aligned_cols=483 Identities=34% Similarity=0.559 Sum_probs=452.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
||+||||+|+|++|+++|++||+||++++ ++ +++.+.++.++++||+++++|++.+.++|+|++.|+++
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V---------~v--~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~ 69 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTV---------AV--YSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDV 69 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEE---------EE--eccccccccchhhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 68999999999999999999999998875 34 44667899999999999999988888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|||||||++||+.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 70 a~~~~~daI~pg~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~------------- 136 (499)
T PRK08654 70 AKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEE------------- 136 (499)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998751
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
.+.+.+++.++++++||||||||+.||||+||++|++.+||.++++.+..++ ..+++|||+|+++++|
T Consensus 137 --------~v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ 208 (499)
T PRK08654 137 --------GIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRH 208 (499)
T ss_pred --------CCCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcE
Confidence 1578999999999999999999999999999999999999999999876432 3467999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++||+++|++|+++++++|||++||+|||+++++|++.++++++++|.+.|.++++++||.|++||||+++ +++||||
T Consensus 209 ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yfl 286 (499)
T PRK08654 209 IEIQILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFL 286 (499)
T ss_pred EEEEEEEcCCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEE
Confidence 99999999999999999999999999999999999988999999999999999999999999999999997 7899999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++|++||++||+||+++|+++|+|.|++. .+..+.++||+|
T Consensus 287 EiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~l~~--------------------------------~~~~~~~~g~ai 334 (499)
T PRK08654 287 EMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEELSF--------------------------------KQEDITIRGHAI 334 (499)
T ss_pred EEECCCCCCCceeehhhCCCHHHHHHHHhcCCCCCC--------------------------------cccccccceEEE
Confidence 999999999999999999999999999999999863 223456679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
+||||||||..+|.|++|+|+.+.+|++++|+++.++..|..++++|||++||||+||+||++|+++|.+||+++.|+|
T Consensus 335 ~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g- 413 (499)
T PRK08654 335 ECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVG- 413 (499)
T ss_pred EEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhcEEEC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhh--hhhhhc---c---CCCCchhHHHhhHHHHHHHhhhhhhhccccccccC
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSR--IAMRVR---A---ERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKG 594 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~--~~~~~~---~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g 594 (2267)
++||++||+.||++|+|++|+++|+|||++ |.++++ . ++|+ +++++|++.++++....+....|.+.+++|
T Consensus 414 ~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (499)
T PRK08654 414 VKTNIPFHKAVMENENFVRGNLHTHFIEEETTILEEMKRYALEEEEREK-TLSEKFFPGNKKVAAIAAAVNAYISSAKKD 492 (499)
T ss_pred ccCCHHHHHHHhCCHhhcCCCccchhhhcCHHHHHHHHHHhhhcccccc-hHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 877765 3 4555 889999999999999999999999999999
Q ss_pred CCC
Q 000092 595 QIP 597 (2267)
Q Consensus 595 ~~~ 597 (2267)
|-.
T Consensus 493 ~~~ 495 (499)
T PRK08654 493 NEE 495 (499)
T ss_pred ccc
Confidence 854
No 8
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=2.9e-86 Score=816.44 Aligned_cols=421 Identities=31% Similarity=0.466 Sum_probs=376.7
Q ss_pred eeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1587 IGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1587 ~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
.|+|+|..++ +||+|++++||+|+++||+|+.+.+|+.|++++|.++|+|+|||.+||||||| |++
T Consensus 79 dGvVtG~G~i------~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~--~~v------ 144 (526)
T COG4799 79 DGVVTGIGTI------NGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQ--EGV------ 144 (526)
T ss_pred CeeEEeeeee------CCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccccccc--cCc------
Confidence 6999999977 99999999999999999999999999999999999999999999999999999 433
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
+|++|+|.|+...++++..||||
T Consensus 145 ---------------------------------------------------------~~l~g~g~iF~~~a~~Sg~IPqI 167 (526)
T COG4799 145 ---------------------------------------------------------PSLAGYGRIFYRNARASGVIPQI 167 (526)
T ss_pred ---------------------------------------------------------cccccchHHHHHHHHhccCCCEE
Confidence 34455555555566666668999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCccccccc-cCceEEEecCcHHHHHHH
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMAT-NGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~-nGv~d~~v~dd~e~~~~i 1824 (2267)
|+|+|+|+|||||+++|+|++||+++ ++||||||++||+++|++| |.++|||+++|++ +|++|++++||+++++.+
T Consensus 168 svv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~V--~~e~LGGa~vh~~~sGva~~~a~dd~~Ai~~v 245 (526)
T COG4799 168 SVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEEV--SAEELGGAQVHARKSGVADLLAEDDEDAIELV 245 (526)
T ss_pred EEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHhhcCcEe--ehhhccchhhhcccccceeeeecCHHHHHHHH
Confidence 99999999999999999999999999 7899999999999999999 7779999999996 599999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceE
Q 000092 1825 LKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTV 1897 (2267)
Q Consensus 1825 ~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~v 1897 (2267)
|+||||||+++.+++|+.++.|+++++. +++|. ++||+|++|.+ |||.+||+|++++||+++
T Consensus 246 r~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~r-----------l~D~~~F~E~~~~~a~~i 314 (526)
T COG4799 246 RRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIAR-----------LVDDGEFLEFKAGYAKNI 314 (526)
T ss_pred HHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCCccccHHHHHHH-----------hcCCccHHHHHhhhCcce
Confidence 9999999999999999877777776654 56777 99999999998 799999999999999999
Q ss_pred EEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCC
Q 000092 1898 VTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSG 1977 (2267)
Q Consensus 1898 VtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~ 1977 (2267)
|||||||+|+|||||||+++ +.||+|++++|.|+||||++|++++||||+|+|||||++
T Consensus 315 V~GfaRi~G~pVGiIANqp~---------------------~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm~ 373 (526)
T COG4799 315 VTGFARIDGRPVGIIANQPR---------------------HLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMP 373 (526)
T ss_pred EEEEEEECCEEEEEEecCcc---------------------ccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCCC
Confidence 99999999999999999755 349999999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhhhhcch
Q 000092 1978 GQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2056 (2267)
Q Consensus 1978 G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~I~~r~ 2056 (2267)
|+++|++|++|+||++++|+++++||+|++|+ +++|||+|.+|++. +++++ +||||+|+++||||||||.|+||+
T Consensus 374 G~~~E~~giik~Gakl~~A~aeatVPkitvI~--rkayGga~~~M~~~~~~~~~--~~AwP~a~iaVMG~egAv~i~~~k 449 (526)
T COG4799 374 GTDQEYGGIIKHGAKLLYAVAEATVPKITVIT--RKAYGGAYYVMGGKALGPDF--NYAWPTAEIAVMGPEGAVSILYRK 449 (526)
T ss_pred ChhHHhChHHHhhhHHHhhHhhccCCeEEEEe--cccccceeeeecCccCCCce--eEecCcceeeecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999 67899999999987 78887 999999999999999999999996
Q ss_pred hhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2057 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2057 ~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
+ ++.|.+ ..++++.++ ++++.+|.+.+..|..+.+.|+||+||+|
T Consensus 450 ~--l~~~~~-------------------~~~~~~~~~--------------~~~~~eY~~~~~~p~~aa~r~~iD~vI~p 494 (526)
T COG4799 450 E--LAAAER-------------------PEEREALLR--------------KQLIAEYEEQFSNPYYAAERGYIDAVIDP 494 (526)
T ss_pred H--hhcccC-------------------chhHHHHHH--------------HHHHHHHHHhccchHHHHHhCCCCcccCH
Confidence 5 333322 111112222 34566777777789999999999999999
Q ss_pred cchHHHHHHHHHHHH
Q 000092 2137 DKSRSFFCRRLRRRV 2151 (2267)
Q Consensus 2137 ~~~R~~~~~~L~r~l 2151 (2267)
.+||..|..+|++-.
T Consensus 495 ~~tR~~L~~~l~~~~ 509 (526)
T COG4799 495 ADTRAVLGRALSALA 509 (526)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888764
No 9
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=1.4e-84 Score=804.68 Aligned_cols=442 Identities=38% Similarity=0.639 Sum_probs=419.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|++||||+|+|++|++++|+|++||++++ +++++.+..+.|+++||+++++++....++|+|++.|+++
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tv-----------av~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~ 69 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETV-----------AVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAA 69 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEE-----------EEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHH
Confidence 68999999999999999999999988874 4455777888999999999999987888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|+|||||||+|||+.|++.|++.|+.|+||++++++.++||+.+|++++++|||++||+.
T Consensus 70 a~~~gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~-------------- 135 (449)
T COG0439 70 AEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSD-------------- 135 (449)
T ss_pred HHhcCCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC---CC-cEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GS-PIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~---~~-~I~VEeyI~g~rh 282 (2267)
+.+.+.+++.+.+++|||||||||+.||||+|||+|++.+||.++|.+++++.. ++ .+++|||++++||
T Consensus 136 -------~~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rh 208 (449)
T COG0439 136 -------GAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRH 208 (449)
T ss_pred -------CCcCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCce
Confidence 125678999999999999999999999999999999999999999999998875 44 4999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++|+++|++|+++++++|||++||||||+++++|++.++++.+.+|.+.++++++++||.|++|+||+++. +++||||
T Consensus 209 ievqv~gD~~g~~i~l~eRdcsiqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfi 287 (449)
T COG0439 209 IEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFI 287 (449)
T ss_pred EEEEEEEcCcccEEEEEeccCCCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 6899999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|+|||+||+||+||++||+||+.+||++|+|.+++. .+.+...+||++
T Consensus 288 EmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~l~~--------------------------------~q~~~~~~g~ai 335 (449)
T COG0439 288 EMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEPLSL--------------------------------KQEDIKFRGHAI 335 (449)
T ss_pred EEecccccCccceehhhhhhHHHHHHHHHcCCCCCC--------------------------------CCCcccccceee
Confidence 999999999999999999999999999999988763 223344569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
+|||++|||..+|.|++|.++...+|++++||++.++..|..++++||||+||+|++|.+|++|+.+|.+||++++|+|
T Consensus 336 e~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G- 414 (449)
T COG0439 336 ECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDG- 414 (449)
T ss_pred eceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCcccCcchhhheeEEEEecCChHHHHHHHHHHHHheEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2267)
++||++|++.++++++|.+|+++|+||++++.
T Consensus 415 ~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~ 446 (449)
T COG0439 415 IKTNIPLLQEILRDPDFLAGDLDTHFLETHLE 446 (449)
T ss_pred ccCChHHHHHHhcChHhhcCCcchhhhhhccc
Confidence 99999999999999999999999999998754
No 10
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=6.1e-83 Score=864.39 Aligned_cols=443 Identities=35% Similarity=0.583 Sum_probs=410.8
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC---CCCCCccCHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG---TNNNNYANVQLIVEM 126 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~---~~~~~Y~dvd~Il~i 126 (2267)
||||||||++|++++|+|+++|++++ +++++.+..+.|.++||++|.+|.+ ....+|+|++.|+++
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tV-----------av~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~i 69 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTV-----------AIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRV 69 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHH
Confidence 69999999999999999999998885 4445667889999999999999876 345799999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++.+++++|||+|||+.
T Consensus 70 ak~~~iDaI~PGyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~-------------- 135 (1143)
T TIGR01235 70 AKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTD-------------- 135 (1143)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++||||||||+.||||+|+++|++.+||.++++.+.+++ .++++|||+|+++++|
T Consensus 136 -------~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~re 208 (1143)
T TIGR01235 136 -------GPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRH 208 (1143)
T ss_pred -------cCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeE
Confidence 12678999999999999999999999999999999999999999999887653 2468999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++||+++|++|+++++++|||++||+|||+++.+|++.++++++++|++.|.++++++||.|++||||++++ +|++|||
T Consensus 209 IeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg~~yfI 287 (1143)
T TIGR01235 209 IEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DGKFYFI 287 (1143)
T ss_pred EEEEEEEeCCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CCcEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 5789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++|++||+++|+|++++|+++|+|.+++.+ ++ | + ..|..+.++||||
T Consensus 288 EVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~L~~~-~~----~-------------------~--~~q~~~~~~g~ai 341 (1143)
T TIGR01235 288 EVNPRIQVEHTVTEEITGIDIVQAQIHIADGASLPTP-QL----G-------------------V--PNQEDIRTNGYAI 341 (1143)
T ss_pred EeecCCCcchhHHHHHhCcHHHHHHHHHHcCCCCCcc-cc----C-------------------C--CcccccCCCcEEE
Confidence 9999999999999999999999999999999998731 00 1 0 1345667889999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+||||+|||.++|.|++|+|+.+.+|++++||++.+ ..+|..|+++|||+++|||+||.||++|+++|.+||+++.|+|
T Consensus 342 ~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~i~g 421 (1143)
T TIGR01235 342 QCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIRG 421 (1143)
T ss_pred EEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcEEEC
Confidence 999999999999999999999999999999999987 5589999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
|+||++||+++|+||+|++|+++|+|||++
T Consensus 422 -v~tn~~~l~~~l~~~~f~~~~~~t~~~~~~ 451 (1143)
T TIGR01235 422 -VKTNIPFLENVLGHPKFLDGSYDTRFIDTT 451 (1143)
T ss_pred -ccCCHHHHHHHhcCHhhcCCCccchhhhcC
Confidence 999999999999999999999999999985
No 11
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.5e-80 Score=846.09 Aligned_cols=448 Identities=34% Similarity=0.572 Sum_probs=414.4
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000092 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~I 123 (2267)
++|||||||+|+|++|++++|+|+++|++++ +++++.+.++++..+||+++++|.+ .+.++|+|++.|
T Consensus 2 ~~~~kkvLianrGeiavri~raa~elGi~~V-----------av~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~I 70 (1146)
T PRK12999 2 MKKIKKVLVANRGEIAIRIFRAATELGIRTV-----------AIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEI 70 (1146)
T ss_pred CCcccEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHH
Confidence 4689999999999999999999999998875 4455777889999999999999876 345799999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+.
T Consensus 71 i~iAk~~~iDaI~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~----------- 139 (1146)
T PRK12999 71 IRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSE----------- 139 (1146)
T ss_pred HHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccc
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQ 279 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g 279 (2267)
..+.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+.+++. .+++++|+|+++
T Consensus 140 ----------~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g 209 (1146)
T PRK12999 140 ----------GPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN 209 (1146)
T ss_pred ----------cCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 126789999999999999999999999999999999999999999998876542 468999999999
Q ss_pred cceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~ 359 (2267)
++|++||+++|++|+++++++|+|++||+|||+++.+|+..++++++++|.+.|.++++++||.|++|+||++++ +++|
T Consensus 210 ~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~-dg~~ 288 (1146)
T PRK12999 210 PRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNF 288 (1146)
T ss_pred CeEEEEEEEEECCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCCE
Confidence 999999999999999999999999999999999999999889999999999999999999999999999999984 5689
Q ss_pred EEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000092 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2267)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~G 439 (2267)
||||||||+|++|+++|+++|+|++++|+++|+|.|++.++ + |. +.+..+.++|
T Consensus 289 yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G~~l~~~~-~----~~---------------------~~q~~~~~~g 342 (1146)
T PRK12999 289 YFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEGATLHDLE-I----GI---------------------PSQEDIRLRG 342 (1146)
T ss_pred EEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCCCCCCccc-c----cc---------------------ccccccccce
Confidence 99999999999999999999999999999999999987421 0 10 0234556789
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 440 hai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
|+|+||||+|||.++|.|.+|+|+.+..|++++|+++.++. +|..|+++|||+++|||+||+||++|+++|.+||++++
T Consensus 343 ~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~ 422 (1146)
T PRK12999 343 YAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR 422 (1146)
T ss_pred eEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcE
Confidence 99999999999999999999999999999999999998876 89999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
|+| ++||++||+++|++|+|++|+++|+|||++
T Consensus 423 i~g-v~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 455 (1146)
T PRK12999 423 IRG-VKTNIPFLENVLKHPDFRAGDYTTSFIDET 455 (1146)
T ss_pred Eec-ccCcHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 999 999999999999999999999999999983
No 12
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.3e-76 Score=756.59 Aligned_cols=462 Identities=32% Similarity=0.522 Sum_probs=421.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|++|++++++|+++|++++ +++.|.++.++++++||+++++|+.+. .+|.|.+.|+++
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v-----------~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~ 68 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSV-----------AIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNL 68 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEE-----------EEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHH
Confidence 68999999999999999999999998875 444577889999999999999987654 899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+|||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+|||+.
T Consensus 69 a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~-------------- 134 (472)
T PRK07178 69 AVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSE-------------- 134 (472)
T ss_pred HHHHCCCEEEeCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+..+. ...++|+|+|+++++|
T Consensus 135 -------~~~~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~e 207 (472)
T PRK07178 135 -------GNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKH 207 (472)
T ss_pred -------cCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeE
Confidence 12678999999999999999999999999999999999999999998876542 3457999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++||+++|++|+++++++|+|++|++|||+++.+|++.++++++++|.+.|.++++++||.|+++|||++++ +|++||+
T Consensus 208 iev~v~~d~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g~~y~i 286 (472)
T PRK07178 208 IEVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DGEVYFM 286 (472)
T ss_pred EEEEEEEECCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++|+++|+++|+|++++++++++|.|++. .+..+.++||+|
T Consensus 287 EiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~l~~--------------------------------~~~~~~~~g~ai 334 (472)
T PRK07178 287 EMNTRVQVEHTITEEITGIDIVREQIRIASGLPLSY--------------------------------KQEDIQHRGFAL 334 (472)
T ss_pred EEeCCcCCCccceeeeeCcCHHHHHHHHHCCCCCCC--------------------------------ccccCCcceEEE
Confidence 999999999999999999999999999999999863 123445679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||++|||..+|.|++|+|..+.+|++++||+++.+.+|..|+++|||++||||+||+||++|+++|.+||+++.|+|
T Consensus 335 ~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g- 413 (472)
T PRK07178 335 QFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQG- 413 (472)
T ss_pred EEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhhhhcc--CCCCchhHHHhhHHHHH
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRA--ERPPWYLSVVGGALYKA 576 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~--~~~~~~~~~~~~a~~~~ 576 (2267)
++||++||++||.+|+|++|+++|+|||++ .+.+.. ..+...++++++|+..+
T Consensus 414 ~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (472)
T PRK07178 414 VKTTIPYYQEILRNPEFRSGQFNTSFVESH-PELTNYSIKRKPEELAAAIAAAIAA 468 (472)
T ss_pred ccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhhhcCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 444322 23333444555555444
No 13
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=1.4e-75 Score=746.10 Aligned_cols=446 Identities=34% Similarity=0.557 Sum_probs=413.9
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHH
Q 000092 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il 124 (2267)
.++||||||+|+|++|++++++||++|++++ +++++.+.++++.++||+++++++.....+|.|.+.|+
T Consensus 2 ~~~~~~vLi~~~geia~~ii~aa~~lG~~~v-----------~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~ 70 (467)
T PRK12833 2 PSRIRKVLVANRGEIAVRIIRAARELGMRTV-----------AACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAIL 70 (467)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHcCCeEE-----------EEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHH
Confidence 3679999999999999999999999998875 44446678889999999999887767778999999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
++|+++++|+|+|||||++|++.+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 71 ~~a~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~------------ 138 (467)
T PRK12833 71 AAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSD------------ 138 (467)
T ss_pred HHHHHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~ 280 (2267)
..+.+.+++.++++++||||||||+.||||+|+++|++.+||.++|+.+.+++ ..+.+|||+|++++
T Consensus 139 ---------~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 139 ---------GVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred ---------cCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 12678999999999999999999999999999999999999999998876543 24579999999988
Q ss_pred ceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 281 rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
+|++|++++|++ +++++++|+|++||++||+++++|++.++++..++|.+.|.++++++||+|++||||++++++|++|
T Consensus 210 ~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~ 288 (467)
T PRK12833 210 RHIEVQILGDGE-RVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFY 288 (467)
T ss_pred EEEEEEEEeCCC-cEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEE
Confidence 999999999986 6889999999999999999999999889999999999999999999999999999999986568899
Q ss_pred EeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000092 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2267)
Q Consensus 361 fLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gh 440 (2267)
|||||||+|++|+++|+++|+|++++++++++|.|++. .+..+.++||
T Consensus 289 ~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~g~ 336 (467)
T PRK12833 289 FIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPLRF--------------------------------AQGDIALRGA 336 (467)
T ss_pred EEEEECCCCcchhhhHHHhCCCHHHHHHHHHCCCCCCC--------------------------------CccccCcceE
Confidence 99999999999999999999999999999999999862 1233456799
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000092 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2267)
Q Consensus 441 ai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2267)
++++||++|||..+|.|++|+|+.+.+|..|||++++.+..|..|+++|||++||||+||+||++|+++|.+||+++.|+
T Consensus 337 ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~i~ 416 (467)
T PRK12833 337 ALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRID 416 (467)
T ss_pred EEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEecceeCcCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcCCcccccccccchhhhhhhhhh
Q 000092 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR 556 (2267)
Q Consensus 521 G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~ 556 (2267)
| ++||++||++||++|+|++|+++|+|||+++++.
T Consensus 417 g-~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 451 (467)
T PRK12833 417 G-MKTTAPLHRALLADADVRAGRFHTNFLEAWLAEW 451 (467)
T ss_pred C-ccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhh
Confidence 9 8999999999999999999999999999976543
No 14
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=3e-75 Score=744.64 Aligned_cols=446 Identities=32% Similarity=0.524 Sum_probs=413.5
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|++|++++++||++|++++ +++.+.+.+++++++||++|++|+.+ ..+|.|.+.|+++
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v-----------~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~ 68 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSV-----------AIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEI 68 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEE-----------EEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHH
Confidence 68999999999999999999999999885 44446667899999999999998754 4889999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||||+++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 69 a~~~~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~------------- 135 (478)
T PRK08463 69 AKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEK------------- 135 (478)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999997650
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rh 282 (2267)
....+.+++.++++++||||||||+.|+||+||++|++.+||..+++.+..+ ...+.++||+|+++++|
T Consensus 136 -------~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~ 208 (478)
T PRK08463 136 -------LNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRH 208 (478)
T ss_pred -------cCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeE
Confidence 0135788999999999999999999999999999999999999999876543 34568999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++++++|++|+++++++|+|++|++|||+++.+|++.+++++.++|++.|.++++++||.|++|+||++++ ++++||+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~~~y~i 287 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNRFYFM 287 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6889999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++|++||++||+|++++++++++|.+++. .+..+.++||+|
T Consensus 288 EiN~R~~~~~~~te~~tGidlv~~~ir~a~G~~l~~--------------------------------~~~~~~~~g~ai 335 (478)
T PRK08463 288 EMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEILDL--------------------------------EQSDIKPRGFAI 335 (478)
T ss_pred EEECCcCCCcceeeHhhCCCHHHHHHHHHcCCCCCC--------------------------------ccccCCCceEEE
Confidence 999999999999999999999999999999998752 122345679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||+||||...|.|++|+|+.+..+..+++|+++.+..|..++++|||++||+|++|+||++|+++|.+||+++.|+|
T Consensus 336 ~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~~i~g- 414 (478)
T PRK08463 336 EARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDG- 414 (478)
T ss_pred EEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCcccccceeEEEEECCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhhhhc
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVR 558 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~ 558 (2267)
++||++||+.+|.+|+|++|+++|+|||+++++.+.
T Consensus 415 ~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~ 450 (478)
T PRK08463 415 IRTTIPFLIAITKTREFRRGYFDTSYIETHMQELLE 450 (478)
T ss_pred ccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhcc
Confidence 999999999999999999999999999998887764
No 15
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=1.1e-71 Score=708.27 Aligned_cols=441 Identities=35% Similarity=0.604 Sum_probs=410.7
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|+.|++++++||++|++++ +++.+.+.++++.++||+++.+++..+.++|.|++.|+++
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v-----------~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~ 69 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETV-----------AVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISA 69 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEE-----------EEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHH
Confidence 58999999999999999999999999985 4445666888999999999998776777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|+|+||||+++|++.++..+++.|+.|+||+++++..++||..+|++++++|||+|||+.
T Consensus 70 ~~~~~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~-------------- 135 (447)
T PRK05586 70 TVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSE-------------- 135 (447)
T ss_pred HHHcCCCEEEcCccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+||.++++.+..+.. .++++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~e 208 (447)
T PRK05586 136 -------GEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKH 208 (447)
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeE
Confidence 116788999999999999999999999999999999999999999987765432 357999999998899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++++++|.+|++++++.++|+.++++||+++.+|++.+++++.++|.+.|.++++++||.|+++|||++++ +|++||+
T Consensus 209 i~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~~~~i 287 (447)
T PRK05586 209 IEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFM 287 (447)
T ss_pred EEEEEEECCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||++++|+++++++|+|++++++++++|.|++. .+......||++
T Consensus 288 EvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~l~~--------------------------------~~~~~~~~g~a~ 335 (447)
T PRK05586 288 EMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLSI--------------------------------KQEDIKINGHSI 335 (447)
T ss_pred EEECCCCCCccceehhhCCCHHHHHHHHHcCCCCCC--------------------------------cccccCcCceEE
Confidence 999999999999999999999999999999998863 112334569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||++|+|...|.|++|.++.+.+|..++||+++.+..|..++++|||++|+||++|+|+++|+++|.+||+++.|+|
T Consensus 336 ~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~~~g- 414 (447)
T PRK05586 336 ECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEG- 414 (447)
T ss_pred EEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhcEEEC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
++||++||+.||.||+|++|+++|+|||+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 415 VNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred ccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 9999999999999999999999999999875
No 16
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=6.6e-73 Score=722.01 Aligned_cols=422 Identities=30% Similarity=0.436 Sum_probs=352.3
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCchhhhhhh
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGA--RIGVAEEVKAC 1663 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGA--Ri~~~e~~~~l 1663 (2267)
..|+|++.+++ +||+|+|+++|+||++||+|+.+++|+.++.++|.++|+|+|+|.+|||+ ||+ |++.++
T Consensus 44 ~~gvvtG~G~I------~G~~v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~--eg~~~l 115 (493)
T PF01039_consen 44 GDGVVTGIGKI------NGRPVVVIAQDFTVLGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGAFLRMQ--EGVESL 115 (493)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGG--GHHHHH
T ss_pred CCcEEEEEEee------CCeeEEEEEeccceecCCCCcccceeeehHHHHHHHcCCCcEEeccccccccccc--hhhhhh
Confidence 46899999877 99999999999999999999999999999999999999999999999999 777 777776
Q ss_pred ccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCc
Q 000092 1664 FEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKET 1743 (2267)
Q Consensus 1664 ~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~i 1743 (2267)
++++ .|..++++++..|
T Consensus 116 ~~~g---------------------------------------------------------------~i~~~~~~~~~~i 132 (493)
T PF01039_consen 116 MGMG---------------------------------------------------------------RIFRAIARLSGGI 132 (493)
T ss_dssp HHHH---------------------------------------------------------------HHHHHHHHHHTTS
T ss_pred hhhH---------------------------------------------------------------HHHHHHHHHhcCC
Confidence 4433 2223334444568
Q ss_pred eEEEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHH
Q 000092 1744 FTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGI 1821 (2267)
Q Consensus 1744 ptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~ 1821 (2267)
|+|++++|+|+|||||+++++|++||+++ +.|+|+||++|+.++|+++ +++++||+++|. +||++|++++||++++
T Consensus 133 P~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~vv~~~~Ge~~--~~~~lgG~~~h~~~sG~~d~v~~de~~a~ 210 (493)
T PF01039_consen 133 PQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGPRVVESATGEEV--DSEELGGADVHAAKSGVVDYVVDDEEDAL 210 (493)
T ss_dssp -EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTHHHHHHHHSSCT--SHHHHHBHHHHHHTSSSSSEEESSHHHHH
T ss_pred CeEEEEccccccchhhcccccCccccCccceEEEeccccccccccCccc--cchhhhhhhhhcccCCCceEEEechHHHH
Confidence 99999999999999999999999999999 9999999999999999888 889999999986 8999999999999999
Q ss_pred HHHHHHHhcCC---CCCCCCCCcCCCCCCCCCC---CccCCC---CCCChHHHhcccccCCCCcccccccCCCceecccc
Q 000092 1822 SAILKWLSYVP---PHIGGALPIISPLDPPDRP---VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG 1892 (2267)
Q Consensus 1822 ~~i~~~LsylP---~~~~~~~p~~~~~d~~~r~---~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~ 1892 (2267)
+.+++||+|+| +++..++|..++.||+++. ..++|. ++||+|++|++ ++|.+||+|++++
T Consensus 211 ~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~~~P~~~~~~yD~r~ii~~-----------i~D~~~f~E~~~~ 279 (493)
T PF01039_consen 211 AQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDSIIPDDRRRPYDMRDIIAR-----------IVDDGSFFELKPG 279 (493)
T ss_dssp HHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHGCS-SSTTS---HHHHHHH-----------HSGGGBEEEESTT
T ss_pred HHHHHhhcccccccccccCCCcccccCCCcccccccccccccccCCCCCcceeeEe-----------cccCCCceecccc
Confidence 99999999999 4444577888888988874 457887 89999999998 7999999999999
Q ss_pred ccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecC
Q 000092 1893 WARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANW 1972 (2267)
Q Consensus 1893 ~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~ 1972 (2267)
||+++|||+|||+|+|||||||+++. .+|+|++++++|++|||++|++|+||||+|+||
T Consensus 280 ~g~~~vtg~arl~G~pVGiian~~~~---------------------~~G~~~~~~a~K~arfi~lcd~~~iPlv~l~dt 338 (493)
T PF01039_consen 280 YGKNIVTGFARLGGRPVGIIANNPRQ---------------------RAGALDPDGARKAARFIRLCDAFNIPLVTLVDT 338 (493)
T ss_dssp SSTTEEEEEEEETTEEEEEEEE-TTC---------------------GGGEB-HHHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred ccCCeEEeeeeeCCcceEEEEecccc---------------------ccccCChHHHHHHHHHHHHHHhhCCceEEEeec
Confidence 99999999999999999999997542 378999999999999999999999999999999
Q ss_pred CCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhh
Q 000092 1973 RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIE 2051 (2267)
Q Consensus 1973 ~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~ 2051 (2267)
+||++|.++|+.|++++||++++++++++||+|++|+ ++++||+|++|++. +++|+ +||||+|++|||+||++|+
T Consensus 339 pGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~--~~~~Gga~~am~~~~~~~~~--~~Awp~a~~~vm~~e~a~~ 414 (493)
T PF01039_consen 339 PGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIV--RKAYGGAYYAMCGRGYGPDF--VFAWPTAEIGVMGPEGAAS 414 (493)
T ss_dssp CEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEE--EEEEHHHHHHTTGGGGTTSE--EEEETT-EEESS-HHHHHH
T ss_pred ccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEe--CCccCcchhhhcccccchhh--hhhhhcceeeecChhhhhe
Confidence 9999999999999999999999999999999999999 68899999999877 88888 8999999999999999999
Q ss_pred hhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcc
Q 000092 2052 IKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIK 2131 (2267)
Q Consensus 2052 I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id 2131 (2267)
|+|+++.....+.+ .+..+..++++++++ +...++.++++.|.||
T Consensus 415 i~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~---------------~~~~~~~~~a~~~~~D 459 (493)
T PF01039_consen 415 ILYRDELEAAEAEG--------------------ADPEAQRAEKIAEYE---------------DELSSPYRAASRGYVD 459 (493)
T ss_dssp HHTHHHHHHSCHCC--------------------HSHHHHHHHHHHHHH---------------HHHSSHHHHHHTTSSS
T ss_pred eeehhhhhhhhccc--------------------chhHHHHHHHHHHHH---------------HhcCCHHHHHhcCCCC
Confidence 99998843333222 011111333333333 3333578999999999
Q ss_pred cccCccchHHHHHHHHHHHH
Q 000092 2132 EVVDWDKSRSFFCRRLRRRV 2151 (2267)
Q Consensus 2132 ~ii~~~~~R~~~~~~L~r~l 2151 (2267)
+||+|++||++++.+|.-..
T Consensus 460 ~ii~p~~tR~~l~~~l~~~~ 479 (493)
T PF01039_consen 460 DIIDPAETRKVLIAALEMLW 479 (493)
T ss_dssp EESSGGGHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHHHH
Confidence 99999999999999988544
No 17
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=1.7e-71 Score=707.18 Aligned_cols=422 Identities=23% Similarity=0.265 Sum_probs=353.4
Q ss_pred eeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1587 IGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1587 ~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
+|||+|++++ +||+|+|++||+||++||+|+.+.+|+.|++++|.++++|+|+|.||+||||+.+++.+++.
T Consensus 117 dgVVtG~G~V------~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~-- 188 (569)
T PLN02820 117 GGIVTGIGPV------HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDR-- 188 (569)
T ss_pred CeEEEEEEEE------CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCcccccccchH--
Confidence 6899999977 99999999999999999999999999999999999999999999999999997555554431
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
.+++.+|.. +.+.|+. .||+|
T Consensus 189 ---------~~~g~if~~----------------------------------------~~~ls~~----------~VP~I 209 (569)
T PLN02820 189 ---------DHFGRIFYN----------------------------------------QARMSSA----------GIPQI 209 (569)
T ss_pred ---------hHHHHHHHH----------------------------------------HHHHhCC----------CCCEE
Confidence 122222211 0111111 27999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHHH
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~i 1824 (2267)
++|+|+|+|||||.+.++|++||+++ +.|+|+||++|+.++|+++ ++++|||+++|. .||++|++++||.+++..+
T Consensus 210 svv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~Ge~v--~~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~ 287 (569)
T PLN02820 210 ALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEEV--SAEDLGGADVHCKVSGVSDHFAQDELHALAIG 287 (569)
T ss_pred EEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcCccc--CHHHhCCHHHhcccccccccccCchHHHHHHH
Confidence 99999999999999999999999976 6799999999999999999 999999999999 6999999999999999999
Q ss_pred HHHHhcCCCCCCC---------CCCcCCCCCCCCCCCccCCC---CCCChHHHhcccccCCCCcccccccCCCceecccc
Q 000092 1825 LKWLSYVPPHIGG---------ALPIISPLDPPDRPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG 1892 (2267)
Q Consensus 1825 ~~~LsylP~~~~~---------~~p~~~~~d~~~r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~ 1892 (2267)
|+||||||.++.. .+|..++.++.++...++|. ++||+|++|+. |+|++||+|+++.
T Consensus 288 R~lls~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ivP~~~~~~yD~r~vi~~-----------ivD~~sf~E~~~~ 356 (569)
T PLN02820 288 RNIVKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPADHKQSFDVRSVIAR-----------IVDGSEFDEFKKN 356 (569)
T ss_pred HHHHHhcCcCCcccccccccCCCCCCcCcccChhhHhhccCCCCCCCCCHHHHHHH-----------hcCCceeEEeccc
Confidence 9999999987631 11122233334455678888 89999999998 7999999999999
Q ss_pred ccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecC
Q 000092 1893 WARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANW 1972 (2267)
Q Consensus 1893 ~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~ 1972 (2267)
||+++|||+|||+|+||||||| +|+|++++++|++|||++|++++||||+|+|+
T Consensus 357 ~g~~iVtG~aRi~G~~VgvvAn--------------------------~g~l~~~~a~Kaarfi~lc~~~~iPlv~l~D~ 410 (569)
T PLN02820 357 YGTTLVTGFARIYGQPVGIIGN--------------------------NGILFTESALKGAHFIELCAQRGIPLLFLQNI 410 (569)
T ss_pred CCCcEEEEEEEECCEEEEEEEE--------------------------CCccCHHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 9999999999999999999999 48999999999999999999999999999999
Q ss_pred CCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhc-cccCCccceeecccccEEEeeCccchhh
Q 000092 1973 RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD-SRINSDHIEMYADRTAKGNVLEPEGMIE 2051 (2267)
Q Consensus 1973 ~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~-~~~n~d~~~~~A~p~A~~gvl~pegav~ 2051 (2267)
+||++|.++|..|+++++++++.++++++||+|++|+ |+++||+|.+|+ +.+++|+ +||||+|++|||+||++|+
T Consensus 411 pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~--g~a~G~g~~aM~g~~~~~d~--~~awp~A~i~vmg~e~aa~ 486 (569)
T PLN02820 411 TGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIV--GGSFGAGNYGMCGRAYSPNF--LFMWPNARIGVMGGAQAAG 486 (569)
T ss_pred CCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEE--CCcchHHHHHhcCcCCCCCE--EEECCCCeEEecCHHHHHH
Confidence 9999999999999999999999999999999999999 666776666665 6699999 9999999999999999999
Q ss_pred hhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcc
Q 000092 2052 IKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIK 2131 (2267)
Q Consensus 2052 I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id 2131 (2267)
|.|+.+... ..+.+++..+++++++++++++ |.+.+.+|....+.|.||
T Consensus 487 il~~~e~~~----------------~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~p~~aa~~~~vD 535 (569)
T PLN02820 487 VLAQIEREN----------------KKRQGIQWSKEEEEAFKAKTVE---------------AYEREANPYYSTARLWDD 535 (569)
T ss_pred HHHHHHhhh----------------hhhccccCCccHHHHHHHHHHH---------------HHHHhCCHHHHHHcCCcC
Confidence 999876210 1111111122222333433322 222345678889999999
Q ss_pred cccCccchHHHHHHHHHH
Q 000092 2132 EVVDWDKSRSFFCRRLRR 2149 (2267)
Q Consensus 2132 ~ii~~~~~R~~~~~~L~r 2149 (2267)
+||+|++||+.|++.|+.
T Consensus 536 ~VIdP~dTR~~l~~~l~~ 553 (569)
T PLN02820 536 GVIDPADTRRVLGLCLSA 553 (569)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 999999999999999975
No 18
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=1.4e-71 Score=706.89 Aligned_cols=416 Identities=26% Similarity=0.399 Sum_probs=363.3
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
.+|+|++.+++ +||+|+|+++|+||++||+|+.+++|+.+++++|.++++|+|+|.+||||||+ |++.++++
T Consensus 69 ~dgvVtG~G~v------~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~--eg~~~l~~ 140 (512)
T TIGR01117 69 AEGVVTGYGTI------DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQ--EAVDALKG 140 (512)
T ss_pred CceEEEEEEEE------CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCcc--ccchhhhh
Confidence 37899999876 99999999999999999999999999999999999999999999999999998 77766532
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
++++|.. +.+.||. ||+
T Consensus 141 ------------~~~~~~~----------------------------------------~~~~s~~-----------iP~ 157 (512)
T TIGR01117 141 ------------YGDIFYR----------------------------------------NTIASGV-----------VPQ 157 (512)
T ss_pred ------------HHHHHHH----------------------------------------HHHHcCC-----------CcE
Confidence 2223210 0112222 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecCC-cceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLDQ-PIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~a-~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++++|+|+||+||.+++||++||++++ .|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++.
T Consensus 158 Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~v--~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~ 235 (512)
T TIGR01117 158 ISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEEV--TAEQLGGAMAHNSVSGVAHFIAEDDDDCIML 235 (512)
T ss_pred EEEEecCCCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCccc--chhhcchHHHhccccceeEEecCChHHHHHH
Confidence 9999999999999999999999999985 799999999999999999 999999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccce
Q 000092 1824 ILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1896 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~ 1896 (2267)
+|+||||||+++.+.+|..++.|++.+. ..++|. ++||+|++|+. |+|++||+|+...|+++
T Consensus 236 ~r~~ls~lp~~~~~~~p~~~~~~~~~~~~~~l~~~iP~~~~~~~d~r~~i~~-----------l~D~~sf~El~~~~g~~ 304 (512)
T TIGR01117 236 IRRLLSFLPSNNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPYDMRDVITA-----------IVDNGDYLEVQPYYAPN 304 (512)
T ss_pred HHHHHHhCCcCCCCCCCCCCCCCCccccchhhhhhCCCCCCCCCCHHHHHHH-----------hCCCCceEEeeccCCCc
Confidence 9999999999988888866665665543 346887 89999999997 89999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCC
Q 000092 1897 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 1976 (2267)
Q Consensus 1897 vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~ 1976 (2267)
+|||+|||+|+||||||+|+++. ||+|++++++|++||+++|+++++|||+|+||+||+
T Consensus 305 vVtG~gri~G~~V~vvAnd~~~~---------------------~G~~~~~~~~K~~r~i~~a~~~~lPlV~lvDs~G~~ 363 (512)
T TIGR01117 305 IITCFARINGQSVGIIANQPKVM---------------------AGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFL 363 (512)
T ss_pred EEEEEEEECCEEEEEEEeccccc---------------------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCcCcc
Confidence 99999999999999999976543 899999999999999999999999999999999999
Q ss_pred CchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhhhhcc
Q 000092 1977 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFR 2055 (2267)
Q Consensus 1977 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~I~~r 2055 (2267)
+|..+|+.|+++++++++++++++++|+|++|+ |+++||+|.++++. +++|+ +||||+|+++||+||++++|+||
T Consensus 364 ~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~--g~~~Gga~~am~~~~~~~d~--~~a~p~a~~~v~~pe~a~~i~~~ 439 (512)
T TIGR01117 364 PGVNQEYGGIIRHGAKVLYAYSEATVPKVTIIT--RKAYGGAYLAMCSKHLGADQ--VYAWPTAEIAVMGPAGAANIIFR 439 (512)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCCchHHHHHhccccCCCCE--EEEcCCCeEeecCHHHHHHHHhh
Confidence 999999999999999999999999999999998 77799999999754 89999 99999999999999999999998
Q ss_pred hhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccC
Q 000092 2056 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135 (2267)
Q Consensus 2056 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~ 2135 (2267)
++. ++ ..+++ ++.+++ ..+|.+...+|.+++++|+||+||+
T Consensus 440 ~~l-------------------~~---~~~~~--~~~~~~---------------~~~~~~~~~~~~~~a~~g~vD~VI~ 480 (512)
T TIGR01117 440 KDI-------------------KE---AKDPA--ATRKQK---------------IAEYREEFANPYKAAARGYVDDVIE 480 (512)
T ss_pred hhc-------------------cc---ccCHH--HHHHHH---------------HHHHHHhhcCHHHHHhcCCCCeeEC
Confidence 761 10 00111 111112 2234444567889999999999999
Q ss_pred ccchHHHHHHHHHH
Q 000092 2136 WDKSRSFFCRRLRR 2149 (2267)
Q Consensus 2136 ~~~~R~~~~~~L~r 2149 (2267)
|++||++|+..|+.
T Consensus 481 P~~tR~~l~~~l~~ 494 (512)
T TIGR01117 481 PKQTRPKIVNALAM 494 (512)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999975
No 19
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=3.4e-70 Score=695.06 Aligned_cols=442 Identities=34% Similarity=0.588 Sum_probs=411.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|++|+++++++|++|++|+ +++.+.+.+++++++||+++.+++..+.++|.|++.|+++
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv-----------~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~ 69 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTV-----------AVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISA 69 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEE-----------EEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHH
Confidence 68999999999999999999999999986 4444666889999999999999777777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||+|+.+|++.++..|++.|+.|+||++++++.++||..++++++++|||+|||+.
T Consensus 70 a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~-------------- 135 (449)
T TIGR00514 70 AEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSD-------------- 135 (449)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+||.++++.+..+ ....+++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e 208 (449)
T TIGR00514 136 -------GLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRH 208 (449)
T ss_pred -------cCcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeE
Confidence 1167889999999999999999999999999999999999999999876543 23467999999999899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++++++|.+|+++.++.+||+++++++|+++.+|++.+++++.++|++.+.++++++||+|++||||++++ +|++|||
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~~~vi 287 (449)
T TIGR00514 209 VEIQVLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGEFYFM 287 (449)
T ss_pred EEEEEEEcCCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999998889999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||++++|++++.++|+|++++++++++|.|++. .+..+..+||++
T Consensus 288 EiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (449)
T TIGR00514 288 EMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPLSL--------------------------------KQEDVVVRGHAI 335 (449)
T ss_pred EEECCCCCCcceeehhcCCcHHHHHHHHHCCCCCCC--------------------------------ccccCCCceEEE
Confidence 999999999999999999999999999999999863 112334569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||++|||...|.|++|.+..+.+++.|+|++++.+.+|..+++++||++||||++|+||+||++++.+||++++|+|
T Consensus 336 ~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g- 414 (449)
T TIGR00514 336 ECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDG- 414 (449)
T ss_pred EEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCCEeCccccccceEEEEEcCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2267)
++||++||++||.+++|.+|+++|+|||++++
T Consensus 415 ~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 415 IKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred ccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 99999999999999999999999999999765
No 20
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=2.1e-68 Score=678.25 Aligned_cols=440 Identities=34% Similarity=0.578 Sum_probs=406.5
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
+.||||||+|+|++|+++|++||++|++|+ +++++.+.+++++++||+++.+|++.+.++|.|.+.|++
T Consensus 2 ~~~k~ili~~~g~~~~~~~~~~~~~G~~~v-----------~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~ 70 (445)
T PRK08462 2 KEIKRILIANRGEIALRAIRTIQEMGKEAI-----------AIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIIS 70 (445)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEE-----------EEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHH
Confidence 458999999999999999999999999985 444566788999999999999988777889999999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|+++++|+|+||+|+++|+..+++.|++.|+.|+||+++++..++||..++++++++|||+|||..
T Consensus 71 ~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~------------- 137 (445)
T PRK08462 71 AAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSD------------- 137 (445)
T ss_pred HHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSR 281 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~r 281 (2267)
..+.+.+++.++++++|||+||||+.|+||+|+++|+|.+||.+++..+..+ ...+++++|+|+++++
T Consensus 138 --------~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~ 209 (445)
T PRK08462 138 --------GALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPR 209 (445)
T ss_pred --------cccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCe
Confidence 1267889999999999999999999999999999999999999999876543 2345799999999889
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|+++++++|.+|++++++.++|+++++|+|.++++|+..++++..++|.+.+.++++++||.|++++||++++ ++++||
T Consensus 210 e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~-~g~~~v 288 (445)
T PRK08462 210 HIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDS-NLDFYF 288 (445)
T ss_pred EEEEEEEECCCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC-CCCEEE
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999984 568999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
+|||||++++|+++++++|+|++++++++++|.+++.. ....+.||+
T Consensus 289 iEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~l~~~---------------------------------~~~~~~~~a 335 (445)
T PRK08462 289 MEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEELPSQ---------------------------------ESIKLKGHA 335 (445)
T ss_pred EEEECCcCcCcceehhhhCCCHHHHHHHHHCCCCcccc---------------------------------cccCCceeE
Confidence 99999999999999999999999999999999987621 122356999
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+.+|+++|+|. .|.|.+|.+..+.++...+++++..+..|..++.+|||++|++|++|+|+++|+++|.+||+++.|+|
T Consensus 336 ~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g 414 (445)
T PRK08462 336 IECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEG 414 (445)
T ss_pred EEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEccCcCCCCEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhcEEEC
Confidence 99999999984 59999999999888888889999989999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
++||++||+++|.+|+|++|+++|+|||+++
T Consensus 415 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 415 -IKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred -ccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 9999999999999999999999999999863
No 21
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=6.3e-68 Score=675.14 Aligned_cols=443 Identities=35% Similarity=0.611 Sum_probs=410.7
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|+.|+++++++|++||+++ +++.+.+.++++.++||+++.+++..+.++|.|.+.|+++
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv-----------~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~ 69 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTV-----------AVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISA 69 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEE-----------EEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHH
Confidence 68999999999999999999999999885 4444666788999999999988666777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||+|+.+|++.++..|++.|+.|+||+++++..++||..++++++++|||+|||+.
T Consensus 70 a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~-------------- 135 (451)
T PRK08591 70 AEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSD-------------- 135 (451)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999998999999999999999999999999999999999999999999853
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
..+++.+++.++++++|||||+||+.|+||+|+++|+|.+||.++++.+..+. ..+.++||+|+++++|
T Consensus 136 -------~~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e 208 (451)
T PRK08591 136 -------GPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRH 208 (451)
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcE
Confidence 11678899999999999999999999999999999999999999999876542 2457999999998899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++++++|++|++++++.++|+.+++++++++.+|++.++++..++|.+.|.++++++||.|++++||++++ +|++||+
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g~~~vi 287 (451)
T PRK08591 209 IEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGEFYFI 287 (451)
T ss_pred EEEEEEEcCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999985 7889999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|+|||++++|++++.++|+|++++++++++|.|++. .+..+.++||++
T Consensus 288 EINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (451)
T PRK08591 288 EMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLSI--------------------------------KQEDIVFRGHAI 335 (451)
T ss_pred EEECCCCccchhhhhhhCCCHHHHHHHHHCCCCCCC--------------------------------cccccCcCceEE
Confidence 999999999999999999999999999999998863 112334579999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||++|+|...|.|++|.+..+.+|+.+++++++.+..|..++.++||++|+||++|+|+++|++++.++|++++|+|
T Consensus 336 ~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~i~g- 414 (451)
T PRK08591 336 ECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDG- 414 (451)
T ss_pred EEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCEEEC-
Confidence 9999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2267)
++||++||++||.+|+|++|+++|+|||++++.
T Consensus 415 ~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~ 447 (451)
T PRK08591 415 IKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLAL 447 (451)
T ss_pred CCCCHHHHHHHhcCHhhhCCCcccHHHHhhhhc
Confidence 999999999999999999999999999998764
No 22
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=9.3e-68 Score=621.45 Aligned_cols=416 Identities=26% Similarity=0.367 Sum_probs=360.5
Q ss_pred CceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhc
Q 000092 1585 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACF 1664 (2267)
Q Consensus 1585 n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~ 1664 (2267)
|..|+|.++..+ +||.|++++||+|+++||+.+.+..|+.|+++.|...++|+|||.||||||++ +.+.++-
T Consensus 98 ps~sIvtg~g~i------~gr~~~vianDfTv~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DSgga~l~--~~~es~~ 169 (536)
T KOG0540|consen 98 PSGSIVTGRGRI------NGRKCFVIANDFTVKGGSYYPITVKKHLRAQEIADNNRLPCIYLVDSGGARLP--RQAESFA 169 (536)
T ss_pred CCCceEeccccc------cceEEEEEccCchhcccccchhhHHHHhhHHHHHhhcCCCceeEecCccccCc--chhhhcC
Confidence 447899999865 99999999999999999999999999999999999999999999999999999 5555440
Q ss_pred cccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCce
Q 000092 1665 EIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1665 ~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ip 1744 (2267)
...-|+|+|++. |...|+. ||
T Consensus 170 ---------d~~~~~~If~n~---------------------------------------n~mss~~-----------ip 190 (536)
T KOG0540|consen 170 ---------DSYHFGRIFYNQ---------------------------------------NVMSSGN-----------IP 190 (536)
T ss_pred ---------Chhhhheeeeec---------------------------------------ceeccCC-----------CC
Confidence 012377887653 2222332 69
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHH
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGIS 1822 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~ 1822 (2267)
+|++|+|+|++||||.+++.|.+||+++ +.||++||+.+++++|++| |.++|||++.|+ .+||+|..+.||..++.
T Consensus 191 qis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVka~tnEev--sqedlgga~~hc~~sGv~~~~~~~dv~al~ 268 (536)
T KOG0540|consen 191 QISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVKAATNEEV--SQEDLGGADLHCTTSGVADKAAKNDVHALC 268 (536)
T ss_pred ceeEEEecccCCceecccccceeEEecCcceEEecCCchhhhhcccee--ehhhcCCcceeeeeccchhhhhhccHHHHH
Confidence 9999999999999999999999999998 5899999999999999999 999999999998 69999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccc
Q 000092 1823 AILKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWAR 1895 (2267)
Q Consensus 1823 ~i~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~ 1895 (2267)
..|..++|+|.......+...+.||+++++ .++|. ++||+|++|++ ++|.+.|+|++++|++
T Consensus 269 ~~r~~~~~l~~~~~~~a~~p~~~~p~d~~~~eld~Iv~~~~~~~yd~r~vi~~-----------iVD~~~f~E~~~~y~~ 337 (536)
T KOG0540|consen 269 LLRLKVSNLPLSEIDLAIDPGTWDPPDYDAPELDGIVPLNLTKAYDVREVIAR-----------IVDGSRFFEFKPGYGD 337 (536)
T ss_pred HHHHHHccCCcccccccCCcccCCcccccchhhccccccccccccchHhHHHh-----------hcccchhhhhcccccc
Confidence 999999999986555555455567777654 56787 99999999998 7999999999999999
Q ss_pred eEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCC
Q 000092 1896 TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF 1975 (2267)
Q Consensus 1896 ~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf 1975 (2267)
++|||||||+|+||||++|++++. ||+++.+++.|.+|||++|++++||||+|+|.+||
T Consensus 338 tlvtGfarlnG~tVgIvgnn~kf~---------------------~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~Gf 396 (536)
T KOG0540|consen 338 TLVTGFARLNGRTVGIVGNNPKFA---------------------GGVLFSESAVKGARFIELCDQRNIPLIFLQNITGF 396 (536)
T ss_pred ceeeeeeeECCEEEEEeccCchhc---------------------ccccchhhhhhhHHHHHHHHhcCCcEEEEEccCCc
Confidence 999999999999999999987765 99999999999999999999999999999999999
Q ss_pred CCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcc
Q 000092 1976 SGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFR 2055 (2267)
Q Consensus 1976 ~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r 2055 (2267)
++|...|..||.|+||+++++.++++||+|++|+ |..+||+|.+++..+.+|+ +||||+|+++|||.++||+|.|+
T Consensus 397 m~g~~~e~~gIaK~gAklv~a~a~akvpkITiit--~~syGG~y~m~sr~~~gd~--~yawP~A~IavmG~~~a~~Vi~q 472 (536)
T KOG0540|consen 397 MVGRAAEAGGIAKHGAKLVYAVACAKVPKITIIT--GGSYGGNYAMCSRGYSGDI--NYAWPNARIAVMGGKQAANVIFQ 472 (536)
T ss_pred cccchhhhhchhhhhhhhhhhhhhccCceEEEEe--cCccCCcccccccccCCce--eEEcccceeeeccccchhhhhhh
Confidence 9999999999999999999999999999999999 7789999997777799999 99999999999999999999876
Q ss_pred hhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccC
Q 000092 2056 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135 (2267)
Q Consensus 2056 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~ 2135 (2267)
-.. ++..+++++ +.+.+..|+-..++|+.|+||+
T Consensus 473 ~~~----------------------------e~a~~~~~~------------------~~E~f~npy~a~~Rg~~D~II~ 506 (536)
T KOG0540|consen 473 ITL----------------------------EKAVALKAP------------------YIEKFGNPYYAAARGWDDGIID 506 (536)
T ss_pred hhh----------------------------hhhhhhcch------------------HHHHhcCccHHHHhhccccccC
Confidence 530 011112222 1122234555667888899999
Q ss_pred ccchHHHHHHHHHHHH
Q 000092 2136 WDKSRSFFCRRLRRRV 2151 (2267)
Q Consensus 2136 ~~~~R~~~~~~L~r~l 2151 (2267)
|.+||..|...|.-.+
T Consensus 507 p~~tR~vl~~~l~~~~ 522 (536)
T KOG0540|consen 507 PSDTRKVLGLDLQAAA 522 (536)
T ss_pred hhHhhHHHHHHHHHHh
Confidence 9999999998877554
No 23
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=1.8e-65 Score=702.10 Aligned_cols=439 Identities=33% Similarity=0.559 Sum_probs=406.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
||||||+|+|++|+++|+++|++|++++ +++.|.++.++++++||+++.+|++...++|.|.+.|+++|
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v-----------~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a 69 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSV-----------AVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAA 69 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEE-----------EEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHH
Confidence 6899999999999999999999998875 44457778899999999999998888888999999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+++++|+|+||+|+++|+..+++.|++.|+.|+||++++++.++||..+|++++++|||++||+.
T Consensus 70 ~~~~idaIiPG~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~--------------- 134 (1201)
T TIGR02712 70 KKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTG--------------- 134 (1201)
T ss_pred HHHCCCEEEeCCcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhi 283 (2267)
.+++.+++.++++++||||||||..|+||+||++|++.+|+.++++.+.+.. .+.++|||+|+++++|+
T Consensus 135 -------lv~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~ev 207 (1201)
T TIGR02712 135 -------LLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHV 207 (1201)
T ss_pred -------ecCCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEE
Confidence 1678999999999999999999999999999999999999999999876532 24579999999988999
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
+|++++|++|++++++.|||++||+++|+++++|++.+++++.++|.+.|.++++++||+|+++|||+++++++++||||
T Consensus 208 eV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lE 287 (1201)
T TIGR02712 208 EVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLE 287 (1201)
T ss_pred EEEEEECCCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999999889999999999999999999999999999999986568899999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~ 443 (2267)
+|||+|++|+++++++|+|+++++++++.|.+++.- ...+ . ..+.||+++
T Consensus 288 VNpRlq~~~~lte~~tGvDlve~~ir~a~G~~~~~~------------------------~~~~-----~-~~~~g~ai~ 337 (1201)
T TIGR02712 288 VNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELPDFA------------------------SLNI-----S-LTPRGAAIE 337 (1201)
T ss_pred EECCcCcchhhHHHHhCCCHHHHHHHHHcCCCCCcc------------------------cccc-----c-cccceEEEE
Confidence 999999999999999999999999999999987520 0000 0 135799999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEeccc
Q 000092 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523 (2267)
Q Consensus 444 aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v 523 (2267)
+|+++|||..+|.|++|.++.+.+++ +++++..+.+|+.|+++||+++|+||++|+||++|+++|.+||+++.|+| +
T Consensus 338 ~riyae~p~~~~~p~~G~l~~v~~p~--~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~i~G-~ 414 (1201)
T TIGR02712 338 ARVYAENPAKNFQPSPGLLTDVQFPD--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYG-I 414 (1201)
T ss_pred EEEeccCcccCcCCCCceeeEEECCC--eEEEeceecCCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceEEcC-c
Confidence 99999999999999999999888876 48888899999999999999999999999999999999999999999999 9
Q ss_pred ccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 524 RTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 524 ~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
.||++||++||.+++|++|+++|+|||+.
T Consensus 415 ~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 415 ETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred CcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 99999999999999999999999999984
No 24
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=6.9e-59 Score=592.10 Aligned_cols=444 Identities=35% Similarity=0.575 Sum_probs=401.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|+|||||+|+|+.|++++++++++||+++ ++.++.+..+.++++||+++.+|+.....+|.|.+.|+++
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v-----------~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~ 69 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTV-----------AIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEI 69 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEE-----------EEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999986 3444566788899999999999876667899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||+|+.+|++.++..+++.|+.++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~id~I~p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~-------------- 135 (450)
T PRK06111 70 AKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGIT-------------- 135 (450)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcC--------------
Confidence 999999999999999999988889999999999999999999999999999999999999999732
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHh----hCCCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG----EVPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~----e~~~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.. .....+++||+|++|++|
T Consensus 136 -------~~~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e 208 (450)
T PRK06111 136 -------TNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRH 208 (450)
T ss_pred -------cCcCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcE
Confidence 015788999999999999999999999999999999999999999987643 233458999999999899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++++++++.+|+++.++.++|+++++|+++++.+|++.+++++.+++++.+.++++++||.|++++||++++ +|++||+
T Consensus 209 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~~~vi 287 (450)
T PRK06111 209 IEIQLLADTHGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFL 287 (450)
T ss_pred EEEEEEEcCCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999998888899999999999999999999999999999983 5569999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|+|||+++++++++.++|+|++++++++++|.|++. .+......++++
T Consensus 288 EiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (450)
T PRK06111 288 EMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLSF--------------------------------TQDDIKRSGHAI 335 (450)
T ss_pred EEECCcCCcchhhHHHhCcCHHHHHHHHhcCCCCCC--------------------------------ccccCCcCceEE
Confidence 999999999999999999999999999999998752 111223458899
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
..+++++++. .+.|..|.+..++++..+++++++.+..|+.++.++++++|+|+++|+|+++|++++..+++.++|+|
T Consensus 336 ~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~~g- 413 (450)
T PRK06111 336 EVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEG- 413 (450)
T ss_pred EEEEecCCCC-CcccCCCeeCeEecCCCCCEEEEecccCCCEeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEEeC-
Confidence 9999998874 57899999988877777789999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRV 557 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~ 557 (2267)
++||+++|+.||++|+|..|.++|+|||.++.++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (450)
T PRK06111 414 IKTNIPLLLQVLEDPVFKAGGYTTGFLTKQLVKKS 448 (450)
T ss_pred ccCCHHHHHHHhcChhhcCCcccchHHhhhhhhhc
Confidence 99999999999999999999999999999876653
No 25
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=3.9e-40 Score=378.47 Aligned_cols=205 Identities=43% Similarity=0.703 Sum_probs=184.2
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||..++++++++|||++||+. ..+++.+++.++++++||||||||+.|+||+|+++|+|
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~---------------------~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~ 59 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGST---------------------VPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHN 59 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBES---------------------SSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESS
T ss_pred CHHHHHHHHHHCCCCcCCCCC---------------------CCCCCHHHHHHHHHhcCCceEEeecccccccccccccc
Confidence 899999999999999999876 12589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHH
Q 000092 252 DDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK 327 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~ 327 (2267)
.++|.++++.++.+++ ..+++||+|+++++|++||+++|++|++++++.|||+.|+|+||.++++|++.++++.++
T Consensus 60 ~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~ 139 (211)
T PF02786_consen 60 EEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQ 139 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHH
T ss_pred hhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHH
Confidence 9999999999998876 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 328 eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+|++.|.++++++||+|++||||++++++++|||||+|||+|++||++|++||+||+++|+++|+|.+|.
T Consensus 140 ~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 140 KLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred HHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999977899999999999999999999999999999999999999986
No 26
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=1.5e-37 Score=388.22 Aligned_cols=373 Identities=17% Similarity=0.182 Sum_probs=292.8
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||||+|+|..++.++++++++||+++ ++ |.+++++..++||+++.++ |.|.+.|.++|++
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~-----------~~--d~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~ 60 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSYVIN-------MLDGDALRAVIER 60 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchhhhCceEEEcC-------CCCHHHHHHHHHH
Confidence 69999999999999999999999986 55 5567888889999998873 5788999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
+++|+|+|+.+..+.. ....+++.|+. +.|+++++..+.||..+++++ +++|||+|+|..
T Consensus 61 ~~id~v~~~~e~v~~~--~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~---------------- 121 (380)
T TIGR01142 61 EKPDYIVPEIEAIATD--ALFELEKEGYF-VVPNARATKLTMNREGIRRLAAEELGLPTSRYMF---------------- 121 (380)
T ss_pred hCCCEEEeccCccCHH--HHHHHHhcCCe-eCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceE----------------
Confidence 9999999986654322 33566778864 468999999999999999985 899999999876
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--~~~I~VEeyI~g~rhieVq 286 (2267)
+++.+++.++++++|||+|+||..|+||+|+++|++.+||..+++.+..... .++++||+|+++..|++|.
T Consensus 122 -------~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~ 194 (380)
T TIGR01142 122 -------ADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLL 194 (380)
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEE
Confidence 7788999888999999999999999999999999999999999998764322 4579999999987899999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
++.+.+|++...... ...+..+.......|+. ++++..+++.+.+.++++++|+.|++++||+++ ++++||+|+||
T Consensus 195 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~--~~~~~viEinp 270 (380)
T TIGR01142 195 TVRHVDGNTTFCAPI-GHRQIDGDYHESWQPQE-MSEKALEEAQRIAKRITDALGGYGLFGVELFVK--GDEVIFSEVSP 270 (380)
T ss_pred EEEcCCCCEEEecCc-ceEEeCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE--CCcEEEEEeec
Confidence 888777775442211 12222222222345765 889999999999999999999999999999998 56899999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
|+++++..+-..+|+|+++++++.++|.|++..+ ..+.++...+
T Consensus 271 R~~~~~~~~~~~~g~~~~~~~~r~~~G~~~~~~~------------------------------------~~~~~~~~~i 314 (380)
T TIGR01142 271 RPHDTGMVTLISQGLSEFALHVRAILGLPIPGIP------------------------------------QLGPAASAVI 314 (380)
T ss_pred CCCCCceEEeeecCCCHHHHHHHHHcCCCCCCcc------------------------------------ccCCceEEEE
Confidence 9998754443446999999999999999886310 1122333445
Q ss_pred ccCCCCCCCCCCCCcccccc----ccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000092 447 TSEDPDDGFKPTSGKVQELS----FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~----~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2267)
.++. .|++..+. ....|++.+.+..++|.. ....+|||++.|+|.++|++++..+++.++|+
T Consensus 315 ~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~G~v~~~~~s~~~~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 315 KAKV--------TGYSPAFRGLEKALSVPNTQVRLFGKPEAY----VGRRLGVALATAKSVEAARERAEEVAHAVEVR 380 (380)
T ss_pred Eccc--------ccccchhhHHHHHHcCCCCEEEECCCCcCC----CCCcCEEEEEecCCHHHHHHHHHHHHhhccCC
Confidence 5432 23222211 223467666665555543 33569999999999999999999999988875
No 27
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=2.9e-38 Score=435.12 Aligned_cols=377 Identities=18% Similarity=0.287 Sum_probs=302.9
Q ss_pred CCCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000092 45 KKPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~ 113 (2267)
++.+|||||+|+|.+ +..+++++|++||+|+ .+..+.+....+.++||+.|..|
T Consensus 3 ~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi-----------~v~~np~~~~~~~~~aD~~y~~p---- 67 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVI-----------LVNSNPATIMTDPEMADKVYIEP---- 67 (1050)
T ss_pred CCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEE-----------EEecchhhccCChhcCCEEEECC----
Confidence 356899999999974 4679999999999986 45444444456778999999886
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCC-----CCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCC
Q 000092 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHAS-----EIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2267)
Q Consensus 114 ~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~s-----En~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtp 188 (2267)
.+.+.|.++++++++|+|+|++|... ........|++.|+.++||+++++..+.||..++++++++|+|+|
T Consensus 68 ----~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp 143 (1050)
T TIGR01369 68 ----LTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVP 143 (1050)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 35788999999999999999987522 222234578889999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC
Q 000092 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268 (2267)
Q Consensus 189 p~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~ 268 (2267)
||.. +++.+++.++++++|||+||||+.|+||+|+++|+|.+||.+++......++.
T Consensus 144 ~~~~-----------------------v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~ 200 (1050)
T TIGR01369 144 ESEI-----------------------AHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPI 200 (1050)
T ss_pred Ceee-----------------------cCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCC
Confidence 9876 78899999999999999999999999999999999999999999888877666
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc------ccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCc
Q 000092 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR------RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342 (2267)
Q Consensus 269 ~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr------r~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy 342 (2267)
.+++||+|++|.+|+++++++|.+|+++.+ |.+++ +..+.+..+|+..++++..++|++.|.+++++|||
T Consensus 201 ~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~----~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~ 276 (1050)
T TIGR01369 201 NQVLVEKSLAGWKEIEYEVMRDSNDNCITV----CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGI 276 (1050)
T ss_pred CcEEEEEcccCceEEEEEEEEeCCCCEEEE----eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 789999999998999999999999998876 55544 33556677898778889999999999999999999
Q ss_pred eeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
+|.++|||+++++++++||+|||||+++++.+++++||+|+++.++++++|.++..++. +
T Consensus 277 ~G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s~atG~pl~~~~~~~alG~~l~~~~n--------~------------ 336 (1050)
T TIGR01369 277 EGGCNVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIAKVAAKLAVGYGLDELKN--------P------------ 336 (1050)
T ss_pred cceeEEEEEEECCCCcEEEEEeecCcCcchhhhhHHhCCCHHHHHHHHHcCCCchhhcC--------C------------
Confidence 99999999999766889999999999999999999999999999999999999875421 0
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCC
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2267)
..| ++| ..|.|+.+.|. +.+|..+- +...+...++..-+. .+|||+++|+|
T Consensus 337 --------------i~g---------~~~-~~~~p~~~~~~-~k~p~~~~---~~~~~~~~~~~~~~k-~~G~v~~~g~~ 387 (1050)
T TIGR01369 337 --------------VTG---------TTP-ASFEPSLDYVV-VKIPRWDF---DKFAGVDRKLGTQMK-SVGEVMAIGRT 387 (1050)
T ss_pred --------------CcC---------cCc-cccCcCCCeEE-EEEEeCCC---CCCCcccCCcCcccc-eeeEEEEECCC
Confidence 001 222 23455555432 11111110 000111111111111 39999999999
Q ss_pred HHHHHHHHHHhhcc
Q 000092 503 RALAIANMVLGLKE 516 (2267)
Q Consensus 503 reeA~~~l~~AL~e 516 (2267)
++||+.++.++|+.
T Consensus 388 ~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 388 FEEALQKALRSLEI 401 (1050)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999986
No 28
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=9.3e-38 Score=428.20 Aligned_cols=308 Identities=20% Similarity=0.279 Sum_probs=263.4
Q ss_pred CccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
..+||||+|+|.. ++.+++++|++||+++ ++..+++..+.+..+||+.|..|
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI-----------~v~~npetvstd~~~aD~~y~~p------ 635 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETI-----------MMNSNPETVSTDYDTSDRLYFEP------ 635 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEE-----------EEeCCCccccCCcccCCeEEEEe------
Confidence 4689999999963 5679999999999986 55556667777789999999985
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCc-------------CCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHH
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGH-------------ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQA 182 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~-------------~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~ 182 (2267)
.+.+.|+++|+++++|+|+|++|. +++++.+++ +.+.|+.++||+++++..++||..+++++++
T Consensus 636 --l~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~ 712 (1102)
T PLN02735 636 --LTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNE 712 (1102)
T ss_pred --CCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHH
Confidence 569999999999999999999884 333334444 4445899999999999999999999999999
Q ss_pred cCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH
Q 000092 183 ANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262 (2267)
Q Consensus 183 aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~ 262 (2267)
+|||+|||.. +++.+++.++++++||||||||+.|+||+|+++|+|.+||..+++.+
T Consensus 713 ~GIp~p~~~~-----------------------v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a 769 (1102)
T PLN02735 713 LKIEQPKGGI-----------------------ARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETA 769 (1102)
T ss_pred cCCCCCCeeE-----------------------eCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHH
Confidence 9999999865 67889999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc-ccc-eEEEecCCCCCCHHHHHHHHHHHHHHHHHc
Q 000092 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR-RHQ-KIIEEGPITVAPLETVKKLEQAARRLAKCV 340 (2267)
Q Consensus 263 ~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr-r~q-KiieeaPa~~l~~e~~~eL~~~A~rla~aL 340 (2267)
....++.+++||+|+++++|++|++++|++|+++.....+..... -|. ......|+..+++++.++|.+.+.+++++|
T Consensus 770 ~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L 849 (1102)
T PLN02735 770 VEVDPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRL 849 (1102)
T ss_pred HHhcCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 877767789999999988999999999998987754332211000 010 011235776799999999999999999999
Q ss_pred CceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 341 Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
||+|+++|||+++ ++|++||||+|||+++++|++++++|+|++++++++++|.+|..
T Consensus 850 ~~~G~~~vqf~v~-~dg~~yviEiNpR~s~t~p~~~katGidl~~~~~~~~~G~~l~~ 906 (1102)
T PLN02735 850 NVCGLMNCQYAIT-PSGEVYIIEANPRASRTVPFVSKAIGHPLAKYASLVMSGKSLKD 906 (1102)
T ss_pred CCcceeeEEEEEc-CCCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhh
Confidence 9999999999997 36889999999999999999999999999999999999999864
No 29
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=1.6e-36 Score=393.56 Aligned_cols=380 Identities=16% Similarity=0.186 Sum_probs=303.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.+.+||+|+|+|..+..++++++++||+++ ++ |.+++++..++||+++.. +|.|.+.+.+
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi-----------~l--d~~~~apa~~~AD~~~v~-------~~~D~~~l~~ 79 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVK-----------VL--DPLEDCPASSVAARHVVG-------SFDDRAAVRE 79 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhCceeeeC-------CCCCHHHHHH
Confidence 346799999999999999999999999986 44 556788999999998875 5688999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|++ +|.|.....+. +....+.+++.|+. ++|+++++..++||..+|++++++|||+|||..
T Consensus 80 ~a~~--~dvIt~e~e~v--~~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~------------- 141 (577)
T PLN02948 80 FAKR--CDVLTVEIEHV--DVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFME------------- 141 (577)
T ss_pred HHHH--CCEEEEecCCC--CHHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEE-------------
Confidence 9998 68887543222 23455788888876 479999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhie 284 (2267)
+.+.+++.++++++|||+||||..|| ||+|+++|++.+|+.++++.+... +.+++||+|+++.+|++
T Consensus 142 ----------v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~--~~~vlvEefI~~~~Eis 209 (577)
T PLN02948 142 ----------IDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF--ERGLYAEKWAPFVKELA 209 (577)
T ss_pred ----------eCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC--CCcEEEEecCCCCeEEE
Confidence 67888988889999999999999887 799999999999999999887532 45899999999889999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2267)
|.++++.+|++.++ +..+..++.+.......|+. +++++.+++++.|.+++++||++|+++|||++++ +|.+||+||
T Consensus 210 V~v~r~~~G~i~~~-p~~E~~~~~~~~~~~~~Pa~-l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~v~v~EI 286 (577)
T PLN02948 210 VMVARSRDGSTRCY-PVVETIHKDNICHVVEAPAN-VPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQILLNEV 286 (577)
T ss_pred EEEEECCCCCEEEe-cCcccEEECCeeEEEEECCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCcEEEEEE
Confidence 99999888887764 33455566665555667886 8899999999999999999999999999999984 678999999
Q ss_pred CccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000092 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2267)
Q Consensus 365 NpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~a 444 (2267)
|||++++..++...+++|+.+++++.++|.|++.. ....++++..
T Consensus 287 npRpg~sGh~t~ea~~~s~fe~~vRa~lGlpl~~~-----------------------------------~~~~~~A~m~ 331 (577)
T PLN02948 287 APRPHNSGHYTIEACYTSQFEQHLRAVLGLPLGDT-----------------------------------SMKVPAAIMY 331 (577)
T ss_pred eCCCCCCCceeeecccCCHHHHHHHHHcCCCCCCc-----------------------------------cccCCcEEEE
Confidence 99999765566668999999999999999998631 0112456777
Q ss_pred EEccCCCC-CCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000092 445 RVTSEDPD-DGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2267)
Q Consensus 445 RI~aEdp~-~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2267)
.+..++.. .++.+....+.. ....|++.+.+..+++.+ ....+|||+++|+|++++++++..+++.+.+
T Consensus 332 nl~g~~~~~~g~~~~~~~~~~--~~~~p~~~v~~ygk~~~r----~~rkmGhV~~~g~~~~e~~~~~~~~~~~~~~ 401 (577)
T PLN02948 332 NILGEDEGEAGFRLAHQLMGR--ALNIPGASVHWYGKPEMR----KQRKMGHITVVGPSAAEVEARLDQLLAEESA 401 (577)
T ss_pred EEeccccccccccchhhHHHH--HhhCCCCEEEEecCCCCC----CCCeeEEEEEecCCHHHHHHHHHHHHhhhcc
Confidence 77776522 233333211211 122355555554444433 2257999999999999999999999986654
No 30
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=3.1e-35 Score=369.27 Aligned_cols=379 Identities=16% Similarity=0.173 Sum_probs=286.0
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
+||||+|+|..+..++++++++||+++ .+ |.+++++...+||+++.++ +.|.+.++++|+
T Consensus 13 ~~ilIiG~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~ 72 (395)
T PRK09288 13 TRVMLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSHVID-------MLDGDALRAVIE 72 (395)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchHHhhhheEECC-------CCCHHHHHHHHH
Confidence 589999999999999999999999985 44 4456677788999988774 467899999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
++++|+|+|+.+.... .....+++.|+.+ .|++++++.+.||..+|+++ +++|||+|+|..
T Consensus 73 ~~~id~vi~~~e~~~~--~~~~~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~--------------- 134 (395)
T PRK09288 73 REKPDYIVPEIEAIAT--DALVELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYRF--------------- 134 (395)
T ss_pred HhCCCEEEEeeCcCCH--HHHHHHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceE---------------
Confidence 9999999998654332 2345567778765 49999999999999999998 489999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--~~~I~VEeyI~g~rhieV 285 (2267)
+++.+++.++++++|||+|+||..|+||+|+++|+|.+|+.++++.+..... +.+++||+|++++.|+++
T Consensus 135 --------~~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv 206 (395)
T PRK09288 135 --------ADSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITL 206 (395)
T ss_pred --------ECCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEE
Confidence 7899999999999999999999999999999999999999999998764332 368999999997789999
Q ss_pred EEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeC
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELN 365 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEIN 365 (2267)
.++.+..|....+...+- .+..........|+. ++++..+++.+.+.+++++||++|+.++||+++ ++++||+|+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~-l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~--~~~~~viEin 282 (395)
T PRK09288 207 LTVRAVDGGTHFCAPIGH-RQEDGDYRESWQPQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVK--GDEVYFSEVS 282 (395)
T ss_pred EEEEcCCCCEEEecCccc-EEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCeEEEEEec
Confidence 999987655554432210 111111122235665 788999999999999999999999999999998 4589999999
Q ss_pred ccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEE
Q 000092 366 PRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVR 445 (2267)
Q Consensus 366 pRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aR 445 (2267)
||+++....+-..+|+|+++++++.++|.|++.+. ..+.+..+.
T Consensus 283 pR~~~~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~------------------------------------~~~~~~~~~ 326 (395)
T PRK09288 283 PRPHDTGMVTLISQNLSEFELHARAILGLPIPDIR------------------------------------LYSPAASAV 326 (395)
T ss_pred CCCCCCcceeeeecccCHHHHHHHHHcCCCCCccc------------------------------------ccCCceeEE
Confidence 99998754443345999999999999998874210 011122233
Q ss_pred EccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 446 VTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 446 I~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+.++.+.. .....|. ... ...+++.+.+.. .........+|||++.|+|.++|++++..+++.++|.|
T Consensus 327 ~~~~~~~~-~~~i~~~-~~~--~~~~g~~~~~~~----k~~~~~~~~lG~v~~~g~~~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 327 ILAEGESA-NPSFDGL-AEA--LAVPGTDVRLFG----KPEIRGGRRMGVALATGEDVEEAREKAKEAASKVKVVG 394 (395)
T ss_pred Eecccccc-ccchhhH-HHH--hcCCCCEEEEec----CCCCCCCCeeEEEEeecCCHHHHHHHHHHHHhheeecc
Confidence 44433111 0001121 111 123454332211 11222345699999999999999999999999999988
No 31
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=7.7e-36 Score=409.43 Aligned_cols=309 Identities=17% Similarity=0.268 Sum_probs=263.6
Q ss_pred CCCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000092 45 KKPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~ 113 (2267)
++.+|||||+|+|++ +..+++++|++||+|+ .+..+...-.....+||+++..|
T Consensus 20 ~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi-----------~vd~np~t~~~~~~~aD~~yi~p---- 84 (1102)
T PLN02735 20 RTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVV-----------LINSNPATIMTDPETADRTYIAP---- 84 (1102)
T ss_pred ccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEE-----------EEeCCcccccCChhhCcEEEeCC----
Confidence 456899999999986 5579999999999986 44222222223446899988766
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCch----HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCC
Q 000092 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPEL----PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2267)
Q Consensus 114 ~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~s-En~~l----a~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtp 188 (2267)
.+.+.+.++++++++|+|+|++|... ++... ...|++.|+.++|++++++..+.||..++++++++|||+|
T Consensus 85 ----~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp 160 (1102)
T PLN02735 85 ----MTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTP 160 (1102)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCC
Confidence 34678999999999999999876433 33111 2456788999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC
Q 000092 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP 267 (2267)
Q Consensus 189 p~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~ 267 (2267)
+|.. +.+.+++.++++++| |||||||+.|+||+|+.+|+|.+||..+++.+....+
T Consensus 161 ~~~~-----------------------v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~ 217 (1102)
T PLN02735 161 PSGI-----------------------ATTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASI 217 (1102)
T ss_pred CeeE-----------------------eCCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCC
Confidence 9865 678899999999999 9999999999999999999999999999998877677
Q ss_pred CCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc------ccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcC
Q 000092 268 GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR------RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341 (2267)
Q Consensus 268 ~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr------r~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLG 341 (2267)
.++++||+|+.|.+|++|++++|..|+++.+ |++.. +....+..+|+..++++..++|+++|.+++++||
T Consensus 218 ~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v----~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLg 293 (1102)
T PLN02735 218 TSQVLVEKSLLGWKEYELEVMRDLADNVVII----CSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIG 293 (1102)
T ss_pred CCeEEEEEecCCCeEEEEEEEEcCCCCEEEE----eeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 7899999999998999999999988888765 43332 1234566689877999999999999999999999
Q ss_pred c-eeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 342 Y-VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 342 y-~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
+ .|.++|||++++++|++||+|+|||+++++++++++||+|+++.++++|+|.+|+.+
T Consensus 294 i~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l~s~atG~~~a~~~~klalG~~l~~~ 352 (1102)
T PLN02735 294 VECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQI 352 (1102)
T ss_pred CCcCceEEEEEEECCCCcEEEEEecCCCCCcchhhhhhhCCCHHHHHHHHHCCCChhhh
Confidence 9 599999999997678999999999999999999999999999999999999999765
No 32
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=6.9e-35 Score=363.34 Aligned_cols=364 Identities=20% Similarity=0.278 Sum_probs=283.8
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
+++|+|+|+|+.+..++++++++||+++ +. |.+++++..++||+++.. +|.|.+.+.+++
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~-----------~~--d~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a 61 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVI-----------VL--DPDPDSPAAQVADEVIVA-------DYDDVAALRELA 61 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchhHhCceEEec-------CCCCHHHHHHHH
Confidence 5789999999999999999999999986 44 556778889999999886 468899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+ .+|+|.+.+. .......+.+++. ..++|+++++..++||..+|++++++|||+|||..
T Consensus 62 ~--~~dvit~e~e--~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 120 (372)
T PRK06019 62 E--QCDVITYEFE--NVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAV--------------- 120 (372)
T ss_pred h--cCCEEEeCcC--CCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceE---------------
Confidence 8 5688875433 3333344455555 35789999999999999999999999999999986
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
+.+.+++.++++++|||+|+||+.|| ||+|+++|++.+|+..+++.+. ..+++||+|+++++|++|.
T Consensus 121 --------v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~I~~~~E~sv~ 188 (372)
T PRK06019 121 --------VDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLG----SVPCILEEFVPFEREVSVI 188 (372)
T ss_pred --------eCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecCCCCeEEEEE
Confidence 78899999999999999999999975 9999999999999999988762 4689999999988999999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
++.+.+|+++.+... ...++.+.......|+. +++++.+++++.+.+++++|||+|+.+|||+++ ++|++||+|+||
T Consensus 189 ~~~~~~G~~~~~p~~-e~~~~~gi~~~~~~pa~-~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~-~dg~~~v~Einp 265 (372)
T PRK06019 189 VARGRDGEVVFYPLV-ENVHRNGILRTSIAPAR-ISAELQAQAEEIASRIAEELDYVGVLAVEFFVT-GDGELLVNEIAP 265 (372)
T ss_pred EEECCCCCEEEeCCc-ccEEeCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCccceeEEEEEEc-CCCeEEEEEecC
Confidence 999988988765322 23344333333457875 888999999999999999999999999999998 367799999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
|++++..+|...+|+|+.+.+++..+|.|++.. ...+.++..-|
T Consensus 266 R~~~sg~~t~~~~~~sqf~~~ira~~Glpl~~~------------------------------------~~~~~~~m~ni 309 (372)
T PRK06019 266 RPHNSGHWTIEACSTSQFEQHLRAILGLPLGTT------------------------------------RLLSPAVMVNL 309 (372)
T ss_pred CccCcccEEhhhcCccHHHHHHHHHcCCCCCCc------------------------------------cccCceEEEEE
Confidence 999988888899999999999999999998621 11223455555
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhc
Q 000092 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~ 515 (2267)
..++. . ..+... ....|++.+++.-++.. .....+|||.+.|+|.+++++++..+..
T Consensus 310 lg~~~---~--~~~~~~---~~~~~~~~~~~ygk~~~----~~~rk~Ghv~~~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 310 LGDDW---L--EPRWDA---LLALPGAHLHLYGKAEA----RPGRKMGHVTVLGDDVEALLAKLEALAP 366 (372)
T ss_pred ECchh---h--hhHHHH---HhhCCCCEEEECCCCCC----CCCCceEEEEeecCCHHHHHHHHHHHHh
Confidence 54321 0 011111 11224433322211111 1223499999999999999999988876
No 33
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=9.5e-35 Score=401.85 Aligned_cols=308 Identities=19% Similarity=0.279 Sum_probs=262.2
Q ss_pred CCccEEEEECchHHH-----------HHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 46 KPIHSILIANNGMAA-----------VKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 46 ~~~kkVLIan~G~~A-----------v~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
..++||||+|+|.+. ..++++++++||+|+ ++..+........++||+.+..|
T Consensus 5 ~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi-----------~v~~~p~~~~~~~~~aD~~y~~p----- 68 (1066)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVV-----------LVNSNPATIMTDPEMADATYIEP----- 68 (1066)
T ss_pred CCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEE-----------EEcCCcccccCCcccCCEEEECC-----
Confidence 458999999999864 469999999999986 44333222234556899998876
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCc--h--HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPE--L--PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG~G~~s-En~~--l--a~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp 189 (2267)
.+.+.|.++++++++|+|+|+.|... .+.. + ...|++.|+.++||+++++..+.||..++++++++|+|+|+
T Consensus 69 ---~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 145 (1066)
T PRK05294 69 ---ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPR 145 (1066)
T ss_pred ---CCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCC
Confidence 34799999999999999999987543 2211 1 23577789999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000092 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2267)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2267)
|.. +++.+++.++++++|||+||||+.|.||+|+++|++.+||.+++++.....+..
T Consensus 146 ~~~-----------------------v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~ 202 (1066)
T PRK05294 146 SGI-----------------------AHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVT 202 (1066)
T ss_pred eee-----------------------eCCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCC
Confidence 876 788999999999999999999999999999999999999999998776666667
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccc-----c-ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR-----H-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr-----~-qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~ 343 (2267)
+++||+|++|.+|+++.+++|++|+++.+. ..++. | ..++..+|+..++++..+++++.|.+++++|||+
T Consensus 203 ~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~----~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~ 278 (1066)
T PRK05294 203 EVLIEESLLGWKEYEYEVMRDKNDNCIIVC----SIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVE 278 (1066)
T ss_pred eEEEEEcccCceEEEEEEEEcCCCCEEEEe----eeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 899999999989999999999999988763 33221 2 3345567886688889999999999999999999
Q ss_pred -eeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 344 -GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 344 -Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
|+++|||+++++++++||+|+|||++++..+++.++|+|+....+++++|.++..+
T Consensus 279 ~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m 335 (1066)
T PRK05294 279 TGGCNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEI 335 (1066)
T ss_pred cCceEEEEEEECCCCcEEEEEeecCCCcceeeeeHhhCCCHHHHHHHHHcCCChHHh
Confidence 99999999997678899999999999999998999999999999999999988654
No 34
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=5.3e-33 Score=344.28 Aligned_cols=293 Identities=22% Similarity=0.297 Sum_probs=247.9
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
+|+|+|+|+.+..++++++++||+|+ ++ |.+++++..++||+++.. +|.|.+.|.+++++
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~-----------~~--d~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~ 60 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVH-----------VL--DPDANSPAVQVADHVVLA-------PFFDPAAIRELAES 60 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--CCCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh
Confidence 48999999999999999999999986 45 566788999999998844 57789999999986
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
. |.|.+.+++.+ ......+++.|+. ++|++++++.++||..++++++++|||+|+|..
T Consensus 61 ~--dvit~e~e~i~--~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~----------------- 118 (352)
T TIGR01161 61 C--DVITFEFEHVD--VEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLV----------------- 118 (352)
T ss_pred C--CEEEeCcCcCC--HHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccE-----------------
Confidence 4 77765543322 2245677788865 569999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+.+.+++.++++++|||+|+||..|+ ||+|+++|++.+|+.++++... ..++++|+|+++++|++|.++
T Consensus 119 ------~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~I~~~~E~sv~~~ 188 (352)
T TIGR01161 119 ------IKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELG----DRECIVEEFVPFERELSVIVA 188 (352)
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC----CCcEEEEecCCCCeEEEEEEE
Confidence 77889999999999999999999987 9999999999999999888753 358999999997799999999
Q ss_pred EcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccC
Q 000092 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2267)
.+.+|++..+ ......++.+.......|+. +++++.+++++.+.++++++||+|++++||++++ +|++||+|+|||+
T Consensus 189 ~~~~G~~~~~-~~~~~~~~~g~~~~~~~p~~-~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg~~~v~EinpR~ 265 (352)
T TIGR01161 189 RSADGETAFY-PVVENIHQDGILRYVVAPAA-VPDAIQARAEEIARRLMEELGYVGVLAVEMFVLP-DGRLLINELAPRV 265 (352)
T ss_pred EcCCCCEEEE-CCcccEEeCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEecCCC
Confidence 8888886654 33333344333333456774 7888899999999999999999999999999983 6779999999999
Q ss_pred cCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 369 qgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+++..++...+++|..+.+++.++|.|++
T Consensus 266 ~~sg~~~~~~~~~s~f~~~~ra~~g~~l~ 294 (352)
T TIGR01161 266 HNSGHYTLDGCSTSQFEQHLRAILGLPLG 294 (352)
T ss_pred CCcCcCchhhccccHHHHHHHHHcCCCCC
Confidence 99888888899999999999999999986
No 35
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.4e-33 Score=386.62 Aligned_cols=309 Identities=17% Similarity=0.286 Sum_probs=258.8
Q ss_pred CCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 46 KPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 46 ~~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
+.++||||+|+|.+ +..++++++++||+++ .+..+...-.....+||..|..|
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-----------~v~~np~~~~~d~~~ad~~y~ep----- 68 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-----------LVNPNPATIMTDPAPADTVYFEP----- 68 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-----------EEeCCcchhhcCcccCCeeEECC-----
Confidence 56899999999986 5689999999999986 44222111111224788887765
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCch----HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPEL----PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG~G~~s-En~~l----a~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp 189 (2267)
.+.+.+.++++++++|+|+|++|... .+... ...|++.|+.++||+++++..+.||..++++++++|+|+|+
T Consensus 69 ---~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~ 145 (1068)
T PRK12815 69 ---LTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPE 145 (1068)
T ss_pred ---CCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCC
Confidence 35799999999999999999876443 22111 12467789999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000092 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2267)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2267)
|.. +++.+++.++++++|||+||||+.|.||+|+.+|+|.+||.++++......+..
T Consensus 146 ~~~-----------------------v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~ 202 (1068)
T PRK12815 146 SEI-----------------------VTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIH 202 (1068)
T ss_pred cee-----------------------eCCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCC
Confidence 876 788999999999999999999999999999999999999999998887666667
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccc------eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ------KIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~q------KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~ 343 (2267)
+++||+|++|.+|++|.+++|.+|+++.+ |...+.+. ..+..+|+..++++..+++++.|.+++++||++
T Consensus 203 ~vLVEe~I~G~~E~sv~v~rD~~g~~~~~----~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~ 278 (1068)
T PRK12815 203 QCLLEESIAGWKEIEYEVMRDRNGNCITV----CNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVV 278 (1068)
T ss_pred eEEEEEccCCCeEEEEEEEEcCCCCEEEE----EeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999998999999999999998876 33333221 123346886688899999999999999999999
Q ss_pred eeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCch
Q 000092 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400 (2267)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ip 400 (2267)
|.++|||+++++++++|++|+|||++++..++..++|+++.+..+++++|.+|+.|+
T Consensus 279 G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~~~atG~pl~~~~~~~alG~~l~ei~ 335 (1068)
T PRK12815 279 GGCNIQFALDPKSKQYYLIEVNPRVSRSSALASKATGYPIAKIAAKLAVGYTLNELK 335 (1068)
T ss_pred CceEEEEEEECCCCcEEEEEEecCcccchhhhhHhhCCcHHHHHHHHHcCCChHHhc
Confidence 999999999976678999999999999999999999999999999999999987653
No 36
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=8.2e-33 Score=349.70 Aligned_cols=381 Identities=15% Similarity=0.139 Sum_probs=275.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCC-ChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRIN-AEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~-a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
|||+|||++.+..+..++++++++||+++ ++....+.... ......+|....++ +.|.+.+++
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v---------~v~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~l~~ 64 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPI---------AVTSSCLLDPYYYASFDTSDFIEVII-------NGDIDDLVE 64 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEE---------EEEcCCCCchhhhcccCcccchhhhc-------CCCHHHHHH
Confidence 78999999999999999999999999885 22222111111 12233344333332 256899999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHH-cCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLST-KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~-~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
+++++++|+|+||..... .++..+.+ .|++ .|++++++..++||..|+++++++|||+|++..
T Consensus 65 ~~~~~~~d~vi~~~e~~~---~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~------------ 128 (416)
T PRK07206 65 FLRKLGPEAIIAGAESGV---ELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQIN------------ 128 (416)
T ss_pred HHHHcCCCEEEECCCccH---HHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEEe------------
Confidence 999999999999853322 23344433 4543 389999999999999999999999999999876
Q ss_pred ccCcccccccccCCHHHHHHHHhhhCC---cEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh-----CCCCcEEEEEe
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVVGY---PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE-----VPGSPIFIMKV 276 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGy---PVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e-----~~~~~I~VEey 276 (2267)
+.+.+++.++++.+|| |+||||..|+||+||++|+|.+|+.++++++... ..+.+++||+|
T Consensus 129 -----------~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~ 197 (416)
T PRK07206 129 -----------TADWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEY 197 (416)
T ss_pred -----------cCCHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEc
Confidence 6788999999999998 9999999999999999999999999999987643 12468999999
Q ss_pred ccccceeeEEEEEcCCCCEEEe--cccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce-eeeEEEEEEE
Q 000092 277 ASQSRHLEVQLLCDQYGNVAAL--HSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYS 353 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~vi~l--~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~-Ga~tVEfl~d 353 (2267)
++| .|++|+++.. +|+++.. ..+..........+.........+....+++.+.+.++++++|+. |++|+||+++
T Consensus 198 i~G-~E~sv~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~ 275 (416)
T PRK07206 198 LIG-TEYVVNFVSL-DGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLT 275 (416)
T ss_pred ccc-EEEEEEEEEE-CCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEc
Confidence 987 7999998874 3665432 111100000111111111111134667889999999999999995 9999999998
Q ss_pred ccCCcEEEeeeCccCcCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccc
Q 000092 354 METGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQ 431 (2267)
Q Consensus 354 ~~~g~~yfLEINpRlqgeh--pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~ 431 (2267)
++++++||||||++|.. .+++.++|+|+.++.++.++|.+....+ .
T Consensus 276 --~~g~~liEin~R~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~~~------------------------------~ 323 (416)
T PRK07206 276 --ADGPRLIEIGARLDGGLHPDVARLATGDSQLDATVESLADPDVFRET------------------------------L 323 (416)
T ss_pred --CCCCEEEEECCccCCCCccchhhhhcCcCHHHHHHHHHhCchhhccc------------------------------c
Confidence 56699999999999874 5678999999999999999997642100 0
Q ss_pred cCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc----ccCCCcE-EEEEeeeeCCcccccCC--cccEEEEEEeCCHH
Q 000092 432 AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS----FKSKPNV-WAYFSVKSGGGIHEFSD--SQFGHVFAFGESRA 504 (2267)
Q Consensus 432 ~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~----~~s~~~V-~~~~~v~~G~~i~~~~D--s~~g~via~G~~re 504 (2267)
.....+.+|+....+.+ |..|++.++. +...|+| ...+.++.|+.|....| +.+|+|++.|+|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~d~~~~~g~v~~~~~~~~ 395 (416)
T PRK07206 324 REGYRLKAHVFNVFLIS--------PAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYVPQTVDLFSQPGTVYLVHKDKE 395 (416)
T ss_pred CCCcChhhceEEEEEec--------CCCceEeCCccHHHHHhCCchhheEEecCCCCCccCceecCCCCEEEEEEcCCHH
Confidence 01112234443333332 3467777664 2334555 45667889999988766 45999999999999
Q ss_pred HHHHHHHH
Q 000092 505 LAIANMVL 512 (2267)
Q Consensus 505 eA~~~l~~ 512 (2267)
++.+....
T Consensus 396 ~~~~~~~~ 403 (416)
T PRK07206 396 QLWQDYEK 403 (416)
T ss_pred HHHHHHHH
Confidence 99887654
No 37
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=8.9e-33 Score=380.99 Aligned_cols=305 Identities=21% Similarity=0.353 Sum_probs=256.8
Q ss_pred ccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000092 48 IHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2267)
Q Consensus 48 ~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~ 116 (2267)
-+||||+|.|.. ++.++++++++||+++ .+..+....+.....+|+.+..|
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI-----------~v~~npetvs~d~~~~D~ly~ep------- 615 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETI-----------MINYNPETVSTDYDTSDRLYFEP------- 615 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEE-----------EEecCCccccccccccceEEEec-------
Confidence 479999999975 7899999999999986 44223333344566899887654
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCcc
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~ 196 (2267)
.+.+.++++++++++|+|++++|.... ..++..|++.|++++|++++++..+.||..++++++++|||+|+|..
T Consensus 616 -~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~---- 689 (1050)
T TIGR01369 616 -LTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKT---- 689 (1050)
T ss_pred -CCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEE----
Confidence 348999999999999999999875442 24678888999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000092 197 IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2267)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEey 276 (2267)
+.+.+++.++++++|||+||||+.++||+|+.+|+|.+||..+++++....++.+++||+|
T Consensus 690 -------------------v~s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeef 750 (1050)
T TIGR01369 690 -------------------ATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKY 750 (1050)
T ss_pred -------------------ECCHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeec
Confidence 7899999999999999999999999999999999999999999999887777789999999
Q ss_pred ccccceeeEEEEEcCCCCEEEecccccccccc--cc-eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEE
Q 000092 277 ASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr--~q-KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d 353 (2267)
+++++|++|++++|+ |+++.....+. +.+. |. ......|+..++++..++|.+.+.++++++|+.|++++||+++
T Consensus 751 I~~G~E~~Vd~l~d~-g~v~i~~i~e~-~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~ 828 (1050)
T TIGR01369 751 LEDAVEVDVDAVSDG-EEVLIPGIMEH-IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK 828 (1050)
T ss_pred CCCCeEEEEEEEEeC-CEEEEEEEEEe-ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE
Confidence 997799999999986 55544321110 0010 10 1122346666888999999999999999999999999999998
Q ss_pred ccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 354 ~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
++++|+||+|||++++.|+++.++|+|++++.+++++|.++..+
T Consensus 829 --~~~~yvIEvNpR~s~t~p~vs~atGi~l~~~~~~~~lG~~l~~~ 872 (1050)
T TIGR01369 829 --DGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKKLEEL 872 (1050)
T ss_pred --CCeEEEEEEeCCCCchHHHHHHHHCCCHHHHHHHHHcCCCcccc
Confidence 68999999999999999999999999999999999999987643
No 38
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=9.1e-32 Score=340.99 Aligned_cols=381 Identities=18% Similarity=0.204 Sum_probs=265.3
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||||+|+|..+..+++++++.|+.+. ++..+ +.+....++....+.. ++.|.+.|+++|++
T Consensus 2 kiliiG~G~~~~~l~~~~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~~-----~~~d~~~l~~~~~~ 62 (423)
T TIGR00877 2 KVLVIGNGGREHALAWKLAQSPLVKY---------VYVAP-----GNAGTARLAKNKNVAI-----SITDIEALVEFAKK 62 (423)
T ss_pred EEEEECCChHHHHHHHHHHhCCCccE---------EEEEC-----CCHHHhhhcccccccC-----CCCCHHHHHHHHHH
Confidence 89999999999999999999986542 11222 1222223333222211 55789999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
+++|+|+++.+... ...+++.+++.|++++||++++++.+.||..++++++++|||+|+|..
T Consensus 63 ~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~----------------- 124 (423)
T TIGR00877 63 KKIDLAVIGPEAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEV----------------- 124 (423)
T ss_pred hCCCEEEECCchHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEE-----------------
Confidence 99999999854211 123567888899999999999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHHhhhCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC---CCCcEEEEEeccccceeeE
Q 000092 210 VYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV---PGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~---~~~~I~VEeyI~g~rhieV 285 (2267)
+.+.+++.++++++||| +|+||..|+||+|+++|++.+|+.++++++.... .+.+++||+|++| .|++|
T Consensus 125 ------~~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv 197 (423)
T TIGR00877 125 ------FTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSL 197 (423)
T ss_pred ------ECCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEE
Confidence 77899999999999999 9999999999999999999999999999876552 2457999999998 79999
Q ss_pred EEEEcCCCCEEEecccccccccccceE------------EEecCCCCCCHHHHHHH-HHHHHHHH---HHcC--ceeeeE
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKL-EQAARRLA---KCVN--YVGAAT 347 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~qKi------------ieeaPa~~l~~e~~~eL-~~~A~rla---~aLG--y~Ga~t 347 (2267)
.++.|+. .+..+. +.+.+++. ...+|++.++++...++ .+.+.++. .++| |+|+++
T Consensus 198 ~~~~dg~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ 271 (423)
T TIGR00877 198 LAFVDGK-TVIPMP-----PAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLY 271 (423)
T ss_pred EEEEcCC-eEEece-----eeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEE
Confidence 9999863 343332 11222221 12356655666665553 33444444 4444 789999
Q ss_pred EEEEEEccCCcEEEeeeCccCcCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccC
Q 000092 348 VEYLYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATP 426 (2267)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqgehp-vtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~ 426 (2267)
+||+++ ++++|++|+|||+++... .....+++|+.+++++++.|.. +.++ +.
T Consensus 272 ie~~~t--~~g~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~l-~~~~------------------------~~ 324 (423)
T TIGR00877 272 AGLMLT--KEGPKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKL-DEVE------------------------LR 324 (423)
T ss_pred EEEEEE--CCCcEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCCC-CCCC------------------------ce
Confidence 999999 445999999999987532 2333467999999999999952 2110 01
Q ss_pred CCccccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc-c--cCCCcEEEE-Eeeee-CCcccccCCcccEEEEEEeC
Q 000092 427 FDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS-F--KSKPNVWAY-FSVKS-GGGIHEFSDSQFGHVFAFGE 501 (2267)
Q Consensus 427 f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~-~--~s~~~V~~~-~~v~~-G~~i~~~~Ds~~g~via~G~ 501 (2267)
| .++.++...+.+.. +....++...+. + ...+++.++ .++.. .+.+ ....+++|+|++.|+
T Consensus 325 ~---------~~~~a~~~~~~~~~----yp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~vi~~g~ 390 (423)
T TIGR00877 325 F---------DNRAAVTVVLASEG----YPGDYRKGDPITGEPLIEAEGVKVFHAGTKQDNGKL-VTSGGRVLAVTALGK 390 (423)
T ss_pred E---------CCCceEEEEEecCC----cCCCCCCCCEeeCCcccccCCCEEEECceeccCCEE-EEcCCEEEEEEEecC
Confidence 1 11223333343322 111123223222 1 122344332 12211 1111 124567999999999
Q ss_pred CHHHHHHHHHHhhcceEEec
Q 000092 502 SRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G 521 (2267)
|+++|++++.++++.+++.|
T Consensus 391 ~~~~a~~~~~~~~~~i~~~~ 410 (423)
T TIGR00877 391 SLEEARERAYEAVEYIKFEG 410 (423)
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999987
No 39
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=7.2e-32 Score=341.62 Aligned_cols=379 Identities=17% Similarity=0.194 Sum_probs=263.7
Q ss_pred EEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG-~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+|.....++.++++.+ ++++ ++ + +..+.....++.+.+ ++.|.+.|+++|+
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i-----------~~--~--~~n~g~~~~~~~~~~-------~~~d~~~l~~~~~ 59 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKV-----------YV--A--PGNAGTALLAENVVI-------DVTDIEALVAFAK 59 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE-----------EE--e--CCCHHHHhhccccCC-------CCCCHHHHHHHHH
Confidence 8999999998888999998864 3332 33 1 112333333333222 4578999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++|+|++|.+... ...+.+.|++.|++++||++++++.++||..+|++++++|||+|+|..
T Consensus 60 ~~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (420)
T PRK00885 60 EEGIDLTVVGPEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYET---------------- 122 (420)
T ss_pred HhCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999998843221 123456788899999999999999999999999999999999999876
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhie 284 (2267)
+.+.+++.++++++|||+||||..|+||+|+++|+|.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~s 194 (420)
T PRK00885 123 -------FTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEAS 194 (420)
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEE
Confidence 778999999999999999999999999999999999999999999876432 2458999999987 8999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEE------------EecCCCCCCHHHHHHHHH-HHHHHHH---HcC--ceeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKLEQ-AARRLAK---CVN--YVGAA 346 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKii------------eeaPa~~l~~e~~~eL~~-~A~rla~---aLG--y~Ga~ 346 (2267)
|.++.|+. .+..+. ..+.|++.. ...|++.++++..+++.+ .+.++.+ ++| |+|+.
T Consensus 195 v~~~~~g~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~ 268 (420)
T PRK00885 195 FFAFVDGE-NVLPLP-----TAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVL 268 (420)
T ss_pred EEEEECCC-ceEece-----eeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEE
Confidence 99999763 444332 122222221 235666677777666654 5555444 444 67999
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2267)
++||+++ ++++|++|+|||+++. +......++.|+.+++++++.|.+... ++
T Consensus 269 ~ve~~~t--~~g~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~-------------------------~~ 321 (420)
T PRK00885 269 YAGLMIT--KDGPKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLDEV-------------------------EL 321 (420)
T ss_pred EEEEEEE--CCCcEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCCCC-------------------------Cc
Confidence 9999999 5679999999999864 434445567899999999999965421 11
Q ss_pred CCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEE-Eeee-eCCcccccCCcccEEEEEEeCCH
Q 000092 426 PFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAY-FSVK-SGGGIHEFSDSQFGHVFAFGESR 503 (2267)
Q Consensus 426 ~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~-~~v~-~G~~i~~~~Ds~~g~via~G~~r 503 (2267)
.|. +...-+.+++.+.|+++|..+.. |..+ +...++.++ .++. .++.+. ...+++++|++.|+|+
T Consensus 322 ~~~-----~~~a~~~~~~~~gy~~~~~~~~~-----i~~~--~~~~~~~~~~~~~~~~~~~~~-~~g~R~~~vi~~g~t~ 388 (420)
T PRK00885 322 EWD-----DRAAVGVVLAAKGYPGDYRKGDV-----ITGL--EAADADKVFHAGTKLEDGKLV-TNGGRVLCVTALGDTL 388 (420)
T ss_pred eEC-----CCcEEEEEEeCCCCCCCCCCCCE-----eecc--cccCCCEEEECceeccCCeEE-EeCCEEEEEEEecCCH
Confidence 111 00001222222333333322211 1111 100111111 1222 112211 2336799999999999
Q ss_pred HHHHHHHHHhhcceEEec
Q 000092 504 ALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 504 eeA~~~l~~AL~el~I~G 521 (2267)
+||++++.++++.+++.|
T Consensus 389 ~eA~~~a~~~~~~i~~~~ 406 (420)
T PRK00885 389 EEAQKRAYAALDKIDFDG 406 (420)
T ss_pred HHHHHHHHHHHhccCCCC
Confidence 999999999999999987
No 40
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.6e-31 Score=362.43 Aligned_cols=375 Identities=13% Similarity=0.166 Sum_probs=286.4
Q ss_pred ccEEEEECch--HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-hccEEEEccCCCCCCCccCHHHHH
Q 000092 48 IHSILIANNG--MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-IADQFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 48 ~kkVLIan~G--~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr-~ADe~v~vp~~~~~~~Y~dvd~Il 124 (2267)
.++|++++.+ ..+..++++++++||+++ .+.++. ...++.+ .+|+.+.. ++.|.+.|+
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi-----------~v~~~~-~~~~~~~~~~~~~~~~-------d~~d~~~l~ 62 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPY-----------FLTANR-GKYPFLDAIRVVTISA-------DTSDPDRIH 62 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEE-----------EEeCCc-hhhchhhhcceeEEEc-------CCCCHHHHH
Confidence 4678888864 355778999999999986 221121 1223333 46776665 457889999
Q ss_pred HHHHHc-CCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 125 EMAEMT-RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 125 ~iA~~~-~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++++. .+++|+++.+...+ ..+..++..| ++|++++++..++||..++++++++|||+|+|..
T Consensus 63 ~~~~~~~~i~~V~~~se~~v~--~aa~lae~lg--lpg~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~----------- 127 (887)
T PRK02186 63 RFVSSLDGVAGIMSSSEYFIE--VASEVARRLG--LPAANTEAIRTCRDKKRLARTLRDHGIDVPRTHA----------- 127 (887)
T ss_pred HHHHhcCCCCEEEeCchhhHH--HHHHHHHHhC--cCCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE-----------
Confidence 999997 68999988443222 2335555567 5589999999999999999999999999999876
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+.+++.++++.+|||+||||..|+||+||++|+|.+|+.++++.+... ...+++||+|++| .|+
T Consensus 128 ------------v~~~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~-~~~~~lvEEfI~G-~E~ 193 (887)
T PRK02186 128 ------------LALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRA-GTRAALVQAYVEG-DEY 193 (887)
T ss_pred ------------eCCHHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhc-CCCcEEEeecccC-CcE
Confidence 67888998888999999999999999999999999999999999887643 3568999999988 799
Q ss_pred eEEEEEcCCCCEE-EecccccccccccceEEE---ecCCCCCCHHHHHHHHHHHHHHHHHcCce-eeeEEEEEEEccCCc
Q 000092 284 EVQLLCDQYGNVA-ALHSRDCSVQRRHQKIIE---EGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYSMETGE 358 (2267)
Q Consensus 284 eVqvl~D~~G~vi-~l~~Rdcsvqrr~qKiie---eaPa~~l~~e~~~eL~~~A~rla~aLGy~-Ga~tVEfl~d~~~g~ 358 (2267)
+|+++.+..+..+ .+..+... .....++ ..|+. ++++..+++.+.+.++++++|+. |++|+||+++ +++
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~---~~~~~ve~g~~~P~~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t--~~g 267 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLG---PPPHFVEIGHDFPAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVR--GDT 267 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecC---CCCCeEEeccccCCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEE--CCC
Confidence 9999987644332 22221111 1122333 34665 77888999999999999999996 9999999998 578
Q ss_pred EEEeeeCccCcCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCC
Q 000092 359 YYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTR 436 (2267)
Q Consensus 359 ~yfLEINpRlqgeh--pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~ 436 (2267)
+||+|+|||++|.+ .+++.++|+|+++++++.++|.++... +.
T Consensus 268 ~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i~~~lG~~~~~~-----------------------------------~~ 312 (887)
T PRK02186 268 VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVAAFAD-----------------------------------PT 312 (887)
T ss_pred EEEEEECCCCCCccHHHHHHHHHCcCHHHHHHHHhCCCCCCCC-----------------------------------CC
Confidence 99999999999985 468889999999999999999876420 11
Q ss_pred CceE-EEEEEEccCCCCCCCCCCCCcccccccc-----CCCcEEEEEeeeeCCcccccCC--cccEEEEEEeCCHHHHHH
Q 000092 437 PKGH-CVAVRVTSEDPDDGFKPTSGKVQELSFK-----SKPNVWAYFSVKSGGGIHEFSD--SQFGHVFAFGESRALAIA 508 (2267)
Q Consensus 437 ~~Gh-ai~aRI~aEdp~~~F~Ps~G~i~~l~~~-----s~~~V~~~~~v~~G~~i~~~~D--s~~g~via~G~~reeA~~ 508 (2267)
+.+| ++.+.+ + |..|+|..+.+. ..+.+.....+++|..++..-| +++|+|+++|+|++++.+
T Consensus 313 ~~~~~ai~~~~-~--------~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~g~vi~~g~~~~e~~~ 383 (887)
T PRK02186 313 AKRYGAIRFVL-P--------ARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAA 383 (887)
T ss_pred CCCeEEEEEEe-c--------CCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCccEEEEEEcCCHHHHHH
Confidence 1233 333333 2 235888776542 2345555566889999877644 679999999999999999
Q ss_pred HHHHhhcceEEe
Q 000092 509 NMVLGLKEIQIR 520 (2267)
Q Consensus 509 ~l~~AL~el~I~ 520 (2267)
++.++.+.++|+
T Consensus 384 ~~~~~~~~l~~~ 395 (887)
T PRK02186 384 AAERAVAGLSID 395 (887)
T ss_pred HHHHHHhcCEEE
Confidence 999999999885
No 41
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3.9e-31 Score=334.63 Aligned_cols=384 Identities=14% Similarity=0.164 Sum_probs=271.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|++||||+|+|.-...++.++++.|++++ +++.. .|......++.++.+ +..|.+.|+++
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~-----------~~~~~--~Npg~~~~a~~~~~~-------~~~d~e~l~~~ 60 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILF-----------SVIGH--ENPSIKKLSKKYLFY-------DEKDYDLIEDF 60 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEE-----------EEECC--CChhhhhcccceeec-------CCCCHHHHHHH
Confidence 57899999999999999999999997765 33222 344445667765544 34678999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|++|.+.... ..+...+++.|++.+||+.++++.++||..+|++++++|||+|+++.
T Consensus 61 ~~~~~id~Vi~~~d~~l~-~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~-------------- 125 (435)
T PRK06395 61 ALKNNVDIVFVGPDPVLA-TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFN-------------- 125 (435)
T ss_pred HHHhCCCEEEECCChHHH-HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccc--------------
Confidence 999999999999653221 13445667789999999999999999999999999999999987543
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH-HHHHHHHHHHHhh-CCCCcEEEEEeccccceee
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND-DEVRALFKQVQGE-VPGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~-eEL~~a~~~~~~e-~~~~~I~VEeyI~g~rhie 284 (2267)
.+.+.+++..++.+++|||||||+.++||+||++|.+. +++.+++..+... ..+.+++||||++| .|++
T Consensus 126 --------~~~~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G-~E~S 196 (435)
T PRK06395 126 --------ACFSEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG-EEFS 196 (435)
T ss_pred --------eeCChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC-ceEE
Confidence 04466788887888899999999999999999999643 3344444444432 33568999999987 6999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEEe------------c----CCCCCCHHHHHHHHHHHHHHHHHcC-----ce
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEE------------G----PITVAPLETVKKLEQAARRLAKCVN-----YV 343 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiiee------------a----Pa~~l~~e~~~eL~~~A~rla~aLG-----y~ 343 (2267)
|+++.|+. ++..+. +-+.|.+..+. + |.+.++++..+++.+.+.+++++|+ |+
T Consensus 197 vd~~~dg~-~~~~l~-----~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~ 270 (435)
T PRK06395 197 LQAFSDGK-HLSFMP-----IVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFK 270 (435)
T ss_pred EEEEEcCC-eEEEec-----ccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 99999864 333321 22233332221 1 3445889999999999999999999 78
Q ss_pred eeeEEEEEEEccCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 344 GAATVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
|+.++||+++ ++++|+||+|+|++.- ..+.-...+.|+..+.+.++.| +|..
T Consensus 271 G~l~~~~~lt--~~gp~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g-~l~~------------------------ 323 (435)
T PRK06395 271 GIMYGQFMDT--PNGVKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG-NLNG------------------------ 323 (435)
T ss_pred EEEEEEEEEe--CCCcEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC-CCCC------------------------
Confidence 9999999998 6779999999999943 3333234589999999999999 5531
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEE-EEeeee-CCcccccCCcccEEEEEEe
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWA-YFSVKS-GGGIHEFSDSQFGHVFAFG 500 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~-~~~v~~-G~~i~~~~Ds~~g~via~G 500 (2267)
.+.|. ....-+.++...-|+++ |..|.|........+++.+ +.++.. .+.+ ....+++++|++.|
T Consensus 324 -~~~~~-----~~~~~~~~l~~~gYp~~------~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~-~s~ggRv~~vv~~g 390 (435)
T PRK06395 324 -SIKFE-----RKATVLKYIVPPGYGEN------PSPGRIKIDKTIFDSNSDVYYASVSGTLNDV-KTSGSRSLAIIAKG 390 (435)
T ss_pred -Cceec-----CCCEEEEEEecCCCCCC------CCCCceeccccccCCCCEEEEeeccccCCCe-EECCCcEEEEEEEc
Confidence 11221 00112333333333333 3445554221111244433 333321 1122 22456799999999
Q ss_pred CCHHHHHHHHHHhhcceEEec
Q 000092 501 ESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 501 ~~reeA~~~l~~AL~el~I~G 521 (2267)
+|+++|++++.++++.++ .|
T Consensus 391 ~~~~eA~~~a~~~~~~I~-~~ 410 (435)
T PRK06395 391 DSIPEASEKVDSDLNAVH-GS 410 (435)
T ss_pred CCHHHHHHHHHHHHhccC-CC
Confidence 999999999999999998 55
No 42
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=4.2e-31 Score=333.81 Aligned_cols=383 Identities=19% Similarity=0.186 Sum_probs=273.0
Q ss_pred EEECchHHHHHHHHHHHHcC--CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 52 LIANNGMAAVKFIRSIRTWA--YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 52 LIan~G~~Av~iIrsaR~lG--~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||+|+|.-.-.+..++++-. .+++ +.| ..+....+++.+.+|. -++.|.+.|+++|++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~-----------~~p-----gn~g~~~~~~~~~vp~----~~~~d~~~l~~~a~~ 60 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVF-----------CAP-----GNAGIATSGDATCVPD----LDISDSAAVISFCRK 60 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEE-----------ECC-----CCHHHhhhccceeecC----CCCCCHHHHHHHHHH
Confidence 68898877666777776654 2222 332 2356666677666653 256778999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
+++|.|++|+..... +.+.+.|++.|++++||+.++++.++||..+|++++++|||||+|..
T Consensus 61 ~~id~vvvg~E~~lv-~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~----------------- 122 (434)
T PLN02257 61 WGVGLVVVGPEAPLV-AGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYET----------------- 122 (434)
T ss_pred cCCCEEEECCchHHH-HHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEE-----------------
Confidence 999999999543222 25667888899999999999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccceeeE
Q 000092 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rhieV 285 (2267)
+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+... ..+.+++||+|++| +|++|
T Consensus 123 ------~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv 195 (434)
T PLN02257 123 ------FTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASF 195 (434)
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEE
Confidence 67889999999999999999999999999999999999999999887432 12468999999988 59999
Q ss_pred EEEEcCCCCEEEecccccccccccceEE------------EecCCCCCCHHHHHHH-HHHHHHH---HHH--cCceeeeE
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKL-EQAARRL---AKC--VNYVGAAT 347 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~qKii------------eeaPa~~l~~e~~~eL-~~~A~rl---a~a--LGy~Ga~t 347 (2267)
+++.|+. +++.+. ..| .|+++. ..+|++.+++++.+++ ++.+.++ .++ +.|+|+.+
T Consensus 196 ~~~~dG~-~~~pl~----~~~-dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ 269 (434)
T PLN02257 196 FALVDGE-NAIPLE----SAQ-DHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLY 269 (434)
T ss_pred EEEECCC-cEEEEE----eee-ecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999854 555542 233 243333 2467777888888875 4444444 334 45679999
Q ss_pred EEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccC
Q 000092 348 VEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATP 426 (2267)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~ 426 (2267)
+||+++.+++++||||+|+|+|. |+.++...++.||++++++++.|.... + ++.
T Consensus 270 ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~~-~------------------------~~~ 324 (434)
T PLN02257 270 AGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELSG-V------------------------SLT 324 (434)
T ss_pred EEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCCCC-C------------------------Cce
Confidence 99999843677999999999995 466676679999999999999995321 1 122
Q ss_pred CCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccC--CCcEEEEE-eee--eCCcccccCCcccEEEEEEeC
Q 000092 427 FDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKS--KPNVWAYF-SVK--SGGGIHEFSDSQFGHVFAFGE 501 (2267)
Q Consensus 427 f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s--~~~V~~~~-~v~--~G~~i~~~~Ds~~g~via~G~ 501 (2267)
|+ ....-+.+++..-|+..+..++ .|..+.-.. .+++.++. ++. .++.+. ...+++..|+++|+
T Consensus 325 ~~-----~~~av~vv~a~~gYp~~~~~g~-----~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-t~ggRvl~v~~~g~ 393 (434)
T PLN02257 325 WS-----PDSAMVVVMASNGYPGSYKKGT-----VIKNLDEAEAVAPGVKVFHAGTALDSDGNVV-AAGGRVLGVTAKGK 393 (434)
T ss_pred EC-----CCceEEEEEcCCCCCCCCCCCC-----EeeCCccccccCCCCEEEECCceEccCCEEE-ECCCeEEEEEEecC
Confidence 22 0011223333333333332221 122121101 13433332 222 122222 23466899999999
Q ss_pred CHHHHHHHHHHhhcceEEec
Q 000092 502 SRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G 521 (2267)
|.++|++++.++++.+++.|
T Consensus 394 ~~~~A~~~ay~~~~~i~~~~ 413 (434)
T PLN02257 394 DIAEARARAYDAVDQIDWPG 413 (434)
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999998
No 43
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=9.2e-32 Score=371.07 Aligned_cols=325 Identities=21% Similarity=0.319 Sum_probs=263.7
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
..+||||+|.|. .++.+++++|++||+++ .+..++...+.....||+.|..|
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI-----------~vn~npetvs~~~~~aD~~y~ep------ 616 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETI-----------MINNNPETVSTDYDTADRLYFEP------ 616 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEE-----------EEeCCccccccccccCceEEEcc------
Confidence 468999999986 36789999999999986 44334334455666799988765
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
.+.+.|+++++++++|+|+|++|.... ..++..|++.|+.++|++++++..+.||..++++++++|||+|+|..
T Consensus 617 --~~~e~vl~I~~~e~~dgVI~~~g~~~~-~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~--- 690 (1068)
T PRK12815 617 --LTLEDVLNVAEAENIKGVIVQFGGQTA-INLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLT--- 690 (1068)
T ss_pred --CCHHHHHHHHhhcCCCEEEEecCcHHH-HHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEE---
Confidence 347999999999999999998876532 34678888999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+.+.+++.++++++||||||||+.++||+|+++|+|.+||..+++.+ .....+++||+
T Consensus 691 --------------------~~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~--~s~~~~vlIee 748 (1068)
T PRK12815 691 --------------------ATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAEN--ASQLYPILIDQ 748 (1068)
T ss_pred --------------------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHh--hcCCCCEEEEE
Confidence 78999999999999999999999999999999999999999999987 34567899999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccc--cc-eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr--~q-KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
|++| .|++|++++|+.. ++.....+. +.+. |. ......|+..++++..++|++.+.++++++|++|++++||++
T Consensus 749 fI~G-~E~~Vd~i~dg~~-v~i~~i~e~-~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v 825 (1068)
T PRK12815 749 FIDG-KEYEVDAISDGED-VTIPGIIEH-IEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVL 825 (1068)
T ss_pred eecC-ceEEEEEEEcCCc-eEEeeEEEE-eeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEE
Confidence 9976 6999999999743 322211110 0010 10 011223555688899999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCch-------------------hhhhcccccCCCc
Q 000092 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP-------------------EIRRFYGMEHGGV 413 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ip-------------------dir~~yg~~~~~~ 413 (2267)
+ ++++|+||+|||+++..|+.+.++|+|++++.+++++|.++..+. ...+|.|.|+. |
T Consensus 826 ~--~~~~yviEiNpR~s~t~~~~skatGv~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p~f~f~~~~~~~~~-l 902 (1068)
T PRK12815 826 A--NDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKSLAELGYPNGLWPGSPFIHVKMPVFSYLKYPGVDNT-L 902 (1068)
T ss_pred E--CCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhhcccccccCCCCCeEEEEeccCChhHcccCCCc-c
Confidence 8 688999999999999999999999999999999999999876431 13344455554 4
Q ss_pred ccccccccc
Q 000092 414 YDAWRKTSV 422 (2267)
Q Consensus 414 ~~~~~~~~~ 422 (2267)
+++||++|+
T Consensus 903 g~~m~stGe 911 (1068)
T PRK12815 903 GPEMKSTGE 911 (1068)
T ss_pred CCcceEcce
Confidence 567777664
No 44
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.3e-31 Score=368.40 Aligned_cols=305 Identities=20% Similarity=0.344 Sum_probs=253.1
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
..+||||+|+|. .++++++++|++||+++ .+..++..-+....+||+.|..|
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi-----------~v~~npetvs~~~~~aD~~y~e~------ 615 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETI-----------MVNCNPETVSTDYDTSDRLYFEP------ 615 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEE-----------EEeCCccccccccchhhheeecC------
Confidence 468999999987 46889999999999986 44222222334467899877654
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
.+.+.++++++++++|+|++.+|..... .++..|++.|+.++|++++++..+.||..++++++++|||+|+|..
T Consensus 616 --~~~e~v~~i~~~e~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~--- 689 (1066)
T PRK05294 616 --LTLEDVLEIIEKEKPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGT--- 689 (1066)
T ss_pred --CCHHHHHHHHHHcCCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEE---
Confidence 2489999999999999999876644432 4678899999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+.+.+++.++++++||||||||+.|+||+|+.+|+|.+||..+++.+.....+.+++||+
T Consensus 690 --------------------~~s~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEe 749 (1066)
T PRK05294 690 --------------------ATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDK 749 (1066)
T ss_pred --------------------ECCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 778999999999999999999999999999999999999999999887666678999999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccc--cc-eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr--~q-KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
|++|.+|++|++++|+. +++.....+. +.+. |. ......|+..++++..++|.+.+.++++++|+.|+++|||++
T Consensus 750 fI~G~~E~sV~~v~dg~-~v~i~~i~e~-i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~ 827 (1066)
T PRK05294 750 FLEGAIEVDVDAICDGE-DVLIGGIMEH-IEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAV 827 (1066)
T ss_pred cCCCCEEEEEEEEecCC-eEEEeeeEEe-eeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEE
Confidence 99987799999999865 2332211000 0000 10 011224655688899999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
+ ++++|++|+|||+++..|+++.++|+|++++.+++++|.++..
T Consensus 828 ~--~~~~yViEiNpR~s~t~~~~s~atGi~~~~~~~~~~lG~~l~~ 871 (1066)
T PRK05294 828 K--DDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAE 871 (1066)
T ss_pred E--CCeEEEEEEecCCCccHHHHHHHhCccHHHHHHHHHcCCChhh
Confidence 8 7899999999999999999999999999999999999998864
No 45
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.98 E-value=4.5e-30 Score=324.29 Aligned_cols=380 Identities=16% Similarity=0.154 Sum_probs=268.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
..||||+|+|.-...++.++++.++.+. +.+.|. |......+- ...++ -++.|.+.|+++|
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~---------~~~~pg----n~g~~~~~~-~~~~~-----~~~~d~~~l~~~a 64 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSE---------LKVFPG----NGGFPDDEL-LPADS-----FSILDKSSVQSFL 64 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCE---------EEEECC----chHHhcccc-ccccC-----cCcCCHHHHHHHH
Confidence 4699999999999999999999885542 123332 221111110 11111 2668999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCc---hHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 128 EMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
+++++|.|++|. |++. +++.|++.|++++||+..++++++||..+|++++++|||+|+|..
T Consensus 65 ~~~~iD~Vv~g~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~------------ 128 (426)
T PRK13789 65 KSNPFDLIVVGP----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKT------------ 128 (426)
T ss_pred HHcCCCEEEECC----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEe------------
Confidence 999999999984 4433 557788899999999999999999999999999999999999865
Q ss_pred ccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~ 280 (2267)
+++.+++.+++++++||+||||..++||+||++|++.+|+.++++.+.... .+..++||+|++|
T Consensus 129 -----------~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G- 196 (426)
T PRK13789 129 -----------FTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG- 196 (426)
T ss_pred -----------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-
Confidence 678999999999999999999999999999999999999999999886432 2357999999988
Q ss_pred ceeeEEEEEcCCCCEEEecccccccccccceE------------EEecCCCCCCHHHHHHHHH-HHHHHH---HHcC--c
Q 000092 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKLEQ-AARRLA---KCVN--Y 342 (2267)
Q Consensus 281 rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi------------ieeaPa~~l~~e~~~eL~~-~A~rla---~aLG--y 342 (2267)
+|++|.++.|+. +++.+.. . +.|++. ...+|++.+++++.+++.+ .+.+++ ++.| |
T Consensus 197 ~E~Sv~~~~dg~-~~~~lp~----~-~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~ 270 (426)
T PRK13789 197 QEASIFAISDGD-SYFLLPA----A-QDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPY 270 (426)
T ss_pred eEEEEEEEECCC-EEEEccc----e-EecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 799999999853 4433321 1 123222 2356887778888888764 444555 4445 8
Q ss_pred eeeeEEEEEEEccCCcEEEeeeCccCcCCcceeh---hhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccc
Q 000092 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTE---WIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRK 419 (2267)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE---~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~ 419 (2267)
+|+.++||++++ +|++||||+|||++. |.++ ...+.||.+++++.+.|.... +
T Consensus 271 ~Gvl~~e~~it~-~g~~~vlE~n~R~Gd--pe~~~ll~~l~~dl~~~~~~~~~g~l~~-~-------------------- 326 (426)
T PRK13789 271 RGLLYAGLMISP-EGEPKVVEFNCRFGD--PETQCVLAMLDGDLLELLYAASTGKIKV-V-------------------- 326 (426)
T ss_pred eEEEEEEEEEcC-CCCEEEEEEecCCCC--cHhhhhhccCCCCHHHHHHHHHcCCCCC-C--------------------
Confidence 999999999983 567999999999963 2222 123579999999999995221 0
Q ss_pred ccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccccCCCcEEEEE-eee-eCCcccccCCcccEEE
Q 000092 420 TSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHV 496 (2267)
Q Consensus 420 ~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~-i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~v 496 (2267)
.+.|. .+.++...+.++..- ..+..|. |. +.-...+++.++. ++. .++.+. .+..+...|
T Consensus 327 ----~~~~~---------~~~s~~vv~a~~gyp--~~~~~g~~i~-~~~~~~~~~~if~a~~~~~~~~~~-t~ggRvl~v 389 (426)
T PRK13789 327 ----NLKLK---------QGAAAVVVLAAQGYP--DSYEKNIPLN-LPETSGQNVVLFHAGTKKKDGKVF-SSGGRILGI 389 (426)
T ss_pred ----Cceec---------CCceEEEEECcCCcC--CCcCCCCEEe-ccCcCCCCcEEEEeeeeeeCCEEE-eCCCeEEEE
Confidence 11221 123333333332210 1122343 22 2211113544442 332 223222 345668889
Q ss_pred EEEeCCHHHHHHHHHHhhcceEEec
Q 000092 497 FAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 497 ia~G~~reeA~~~l~~AL~el~I~G 521 (2267)
++.|+|.+||++++.++++.+++.|
T Consensus 390 ~~~g~~~~~A~~~ay~~~~~i~~~~ 414 (426)
T PRK13789 390 VAQGKDLKDSVDQAYSFLEKIQAPK 414 (426)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999988
No 46
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.98 E-value=8.1e-31 Score=321.04 Aligned_cols=293 Identities=20% Similarity=0.300 Sum_probs=239.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcC--CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWA--YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG--~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
|.||||+|.|... .+++++++.| |+++ ++ |.++.+++.++||+++.+|... ...| ++.+++
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi-----------~~--d~~~~~~~~~~~d~~~~~p~~~-~~~~--~~~l~~ 63 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVI-----------GA--DISELAPALYFADKFYVVPKVT-DPNY--IDRLLD 63 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEE-----------EE--CCCCcchhhHhccCcEecCCCC-ChhH--HHHHHH
Confidence 5799999988666 8899999995 7775 55 5567888899999999987542 2344 789999
Q ss_pred HHHHcCCCEEEeCCCcCCC-CCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 126 MAEMTRVDAVWPGWGHASE-IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sE-n~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
+++++++|+|+|+++.... -....+.+++.|+.++||+++++..+.||..++++++++|+|+|+|..
T Consensus 64 ~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------ 131 (326)
T PRK12767 64 ICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYL------------ 131 (326)
T ss_pred HHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEc------------
Confidence 9999999999998653321 112345677789999999999999999999999999999999999765
Q ss_pred ccCcccccccccCCHHHHHH--HHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccce
Q 000092 205 TIPDDVYRQACVYTTEEAIA--SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~--~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rh 282 (2267)
+++.+++.+ ..++++||+|+||..|+||+|+++|+|.+|+.++++.. .+++||+|++| ++
T Consensus 132 -----------~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~------~~~lvqeyi~G-~e 193 (326)
T PRK12767 132 -----------PESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV------PNLIIQEFIEG-QE 193 (326)
T ss_pred -----------ccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC------CCeEEEeccCC-ce
Confidence 677888877 55789999999999999999999999999999988764 38999999976 89
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++.++.+.+|+++.++.+.....+... .. +.... ..+++.+.+.++++++||.|.+++||+++ +|++|||
T Consensus 194 ~~v~~~~~~~G~~~~~~~~~~~~~~~g~-~~---~~~~~---~~~~i~~~~~~i~~~lg~~G~~~vd~~~~--~g~~~vi 264 (326)
T PRK12767 194 YTVDVLCDLNGEVISIVPRKRIEVRAGE-TS---KGVTV---KDPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLF 264 (326)
T ss_pred EEEEEEEcCCCCEEEEEEeeeeeecCCc-ee---EEEEc---CCHHHHHHHHHHHHhcCCeeeEEEEEEEE--CCeEEEE
Confidence 9999999877998877655432111110 00 00001 12678899999999999999999999999 5889999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
|+|||+++.++++ ..+|+|++++.++.++|.+++
T Consensus 265 EiNpR~~g~~~~~-~~~G~n~~~~~~~~~~g~~~~ 298 (326)
T PRK12767 265 EINPRFGGGYPLS-YMAGANEPDWIIRNLLGGENE 298 (326)
T ss_pred EEeCCCCCcchhh-HhhCCCHHHHHHHHHcCCCCC
Confidence 9999999988765 469999999999999999875
No 47
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.98 E-value=1.4e-30 Score=325.11 Aligned_cols=334 Identities=17% Similarity=0.198 Sum_probs=244.1
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
++.|.+.|+++|+++++|+|++|.+.... ..+.+.|++.|+.++||++++++.++||..+|++++++|||+|+|..
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l~-~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~--- 87 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPLI-DGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKE--- 87 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHHH-HHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEE---
Confidence 56789999999999999999998654222 23557888899999999999999999999999999999999999865
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+.+.+++.++++++|||+||||..|+||+||++|+|.+|+.++++.+.......+++||+
T Consensus 88 --------------------~~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe 147 (379)
T PRK13790 88 --------------------VERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFET 147 (379)
T ss_pred --------------------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 678889999999999999999999999999999999999999999876433345899999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccccc------e-----EEEecCCCCCCHHHHHHH-HHHHHHHHHHc---
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ------K-----IIEEGPITVAPLETVKKL-EQAARRLAKCV--- 340 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~q------K-----iieeaPa~~l~~e~~~eL-~~~A~rla~aL--- 340 (2267)
|++| +|++|.++.|+.. .+.+ +|..|.+.. + .....|++.++++..+++ ++.+.+++++|
T Consensus 148 ~i~G-~E~sv~~~~~g~~-~~~~---~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~ 222 (379)
T PRK13790 148 FLEG-EEFSLMTFVNGDL-AVPF---DCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNE 222 (379)
T ss_pred cccC-ceEEEEEEeeCCE-EEec---ccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9988 7999999998542 2221 233332111 0 112346666777776655 66667776666
Q ss_pred C--ceeeeEEEEEEEccCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccc
Q 000092 341 N--YVGAATVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAW 417 (2267)
Q Consensus 341 G--y~Ga~tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~ 417 (2267)
| |.|+.++||+++ ++++|++|+|+|+++- ..++...+|+|+.+.+++++.|.++..
T Consensus 223 g~~~~Gvl~~e~~lt--~~g~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~------------------- 281 (379)
T PRK13790 223 GYQFFGVLYIGAILT--KDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEF------------------- 281 (379)
T ss_pred CCCceeEEEEEEEEe--CCCeEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCce-------------------
Confidence 4 479999999998 4569999999999762 334444579999999999999976531
Q ss_pred ccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCcccEEE
Q 000092 418 RKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHV 496 (2267)
Q Consensus 418 ~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~v 496 (2267)
.| .+....|-+++.+.|+++|..+ +.|..+.. .+...+.++. .++.+. ...++++.|
T Consensus 282 --------~~-----~~~~~~~v~~~s~gyp~~~~~~-----~~i~~~~~---~~~~~~~~~~~~~~~~~-~~ggRv~~v 339 (379)
T PRK13790 282 --------KW-----KNESIVGVMLASKGYPDAYEKG-----HKVSGFDL---NENYFVSGLKKQGDTFV-TSGGRVILA 339 (379)
T ss_pred --------eE-----cCCCEEEEEEccCCCCCCCCCC-----CeeeecCC---CCeEEECCccccCCeEE-ECCCeEEEE
Confidence 11 1112235555555565544332 22222211 1111122222 111111 123568899
Q ss_pred EEEeCCHHHHHHHHHHhhcceEEec
Q 000092 497 FAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 497 ia~G~~reeA~~~l~~AL~el~I~G 521 (2267)
++.|+|.+||++++.++++.+++.|
T Consensus 340 ~~~g~~~~~a~~~~~~~~~~i~~~~ 364 (379)
T PRK13790 340 IGKGDNVQDAQRDAYEKVSQIQSDH 364 (379)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999988
No 48
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.97 E-value=7.6e-29 Score=298.56 Aligned_cols=301 Identities=18% Similarity=0.259 Sum_probs=254.0
Q ss_pred chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEE
Q 000092 56 NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAV 135 (2267)
Q Consensus 56 ~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV 135 (2267)
..-.+...++++|+.||+|+ .+.+.+..-..-..+||++|..|. ..+.+..+++++++|++
T Consensus 14 fdysG~qac~aLkeeg~~vv-----------lvnsnpAti~td~e~AD~~y~eP~--------~~E~v~~Ii~~E~~Dai 74 (400)
T COG0458 14 FDYSGTQACKALKEEGYGVV-----------LVNSNPATIMTDPELADKVYIEPI--------TKEPVEKIIEKERPDAI 74 (400)
T ss_pred echhHHHHHHHHHhcCCeEE-----------EEcCCCccccCCchhcceeeeecC--------cHHHHHHHHHhcCccee
Confidence 34566777899999999987 342333333333479999999984 37889999999999999
Q ss_pred EeCCCcCCC-CCchH----HHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 136 WPGWGHASE-IPELP----DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 136 ~pG~G~~sE-n~~la----~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
+|+.|.... |..+. -.|++.|+.++|.+++++..+.||..++.++.+.|+|+| +.
T Consensus 75 lp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P--~~------------------ 134 (400)
T COG0458 75 LPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP--SR------------------ 134 (400)
T ss_pred ecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC--cc------------------
Confidence 999886553 32111 123445999999999999999999999999999999999 22
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEc
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD 290 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D 290 (2267)
..++.+++.+..+.+||||||||+.+.||.|..+++|.+||.+........++..++++|+++.|..|++..++.|
T Consensus 135 ----~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd 210 (400)
T COG0458 135 ----IAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRD 210 (400)
T ss_pred ----ccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEe
Confidence 1678999999999999999999999999999999999999999999988888888999999999999999999999
Q ss_pred CCCCEEEecccccc--cccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccC
Q 000092 291 QYGNVAALHSRDCS--VQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2267)
Q Consensus 291 ~~G~vi~l~~Rdcs--vqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2267)
.+++++.+...... .-.+.-..+..+|+..+++...+.++.++.++++.+|..|.++++|.+++.++++||+|+|||+
T Consensus 211 ~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRv 290 (400)
T COG0458 211 GKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRV 290 (400)
T ss_pred CCCCEEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCc
Confidence 99999877333211 1222345667899999999888889999999999999999999999999877899999999999
Q ss_pred cCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 369 qgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
+++..+.+++||..+......+|.|..++.+
T Consensus 291 SrssaLaskAtgypia~vaakla~g~~l~Ei 321 (400)
T COG0458 291 SRSSALASKATGYPIAKVAAKLAVGYTLDEI 321 (400)
T ss_pred CcchhhhhhccCChHHHHHHHhhcccCchhh
Confidence 9999999999999999999999999888764
No 49
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.97 E-value=5.8e-28 Score=308.02 Aligned_cols=380 Identities=15% Similarity=0.176 Sum_probs=256.5
Q ss_pred EEEEECchHHHHHHHHHHHHc--CCcccccccceeEEEEEeccCCCCCChhhhh----ccEEEEccCCCCCCCccCHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTW--AYETFGTEKAILLVAMATPEDMRINAEHIRI----ADQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~l--G~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~----ADe~v~vp~~~~~~~Y~dvd~I 123 (2267)
||||+|+|.-...++.++++. |++++ +++.. .|....+. +|+++.+ +..|.+.|
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~-----------~~~g~--~Npg~~~~~~~~~~~~~~~-------~~~d~~~l 61 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVY-----------ALSSY--LNPGINSVVKATGGEYFIG-------NINSPEEV 61 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEE-----------EEECC--CChhheeecccccCceEec-------CCCCHHHH
Confidence 899999999999999999998 77775 44332 23333332 3455555 44678999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCC---chHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC-CCCCCccCCC
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIP---ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP-WSGSHVKIPP 199 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~---~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp-~~~~~~~~~~ 199 (2267)
+++|+++++|+|++|. |.+ .+++.|++.|++++||+++++++++||..+|++++++|||+|+ |..
T Consensus 62 ~~~a~~~~id~Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~------- 130 (486)
T PRK05784 62 KKVAKEVNPDLVVIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKV------- 130 (486)
T ss_pred HHHHHHhCCCEEEECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceE-------
Confidence 9999999999999983 444 3457888999999999999999999999999999999999985 443
Q ss_pred CCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHH-----HHHHH----HHHHhh-----
Q 000092 200 ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE-----VRALF----KQVQGE----- 265 (2267)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eE-----L~~a~----~~~~~e----- 265 (2267)
+++.+++.++++.. +||||||+.++||+||++|++.++ +.+++ +.+...
T Consensus 131 ----------------~~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g 193 (486)
T PRK05784 131 ----------------FYDVEEAAKFIEYG-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYK 193 (486)
T ss_pred ----------------eCCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhcc
Confidence 67889998888665 699999999999999999999873 43444 333211
Q ss_pred CCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE------------ecC----CCCCCHHHHHHH
Q 000092 266 VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGP----ITVAPLETVKKL 329 (2267)
Q Consensus 266 ~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaP----a~~l~~e~~~eL 329 (2267)
..+.+++||||++| .|++|+++.|+. +++.+. .. +.|..+.+ .+| .+.++++..+++
T Consensus 194 ~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~l~----~~-qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~ 266 (486)
T PRK05784 194 DVEPKILVEEKVDG-VEYTLQVLTDGE-TVIPLP----LA-QDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEA 266 (486)
T ss_pred CCCCeEEEEEccCC-eEEEEEEEECCC-eEEEee----ee-EeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHH
Confidence 12568999999987 699999999863 333221 11 12333332 135 455666766666
Q ss_pred HHHHHHHHHHc----C--ceeeeEEEEEEEccCCcEEEeeeCccCcCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchh
Q 000092 330 EQAARRLAKCV----N--YVGAATVEYLYSMETGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPE 401 (2267)
Q Consensus 330 ~~~A~rla~aL----G--y~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh--pvtE~vtGvDL~~~qL~iA~G~pL~~ipd 401 (2267)
.+.+...++++ | |+|+.|+|++++. ++++++||+|+|++.-. .+... ++.||.++.+.++.|.. ..
T Consensus 267 ~~~v~~~l~al~~~~g~~~~G~l~~elmlt~-~~GP~vIE~n~R~Gdpe~~~llp~-l~~dl~~~~~~~~~g~l-~~--- 340 (486)
T PRK05784 267 VEIVKRTIDAIYKETGERYVGVISGQMMLTE-LWGPTVIEYYSRFGDPEASNIIPR-IESDFGELFELAATGKL-SK--- 340 (486)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEEEEec-CCCcEEEEEecccCCchHHHHHHh-ccCCHHHHHHHHHcCCC-CC---
Confidence 66666555444 3 4699999999972 45699999999999632 33333 56699999999999952 21
Q ss_pred hhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccc--cCCCcEEEEE-e
Q 000092 402 IRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSF--KSKPNVWAYF-S 478 (2267)
Q Consensus 402 ir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~--~s~~~V~~~~-~ 478 (2267)
..+.|. +...-+-++++.-|++. ..|..|....+.- ...+++.++. +
T Consensus 341 ---------------------~~~~~~-----~~~~~~vv~as~gYp~~----~~~~~g~~i~~~~~~~~~~~~~v~~ag 390 (486)
T PRK05784 341 ---------------------AKIKFN-----EEPSVVKAIAPLGYPLS----RDLASGRRIVVDLDKIKEEGCLVFFGS 390 (486)
T ss_pred ---------------------CCeeec-----CCceEEEEECCCCCCCc----ccCCCCCEEECCccccccCCCEEEECC
Confidence 112222 00111223333233322 1233343221110 0112222221 2
Q ss_pred ee-eCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce-EEec
Q 000092 479 VK-SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI-QIRG 521 (2267)
Q Consensus 479 v~-~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el-~I~G 521 (2267)
++ .++.+. ....++..|++.|+|.++|++++.++++.+ .+.|
T Consensus 391 ~~~~~~~~~-t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~ 434 (486)
T PRK05784 391 VELEGGQLI-TKGSRALEIVAIGKDFEEAYEKLERCISYVSSDTK 434 (486)
T ss_pred ceeeCCEEE-EcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCC
Confidence 22 122221 234558889999999999999999999999 8888
No 50
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.97 E-value=4.5e-28 Score=277.67 Aligned_cols=375 Identities=18% Similarity=0.225 Sum_probs=295.6
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
+|||.+|+|+.+..+.-.+.++|.+|+ ++ |...+||..+.|++.+.+ +-+|.+.|..+.+
T Consensus 13 ~kvmLLGSGELGKEvaIe~QRLG~eVi-----------AV--DrY~~APAmqVAhrs~Vi-------~MlD~~al~avv~ 72 (394)
T COG0027 13 TKVMLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSYVI-------DMLDGDALRAVVE 72 (394)
T ss_pred eEEEEecCCccchHHHHHHHhcCCEEE-----------Ee--cCcCCChhhhhhhheeee-------eccCHHHHHHHHH
Confidence 689999999999999999999999986 66 889999999999999998 5689999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+.+.|.|+|-..- -+.+-...+++.|+.++ |...+.+.+.|....|+++ +++|+||.+|..
T Consensus 73 rekPd~IVpEiEA--I~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~f--------------- 134 (394)
T COG0027 73 REKPDYIVPEIEA--IATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRF--------------- 134 (394)
T ss_pred hhCCCeeeehhhh--hhHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccc---------------
Confidence 9999999987432 23334566788999876 9999999999999999876 679999999877
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC--CcEEEEEeccccceeeE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG--SPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~--~~I~VEeyI~g~rhieV 285 (2267)
+.|.+|..+++++|||||++||..++.|||-.+|.++++++.+|+.++....+ +.++||+|++..-|+++
T Consensus 135 --------a~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTl 206 (394)
T COG0027 135 --------ADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITL 206 (394)
T ss_pred --------cccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEE
Confidence 78999999999999999999999999999999999999999999999876653 58999999987444444
Q ss_pred EEEEcCCCCEEEecccccccccccc----eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQ----KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~q----KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
-.++..+|+-. -|...-+.| ..-.+-|.. +++...++.+..|.++.++||-.|.+.||+++. .++.||
T Consensus 207 Ltvr~~~~~~~-----Fc~PIGHrq~dgdY~ESWQP~~-mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV~F 278 (394)
T COG0027 207 LTVRAVDGTGS-----FCAPIGHRQEDGDYRESWQPQE-MSEAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEVIF 278 (394)
T ss_pred EEEEEecCCCC-----cCCCcccccCCCChhcccCccc-cCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEEEE
Confidence 44444334322 143322222 223356776 888999999999999999999999999999999 789999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
-|+.||+....-+|-..-+++-.+++++..+|.|++.|+ . || +...|+
T Consensus 279 sEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLPi~~i~---~-~~----------------------------P~AS~v 326 (394)
T COG0027 279 SEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPIPEIR---Q-IS----------------------------PAASAV 326 (394)
T ss_pred eecCCCCCCCceEEEEeccchHHHHHHHHHhCCCcccee---e-ec----------------------------ccccce
Confidence 999999998877775556899999999999999987532 1 11 113566
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
|-+-.++.+|. -.|.-..+..|. ..|+.. |+...+-.-++|-.++++++-++|++++.++.+.+.|.+
T Consensus 327 I~~~~~~~~~~-----f~~l~~AL~~p~-t~vRlF------GKP~~~~~RRmGVALA~a~~Ve~Are~A~~aa~~i~v~~ 394 (394)
T COG0027 327 ILAQETSQAPT-----FDGLAEALGVPD-TQVRLF------GKPEADGGRRLGVALATAESVEEARERARKAASAIEVKG 394 (394)
T ss_pred eeccccccCCc-----hhhHHHHhcCCC-ceEEEe------cCCcccCCceeeEEEecCccHHHHHHHHHHHHhheecCC
Confidence 66666554431 134444454443 244443 111112223599999999999999999999999988753
No 51
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.96 E-value=3.1e-27 Score=281.60 Aligned_cols=295 Identities=20% Similarity=0.297 Sum_probs=254.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
+++|.|+|+|..+.++..+++++||+++ +. |.+++++..+.||..+.. .|.|.+.+.+++
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~-----------vL--dp~~~~PA~~va~~~i~~-------~~dD~~al~ela 60 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVI-----------VL--DPDADAPAAQVADRVIVA-------AYDDPEALRELA 60 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEE-----------Ee--cCCCCCchhhcccceeec-------CCCCHHHHHHHH
Confidence 4689999999999999999999999986 44 778999999999999876 678999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
.+. |+|. |.|..-+.+..+.|++.. .+-|++++++...||+..|.+++++|+|||||..
T Consensus 61 ~~~--DViT--~EfE~V~~~aL~~l~~~~--~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~--------------- 119 (375)
T COG0026 61 AKC--DVIT--YEFENVPAEALEKLAASV--KVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQV--------------- 119 (375)
T ss_pred hhC--CEEE--EeeccCCHHHHHHHHhhc--CcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEE---------------
Confidence 875 8888 555555555566676663 3349999999999999999999999999999987
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
+.+.+|+..+++++|||.|+|.+.|| .|||.+++.+.+++.......... +.+ ++|+|++..+|+||-
T Consensus 120 --------v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~~--~~~-vlE~fV~F~~EiSvi 188 (375)
T COG0026 120 --------VDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAEG--GVP-VLEEFVPFEREISVI 188 (375)
T ss_pred --------eCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhcc--Cce-eEEeecccceEEEEE
Confidence 88999999999999999999999988 999999999999988755543311 223 999999999999999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
+.++.+|++.++..- ..+++..-.....+|+. +++++.++.+++|.++++.|+|+|+..|||++++ +|++++.|+.|
T Consensus 189 ~aR~~~G~~~~yP~~-eN~h~~gIl~~siaPa~-i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg~llvNEiAP 265 (375)
T COG0026 189 VARSNDGEVAFYPVA-ENVHRNGILRTSIAPAR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DGELLVNEIAP 265 (375)
T ss_pred EEEcCCCCEEEeccc-ceeeecCEEEEEEecCc-CCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEEC-CCcEEEeeccC
Confidence 999988998875432 45566655555678985 7888999999999999999999999999999984 67999999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
|+..+...|...+.++..+.+|+..+|.||+
T Consensus 266 RvHNSGH~T~~gc~~SQFEqHlRAv~glPLg 296 (375)
T COG0026 266 RVHNSGHWTIDGCETSQFEQHLRAVLGLPLG 296 (375)
T ss_pred CCCCccccchhhccccHHHHHHHHHhCCCCC
Confidence 9999988888899999999999999999997
No 52
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.96 E-value=2.8e-28 Score=294.63 Aligned_cols=288 Identities=26% Similarity=0.383 Sum_probs=235.4
Q ss_pred EECch-HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcC
Q 000092 53 IANNG-MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTR 131 (2267)
Q Consensus 53 Ian~G-~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~ 131 (2267)
..|+| ..+..+|+++|+.+ .+ ..+++ +.+++++....||+++..|. +.+.| ++.++++|++++
T Consensus 3 wfn~~~s~~~~~i~~lr~~~--------~~--~i~~s--h~~~~~~~~~~aD~~~~eP~--~~~~y--v~~~l~~C~~~~ 66 (329)
T PF15632_consen 3 WFNRGFSSQRDIIRSLRANR--------DF--TIIAS--HRDPRAPILYAADEAYLEPA--DGEEY--VDWCLDFCKEHG 66 (329)
T ss_pred EecCCCccHHHHHHHHHcCC--------Ce--EEEEE--eCCCCchHHhcCceeeecCC--CHHHH--HHHHHHHHHHhC
Confidence 34554 56678899999751 12 23366 77789999999999999997 66788 899999999999
Q ss_pred CCEEEeCCCcCCCCCchHHHHHHcCCeEeC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 132 VDAVWPGWGHASEIPELPDTLSTKGIIFLG-PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 132 vDaV~pG~G~~sEn~~la~~l~~~GI~fiG-Ps~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
+|.++||+.... -..-.+.+++.|+.+.- ++.+++..+.||..+.+.+++.|||+|+|..
T Consensus 67 Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~------------------ 127 (329)
T PF15632_consen 67 IDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWR------------------ 127 (329)
T ss_pred CeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEE------------------
Confidence 999999965322 12234667778999987 8899999999999999999999999999987
Q ss_pred ccccccCCHHHHHHHHhhhCCc---EEEeecCCCCCcCeEEEC-CHHHHHHHHH------------HHHhh-CCCCcEEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYP---AMIKASWGGGGKGIRKVH-NDDEVRALFK------------QVQGE-VPGSPIFI 273 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyP---VVIKPs~GgGGkGIr~V~-s~eEL~~a~~------------~~~~e-~~~~~I~V 273 (2267)
+++.+++..+++++++| ++|||..|.||.|.|+++ +.+++...++ .+.+. ..-.+++|
T Consensus 128 -----v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llv 202 (329)
T PF15632_consen 128 -----VRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLV 202 (329)
T ss_pred -----eCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEE
Confidence 89999999999998888 999999999999999998 5555554443 11111 12358999
Q ss_pred EEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEE
Q 000092 274 MKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353 (2267)
Q Consensus 274 EeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d 353 (2267)
|+|++| .|+||+++++. |++++..+|... .+.|.+ +..+++.+.|.++++.+|+.|..+|+|++|
T Consensus 203 MeyL~G-~EySVD~l~~~-G~viaaV~R~K~--G~~q~l-----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d 267 (329)
T PF15632_consen 203 MEYLPG-PEYSVDCLADE-GRVIAAVPRRKL--GRRQVL-----------ENDEELIELARRLAEAFGLDGLFNIQFRYD 267 (329)
T ss_pred ecCCCC-CeEEEEEEecC-CEEEEEEEEEec--CceeEE-----------EECHHHHHHHHHHHHHhCCCceEEEEEEEc
Confidence 999988 69999999997 999977666433 122222 234688999999999999999999999997
Q ss_pred ccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 354 ~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
.+|.+++||||||++|+.+.+- .+|+||+.+.+..++|.+.+
T Consensus 268 -~~g~p~LLEINpR~sGGi~~s~-~aGvNlp~la~~~~lG~~~~ 309 (329)
T PF15632_consen 268 -EDGNPKLLEINPRPSGGIGYSC-AAGVNLPYLAVKLALGEPIP 309 (329)
T ss_pred -CCCCEEEEEeCCCCccchhhHh-hcCCChHHHHHHHHcCCCCC
Confidence 4899999999999999998886 69999999999999999875
No 53
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=99.96 E-value=1.6e-28 Score=292.74 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=175.0
Q ss_pred CCCCCChHHHhcccccCCCCcccccccCCCceecccc--cc--ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCC
Q 000092 1856 PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG--WA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1931 (2267)
Q Consensus 1856 P~~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~--~a--~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~ 1931 (2267)
|.+||| +++|+. ||| +|+|+..+ |+ +++|||+|||+|+||+|||++++..
T Consensus 67 ~~Rp~~-~d~I~~-----------l~d--~f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~------------ 120 (319)
T PRK05724 67 PQRPYT-LDYIEL-----------LFT--DFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRD------------ 120 (319)
T ss_pred CCCCCH-HHHHHH-----------Hhh--HHHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCcc------------
Confidence 347999 488887 787 69999988 77 9999999999999999999976421
Q ss_pred ccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1932 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1932 s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+ .+.+.+|+++|++++|++|++++|++|++|||+|+||+||.+|..+|..|+.+++++++.++++.+||+|++|+
T Consensus 121 ~~e-~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIi-- 197 (319)
T PRK05724 121 TKE-KIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVI-- 197 (319)
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEe--
Confidence 122 23456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHH
Q 000092 2012 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVES 2091 (2267)
Q Consensus 2012 g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~ 2091 (2267)
|+++||+..+++. +|+ ++|||+|.++||+|||++.|.||+.... ++.+
T Consensus 198 Geg~sGGAla~~~---aD~--v~m~~~A~~svisPEg~a~Il~~~~~~a--------------------------~~aa- 245 (319)
T PRK05724 198 GEGGSGGALAIGV---GDR--VLMLEYSTYSVISPEGCASILWKDASKA--------------------------PEAA- 245 (319)
T ss_pred CCccHHHHHHHhc---cCe--eeeecCceEeecCHHHHHHHHhcCchhH--------------------------HHHH-
Confidence 7766665555553 587 9999999999999999999999975210 0000
Q ss_pred HHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2092 LQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2092 ~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
+ .+.-||..+++.|+||+||+.. .....++.+|+..|.
T Consensus 246 ---------------------e--~~~ita~~l~~~g~iD~II~Ep~gga~~~~~~~~~~l~~~i~ 288 (319)
T PRK05724 246 ---------------------E--AMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALL 288 (319)
T ss_pred ---------------------H--HcCCCHHHHHHCCCceEeccCCCCCccCCHHHHHHHHHHHHH
Confidence 0 1223789999999999999864 445667777777764
No 54
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.96 E-value=1.8e-29 Score=286.55 Aligned_cols=189 Identities=20% Similarity=0.295 Sum_probs=168.7
Q ss_pred CCCCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEE
Q 000092 1568 SGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLA 1647 (2267)
Q Consensus 1568 ~g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~ 1647 (2267)
+++|.++|...+..+|.+++ ||++.+++ +|.++++.+.||.|+|||+|.+.++||.|+.|+|.+.++|+|.|+
T Consensus 92 ~k~Y~~rL~~a~~~tg~~da-vvtg~g~i------~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~ 164 (294)
T COG0777 92 SKKYKDRLEAARKKTGLDDA-VVTGEGTI------NGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFS 164 (294)
T ss_pred chhhHHHHHHHHhhcCCCcc-eEEEeeEE------CCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 46688899999999999888 99999887 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc
Q 000092 1648 ANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT 1727 (2267)
Q Consensus 1648 ~ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~ 1727 (2267)
+||||||| |++++||||+ .|++...++ +
T Consensus 165 aSGGARMQ--Eg~lSLMQMa---------------ktsaAl~~l-----------------------------------~ 192 (294)
T COG0777 165 ASGGARMQ--EGILSLMQMA---------------KTSAALKRL-----------------------------------S 192 (294)
T ss_pred cCcchhHh--HHHHHHHHHH---------------HHHHHHHHH-----------------------------------H
Confidence 99999999 9999999998 233333333 2
Q ss_pred ccccccccccccccCceEEEEEcCcccch-hhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccc
Q 000092 1728 GSGAIAGAYSRAYKETFTLTYVTGRTVGI-GAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1728 ~sG~iag~~s~a~~~iptis~vtg~~~G~-gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~ 1806 (2267)
..| .|+|+|+|+||+|| .|+++.|||++|.++++.|+|+||++|++++|++. +++++++++..+
T Consensus 193 ea~------------lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~L---PegfQ~aEfLle 257 (294)
T COG0777 193 EAG------------LPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKL---PEGFQTAEFLLE 257 (294)
T ss_pred hcC------------CceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhhhcccC---CcchhhHHHHHH
Confidence 223 49999999999999 89999999999999999999999999999999999 899999999999
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
+|++|.+|+ +.|--..+..+|+.+
T Consensus 258 hG~iD~iv~-R~elr~tla~ll~~~ 281 (294)
T COG0777 258 HGMIDMIVH-RDELRTTLASLLAKL 281 (294)
T ss_pred cCCceeeec-HHHHHHHHHHHHHHh
Confidence 999999996 466666666666654
No 55
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.96 E-value=3.7e-28 Score=289.29 Aligned_cols=212 Identities=20% Similarity=0.255 Sum_probs=173.0
Q ss_pred CCCCCChHHHhcccccCCCCcccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCC
Q 000092 1856 PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1931 (2267)
Q Consensus 1856 P~~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~ 1931 (2267)
|.+|||+ ++|.. ||| +|+|+..+|+ +++|||+|||+|+||+|||++.+ .+
T Consensus 67 ~~Rp~~~-d~i~~-----------l~d--~f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g------------~~ 120 (316)
T TIGR00513 67 PDRPYTL-DYIEL-----------IFD--DFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKG------------RD 120 (316)
T ss_pred CCCCchH-HHHHH-----------Hhh--hheeeccccCCCCCCceEEEEEEECCEEEEEEEecCC------------cc
Confidence 4489999 88886 788 4999999888 99999999999999999999753 12
Q ss_pred ccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1932 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1932 s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..++ +++.+|+++|.+++|++|++++|+++++|||+|+||+||.+|...|..|+.+++++++.++++.+||+|++|+
T Consensus 121 ~~e~-~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVVi-- 197 (316)
T TIGR00513 121 TKEK-LRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVI-- 197 (316)
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe--
Confidence 2333 3445799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCc-hhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHH
Q 000092 2012 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVE 2090 (2267)
Q Consensus 2012 g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~ 2090 (2267)
|+++| ||| +++ .+|+ ++|||+|.++||+|||++.|.||+... + ++
T Consensus 198 GeggsGGAl-a~~---~aD~--v~m~~~a~~sVisPEg~a~Il~kd~~~---------------a-----------~~-- 243 (316)
T TIGR00513 198 GEGGSGGAL-AIG---VGDK--VNMLEYSTYSVISPEGCAAILWKDASK---------------A-----------PK-- 243 (316)
T ss_pred cccccHHHh-hhc---cCCE--EEEecCceEEecCHHHHHHHhccchhh---------------H-----------HH--
Confidence 66644 555 443 2588 999999999999999999999997521 0 00
Q ss_pred HHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2091 SLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2091 ~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
|.++ +.-||..+++.|+||+|||.. .-...++..|+..|.
T Consensus 244 --------------------aae~--~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~ 288 (316)
T TIGR00513 244 --------------------AAEA--MKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLL 288 (316)
T ss_pred --------------------HHHH--ccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHH
Confidence 1111 122689999999999999855 344556777776654
No 56
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.95 E-value=5.4e-27 Score=293.31 Aligned_cols=250 Identities=19% Similarity=0.212 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCC
Q 000092 119 NVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIP 198 (2267)
Q Consensus 119 dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~ 198 (2267)
....+++..++.+..... -|++|+..++.+|+..||+++||+++++..|.||..+|++++++|||||||...
T Consensus 92 ~~~~~~~~~~~~~~~~~~---~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~----- 163 (493)
T PRK06524 92 RHPETLEFIKRRGPGGKA---CFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLG----- 163 (493)
T ss_pred cCHHHHHHHHhhCCCCce---EEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccc-----
Confidence 445666777776542211 278999999999999999999999999999999999999999999999998750
Q ss_pred CCCcccccCcccccccccCCHHHHHHHHhh--hCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000092 199 PESCLVTIPDDVYRQACVYTTEEAIASCQV--VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2267)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~--IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEey 276 (2267)
.+.+.+++...++. +||||||||+.|++|+|+++|++.+|+..+++.+.. ...++||+|
T Consensus 164 ----------------~~~~~eel~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viVEe~ 224 (493)
T PRK06524 164 ----------------RVDSYDELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKVMKR 224 (493)
T ss_pred ----------------cCCCHHHHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEEEec
Confidence 13466677666665 999999999999999999999999999998877653 256999999
Q ss_pred ccccceeeEEEEEcCCCCEEEeccc------ccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHc---CceeeeE
Q 000092 277 ASQSRHLEVQLLCDQYGNVAALHSR------DCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV---NYVGAAT 347 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~vi~l~~R------dcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aL---Gy~Ga~t 347 (2267)
+.+ +|++|+++.+.+|+++....+ ++..++.+.......|+. +++++.+++.+.|.+++++| ||.|.++
T Consensus 225 I~G-rEitVev~vd~dG~Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~r 302 (493)
T PRK06524 225 IRN-VEVCIEACVTRHGTVIGPAMTSLVGYPELTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYRGYFE 302 (493)
T ss_pred cCc-EEEEEEEEEeCCCCEEeccccccccceEEEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 975 899999999988887653211 121122222223456875 88999999999999999998 8999999
Q ss_pred EEEEEEccCCcEEEeeeCccCcCCcceehhhh--cCCHH--HHHHHHHcCCCCC
Q 000092 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIA--EINLP--AAQVAVGMGIPLW 397 (2267)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqgehpvtE~vt--GvDL~--~~qL~iA~G~pL~ 397 (2267)
|||+++.++|++||+|||||++|+|++|++++ |.|++ ..+++..||.|..
T Consensus 303 VDFfvd~ddgevYfnEINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 303 VDLLHDLDADELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred EEEEEECCCCeEEEEEEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 99999854688999999999999999998855 35554 5555677888865
No 57
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=99.95 E-value=1.3e-28 Score=289.82 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=160.5
Q ss_pred CCCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEc
Q 000092 1569 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAA 1648 (2267)
Q Consensus 1569 g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ 1648 (2267)
.+|..+|.+.++..|.++ |||+|.+++ +||+|+|+++||||++||+|...++|+.|+.|+|.+.|+|+|+|.+
T Consensus 104 ~~Y~~rl~~a~~~t~~~d-gVVtG~G~I------~Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~ 176 (296)
T CHL00174 104 EPYKDRIDSYQKKTGLTD-AVQTGIGQL------NGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCA 176 (296)
T ss_pred cchHHHHHHHHhccCCCc-cEEEEEEEE------CCEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 347777888888888876 599999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccc
Q 000092 1649 NSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG 1728 (2267)
Q Consensus 1649 ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~ 1728 (2267)
||||||| |++.+|+||+ + +...+.+ ++.
T Consensus 177 SGGARmQ--Eg~~sL~qma--------k-------~saa~~~-----------------------------------~~~ 204 (296)
T CHL00174 177 SGGARMQ--EGSLSLMQMA--------K-------ISSALYD-----------------------------------YQS 204 (296)
T ss_pred CCCcccc--ccchhhhhhH--------H-------HHHHHHH-----------------------------------HHH
Confidence 9999998 9999998776 0 0000111 111
Q ss_pred cccccccccccccCceEEEEEcCcccchhhhhhc-cCCeEEEecCCcceecchHHHHHhhccccccccccCCcccccccc
Q 000092 1729 SGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLAR-LGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1729 sG~iag~~s~a~~~iptis~vtg~~~G~gAyl~~-lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~n 1807 (2267)
+| .+|+|+++||||+||+||.++ +||++||++++.|+|+||++|++++|+++ ++++|+++++.++
T Consensus 205 ~~-----------~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~l---pe~fq~ae~l~~~ 270 (296)
T CHL00174 205 NK-----------KLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTV---PEGSQAAEYLFDK 270 (296)
T ss_pred cC-----------CCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCcC---CcccccHHHHHhC
Confidence 11 269999999999999888855 59999999999999999999999999999 7999999999999
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
|++|.+|+ ..+--..+.++|+++
T Consensus 271 G~vD~iV~-r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 271 GLFDLIVP-RNLLKGVLSELFQLH 293 (296)
T ss_pred cCceEEEc-HHHHHHHHHHHHHhh
Confidence 99999996 566666666666664
No 58
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=99.94 E-value=1.8e-26 Score=270.35 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=142.0
Q ss_pred CCChHHHhcccccCCCCcccccccCCCceeccc--cccc--eEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccc
Q 000092 1859 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--GWAR--TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1934 (2267)
Q Consensus 1859 ~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~--~~a~--~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~ 1934 (2267)
...+|++|+. |||+ |+|+.. .|++ ++|||+|+|+|+||+||+++.+.. ..+
T Consensus 16 r~~are~I~~-----------L~D~--F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~------------~~d 70 (256)
T PRK12319 16 RLTTLDYATL-----------IFDD--FMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKN------------LQD 70 (256)
T ss_pred CCCHHHHHHH-----------hCch--heeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCc------------ccc
Confidence 4567778876 7885 999974 4664 699999999999999999965411 111
Q ss_pred cccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC
Q 000092 1935 RVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2014 (2267)
Q Consensus 1935 ~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~ 2014 (2267)
. ....+|+++|++++|++|++++|+++++|||+|+||+||..|...|..|+.+.+++++.+++..+||+|++|+ |++
T Consensus 71 ~-~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~--G~~ 147 (256)
T PRK12319 71 N-LKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIII--GEG 147 (256)
T ss_pred c-eeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEe--CCc
Confidence 1 2335799999999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred CchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchh
Q 000092 2015 RGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 2015 ~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
+||+..+++ .+|+ ++|||++.++||+|||++.|.||+.
T Consensus 148 ~gGgA~a~~---~~D~--v~m~~~a~~~v~~pe~~a~il~~~~ 185 (256)
T PRK12319 148 GSGGALALA---VADQ--VWMLENTMYAVLSPEGFASILWKDG 185 (256)
T ss_pred CcHHHHHhh---cCCE--EEEecCceEEEcCHHHHHHHHhcCc
Confidence 776555554 3688 9999999999999999999999864
No 59
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=99.94 E-value=1.5e-26 Score=275.25 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=171.9
Q ss_pred CCChHHHhcccccCCCCcccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccc
Q 000092 1859 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1934 (2267)
Q Consensus 1859 ~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~ 1934 (2267)
....+++|.. ||| +|+|+..+|+ +++|||+|||+|+||+||++|++ .++.|
T Consensus 72 Rp~~~d~i~~-----------l~d--~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg------------~~~~e 126 (322)
T CHL00198 72 RPTTLDYIPY-----------ILD--EWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRG------------RNTKE 126 (322)
T ss_pred CCCHHHHHHH-----------HhH--HHHHHccccccCCCCceEEEEEEECCEEEEEEEecCC------------ccchh
Confidence 3456777776 788 4999999998 99999999999999999999864 22333
Q ss_pred cccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC
Q 000092 1935 RVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2014 (2267)
Q Consensus 1935 ~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~ 2014 (2267)
++ ...+|+++|++++|++|++++|+++++|||+|+||+||.+|..+|..|+.+.+++.+.+++..+||+|++|+ |++
T Consensus 127 ~~-~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVVi--Geg 203 (322)
T CHL00198 127 NV-LRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTII--GEG 203 (322)
T ss_pred hh-hhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEe--Ccc
Confidence 33 345689999999999999999999999999999999999999999999999999999999999999999999 776
Q ss_pred CchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 000092 2015 RGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQ 2094 (2267)
Q Consensus 2015 ~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~ 2094 (2267)
+||+..+++. +|+ ++||++|.++|++|||++.|.||+.... .+. +.
T Consensus 204 gsGGAlal~~---aD~--V~m~e~a~~sVisPEg~a~Il~~d~~~a--------------------------~~a-A~-- 249 (322)
T CHL00198 204 GSGGALGIGI---GDS--IMMLEYAVYTVATPEACAAILWKDSKKS--------------------------LDA-AE-- 249 (322)
T ss_pred cHHHHHhhhc---CCe--EEEeCCeEEEecCHHHHHHHHhcchhhH--------------------------HHH-HH--
Confidence 5554444442 688 9999999999999999999999987311 000 00
Q ss_pred HHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2095 QIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2095 ~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
.+.=||..+++.|+||+|||.. .....++.+|+..|.
T Consensus 250 ---------------------~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~ 291 (322)
T CHL00198 250 ---------------------ALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLI 291 (322)
T ss_pred ---------------------HcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHH
Confidence 1122789999999999999854 344567777777764
No 60
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=99.94 E-value=1.6e-26 Score=279.04 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=164.1
Q ss_pred cccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000092 1880 IFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1955 (2267)
Q Consensus 1880 l~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ara 1955 (2267)
||| +|+|+..+|+ +++|||+|||+|+||+||+++++.. ..++. .+.+|+++|++++|++||
T Consensus 149 i~d--df~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~------------~ke~~-~rnfG~~~peGyRKAlR~ 213 (431)
T PLN03230 149 MTD--KWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRN------------TKENI-YRNFAMPQPNGYRKALRF 213 (431)
T ss_pred hhh--HHhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcc------------ccccc-ccCCCCCCHHHHHHHHHH
Confidence 787 5999999999 9999999999999999999986532 22332 333589999999999999
Q ss_pred HHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC-CchhHhhhccccCCccceee
Q 000092 1956 LMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL-RGGAWVVVDSRINSDHIEMY 2034 (2267)
Q Consensus 1956 i~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~-~GGa~vv~~~~~n~d~~~~~ 2034 (2267)
+++|++|++|||+|+||+||.+|..+|..|+.+++++++.+++..+||+|++|+ |++ .|||+.+.. .|+ +|
T Consensus 214 mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVVi--GeGgSGGAlalg~----aD~--Vl 285 (431)
T PLN03230 214 MRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVI--GEGGSGGALAIGC----GNR--ML 285 (431)
T ss_pred HHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--CCCCcHHHHHhhc----CCE--EE
Confidence 999999999999999999999999999999999999999999999999999999 665 445554432 377 99
Q ss_pred cccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHh
Q 000092 2035 ADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKF 2114 (2267)
Q Consensus 2035 A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~f 2114 (2267)
|||+|.++|++|||++.|.|++... +++.+
T Consensus 286 Mle~A~ysVisPEgaAsILwkd~~~--------------------------A~eAA------------------------ 315 (431)
T PLN03230 286 MMENAVYYVASPEACAAILWKSAAA--------------------------APKAA------------------------ 315 (431)
T ss_pred EecCCEEEecCHHHHHHHHhccccc--------------------------hHHHH------------------------
Confidence 9999999999999999999997621 00000
Q ss_pred HhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2115 AELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2115 adlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
+.+.-||..+++.|+||+||+.. .....++.+|+..|.
T Consensus 316 ealkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~ 358 (431)
T PLN03230 316 EALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVIL 358 (431)
T ss_pred HHcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHH
Confidence 02234789999999999999864 335567777776654
No 61
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.94 E-value=6.8e-26 Score=263.04 Aligned_cols=183 Identities=23% Similarity=0.296 Sum_probs=157.9
Q ss_pred cccccccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000092 1876 WIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1955 (2267)
Q Consensus 1876 ~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ara 1955 (2267)
|+..|||+++|+|... ++|||+|||+|+||+||+++. +..++.++++|.|+|
T Consensus 5 ~l~~l~d~~~~~e~~~----~vv~G~arl~G~~V~vIa~~~------------------------~~~~g~~~~~k~A~~ 56 (238)
T TIGR03134 5 WLAALFPNGHEVAGDP----GVLVGSAELAGGKVTVIGVVP------------------------DAEVGLDEALALAQA 56 (238)
T ss_pred HHHHHcCCCcEEecCC----cEEEEEEEECCEEEEEEEECC------------------------CCcCChHHHHHHHHH
Confidence 5556999999999986 999999999999999999952 226777899999999
Q ss_pred HHHh-c-ccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC---CCEEEEEccCCcCCchhHhhhccccCCcc
Q 000092 1956 LMDF-N-REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK---QPVFVYIPMMAELRGGAWVVVDSRINSDH 2030 (2267)
Q Consensus 1956 i~~a-~-~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~---vP~i~vI~~~g~~~GGa~vv~~~~~n~d~ 2030 (2267)
+..| + +|++|||+|+|++||.+|.++|..|+.+++|++++++..++ +|+|++|+ |+++||+|.+++ +++|.
T Consensus 57 v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~--g~a~ggg~lamg--~~ad~ 132 (238)
T TIGR03134 57 VLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIY--GKAISGAFLAHG--LQADR 132 (238)
T ss_pred HHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEe--CCccHHHHHHHc--cCcCe
Confidence 9996 5 59999999999999999999999999999999999999887 99999999 888999999995 56788
Q ss_pred ceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHH
Q 000092 2031 IEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQV 2110 (2267)
Q Consensus 2031 ~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~ 2110 (2267)
+||||+|.++||+||+++.|.||+.+.+ .++
T Consensus 133 --v~Alp~A~i~vm~~e~aa~I~~~~~~~~-----------------------------------------------~e~ 163 (238)
T TIGR03134 133 --IIALPGAMVHVMDLESMARVTKRSVEEL-----------------------------------------------EAL 163 (238)
T ss_pred --EEEcCCcEEEecCHHHHHHHHccCHhHH-----------------------------------------------HHH
Confidence 9999999999999999999999865210 011
Q ss_pred HHHhHhhhCcHHHHHHcCCcccccCccch
Q 000092 2111 ATKFAELHDTSLRMAAKGVIKEVVDWDKS 2139 (2267)
Q Consensus 2111 a~~fadlhdt~~rm~~~G~Id~ii~~~~~ 2139 (2267)
|..|..+...+..+.+.|+||+||++.+.
T Consensus 164 a~~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 164 AKSSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred HHhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 23334445567899999999999998884
No 62
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.94 E-value=4.6e-25 Score=267.49 Aligned_cols=271 Identities=16% Similarity=0.217 Sum_probs=204.6
Q ss_pred EEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCH
Q 000092 50 SILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 50 kVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dv 120 (2267)
||.|+=+|. .|..+.+++++.||+++ .. |.+..
T Consensus 5 ~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~-----------~~--~~~~~------------------------- 46 (296)
T PRK14569 5 KIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAV-----------GV--DASGK------------------------- 46 (296)
T ss_pred EEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEE-----------EE--cCCch-------------------------
Confidence 555555553 67889999999999985 23 21100
Q ss_pred HHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCC
Q 000092 121 QLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP 199 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~ 199 (2267)
.++....+.++|.|+++. |...|+..++..|+..||+++|++++++..+.||..+|++++++|||||+|..
T Consensus 47 -~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~------- 118 (296)
T PRK14569 47 -ELVAKLLELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKF------- 118 (296)
T ss_pred -hHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEE-------
Confidence 011222345789999876 56678899999999999999999999999999999999999999999999754
Q ss_pred CCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc
Q 000092 200 ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279 (2267)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g 279 (2267)
+.+. ....+.+|||+||||..||+|+||.+|+|.+||.++++.+... ++++||+|++|
T Consensus 119 ----------------~~~~---~~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~---~~~lvEefI~G 176 (296)
T PRK14569 119 ----------------LTDK---LVAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTG 176 (296)
T ss_pred ----------------Echh---hhhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhc---CCEEEEccccc
Confidence 1111 1234678999999999999999999999999999999887532 47999999986
Q ss_pred cceeeEEEEEcCCCCEEEecccc--cccc-cccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRD--CSVQ-RRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rd--csvq-rr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
+|++|.++.++....+.+.... .... ....+.....|+. ++++..+++++.|.+++++||++|.++|||++++ +
T Consensus 177 -~E~tv~vl~~~~~~~~~i~~~~~~~~~~~k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~ 253 (296)
T PRK14569 177 -KEITVAIVNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDD-R 253 (296)
T ss_pred -EEEEEEEECCcCcceEEEecCCCcCChhhccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-C
Confidence 8999999976532222221111 1110 1122333456775 6788889999999999999999999999999983 6
Q ss_pred CcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHHH
Q 000092 357 GEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 357 g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~iA 391 (2267)
|++||+|||||++-. .|......|+|+.++..++.
T Consensus 254 g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii 292 (296)
T PRK14569 254 GNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRII 292 (296)
T ss_pred CCEEEEEeeCCCCCCCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999854 35555567888888766553
No 63
>PRK06849 hypothetical protein; Provisional
Probab=99.94 E-value=6.9e-26 Score=284.53 Aligned_cols=279 Identities=14% Similarity=0.158 Sum_probs=207.9
Q ss_pred CccEEEEECchH-HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC-CCCCccCHHHHH
Q 000092 47 PIHSILIANNGM-AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT-NNNNYANVQLIV 124 (2267)
Q Consensus 47 ~~kkVLIan~G~-~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~-~~~~Y~dvd~Il 124 (2267)
..+||||+|++. .++.++|++++.|++++ ++..+....+.+.+++|+++.+|... ..+.| ++.|+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi-----------~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~ 69 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVI-----------LADSLKYPLSRFSRAVDGFYTIPSPRWDPDAY--IQALL 69 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-----------EEeCCchHHHHHHHhhhheEEeCCCCCCHHHH--HHHHH
Confidence 458899999875 79999999999999986 44333333446678999999986422 23456 89999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
++++++++|+|+|+.+.........+.++ .++.+++|++++++.+.||..++++++++|||+|++..
T Consensus 70 ~i~~~~~id~vIP~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~------------ 136 (389)
T PRK06849 70 SIVQRENIDLLIPTCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYL------------ 136 (389)
T ss_pred HHHHHcCCCEEEECChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEE------------
Confidence 99999999999999763311111122232 35778899999999999999999999999999999776
Q ss_pred ccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+++.+++.++..+. |||+|+||..|+||.|+.++.+.+++... . .....++++||||+| .++
T Consensus 137 -----------v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~----~-~~~~~~~ivQe~I~G-~e~ 199 (389)
T PRK06849 137 -----------ITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKEL----P-ISKDNPWVMQEFIQG-KEY 199 (389)
T ss_pred -----------eCCHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhccc----c-cCCCCCeEEEEEecC-CeE
Confidence 67888888877776 99999999999999999999995544321 1 122357999999998 577
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
++..+.. +|+++.... ..+.+ ....+......+...++|++.+.++++++||.|.+++||+++ ++|++|+||
T Consensus 200 ~~~~~~~-~G~v~~~~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~-~~g~~~~iE 271 (389)
T PRK06849 200 CSYSIVR-SGELRAHSC----YKPEY--CAGSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIET-ENGDAYPIE 271 (389)
T ss_pred EEEEEEE-CCEEEEEEE----eeccc--cCCCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEEC-CCCCEEEEE
Confidence 7777764 377765422 11111 000000000111123689999999999999999999999998 478999999
Q ss_pred eCccCcCCcceeh
Q 000092 364 LNPRLQVEHPVTE 376 (2267)
Q Consensus 364 INpRlqgehpvtE 376 (2267)
||||+++..+++.
T Consensus 272 iNpR~~~g~~l~~ 284 (389)
T PRK06849 272 CNPRTTSGLHLFD 284 (389)
T ss_pred ecCCCCceeEEcC
Confidence 9999998887765
No 64
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.94 E-value=2.1e-26 Score=273.28 Aligned_cols=174 Identities=21% Similarity=0.256 Sum_probs=148.4
Q ss_pred CceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcC-----CCEEEEEcCCCCCCCchhh
Q 000092 1585 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKK-----LPLIYLAANSGARIGVAEE 1659 (2267)
Q Consensus 1585 n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~-----iP~I~l~~ssGARi~~~e~ 1659 (2267)
-..|||++.+++ +||+|+|+++|+||++||+|+.+++|+.+++++|.+.+ +|+|+|.+|||+||+ |+
T Consensus 54 ~~dGvV~G~G~I------~Gr~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlq--Eg 125 (301)
T PRK07189 54 FDDGVVVGKGTL------DGRPVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQ--EA 125 (301)
T ss_pred CCCcEEEEEEEE------CCEEEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCcc--ch
Confidence 357899999977 99999999999999999999999999999999999999 999999999999998 77
Q ss_pred hhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccccccccccc
Q 000092 1660 VKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRA 1739 (2267)
Q Consensus 1660 ~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a 1739 (2267)
..++++++ .+| . .+.+.||.
T Consensus 126 ~~~L~~~a------------~i~------~----------------------------------~~~~ls~~-------- 145 (301)
T PRK07189 126 NAGLAAIA------------EIM------R----------------------------------AIVDLRAA-------- 145 (301)
T ss_pred HHHHHHHH------------HHH------H----------------------------------HHHHHhCC--------
Confidence 77764433 111 0 11122232
Q ss_pred ccCceEEEEEcCc--ccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccccccccc-------CCccccccccCce
Q 000092 1740 YKETFTLTYVTGR--TVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQ-------LGGPKIMATNGVV 1810 (2267)
Q Consensus 1740 ~~~iptis~vtg~--~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~-------lGG~~i~~~nGv~ 1810 (2267)
||+|++++|+ |+||+||++.+||++||++++.|+|+||++|+.++|.+.| ++++ +||.+.+ .||++
T Consensus 146 ---VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~VIe~~~G~e~~-d~~d~~~vw~~lGG~h~~-~sG~~ 220 (301)
T PRK07189 146 ---VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPEVIEQEAGVEEF-DSRDRALVWRTTGGKHRY-LSGLA 220 (301)
T ss_pred ---CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHHHHHHhcCCccc-CHHHhcccccccCcceee-ecccc
Confidence 6999999999 9999999999999999999999999999999999996554 4566 9997443 59999
Q ss_pred EEEecCcHHHHHHHHHHHhcCCC
Q 000092 1811 HLTVSDDLEGISAILKWLSYVPP 1833 (2267)
Q Consensus 1811 d~~v~dd~e~~~~i~~~LsylP~ 1833 (2267)
|.+++||.++++. ++++|+..
T Consensus 221 D~~v~dd~~a~~~--~~~~~~~~ 241 (301)
T PRK07189 221 DALVDDDVAAFRA--AALALLAR 241 (301)
T ss_pred eEEeCCHHHHHHH--HHHHHHhc
Confidence 9999999999988 77899864
No 65
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.93 E-value=4e-26 Score=268.46 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=145.1
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHH-----cCCCEEEEEcCCCCCCCchhhh
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACA-----KKLPLIYLAANSGARIGVAEEV 1660 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~-----~~iP~I~l~~ssGARi~~~e~~ 1660 (2267)
..|||++..++ +||+|+|+++|+||++||+|+.+++|+.+++++|.+ .++|+|+|.+|||+||+ |++
T Consensus 46 ~dgvV~G~G~I------~Gr~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlq--Eg~ 117 (274)
T TIGR03133 46 DDGVVVGRGTI------DGKPVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQ--EAN 117 (274)
T ss_pred CCeEEEEEEEE------CCEEEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChh--hhH
Confidence 46899999977 999999999999999999999999999999999998 77899999999999998 878
Q ss_pred hhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccc
Q 000092 1661 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAY 1740 (2267)
Q Consensus 1661 ~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~ 1740 (2267)
.++++++ .+| . .+.+.||.
T Consensus 118 ~~L~~~a------------~i~------~----------------------------------~~~~ls~~--------- 136 (274)
T TIGR03133 118 AGLIAIA------------EIM------R----------------------------------AILDARAA--------- 136 (274)
T ss_pred HHHHHHH------------HHH------H----------------------------------HHHHHhCC---------
Confidence 7775443 111 0 01122222
Q ss_pred cCceEEEEEcCc--ccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccc------cCCccccccccCceEE
Q 000092 1741 KETFTLTYVTGR--TVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM------QLGGPKIMATNGVVHL 1812 (2267)
Q Consensus 1741 ~~iptis~vtg~--~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~------~lGG~~i~~~nGv~d~ 1812 (2267)
||+|++++|| |+||+||.+.+||++||++++.|+|+||++|+.++|++.+++.+ .+||++. ..+|++|.
T Consensus 137 --vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~-~~sG~~D~ 213 (274)
T TIGR03133 137 --VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHR-FLSGDADV 213 (274)
T ss_pred --CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhH-hhcccceE
Confidence 6999999999 89999999999999999999999999999999999987665543 5999964 45999999
Q ss_pred EecCcHHHHHHHH-HHHh
Q 000092 1813 TVSDDLEGISAIL-KWLS 1829 (2267)
Q Consensus 1813 ~v~dd~e~~~~i~-~~Ls 1829 (2267)
+++||.++++... ++|.
T Consensus 214 ~v~dd~~a~~~~~~~~l~ 231 (274)
T TIGR03133 214 LVEDDVDAFRAAVIAALA 231 (274)
T ss_pred EeCCHHHHHHHHHHHHHh
Confidence 9999999987654 3554
No 66
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.93 E-value=1e-23 Score=254.66 Aligned_cols=333 Identities=20% Similarity=0.227 Sum_probs=245.9
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCc---hHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH 194 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~ 194 (2267)
.|.+.|+++|++.++|.++.| .|.|. +.+.|++.||..+||+.+++++-++|..+|.+++++|||++.|..
T Consensus 50 ~~~~~lv~fA~~~~idl~vVG----PE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~-- 123 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVG----PEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEV-- 123 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEEC----CcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccc--
Confidence 578999999999999999999 33222 348899999999999999999999999999999999999998765
Q ss_pred ccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCc
Q 000092 195 VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSP 270 (2267)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~ 270 (2267)
+++.+++.++.++.|.|++|||..-.+||||.++.+.++..++.+.+... ..+..
T Consensus 124 ---------------------f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~ 182 (428)
T COG0151 124 ---------------------FTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGAR 182 (428)
T ss_pred ---------------------cCCHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCc
Confidence 77999999999999999999999999999999999999999998877654 23467
Q ss_pred EEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHHH-HHHHHHH
Q 000092 271 IFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLE-QAARRLA 337 (2267)
Q Consensus 271 I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL~-~~A~rla 337 (2267)
++||+|++| .|+|++++.|+. +++.+. .-..|.+..+ .+|+|.+++++.++.. +.....+
T Consensus 183 VVIEEfL~G-eE~S~~a~~DG~-~v~p~p-----~aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv 255 (428)
T COG0151 183 VVIEEFLDG-EEFSLQAFVDGK-TVIPMP-----TAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTV 255 (428)
T ss_pred EEEEecccc-eEEEEEEEEcCC-eEEECc-----cccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999988 799999999974 444442 2234555554 2688989988776655 5555544
Q ss_pred HHc-----CceeeeEEEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCC
Q 000092 338 KCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHG 411 (2267)
Q Consensus 338 ~aL-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~ 411 (2267)
+++ .|+|+....++++ .++|++||.|.|++- |....-...--||.+..+.++.|.--.
T Consensus 256 ~gm~~EG~~f~GvLy~glMlt--~~GPkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~L~~-------------- 319 (428)
T COG0151 256 EGMAKEGYPFRGVLYAGLMLT--ADGPKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGKLDE-------------- 319 (428)
T ss_pred HHHHHcCCCceEEEEeEEEEc--CCCcEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCCccc--------------
Confidence 444 5689999999999 455999999999973 322222335679999999999984221
Q ss_pred CcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccc-cCCCcEEEE-EeeeeC-Cccccc
Q 000092 412 GVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSF-KSKPNVWAY-FSVKSG-GGIHEF 488 (2267)
Q Consensus 412 ~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~-~s~~~V~~~-~~v~~G-~~i~~~ 488 (2267)
..+.|. +.-..-+.+++++-|+++| ..|....+.. ....++.++ .++..- +.--..
T Consensus 320 -----------~~~~~~----~~~a~v~vvlA~~GYP~~~------~kG~~I~~~~~~~~~~~~vf~Agv~~~~~~~lvt 378 (428)
T COG0151 320 -----------VEILFW----DKGAAVGVVLAAEGYPGDP------EKGDVITGDEEAEEEGAKVFHAGVKLDDGGQLVT 378 (428)
T ss_pred -----------cchhhc----cCCceEEEEEecCCCCCCC------CCCCEEecChhhcccCcEEEEeeEeccCCceEEe
Confidence 011111 1112346677777777775 4453322221 111133333 333322 111112
Q ss_pred CCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 489 SDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 489 ~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
..++.=.|++.|+|.+||+++++.+++.++..|
T Consensus 379 ~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g 411 (428)
T COG0151 379 SGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDG 411 (428)
T ss_pred cCCeEEEEEecCCCHHHHHHHHHHHHhhcCCCC
Confidence 345566799999999999999999999999987
No 67
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.93 E-value=6.8e-26 Score=268.95 Aligned_cols=188 Identities=17% Similarity=0.249 Sum_probs=161.7
Q ss_pred CCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcC
Q 000092 1570 TWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAAN 1649 (2267)
Q Consensus 1570 ~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~s 1649 (2267)
+|..+|...++..|.++ |||++.+++ +|++|+|++||+||++||+|...++|+.|++++|.+.++|+|+|.+|
T Consensus 92 ~Y~~~l~~~~~~t~~~d-~vVtG~g~I------~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dS 164 (285)
T TIGR00515 92 KYKDRIAKAQKETGEKD-AVVTGKGTL------YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSAS 164 (285)
T ss_pred chhHHHHHHhhccCCCC-cEEEEEEEE------CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36667777777778765 699999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccc
Q 000092 1650 SGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGS 1729 (2267)
Q Consensus 1650 sGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~s 1729 (2267)
|||||+ |++.+++|++ +- .....++ +.
T Consensus 165 gGaRmq--Eg~~sL~~~a--------k~-------~~~~~~~-----------------------------------~~- 191 (285)
T TIGR00515 165 GGARMQ--EALLSLMQMA--------KT-------SAALAKM-----------------------------------SE- 191 (285)
T ss_pred CCcccc--cchhHHHhHH--------HH-------HHHHHHH-----------------------------------Hc-
Confidence 999998 9999988766 10 0011111 11
Q ss_pred ccccccccccccCceEEEEEcCcccchhhhhh-ccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccC
Q 000092 1730 GAIAGAYSRAYKETFTLTYVTGRTVGIGAYLA-RLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNG 1808 (2267)
Q Consensus 1730 G~iag~~s~a~~~iptis~vtg~~~G~gAyl~-~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nG 1808 (2267)
..+|+|+++||||+||++|.+ .++|++||++++.|+|+||++|++++|+++ ++++|+++++..+|
T Consensus 192 -----------~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~ti~e~l---pe~~q~ae~~~~~G 257 (285)
T TIGR00515 192 -----------RGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PEGFQTSEFLLEHG 257 (285)
T ss_pred -----------CCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHHhcCcc---chhcCCHHHHHhCC
Confidence 126999999999999977765 599999999999999999999999999999 69999999999999
Q ss_pred ceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1809 VVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1809 v~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
.+|.+++ ..+....+.++|+++-
T Consensus 258 ~vD~iv~-~~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 258 AIDMIVH-RPEMKKTLASLLAKLQ 280 (285)
T ss_pred CCcEEEC-cHHHHHHHHHHHHHHh
Confidence 9999995 7888888999998763
No 68
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.93 E-value=3e-24 Score=260.95 Aligned_cols=276 Identities=20% Similarity=0.297 Sum_probs=208.7
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000092 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 47 ~~kkVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y 117 (2267)
|.+||.|+=+|. .+..+++++++.||++. ....+ .
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~-----------~i~~~--~----------------------- 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAH-----------PIDPG--E----------------------- 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEE-----------EEecC--c-----------------------
Confidence 445666665442 67889999999999985 22111 0
Q ss_pred cCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCcc
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~ 196 (2267)
.+++..+..++|.|++.. |...++..++..|+..|++++|++..++..+.||..++++++++|||+|+|..
T Consensus 47 ----~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~---- 118 (304)
T PRK01372 47 ----DIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIV---- 118 (304)
T ss_pred ----chHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE----
Confidence 123344556899999875 44567888899999999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000092 197 IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2267)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEey 276 (2267)
+.+.+++...++.+|||+||||..|+||+||.++++.+++.++++++.. .+.+++||+|
T Consensus 119 -------------------~~~~~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~ 177 (304)
T PRK01372 119 -------------------LTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK--YDDEVLVEKY 177 (304)
T ss_pred -------------------EeCcchHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh--cCCcEEEEcc
Confidence 5666777788889999999999999999999999999999999887742 2568999999
Q ss_pred ccccceeeEEEEEcCCCCEEEecccc--ccccccc--ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 277 ASQSRHLEVQLLCDQYGNVAALHSRD--CSVQRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~vi~l~~Rd--csvqrr~--qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
++| +|++|.++++....++...... +...... .......|+ .++++..++|++.+.++++++|+.|.+++||++
T Consensus 178 i~G-~E~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~ 255 (304)
T PRK01372 178 IKG-RELTVAVLGGKALPVIEIVPAGEFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFML 255 (304)
T ss_pred cCC-EEEEEEEECCCccceEEEEecCCEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 986 8999999877543333221110 0010001 011223454 478888999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
++ +|++||||+|||++... +......|+|+.++...+
T Consensus 256 ~~-~g~~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~i 296 (304)
T PRK01372 256 DE-DGKPYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRI 296 (304)
T ss_pred cC-CCCEEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 84 58899999999987532 223334588877666554
No 69
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.93 E-value=9.5e-25 Score=268.82 Aligned_cols=231 Identities=21% Similarity=0.231 Sum_probs=184.4
Q ss_pred CCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 131 RVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 131 ~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
++|.|||. .|...|+..++..|+..|++++|+++.++..+.||..++++++++|||+|||..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~----------------- 143 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVV----------------- 143 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-----------------
Confidence 68999998 478889999999999999999999999999999999999999999999999865
Q ss_pred cccccccCCH----HHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeE
Q 000092 210 VYRQACVYTT----EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 210 ~~~~~~V~s~----eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieV 285 (2267)
+.+. .......+.+|||+||||..|+||.||.+|++.+|+.++++++... +..++||+|++| +|++|
T Consensus 144 ------~~~~~~~~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEefI~G-~E~~v 214 (333)
T PRK01966 144 ------LTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY--DRKVLVEQGIKG-REIEC 214 (333)
T ss_pred ------EeccccchhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCcCC-EEEEE
Confidence 1111 2234456789999999999999999999999999999999987644 468999999987 99999
Q ss_pred EEEEcCCCCEEEecccccc--cccccceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCc
Q 000092 286 QLLCDQYGNVAALHSRDCS--VQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcs--vqrr~qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~ 358 (2267)
.++++ .+.+..+.+..+. +.....|. ....|+. +++++.+++++.|.+++++||++|.++|||++++ +|+
T Consensus 215 ~vl~~-~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g~ 291 (333)
T PRK01966 215 AVLGN-DPKASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCSGLARVDFFLTE-DGE 291 (333)
T ss_pred EEECC-CCeEcccEEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CCC
Confidence 99987 3443322222221 11111122 2234664 8899999999999999999999999999999984 678
Q ss_pred EEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 359 YYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 359 ~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+||||+|||++.. .|.....+|+|+.++.-++
T Consensus 292 ~~vlEiNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 292 IYLNEINTMPGFTPISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred EEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999854 2334456788887766544
No 70
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=99.92 E-value=2.6e-25 Score=265.09 Aligned_cols=189 Identities=17% Similarity=0.247 Sum_probs=162.6
Q ss_pred CCCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEc
Q 000092 1569 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAA 1648 (2267)
Q Consensus 1569 g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ 1648 (2267)
..|..+|.+.++..|.+++ ||++.+++ +||+|+|++||+||++||+|...++|+.|++++|.+.++|+|+|.+
T Consensus 92 ~~Y~~~l~~~~~~t~~~d~-vVtG~g~I------~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~d 164 (292)
T PRK05654 92 KKYKDRLKAAQKKTGLKDA-VVTGKGTI------EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSA 164 (292)
T ss_pred cccchHHHHhhhccCCCCc-EEEEEEEE------CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 3477788888888888764 99999977 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccc
Q 000092 1649 NSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG 1728 (2267)
Q Consensus 1649 ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~ 1728 (2267)
|||+||| |++.+++||+ +.+ ....++ +.
T Consensus 165 sgGarmq--Egi~sL~~~a--------k~~-------~a~~~~-----------------------------------~~ 192 (292)
T PRK05654 165 SGGARMQ--EGLLSLMQMA--------KTS-------AALKRL-----------------------------------SE 192 (292)
T ss_pred CCCcchh--hhhhHHHhHH--------HHH-------HHHHHH-----------------------------------Hc
Confidence 9999998 9999998766 111 001111 11
Q ss_pred cccccccccccccCceEEEEEcCcccchhhhh-hccCCeEEEecCCcceecchHHHHHhhccccccccccCCcccccccc
Q 000092 1729 SGAIAGAYSRAYKETFTLTYVTGRTVGIGAYL-ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1729 sG~iag~~s~a~~~iptis~vtg~~~G~gAyl-~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~n 1807 (2267)
..+|+|+++||||+||++|. +.++|++||.+++.|+|+||+++++++|+++ ++++|+++++..+
T Consensus 193 ------------a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~~~e~l---pe~~~~ae~~~~~ 257 (292)
T PRK05654 193 ------------AGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQTVREKL---PEGFQRAEFLLEH 257 (292)
T ss_pred ------------CCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhhhhhhh---hhhhcCHHHHHhC
Confidence 13799999999999997776 5569999999999999999999999999988 6899999999999
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|++|.+++ ..|....+.++|+++.
T Consensus 258 G~vD~Vv~-~~e~r~~l~~~L~~~~ 281 (292)
T PRK05654 258 GAIDMIVH-RRELRDTLASLLALHT 281 (292)
T ss_pred CCCcEEEC-HHHHHHHHHHHHHHHh
Confidence 99999995 7888888999999874
No 71
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.92 E-value=5.7e-24 Score=259.68 Aligned_cols=238 Identities=20% Similarity=0.263 Sum_probs=180.0
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|+|||.. |...++..++..|+..|++++|+++.++..+.||..++++++++|||+|+|.. +.
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-------------~~- 127 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIV-------------LT- 127 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE-------------Ee-
Confidence 5689999964 45567888999999999999999999999999999999999999999999875 00
Q ss_pred ccccccccCCHHHH--HHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 209 DVYRQACVYTTEEA--IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 209 ~~~~~~~V~s~eea--~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
....+.+++ ..+.+.++||+|+||..|+||+||.+|+|.+++.++++.+... +.+++||+|++| +|++|.
T Consensus 128 -----~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~i~G-~e~~v~ 199 (315)
T TIGR01205 128 -----QNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY--DEEVLVEQFIKG-RELEVS 199 (315)
T ss_pred -----cccccchhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCCCC-EEEEEE
Confidence 001111222 2344679999999999999999999999999999999887643 468999999985 899999
Q ss_pred EEEcCCCCE-EEecccccccccccceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 287 LLCDQYGNV-AALHSRDCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 287 vl~D~~G~v-i~l~~Rdcsvqrr~qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
+++++.+.. +....+.+.+.....|. ....|+. ++++..++|++.+.++++++|+.|.++|||++++ +|++|
T Consensus 200 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g~~~ 277 (315)
T TIGR01205 200 ILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP-LDEELEEKIKELALKAYKALGCRGLARVDFFLDE-EGEIY 277 (315)
T ss_pred EECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CCCEE
Confidence 998654322 22222211111111111 1224554 7889999999999999999999999999999984 56899
Q ss_pred EeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 361 FLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 361 fLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
|+|+|||++... |..-...|+|..++...+.
T Consensus 278 viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ii 312 (315)
T TIGR01205 278 LNEINTIPGMTAISLFPKAAAAAGIEFSQLVERIL 312 (315)
T ss_pred EEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHHHH
Confidence 999999987542 2233456888887766543
No 72
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.92 E-value=6.9e-25 Score=277.25 Aligned_cols=203 Identities=15% Similarity=0.159 Sum_probs=163.4
Q ss_pred ccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHH
Q 000092 1877 IGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKT 1952 (2267)
Q Consensus 1877 ~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ 1952 (2267)
+..+|| +|+|+.++|+ +++|||+|||+|+||+|||++++. +..++ +.+.+|++.|.+++|+
T Consensus 167 i~~i~d--df~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~------------~tke~-~~rnfG~~~peGyRKA 231 (762)
T PLN03229 167 IFNITD--KFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGR------------NTKEN-IMRNFGMPTPHGYRKA 231 (762)
T ss_pred HHHHHH--HHHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCc------------ccccc-ccccCCCCCHHHHHHH
Confidence 334666 5999999988 899999999999999999998642 22233 3345789999999999
Q ss_pred HHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-hhHhhhccccCCccc
Q 000092 1953 AQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GAWVVVDSRINSDHI 2031 (2267)
Q Consensus 1953 arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~ 2031 (2267)
+|++++|++|++|||+|+|++||.+|...|..|+.+++++.+.+++..+||+|++|+ |+++| |||.+.. +|+
T Consensus 232 lRlmkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVVi--GeggSGGAlA~g~----aD~- 304 (762)
T PLN03229 232 LRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVI--GEGGSGGALAIGC----ANK- 304 (762)
T ss_pred HHHHHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEe--CCcchHHHHHhhc----CCE-
Confidence 999999999999999999999999999999999999999999999999999999999 66654 5554433 587
Q ss_pred eeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHH
Q 000092 2032 EMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVA 2111 (2267)
Q Consensus 2032 ~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a 2111 (2267)
++|||+|.++|++|||++.|.||+.... .+. +-
T Consensus 305 -VlMle~A~~sVisPEgaAsILwkd~~~A--------------------------~eA-Ae------------------- 337 (762)
T PLN03229 305 -LLMLENAVFYVASPEACAAILWKSAKAA--------------------------PKA-AE------------------- 337 (762)
T ss_pred -EEEecCCeEEecCHHHHHHHHhcCcccH--------------------------HHH-HH-------------------
Confidence 9999999999999999999999986311 000 00
Q ss_pred HHhHhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2112 TKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2112 ~~fadlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
.+.=||..|.+.|+||.|||.. .-...++.+|+..|.
T Consensus 338 ----~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~ 379 (762)
T PLN03229 338 ----KLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAIN 379 (762)
T ss_pred ----HcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHHH
Confidence 1222789999999999999864 333445666665543
No 73
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.92 E-value=5.2e-24 Score=263.30 Aligned_cols=230 Identities=21% Similarity=0.242 Sum_probs=179.8
Q ss_pred cCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.|+|. +|...|+..++..|+..|++++|+++.+...+.||..++++++++|||+|+|..
T Consensus 89 ~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~---------------- 152 (343)
T PRK14568 89 IRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWT---------------- 152 (343)
T ss_pred ccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE----------------
Confidence 568999997 677889999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+.+.++. ..+.++||+||||..||||+||.+|+|.+||.++++.+... +..++||+|++| +|++|.++
T Consensus 153 -------~~~~~~~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~sv~vl 220 (343)
T PRK14568 153 -------VTADERP--DAATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY--DSKVLIEEAVVG-SEVGCAVL 220 (343)
T ss_pred -------EECCchh--hhhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEECCcCC-EEEEEEEE
Confidence 2222221 13578999999999999999999999999999999887644 468999999987 89999999
Q ss_pred EcCCCCEEEeccccc---ccccccceEE---------EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 289 CDQYGNVAALHSRDC---SVQRRHQKII---------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdc---svqrr~qKii---------eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
+++.+..+.-..+-+ .+.+.++|.. ...|+. ++++..+++++.|.++++++|+.|.++|||++++ +
T Consensus 221 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~ 298 (343)
T PRK14568 221 GNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-D 298 (343)
T ss_pred cCCCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-C
Confidence 875432221111100 1222233321 234665 7899999999999999999999999999999984 7
Q ss_pred CcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHH
Q 000092 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~ 389 (2267)
|.+||+||||+++... |..-...|+++.++.-+
T Consensus 299 g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 299 GTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred CCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 8899999999998542 22223456666655443
No 74
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.92 E-value=1.5e-23 Score=259.60 Aligned_cols=238 Identities=19% Similarity=0.246 Sum_probs=183.6
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
..+|.++++. |...|+..++..|+..|++++|+++.++..+.||..+|++++++|||+|+|.. ++.
T Consensus 87 ~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~-------------~~~ 153 (347)
T PRK14572 87 LDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFE-------------LEK 153 (347)
T ss_pred cCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-------------EEc
Confidence 4678888864 67779999999999999999999999999999999999999999999999865 000
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
.....+.++..+..+++|||+||||..||+|+||.+|+|.+||..+++.+... +.+++||+||+| +|++|.++
T Consensus 154 ----~~~~~~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~--~~~vlVEefI~G-~E~sv~vi 226 (347)
T PRK14572 154 ----LKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES--DSKVMSQSFLSG-TEVSCGVL 226 (347)
T ss_pred ----cccccChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEEcCccc-EEEEEEEE
Confidence 00123445555556789999999999999999999999999999999988642 568999999987 89999999
Q ss_pred EcCC-C--CEEEeccccccc-------cccc--ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 289 CDQY-G--NVAALHSRDCSV-------QRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 289 ~D~~-G--~vi~l~~Rdcsv-------qrr~--qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
++.. | +.+.+...+... ..++ .......|+. +++++.+++++.|.+++++||+.|.++|||+++ +
T Consensus 227 ~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~--~ 303 (347)
T PRK14572 227 ERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV--D 303 (347)
T ss_pred eCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE--C
Confidence 8532 2 333333322111 0011 0122335765 789999999999999999999999999999998 6
Q ss_pred CcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
|++||+|+|++++... |..-...|+++.++.-++
T Consensus 304 ~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 304 GEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred CcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999998542 333335677777665443
No 75
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.92 E-value=1.9e-25 Score=229.79 Aligned_cols=107 Identities=31% Similarity=0.531 Sum_probs=102.9
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
+||||||||.++|.|++|+|+.+.+|++++||++.++.+|..|+++||||+||||+||.||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~G- 79 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEG- 79 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEES-
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEEC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld 550 (2267)
++||++||++||++|+|++|+++|+|||
T Consensus 80 v~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 80 VKTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SSHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred ccCCHHHHHHHhCCcccccCCCeeeccC
Confidence 9999999999999999999999999997
No 76
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.92 E-value=1.5e-23 Score=260.10 Aligned_cols=240 Identities=17% Similarity=0.214 Sum_probs=185.4
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.|+|.. |...|+..++..|+..||+++|++..+...+.||..+|++++++|||||||.. +.
T Consensus 86 ~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~----~~---------- 151 (364)
T PRK14570 86 LEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIG----FR---------- 151 (364)
T ss_pred cCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEE----Ee----------
Confidence 4689999875 56779999999999999999999999999999999999999999999999865 00
Q ss_pred ccccccccCCHHHHHHH-HhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 209 DVYRQACVYTTEEAIAS-CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~-a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
......+.+++.+. .+.+|||+||||..+|+|.||.+|++.+||.++++.+... +..++||+||+| +|++|.+
T Consensus 152 ---~~~~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~--~~~vlVEefI~G-rEi~v~V 225 (364)
T PRK14570 152 ---KYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY--DLTVVIEKFIEA-REIECSV 225 (364)
T ss_pred ---ccccccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEECCcCC-EEEEEEE
Confidence 00012244555443 4679999999999999999999999999999999988754 457999999985 9999999
Q ss_pred EEcCCCCEEEecccc-----c-cccc-----ccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 288 LCDQYGNVAALHSRD-----C-SVQR-----RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 288 l~D~~G~vi~l~~Rd-----c-svqr-----r~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
+++....+....+.. + +... ..+......|+. +++++.+++++.|.++.++||++|.++|||++++++
T Consensus 226 lg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~ 304 (364)
T PRK14570 226 IGNEQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDT 304 (364)
T ss_pred ECCCCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCC
Confidence 987543333322211 0 0000 012223346776 899999999999999999999999999999998545
Q ss_pred CcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
|++||+|+||+++-.. |..-...|+++.++.-++
T Consensus 305 g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 342 (364)
T PRK14570 305 GLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNL 342 (364)
T ss_pred CcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999998542 333334688777665443
No 77
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.91 E-value=8e-25 Score=225.51 Aligned_cols=107 Identities=32% Similarity=0.610 Sum_probs=105.3
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
+||||||||.++|.|++|+|+.+++|++++||++.++.+|..|+++||||+||||+||+||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~G- 79 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEG- 79 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEEC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld 550 (2267)
++||++||+.||.+|+|++|+++|+|||
T Consensus 80 v~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 80 VKTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred ccCCHHHHHHHhcCHhhhcCcccccccC
Confidence 9999999999999999999999999996
No 78
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=99.90 E-value=4.3e-23 Score=246.23 Aligned_cols=197 Identities=20% Similarity=0.265 Sum_probs=157.9
Q ss_pred ccCCC----CCCChHHHhcccccCCCCcccccccCCCceeccc---------------------------cccceEEEEE
Q 000092 1853 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------------------GWARTVVTGR 1901 (2267)
Q Consensus 1853 ~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------------------~~a~~vVtG~ 1901 (2267)
.++|. ....+|++|+. |+|+|||.|+.. +.+++||||+
T Consensus 47 ~vc~~c~~h~rl~areRi~~-----------L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~ 115 (292)
T PRK05654 47 NVCPKCGHHMRISARERLDL-----------LLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGK 115 (292)
T ss_pred CCCCCCCCCeeCCHHHHHHH-----------HccCCccEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEE
Confidence 34665 55688888886 899999999964 1248999999
Q ss_pred EEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhh
Q 000092 1902 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 1981 (2267)
Q Consensus 1902 arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~ 1981 (2267)
|+|+|+||+|+|+|++++ ||+++..+++|++|+++.|+++++|||+|+|++|+ .
T Consensus 116 g~I~G~~V~v~a~D~~f~---------------------gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGa-----r 169 (292)
T PRK05654 116 GTIEGMPVVLAVMDFSFM---------------------GGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGA-----R 169 (292)
T ss_pred EEECCEEEEEEEEecccc---------------------cCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCc-----c
Confidence 999999999999998877 89999999999999999999999999999999996 5
Q ss_pred hhhchHH--HHHHH---HHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcch
Q 000092 1982 LFEGILQ--AGSTI---VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2056 (2267)
Q Consensus 1982 e~~gilk--~ga~i---v~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~ 2056 (2267)
|++|++. .++++ +..++.+++|+|++++ |.++||+...+. +.+|+ ++|||+|++|++||+.+..
T Consensus 170 mqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~--gpt~GG~aas~a--~~~D~--iia~p~A~ig~aGprvie~----- 238 (292)
T PRK05654 170 MQEGLLSLMQMAKTSAALKRLSEAGLPYISVLT--DPTTGGVSASFA--MLGDI--IIAEPKALIGFAGPRVIEQ----- 238 (292)
T ss_pred hhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEe--CCCchHHHHHHH--HcCCE--EEEecCcEEEecCHHHHHh-----
Confidence 6777754 44564 4457778899999999 788888655543 35788 9999999999999943310
Q ss_pred hhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2057 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2057 ~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
++ .+++ .+.+.+|..+.++|+||.||++
T Consensus 239 -----~~-----------------------------~e~l------------------pe~~~~ae~~~~~G~vD~Vv~~ 266 (292)
T PRK05654 239 -----TV-----------------------------REKL------------------PEGFQRAEFLLEHGAIDMIVHR 266 (292)
T ss_pred -----hh-----------------------------hhhh------------------hhhhcCHHHHHhCCCCcEEECH
Confidence 00 0000 0124467888999999999999
Q ss_pred cchHHHHHHHHHH
Q 000092 2137 DKSRSFFCRRLRR 2149 (2267)
Q Consensus 2137 ~~~R~~~~~~L~r 2149 (2267)
+++|..|...|+.
T Consensus 267 ~e~r~~l~~~L~~ 279 (292)
T PRK05654 267 RELRDTLASLLAL 279 (292)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998885
No 79
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.90 E-value=6.9e-22 Score=240.14 Aligned_cols=222 Identities=20% Similarity=0.246 Sum_probs=171.5
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.||+.. |...|+..++..|+..|++++|+++.++..+.||..++++++ +|||+|+|..
T Consensus 52 ~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~---------------- 114 (299)
T PRK14571 52 KSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVE---------------- 114 (299)
T ss_pred cCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEE----------------
Confidence 4579999864 445578889999999999999999999999999999999998 5899999865
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+.+.. ..+.++||+||||..|+||+||.+|+|.+||.++++++... ..+++||+|++| +|++|.++
T Consensus 115 -------~~~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~vlVEeyI~G-~E~sv~vl 180 (299)
T PRK14571 115 -------IKEFM----KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR--YGSVIVQEYIPG-REMTVSIL 180 (299)
T ss_pred -------Eechh----hhhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh--CCcEEEEccccc-eEEEEEEE
Confidence 22211 24568999999999999999999999999999998876543 357999999986 89999999
Q ss_pred EcCCCC-EEEeccccccccccc----ceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCc
Q 000092 289 CDQYGN-VAALHSRDCSVQRRH----QKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2267)
Q Consensus 289 ~D~~G~-vi~l~~Rdcsvqrr~----qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~ 358 (2267)
+++.+. ++.+.+. ....++ .|. ....|+. ++++..++|.+.+.++++++|+.|.++|||+++ +++
T Consensus 181 ~~~~~~~vl~~~e~--~~~~~~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~--~~~ 255 (299)
T PRK14571 181 ETEKGFEVLPILEL--RPKRRFYDYVAKYTKGETEFILPAP-LNPEEERLVKETALKAFVEAGCRGFGRVDGIFS--DGR 255 (299)
T ss_pred cCCCCeeeeceEEE--ecCCCccccccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE--CCc
Confidence 986433 2222111 011110 011 1124654 788999999999999999999999999999998 688
Q ss_pred EEEeeeCccCcCCc----ceehhhhcCCHHHHH
Q 000092 359 YYFLELNPRLQVEH----PVTEWIAEINLPAAQ 387 (2267)
Q Consensus 359 ~yfLEINpRlqgeh----pvtE~vtGvDL~~~q 387 (2267)
+||+|+||+++... |..-...|++..++.
T Consensus 256 ~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li 288 (299)
T PRK14571 256 FYFLEINTVPGLTELSDLPASAKAGGIEFEELV 288 (299)
T ss_pred EEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHH
Confidence 99999999998642 212234577777643
No 80
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.89 E-value=5.8e-22 Score=269.57 Aligned_cols=240 Identities=19% Similarity=0.248 Sum_probs=186.3
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.|+|.. |...|+..++..|+..||+++|+++.++..+.||..+|++++++|||||||.. +..
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~-------------~~~ 591 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQP-------------LTL 591 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE-------------Eec
Confidence 4689999976 66789999999999999999999999999999999999999999999999875 000
Q ss_pred ccccccccCCHH-HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 209 DVYRQACVYTTE-EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 209 ~~~~~~~V~s~e-ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
.-+ ..+.+ .+.+..+++|||+||||..+|+|+||.+|++.+||.++++.+... ..+++||+|+.+++|++|.+
T Consensus 592 ~~~----~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~i~~grEi~v~v 665 (809)
T PRK14573 592 AGW----KREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY--DTDVFVEESRLGSREIEVSC 665 (809)
T ss_pred hhc----ccChHHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeccCCCEEEEEEE
Confidence 000 01222 234567789999999999999999999999999999999988743 46899999998889999999
Q ss_pred EEcCCCCEEEe--cccccc-----cccccc----eEEE-ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEcc
Q 000092 288 LCDQYGNVAAL--HSRDCS-----VQRRHQ----KIIE-EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2267)
Q Consensus 288 l~D~~G~vi~l--~~Rdcs-----vqrr~q----Kiie-eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~ 355 (2267)
++++.+..+.. .++.+. .+..+. ...+ ..|+. +++++.+++++.|.++.+++|++|.++|||++++
T Consensus 666 l~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~- 743 (809)
T PRK14573 666 LGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGKGSCRIDFFLDE- 743 (809)
T ss_pred EeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-
Confidence 99876643221 222221 111110 0011 23554 8999999999999999999999999999999984
Q ss_pred CCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 356 TGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 356 ~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|+|||++-.. |..-...|+++.++.-++
T Consensus 744 ~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 744 EGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 68899999999998642 433345687777665543
No 81
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.89 E-value=1.4e-22 Score=253.49 Aligned_cols=321 Identities=17% Similarity=0.273 Sum_probs=267.2
Q ss_pred ccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000092 48 IHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2267)
Q Consensus 48 ~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~ 116 (2267)
.+-++|+|.|. -|+.++|++|++|+.|+..+.+-++| +.-..+||+.|.-.
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETV-----------STDyDecdrLYFee------- 979 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETV-----------STDYDECDRLYFEE------- 979 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccc-----------cCchHHHhhHhHhh-------
Confidence 45689999986 69999999999999998444444443 22345788866532
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCC-cCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWG-HASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G-~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
.+.+.++++-+.++..+|+...| .+..| ++-.|.+.|...+|.+|+.+..+.|+..+.+++.+.||..|+|..
T Consensus 980 -is~E~vmDiYe~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wke--- 1053 (1435)
T KOG0370|consen 980 -ISYERVMDIYELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKE--- 1053 (1435)
T ss_pred -hhhhhhhhhhhhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhh---
Confidence 45689999999999988876665 55555 667788999999999999999999999999999999999999987
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+++.+|+.++|+++||||+|.|+.=-.|--|-++.+.+||+..++++..-++..|+.|-+
T Consensus 1054 --------------------lt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisK 1113 (1435)
T KOG0370|consen 1054 --------------------LTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVISK 1113 (1435)
T ss_pred --------------------hccHHHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHH
Confidence 789999999999999999999999999999999999999999999999888999999999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccccce--------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeE
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK--------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAAT 347 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qK--------iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~t 347 (2267)
||++++|++|+.++.. |+++... ...|-. ---..|+..++++..+++.+++.++++++...|+.+
T Consensus 1114 fie~AkEidvDAVa~~-G~~~~ha------iSEHvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN 1186 (1435)
T KOG0370|consen 1114 FIEGAKEIDVDAVASD-GKVLVHA------ISEHVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFN 1186 (1435)
T ss_pred hhcccceechhhhccC-CeEEEEe------hhhhhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCce
Confidence 9999999999988753 6665431 112200 001247888999999999999999999999999999
Q ss_pred EEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCch--------------hhhhcccccCCCc
Q 000092 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP--------------EIRRFYGMEHGGV 413 (2267)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ip--------------dir~~yg~~~~~~ 413 (2267)
++|+.. ++++.+||+|-|.+.+.|+...+.|+|+++...+..||.|++..+ .+.+|.|.||. |
T Consensus 1187 ~Q~i~k--~n~lkVIECN~RaSRSFPFvSKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV~vKvPqFSf~RLagADp~-L 1263 (1435)
T KOG0370|consen 1187 MQIIAK--DNELKVIECNVRASRSFPFVSKTLGVDFIALATRAIMGVPVPPDLLLHPDYVAVKVPQFSFSRLAGADPV-L 1263 (1435)
T ss_pred EEEEec--CCeEEEEEeeeeeeccccceehhcCchHHHHHHHHHhCCCCCCccccCCCeEEEEccccccccccCCCce-e
Confidence 999998 789999999999999999999999999999999999998876432 24555566665 4
Q ss_pred ccccccccc
Q 000092 414 YDAWRKTSV 422 (2267)
Q Consensus 414 ~~~~~~~~~ 422 (2267)
+.+|.+||+
T Consensus 1264 gvEMaSTGE 1272 (1435)
T KOG0370|consen 1264 GVEMASTGE 1272 (1435)
T ss_pred eeEeccccc
Confidence 566665553
No 82
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.89 E-value=1.4e-22 Score=240.89 Aligned_cols=199 Identities=21% Similarity=0.234 Sum_probs=158.0
Q ss_pred ccCCC----CCCChHHHhcccccCCCCcccccccCCCceeccc---------------------------cccceEEEEE
Q 000092 1853 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------------------GWARTVVTGR 1901 (2267)
Q Consensus 1853 ~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------------------~~a~~vVtG~ 1901 (2267)
.++|. .+-.+|++|+. |||+|||.|+.. +.+++||||+
T Consensus 46 ~vc~~c~~h~rl~areRi~~-----------L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~ 114 (285)
T TIGR00515 46 EVCPKCDHHMRMDARERIES-----------LLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGK 114 (285)
T ss_pred CCCCCCCCcCcCCHHHHHHH-----------ceeCCeeEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEEE
Confidence 45665 56788999987 899999999842 1247999999
Q ss_pred EEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhh
Q 000092 1902 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 1981 (2267)
Q Consensus 1902 arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~ 1981 (2267)
|+|+|+||+|+|+|++++ ||+++..+++|++|+++.|.++++|||+|+|++|+. ..
T Consensus 115 g~I~G~~V~v~a~D~~f~---------------------gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaR---mq 170 (285)
T TIGR00515 115 GTLYGMPIVVAVFDFAFM---------------------GGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGAR---MQ 170 (285)
T ss_pred EEECCEEEEEEEEecccc---------------------CCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc---cc
Confidence 999999999999998877 899999999999999999999999999999999962 23
Q ss_pred hhhchHHHHHHH---HHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhh
Q 000092 1982 LFEGILQAGSTI---VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKE 2058 (2267)
Q Consensus 1982 e~~gilk~ga~i---v~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~ 2058 (2267)
|....+..++++ +..+++.++|+|++++ |.++||+...++ ..+|+ ++|||+|.+|++||+-+ +
T Consensus 171 Eg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~--gpt~GG~aas~a--~~~D~--iia~p~A~ig~aGprVi-e------- 236 (285)
T TIGR00515 171 EALLSLMQMAKTSAALAKMSERGLPYISVLT--DPTTGGVSASFA--MLGDL--NIAEPKALIGFAGPRVI-E------- 236 (285)
T ss_pred cchhHHHhHHHHHHHHHHHHcCCCCEEEEEe--CCcchHHHHHHH--hCCCE--EEEECCeEEEcCCHHHH-H-------
Confidence 333345556664 4457778899999999 788888755443 35688 99999999999999521 0
Q ss_pred hHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccc
Q 000092 2059 LLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDK 2138 (2267)
Q Consensus 2059 ~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~ 2138 (2267)
.++ . +.+| +.+++|..+.++|.||.||++++
T Consensus 237 --~ti-----------------------------~--------e~lp----------e~~q~ae~~~~~G~vD~iv~~~~ 267 (285)
T TIGR00515 237 --QTV-----------------------------R--------EKLP----------EGFQTSEFLLEHGAIDMIVHRPE 267 (285)
T ss_pred --HHh-----------------------------c--------Cccc----------hhcCCHHHHHhCCCCcEEECcHH
Confidence 000 0 0011 33568889999999999999999
Q ss_pred hHHHHHHHHHH
Q 000092 2139 SRSFFCRRLRR 2149 (2267)
Q Consensus 2139 ~R~~~~~~L~r 2149 (2267)
+|+.|...|+.
T Consensus 268 ~r~~l~~~L~~ 278 (285)
T TIGR00515 268 MKKTLASLLAK 278 (285)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 83
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=99.89 E-value=2.2e-23 Score=238.74 Aligned_cols=160 Identities=21% Similarity=0.298 Sum_probs=140.0
Q ss_pred cccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHH
Q 000092 1876 WIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK 1951 (2267)
Q Consensus 1876 ~~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K 1951 (2267)
++..+||+ |+|+..+.+ +++|+|+||++|+||.||+.+.+ .++.++....+ |+..|++++|
T Consensus 74 yi~~i~~d--f~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG------------~dtk~~~~rNF-Gm~~PeGyRK 138 (317)
T COG0825 74 YIELLFTD--FVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKG------------RDTKEKLKRNF-GMPRPEGYRK 138 (317)
T ss_pred HHHHHHhH--HHHhcCccccCcChhheeeeeeECCeeEEEEeeecC------------ccchhHHHhcC-CCCCchHHHH
Confidence 33346764 999977643 79999999999999999999866 44555555565 8999999999
Q ss_pred HHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccc
Q 000092 1952 TAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHI 2031 (2267)
Q Consensus 1952 ~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~ 2031 (2267)
+.|.+++|++|++|||+|+||+|..+|..+|..|+..++|+.+..|+..+||+|++|+ |+..+|...+++. .|.
T Consensus 139 AlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVI--GEGgSGGALAi~v---ad~- 212 (317)
T COG0825 139 ALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVI--GEGGSGGALAIGV---ADR- 212 (317)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEe--cCCCchhhHHhhH---HHH-
Confidence 9999999999999999999999999999999999999999999999999999999999 8766666566665 465
Q ss_pred eeecccccEEEeeCccchhhhhcchh
Q 000092 2032 EMYADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 2032 ~~~A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
++|.++|.++|++|||++.|+||+.
T Consensus 213 -V~mle~s~ySVisPEG~AsILWkD~ 237 (317)
T COG0825 213 -VLMLENSTYSVISPEGCASILWKDA 237 (317)
T ss_pred -HHHHHhceeeecChhhhhhhhhcCh
Confidence 8999999999999999999999986
No 84
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.87 E-value=7.1e-21 Score=220.73 Aligned_cols=348 Identities=20% Similarity=0.206 Sum_probs=235.7
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC---CccCHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN---NYANVQLIV 124 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~---~Y~dvd~Il 124 (2267)
+-|||++| ..-..+..+|.++||+|+ .|..+.+.|.. -.|+.++..-.+..-. + .|..+|+
T Consensus 11 ~~kiLviG--vntR~vveSA~klGf~V~-------sv~~y~~~Dl~------~~a~~~l~~r~~~~~~rfe~-~de~~li 74 (389)
T COG2232 11 SCKILVIG--VNTRPVVESASKLGFEVY-------SVQYYDPADLP------GDAISYLRERPGELLGRFEN-LDEQKLI 74 (389)
T ss_pred cceEEEEe--ecchHhHHHHHhcCeEEE-------EeEeecccccc------cccceEEEecChhhcCcccC-CCHHHHH
Confidence 45799984 556778999999999997 34446666654 3455555443322222 4 4788999
Q ss_pred HHHHHcC--CCE-EEeCCCcCCCCCchHHHHHHcCCeEeCCCHH-HHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCC
Q 000092 125 EMAEMTR--VDA-VWPGWGHASEIPELPDTLSTKGIIFLGPPAT-SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPE 200 (2267)
Q Consensus 125 ~iA~~~~--vDa-V~pG~G~~sEn~~la~~l~~~GI~fiGPs~e-am~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~ 200 (2267)
+++.... +|+ ++|+.|+...+..- +.+....|.+++ ....+.+|..+.+.+..+|+|.|+...
T Consensus 75 ~~~~~~~~dvD~~ii~~sg~e~l~~~g-----~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~-------- 141 (389)
T COG2232 75 EAAEDLAEDVDAPIIPFSGFEALRTSG-----ELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKK-------- 141 (389)
T ss_pred HHHHhhhhhcceeeeeccccccccccC-----ccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhh--------
Confidence 9998764 788 88888877665222 234456778887 889999999999999999999998432
Q ss_pred CcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000092 201 SCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2267)
Q Consensus 201 ~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~ 280 (2267)
.+ ....--+|+|+||+.|+||. +.++.=.++.. -.++++|+|++|
T Consensus 142 ------------------~e----~~~~gekt~IlKPv~GaGG~-~el~~~~Ee~~-----------~~~~i~Qefi~G- 186 (389)
T COG2232 142 ------------------IE----PLEEGEKTLILKPVSGAGGL-VELVKFDEEDP-----------PPGFIFQEFIEG- 186 (389)
T ss_pred ------------------hh----hhhhcceeeEEeeccCCCce-eeecccccccC-----------CcceehhhhcCC-
Confidence 11 11122368999999999996 33333222221 258999999987
Q ss_pred ceeeEEEEEcCCCCEEEecccccccc--cc--cceE--EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 281 RHLEVQLLCDQYGNVAALHSRDCSVQ--RR--HQKI--IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 281 rhieVqvl~D~~G~vi~l~~Rdcsvq--rr--~qKi--ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
++++|.+++++. .++.+..-+-.+. +- .|-. -...|.+. +..+++++.|..+...+|+.|...|||+++
T Consensus 187 ~p~Svs~is~g~-~a~~la~N~QiI~~~~~~~~~f~Y~GNlTP~~~---~~~ee~e~la~elV~~lgL~GsnGVDfvl~- 261 (389)
T COG2232 187 RPVSVSFISNGS-DALTLAVNDQIIDGLRGEYSQFVYKGNLTPFPY---EEVEEAERLAEELVEELGLVGSNGVDFVLN- 261 (389)
T ss_pred ceeEEEEEecCc-ceEEEEEeeeeecccccccccceeccCcCCCcc---hhhHHHHHHHHHHHHHhccccccccceEee-
Confidence 899999999975 3433321111110 00 0000 01124332 333899999999999999999999999998
Q ss_pred cCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCC
Q 000092 355 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAES 434 (2267)
Q Consensus 355 ~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~ 434 (2267)
+.++|+||+|||+||...+.|+++|+|+.+++++..+|.-. ++
T Consensus 262 -d~gpyViEVNPR~qGt~e~iE~s~giNl~~lHi~af~G~Lp------------------------------------Er 304 (389)
T COG2232 262 -DKGPYVIEVNPRIQGTLECIERSSGINLFRLHIQAFDGELP------------------------------------ER 304 (389)
T ss_pred -cCCcEEEEecCcccchHHHHHHhcCCCHHHHHHHHhcCcCc------------------------------------CC
Confidence 78899999999999999999999999999999999998533 23
Q ss_pred CCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhh
Q 000092 435 TRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGL 514 (2267)
Q Consensus 435 ~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL 514 (2267)
+.|+++++...++|.+ +-+.| .....|.+---.+|..+.+ -+ .+..|||.+.++++|..-+.+.+
T Consensus 305 ~kpr~~a~krILyap~--~v~v~-----------~l~~~~~~DiP~~Gtviek-ge-Pl~sviA~~nt~~~a~~~~er~~ 369 (389)
T COG2232 305 PKPRGYACKRILYAPR--TVRVP-----------ILKLSWTHDIPRPGTVIEK-GE-PLCSVIASSNTRSGAESMAERLA 369 (389)
T ss_pred CCcceeEEeEEEeccc--eeecc-----------cccccccccCCCCCcccCC-CC-ceeeeeeccCCHHHHHHHHHHHH
Confidence 5567888887777732 22222 1112222211122222222 22 27889999999999998776655
Q ss_pred cc
Q 000092 515 KE 516 (2267)
Q Consensus 515 ~e 516 (2267)
+.
T Consensus 370 er 371 (389)
T COG2232 370 ER 371 (389)
T ss_pred HH
Confidence 53
No 85
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.86 E-value=5e-21 Score=214.59 Aligned_cols=178 Identities=23% Similarity=0.351 Sum_probs=131.7
Q ss_pred HhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEE
Q 000092 169 ALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK 248 (2267)
Q Consensus 169 ~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~ 248 (2267)
.+.||..++.+++++|||+|++.. +.+.+++..+++.++||+|+||..|+||+||++
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~-----------------------~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~ 57 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRI-----------------------VDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFI 57 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEE-----------------------ECSHHHHHHHHHHSSSSEEEEESS-STTTT-EE
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHcCCCEEEEcCccccCCCEEE
Confidence 478999999999999999999766 789999999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccccc--ceEEEecCCCCCCHH
Q 000092 249 VHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH--QKIIEEGPITVAPLE 324 (2267)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~--~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~--qKiieeaPa~~l~~e 324 (2267)
+++.+++.++++.+..... +.++++|+|++| .++++.++.+ +|.++.+...+...+... ..-...+.....+..
T Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (184)
T PF13535_consen 58 VHSPEELEAALAEIREDSPLGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPSEPP 135 (184)
T ss_dssp ESSHHHHHHHHHHHHHHHS-HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES--CE
T ss_pred eCCHHHHHHHHHHHHHhcccCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecccccc
Confidence 9999999999999877654 678999999986 8999998888 688766544333222110 000111111112334
Q ss_pred HHHHHHHHHHHHHHHcCc-eeeeEEEEEEEccCCcEEEeeeCccCcCCc
Q 000092 325 TVKKLEQAARRLAKCVNY-VGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2267)
Q Consensus 325 ~~~eL~~~A~rla~aLGy-~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2267)
..+++++.+.++++++|| .|++++||++++ +|.+||||+|||++|.+
T Consensus 136 ~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~-~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 136 LPEELRDLARKLLRALGYRNGFFHIDFIVDP-DGELYFIEINPRFGGGS 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHT--SEEEEEEEEEET-CCEEEEEEEESS--STT
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEEEEEEeC-CCCEEEEEECccCCCCC
Confidence 458999999999999999 799999999995 47899999999999875
No 86
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.86 E-value=8.1e-22 Score=246.88 Aligned_cols=305 Identities=21% Similarity=0.324 Sum_probs=260.5
Q ss_pred ccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000092 48 IHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2267)
Q Consensus 48 ~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~ 116 (2267)
-+|+||+|.|. .+...|+++|+-|+.|+-.+.+|-+| .| .-.+||+.+.+|-
T Consensus 377 ~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtv--Qt---------s~~lAD~vyflpv------ 439 (1435)
T KOG0370|consen 377 VKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATV--QT---------SKGLADKVYFLPV------ 439 (1435)
T ss_pred ccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCccccc--cc---------ccccceEEEEeec------
Confidence 47999999864 46788999999999988655555444 33 1238999999984
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCC-CCC--chHH--HHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCC
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWGHAS-EIP--ELPD--TLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWS 191 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G~~s-En~--~la~--~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~ 191 (2267)
+.+-+....+...+|++..++|... -|- ++-+ .+++.|....|.+.+++....|+..+...+++.+.++.|..
T Consensus 440 --T~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~ 517 (1435)
T KOG0370|consen 440 --TPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSE 517 (1435)
T ss_pred --CHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchh
Confidence 3566788889999999999988543 221 1223 45567888999999999999999999999999999999966
Q ss_pred CCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcE
Q 000092 192 GSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI 271 (2267)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I 271 (2267)
. +++.+++.++++++|||||+.+...-||-|--.++|.+||.+...++.+. ...+
T Consensus 518 a-----------------------~~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~--s~Qi 572 (1435)
T KOG0370|consen 518 A-----------------------VSTIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL--SPQI 572 (1435)
T ss_pred h-----------------------HhHHHHHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc--Ccee
Confidence 5 78999999999999999999999999999999999999999988877654 4589
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEeccccccccccc------ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceee
Q 000092 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH------QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGA 345 (2267)
Q Consensus 272 ~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~------qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga 345 (2267)
+||+-+.|..|+|.++++|.++|++.+ |....-. -.-+-.+|+..++.+....++..|+++.+++|..|-
T Consensus 573 lvekSlkGwkevEyevvrDa~~nciTv----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGE 648 (1435)
T KOG0370|consen 573 LVEKSLKGWKEVEYEVVRDAYDNCITV----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGE 648 (1435)
T ss_pred eehhhhccccceEEEEEeccccchhhh----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCccc
Confidence 999999999999999999999999987 5443222 223446899999999999999999999999999999
Q ss_pred eEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCch
Q 000092 346 ATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400 (2267)
Q Consensus 346 ~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ip 400 (2267)
++|+|.++|.+-++++||+|+|++.+..+...+||..|......+++|+||+.+|
T Consensus 649 cniQyaL~p~s~~y~IiEVNarLSrssaLASkaTgypLAy~aAKlalg~~lpe~~ 703 (1435)
T KOG0370|consen 649 CNIQYALNPYSLEYRIIEVNARLSRSSALASKATGYPLAYTAAKLALGIPLPELK 703 (1435)
T ss_pred ccceeeecccceeEEEEEEEeEEeehhhhhccCccCcHHHHHHHHhcCcccccCC
Confidence 9999999998899999999999999999999999999999999999999998765
No 87
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.85 E-value=4.9e-20 Score=220.37 Aligned_cols=226 Identities=15% Similarity=0.200 Sum_probs=167.5
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 131 ~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
..|+|++...+......+++.++..|+++++ +++++..+.||..++++++++|+|+|++..
T Consensus 48 ~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~------------------ 108 (277)
T TIGR00768 48 ELDVVIVRIVSMFRGLAVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTGL------------------ 108 (277)
T ss_pred CCCEEEEechhHhhHHHHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEEE------------------
Confidence 4688776642222334567888889999875 589999999999999999999999999765
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC-CCCcEEEEEeccccceeeEEEEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV-PGSPIFIMKVASQSRHLEVQLLC 289 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~-~~~~I~VEeyI~g~rhieVqvl~ 289 (2267)
+.+.+++.++.++++||+|+||..|+||+|+.++++.+++..+++...... ...++++|+|+++....++.++.
T Consensus 109 -----~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v 183 (277)
T TIGR00768 109 -----AGSPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFV 183 (277)
T ss_pred -----eCCHHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEE
Confidence 668888888899999999999999999999999999999998887665432 12579999999875324455444
Q ss_pred cCCCCEEEecccc--cccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCcc
Q 000092 290 DQYGNVAALHSRD--CSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2267)
Q Consensus 290 D~~G~vi~l~~Rd--csvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2267)
.+ |.+++...|. ..............|.. + .+++.+.|.++++++|+ |.+.|||++++ +|++||+|+|||
T Consensus 184 ~~-~~~~~~~~r~~~~~~~~n~~~g~~~~~~~-l----~~~~~~~a~~~~~~l~~-~~~~vD~~~~~-~g~~~viEiN~~ 255 (277)
T TIGR00768 184 VG-DEVIAAIYRITSGHWRTNLARGGKAEPCP-L----TEEIEELAIKAAKALGL-DVVGIDLLESE-DRGLLVNEVNPN 255 (277)
T ss_pred EC-CEEEEEEEEcCCCchhhhhhcCCeeeecC-C----CHHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCeEEEEEcCC
Confidence 33 4555544332 00000000000011222 2 24788999999999998 78899999984 678999999999
Q ss_pred CcCCcceehhhhcCCHHHHHHHH
Q 000092 368 LQVEHPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 368 lqgehpvtE~vtGvDL~~~qL~i 390 (2267)
++.. ..+..+|+|++++.++.
T Consensus 256 p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 256 PEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred cchh--hhHHHHCCCHHHHHHhh
Confidence 8743 45678999999998764
No 88
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.84 E-value=6.2e-19 Score=214.63 Aligned_cols=351 Identities=19% Similarity=0.206 Sum_probs=249.0
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCc---hHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH 194 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~ 194 (2267)
.|.+++.++|+++++..|++|- |.|. +...+.+.||..+||+.+++.+-++|..+|.++.++||||..|..
T Consensus 55 ~d~~ala~f~~e~~I~lVvvGP----E~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~-- 128 (788)
T KOG0237|consen 55 ADFEALASFCKEHNINLVVVGP----ELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKT-- 128 (788)
T ss_pred hhHHHHHHHHHHcceeEEEECC----chhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeee--
Confidence 5789999999999999999992 2222 236677889999999999999999999999999999999999876
Q ss_pred ccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCC
Q 000092 195 VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGS 269 (2267)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~ 269 (2267)
+++++++..+.+..+ .++|||+..-..||||.+..+.+|.-++.+.+... ..|.
T Consensus 129 ---------------------ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~ 187 (788)
T KOG0237|consen 129 ---------------------FTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGK 187 (788)
T ss_pred ---------------------eCCHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccc
Confidence 788999999999999 56999999999999999999999998888876533 2367
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHHHHHHH-HH
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLEQAAR-RL 336 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL~~~A~-rl 336 (2267)
.++|||+++| .|+++-.|.|++ ++..+. ....|.++.+ .+|+|.++++..+.+.+... +.
T Consensus 188 tvViEE~LEG-eEvS~laftDG~-s~~~mp-----~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~T 260 (788)
T KOG0237|consen 188 TVVIEELLEG-EEVSFLAFTDGY-SVRPLP-----PAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPT 260 (788)
T ss_pred eEehhhhcCc-ceEEEEEEecCc-ccccCC-----cccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHh
Confidence 8999999988 799999999986 333332 2234554443 26888888887665544332 22
Q ss_pred H-----HHcCceeeeEEEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccC
Q 000092 337 A-----KCVNYVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEH 410 (2267)
Q Consensus 337 a-----~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~ 410 (2267)
. +.+.|.|+...-++++ .++|.+||.|.|++- |..+.-....-||.+..+...-|. |..
T Consensus 261 v~Gm~~eg~~y~GVLfaGlMl~--k~~P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~~~~~-L~~------------ 325 (788)
T KOG0237|consen 261 VDGMAEEGIPYVGVLFAGLMLT--KDGPKVLEFNVRFGDPETQVLLPLLESDLAEVILACCNGR-LDT------------ 325 (788)
T ss_pred hhHHHhcCCceeeEEeeeeEEe--cCCccEEEEecccCCchhhhhHHHHHhHHHHHHHHHhhCC-ccc------------
Confidence 2 2457789999999998 567999999999973 333333334459998888776663 331
Q ss_pred CCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCC----CCCCCCccccccccCCCcEEEEEeeeeCCccc
Q 000092 411 GGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDG----FKPTSGKVQELSFKSKPNVWAYFSVKSGGGIH 486 (2267)
Q Consensus 411 ~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~----F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~ 486 (2267)
..|.|+ .....+.++++--|++...++ +.|..-+....-|.++..+.-.-.+..|++
T Consensus 326 ------------~~i~w~-----~~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss~vvTNGGR-- 386 (788)
T KOG0237|consen 326 ------------VDIVWS-----KKSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSSNVVTNGGR-- 386 (788)
T ss_pred ------------cCcccc-----ccceEEEEEecCCCCCCCcCCcccccCcccCCCcceEEeccccccccceEecCce--
Confidence 223332 122335555555566554443 122222222222333322221222444554
Q ss_pred ccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchh
Q 000092 487 EFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGW 548 (2267)
Q Consensus 487 ~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ 548 (2267)
+--|.+.+++.++|++.++.+.+.++..| .|.++=+...+|..-..+|.-
T Consensus 387 ------VLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg------~~yRkDI~~ra~~~~~~st~s 436 (788)
T KOG0237|consen 387 ------VLSVTATGDDLESAAETAYKAVQVISFSG------KFYRKDIAWRAFKNKDDSTPS 436 (788)
T ss_pred ------EEEEEecCchHHHHHHHHHHHheEEeecc------ccccchhhhhhcchhhcCCcc
Confidence 44588999999999999999999999998 455555556666655555543
No 89
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.84 E-value=9.9e-21 Score=252.96 Aligned_cols=312 Identities=20% Similarity=0.213 Sum_probs=223.6
Q ss_pred ccccCCCCCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEE
Q 000092 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87 (2267)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~ 87 (2267)
|.++||+.+|||+|.+ ..+..+.-+-+|....-|.. .+..|+.++.++-+-
T Consensus 87 q~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~----------------- 137 (727)
T PRK14016 87 QNLAGMPVGFGRTRET---SEPGVYQVVFEYKEEEVGRE---------ALELAVDLVNAAIND----------------- 137 (727)
T ss_pred HHHhCCCcceeEEEEc---CCCCEEEEEEEeCCHHHHHH---------HHHHHHHHHHHHhhC-----------------
Confidence 4689999999998663 22222211112211111111 245666666665532
Q ss_pred eccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCE--------EEeCCCcCCCCCchHHHHHHcCCeE
Q 000092 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDA--------VWPGWGHASEIPELPDTLSTKGIIF 159 (2267)
Q Consensus 88 t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDa--------V~pG~G~~sEn~~la~~l~~~GI~f 159 (2267)
.+-|.+....+++.+++.+.+++. ...|+++|++.++++ +++|||+.++. +...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~lgps--------t~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~------i~~~~~-- 201 (727)
T PRK14016 138 TPFDLEAALARLRELDEDERLGPS--------TAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRR------IQAAET-- 201 (727)
T ss_pred CCcCHHHHHHHHHHHHHhcccCCC--------HHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHH------HHHhcC--
Confidence 123778899999999999999753 358999999999988 99999998763 444443
Q ss_pred eCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 160 iGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
.+++..++..++||..++++++++|||+|++.. +.+.+++.++++++|||||+||..
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~-----------------------v~s~~~a~~~a~~iG~PvVVKP~~ 258 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRV-----------------------VTSAEDAWEAAEEIGYPVVVKPLD 258 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeE-----------------------eCCHHHHHHHHHHcCCCEEEEECC
Confidence 379999999999999999999999999999765 778999999999999999999999
Q ss_pred CCCCcCeEE-ECCHHHHHHHHHHHHhhCCCCcEEEEEeccc---------------cceeeEEEEEcCCCCEEEeccccc
Q 000092 240 GGGGKGIRK-VHNDDEVRALFKQVQGEVPGSPIFIMKVASQ---------------SRHLEVQLLCDQYGNVAALHSRDC 303 (2267)
Q Consensus 240 GgGGkGIr~-V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g---------------~rhieVqvl~D~~G~vi~l~~Rdc 303 (2267)
|++|+||++ +++.+++.++++.+... +..++||+|++| .++++.++++|+++++..+..+..
T Consensus 259 G~~G~GV~~~v~~~~el~~a~~~a~~~--~~~viVEe~I~G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n 336 (727)
T PRK14016 259 GNHGRGVTVNITTREEIEAAYAVASKE--SSDVIVERYIPGKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVN 336 (727)
T ss_pred CCCCCceEEecCCHHHHHHHHHHHHHh--CCeEEEEEecCCceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhh
Confidence 999999998 99999999999988755 368999999998 555666666676666665555432
Q ss_pred cccccc----------------------------------ceEEE--------ecCCCCCCHHHHHHHHHHHHHHHHHcC
Q 000092 304 SVQRRH----------------------------------QKIIE--------EGPITVAPLETVKKLEQAARRLAKCVN 341 (2267)
Q Consensus 304 svqrr~----------------------------------qKiie--------eaPa~~l~~e~~~eL~~~A~rla~aLG 341 (2267)
.-.||. +++.- .+-+...+.++.+++.+.|.++++.+|
T Consensus 337 ~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~g 416 (727)
T PRK14016 337 QDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIG 416 (727)
T ss_pred cCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcC
Confidence 222221 11110 011222345677889999999999999
Q ss_pred ceeeeEEEEEEEc-----cCCcEEEeeeCccCcCCcce-ehhhhcCCHHHHHHHH
Q 000092 342 YVGAATVEYLYSM-----ETGEYYFLELNPRLQVEHPV-TEWIAEINLPAAQVAV 390 (2267)
Q Consensus 342 y~Ga~tVEfl~d~-----~~g~~yfLEINpRlqgehpv-tE~vtGvDL~~~qL~i 390 (2267)
+ +.+.||++.+. +..++.++|+|..++..... .....+.|.....+..
T Consensus 417 l-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 417 L-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred C-CEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHH
Confidence 8 67779998852 12467999999998865311 2223566666666654
No 90
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.84 E-value=5.9e-21 Score=198.44 Aligned_cols=110 Identities=34% Similarity=0.598 Sum_probs=100.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|+|||||+|||++|++++|++|++|++++ +|++ +.+..+.+.++||+.|.+|++++.++|+|++.|+++
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv---------~v~s--~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~i 69 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETV---------AVNS--NPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDI 69 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEE---------EEEE--GGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcce---------eccC--chhcccccccccccceecCcchhhhhhccHHHHhhH
Confidence 68999999999999999999999988874 5566 556899999999999999999999999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
|+++++|++||||||++|+++|++.|++.|+.|+||++++|
T Consensus 70 a~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 70 ARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp HHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred hhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 99999999999999999999999999999999999999986
No 91
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.83 E-value=2.8e-19 Score=217.55 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=168.0
Q ss_pred CCCEEEeCCCc----CCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 131 RVDAVWPGWGH----ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 131 ~vDaV~pG~G~----~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
++|+|++-.+. ..++ ....++..| .++++++.++..+.||..++.+++++|||+|+|..
T Consensus 57 ~~d~v~~~~~~~~~~~~~~--~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~-------------- 119 (300)
T PRK10446 57 HFDAVIPRIGTAITFYGTA--ALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGI-------------- 119 (300)
T ss_pred CCCEEEEcCCCchhhHHHH--HHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEE--------------
Confidence 67999985432 1122 356677788 56789999999999999999999999999999865
Q ss_pred CcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc--cccee
Q 000092 207 PDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS--QSRHL 283 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~--g~rhi 283 (2267)
+.+.+++.++++++ +||+||||..|+||+||.++++.+++..+++..... +.+++||+|++ .++++
T Consensus 120 ---------~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~--~~~~lvQe~I~~~~g~d~ 188 (300)
T PRK10446 120 ---------AHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGL--NAHILVQEYIKEAQGCDI 188 (300)
T ss_pred ---------eCCHHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhc--CCCEEEEeeeccCCCceE
Confidence 45677777777777 799999999999999999999999999888776432 36899999995 34889
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
.|.+++ |+++....|...-..-..+... +... .+.++.+++++.|.++++++|+. .+.|||+++ ++++||+|
T Consensus 189 rv~vig---~~~~~~~~r~~~~~~~~~n~~~-g~~~-~~~~l~~~~~~~a~~a~~alg~~-~~gvD~~~~--~~g~~vlE 260 (300)
T PRK10446 189 RCLVVG---DEVVAAIERRAKEGDFRSNLHR-GGAA-SVASITPQEREIAIKAARTMALD-VAGVDILRA--NRGPLVME 260 (300)
T ss_pred EEEEEC---CEEEEEEEEecCCCchhheecc-CCee-ccCCCCHHHHHHHHHHHHHhCCC-EEEEEEEEc--CCCcEEEE
Confidence 988875 3566555543321100011111 1100 11123456889999999999997 888999998 34499999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcC
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G 393 (2267)
+|++++.. .++.++|+|+.+..++....
T Consensus 261 vN~~pg~~--~~~~~~g~~~~~~~~~~i~~ 288 (300)
T PRK10446 261 VNASPGLE--GIEKTTGIDIAGKMIRWIER 288 (300)
T ss_pred EECCCChh--hhHHHHCcCHHHHHHHHHHH
Confidence 99998653 45778999999999887654
No 92
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.82 E-value=5.5e-19 Score=212.43 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=163.2
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 131 ~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
++|++++-.........+...++..|+++++ ++++++.+.||..++.+++++|||+|+|..
T Consensus 47 ~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~------------------ 107 (280)
T TIGR02144 47 DVDVAIIRCVSQSRALYSARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYL------------------ 107 (280)
T ss_pred CCCEEEEcCcchhhHHHHHHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEe------------------
Confidence 4577775411111112245667888999986 579999999999999999999999999865
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh--CCCCcEEEEEeccc-cceeeEEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE--VPGSPIFIMKVASQ-SRHLEVQL 287 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e--~~~~~I~VEeyI~g-~rhieVqv 287 (2267)
+.+.+++..+.+++|||+|+||..|+||+|+.++++.+++.++++..... ....++++|+|+++ ++++++.+
T Consensus 108 -----~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~v 182 (280)
T TIGR02144 108 -----AFDREAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFV 182 (280)
T ss_pred -----eCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEE
Confidence 56788888888889999999999999999999999999998877543221 12457999999986 47777777
Q ss_pred EEcCCCCEEEecccccccccccceE-EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 288 LCDQYGNVAALHSRDCSVQRRHQKI-IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 288 l~D~~G~vi~l~~Rdcsvqrr~qKi-ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
+++ ...+...|...-.+.+... ....|.. ++ +++.+.|.++++++|+ |.++|||++++ +|++||+|+||
T Consensus 183 ig~---~~~~~~~r~~~~~~~~~~~g~~~~~~~-~~----~~~~~~a~~~~~~lg~-~~~~vD~~~~~-~g~~~v~EvN~ 252 (280)
T TIGR02144 183 IGD---EAIAAIYRYSNHWRTNTARGGKAEPCP-LD----EEVEELAVKAAEAVGG-GVVAIDIFESK-ERGLLVNEVNH 252 (280)
T ss_pred ECC---EEEEEEEEcCCchhhhhhcCCceeccC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCEEEEEEeC
Confidence 643 3333222211100111000 0112222 23 4578899999999996 68899999983 66899999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHc
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~ 392 (2267)
|++... ++..+|+|+.+..++.+.
T Consensus 253 ~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 253 VPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred Ccchhh--hhHhhCCCHHHHHHHHHH
Confidence 987643 456899999999998764
No 93
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.82 E-value=2.1e-18 Score=212.22 Aligned_cols=279 Identities=13% Similarity=0.162 Sum_probs=188.8
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 35 ~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
+.+.++.....+ -+|..+ ++..++.++++|++.|++++ ++....+. ..-...+++|+++.+...
T Consensus 7 ~~~~~~~y~~~~--~~i~~~-~shsaL~I~~gAkeeGf~ti---------~v~~~~~~-~~y~~~~~~De~i~v~~~--- 70 (358)
T PRK13278 7 ILEILKKYDLDN--ITIATI-GSHSSLQILKGAKKEGFRTI---------AICKKKRE-VFYKRFPVADEFIIVDDF--- 70 (358)
T ss_pred HHHHHHhcCccc--ceEEEE-ecccHHHHHHHHHHCCCeEE---------EEEeCCCc-cccccccccceEEEEcch---
Confidence 445555443221 134444 46789999999999999885 44443332 334667789999988421
Q ss_pred CCccCHHHHHHHHHHcCCCE-EEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDA-VWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDa-V~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~ 193 (2267)
.+-.|.+...++++. ++ ++|. |....... .+.+.+.++++. |+.++++...||..++++++++|||+|++..
T Consensus 71 ~di~~~~~~~~l~~~---~~iiIp~-gs~v~y~~-~d~l~~~~~p~~-gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~~- 143 (358)
T PRK13278 71 SDILNEAVQEKLREM---NAILIPH-GSFVAYLG-LENVEKFKVPMF-GNREILRWEADRDKERKLLEEAGIRIPRKYE- 143 (358)
T ss_pred hhhcCHHHHHHHhhc---CcEEEeC-CCcceeec-HHHHHHCCCCcC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCEeC-
Confidence 111334444444444 44 4444 44444333 344446777765 4888999999999999999999999999632
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh---CCCCc
Q 000092 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE---VPGSP 270 (2267)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e---~~~~~ 270 (2267)
+.+ .++||+|+||..|.||+|+++|+|.+|+.++++.+.+. .....
T Consensus 144 ------------------------~~~-------~i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~ 192 (358)
T PRK13278 144 ------------------------SPE-------DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEE 192 (358)
T ss_pred ------------------------CHH-------HcCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCe
Confidence 333 25799999999999999999999999999999987531 12568
Q ss_pred EEEEEeccccceeeEEEEEcC-CCCE--EEecccccc---cccc-----------cceE--EEecCCCCCCHHHHHHHHH
Q 000092 271 IFIMKVASQSRHLEVQLLCDQ-YGNV--AALHSRDCS---VQRR-----------HQKI--IEEGPITVAPLETVKKLEQ 331 (2267)
Q Consensus 271 I~VEeyI~g~rhieVqvl~D~-~G~v--i~l~~Rdcs---vqrr-----------~qKi--ieeaPa~~l~~e~~~eL~~ 331 (2267)
++||||+.| .++++++|... +|.+ +.+-.|-.+ ...| +... ...-|+. +.+.+.+++.+
T Consensus 193 ~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~-~resll~~v~~ 270 (358)
T PRK13278 193 AIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVV-LRESLLPQVFE 270 (358)
T ss_pred EEEEecCCC-cEEEEEEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEecceecc-chHhHHHHHHH
Confidence 999999987 69999998742 2443 332222111 0011 0001 1123443 56677788888
Q ss_pred HHHHHHHH----c--CceeeeEEEEEEEccCCcEEEeeeCccCcC
Q 000092 332 AARRLAKC----V--NYVGAATVEYLYSMETGEYYFLELNPRLQV 370 (2267)
Q Consensus 332 ~A~rla~a----L--Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqg 370 (2267)
.+.+++++ + |..|+.++|+++++ ++++|++|+|||++|
T Consensus 271 ~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~-d~~~~V~Eis~R~~g 314 (358)
T PRK13278 271 YGERFVETSKELVPPGMIGPFCLESVVTD-NLEIVVFEISARIVA 314 (358)
T ss_pred HHHHHHHHHHHhcCccccCCceEEEEEcC-CCCEEEEEEeCcccC
Confidence 88888887 4 66799999999984 788999999999955
No 94
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=99.80 E-value=7.9e-19 Score=207.68 Aligned_cols=197 Identities=18% Similarity=0.204 Sum_probs=156.6
Q ss_pred CccCCC----CCCChHHHhcccccCCCCcccccccCCCceeccc--------cc--------------------cceEEE
Q 000092 1852 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--------GW--------------------ARTVVT 1899 (2267)
Q Consensus 1852 ~~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~--------~~--------------------a~~vVt 1899 (2267)
..++|. ..-.+|++|+. |+|+|||.|+.. .| +++|||
T Consensus 57 ~~vcp~c~~h~rltAreRI~~-----------L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVt 125 (296)
T CHL00174 57 MNICEQCGYHLKMSSSDRIEL-----------LIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQT 125 (296)
T ss_pred CCCCCCCCCCcCCCHHHHHHH-----------HccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEE
Confidence 345665 66788999997 899999999843 22 379999
Q ss_pred EEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCch
Q 000092 1900 GRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQ 1979 (2267)
Q Consensus 1900 G~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~ 1979 (2267)
|+|+|+|+||.|+++|++++ ||+++...++|++|+++.|.+.++|||+|.+++|
T Consensus 126 G~G~I~Gr~v~v~a~Dftf~---------------------gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGG----- 179 (296)
T CHL00174 126 GIGQLNGIPVALGVMDFQFM---------------------GGSMGSVVGEKITRLIEYATNESLPLIIVCASGG----- 179 (296)
T ss_pred EEEEECCEEEEEEEECCccc---------------------ccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCC-----
Confidence 99999999999999999887 9999999999999999999999999999999999
Q ss_pred hhhhhchHH--HHHHHHHHH----hcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhh
Q 000092 1980 RDLFEGILQ--AGSTIVENL----RTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIK 2053 (2267)
Q Consensus 1980 ~~e~~gilk--~ga~iv~al----~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~ 2053 (2267)
..|++|+.. ..+++..++ ....+|+|++++ |.+.||.+..++. ..|+ ++|.|+|.+|+.||.-+-.
T Consensus 180 ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~--gPt~GG~aas~a~--l~Di--iiae~~A~IgfAGPrVIe~-- 251 (296)
T CHL00174 180 ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILT--SPTTGGVTASFGM--LGDI--IIAEPNAYIAFAGKRVIEQ-- 251 (296)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEc--CCCchHHHHHHHH--cccE--EEEeCCeEEEeeCHHHHHH--
Confidence 577777744 335553332 257799999999 7778877665543 3587 8899999999999943310
Q ss_pred cchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccc
Q 000092 2054 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2133 (2267)
Q Consensus 2054 ~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~i 2133 (2267)
++ .+-+| +.+++|..+.++|+||.|
T Consensus 252 --------t~-------------------------------------ge~lp----------e~fq~ae~l~~~G~vD~i 276 (296)
T CHL00174 252 --------TL-------------------------------------NKTVP----------EGSQAAEYLFDKGLFDLI 276 (296)
T ss_pred --------hc-------------------------------------CCcCC----------cccccHHHHHhCcCceEE
Confidence 00 00111 346689999999999999
Q ss_pred cCccchHHHHHHHHH
Q 000092 2134 VDWDKSRSFFCRRLR 2148 (2267)
Q Consensus 2134 i~~~~~R~~~~~~L~ 2148 (2267)
|++++.|..|.+.|+
T Consensus 277 V~r~~lr~~l~~ll~ 291 (296)
T CHL00174 277 VPRNLLKGVLSELFQ 291 (296)
T ss_pred EcHHHHHHHHHHHHH
Confidence 999999999988775
No 95
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.79 E-value=9.3e-19 Score=227.61 Aligned_cols=283 Identities=16% Similarity=0.167 Sum_probs=200.5
Q ss_pred hhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC
Q 000092 33 SEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT 112 (2267)
Q Consensus 33 ~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~ 112 (2267)
..+.++++..|..++. +-+......|.++. +++|++.+ ..++ ..+.++. |+.+++++.+
T Consensus 178 ~~l~e~a~~~G~~~i~--L~V~~~N~~Ai~fY---~klGf~~~---------~~y~--~~d~~~~-----~~~~~~g~~~ 236 (547)
T TIGR03103 178 RALAEHFQSRGCAYMD--LSVMHDNEQAIALY---EKLGFRRI---------PVFA--LKRKNAI-----NERLFSGPAP 236 (547)
T ss_pred HHHHHHHHHCCCCEEE--EEEcCCCHHHHHHH---HHCCCEEe---------eEEE--EeccCCc-----CcccccCCCc
Confidence 4455666666543321 11222335555444 56787764 3344 3344554 8999887655
Q ss_pred CCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchH-------HHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHc
Q 000092 113 NNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELP-------DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAA 183 (2267)
Q Consensus 113 ~~~~Y~dv--d~Il~iA~~~~vDaV~pG~G~~sEn~~la-------~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~a 183 (2267)
..+ +|. +.|++.|++.++++++.. +|+..+. ..|... +. .-+++.+|..++||..++++++++
T Consensus 237 ~~~--l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~g~~~~~~~~s-~~-~~~s~~ai~~~~DK~~tk~lL~~a 308 (547)
T TIGR03103 237 EAD--LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSLGGRSIRCRES-LS-ELTSAVAMSLCDDKRLTRRLVSEA 308 (547)
T ss_pred ccc--cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecCCceEEEEEec-cC-CCCCHHHHHHhcCHHHHHHHHHHc
Confidence 433 566 999999999999999944 4544442 111111 11 126889999999999999999999
Q ss_pred CCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEE-ECCHHHHHHHHHHH
Q 000092 184 NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK-VHNDDEVRALFKQV 262 (2267)
Q Consensus 184 GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~-V~s~eEL~~a~~~~ 262 (2267)
|||+|+|.. +.+.+++.++++++| |+||||..|++|+||++ +++.++|.++++.+
T Consensus 309 GIpVP~~~~-----------------------~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a 364 (547)
T TIGR03103 309 GLQVPEQQL-----------------------AGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKA 364 (547)
T ss_pred CcCCCCEEE-----------------------ECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHH
Confidence 999999876 567888889999999 69999999999999997 99999999999988
Q ss_pred HhhCCCCcEEEEEecccc--cee-------------eEEEEEcCCCCEEEecccccccccc-------------------
Q 000092 263 QGEVPGSPIFIMKVASQS--RHL-------------EVQLLCDQYGNVAALHSRDCSVQRR------------------- 308 (2267)
Q Consensus 263 ~~e~~~~~I~VEeyI~g~--rhi-------------eVqvl~D~~G~vi~l~~Rdcsvqrr------------------- 308 (2267)
.... ..++||+|++|. |++ .+++++|+++++..|.++...-.++
T Consensus 365 ~~~~--~~vlvEe~i~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~ 442 (547)
T TIGR03103 365 RQFC--DRVLLERYVPGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLA 442 (547)
T ss_pred HhcC--CcEEEEEeccCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHH
Confidence 7653 589999999885 444 6788899888888777664311100
Q ss_pred ------------cceEE--------EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc-cCCcEEEeeeCcc
Q 000092 309 ------------HQKII--------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-ETGEYYFLELNPR 367 (2267)
Q Consensus 309 ------------~qKii--------eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~-~~g~~yfLEINpR 367 (2267)
.+++. ..+.+..++.++.+++.+.|+++++++|+. .+.||++.+. ...++.|||+|.|
T Consensus 443 ~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~~~p~~~iiEvN~~ 521 (547)
T TIGR03103 443 EAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDIP-VVGIDFLVPDVTGPDYVIIEANER 521 (547)
T ss_pred HcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccCCCCCeEEEEecCC
Confidence 01110 012233345667889999999999999985 6679999862 2235799999999
Q ss_pred CcCC
Q 000092 368 LQVE 371 (2267)
Q Consensus 368 lqge 371 (2267)
++-.
T Consensus 522 Pgl~ 525 (547)
T TIGR03103 522 PGLA 525 (547)
T ss_pred cccc
Confidence 9855
No 96
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.79 E-value=1e-17 Score=202.97 Aligned_cols=308 Identities=11% Similarity=0.125 Sum_probs=212.8
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh---hccEEEEccCC
Q 000092 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR---IADQFVEVPGG 111 (2267)
Q Consensus 35 ~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr---~ADe~v~vp~~ 111 (2267)
+.+-+....... -+|..+ +...|+.+++-||+.|++|+ +++... +.-.|.+ .+|+++.+.
T Consensus 6 ~~~~~~~y~~~~--~~i~t~-~SHsal~i~~gAk~egf~t~---------~v~~~~---r~~~Y~~f~~~~d~~i~~~-- 68 (366)
T PRK13277 6 IKEILEGYDLDK--VKIGVL-ASHSALDVFDGAKDEGFRTI---------AVCQKG---RERTYREFKGIVDEVIVLD-- 68 (366)
T ss_pred HHHHHhhcCccc--cEEEEE-ecchHHHHhccHHhcCCcEE---------EEEcCC---CcchhhhhccccceEEEec--
Confidence 344444443322 145555 46899999999999999885 344332 3344444 589999984
Q ss_pred CCCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHH-HcCCeEeCCCHHH-HHHhcCHHHHHHHHHHcCCCC
Q 000092 112 TNNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLS-TKGIIFLGPPATS-MAALGDKIGSSLIAQAANVPT 187 (2267)
Q Consensus 112 ~~~~~Y~dv--d~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~-~~GI~fiGPs~ea-m~~lgDK~~~k~laq~aGVPt 187 (2267)
+|.++ +.+.+-.++. ++|+.-.|...+..-. +.++ +..+++.|+..-. .+.=+||..+..+++++|||+
T Consensus 69 ----~f~~~~~~~~~~~l~~~--n~i~iPh~sf~~y~g~-~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~L~~aGI~~ 141 (366)
T PRK13277 69 ----KFKDILSEKVQDELREE--NAIFVPNRSFAVYVGY-DAIENEFKVPIFGNRYLLRWEERTGEKNYYWLLEKAGIPY 141 (366)
T ss_pred ----chhhhhhHHHHHHHHHC--CeEEecCCCeEEEecH-HHHhhcCCCCcccCHHHhhhhhccCHHHHHHHHHHcCCCC
Confidence 45432 3455555554 5555444544443222 4455 4778888875432 233488999888999999999
Q ss_pred CCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCC--CcCeEEECCHHHHHHHHHHHHhh
Q 000092 188 LPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG--GKGIRKVHNDDEVRALFKQVQGE 265 (2267)
Q Consensus 188 pp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG--GkGIr~V~s~eEL~~a~~~~~~e 265 (2267)
|+... ++ +++.|||||||..|.| |+|+++++|.+|+..........
T Consensus 142 Pk~~~-------------------------~p-------~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~ 189 (366)
T PRK13277 142 PKLFK-------------------------DP-------EEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKA 189 (366)
T ss_pred ceeec-------------------------Cc-------cccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhc
Confidence 98543 22 4678999999999999 99999999999998887665421
Q ss_pred C-----CCCcEEEEEeccccceeeEEEEEcC-CCCEEE--ecccccc-c---cc---ccc---------eEEEecCCCCC
Q 000092 266 V-----PGSPIFIMKVASQSRHLEVQLLCDQ-YGNVAA--LHSRDCS-V---QR---RHQ---------KIIEEGPITVA 321 (2267)
Q Consensus 266 ~-----~~~~I~VEeyI~g~rhieVqvl~D~-~G~vi~--l~~Rdcs-v---qr---r~q---------KiieeaPa~~l 321 (2267)
. .-...+||||+.| .|+.+++|.+. +|++.. +..|..+ + -| +.| -.+.+.|.. +
T Consensus 190 g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t-~ 267 (366)
T PRK13277 190 GVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT-I 267 (366)
T ss_pred CcccccccccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcCcccc-c
Confidence 0 1134579999987 69999999983 675443 3332111 0 00 101 122245555 5
Q ss_pred CHHHHHHHHHHHHHHHHHcC------ceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHH--HHcC
Q 000092 322 PLETVKKLEQAARRLAKCVN------YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVA--VGMG 393 (2267)
Q Consensus 322 ~~e~~~eL~~~A~rla~aLG------y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~--iA~G 393 (2267)
.+.+.+++.+.+.+++++++ ..|++++|++++ +++++|++|+|||++|..++. +.+|.|.+.+.+. +.+|
T Consensus 268 rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~-~d~~~~V~EInpR~gGGtnl~-~~aGs~y~~l~~~~~ms~G 345 (366)
T PRK13277 268 RESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVT-PDLDFVVYDVAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTG 345 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEc-CCCcEEEEEEcCCcCCCccce-eecCCCcHHHHhcCccccC
Confidence 66788999999999999976 689999999998 478999999999999999877 4689999999999 9999
Q ss_pred CCCCCchhhhh
Q 000092 394 IPLWQIPEIRR 404 (2267)
Q Consensus 394 ~pL~~ipdir~ 404 (2267)
.++. ++|+.
T Consensus 346 rRIa--~Eik~ 354 (366)
T PRK13277 346 RRIA--MEIKR 354 (366)
T ss_pred Ccch--HHHHH
Confidence 8876 34543
No 97
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.79 E-value=1.7e-18 Score=197.85 Aligned_cols=197 Identities=21% Similarity=0.291 Sum_probs=161.8
Q ss_pred CccCCC----CCCChHHHhcccccCCCCcccccccCCCceecccc--------------cc-------------ceEEEE
Q 000092 1852 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG--------------WA-------------RTVVTG 1900 (2267)
Q Consensus 1852 ~~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~--------------~a-------------~~vVtG 1900 (2267)
..++|. ..-+.+++|+. |+|.|||.|+... |. ++||+|
T Consensus 47 ~~vcp~c~~h~ri~A~~Ri~~-----------llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg 115 (294)
T COG0777 47 LKVCPKCGHHMRISARERLEA-----------LLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTG 115 (294)
T ss_pred hhcccccCcccccCHHHHHHH-----------hhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEE
Confidence 345665 67788999987 8999999998652 21 799999
Q ss_pred EEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchh
Q 000092 1901 RARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQR 1980 (2267)
Q Consensus 1901 ~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~ 1980 (2267)
.|+|+|.||.+++.|+.|+ ||+++...++|++|+++.|...++|+|+|..++| .
T Consensus 116 ~g~i~G~pvv~av~df~Fm---------------------gGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGG-----A 169 (294)
T COG0777 116 EGTINGLPVVLAVMDFAFM---------------------GGSMGSVVGEKITRAIERAIEDKLPLVLFSASGG-----A 169 (294)
T ss_pred eeEECCeEEEEEEEecccc---------------------ccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcc-----h
Confidence 9999999999999999988 9999999999999999999999999999999998 8
Q ss_pred hhhhchHHH--HHH---HHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcc
Q 000092 1981 DLFEGILQA--GST---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFR 2055 (2267)
Q Consensus 1981 ~e~~gilk~--ga~---iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r 2055 (2267)
.|++|++.. .|+ .+..++++..|.|+|++ .+..||.-+.++. -.|+ ++|.|+|.+|+.||.-+
T Consensus 170 RMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt--~PTtGGVsASfA~--lGDi--~iAEP~AlIGFAGpRVI------ 237 (294)
T COG0777 170 RMQEGILSLMQMAKTSAALKRLSEAGLPYISVLT--DPTTGGVSASFAM--LGDI--IIAEPGALIGFAGPRVI------ 237 (294)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEec--CCCccchhHhHHh--ccCe--eecCcccccccCcchhh------
Confidence 999998753 344 45557778899999999 7889986555553 3577 99999999999999433
Q ss_pred hhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccC
Q 000092 2056 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135 (2267)
Q Consensus 2056 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~ 2135 (2267)
++.-.+-+| |.+++++.+.++|+||.||+
T Consensus 238 -----------------------------------------EQTire~LP----------egfQ~aEfLlehG~iD~iv~ 266 (294)
T COG0777 238 -----------------------------------------EQTIREKLP----------EGFQTAEFLLEHGMIDMIVH 266 (294)
T ss_pred -----------------------------------------hhhhcccCC----------cchhhHHHHHHcCCceeeec
Confidence 111112233 66889999999999999999
Q ss_pred ccchHHHHHHHHH
Q 000092 2136 WDKSRSFFCRRLR 2148 (2267)
Q Consensus 2136 ~~~~R~~~~~~L~ 2148 (2267)
..+.|..+...|.
T Consensus 267 R~elr~tla~ll~ 279 (294)
T COG0777 267 RDELRTTLASLLA 279 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888876554
No 98
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.79 E-value=2.5e-18 Score=192.22 Aligned_cols=166 Identities=22% Similarity=0.388 Sum_probs=137.9
Q ss_pred HHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEee-cCCCCCcCeEEECCHHHHHHH
Q 000092 180 AQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKA-SWGGGGKGIRKVHNDDEVRAL 258 (2267)
Q Consensus 180 aq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKP-s~GgGGkGIr~V~s~eEL~~a 258 (2267)
++++|+|+|||.. +.+.+++..+++++|||+|+|+ ..|..|||..++++.+|+..+
T Consensus 1 l~~~gip~~~~~~-----------------------i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a 57 (172)
T PF02222_consen 1 LDELGIPTAPYAT-----------------------IDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKA 57 (172)
T ss_dssp HHHTT--B-EEEE-----------------------ESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHH
T ss_pred CcccCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHH
Confidence 5789999999987 8899999999999999999995 556699999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 000092 259 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAK 338 (2267)
Q Consensus 259 ~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~ 338 (2267)
++.+ ...++++|+|++..+|++|.+.++.+|++..+... +.+++.+......+|+. +++++.+++.+.|.++++
T Consensus 58 ~~~~----~~~~~ilE~~v~f~~EiSvivaR~~~G~~~~yp~~-en~~~~~il~~s~~Pa~-i~~~~~~~a~~ia~~i~~ 131 (172)
T PF02222_consen 58 WQEL----GGGPCILEEFVPFDREISVIVARDQDGEIRFYPPV-ENVHRDGILHESIAPAR-ISDEVEEEAKEIARKIAE 131 (172)
T ss_dssp HHHT----TTSCEEEEE---ESEEEEEEEEEETTSEEEEEEEE-EEEEETTEEEEEEESCS-S-HHHHHHHHHHHHHHHH
T ss_pred HHhc----CCCcEEEEeccCCcEEEEEEEEEcCCCCEEEEcCc-eEEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHH
Confidence 9887 36799999999999999999999999987765433 56677776666778987 889999999999999999
Q ss_pred HcCceeeeEEEEEEEccCCc-EEEeeeCccCcCCccee
Q 000092 339 CVNYVGAATVEYLYSMETGE-YYFLELNPRLQVEHPVT 375 (2267)
Q Consensus 339 aLGy~Ga~tVEfl~d~~~g~-~yfLEINpRlqgehpvt 375 (2267)
+|+|+|+..|||+++. +|+ +||.|+.||+..+..+|
T Consensus 132 ~l~~vGv~~VE~Fv~~-~g~~v~vNEiaPRpHnSGh~T 168 (172)
T PF02222_consen 132 ALDYVGVLAVEFFVTK-DGDEVLVNEIAPRPHNSGHWT 168 (172)
T ss_dssp HHTSSEEEEEEEEEET-TSTEEEEEEEESS--GGGGGH
T ss_pred HcCcEEEEEEEEEEec-CCCEEEEEeccCCccCcccEe
Confidence 9999999999999994 676 99999999998775555
No 99
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.77 E-value=5.4e-18 Score=185.16 Aligned_cols=70 Identities=27% Similarity=0.449 Sum_probs=67.4
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
.+++.|+|||||+|++|+|++||+|++||+|+++|+|||+++|.||.+|+|..+ +++|+.|..|++|++|
T Consensus 82 ~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 82 AGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 357889999999999999999999999999999999999999999999999988 9999999999999987
No 100
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.75 E-value=2.2e-17 Score=190.12 Aligned_cols=186 Identities=20% Similarity=0.278 Sum_probs=132.2
Q ss_pred HHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHH--HHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHH
Q 000092 179 IAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEE--AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVR 256 (2267)
Q Consensus 179 laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~ee--a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~ 256 (2267)
+++++|||||+|.. +. -.+... .......++||++|||..+|+|.||.+|+|.+||.
T Consensus 1 l~~~~gI~tp~~~~----~~-----------------~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~ 59 (203)
T PF07478_consen 1 LLKSAGIPTPPYVV----VK-----------------KNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELE 59 (203)
T ss_dssp HHHHTT-BB-SEEE----EE-----------------TTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHH
T ss_pred ChhhcCCCCCCEEE----Ee-----------------cccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHH
Confidence 57899999999976 10 111211 34567889999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccc-----ccccc----ceEEEecCCCCCCHHHHH
Q 000092 257 ALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS-----VQRRH----QKIIEEGPITVAPLETVK 327 (2267)
Q Consensus 257 ~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcs-----vqrr~----qKiieeaPa~~l~~e~~~ 327 (2267)
.+++++... +++++||+||+| +|++|-+++++...+....+.... ....+ .......|+. +++++.+
T Consensus 60 ~ai~~~~~~--~~~vlVEefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~ 135 (203)
T PF07478_consen 60 EAIEKAFKY--DDDVLVEEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQE 135 (203)
T ss_dssp HHHHHHTTT--HSEEEEEE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHH
T ss_pred HHHHHHhhh--cceEEEEeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHH
Confidence 999998743 579999999965 999999999876555444332221 11111 2233445665 8899999
Q ss_pred HHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 328 eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
+|.+.|.++.+++|.+|.+.|||+++ ++|++||+|+|+-++-+. |..-...|+++.++.-++
T Consensus 136 ~i~~~a~~a~~~lg~~~~~RiD~rv~-~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 136 KIKEIAKKAFKALGCRGYARIDFRVD-EDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEE-TTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEec-cCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999998 478999999999887431 323334577766655443
No 101
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=5.3e-16 Score=188.75 Aligned_cols=236 Identities=19% Similarity=0.277 Sum_probs=183.0
Q ss_pred cCCCEEEe-CCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWP-GWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~p-G~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.++| +.|+..|+-.+...++-.|++++|++..+-..++||..+|.+++..|+|+++|..- ..
T Consensus 60 ~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~-------------~~ 126 (317)
T COG1181 60 QKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVAL-------------TR 126 (317)
T ss_pred ccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeee-------------ec
Confidence 45677776 46788899999999999999999999999999999999999999999999998760 00
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
... +.....+..+..+||++|||...|++.|+.+|++.+|+..+.+.+... +..+++|+++. +++++|.++
T Consensus 127 -----~~~-~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~--d~~vl~e~~~~-~rei~v~vl 197 (317)
T COG1181 127 -----DEY-SSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY--DRDVLREQGIT-GREIEVGVL 197 (317)
T ss_pred -----ccc-hhHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh--CCceeeccCCC-cceEEEEec
Confidence 000 223344666789999999999999999999999999999987777654 67899999998 699999999
Q ss_pred EcCCCCEEEecc-----cccccccccceEEE------ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCC
Q 000092 289 CDQYGNVAALHS-----RDCSVQRRHQKIIE------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETG 357 (2267)
Q Consensus 289 ~D~~G~vi~l~~-----Rdcsvqrr~qKiie------eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g 357 (2267)
.+.. ....+.. ..-.+.-+..|.+. ..|+ .+++++.+++.+.|.++.+++|..|.+.+||++++.+|
T Consensus 198 ~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g 275 (317)
T COG1181 198 GNDY-EEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEG 275 (317)
T ss_pred CCcc-cceecCceEEecCCCeEEeeeccccCCCCceeeCCC-CCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCC
Confidence 8854 2222211 11123333344444 3355 38999999999999999999999999999999994458
Q ss_pred cEEEeeeCccCcCC-c---ceehhhhcCCHHHHHHH
Q 000092 358 EYYFLELNPRLQVE-H---PVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 358 ~~yfLEINpRlqge-h---pvtE~vtGvDL~~~qL~ 389 (2267)
++|++|+|+.+|-. + |..-...|++...+...
T Consensus 276 ~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~ 311 (317)
T COG1181 276 EFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLR 311 (317)
T ss_pred CEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHH
Confidence 99999999999833 2 44444456666655444
No 102
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.66 E-value=1.5e-16 Score=172.57 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=68.3
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
+++.|+|||+|++++++|++||+|++||+|++||||||+|+|.||.+|+|+.| +++||.|+.||+|++|++
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999 899999999999999864
No 103
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.65 E-value=1.6e-16 Score=176.83 Aligned_cols=158 Identities=20% Similarity=0.312 Sum_probs=87.7
Q ss_pred hcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEE
Q 000092 170 LGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249 (2267)
Q Consensus 170 lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V 249 (2267)
|.||..+.+.++++|||+|..... .......+|+|+||..|.||.||+++
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~------------------------------~~~~~~~~~~viKp~~G~Gg~~i~~~ 50 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRD------------------------------SEPEPIDGPWVIKPRDGAGGEGIRIV 50 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------------------------------------EESS--SSSEEEEESS-------B--
T ss_pred CCCHHHHHHHHHccCCCCCCcccc------------------------------ccccccCCcEEEEeCCCCCCCCeEEE
Confidence 689999999999999999932220 00112378999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccc--cccceEEEecCCCCCCHHHHH
Q 000092 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQ--RRHQKIIEEGPITVAPLETVK 327 (2267)
Q Consensus 250 ~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvq--rr~qKiieeaPa~~l~~e~~~ 327 (2267)
++.+++........ ++|+|++| .++++.+++++.+..+..+.|...-. .+...-....|.. ....+
T Consensus 51 ~~~~~~~~~~~~~~--------i~Qe~i~G-~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~ 118 (161)
T PF02655_consen 51 DSEDELEEFLNKLR--------IVQEFIEG-EPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKE 118 (161)
T ss_dssp SS--TTE---------------EEEE---S-EEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHH
T ss_pred CCchhhccccccce--------EEeeeeCC-EEeEEEEEEeCCceEEEEechHhhccccceeeecccccccC---CchHH
Confidence 99998877654332 99999987 79999999987544443333321110 0011122234543 34488
Q ss_pred HHHHHHHHHHHHc-CceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 328 KLEQAARRLAKCV-NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 328 eL~~~A~rla~aL-Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
++.+.+.++++++ |+.|...|||+++ ++++|+||||||++++
T Consensus 119 ~~~~~~~~i~~~l~gl~G~~giD~I~~--~~~~~viEINPR~t~S 161 (161)
T PF02655_consen 119 EIIELARRIAEALPGLRGYVGIDFILD--DGGPYVIEINPRFTGS 161 (161)
T ss_dssp HHHHHHHHHHTTSTT--EEEEEEEEES--S-SEEEEEEESS--GG
T ss_pred HHHHHHHHHHHHcCCCeeeEeEEEEEe--CCcEEEEEEcCCCCCC
Confidence 9999999999999 9999999999998 6899999999999863
No 104
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.65 E-value=2.9e-15 Score=169.42 Aligned_cols=167 Identities=20% Similarity=0.285 Sum_probs=130.6
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcE-EEeecCCCCCcCeEEE
Q 000092 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPA-MIKASWGGGGKGIRKV 249 (2267)
Q Consensus 171 gDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPV-VIKPs~GgGGkGIr~V 249 (2267)
++|..+|++++++||||++|.. +++.+++.+++++.++|+ ||||..-.+||||.++
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~~-----------------------f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~ 57 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYKV-----------------------FTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIA 57 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EEE-----------------------ESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCeeE-----------------------ECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEe
Confidence 4899999999999999999876 789999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE-----------
Q 000092 250 HNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE----------- 314 (2267)
Q Consensus 250 ~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie----------- 314 (2267)
++.+|..++++++.... .+++++||+|+.| +|+++.++.|+. +++.+. .-+.|.++.+
T Consensus 58 ~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~lp-----~aqD~Kr~~dgd~GpnTGGMG 130 (194)
T PF01071_consen 58 DDREEALEALREIFVDRKFGDAGSKVVIEEFLEG-EEVSLFALTDGK-NFVPLP-----PAQDHKRLFDGDTGPNTGGMG 130 (194)
T ss_dssp SSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S-EEEEEEEEEESS-EEEEEE-----EBEEEEEEETTTEEEEESESE
T ss_pred CCHHHHHHHHHHhccccccCCCCCcEEEEeccCC-eEEEEEEEEcCC-eEEECc-----chhccccccCCCCCCCCCCcc
Confidence 99999999999988632 2468999999987 899999999975 344432 2244544432
Q ss_pred -ecCCCCCCHHHHHHHHH-HHHHHHHHc-----CceeeeEEEEEEEccCCcEEEeeeCccCc
Q 000092 315 -EGPITVAPLETVKKLEQ-AARRLAKCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQ 369 (2267)
Q Consensus 315 -eaPa~~l~~e~~~eL~~-~A~rla~aL-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlq 369 (2267)
.+|.+.++++..+++.+ ....+.++| .|+|+..+.++++ ++++++||.|.|++
T Consensus 131 a~sp~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt--~~Gp~vlEfN~RfG 190 (194)
T PF01071_consen 131 AYSPVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLT--EDGPKVLEFNVRFG 190 (194)
T ss_dssp EEESTTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEE--TTEEEEEEEESSGS
T ss_pred ceeecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEe--CCCcEEEEEeCCCC
Confidence 25888888888777765 555555555 8899999999999 67799999999997
No 105
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=99.65 E-value=5.2e-16 Score=185.88 Aligned_cols=194 Identities=20% Similarity=0.158 Sum_probs=146.9
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
++.+.||+.+.+|.-|+.+.+- . +|.|| +| +|..| ++.+||+|+
T Consensus 62 ~~v~~aR~~~Rp~~~d~i~~l~----------------d-----~f~El-----~g---------d~~~~-dd~avV~Gl 105 (322)
T CHL00198 62 QRLHLVRQSERPTTLDYIPYIL----------------D-----EWIEL-----HG---------DRGGS-DDPALVGGI 105 (322)
T ss_pred HHHHhhcCCCCCCHHHHHHHHh----------------H-----HHHHH-----cc---------ccccC-CCCceEEEE
Confidence 5889999999999999998772 1 46776 45 33323 345699999
Q ss_pred EEecCccccCCcEEEEEEeccc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T--------~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|++||.+ ..+|+.++...+|..|++++|.+.++|+|+|.|++||+++...+-
T Consensus 106 gri------~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~----- 174 (322)
T CHL00198 106 GKI------NGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEK----- 174 (322)
T ss_pred EEE------CCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHH-----
Confidence 987 9999999999995 589999999999999999999999999999999999999843111
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc--ccccccccccccccCc
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT--GSGAIAGAYSRAYKET 1743 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~--~sG~iag~~s~a~~~i 1743 (2267)
.|. .+ .+.+|+. .++ .|
T Consensus 175 ----------~G~----------~~------------------------------aiar~l~~~a~~-----------~V 193 (322)
T CHL00198 175 ----------LGQ----------GE------------------------------AIAVNLREMFSF-----------EV 193 (322)
T ss_pred ----------HhH----------HH------------------------------HHHHHHHHHHcC-----------CC
Confidence 111 00 0011211 111 37
Q ss_pred eEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccccccc---ccCCc-cccccccCceEEEec
Q 000092 1744 FTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSH---MQLGG-PKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1744 ptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~---~~lGG-~~i~~~nGv~d~~v~ 1815 (2267)
|+||+|+|+|.|||||...++|+++|.+++.+.+.+|+.--..+-++.-..+ +.++= ++=+.+.|++|.+++
T Consensus 194 P~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~a~~aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 194 PIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKKSLDAAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred CEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcchhhHHHHHHHcCCCHHHHHhCCCCeEecc
Confidence 9999999999999999999999999999999999999988877766541101 11221 122357999999885
No 106
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.64 E-value=5.8e-16 Score=197.26 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=146.6
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
++...||+.+++|..||...+- + +|.|| +| +|.- .++.+||+|+
T Consensus 150 erV~~aR~p~RP~~~Dyi~~i~------------------d---df~EL-----~G---------dr~~-~dD~aIVtGl 193 (762)
T PLN03229 150 QRVNIARHPNRPTFLDHIFNIT------------------D---KFVEL-----HG---------DRAG-YDDPAIVTGI 193 (762)
T ss_pred HHHHHHhCCCCCcHHHHHHHHH------------------H---HHHHh-----cC---------cccC-CCCCCeEEEE
Confidence 4788999999999999997662 1 56676 44 2332 2334799999
Q ss_pred EEecCccccCCcEEEEEEecccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T~--------~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|+|||+++ .+|+..+...+|..|++++|.+.++|+|+|.|++||+++...+..
T Consensus 194 GRI------dGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~pG~~AEe~---- 263 (762)
T PLN03229 194 GTI------DGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEEL---- 263 (762)
T ss_pred EEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCchhHHH----
Confidence 987 99999999999974 899999999999999999999999999999999999998332211
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccc-cccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG-SGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~-sG~iag~~s~a~~~ip 1744 (2267)
|. .+ .+..|+.. ++ -.||
T Consensus 264 -----------Gq----------~~------------------------------aIArnl~amas----------l~VP 282 (762)
T PLN03229 264 -----------GQ----------GE------------------------------AIAHNLRTMFG----------LKVP 282 (762)
T ss_pred -----------hH----------HH------------------------------HHHHHHHHHhC----------CCCC
Confidence 10 00 00112221 11 1379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccccccc---ccCCc-cccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSH---MQLGG-PKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~---~~lGG-~~i~~~nGv~d~~v~ 1815 (2267)
+||+|+|+|.|||||.+.+||+++|.+++.++++||..--..+-++.-..+ +.++= ++=+...|++|.+++
T Consensus 283 ~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 283 IVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAPKAAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred EEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCeeecc
Confidence 999999999999999999999999999999999999988887766541111 11211 122457999999886
No 107
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=173.65 Aligned_cols=297 Identities=18% Similarity=0.177 Sum_probs=209.8
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
-|+|+|+......+.||..+.-+.+. +...|.-.. .+.|++.....-++. ..+.. +..+.++|++
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~-----------~ls~d~plP-t~Sr~vr~t~~w~gp-hd~ga--iafLrd~Aek 69 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVL-----------ALSADGPLP-TYSRIVRVTTHWNGP-HDEGA--IAFLRDFAEK 69 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEE-----------EEecCCCCc-chhhhheeeeccCCC-CcccH--HHHHHHHHhh
Confidence 48899988777777888766543332 333343222 388888888777653 23333 8899999999
Q ss_pred cCCCE---EEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 130 TRVDA---VWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 130 ~~vDa---V~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
++-.. |-.|-|..--.....+.|.+. ..++-|+....+.+.+|-.....|.+.|+|.|.+..
T Consensus 70 hglkg~LLva~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~-------------- 134 (415)
T COG3919 70 HGLKGYLLVACGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTYL-------------- 134 (415)
T ss_pred cCcCceEEEecCCceeeehHhhHHHHHHH-hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceEE--------------
Confidence 97653 333333222222233444442 334559999999999999999999999999999776
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCC-----CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG-----GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG-----GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
++|..+. .+.++-||+|+||-.|+| -+....+.+.+|+..++..+.++...+.++||+||+|+.
T Consensus 135 ---------v~S~~d~--~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGg 203 (415)
T COG3919 135 ---------VNSEIDT--LVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGG 203 (415)
T ss_pred ---------ecchhhh--hhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCC
Confidence 5665554 456789999999999883 445567889999999999999988778999999999986
Q ss_pred ee--eEEEEEcCCCCEEEecccccccccccceEEEecC-CC--CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 282 HL--EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP-IT--VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 282 hi--eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaP-a~--~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
|- +...+-|+ |+.++- |+-.|-.|.....+- +. .+.+ .+++.++|.++.+.+++.|...|||++|+.|
T Consensus 204 E~qfsyaAlw~~-g~pvae----ftarr~rqyPvdfgytst~vevvD--n~Q~i~aar~~L~si~htGlvevefK~D~RD 276 (415)
T COG3919 204 ENQFSYAALWDK-GHPVAE----FTARRLRQYPVDFGYTSTVVEVVD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRD 276 (415)
T ss_pred cccchHHHHHhC-CCchhh----hhcchhhcCCcccccccEEEEecC--cHHHHHHHHHHHHhhcccceEEEEEEecCCC
Confidence 53 33344454 455433 444333332221110 00 1111 4688999999999999999999999999999
Q ss_pred CcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCC
Q 000092 357 GEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395 (2267)
Q Consensus 357 g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~p 395 (2267)
|.+.++|+|||.+-..-+.. +.|+||-...+.+..+.+
T Consensus 277 Gs~KlldvNpRpw~wfgl~t-aaG~nLg~~Lwa~~~~~~ 314 (415)
T COG3919 277 GSYKLLDVNPRPWRWFGLVT-AAGYNLGRYLWADRINNE 314 (415)
T ss_pred CceeEEeecCCCcceeeEEe-cccccccceEEeeecCCc
Confidence 99999999999987665543 589999888877766653
No 108
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.7e-14 Score=176.08 Aligned_cols=227 Identities=18% Similarity=0.236 Sum_probs=161.3
Q ss_pred cCCCEEEeCCCcCCCC-CchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGWGHASEI-PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn-~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
...|++++--+..... -.+.+.++..|..++ ++++++..|+||..+.+++..+|+|+|+|..
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i---------------- 139 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLI---------------- 139 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEE----------------
Confidence 3568888654322222 334457788899888 9999999999999999999999999999876
Q ss_pred ccccccccCCHHHHHHH-HhhhCCcEEEeecCCCCCcCeEEECCHH-HHHHHHHHHHhhCCCCcEEEEEeccccc-eeeE
Q 000092 209 DVYRQACVYTTEEAIAS-CQVVGYPAMIKASWGGGGKGIRKVHNDD-EVRALFKQVQGEVPGSPIFIMKVASQSR-HLEV 285 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~-a~~IGyPVVIKPs~GgGGkGIr~V~s~e-EL~~a~~~~~~e~~~~~I~VEeyI~g~r-hieV 285 (2267)
+.+.++.... .+.+|||+|+||.+|+||+||.+|++.+ ++.+..+...... ...+++|+|++.+. ..-.
T Consensus 140 -------~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~-~~~~ivQeyi~~~~~~~rr 211 (318)
T COG0189 140 -------TRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEG-RKLIIVQEYIPKAKRDDRR 211 (318)
T ss_pred -------EcCHHHHHHHHHHhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccc-cceEehhhhcCcccCCcEE
Confidence 5666555555 4557899999999999999999999999 8888877766442 13699999998765 4444
Q ss_pred EEEEcCCCCEEEecccccccccc----cceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRR----HQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr----~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
-+++| |.+++.+ ..+|. +.+-.-..-....+.++-+++++.|+++++++|. +...||++.+ ++++|+
T Consensus 212 ivv~~--~~~~~~y----~~~R~~~~~~~R~N~a~Gg~~e~~~l~~e~~elA~kaa~~lGl-~~~GVDiie~--~~g~~V 282 (318)
T COG0189 212 VLVGG--GEVVAIY----ALARIPASGDFRSNLARGGRAEPCELTEEEEELAVKAAPALGL-GLVGVDIIED--KDGLYV 282 (318)
T ss_pred EEEeC--CEEeEEe----eeccccCCCCceeeccccccccccCCCHHHHHHHHHHHHHhCC-eEEEEEEEec--CCCcEE
Confidence 45555 4555532 12221 1111111111112223346788999999999986 6777999998 788999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHH
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA 391 (2267)
+|+|.-+.+-+. .+..+|+|.....++..
T Consensus 283 ~EVN~sP~~~~~-i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 283 TEVNVSPTGKGE-IERVTGVNIAGLIIDAI 311 (318)
T ss_pred EEEeCCCccccc-hhhhcCCchHHHHHHHH
Confidence 999996554443 44568888888777653
No 109
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.61 E-value=4.4e-15 Score=191.62 Aligned_cols=151 Identities=20% Similarity=0.182 Sum_probs=116.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCC-ceecccccc----------ceEEEEEEEECCeEEEEEEEeccccccccCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDS-FVETLEGWA----------RTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1926 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gS-F~E~~~~~a----------~~vVtG~arl~G~pVgViA~e~~~~~~~~PAd 1926 (2267)
....+|++|+. |||+|| |+|+...++ ++||||+|+|+|+||+|+++|++++
T Consensus 80 gkltaReRI~~-----------LlD~gS~F~El~~lag~~~y~~~~~~dgVVtG~G~V~Gr~V~v~a~D~tv~------- 141 (569)
T PLN02820 80 NKLLPRERIDR-----------LLDPGSPFLELSQLAGHELYGEDLPSGGIVTGIGPVHGRLCMFVANDPTVK------- 141 (569)
T ss_pred CCCCHHHHHHH-----------HcCCCCCeEEchhhccCCcccccCCCCeEEEEEEEECCEEEEEEEECCCcc-------
Confidence 56789999997 899999 999875433 6799999999999999999998766
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHH---HhcCCCC
Q 000092 1927 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN---LRTYKQP 2003 (2267)
Q Consensus 1927 pa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a---l~~~~vP 2003 (2267)
||++++.+++|++|+++.|.++++|||+|+|++|.......+........++++.+ ++...+|
T Consensus 142 --------------GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP 207 (569)
T PLN02820 142 --------------GGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIP 207 (569)
T ss_pred --------------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999994322122222222234566655 5556799
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCc
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+|++|+ |.++.||+|.. .+..+. +.+.+++.+++.||
T Consensus 208 ~Isvv~-G~~~gGgAy~~---a~~D~v--im~~~~a~i~~aGP 244 (569)
T PLN02820 208 QIALVL-GSCTAGGAYVP---AMADES--VIVKGNGTIFLAGP 244 (569)
T ss_pred EEEEEe-CCCChHHHHHH---HhCCce--EEecCCcEEEecCH
Confidence 999999 33444566643 222333 55678999999999
No 110
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=99.61 E-value=1.4e-14 Score=170.88 Aligned_cols=194 Identities=17% Similarity=0.132 Sum_probs=144.2
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|.+.||+.|...+.|+++.+- . +|.|| +| +|..+ .+.+||+++
T Consensus 6 ~~v~~ar~~~r~~are~I~~L~----------------D-----~F~El-----~g---------~~~~~-~d~~vItG~ 49 (256)
T PRK12319 6 RILKEARDQGRLTTLDYATLIF----------------D-----DFMEL-----HG---------DRHFR-DDGAVVGGI 49 (256)
T ss_pred HHHHHhccCCCCCHHHHHHHhC----------------c-----hheec-----cC---------CCCCC-CCCcEEEEE
Confidence 4788999999999999998771 1 36676 23 12222 234599999
Q ss_pred EEecCccccCCcEEEEEEecc--------cccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDV--------TFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~--------T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|++||. ++++|++.+...+|..|++++|.+.++|+|+|.|++|++++...|-
T Consensus 50 gri------~Gr~V~via~~~~~~~~d~~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~----- 118 (256)
T PRK12319 50 GYL------AGQPVTVVGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEE----- 118 (256)
T ss_pred EEE------CCEEEEEEEeccCCccccceeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHh-----
Confidence 877 999999999864 4689999999999999999999999999999999999999843210
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc-ccccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~-~sG~iag~~s~a~~~ip 1744 (2267)
.|.... +.+|+. .|++ .||
T Consensus 119 ----------~G~~~~----------------------------------------ia~~~~~~s~~----------~VP 138 (256)
T PRK12319 119 ----------RGQGEA----------------------------------------IARNLMEMSDL----------KVP 138 (256)
T ss_pred ----------ccHHHH----------------------------------------HHHHHHHHhCC----------CCC
Confidence 121000 011111 0111 379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccc-----ccccccCCccccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV-----YSSHMQLGGPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~ev-----y~s~~~lGG~~i~~~nGv~d~~v~ 1815 (2267)
+|++|+|+|.|+|||...++|+++|.+++.+.+.+|+..-..+=++. .....++ .+.-+.+.|++|-+++
T Consensus 139 ~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~-~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 139 IIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASILWKDGSRATEAAELMKI-TAGELLEMGVVDKVIP 213 (256)
T ss_pred EEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCC-CHHHHHHCCCCcEecC
Confidence 99999999999999999999999999999999999987776654322 0111233 4455678999999985
No 111
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.61 E-value=6.1e-15 Score=174.58 Aligned_cols=145 Identities=23% Similarity=0.240 Sum_probs=115.9
Q ss_pred CChHHHhcccccCCCCcccccccCCCceeccc-----------------cccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1860 CDPRAAICGFLDNNGKWIGGIFDKDSFVETLE-----------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1860 yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~-----------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
.++|++|+. |||+|||.|+.. ..+++||+|+|+|+|+||.|+++|++++
T Consensus 6 ltAReRi~~-----------LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~--- 71 (274)
T TIGR03133 6 ANARERARG-----------LLDAGSFRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQ--- 71 (274)
T ss_pred CCHHHHHHH-----------hcCCCcceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCCcc---
Confidence 467888886 899999999921 1258999999999999999999998877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcc-----cCCcEEEEecCCCCCCchhhhhhch--HHHHHHHHH
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR-----EELPLFILANWRGFSGGQRDLFEGI--LQAGSTIVE 1995 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~-----~~lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv~ 1995 (2267)
||++++..++|++|+++.|.+ .++|+|+|.|++|. .++++. +-..++++.
T Consensus 72 ------------------GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGa-----RlqEg~~~L~~~a~i~~ 128 (274)
T TIGR03133 72 ------------------GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGV-----RLQEANAGLIAIAEIMR 128 (274)
T ss_pred ------------------CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCc-----ChhhhHHHHHHHHHHHH
Confidence 899999999999999999987 57899999999993 344443 334567776
Q ss_pred HHhcCC--CCEEEEEccCCc--CCch-hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 1996 NLRTYK--QPVFVYIPMMAE--LRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 1996 al~~~~--vP~i~vI~~~g~--~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
++..++ +|+|++|. |+ |+|| +|.+.. .|+ ++|.+++++++.||+-+
T Consensus 129 ~~~~ls~~vP~Isvv~--Gp~gc~GG~a~~a~l----~D~--vim~~~a~i~~aGP~VI 179 (274)
T TIGR03133 129 AILDARAAVPVIGVIG--GRVGCFGGMGIAAGL----CSY--LIMTEEGRLGLSGPEVI 179 (274)
T ss_pred HHHHHhCCCCEEEEEe--CCCCcchHHHHHHhc----CCE--EEEeCCcEEeccCHHHH
Confidence 655554 99999998 66 4555 443333 477 89999999999999554
No 112
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.60 E-value=1.2e-14 Score=174.53 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=146.9
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
++.+.||+.+.+|.-|+.+.+- . +|.|| +| +|..| ++.+||+|+
T Consensus 59 ~~v~~ar~~~Rp~~~d~i~~l~------------------d---~f~EL-----~g---------d~~~~-dd~aiVtG~ 102 (316)
T TIGR00513 59 QRLQLARHPDRPYTLDYIELIF------------------D---DFFEL-----AG---------DRAYA-DDKAIVGGI 102 (316)
T ss_pred HHHHHHhCCCCCchHHHHHHHh------------------h---hheee-----cc---------ccCCC-CCCceEEEE
Confidence 4789999999999998887551 1 57777 44 33334 355699999
Q ss_pred EEecCccccCCcEEEEEEeccc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T--------~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|++||.. .++|+.++...+|..|++++|.+.++|+|+|.|++||+++...+-.
T Consensus 103 ari------~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~---- 172 (316)
T TIGR00513 103 ARL------DGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEER---- 172 (316)
T ss_pred EEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHH----
Confidence 987 9999999999984 7899999999999999999999999999999999999998432111
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc-ccccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~-~sG~iag~~s~a~~~ip 1744 (2267)
|.. .. +.+|+. .++ ..||
T Consensus 173 -----------G~~---------~a-------------------------------ia~~l~a~s~----------~~VP 191 (316)
T TIGR00513 173 -----------GQS---------EA-------------------------------IARNLREMAR----------LGVP 191 (316)
T ss_pred -----------HHH---------HH-------------------------------HHHHHHHHHc----------CCCC
Confidence 100 00 011111 011 1379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccc---cccCC-ccccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG-GPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s---~~~lG-G~~i~~~nGv~d~~v~ 1815 (2267)
+||+|+|+|.|||||...++|+++|.+++.+.+.+|+.-...+-++.-.. .+.++ +++-....|++|-+++
T Consensus 192 ~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~a~~aae~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 192 VICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASKAPKAAEAMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred EEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccchhhHHHHHHHccCCHHHHHHCCCCeEecc
Confidence 99999999999999999999999999999999999987777665542000 11122 3556678999999986
No 113
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.60 E-value=5.8e-15 Score=176.33 Aligned_cols=146 Identities=23% Similarity=0.267 Sum_probs=118.2
Q ss_pred CCChHHHhcccccCCCCcccccccCCCceeccc--------c---------ccceEEEEEEEECCeEEEEEEEecccccc
Q 000092 1859 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--------G---------WARTVVTGRARLGGIPVGIVAVETQTVMQ 1921 (2267)
Q Consensus 1859 ~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~--------~---------~a~~vVtG~arl~G~pVgViA~e~~~~~~ 1921 (2267)
.-.+|++|+. |||+|||.|+.. . .+++||||+|+|+|+||.|+++|++++
T Consensus 14 ~ltARERi~~-----------LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~-- 80 (301)
T PRK07189 14 EASARERAAA-----------LLDAGSFRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRFM-- 80 (301)
T ss_pred eCCHHHHHHH-----------hcCCCcceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCCcc--
Confidence 3578888886 899999999921 1 247999999999999999999998877
Q ss_pred ccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccC-----CcEEEEecCCCCCCchhhhhhch--HHHHHHHH
Q 000092 1922 VIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREE-----LPLFILANWRGFSGGQRDLFEGI--LQAGSTIV 1994 (2267)
Q Consensus 1922 ~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~-----lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv 1994 (2267)
||++++.+++|++|+++.|.+.+ +|+|+|.|++|. .++++. +..+++++
T Consensus 81 -------------------GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~~~L~~~a~i~ 136 (301)
T PRK07189 81 -------------------GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEANAGLAAIAEIM 136 (301)
T ss_pred -------------------CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchHHHHHHHHHHH
Confidence 99999999999999999999999 999999999993 344443 44557777
Q ss_pred HHHhcCC--CCEEEEEccCCc--CCch-hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 1995 ENLRTYK--QPVFVYIPMMAE--LRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 1995 ~al~~~~--vP~i~vI~~~g~--~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
.++..++ +|+|++|. |. |+|| +|.+.. .|+ ++|.++|++++.||+-+
T Consensus 137 ~~~~~ls~~VP~I~vv~--G~~gc~GG~a~~a~l----~D~--iIm~~~a~iglaGP~VI 188 (301)
T PRK07189 137 RAIVDLRAAVPVIGLIG--GRVGCFGGMGIAAAL----CSY--LIVSEEGRLGLSGPEVI 188 (301)
T ss_pred HHHHHHhCCCCEEEEEc--CCCCCcHHHHHHHhc----CCE--EEEECCcEEeccCHHHH
Confidence 7765554 99999998 65 5555 444332 487 89999999999999544
No 114
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=99.59 E-value=6.4e-15 Score=176.96 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=146.3
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
++.+.||+.+.+|.-|+++.+- . +|.|| +| +|..| ++.+||+|+
T Consensus 59 ~~v~~ar~~~Rp~~~d~I~~l~------------------d---~f~El-----~g---------dr~~~-dd~aiV~G~ 102 (319)
T PRK05724 59 QKVQLARHPQRPYTLDYIELLF------------------T---DFTEL-----HG---------DRAFA-DDKAIVGGL 102 (319)
T ss_pred HhhhcccCCCCCCHHHHHHHHh------------------h---HHHHH-----cC---------CcCCC-CCCceEEEE
Confidence 3678999999999988777651 1 57777 45 34344 345799999
Q ss_pred EEecCccccCCcEEEEEEeccc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T--------~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|+|||.+ +++|++.+...+|..|++++|.+.++|+|+|.|++||+++...+-
T Consensus 103 ari------~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~----- 171 (319)
T PRK05724 103 ARL------NGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEE----- 171 (319)
T ss_pred EEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHh-----
Confidence 987 9999999999994 689999999999999999999999999999999999999843210
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc-ccccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~-~sG~iag~~s~a~~~ip 1744 (2267)
.|.. .. +..|+. .+. ..||
T Consensus 172 ----------~G~~---------~a-------------------------------ia~~l~~~a~----------~~VP 191 (319)
T PRK05724 172 ----------RGQS---------EA-------------------------------IARNLREMAR----------LKVP 191 (319)
T ss_pred ----------ccHH---------HH-------------------------------HHHHHHHHhC----------CCCC
Confidence 1110 00 011111 011 1379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccc-----ccccccCCccccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV-----YSSHMQLGGPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~ev-----y~s~~~lGG~~i~~~nGv~d~~v~ 1815 (2267)
+||+|+|+|.|||||...++|+++|.+++.+.+.+|..--..+-++. .....++ +++-+...|++|-+++
T Consensus 192 ~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~~~~a~~aae~~~i-ta~~l~~~g~iD~II~ 266 (319)
T PRK05724 192 IICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASKAPEAAEAMKI-TAQDLKELGIIDEIIP 266 (319)
T ss_pred EEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcCchhHHHHHHHcCC-CHHHHHHCCCceEecc
Confidence 99999999999999999999999999999999999987766665432 0111333 3455678999999985
No 115
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=99.58 E-value=2.6e-14 Score=174.07 Aligned_cols=195 Identities=20% Similarity=0.157 Sum_probs=147.2
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|.+.||+.+.+|..||+..+- . +|.|| +| +|..| ++.+||+|+
T Consensus 129 q~vq~aRhp~RP~~~d~I~~i~------------------d---df~EL-----~G---------dr~~~-dD~aIVtG~ 172 (431)
T PLN03230 129 QRLSVARHPNRPTFLDHVLNMT------------------D---KWVEL-----HG---------DRAGF-DDPAIVCGI 172 (431)
T ss_pred HHHHHHhCCCCCCHHHHHHHhh------------------h---HHhhh-----cC---------cccCC-CCCCeEEEE
Confidence 4889999999999999997762 1 57787 56 44444 455699999
Q ss_pred EEecCccccCCcEEEEEEeccccc--------CCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVTFK--------AGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T~~--------~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +|++|+|++||.++. .|++.+...+|..|++++|.+.++|+|+|.|++||+++...+-.
T Consensus 173 grI------~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~pG~~AEe~---- 242 (431)
T PLN03230 173 GSM------EGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEEL---- 242 (431)
T ss_pred EEE------CCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHHH----
Confidence 977 999999999998653 59999999999999999999999999999999999998442211
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc-ccccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~-~sG~iag~~s~a~~~ip 1744 (2267)
|. ... +..|+. .+++ .||
T Consensus 243 -----------Gq---------a~a-------------------------------IAr~l~ams~l----------~VP 261 (431)
T PLN03230 243 -----------GQ---------GEA-------------------------------IAFNLREMFGL----------RVP 261 (431)
T ss_pred -----------hH---------HHH-------------------------------HHHHHHHHhcC----------CCC
Confidence 10 000 011111 1111 379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccc---cccCC-ccccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG-GPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s---~~~lG-G~~i~~~nGv~d~~v~ 1815 (2267)
+|++|+|++.|||||...+||+++|.+++.+++.||+.--..+-++.-.. .+.++ +++-+.+.|++|-+++
T Consensus 262 iISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~~~A~eAAealkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 262 IIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAAPKAAEALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred EEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccccchHHHHHHcCCCHHHHHhCCCCeEecc
Confidence 99999999999999999999999999999999999988777665432100 11222 3344568999999985
No 116
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.57 E-value=1.4e-14 Score=154.18 Aligned_cols=124 Identities=13% Similarity=0.247 Sum_probs=86.7
Q ss_pred eEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecc-cceEEEEcCceeecccCCCCCceecCCCceeEEEEccCC
Q 000092 628 SYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEA-AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDG 706 (2267)
Q Consensus 628 ~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~-~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~G 706 (2267)
.|+|++||+.|+|++..+.++....-. .......... ..-.-......-.-....++..|+|||+|+|++|+|++|
T Consensus 4 ~~~itvng~~y~V~vee~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ap~~G~V~~i~V~~G 80 (130)
T PRK06549 4 KFKITIDGKEYLVEMEEIGAPAQAAAP---AQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAVG 80 (130)
T ss_pred eEEEEECCEEEEEEEEEccCccccccc---cCccccCCCcccCCccccccCCCCccCCCCCcEEECCCCEEEEEEEeCCC
Confidence 589999999999999887533100000 0000000000 000000000000000123467899999999999999999
Q ss_pred CEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 707 SHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 707 d~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
|.|++||+|++||+|||+++|.||.+|+|..+ +++|+.|..|++|++|
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 99999999999999999999999999999988 9999999999999987
No 117
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.56 E-value=2.9e-14 Score=194.68 Aligned_cols=310 Identities=21% Similarity=0.227 Sum_probs=209.1
Q ss_pred ccccCCCCCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEE
Q 000092 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87 (2267)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~ 87 (2267)
|.++||+.+|||+|.+ ..+..+.-+-+|....-|.. .+..|++++.++.+-+..
T Consensus 86 ~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~~~~-------------- 139 (864)
T TIGR02068 86 QNLAGMPVGFGRTRET---ATPGVYNVVVEYSHEQVGRY---------AGRLAVDLVRSAIDDGPF-------------- 139 (864)
T ss_pred HHHhCCCcccceEEec---CCCCeEEEEEEehhHHHhHH---------HHHHHHHHHHHHHhcCCC--------------
Confidence 5689999999999763 22222322223333222222 367788888888754321
Q ss_pred eccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEe--------CCCcCCCCCchHHHHHHcCCeE
Q 000092 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWP--------GWGHASEIPELPDTLSTKGIIF 159 (2267)
Q Consensus 88 t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~p--------G~G~~sEn~~la~~l~~~GI~f 159 (2267)
|.+..-.+++...+....++ +...|++.|.+.++....- |||.-.. .+.+ -.+
T Consensus 140 ---~~~~~~~~~~~~~~~~~~g~--------st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~------~~~~--~~t 200 (864)
T TIGR02068 140 ---DLEQALQRLRDLVADASLGP--------STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQK------RIQA--TET 200 (864)
T ss_pred ---CHHHHHHHHHHHHHhccCCC--------cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEE------EEEe--ecC
Confidence 33333445555444444432 2578999999999875442 3332211 1111 112
Q ss_pred eCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 160 iGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
--.+..++..+.||..++++++++|||+|+|.. +.+.+++.++++++|||+||||..
T Consensus 201 ~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~-----------------------~~s~~ea~~~~~~ig~PvVVKP~~ 257 (864)
T TIGR02068 201 DRTSAIAVEIACDKDLTKEILSDAGVPVPEGTV-----------------------VQSAEDAWEAAQDLGYPVVIKPYD 257 (864)
T ss_pred CCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHcCCCEEEEECC
Confidence 236788999999999999999999999999865 678999999999999999999999
Q ss_pred CCCCcCeEE-ECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccc-------------
Q 000092 240 GGGGKGIRK-VHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV------------- 305 (2267)
Q Consensus 240 GgGGkGIr~-V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsv------------- 305 (2267)
|++|+||.+ +++.+++.++++.+... +..++||+|++| +++.+-++. |++++...|....
T Consensus 258 g~~G~GV~l~v~s~~el~~a~~~a~~~--~~~vlVEefI~G-~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi 331 (864)
T TIGR02068 258 GNHGRGVTINILTRDEIESAYEAAVEE--SSGVIVERFITG-RDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELI 331 (864)
T ss_pred CCCccCEEEEeCCHHHHHHHHHHHHhh--CCcEEEEEeccC-CEEEEEEEC---CEEEEEEEecCCceecCccccHHHHH
Confidence 999999998 99999999999988754 368999999987 899886653 4666665554311
Q ss_pred ------ccc---cceEEE---------------------------------------ecCCCCCCHHHHHHHHHHHHHHH
Q 000092 306 ------QRR---HQKIIE---------------------------------------EGPITVAPLETVKKLEQAARRLA 337 (2267)
Q Consensus 306 ------qrr---~qKiie---------------------------------------eaPa~~l~~e~~~eL~~~A~rla 337 (2267)
.|| |.+... .+-+...+.++.++..+.|++++
T Consensus 332 ~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa 411 (864)
T TIGR02068 332 EQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAA 411 (864)
T ss_pred HHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHH
Confidence 011 111110 11122345677788999999999
Q ss_pred HHcCceeeeEEEEEEEc-----cCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHc
Q 000092 338 KCVNYVGAATVEYLYSM-----ETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 338 ~aLGy~Ga~tVEfl~d~-----~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~ 392 (2267)
+++|+. .+.||++... +..+..+||+|+.++-. |..-..-.+.|+....+....
T Consensus 412 ~~~gl~-i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 412 KIIGLD-IAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred HHhCCC-eEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 999985 4449998741 13456899999998854 433223357778877777654
No 118
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.55 E-value=2.7e-14 Score=163.06 Aligned_cols=184 Identities=21% Similarity=0.313 Sum_probs=108.9
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCcCeEEE
Q 000092 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKV 249 (2267)
Q Consensus 171 gDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V 249 (2267)
.||..+.++++++|||+|++.. +.+.+++.++.+++ +||+|+||..|++|+||.++
T Consensus 2 ~dK~~~~~~l~~~gipvP~t~~-----------------------~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i 58 (190)
T PF08443_consen 2 EDKLLTLQLLAKAGIPVPETRV-----------------------TNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLI 58 (190)
T ss_dssp HBHHHHHHHHHHTT-----EEE-----------------------ESSHHHHHHHHHHH--SSEEEE-SB-------EEE
T ss_pred CCHHHHHHHHHHCCcCCCCEEE-----------------------ECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEe
Confidence 6999999999999999999776 67899999999999 89999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEEeccccc--eeeEEEEEcCCCCEEEeccccccc-ccccceEEEecCCCCCCHHHH
Q 000092 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSR--HLEVQLLCDQYGNVAALHSRDCSV-QRRHQKIIEEGPITVAPLETV 326 (2267)
Q Consensus 250 ~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r--hieVqvl~D~~G~vi~l~~Rdcsv-qrr~qKiieeaPa~~l~~e~~ 326 (2267)
++.+++...++..... ..++++|+||+... ++.|-++++ +++....|.-.- .-|+.- -..+. ..+-++-
T Consensus 59 ~~~~~~~~~l~~~~~~--~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r~~~~~d~r~n~-~~g~~--~~~~~l~ 130 (190)
T PF08443_consen 59 NSPDELESLLDAFKRL--ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRRSSPEGDFRTNL-SRGGK--VEPYDLP 130 (190)
T ss_dssp ESHCHHHHHHH-------TTT-EEEE----SS---EEEEEETT---EEEEEEE---------------------EE----
T ss_pred cCHHHHHHHHHHHHhc--cCcceEeccccCCCCcEEEEEEECC---EEEEEEEEecCcccchhhh-ccCce--EEEecCC
Confidence 9999999987765422 46899999998754 788877764 566544442110 111100 00000 0112234
Q ss_pred HHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHH
Q 000092 327 KKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 327 ~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~i 390 (2267)
+++.+.|.++++++|+ ..+.||++-+ ++++||+|+|+.++- ..+|..+|+|+....+..
T Consensus 131 ~e~~~~a~~~~~~lgl-~~~giDi~~~--~~~~~v~EvN~~~~~--~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 131 EEIKELALKAARALGL-DFAGIDILDT--NDGPYVLEVNPNPGF--RGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp HHHHHHHHHHHHHTT--SEEEEEEEEE--TTEEEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CEEEEEEEec--CCCeEEEEecCCchH--hHHHHHHCcCHHHHHHhh
Confidence 6788899999999997 5777996655 678999999998874 457778999999887653
No 119
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.52 E-value=2.8e-14 Score=137.73 Aligned_cols=68 Identities=29% Similarity=0.489 Sum_probs=65.4
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
..|+|||+|+|.+|+|++||+|++||+|+++|+|||+++|+||.+|+|.++ +++|+.|..|++|++|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999988 99999999999999884
No 120
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.52 E-value=6.1e-14 Score=181.78 Aligned_cols=124 Identities=18% Similarity=0.349 Sum_probs=91.9
Q ss_pred eEEEEECCeEEEEEEEEecC---C--ceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEE
Q 000092 628 SYTLRMNESEIEAEIHTLRD---G--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYL 702 (2267)
Q Consensus 628 ~y~v~inG~~~~V~v~~l~d---g--~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~ 702 (2267)
.|.|..+|+.+.|++...++ | .+.+.+||..+.+.+.+........ ........++++|.|||||+|++|+
T Consensus 465 e~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~~----~~~~a~~~~~~~v~apm~G~V~~~~ 540 (596)
T PRK14042 465 EFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKIE----RSSVNNKIGPGDITVAIPGSIIAIH 540 (596)
T ss_pred EEEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeeccccccccccc----ccccCCCCCCCeEecCcceEEEEEE
Confidence 34455555555555543221 1 3456678877766554332111111 1111234567899999999999999
Q ss_pred ccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
|++||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|.+|++|++|+
T Consensus 541 V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 541 VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 999999999999999999999999999999999988 99999999999999996
No 121
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.47 E-value=2.4e-13 Score=177.61 Aligned_cols=122 Identities=17% Similarity=0.348 Sum_probs=98.1
Q ss_pred eeeEeecCeEEEEEEEeecC---ceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeeccc
Q 000092 607 QVSLNIEGSKYRIDMVRRGP---GSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQN 683 (2267)
Q Consensus 607 ~vel~~~g~~Y~v~v~~~g~---~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~ 683 (2267)
.+++.++|++|.+++...|+ .+|.+.+||+..+|.+...+..... ...+
T Consensus 467 ~~~v~i~Gk~~~i~~~~~g~~~~r~~~~~~ng~~~~v~v~d~~~~~~~----------------------------~~~~ 518 (592)
T PRK09282 467 EFKVEVDGEKYEVKIEGVKAEGKRPFYLRVDGMPEEVVVEPLKEIVVG----------------------------GRPR 518 (592)
T ss_pred EEEEEECCEEEEEEEeeccCCCcceEEEEecCceeeeeccCccccccc----------------------------ccCC
Confidence 46666778888888777665 4566667777666666433221100 0234
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
..++..|.|||||+|++|.|++||+|++||+|++||+|||+++|+||.+|+|+++ +++|+.|.+|++|++|++
T Consensus 519 ~~~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 519 ASAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCCceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 5678899999999999999999999999999999999999999999999999888 999999999999999864
No 122
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.44 E-value=2.1e-13 Score=131.16 Aligned_cols=68 Identities=19% Similarity=0.420 Sum_probs=65.7
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
+.|.||+||+|++|.+++||+|++||+|+++|+|||++++.||.+|+|.++ +++|+.|..|++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 468999999999999999999999999999999999999999999999888 99999999999999985
No 123
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.43 E-value=1.8e-13 Score=133.10 Aligned_cols=66 Identities=29% Similarity=0.577 Sum_probs=63.3
Q ss_pred ceecCCCceeEE------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 689 KLVAETPCKLLR------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 689 ~l~APmPG~vv~------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
.+++|++|++.+ |+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|+.|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 589999999877 99999999999999999999999999999999999999 8899999999999986
No 124
>PRK06748 hypothetical protein; Validated
Probab=99.42 E-value=4.2e-13 Score=132.07 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=64.5
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEcc-ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM-KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM-KM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.|+|||||+|++|+|++||.|++||+|++||+| |+.++|.||.+|+|+.+ +++|+.|..|++|++|+.+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 589999999999999999999999999999997 46669999999999988 9999999999999999643
No 125
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.42 E-value=1.1e-12 Score=169.05 Aligned_cols=147 Identities=22% Similarity=0.168 Sum_probs=117.6
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||.|+|+|+||.|+++|++++
T Consensus 29 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~~~~~~~~~~~dgvVtG~G~v~Gr~v~v~a~D~t~~--- 94 (512)
T TIGR01117 29 GKMTARERLAL-----------LFDPGSFVEIDQFVKHRCTNFGMDKKELPAEGVVTGYGTIDGRLVYAFAQDFTVM--- 94 (512)
T ss_pred CCCCHHHHHHH-----------hcCCCcEEEecCccccCCCCccccccCCCCceEEEEEEEECCEEEEEEEECCccc---
Confidence 45788899887 8999999998541 247999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhch--HHHHHHHHHHHh--
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGI--LQAGSTIVENLR-- 1998 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv~al~-- 1998 (2267)
||++++..++|+.|+++.|.+.++|||+|.|+.|. .|++++ +...++++..++
T Consensus 95 ------------------gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGa-----rm~eg~~~l~~~~~~~~~~~~~ 151 (512)
T TIGR01117 95 ------------------GGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGA-----RIQEAVDALKGYGDIFYRNTIA 151 (512)
T ss_pred ------------------ccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCC-----CccccchhhhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999994 333333 223345554333
Q ss_pred cCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccc
Q 000092 1999 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEG 2048 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~peg 2048 (2267)
...+|+|+++. |.+.||.+...+. .|+ ++|.++ +.+++.||.-
T Consensus 152 s~~iP~Isvv~--G~~~GG~a~~~al---~D~--vim~~~~a~i~~aGP~v 195 (512)
T TIGR01117 152 SGVVPQISAIM--GPCAGGAVYSPAL---TDF--IYMVDNTSQMFITGPQV 195 (512)
T ss_pred cCCCcEEEEEe--cCCCcHHHHHHHh---cCc--eEEeccceEEEecChHH
Confidence 34689999999 7777776555442 588 999996 6899999954
No 126
>PRK12458 glutathione synthetase; Provisional
Probab=99.41 E-value=8.1e-12 Score=154.71 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=132.7
Q ss_pred HHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCc
Q 000092 153 STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP 232 (2267)
Q Consensus 153 ~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP 232 (2267)
+..|+.++ +++++++.+.||..+..+++ +++|++.. ..+.+++.++.++.|+|
T Consensus 111 e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v-----------------------~~~~~~~~~~~~~~~~~ 163 (338)
T PRK12458 111 ARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHI-----------------------SRNKEYIREFLEESPGD 163 (338)
T ss_pred HhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEE-----------------------eCCHHHHHHHHHHcCCC
Confidence 34577766 99999999999999987766 67777654 45778888888888765
Q ss_pred -EEEeecCCCCCcCeEEECCHHH--HHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEE------Eeccccc
Q 000092 233 -AMIKASWGGGGKGIRKVHNDDE--VRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVA------ALHSRDC 303 (2267)
Q Consensus 233 -VVIKPs~GgGGkGIr~V~s~eE--L~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi------~l~~Rdc 303 (2267)
+|+||..|.||+||.++++.++ +...++.... ..++++|+|+++..+.++.++.- .|+++ +...|-.
T Consensus 164 pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~---~~~~ivQeyI~~~~~gDiRv~vv-~g~~v~~~g~~~a~~R~~ 239 (338)
T PRK12458 164 KMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG---DGYVIAQEYLPGAEEGDVRILLL-NGEPLERDGHYAAMRRVP 239 (338)
T ss_pred eEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh---CCCEEEEEcccCCCCCCEEEEEE-CCEEEeeccceeEEEEec
Confidence 9999999999999999987664 5555554332 45899999998644444444431 25666 4433311
Q ss_pred ccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHc---CceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhc
Q 000092 304 SVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV---NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAE 380 (2267)
Q Consensus 304 svqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aL---Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtG 380 (2267)
.- ...+.....-......++-+++++.|.+++..+ |+ ..+.||++- .+++|||++-.+..+-.+..+|
T Consensus 240 ~~--~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL-~~~gVDli~------~~l~EIN~~sp~g~~~~~~~~g 310 (338)
T PRK12458 240 AG--GDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGL-FFVGLDIVG------DKLVEVNVFSPGGLTRINKLNK 310 (338)
T ss_pred CC--CCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCC-eEEeEEEEC------CEEEEEeCCCcchHHHHHHHhC
Confidence 00 000000000000111123345666777776665 54 366788862 2589999998877777778899
Q ss_pred CCHHHHHHHHHc
Q 000092 381 INLPAAQVAVGM 392 (2267)
Q Consensus 381 vDL~~~qL~iA~ 392 (2267)
+|+....++...
T Consensus 311 ~d~a~~i~~~i~ 322 (338)
T PRK12458 311 IDFVEDIIEALE 322 (338)
T ss_pred CCHHHHHHHHHH
Confidence 999999988653
No 127
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.37 E-value=8.7e-12 Score=164.74 Aligned_cols=248 Identities=16% Similarity=0.098 Sum_probs=162.8
Q ss_pred EEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEe-------CCCHHHHHHhcCHHHH
Q 000092 104 QFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL-------GPPATSMAALGDKIGS 176 (2267)
Q Consensus 104 e~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fi-------GPs~eam~~lgDK~~~ 176 (2267)
..+..++..+ .-.+...++..|.+.|.--|+. +...|.+.---....++ -.+.-++..|.||..+
T Consensus 408 ~~~~l~g~e~--~~~stQ~Li~~Ai~rG~v~vlD------~~~~~~~L~~g~~~~~v~~~s~ts~tS~ia~~i~~DK~~T 479 (737)
T TIGR01435 408 RAYKLVGFED--MELSTQWKLFDVIQKGKVEILD------EAEQFLRLQKGDHIEYVKNANMTSKDNYVSPLIMENKVVT 479 (737)
T ss_pred cccccccccc--ccHhHHHHHHHHHHCCCEEEeC------CCCCeeEeecCCcceEEecceecCCccHHHHHHhcCHHHH
Confidence 3455555443 2245678888888877322331 11112111000111122 2467789999999999
Q ss_pred HHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCcCeEEECC---H
Q 000092 177 SLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHN---D 252 (2267)
Q Consensus 177 k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s---~ 252 (2267)
|++++++|||||+|.. +++.+++.+....+ ||||||||..|++|+||.++.+ .
T Consensus 480 K~iL~~aGIPVP~g~~-----------------------~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~ 536 (737)
T TIGR01435 480 KKVLAEAGFRVPFGDE-----------------------FSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTL 536 (737)
T ss_pred HHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCH
Confidence 9999999999999765 56777777766666 7999999999999999999876 7
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccc---------cc----------ccc---cc
Q 000092 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDC---------SV----------QRR---HQ 310 (2267)
Q Consensus 253 eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdc---------sv----------qrr---~q 310 (2267)
+++.+++..+... +..++||+|++| +|+.|-|+++ ++++...|.- ++ .+| |.
T Consensus 537 eel~~Al~~A~~~--~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~ 610 (737)
T TIGR01435 537 EDFQEALNIAFSE--DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHR 610 (737)
T ss_pred HHHHHHHHHHHhc--CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCccc
Confidence 8999999887644 457999999987 8999988864 4554433321 11 001 11
Q ss_pred ----eEE---------------E-------------------ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 311 ----KII---------------E-------------------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 311 ----Kii---------------e-------------------eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
||. + ++-+..+++++.+...+.|+++++++|.. .+.||++.
T Consensus 611 ~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~ 689 (737)
T TIGR01435 611 KPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLII 689 (737)
T ss_pred CCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEe
Confidence 110 0 01122345677888999999999999997 88899998
Q ss_pred EccC-------CcEEEeeeCccCcCC-cceehhhhcCCHHHHHHH
Q 000092 353 SMET-------GEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 353 d~~~-------g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~ 389 (2267)
..-+ ..+.|||+|++++-. |..--.-.+-|+....+.
T Consensus 690 ~di~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild 734 (737)
T TIGR01435 690 PDETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIK 734 (737)
T ss_pred cCCCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHH
Confidence 5211 236799999999854 322222245555555554
No 128
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.36 E-value=1.9e-12 Score=167.43 Aligned_cols=147 Identities=23% Similarity=0.221 Sum_probs=117.2
Q ss_pred CChHHHhcccccCCCCcccccccCCCceecccc-------------ccceEEEEEEEECCeEEEEEEEeccccccccCCC
Q 000092 1860 CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG-------------WARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1926 (2267)
Q Consensus 1860 yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~-------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAd 1926 (2267)
..+|+.|+. |||+|||.|+... .+++||||+|+|+|+||.|+++|+++.
T Consensus 8 ~~areRi~~-----------L~D~gSF~E~~~~~~~~~~~~~~~~~p~~gvvtG~G~I~G~~v~v~a~D~t~~------- 69 (493)
T PF01039_consen 8 LTARERIDL-----------LLDPGSFRELGDLAGAARYKFGREKTPGDGVVTGIGKINGRPVVVIAQDFTVL------- 69 (493)
T ss_dssp EEHHHHHHH-----------HSGTTEBEEESTTHHTTHCGGGGGH-TTTTEEEEEEEETTEEEEEEEEETTSG-------
T ss_pred cCHHHHHHH-----------hcCCCCCcCchHHHhccccccccccCCCCcEEEEEEeeCCeeEEEEEecccee-------
Confidence 457778876 8999999999643 357999999999999999999998877
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchH--HHHHHHHHHHhcC--CC
Q 000092 1927 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVENLRTY--KQ 2002 (2267)
Q Consensus 1927 pa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~al~~~--~v 2002 (2267)
||++++..++|+.|+++.|.+.++|+|.|.|+.|. .+ +|++++. ...++++.+++.+ .+
T Consensus 70 --------------gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa-~~--r~~eg~~~l~~~g~i~~~~~~~~~~i 132 (493)
T PF01039_consen 70 --------------GGSVGEVHGEKIARAIELALENGLPLVYLVDSGGA-FL--RMQEGVESLMGMGRIFRAIARLSGGI 132 (493)
T ss_dssp --------------GGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSB-CG--GGGGHHHHHHHHHHHHHHHHHHHTTS
T ss_pred --------------cCCCCcccceeeehHHHHHHHcCCCcEEecccccc-cc--ccchhhhhhhhhHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999996 22 4455443 3455665554432 69
Q ss_pred CEEEEEccCCcCCc-hhHhhhccccCCccceeecccc-cEEEeeCccch
Q 000092 2003 PVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2049 (2267)
Q Consensus 2003 P~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~-A~~gvl~pega 2049 (2267)
|+|+++. |.+.| |||.+..+ |+ +++.++ +.+++.||.-.
T Consensus 133 P~I~vv~--G~~~Gg~A~~~~~~----d~--~i~~~~~a~i~l~GP~vv 173 (493)
T PF01039_consen 133 PQISVVT--GPCTGGGAYLAALS----DF--VIMVKGTARIFLAGPRVV 173 (493)
T ss_dssp -EEEEEE--SEEEGGGGHHHHHS----SE--EEEETTTCEEESSTHHHH
T ss_pred CeEEEEc--cccccchhhccccc----Cc--cccCccceEEEecccccc
Confidence 9999999 55555 77766543 77 888887 99999999543
No 129
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.35 E-value=1.3e-11 Score=165.58 Aligned_cols=249 Identities=16% Similarity=0.096 Sum_probs=164.8
Q ss_pred EEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHH-------cCCeEeCCCHHHHHHhcCHHHH
Q 000092 104 QFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLST-------KGIIFLGPPATSMAALGDKIGS 176 (2267)
Q Consensus 104 e~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~-------~GI~fiGPs~eam~~lgDK~~~ 176 (2267)
..+.+++..+ .-.+...|++.|++.++....-.-+ ..+...... .+...-..+..++..++||..+
T Consensus 420 ~~~~L~g~~~--~~~sT~~li~aA~~rGi~v~~ld~~-----~~~l~l~~g~~~~~v~~~~~t~~~s~~s~~~~~DK~~t 492 (752)
T PRK02471 420 RPYALKGYED--MELSTQILLFDAIQRGIQVEILDEQ-----DQFLKLQKGDHVEYVKNGNMTSKDNYISPLIMENKVVT 492 (752)
T ss_pred CccccCCccc--CChhHHHHHHHHHHCCCeEEEEcCC-----cceehhccCCCeeEEEeccccCCCHHHHHHHhhCHHHH
Confidence 3455555544 2245678999999999887664311 011111100 1111122455578888999999
Q ss_pred HHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhh-hCCcEEEeecCCCCCcCeEEE---CCH
Q 000092 177 SLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV-VGYPAMIKASWGGGGKGIRKV---HND 252 (2267)
Q Consensus 177 k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~-IGyPVVIKPs~GgGGkGIr~V---~s~ 252 (2267)
+.+++++|||+|++.. +.+.+++...+++ .|||+||||..|++|+||.++ ++.
T Consensus 493 k~lL~~~GIpvP~~~~-----------------------~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~ 549 (752)
T PRK02471 493 KKILAEAGFPVPAGDE-----------------------FTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASL 549 (752)
T ss_pred HHHHHHCCcCCCCEEE-----------------------EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCH
Confidence 9999999999999765 5677888777766 489999999999999999986 568
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccc---------c-------c---cc---cc
Q 000092 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS---------V-------Q---RR---HQ 310 (2267)
Q Consensus 253 eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcs---------v-------q---rr---~q 310 (2267)
+++.+++..+... +..++||+|++| +++.|-+++ |+++....|... + . +| |.
T Consensus 550 eel~~A~~~a~~~--~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~ 623 (752)
T PRK02471 550 EDYEKALEIAFRE--DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHR 623 (752)
T ss_pred HHHHHHHHHHHhc--CCcEEEEecccC-CEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccc
Confidence 9999999887643 457999999986 899998773 355555444321 1 0 00 11
Q ss_pred eE---EE------------------------------------ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEE
Q 000092 311 KI---IE------------------------------------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYL 351 (2267)
Q Consensus 311 Ki---ie------------------------------------eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl 351 (2267)
+. |. ++-+..++..+.+...+.|+++++++|+. .+.||++
T Consensus 624 ~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii 702 (752)
T PRK02471 624 TPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLI 702 (752)
T ss_pred ccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEE
Confidence 00 00 01122345677889999999999999987 4449999
Q ss_pred EEccC-----C--cEEEeeeCccCcCC-cceehhhhcCCHHHHHHH
Q 000092 352 YSMET-----G--EYYFLELNPRLQVE-HPVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 352 ~d~~~-----g--~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~ 389 (2267)
...-+ . ++.|||+|++++-. |..--.-...|+....++
T Consensus 703 ~~di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d 748 (752)
T PRK02471 703 IPDLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILD 748 (752)
T ss_pred eCCCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHH
Confidence 86211 2 68899999999853 322111234455555544
No 130
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.34 E-value=1.8e-12 Score=169.01 Aligned_cols=111 Identities=18% Similarity=0.313 Sum_probs=84.8
Q ss_pred cCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEcc
Q 000092 625 GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS 704 (2267)
Q Consensus 625 g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~ 704 (2267)
+...|++.+||+.++|.+...+. ........ . . ... + ........+++.|.|||||+|++|+|+
T Consensus 471 g~~~~~~~vnG~~~~V~v~d~~~---~~~~~~~~--~--~-~~~-------~-~~~~a~~~~~~~v~ap~~G~v~~~~V~ 534 (582)
T TIGR01108 471 ASGSYTVEVEGKAFVVKVSPGGD---VSQITASA--P--A-NTS-------G-GTVAAKAGAGTPVTAPIAGSIVKVKVS 534 (582)
T ss_pred CceEEEEEECCEEEEEEEcCCcc---cccccccc--c--c-ccc-------c-ccccCCCCCCCeEeCCccEEEEEEEeC
Confidence 45679999999999999864321 11100000 0 0 000 0 011123456889999999999999999
Q ss_pred CCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEE
Q 000092 705 DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELI 751 (2267)
Q Consensus 705 ~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~L 751 (2267)
+||+|++||+|++||+||||++|.||.+|+|+.+ +++|+.|+.|++|
T Consensus 535 ~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 535 EGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 9999999999999999999999999999999988 9999999999975
No 131
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.34 E-value=7.8e-12 Score=142.08 Aligned_cols=190 Identities=18% Similarity=0.156 Sum_probs=135.2
Q ss_pred hHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHh
Q 000092 148 LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227 (2267)
Q Consensus 148 la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~ 227 (2267)
+-+..++. ...+|+++++++.|.||+.+...++.+ |++|+++. + .
T Consensus 91 Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e--------------------------------~-~ 135 (307)
T COG1821 91 LTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE--------------------------------W-A 135 (307)
T ss_pred HHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc--------------------------------c-c
Confidence 34555555 667899999999999999999999999 99998653 0 0
Q ss_pred hhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc
Q 000092 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR 307 (2267)
Q Consensus 228 ~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr 307 (2267)
..+--.||||.+|.||.|+....+..++ .++|+||+| .|++|.+.....-.+.++...+..+
T Consensus 136 ~~~~k~ViKp~dgCgge~i~~~~~~pd~---------------~i~qEfIeG-~~lSVSL~~GEkv~pLsvNrQfi~~-- 197 (307)
T COG1821 136 EEPKKYVIKPADGCGGEGILFGRDFPDI---------------EIAQEFIEG-EHLSVSLSVGEKVLPLSVNRQFIIF-- 197 (307)
T ss_pred cCCceEEecccccCCcceeeccCCCcch---------------hhHHHhcCC-cceEEEEecCCccccceechhhhhh--
Confidence 1122479999999999999998887663 377899988 7999994433222222321111111
Q ss_pred ccceE-EEecCCCCCCHHHHHHHHHHHHHHHHHcC-ceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHH
Q 000092 308 RHQKI-IEEGPITVAPLETVKKLEQAARRLAKCVN-YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPA 385 (2267)
Q Consensus 308 r~qKi-ieeaPa~~l~~e~~~eL~~~A~rla~aLG-y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~ 385 (2267)
...++ ...++++ .+.++.+++.+.|++..+.++ ++|...||+.+. +++|++|||||+.-..--...+++-++.+
T Consensus 198 ~~~~~~y~gg~~p-i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~TTp~vg~sr~~~~sv~~ 273 (307)
T COG1821 198 AGSELVYNGGRTP-IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPTTPTVGLSRVTPESVAE 273 (307)
T ss_pred ccceeeeccCcCC-CCcHHHHHHHHHHHHHHHhhccccceeeEEEEec---CCcEEEEecCCCCcceeeeeccccHHHHH
Confidence 01111 1234555 566899999999999999995 899999999997 68999999999975543344556777777
Q ss_pred HHHHHHcCC
Q 000092 386 AQVAVGMGI 394 (2267)
Q Consensus 386 ~qL~iA~G~ 394 (2267)
+.+.-..|.
T Consensus 274 LLl~~~~g~ 282 (307)
T COG1821 274 LLLEGPTGK 282 (307)
T ss_pred HHhcCcccc
Confidence 766655553
No 132
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.32 E-value=4.9e-12 Score=165.16 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=87.8
Q ss_pred cCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEcc
Q 000092 625 GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS 704 (2267)
Q Consensus 625 g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~ 704 (2267)
+...|++.+||+.+.|.|...++ -..+...+....... .........++..|.|||||+|++|+|+
T Consensus 476 g~~~~~~~vnG~~~~V~v~~~~~-~~~~~~~~~~~~~~~-------------~~~~a~~~~~~~~V~Ap~~G~I~~~~V~ 541 (593)
T PRK14040 476 GSETYTVEVEGKAYVVKVSEGGD-ISQITPAAPAAAPAA-------------AAAAAPAAAAGEPVTAPLAGNIFKVIVT 541 (593)
T ss_pred CCeEEEEEECCEEEEEEECCCCc-ccccccccccccccc-------------ccccccCCCCCceEECCccEEEEEEEeC
Confidence 55678999999999999853321 001111221111000 0000112344668999999999999999
Q ss_pred CCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 705 DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 705 ~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
+||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|..|++|++|.
T Consensus 542 ~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 542 EGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999999999999988 99999999999999873
No 133
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=99.29 E-value=5.6e-12 Score=158.78 Aligned_cols=149 Identities=19% Similarity=0.081 Sum_probs=120.1
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccc------------cccceEEEEEEEECCeEEEEEEEeccccccccCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE------------GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPA 1925 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PA 1925 (2267)
....+|+.|+. |+|+|||.|+.. ..++++|||.|+++|++|.|+++|++++
T Consensus 41 GkltaReRv~~-----------LlD~Gsf~El~~~a~~~~~~~~~~~~~dGvVtG~G~i~Gr~~~v~a~D~TV~------ 103 (526)
T COG4799 41 GKLTARERVEL-----------LLDPGSFLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVK------ 103 (526)
T ss_pred CcCcHHHHHHH-----------HcCCCchhhhhhhhhcccccccccCCCCeeEEeeeeeCCeEEEEEEecCcee------
Confidence 45678999997 789999999853 2347999999999999999999998766
Q ss_pred CCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC--CC
Q 000092 1926 DPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK--QP 2003 (2267)
Q Consensus 1926 dpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~--vP 2003 (2267)
||+|++-.++|+.|+++.|.+.++|+|.|.|+.|+..+.. ---+...++++...+.++ +|
T Consensus 104 ---------------gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~---v~~l~g~g~iF~~~a~~Sg~IP 165 (526)
T COG4799 104 ---------------GGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEG---VPSLAGYGRIFYRNARASGVIP 165 (526)
T ss_pred ---------------cccccccccchHHHHHHHHHHcCCCEEEEEcccccccccC---ccccccchHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999665443 222445577777766544 89
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccc
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEG 2048 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~peg 2048 (2267)
+|++|+ |.+..||+|..-. +|+ ++|..+ +.+.+.||.-
T Consensus 166 qIsvv~-G~c~gGgaY~pal----~D~--~imv~~~~~mfltGP~~ 204 (526)
T COG4799 166 QISVVM-GPCAGGGAYSPAL----TDF--VIMVRDQSYMFLTGPPV 204 (526)
T ss_pred EEEEEE-ecCcccccccccc----cce--EEEEcCCccEEeeCHHH
Confidence 999999 5555556665444 477 888887 8999999853
No 134
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.29 E-value=8.7e-11 Score=144.32 Aligned_cols=275 Identities=12% Similarity=0.110 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc-EEEEccCCCCCCCccCHH--HHHHHHHHcCCCEE
Q 000092 59 AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD-QFVEVPGGTNNNNYANVQ--LIVEMAEMTRVDAV 135 (2267)
Q Consensus 59 ~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~AD-e~v~vp~~~~~~~Y~dvd--~Il~iA~~~~vDaV 135 (2267)
...+++.++++.|++++ +..+.|......- -.|. ..+.++.. ...|.... ..+. -...|+|
T Consensus 19 st~~L~~aa~~rG~~v~----------~~~~~~l~~~~~~-~~a~~~~~~~~~~--~~~~~~~~~~~~~~---l~~~D~v 82 (312)
T TIGR01380 19 TTFALMEEAQKRGHELF----------FYEPGDLSVVNGE-VFARARPVRVGPN--KQDWYTLGEKVRLS---LGELDAV 82 (312)
T ss_pred hHHHHHHHHHHcCCEEE----------EEehhheEEECCE-EEEEEEEEEeccC--CcceeecCcccccc---cccCCEE
Confidence 66789999999999987 2444443221100 0111 11333211 11111100 1111 1246999
Q ss_pred EeCCC--cCCC---CCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 136 WPGWG--HASE---IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 136 ~pG~G--~~sE---n~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
++--+ +... ...+.+.++..|+.++ +++++++.+.||..+..++. |+||+..
T Consensus 83 ~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v------------------ 139 (312)
T TIGR01380 83 LMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLV------------------ 139 (312)
T ss_pred EEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEE------------------
Confidence 96532 2111 1245677777898877 88999999999999888763 7888654
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH-HHHHHHHHHHHhhCCCCcEEEEEeccc--cceeeEEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND-DEVRALFKQVQGEVPGSPIFIMKVASQ--SRHLEVQL 287 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~-eEL~~a~~~~~~e~~~~~I~VEeyI~g--~rhieVqv 287 (2267)
..+.+++.++.++.| |+|+||..|+||+|+.++++. .++....+... .....++++|+|++. ..++.|-+
T Consensus 140 -----~~~~~~~~~~~~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~-~~~~~~~~vQ~yI~~~~~~D~Rv~v 212 (312)
T TIGR01380 140 -----TRDKAEIRAFLAEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT-QRGREPVMAQRYLPEIKEGDKRILL 212 (312)
T ss_pred -----eCCHHHHHHHHHHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH-hccCCcEEEEeccccccCCCEEEEE
Confidence 457888899999888 999999999999999999753 33433333322 222358999999974 35777766
Q ss_pred EEcCCCCEEE-eccccccc-ccc-cce-EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 288 LCDQYGNVAA-LHSRDCSV-QRR-HQK-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 288 l~D~~G~vi~-l~~Rdcsv-qrr-~qK-iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
++ |++++ ...|--.- .-| +-. .....|.. ++++. .++...+...++++|+ ..+.||++- .||+|
T Consensus 213 v~---g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~-l~~e~-~~ia~~~~~~~~~~gl-~~agVDiig------~~v~E 280 (312)
T TIGR01380 213 ID---GEPIGAAVARIPAGGEFRGNLAVGGRGEATE-LSERD-REICADVAPELKRRGL-LFVGIDVIG------GYLTE 280 (312)
T ss_pred EC---CeEEEEEEEecCCCCCccccccCCceeeccC-CCHHH-HHHHHHHHHHHHhcCC-cEEEEEEeC------CEEEE
Confidence 64 45554 33331110 001 000 00111222 34332 2333334333455665 456688872 47999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHH
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA 391 (2267)
+|+-=+....-.+.++|+|+....++..
T Consensus 281 vN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 281 VNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred EecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 9986333444455679999999887653
No 135
>PRK07051 hypothetical protein; Validated
Probab=99.28 E-value=7.3e-12 Score=123.81 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=65.4
Q ss_pred CceecCCCceeEE-------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 688 SKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 688 ~~l~APmPG~vv~-------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
..++||+||++++ ++|++||.|++||+++++|+|||+++|+||.+|+|.++ +++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999 99999999999999999999999999999999999888 99999999999999985
No 136
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=99.26 E-value=4.1e-12 Score=147.19 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=138.8
Q ss_pred cccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCC
Q 000092 1505 QYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGL 1584 (2267)
Q Consensus 1505 py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~ 1584 (2267)
+|..+...| +.+.||+.+++|+.||.+.+- . +|.|| +| +|..+.
T Consensus 50 iy~~L~~wq-~~q~ARhp~RP~tldyi~~i~----------------~-----df~eL-----~G---------DR~f~d 93 (317)
T COG0825 50 IYSNLTPWQ-RVQLARHPDRPYTLDYIELLF----------------T-----DFVEL-----HG---------DRAFAD 93 (317)
T ss_pred hhccCCHHH-HHHHhhCCCCCcHHHHHHHHH----------------h-----HHHHh-----cC---------ccccCc
Confidence 566555553 678999999999999999882 1 78888 78 777777
Q ss_pred CceeEEEEEEEecCccccCCcEEEEEEecccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCc
Q 000092 1585 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGV 1656 (2267)
Q Consensus 1585 n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~--------~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~ 1656 (2267)
+.+ +|+++.++ +|++|+||++.-.. ..|+..|.+.+|-.|++++|.+.++|+|.|.|+.||-.|.
T Consensus 94 D~A-ivgglar~------~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~ 166 (317)
T COG0825 94 DPA-IVGGLARF------GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGI 166 (317)
T ss_pred Chh-heeeeeeE------CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCc
Confidence 666 99999987 99999999997665 7777779999999999999999999999999999999984
Q ss_pred hhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccc
Q 000092 1657 AEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAY 1736 (2267)
Q Consensus 1657 ~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~ 1736 (2267)
.-|= .| |-.+| ..||...--
T Consensus 167 ~AEE---------------rG--------------------------------Q~eAI--------A~nL~em~~----- 186 (317)
T COG0825 167 GAEE---------------RG--------------------------------QSEAI--------ARNLREMAR----- 186 (317)
T ss_pred chhh---------------cc--------------------------------cHHHH--------HHHHHHHhC-----
Confidence 4111 11 11111 123332111
Q ss_pred cccccCceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcc
Q 000092 1737 SRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGR 1789 (2267)
Q Consensus 1737 s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~ 1789 (2267)
-.+|+||+|.|...+|||.-...||+|.|.+++.+.+..|.---..+=+
T Consensus 187 ----LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVisPEG~AsILWk 235 (317)
T COG0825 187 ----LKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISPEGCASILWK 235 (317)
T ss_pred ----CCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeecChhhhhhhhhc
Confidence 1589999999999999999999999999999998888887654444433
No 137
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.24 E-value=1.3e-11 Score=136.45 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=65.7
Q ss_pred CCceecCCCceeEE-------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~-------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
...|+|||+|++.+ |+|++||.|++||+|++||+|||+++|.|+.+|+|..+ ++.|+.|+.||+|++|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 35799999999998 89999999999999999999999999999999999988 99999999999999874
No 138
>PRK05246 glutathione synthetase; Provisional
Probab=99.22 E-value=2.5e-10 Score=140.54 Aligned_cols=274 Identities=12% Similarity=0.134 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHH--HHHHHHHHcCCCEEE
Q 000092 59 AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQ--LIVEMAEMTRVDAVW 136 (2267)
Q Consensus 59 ~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd--~Il~iA~~~~vDaV~ 136 (2267)
...++++++++.|++++ +.++.|.......+.--...+.++.. .+.|.... ....+ ...|+|+
T Consensus 20 st~~l~~aa~~~G~~v~----------~~~~~dl~~~~~~i~~~~~~~~~~~~--~~~w~~~~~~~~~~l---~~~D~v~ 84 (316)
T PRK05246 20 STFAMMLEAQRRGHELF----------YYEPDDLSLRGGEVVARARPLTVRDD--KGDWYELGEEQRLPL---ADFDVIL 84 (316)
T ss_pred hHHHHHHHHHHcCCEEE----------EEehhhcEEECCEEEEEEEEEEeccC--CccceeccccccCcc---ccCCEEE
Confidence 45779999999999986 35555554321111000011222221 11221110 00111 1369999
Q ss_pred eCCC--cCCCC---CchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccc
Q 000092 137 PGWG--HASEI---PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVY 211 (2267)
Q Consensus 137 pG~G--~~sEn---~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~ 211 (2267)
+.-+ +..+. ..+.+.++..|+.++ +++++++.+.||..+.++++ ++|++..
T Consensus 85 ~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~------------------- 140 (316)
T PRK05246 85 MRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLV------------------- 140 (316)
T ss_pred EcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEE-------------------
Confidence 6522 11110 124566666788887 88999999999999988765 6777654
Q ss_pred cccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC-HHHHHHHHHHHHhhCCCCcEEEEEecccc--ceeeEEEE
Q 000092 212 RQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN-DDEVRALFKQVQGEVPGSPIFIMKVASQS--RHLEVQLL 288 (2267)
Q Consensus 212 ~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s-~eEL~~a~~~~~~e~~~~~I~VEeyI~g~--rhieVqvl 288 (2267)
..+.+++.++.++.| |+|+||..|+||+||.++.. ..++...++.... ....++++|+|++.. .++.|-++
T Consensus 141 ----~~~~~~~~~~~~~~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-~~~~~~lvQ~~I~~~~~~D~Rv~vv 214 (316)
T PRK05246 141 ----TRDKAEIRAFRAEHG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-HGREPVMAQRYLPEIKEGDKRILLV 214 (316)
T ss_pred ----eCCHHHHHHHHHHCC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-ccCCeEEEEeccccCCCCCEEEEEE
Confidence 567888888999888 99999999999999999954 4444444443332 224589999999763 57777666
Q ss_pred EcCCCCEEE-eccccccc--cccc-ceEEEecCCCCCCHHHHHHHHHHHHHHH---HHcCceeeeEEEEEEEccCCcEEE
Q 000092 289 CDQYGNVAA-LHSRDCSV--QRRH-QKIIEEGPITVAPLETVKKLEQAARRLA---KCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 289 ~D~~G~vi~-l~~Rdcsv--qrr~-qKiieeaPa~~l~~e~~~eL~~~A~rla---~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
+ |++++ ...|--.- -|-+ .......|.. +++ +..+.|.+++ +.+|+ ..+.||++. . |+
T Consensus 215 -~--g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~~-l~~----~~~~ia~~~~~~l~~~gl-~~~GVDli~-----~-~l 279 (316)
T PRK05246 215 -D--GEPVGYALARIPAGGETRGNLAAGGRGEATP-LTE----RDREICAAIGPELKERGL-IFVGIDVIG-----D-YL 279 (316)
T ss_pred -C--CEEhhheeEecCCCCCcccCccCCceEeccC-CCH----HHHHHHHHHHHHHHHhCC-CEEEEEEeC-----C-EE
Confidence 3 56665 44442110 0101 0000111222 333 3445555555 55554 356788872 1 69
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHc
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~ 392 (2267)
+|||..-.+...-.|.+||+|+....++...
T Consensus 280 ~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 280 TEINVTSPTGIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred EEEeCCCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999763444777788999999999887654
No 139
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.21 E-value=2.2e-10 Score=140.24 Aligned_cols=176 Identities=17% Similarity=0.220 Sum_probs=126.8
Q ss_pred cCCeEeCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHH---H
Q 000092 155 KGIIFLGPPATSMAALGDKIGSSLIAQAAN-------VPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAI---A 224 (2267)
Q Consensus 155 ~GI~fiGPs~eam~~lgDK~~~k~laq~aG-------VPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~---~ 224 (2267)
.|+.++ .++++++.|.||..+..++.++| ||+|++.. +.+.+.+. .
T Consensus 91 pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v-----------------------~~~~~~al~~~~ 146 (328)
T PLN02941 91 PDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLV-----------------------VYDDESSIPDAV 146 (328)
T ss_pred CCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEE-----------------------EcCHHHHHHHHH
Confidence 588877 89999999999999999999999 88998765 44554433 3
Q ss_pred HHhhhCCcEEEeecCC---CCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-cceeeEEEEEcCCCCEEEecc
Q 000092 225 SCQVVGYPAMIKASWG---GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-SRHLEVQLLCDQYGNVAALHS 300 (2267)
Q Consensus 225 ~a~~IGyPVVIKPs~G---gGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g-~rhieVqvl~D~~G~vi~l~~ 300 (2267)
..+++|||+|+||..| +.|++|.++.+.+.|... +.|+++||||.. ++-+-|-+++|. + ....
T Consensus 147 ~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l---------~~p~~lQEfVnh~g~d~RVfVvGd~---v-~~~~ 213 (328)
T PLN02941 147 ALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL---------EPPLVLQEFVNHGGVLFKVYVVGDY---V-KCVR 213 (328)
T ss_pred HHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc---------CCcEEEEEecCCCCEEEEEEEECCE---E-EEEE
Confidence 4567999999999999 889999999999888761 358999999954 577888888764 2 2222
Q ss_pred cccccc-cc-c-ceEEEe---------cCC----C--------CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 301 RDCSVQ-RR-H-QKIIEE---------GPI----T--------VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 301 Rdcsvq-rr-~-qKiiee---------aPa----~--------~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
| .|.. -+ . ...... .+. . .......++|++.|.++.+++|. +.+.||++.+.++
T Consensus 214 R-~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~ 291 (328)
T PLN02941 214 R-FSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGT 291 (328)
T ss_pred e-cCCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCC
Confidence 3 2220 00 0 000000 000 0 11112345799999999999997 6778999998533
Q ss_pred -CcEEEeeeCccCc
Q 000092 357 -GEYYFLELNPRLQ 369 (2267)
Q Consensus 357 -g~~yfLEINpRlq 369 (2267)
++++++|||.-++
T Consensus 292 ~~~~~VidVN~fP~ 305 (328)
T PLN02941 292 GDRYYVIDINYFPG 305 (328)
T ss_pred CCceEEEEecCCCc
Confidence 4799999999876
No 140
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.21 E-value=1.9e-11 Score=141.19 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=66.1
Q ss_pred CceecCCCceeEE-------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 688 SKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 688 ~~l~APmPG~vv~-------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
..|+|||+|++++ |+|++||+|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|++
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 4699999999999 89999999999999999999999999999999999988 999999999999999863
No 141
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.14 E-value=8.1e-11 Score=130.16 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCceecCCCceeEE-------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~-------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
...|+|||+|++.+ |+|++||+|++||+|+.||+|||.++|.||.+|+|..+ ++.|+.|+.|++|++|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 45799999999998 89999999999999999999999999999999999988 99999999999999874
No 142
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.11 E-value=1.7e-10 Score=109.08 Aligned_cols=66 Identities=30% Similarity=0.569 Sum_probs=63.3
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
+++||++|+|.+|++++|++|++||+++.+|+|||..+|+||.+|+|..+ +++|+.|.+|++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47899999999999999999999999999999999999999999999988 9999999999999875
No 143
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.09 E-value=1.8e-09 Score=131.51 Aligned_cols=199 Identities=15% Similarity=0.098 Sum_probs=120.1
Q ss_pred CCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCC-cEEEeecC
Q 000092 161 GPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASW 239 (2267)
Q Consensus 161 GPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~ 239 (2267)
-++.+....+.||..+..+++++|||+|++... . ..-.+.+++.++++ ++ |||+||..
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~----~---------------s~~~~~~~l~~~~~--~~~~VVVKPl~ 84 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPELYGV----I---------------HNQAEVKTIHNIVK--DHPDFVIKPAQ 84 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCEEEe----c---------------CchhhHHHHHHHHc--cCCCEEEEECC
Confidence 367778889999999999999999999996540 0 00123344444443 46 69999999
Q ss_pred CCCCcCeEEECCHHH---------------HHHHHHH----HHhhC-CCCcEEEEEecccc-----------ceeeEEEE
Q 000092 240 GGGGKGIRKVHNDDE---------------VRALFKQ----VQGEV-PGSPIFIMKVASQS-----------RHLEVQLL 288 (2267)
Q Consensus 240 GgGGkGIr~V~s~eE---------------L~~a~~~----~~~e~-~~~~I~VEeyI~g~-----------rhieVqvl 288 (2267)
|++|+||.++++.++ +...+.. +.... +...+++|.++... +.+.|-++
T Consensus 85 Gs~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv 164 (317)
T TIGR02291 85 GSGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVF 164 (317)
T ss_pred CCCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEE
Confidence 999999999976533 4443332 21111 11235665554332 34555555
Q ss_pred EcCCCCEEEeccccccc---cccc---ce--EE-------------------EecCC-----CCCCHHHHHHHHHHHHHH
Q 000092 289 CDQYGNVAALHSRDCSV---QRRH---QK--II-------------------EEGPI-----TVAPLETVKKLEQAARRL 336 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdcsv---qrr~---qK--ii-------------------eeaPa-----~~l~~e~~~eL~~~A~rl 336 (2267)
.+ ..++-.-| ++. ..++ +- .. +.-|. ..+..+..+++.+.|.++
T Consensus 165 ~~---~~vaa~~R-~~~~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 165 KG---YPVMAMMR-LPTRASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred CC---EEEEEEEE-ccCccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 43 23333233 111 0010 00 00 00111 112235678999999999
Q ss_pred HHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHH
Q 000092 337 AKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQ 387 (2267)
Q Consensus 337 a~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~q 387 (2267)
++++|+ |...+|+++++ ++++++||+|+.++-+ |......|++-.-..
T Consensus 241 ~~~~g~-~~~GvDii~~~-~~g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~ 288 (317)
T TIGR02291 241 WELTGL-GYMGVDMVLDK-EEGPLVLELNARPGLA-IQIANGAGLLPRLKH 288 (317)
T ss_pred HHhcCC-CeEEEEEEEeC-CCCEEEEEeCCCCCCC-HHHHHHCCCcHHHHH
Confidence 999998 99999999984 5789999999998755 222233444433333
No 144
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.01 E-value=4.5e-10 Score=157.38 Aligned_cols=69 Identities=28% Similarity=0.493 Sum_probs=66.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
...|.|||||+|++|+|++||+|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..||+|+.|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 4579999999999999999999999999999999999999999999999998 99999999999999885
No 145
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=98.93 E-value=1.3e-09 Score=137.74 Aligned_cols=67 Identities=30% Similarity=0.460 Sum_probs=62.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+-.+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 102 ~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~ 169 (463)
T PLN02226 102 SITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSE 169 (463)
T ss_pred CcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCC
Confidence 34589999999999999999999999999999999999999999988 99999999999999997543
No 146
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.91 E-value=2.1e-09 Score=134.09 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=62.1
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++ +++|+.|..|++|++++...
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 579999999999999999999999999999999999999999988 99999999999999998654
No 147
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=98.89 E-value=3.8e-09 Score=102.42 Aligned_cols=60 Identities=20% Similarity=0.384 Sum_probs=57.9
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
+|++.+|++++|++|++||+++.+|+|||.++|+||.+|+|..+ ++.|+.+.+|+.|++|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 78999999999999999999999999999999999999999988 9999999999999874
No 148
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=98.89 E-value=2.4e-09 Score=134.55 Aligned_cols=65 Identities=20% Similarity=0.356 Sum_probs=61.9
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+..+
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 479999999999999999999999999999999999999999988 99999999999999998654
No 149
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=98.83 E-value=1.2e-08 Score=128.91 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=62.5
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
...|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 14 ~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 14 VTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 3469999999999999999999999999999999999999999888 99999999999999998654
No 150
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.83 E-value=6.5e-07 Score=105.90 Aligned_cols=281 Identities=14% Similarity=0.149 Sum_probs=176.5
Q ss_pred hHHHHHHhcCCCCCccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC
Q 000092 34 EVDEFCRSLGGKKPIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT 112 (2267)
Q Consensus 34 ~~~~~~~~~~g~~~~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~ 112 (2267)
.+.++++...- .+|-|+- +...|+.++.-||++|++|+ +++- .-....-.....||+++.+.
T Consensus 6 ~ileil~~Y~~----~~i~Iat~gSHSaL~Il~GAK~EGF~Ti---------~v~~-~gr~~~Y~~f~~a~e~i~v~--- 68 (361)
T COG1759 6 EILEILENYDL----EDITIATIGSHSALQILDGAKEEGFRTI---------AVCQ-RGREKPYEKFPVADEVIIVD--- 68 (361)
T ss_pred HHHHHHHhccc----cceEEEEeecchHHHHhhhHHhcCCcEE---------EEEe-cCccchHHhhchhheEEEec---
Confidence 34456655522 2344443 46899999999999999985 3332 22222223345578888884
Q ss_pred CCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 000092 113 NNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPW 190 (2267)
Q Consensus 113 ~~~~Y~dv--d~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~ 190 (2267)
+|.|+ +.|.+-.++. ++|+.-.|......-.-....+.-++..|+ -..++.-.|...-+.++.++|++.|.-
T Consensus 69 ---~f~dil~~~iqe~L~~~--n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGn-R~lLrwE~~~~~~~~lLekAgi~~P~~ 142 (361)
T COG1759 69 ---KFSDILNEEIQEELREL--NAIFIPHGSFVAYVGYDGIENEFEVPMFGN-RELLRWEEDRKLEYKLLEKAGLRIPKK 142 (361)
T ss_pred ---hhHHHhhHHHHHHHHHc--CeEEecCCceEEEecchhhhhcccCccccc-HhHhhhhcchhhHHHHHHHcCCCCCcc
Confidence 45433 2344444444 444433232222211111222344566665 345666669999999999999999983
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC---
Q 000092 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--- 267 (2267)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--- 267 (2267)
..+++|+ .-|||+|...--||+|-.++.|.+|+.+..+++....-
T Consensus 143 -------------------------~~~PeeI-------dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~ 190 (361)
T COG1759 143 -------------------------YKSPEEI-------DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITE 190 (361)
T ss_pred -------------------------cCChHHc-------CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcch
Confidence 4466664 45999999999999999999999999999988875321
Q ss_pred --CCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccc----------cc-------e--EEEecCCCCCCHHHH
Q 000092 268 --GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR----------HQ-------K--IIEEGPITVAPLETV 326 (2267)
Q Consensus 268 --~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr----------~q-------K--iieeaPa~~l~~e~~ 326 (2267)
-....||+|+-|+ ++-.+.+...--+.+-+.+-|.-.+.. .| + ++...|.. +-+.+.
T Consensus 191 edlkna~IeEYv~G~-~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~v-lRESLL 268 (361)
T COG1759 191 EDLKNARIEEYVVGA-PFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVV-LRESLL 268 (361)
T ss_pred hhhhhceeeEEeecc-ceeeeeeeccccCceeEeeeeheeeccchhhccCCHHHHhhcCCCceEEEECCcchh-hHHHHH
Confidence 1357899999885 565655533211223332222211110 11 1 12233554 556677
Q ss_pred HHHHHHHHHHHHHc------CceeeeEEEEEEEccCCcEEEeeeCccCcCCc
Q 000092 327 KKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2267)
Q Consensus 327 ~eL~~~A~rla~aL------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2267)
.++.+++.++.++. |..|+++.|.++++ +=.+++.|+.+|+.++.
T Consensus 269 ~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~-dl~~vVfevS~Ri~gGT 319 (361)
T COG1759 269 PKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSARIVGGT 319 (361)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccceeeeeeecC-CccEEEEEEeccccCCc
Confidence 77888888877765 78899999999995 67899999999997653
No 151
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=98.81 E-value=1.1e-08 Score=124.03 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=100.6
Q ss_pred CCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhh
Q 000092 1583 GLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKA 1662 (2267)
Q Consensus 1583 g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~ 1662 (2267)
+..+. +|+|..+| +|++|-+++||+.|++|+++...+.|..+.+|+|.+.+||+|.+.+.+| ||+ +.-..
T Consensus 334 ~y~~t-lvtGfarl------nG~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~G-fm~--g~~~e 403 (536)
T KOG0540|consen 334 GYGDT-LVTGFARL------NGRTVGIVGNNPKFAGGVLFSESAVKGARFIELCDQRNIPLIFLQNITG-FMV--GRAAE 403 (536)
T ss_pred ccccc-eeeeeeeE------CCEEEEEeccCchhcccccchhhhhhhHHHHHHHHhcCCcEEEEEccCC-ccc--cchhh
Confidence 33344 78999988 9999999999999999999999999999999999999999999999888 887 43333
Q ss_pred hccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccC
Q 000092 1663 CFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKE 1742 (2267)
Q Consensus 1663 l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ 1742 (2267)
+++++ ..| +-++ +.-|-..
T Consensus 404 ~~gIa-------K~g---------------------------------------------------Aklv---~a~a~ak 422 (536)
T KOG0540|consen 404 AGGIA-------KHG---------------------------------------------------AKLV---YAVACAK 422 (536)
T ss_pred hhchh-------hhh---------------------------------------------------hhhh---hhhhhcc
Confidence 33333 011 0010 1222345
Q ss_pred ceEEEEEcCcccchhhhh----hccCCeEEEecCCcceecch-HH
Q 000092 1743 TFTLTYVTGRTVGIGAYL----ARLGMRCIQRLDQPIILTGF-SA 1782 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl----~~lgd~~I~~~~a~i~ltGp-~a 1782 (2267)
+|.||++||++.| |+|- ..++|++++.+++.|.+.|. +|
T Consensus 423 vpkITiit~~syG-G~y~m~sr~~~gd~~yawP~A~IavmG~~~a 466 (536)
T KOG0540|consen 423 VPKITIITGGSYG-GNYAMCSRGYSGDINYAWPNARIAVMGGKQA 466 (536)
T ss_pred CceEEEEecCccC-CcccccccccCCceeEEcccceeeeccccch
Confidence 8999999999999 6665 66799999999999999987 63
No 152
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.74 E-value=1.3e-07 Score=109.40 Aligned_cols=197 Identities=19% Similarity=0.229 Sum_probs=147.1
Q ss_pred cccccccCCCceeccccccceEEEEEEEE-CCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000092 1876 WIGGIFDKDSFVETLEGWARTVVTGRARL-GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1954 (2267)
Q Consensus 1876 ~~~gl~D~gSF~E~~~~~a~~vVtG~arl-~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ar 1954 (2267)
|+..||-.+. ++. --..++.|.+.. +|+++.||.+. + +|.++-+.+.+.|+
T Consensus 2 ~l~~Lf~~~~--~~~--~~~~v~~g~~~~~~~~~iaVvg~~---------------~---------~~~vGl~ea~~lA~ 53 (234)
T PF06833_consen 2 WLAALFPDGH--GIP--ASVQVLDGEAGGEDGRFIAVVGDA---------------N---------HGEVGLEEAWALAK 53 (234)
T ss_pred hHHHhcCCCC--CcC--cccceEEeeccccCCcEEEEEecC---------------C---------CCcccHHHHHHHHH
Confidence 6666665521 111 135688888888 88999999872 1 58899999999999
Q ss_pred HHHHhc--ccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC---CCEEEEEccCCcCCchhHhhhccccCCc
Q 000092 1955 ALMDFN--REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK---QPVFVYIPMMAELRGGAWVVVDSRINSD 2029 (2267)
Q Consensus 1955 ai~~a~--~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~---vP~i~vI~~~g~~~GGa~vv~~~~~n~d 2029 (2267)
++.+.- ..+.|||.++|++|-..|.++|.-|+-++.|.+..++..++ .|+|..|. |++-+|+|.+.+-. +|
T Consensus 54 ~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~--G~A~SGaFLA~Glq--A~ 129 (234)
T PF06833_consen 54 AVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVY--GKAMSGAFLAHGLQ--AN 129 (234)
T ss_pred HHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEe--cccccHHHHHHHHH--hc
Confidence 998764 47999999999999999999999999999888888877655 79999999 99999999999864 45
Q ss_pred cceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhH
Q 000092 2030 HIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQ 2109 (2267)
Q Consensus 2030 ~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~ 2109 (2267)
. +||.|++.+.||+.+.++.|.-|.-+.++. +. +-.|+|.
T Consensus 130 r--l~AL~ga~i~vM~~~s~ARVTk~~ve~Le~-----------------------------la--------~s~PvfA- 169 (234)
T PF06833_consen 130 R--LIALPGAMIHVMGKPSAARVTKRPVEELEE-----------------------------LA--------KSVPVFA- 169 (234)
T ss_pred c--hhcCCCCeeecCChHHhHHHhhcCHHHHHH-----------------------------Hh--------hcCCCcC-
Confidence 5 899999999999999999886554321111 11 1124332
Q ss_pred HHHHhHhhhCcHHHHHHcCCcccccC---ccchHHHHHHHHHHHHhH
Q 000092 2110 VATKFAELHDTSLRMAAKGVIKEVVD---WDKSRSFFCRRLRRRVAE 2153 (2267)
Q Consensus 2110 ~a~~fadlhdt~~rm~~~G~Id~ii~---~~~~R~~~~~~L~r~l~e 2153 (2267)
| -.......|.|+++++ ....+..+...++..|.+
T Consensus 170 ----~-----gi~ny~~lG~l~~l~~~~~~~~~~~~~~~~v~~~l~~ 207 (234)
T PF06833_consen 170 ----P-----GIENYAKLGALDELWDGDLADQPAEALAAQVQEALAA 207 (234)
T ss_pred ----C-----CHHHHHHhccHHHHhcccccccccHHHHHHHHHHHHh
Confidence 1 2457778899999988 444566666666665544
No 153
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.73 E-value=1.6e-07 Score=118.98 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeec--CCCCC--cCe
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKAS--WGGGG--KGI 246 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs--~GgGG--kGI 246 (2267)
+.+.+|++++++|||||+|.. +++.+++.++++++| ||+++||. .|+.| -||
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~-----------------------~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV 60 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYV-----------------------ATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGV 60 (386)
T ss_pred cHHHHHHHHHHcCCCCCCcee-----------------------eCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceE
Confidence 467889999999999999876 778999999999999 99999998 33322 299
Q ss_pred EEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC
Q 000092 247 RKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY 292 (2267)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~~ 292 (2267)
+++.|.+++.++++++.... ++ ..++||+++++++|+.|.++.|..
T Consensus 61 ~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~ 117 (386)
T TIGR01016 61 KVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRS 117 (386)
T ss_pred EEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCC
Confidence 99999999999998876421 11 369999999978999999999863
No 154
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=98.69 E-value=6.9e-08 Score=122.02 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=61.7
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||.|++||+++++|+|||+++|.||.+|+|+++ +++|+.|..|++|++|+.++
T Consensus 13 ~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~ 78 (403)
T TIGR01347 13 TEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGN 78 (403)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 359999999999999999999999999999999999999999988 99999999999999998653
No 155
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=98.68 E-value=4.5e-08 Score=123.86 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=62.6
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
-|+|++|+|++||+|++||+|++||+.|..++|.||.+|+|.++ +++|+.|..|++|+.|+.++.
T Consensus 16 EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 16 EGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred eEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 68999999999999999999999999999999999999999999 999999999999999998754
No 156
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.67 E-value=3.3e-07 Score=116.36 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCc----Ce
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGK----GI 246 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGk----GI 246 (2267)
+++.+|++++++|||+|+|.. +++.+|+.++++++ ||||++||....||| ||
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~-----------------------~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV 60 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIV-----------------------ATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGV 60 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCee-----------------------eCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccE
Confidence 578899999999999999876 78999999999999 999999998655555 99
Q ss_pred EEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC-CCCEEEec
Q 000092 247 RKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ-YGNVAALH 299 (2267)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~-~G~vi~l~ 299 (2267)
+++.+.+++.++++++.... ++ ..++||+++++++|+.+.+..|. .|.++.++
T Consensus 61 ~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 61 KLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred EEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 99999999999999887542 12 25899999997899999999996 46666543
No 157
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.66 E-value=1.8e-07 Score=110.20 Aligned_cols=172 Identities=14% Similarity=0.126 Sum_probs=121.0
Q ss_pred eEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHH-H-HcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1588 GMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLA-C-AKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1588 gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA-~-~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+||++..++ +|++|.|++|+..+ .||..++.|..+....+ . +.++|+|.|.|+.|++++..+|..-+.+
T Consensus 21 ~vv~G~arl------~G~~V~vIa~~~~~---~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~ 91 (238)
T TIGR03134 21 GVLVGSAEL------AGGKVTVIGVVPDA---EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQ 91 (238)
T ss_pred cEEEEEEEE------CCEEEEEEEECCCC---cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHH
Confidence 699999988 99999999999866 88888999999888885 3 4899999999999999996655532210
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
..+++-.. +..++. ..+|+
T Consensus 92 ---------------------a~A~l~~a----------------------------~a~a~~------------~~vP~ 110 (238)
T TIGR03134 92 ---------------------ALAHLAKA----------------------------LALARL------------AGHPV 110 (238)
T ss_pred ---------------------HHHHHHHH----------------------------HHHhhc------------CCCCE
Confidence 00110000 000111 13799
Q ss_pred EEEEcCcccchhhhhhcc-CCeEEEecCCcceecchHHHHHhhcccccc-------ccccCCccccccccCceEEEecCc
Q 000092 1746 LTYVTGRTVGIGAYLARL-GMRCIQRLDQPIILTGFSALNKLLGREVYS-------SHMQLGGPKIMATNGVVHLTVSDD 1817 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~l-gd~~I~~~~a~i~ltGp~al~~~lG~evy~-------s~~~lGG~~i~~~nGv~d~~v~dd 1817 (2267)
|++|+|.+.|+|++.-.+ +|++++-+++.+..-+|+.--..+-+++-. .+...-+++...+.|.+|.+.+..
T Consensus 111 IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~ 190 (238)
T TIGR03134 111 IGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVA 190 (238)
T ss_pred EEEEeCCccHHHHHHHccCcCeEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCC
Confidence 999999999988777666 999999999999999999887777655410 011123445567899999988633
Q ss_pred HH--HHHHHHHHHh
Q 000092 1818 LE--GISAILKWLS 1829 (2267)
Q Consensus 1818 ~e--~~~~i~~~Ls 1829 (2267)
.. .-+.+...++
T Consensus 191 ~~~~~~~~~~~~~~ 204 (238)
T TIGR03134 191 DADAPAAQLAAVLA 204 (238)
T ss_pred CcccHHHHHHHHHH
Confidence 31 1244544444
No 158
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.60 E-value=1e-06 Score=107.28 Aligned_cols=192 Identities=19% Similarity=0.199 Sum_probs=124.6
Q ss_pred CCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCC
Q 000092 162 PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWG 240 (2267)
Q Consensus 162 Ps~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~G 240 (2267)
++.+....+.||..++.++.++|||+|+... .++.+.+......+.+++.+++... ..++++||+.|
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G 83 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIF------------NVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANG 83 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEE------------eccceEEecccccCHHHHHHHHHhccCCcEEEEeCCC
Confidence 6678889999999999999999999999432 2333333333467889998888774 68999999999
Q ss_pred CCCcCeEEECCHH------HHHHHHHHHHhhCCCCcEEEEEeccccc-----------eeeEEEEEcCCCCEEEe-----
Q 000092 241 GGGKGIRKVHNDD------EVRALFKQVQGEVPGSPIFIMKVASQSR-----------HLEVQLLCDQYGNVAAL----- 298 (2267)
Q Consensus 241 gGGkGIr~V~s~e------EL~~a~~~~~~e~~~~~I~VEeyI~g~r-----------hieVqvl~D~~G~vi~l----- 298 (2267)
+||+||.+++..+ +....+.... ...+..++||++|.... -+.|-.+.+. |.+..+
T Consensus 84 ~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lR 161 (285)
T PF14397_consen 84 SGGKGILVIDRRDGSEINRDISALYAGLE-SLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLR 161 (285)
T ss_pred CCccCEEEEEeecCcccccchhHHHHHHH-hcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEE
Confidence 9999999987665 2222222222 22222789999996532 2233333343 221110
Q ss_pred -------------------cccc---ccc--ccccceEEEecCCCCC-----CHHHHHHHHHHHHHHHHHcCceeeeEEE
Q 000092 299 -------------------HSRD---CSV--QRRHQKIIEEGPITVA-----PLETVKKLEQAARRLAKCVNYVGAATVE 349 (2267)
Q Consensus 299 -------------------~~Rd---csv--qrr~qKiieeaPa~~l-----~~e~~~eL~~~A~rla~aLGy~Ga~tVE 349 (2267)
..-+ +.. ...+.+.++.-|-+.. .-..++++.+.+.++++.+...+....|
T Consensus 162 lg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWD 241 (285)
T PF14397_consen 162 LGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWD 241 (285)
T ss_pred eCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEE
Confidence 0000 000 0111222333343221 2234789999999999999888999999
Q ss_pred EEEEccCCcEEEeeeCccCc
Q 000092 350 YLYSMETGEYYFLELNPRLQ 369 (2267)
Q Consensus 350 fl~d~~~g~~yfLEINpRlq 369 (2267)
+.+++ +| |.+||.|.|.+
T Consensus 242 vait~-~G-p~llE~N~~~~ 259 (285)
T PF14397_consen 242 VAITE-DG-PVLLEGNARWD 259 (285)
T ss_pred EEEcC-CC-cEEEEeeCCCC
Confidence 99993 45 99999999954
No 159
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.57 E-value=8.3e-08 Score=128.06 Aligned_cols=65 Identities=26% Similarity=0.396 Sum_probs=62.0
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|..|++|++|+.++
T Consensus 13 ~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~~ 78 (633)
T PRK11854 13 DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESAD 78 (633)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEeccc
Confidence 478999999999999999999999999999999999999999988 99999999999999998763
No 160
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.57 E-value=8.3e-08 Score=128.07 Aligned_cols=66 Identities=21% Similarity=0.393 Sum_probs=62.5
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
...|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 4589999999999999999999999999999999999999999998 99999999999999997543
No 161
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.48 E-value=2.5e-07 Score=117.63 Aligned_cols=64 Identities=25% Similarity=0.524 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
-|+|++|+|++||.|++||+++++|+|||++++.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 12 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 12 ECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 38999999999999999999999999999999999999999988 99999999999999997443
No 162
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.46 E-value=2.3e-07 Score=121.81 Aligned_cols=65 Identities=28% Similarity=0.443 Sum_probs=61.6
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..|++|+.|+.++
T Consensus 128 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 193 (546)
T TIGR01348 128 EKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAG 193 (546)
T ss_pred ceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCC
Confidence 458999999999999999999999999999999999999999988 99999999999999998654
No 163
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.44 E-value=3e-07 Score=121.55 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=62.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+...|+|++|+|++||.|++||+|++||+|||.++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 146 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 213 (590)
T TIGR02927 146 SVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAG 213 (590)
T ss_pred CcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 34579999999999999999999999999999999999999999988 99999999999999997543
No 164
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.41 E-value=4.5e-07 Score=119.11 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=63.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
++.+|+|++|+|++||.|++||++++||+|||+++|.|+.+|+|+.+ +++|+.|..|++|++|+.++.
T Consensus 10 ~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~~ 78 (546)
T TIGR01348 10 DNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGAG 78 (546)
T ss_pred CCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecccc
Confidence 44789999999999999999999999999999999999999999988 999999999999999986543
No 165
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.35 E-value=6.4e-06 Score=99.32 Aligned_cols=180 Identities=18% Similarity=0.251 Sum_probs=117.3
Q ss_pred HHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCC-C--CCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh
Q 000092 153 STKGIIFLGPPATSMAALGDKIGSSLIAQAANV-P--TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV 229 (2267)
Q Consensus 153 ~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGV-P--tpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I 229 (2267)
++.|+.|+.| ...||+...+.+.+... . .|++.. +++.+++.++.++.
T Consensus 5 ~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~-----------------------~~~~~~l~~~L~~y 55 (262)
T PF14398_consen 5 KQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPETEL-----------------------LTSFEDLREMLNKY 55 (262)
T ss_pred hcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceE-----------------------cCCHHHHHHHHHHC
Confidence 3468999977 35899999999998642 2 333322 66788898888876
Q ss_pred CCcEEEeecCCCCCcCeEEEC----------------------CHHHHHHHHHHHHhhCCCCcEEEEEecc----cccee
Q 000092 230 GYPAMIKASWGGGGKGIRKVH----------------------NDDEVRALFKQVQGEVPGSPIFIMKVAS----QSRHL 283 (2267)
Q Consensus 230 GyPVVIKPs~GgGGkGIr~V~----------------------s~eEL~~a~~~~~~e~~~~~I~VEeyI~----g~rhi 283 (2267)
+ -|+|||..|++|+||.+++ +.+++...+.. ......++||+.|+ +++.+
T Consensus 56 ~-~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~yIiQq~I~l~~~~gr~f 131 (262)
T PF14398_consen 56 K-SVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKE---LLGKRRYIIQQGIPLATYDGRPF 131 (262)
T ss_pred C-EEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHH---hcCCCcEEEeCCccccccCCCeE
Confidence 5 4999999999999997653 23445444443 34456899999995 33555
Q ss_pred eEEEEE--cCCCC--EEEecccccccccccceEEEec-------CC-C-----CCCHHHHHHHHHHHHHHHHHc----Cc
Q 000092 284 EVQLLC--DQYGN--VAALHSRDCSVQRRHQKIIEEG-------PI-T-----VAPLETVKKLEQAARRLAKCV----NY 342 (2267)
Q Consensus 284 eVqvl~--D~~G~--vi~l~~Rdcsvqrr~qKiieea-------Pa-~-----~l~~e~~~eL~~~A~rla~aL----Gy 342 (2267)
.+-++. ++.|. +.....|-. ..+ .++..- |. . .-.....++|.+.|..+++++ |.
T Consensus 132 D~RvlvqK~~~G~W~vtg~~~Rva---~~~-~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~ 207 (262)
T PF14398_consen 132 DFRVLVQKNGSGKWQVTGIVARVA---KPG-SIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGG 207 (262)
T ss_pred EEEEEEEECCCCCEEEEEEEEEEc---CCC-CceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555554 55553 333333321 111 111110 00 0 012335667777777777665 65
Q ss_pred -eeeeEEEEEEEccCCcEEEeeeCccCcC
Q 000092 343 -VGAATVEYLYSMETGEYYFLELNPRLQV 370 (2267)
Q Consensus 343 -~Ga~tVEfl~d~~~g~~yfLEINpRlqg 370 (2267)
-|-..+|+-+| .+|+++|||+|++++-
T Consensus 208 ~~gElGiDl~iD-~~g~iWliEvN~kP~~ 235 (262)
T PF14398_consen 208 HLGELGIDLGID-KNGKIWLIEVNSKPGK 235 (262)
T ss_pred ceeEEEEEEEEc-CCCCEEEEEEeCCCCc
Confidence 57889999999 5899999999999874
No 166
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.33 E-value=7.9e-07 Score=117.27 Aligned_cols=64 Identities=25% Similarity=0.466 Sum_probs=61.0
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.+
T Consensus 131 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 131 TEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred ceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 359999999999999999999999999999999999999999888 9999999999999999754
No 167
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.29 E-value=2.1e-06 Score=81.09 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=60.9
Q ss_pred eecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
-+++-.|++.+|.+..|+.|.+|++++.+|+|||.+++.+|.+|+|... +.+|+.+..|++|++|
T Consensus 9 ~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 9 GESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3478889999999999999999999999999999999999999999877 9999999999999874
No 168
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.19 E-value=2.3e-06 Score=112.90 Aligned_cols=65 Identities=28% Similarity=0.525 Sum_probs=61.3
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||+|++||++++||+|||+++|.||.+|+|..+ +++|+.|..|++|+.|+.++
T Consensus 14 ~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 14 VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 469999999999999999999999999999999999999999988 99999999999999997543
No 169
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.16 E-value=3.5e-06 Score=107.82 Aligned_cols=66 Identities=27% Similarity=0.462 Sum_probs=62.2
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
-..|+|++|+|++||.|++||+++++|+|||.+++.||.+|+|..+ +++|+.|..|++|++|+.++
T Consensus 14 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 14 MTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 4579999999999999999999999999999999999999999888 99999999999999997544
No 170
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.14 E-value=3.4e-06 Score=108.06 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCc-cCCCCEEEEEecC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQA-MQAGELIARLDLD 757 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~-v~~G~~La~l~~~ 757 (2267)
-..|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+. |..|++|++|+.+
T Consensus 11 ~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 11 MTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred cceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence 3568999999999999999999999999999999999999999988 999999 9999999999754
No 171
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.11 E-value=2.1e-06 Score=102.01 Aligned_cols=62 Identities=27% Similarity=0.460 Sum_probs=59.4
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
-|.|-.|+.++||+|++++.+++||+.|...+|.||.+|+|+.+ +++|++|++|+.|+.|++
T Consensus 86 eG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 86 EGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 47777899999999999999999999999999999999999988 999999999999999987
No 172
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.10 E-value=4.7e-06 Score=107.26 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=60.5
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
--|+|.+|+|++||.|++||++++||+|||.+++.||.+|+|.++ +++|+ .|..|++|++|+.+.
T Consensus 15 ~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 15 EEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred ceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 358999999999999999999999999999999999999999988 99995 799999999997543
No 173
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.05 E-value=7e-06 Score=106.56 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=59.1
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEec
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDL 756 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~ 756 (2267)
.-|+|++|+|++||.|++||++++||++|..+++.||.+|+|.++ +++|+ .|..|++|+++..
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 358999999999999999999999999999999999999999988 99996 8999999998853
No 174
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=97.96 E-value=1.1e-05 Score=107.14 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=62.0
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
+...|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+.|..|++|++|+..
T Consensus 13 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 13 SVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 44578999999999999999999999999999999999999999988 9999999999999999753
No 175
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.84 E-value=0.00018 Score=79.99 Aligned_cols=109 Identities=21% Similarity=0.365 Sum_probs=69.7
Q ss_pred eeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCce----------------------------
Q 000092 607 QVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNS---------------------------- 658 (2267)
Q Consensus 607 ~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s---------------------------- 658 (2267)
.+.+++||..|.+++.+.+...|.+++||+.|+|++..+.... ..++..
T Consensus 3 ~~~~~~~g~~~~v~v~~~~~~~~~itvnG~~y~V~vee~~~~~---~~~~~~~~~~~~~~~p~~~~~p~~~~~p~~~~~~ 79 (153)
T PRK05641 3 KVKVIVDGVEYEVEVEELGPGKFRVSFEGKTYEVEAKGLGIDL---SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAP 79 (153)
T ss_pred eEEEEECCEEEEEEEEeecCccEEEEECCEEEEEEEEEccccc---ccccccccccccccCcccccCcccccccCccccC
Confidence 4678999999999999999889999999999999997754211 000100
Q ss_pred -----EEEEeeecccceEEEE-cCc-------eeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 659 -----HVVYAEEEAAGTRLLI-DGR-------TCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 659 -----~~v~~~e~~~~~~v~v-~g~-------t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
..+...-...-..+.+ .|. -+.++...-...|.||..|+|.++++++||.|+.||+|+.|
T Consensus 80 ~~~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 80 ASAGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 0000000000000111 011 11111222235799999999999999999999999999986
No 176
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.83 E-value=0.00028 Score=89.85 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCc-EEEeecCCCCC----cCeE
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGG----KGIR 247 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGG----kGIr 247 (2267)
-+.+|.++.++|||+|++.. +++++|+.+.++++||| +++|+..-.|| -||+
T Consensus 5 E~eak~lL~~yGIpvp~~~~-----------------------~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~ 61 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGAL-----------------------AYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIK 61 (392)
T ss_pred HHHHHHHHHHcCCCCCCceE-----------------------ECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEE
Confidence 35678999999999999876 78999999999999995 59998432323 3689
Q ss_pred EECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC-CCCEEEec
Q 000092 248 KVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ-YGNVAALH 299 (2267)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~-~G~vi~l~ 299 (2267)
+..|++++.++++++.... .+ ..++||+.++..+|+-+.+..|. .|.++.++
T Consensus 62 l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 62 LCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred EECCHHHHHHHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 9999999999999887642 11 35899999998899999999986 46666653
No 177
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=97.79 E-value=6.4e-05 Score=88.45 Aligned_cols=106 Identities=25% Similarity=0.407 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCC-----CCcCe
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-----GGKGI 246 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-----GGkGI 246 (2267)
+-..++.++..+|||+|+|.. +++.+++.++++.+||||++|...-. ---||
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~-----------------------~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV 67 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRL-----------------------VTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGV 67 (222)
T ss_dssp -HHHHHHHHHTTT------EE-----------------------ESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-E
T ss_pred CHHHHHHHHHHcCcCCCCeeE-----------------------eCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcE
Confidence 456789999999999999876 88999999999999999999998643 12267
Q ss_pred EE-ECCHHHHHHHHHHHHhhC----C---CCcEEEEEecc-ccceeeEEEEEcC-CCCEEEecc
Q 000092 247 RK-VHNDDEVRALFKQVQGEV----P---GSPIFIMKVAS-QSRHLEVQLLCDQ-YGNVAALHS 300 (2267)
Q Consensus 247 r~-V~s~eEL~~a~~~~~~e~----~---~~~I~VEeyI~-g~rhieVqvl~D~-~G~vi~l~~ 300 (2267)
+. +.+++++.++|+++.... + ...++||+.++ ++.|+.|-+..|. .|.++.++.
T Consensus 68 ~L~l~~~~~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 68 RLNLNSPEEVREAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp EEEE-SHHHHHHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcC
Confidence 77 899999999999887653 2 25799999998 7799999999986 577776543
No 178
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=97.69 E-value=5.3e-05 Score=94.25 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCC-CccCCCCEEEEEecCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEG-QAMQAGELIARLDLDD 758 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G-~~v~~G~~La~l~~~~ 758 (2267)
-|+|++|..++||.+++||.|+|||+.|-.|++.++.+|.+.+| +.+| ..|..|.+||.|..++
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e 117 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDE 117 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEeccc
Confidence 49999999999999999999999999999999999999999988 9999 8999999999986544
No 179
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.69 E-value=3.8e-05 Score=84.37 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=47.8
Q ss_pred CceecCCCceeEEEEcc-CCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 688 SKLVAETPCKLLRYLVS-DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~-~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
+...+.+.|+|+.+.+. +|++|++||++++||+|||+.+|.||.+|+|..+
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~v 87 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEV 87 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEE
Confidence 45778999999999987 8999999999999999999999999999999887
No 180
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=97.68 E-value=0.00024 Score=82.60 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCc-EEEeecCCCCCc----CeE
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGK----GIR 247 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGk----GIr 247 (2267)
-+.++++++++|||+|++.. +++++|+.++++.+|.| +|+||---.||| ||.
T Consensus 4 EyqaK~ll~~~gi~vp~g~~-----------------------a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk 60 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVV-----------------------ATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVK 60 (202)
T ss_dssp HHHHHHHHHCTT----SEEE-----------------------ESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEE
T ss_pred HHHHHHHHHHcCCCCCCeee-----------------------cCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCcee
Confidence 36789999999999999765 78999999999999985 799997766665 589
Q ss_pred EECCHHHHHHHHHHHHhhCC--------C---CcEEEEEeccccceeeEEEEEcCCCCE
Q 000092 248 KVHNDDEVRALFKQVQGEVP--------G---SPIFIMKVASQSRHLEVQLLCDQYGNV 295 (2267)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~~--------~---~~I~VEeyI~g~rhieVqvl~D~~G~v 295 (2267)
+++|++|+.+..++..+..- | ..++||++++-.+|+=+.+..|.....
T Consensus 61 ~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~ 119 (202)
T PF08442_consen 61 IAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRG 119 (202)
T ss_dssp EESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTE
T ss_pred ecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCc
Confidence 99999999999888764311 1 367999999988999999888875443
No 181
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=97.68 E-value=0.00054 Score=87.52 Aligned_cols=101 Identities=16% Similarity=0.281 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh---CCcEEEeecC--CCCC---
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV---GYPAMIKASW--GGGG--- 243 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I---GyPVVIKPs~--GgGG--- 243 (2267)
.-+.++++++++|||+|++.. +.+++|+.+.++++ ++|+|+|+.- ||=|
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~v-----------------------a~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~ 87 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGAA-----------------------ASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGT 87 (422)
T ss_pred CHHHHHHHHHHcCCCCCCcee-----------------------eCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccc
Confidence 467889999999999999776 78999999999999 6999999994 4433
Q ss_pred ------cCeEEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC--CCEE
Q 000092 244 ------KGIRKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY--GNVA 296 (2267)
Q Consensus 244 ------kGIr~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~~--G~vi 296 (2267)
-||+++++ +++.+++++..... .+ ..++|++.+...+|+-+.+..|.. |.++
T Consensus 88 hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 88 FKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred cccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 33667766 99999999887541 11 247777777777899999999962 4455
No 182
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=97.63 E-value=5.3e-05 Score=81.81 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=47.3
Q ss_pred cccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHH
Q 000092 1876 WIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK 1951 (2267)
Q Consensus 1876 ~~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K 1951 (2267)
++..+|| .|+|+.++-. +++|+|+|+++|+||.||+.+.+ .+..|+...+ +|+..|.+++|
T Consensus 72 yI~~l~~--df~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG------------~~~~e~~~rN-FGm~~PeGYRK 136 (145)
T PF03255_consen 72 YIENLFD--DFIELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKG------------RDTKENIKRN-FGMPHPEGYRK 136 (145)
T ss_dssp HHHHH-E--EEEE----SSS---TTEEEEEEEETTEEEEEEEE---------------SSCCHHHHTG-GG---HHHHHH
T ss_pred HHHHHhC--cCeEecCCccCCcCccceeeeEEECCEEEEEEEEecC------------cCHHHHHHHc-CCCCCcchHHH
Confidence 3344787 5999987643 89999999999999999999865 3444555555 58999999999
Q ss_pred HHHHHHHhc
Q 000092 1952 TAQALMDFN 1960 (2267)
Q Consensus 1952 ~arai~~a~ 1960 (2267)
+.|.++.|+
T Consensus 137 AlRlmk~Ae 145 (145)
T PF03255_consen 137 ALRLMKQAE 145 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999874
No 183
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.58 E-value=0.013 Score=77.58 Aligned_cols=235 Identities=13% Similarity=0.104 Sum_probs=119.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC--Ccce--------ec-chHHHHHh-----hccc----cccccccCCcc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD--QPII--------LT-GFSALNKL-----LGRE----VYSSHMQLGGP 1801 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~--a~i~--------lt-Gp~al~~~-----lG~e----vy~s~~~lGG~ 1801 (2267)
..|+|+.|.|.|+|+|..++-.||++|+.++ +.+. ++ |......+ +|.. ...+.+.+.+.
T Consensus 123 pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~Ae 202 (550)
T PRK08184 123 GLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGK 202 (550)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHH
Confidence 4699999999999999999999999999976 3322 22 11112222 2221 11122333333
Q ss_pred ccccccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccCCC-CCCChHHHhcccccCCCCccccc
Q 000092 1802 KIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE-NSCDPRAAICGFLDNNGKWIGGI 1880 (2267)
Q Consensus 1802 ~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~-~~yD~R~~i~~~~~~~~~~~~gl 1880 (2267)
+ ...-|++|.++++| +..+.+.+|..-+-.+...+. ++.-+.+.|- +..| .+ |+
T Consensus 203 e-A~~~GLVd~vv~~d-~l~~~a~~~A~~ia~~~~~~~--------~~~~~~~~~~~~~~~----------~~-----~~ 257 (550)
T PRK08184 203 R-AVDWRLVDEVVKPS-KFDAKVAERAAELAAASDRPA--------DAKGVALTPLERTID----------AD-----GL 257 (550)
T ss_pred H-HHHcCCccEeeCHH-HHHHHHHHHHHHHHhCCCCCC--------CCCcccccccccccc----------CC-----ce
Confidence 3 34689999999754 444445444332211111111 1222333332 1111 11 12
Q ss_pred ccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhc
Q 000092 1881 FDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFN 1960 (2267)
Q Consensus 1881 ~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~ 1960 (2267)
..+. +..-. ...|. |+.|..+.- +..|+-+..-++......|.+.-......+++.+.
T Consensus 258 ~~~~------------~~v~~-~~~~~-va~itlnrP--------~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~ 315 (550)
T PRK08184 258 RYRH------------VDVEI-DRAAR-TATITVKAP--------TAAQPADIAGIVAAGAAWWPLQMARELDDAILHLR 315 (550)
T ss_pred eeEE------------EEEEE-EccCC-EEEEEEeCc--------ccccccccccccccccccCCHHHHHHHHHHHHHHH
Confidence 2211 11111 12232 444443210 00010000001111125788999999999999886
Q ss_pred c--cCCcEEEEecCC--CCCCchh--hhh-------hchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h-hHhhhcc
Q 000092 1961 R--EELPLFILANWR--GFSGGQR--DLF-------EGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G-AWVVVDS 2024 (2267)
Q Consensus 1961 ~--~~lPLv~l~d~~--Gf~~G~~--~e~-------~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G-a~vv~~~ 2024 (2267)
. ..+-.|+|.-.+ .|..|.. ... .........++..+..+.+|+|+.|-+ |.+.| | .-+++++
T Consensus 316 ~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~-G~a~GgG~~eLalac 393 (550)
T PRK08184 316 TNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP-GSCFAGTLAELALAA 393 (550)
T ss_pred hcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC-CceehhHHHHHHHHC
Confidence 3 567778887654 3776654 110 112233445677888999999999932 55555 4 4444443
No 184
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=97.56 E-value=0.0007 Score=77.98 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEcc--CCcCCch
Q 000092 1941 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM--MAELRGG 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~--~g~~~GG 2017 (2267)
.|.+.+..+..+.+.++.+...+ -+|++..|+|| |....+-.+.+++..++.|+|++|.| |-.+.||
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpG----------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG 76 (187)
T cd07020 7 NGAITPATADYLERAIDQAEEGGADALIIELDTPG----------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAG 76 (187)
T ss_pred eeEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCC----------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHH
Confidence 36777888899999999887766 44677779999 44555667788888899999999976 4445557
Q ss_pred hHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|+++++ |. ++|.|+|++|..+|-
T Consensus 77 ~~iala~----D~--iva~p~a~~g~~~~~ 100 (187)
T cd07020 77 TYILLAA----HI--AAMAPGTNIGAAHPV 100 (187)
T ss_pred HHHHHhC----Cc--eeECCCCcEEecccc
Confidence 7777765 76 899999999998875
No 185
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.55 E-value=0.01 Score=78.49 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=67.0
Q ss_pred cccccCCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCC-C-CCCchhh--hh-------hchHHHHHHHHHHHhcCC
Q 000092 1935 RVVPQAGQVWFPDSATKTAQALMDFNR--EELPLFILANWR-G-FSGGQRD--LF-------EGILQAGSTIVENLRTYK 2001 (2267)
Q Consensus 1935 ~~~~~~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~-G-f~~G~~~--e~-------~gilk~ga~iv~al~~~~ 2001 (2267)
.++.|..-.|.++-......++..+.+ ..+-+|+|.-.+ . |+.|..- +. ...+.+..+++..+..+.
T Consensus 286 ~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (546)
T TIGR03222 286 AIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSS 365 (546)
T ss_pred cccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCC
Confidence 345555678999999999999998863 677778776643 2 6665432 10 112223345778899999
Q ss_pred CCEEEEE-ccCCcCCchh--HhhhccccCCccceeec-------ccccEEEee
Q 000092 2002 QPVFVYI-PMMAELRGGA--WVVVDSRINSDHIEMYA-------DRTAKGNVL 2044 (2267)
Q Consensus 2002 vP~i~vI-~~~g~~~GGa--~vv~~~~~n~d~~~~~A-------~p~A~~gvl 2044 (2267)
+|+|+.| - |.+.||+ -.+++ +|+ +|| .++++++.-
T Consensus 366 kpviAav~~--G~a~GgG~~eLala----cD~--~ia~~~~~~~~~~a~f~~~ 410 (546)
T TIGR03222 366 RSLFALIEP--GSCFAGTLAELAFA----ADR--SYMLAFPDNNDPEPAITLS 410 (546)
T ss_pred CCEEEEECC--CeEeHHHHHHHHHh----Cce--eeecCCCCCCCCCCEEeCC
Confidence 9999999 7 5556655 33444 366 677 666766553
No 186
>PLN02235 ATP citrate (pro-S)-lyase
Probab=97.44 E-value=0.0017 Score=82.16 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHHc-----CCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhh---hCCc-EEEeecCCCCCc
Q 000092 174 IGSSLIAQAA-----NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV---VGYP-AMIKASWGGGGK 244 (2267)
Q Consensus 174 ~~~k~laq~a-----GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~---IGyP-VVIKPs~GgGGk 244 (2267)
+.+|+++.++ |||+|.... ++++.+|+.+++++ +|.| +||||---.|||
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~v----------------------~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgR 66 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRSA----------------------QVTESTDFNELANKEPWLSSTKLVVKPDMLFGKR 66 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCee----------------------ccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCC
Confidence 4567888887 999998654 24899999999988 8875 599998877776
Q ss_pred C----eEEECCHHHHHHHHHHHHhhC------CC--CcEEEEEeccccceeeEEEEEcCCCCEE
Q 000092 245 G----IRKVHNDDEVRALFKQVQGEV------PG--SPIFIMKVASQSRHLEVQLLCDQYGNVA 296 (2267)
Q Consensus 245 G----Ir~V~s~eEL~~a~~~~~~e~------~~--~~I~VEeyI~g~rhieVqvl~D~~G~vi 296 (2267)
| |.+++|++|+.++.++..... .| ..++||++++-.+|+=+.++.|.....+
T Consensus 67 GKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~i 130 (423)
T PLN02235 67 GKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSI 130 (423)
T ss_pred cccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEE
Confidence 5 899999999999999877543 11 2579999998889999999988876653
No 187
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=97.39 E-value=0.0026 Score=72.33 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=72.4
Q ss_pred CccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEc-cCCcCCc-hh
Q 000092 1942 QVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP-MMAELRG-GA 2018 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~-~~g~~~G-Ga 2018 (2267)
|.+.+..+.-..|.++.|.+.+ -+|++..|||| |.+..+-.|.+++...++|+++++. +||.+.+ |+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPG----------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG----------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCC----------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHH
Confidence 6788888888999999987754 57999999999 5566677889999999999999995 4444444 56
Q ss_pred HhhhccccCCccceeecccccEEEeeCccc
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
|++++. |. .+|.|++++|..+|-+
T Consensus 78 ~I~~a~----~~--i~m~p~s~iG~~~pi~ 101 (172)
T cd07015 78 YIALGS----HL--IAMAPGTSIGACRPIL 101 (172)
T ss_pred HHHHhc----Cc--eEECCCCEEEEccccc
Confidence 666654 55 8999999999999953
No 188
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.37 E-value=0.00026 Score=72.94 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=45.0
Q ss_pred eecCCCceeEEEE-ccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCC
Q 000092 690 LVAETPCKLLRYL-VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAE 741 (2267)
Q Consensus 690 l~APmPG~vv~~~-V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~ 741 (2267)
....+.|+|+.+. +++|++|++||++++||+||+..+|.||.+|+|..+ .+.
T Consensus 23 ~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l 76 (96)
T cd06848 23 YAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEAL 76 (96)
T ss_pred HHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhh
Confidence 4567799999955 455999999999999999999999999999999877 443
No 189
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.36 E-value=0.00037 Score=86.88 Aligned_cols=34 Identities=6% Similarity=0.129 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|.||.+|+|.+++|++||+|++||+|++|+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 3458999999999999999999999999999975
No 190
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.32 E-value=0.00067 Score=73.38 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=58.4
Q ss_pred ceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCCC
Q 000092 689 KLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDDP 759 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v~---~G~-~La~l~~~~~ 759 (2267)
.......|+|+.+.. +.|++|++||+++.||+||...+|.||.+|+|..+ ....+.|+ .|+ -|++|.+.++
T Consensus 30 ~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~ 109 (127)
T PRK01202 30 DHAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDE 109 (127)
T ss_pred HHHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCH
Confidence 355678899988764 56999999999999999999999999999999877 34456666 565 8999987764
No 191
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.30 E-value=0.00059 Score=87.62 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=63.1
Q ss_pred CCceecCCCceeEEEE-ccCCCEEcCCCcEEEEEc-------------c-------------------------------
Q 000092 687 PSKLVAETPCKLLRYL-VSDGSHIDADTPYAEVEV-------------M------------------------------- 721 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~-V~~Gd~V~~G~~l~~iEa-------------M------------------------------- 721 (2267)
...|.|+.+|.|.+++ +++||+|++||+|++|++ .
T Consensus 123 ~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~ 202 (409)
T PRK09783 123 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 202 (409)
T ss_pred eEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4579999999999998 999999999999999982 0
Q ss_pred ----ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 722 ----KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 722 ----KM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
.-...|+||.+|+|... +.+|+.|.+|++|++|...+.
T Consensus 203 ~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 203 TRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred cCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 01357999999999988 999999999999999975543
No 192
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.26 E-value=0.00042 Score=72.97 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=41.6
Q ss_pred cCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 692 APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
.-+-|+|+.+.+ ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 26 q~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~v 73 (110)
T TIGR03077 26 QENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEV 73 (110)
T ss_pred HHhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence 445677877766 56999999999999999999999999999999887
No 193
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=97.25 E-value=0.0021 Score=73.45 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=73.6
Q ss_pred CCccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhH
Q 000092 1941 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAW 2019 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~ 2019 (2267)
.|.+.+..+.-..|+++.|.+.+ -.|++..|+|| |.+..+-.|...+..+++|++++|. +....+|+|
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspG----------G~v~~~~~I~~~l~~~~~pvva~V~-g~AaSaG~~ 75 (178)
T cd07021 7 EGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPG----------GRVDSALEIVDLILNSPIPTIAYVN-DRAASAGAL 75 (178)
T ss_pred eeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----------CCHHHHHHHHHHHHhCCCCEEEEEC-CchHHHHHH
Confidence 37888888999999999998775 46888899999 5666777889999999999999997 333444777
Q ss_pred hhhccccCCccceeecccccEEEeeCcc
Q 000092 2020 VVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2020 vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+++++ |+ ++|.|++.+|..+|=
T Consensus 76 ia~a~----d~--i~m~p~a~iG~~~~v 97 (178)
T cd07021 76 IALAA----DE--IYMAPGATIGAAEPI 97 (178)
T ss_pred HHHhC----Ce--EEECCCCeEecCeeE
Confidence 77764 66 899999999998884
No 194
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.23 E-value=0.00053 Score=86.17 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=31.7
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|.++++|.|.+++|++||+|++||+|+.|+.
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 4568999999999999999999999999999986
No 195
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.21 E-value=0.0024 Score=79.01 Aligned_cols=102 Identities=17% Similarity=0.305 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecCCCCCc----CeEE
Q 000092 174 IGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGK----GIRK 248 (2267)
Q Consensus 174 ~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGk----GIr~ 248 (2267)
+.+|+++.++|||+|+... +.+++++.++++++| .|+|+|+---.||| ||++
T Consensus 6 YqaKelf~~~GiPvp~g~v-----------------------~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~ 62 (387)
T COG0045 6 YQAKELFAKYGIPVPPGYV-----------------------ATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKL 62 (387)
T ss_pred HHHHHHHHHcCCCCCCcee-----------------------eeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEE
Confidence 5788999999999999655 789999999999998 89999997654444 6999
Q ss_pred ECCHHHHHHHHHHHHh----hCC-C---CcEEEEEecc-ccceeeEEEEEcCCCCEEEe
Q 000092 249 VHNDDEVRALFKQVQG----EVP-G---SPIFIMKVAS-QSRHLEVQLLCDQYGNVAAL 298 (2267)
Q Consensus 249 V~s~eEL~~a~~~~~~----e~~-~---~~I~VEeyI~-g~rhieVqvl~D~~G~vi~l 298 (2267)
+.|.+|..++.+.... ... + ..++||+.++ -.+|+=+.++.|.....+.+
T Consensus 63 ~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 63 AKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred eCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 9999999999998876 222 2 3689999998 43499999888876655443
No 196
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.19 E-value=0.0017 Score=76.91 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCCCccccCC
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAE 766 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~~~~~v~~~~ 766 (2267)
...|+||.+|.+-. .++-||.|+|||+|+.|+. .+|+||.+|+|.-+++.|..|.+|--|+.|+|-.. ++.
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGlirdG~~V~~G~Ki~dIDPR~~----~~~ 234 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLIHEGLTVTEGLKIGDVDPRGE----KAD 234 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEecCCCCcCCCCEEEEECCCCC----ccc
Confidence 45799999996655 9999999999999999985 89999999999999999999999999999977642 222
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 000092 767 PFYGSFPILGPPTAISGKVHQRCAASLNAA 796 (2267)
Q Consensus 767 ~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l 796 (2267)
.|+ .+.|.+......++.+
T Consensus 235 ~~~-----------isdkar~Iag~VLeAi 253 (256)
T TIGR03309 235 CTT-----------ISDKARAIGGGVLEAI 253 (256)
T ss_pred ccc-----------cCHHHHHHHHHHHHHH
Confidence 332 4566666655544443
No 197
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=97.18 E-value=0.00075 Score=76.61 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH-HHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND-DEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 216 V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~-eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
..+.+++.++.++.+. +|+||..|.||+||.++... ..+...++.+.... ..++++|+|++.-+
T Consensus 18 s~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~-~~~~mvQ~flp~i~ 82 (173)
T PF02955_consen 18 SRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNG-ERPVMVQPFLPEIK 82 (173)
T ss_dssp ES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTT-TS-EEEEE--GGGG
T ss_pred ECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcC-CccEEEEecccccc
Confidence 4578999999999998 99999999999999999874 45666555554332 35899999997644
No 198
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.17 E-value=0.00093 Score=82.42 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=62.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccc--------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2267)
...|.||.+|+|.+++|++||+|++||+|+.++.=-
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~ 105 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLD 105 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 356999999999999999999999999999997410
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 723 ---------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
-.+.|+||.+|+|..+ +++|+.+.+|++|++|...+
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 106 DAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 0246999999999988 99999999999999987544
No 199
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=97.14 E-value=0.0011 Score=71.87 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=60.6
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|++.||+.+.+|..||++.+- . +|.|| +| +|..|.+.+ ||+|+
T Consensus 56 ~~V~~aRhp~Rp~~~dyI~~l~----------------~-----df~El-----hG---------DR~~~dD~A-ivgG~ 99 (145)
T PF03255_consen 56 QRVQLARHPDRPTALDYIENLF----------------D-----DFIEL-----HG---------DRLFGDDPA-IVGGI 99 (145)
T ss_dssp HHHHHHTBTTS--HHHHHHHH-----------------E-----EEEE------------------SSS---TT-EEEEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHh----------------C-----cCeEe-----cC---------CccCCcCcc-ceeee
Confidence 3789999999999999999881 2 79998 88 888888777 99999
Q ss_pred EEecCccccCCcEEEEEEecc--------cccCCCcchHHHHHHHHHHHHHH
Q 000092 1594 MEMFTPEFPSGRTILIVANDV--------TFKAGSFGPREDAFFLAVTDLAC 1637 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~--------T~~~GS~g~~~~~k~~ra~elA~ 1637 (2267)
+++ +|++|+||+++= -...|+..|.+.+|-.|++++|.
T Consensus 100 a~~------~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 100 ARF------DGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp EEE------TTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHHHHHHHH
T ss_pred EEE------CCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHHHHHhcC
Confidence 987 999999999954 67899999999999999999984
No 200
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.11 E-value=0.0076 Score=72.13 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=106.3
Q ss_pred HHHHhcCHHHHHHHHHHcC--CCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCC
Q 000092 166 SMAALGDKIGSSLIAQAAN--VPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGG 243 (2267)
Q Consensus 166 am~~lgDK~~~k~laq~aG--VPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGG 243 (2267)
.+..|.||...|...++.+ ...||..+ ..++++++.- ..+.-++||||..|+|+
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll~----------------------v~~~~~~i~~--~~Lp~~fViK~nhgsg~ 69 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLLG----------------------VYDNPDDIDF--DSLPDKFVIKPNHGSGS 69 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECceee----------------------cCCChhhhhh--hcCCCCEEEEEecCCCc
Confidence 3567899999999999986 34555443 1334444422 34556899999999999
Q ss_pred cCeEEECCHHHHHHHHHHHH---h--------hCC----CCcEEEEEeccccc-----eeeEEEEE----------cCCC
Q 000092 244 KGIRKVHNDDEVRALFKQVQ---G--------EVP----GSPIFIMKVASQSR-----HLEVQLLC----------DQYG 293 (2267)
Q Consensus 244 kGIr~V~s~eEL~~a~~~~~---~--------e~~----~~~I~VEeyI~g~r-----hieVqvl~----------D~~G 293 (2267)
.+|....+.-+...+...+. . |.. ...|++|+++.... .+-+-++. |..+
T Consensus 70 ~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~ 149 (239)
T PF14305_consen 70 NIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFG 149 (239)
T ss_pred EEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCC
Confidence 88887665444333332221 1 110 24799999996532 23333332 1111
Q ss_pred -CEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 294 -NVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 294 -~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
....++.+|.....-..+. . .+.....|+..++|.+.|.+|++.+.| +.|||... ++++||=|+-..+++.
T Consensus 150 ~~~~~~yd~dw~~l~~~~~~-~-~~~~~~kP~~l~emi~iA~~Ls~~f~f---vRVDlY~~--~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 150 NHKRNFYDRDWNRLPFRSDY-P-PDEDIPKPKNLEEMIEIAEKLSKGFPF---VRVDLYNV--DGKIYFGELTFTPGAG 221 (239)
T ss_pred CeEEEEECcccCCCccccCC-C-CCCCCCCChhHHHHHHHHHHHccCCCE---EEEEEEEe--CCcEEEEeeecCCCCc
Confidence 1122222221111000000 0 222334577889999999999999776 59999887 8899999999988765
No 201
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.09 E-value=0.00096 Score=82.72 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=60.6
Q ss_pred eecCCCceeEEEEccCCCEEcCCCcEEEEEccc-----------------------------------------------
Q 000092 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK----------------------------------------------- 722 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK----------------------------------------------- 722 (2267)
|.++.+|+|.++.|++||+|++||+|+.|+.=.
T Consensus 50 i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~ 129 (310)
T PRK10559 50 IAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANN 129 (310)
T ss_pred EccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 888999999999999999999999999998610
Q ss_pred -----------------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 723 -----------------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 723 -----------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
=...|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 130 ~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 130 VLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCC
Confidence 0257999999999988 99999999999999886544
No 202
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=97.02 E-value=0.00058 Score=81.40 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=59.1
Q ss_pred eeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 697 KLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 697 ~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+|.+|.|++||.|+.=|+++++.+.|...+|++-.+|+|+++ .++++....|++|..++.++
T Consensus 80 ~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~ 142 (474)
T KOG0558|consen 80 TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED 142 (474)
T ss_pred eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence 588999999999999999999999999999999999999999 99999999999999998644
No 203
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.98 E-value=0.0014 Score=81.86 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
..|.||++|.|.+++|++||.|++||+|+.|+.
T Consensus 44 i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 44 VNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 358999999999999999999999999999974
No 204
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.96 E-value=0.00078 Score=61.22 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=32.2
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccccc
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMC 724 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~ 724 (2267)
..|.||++|+|.+++|++||+|++||+|++|+.-...
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 3588999999999999999999999999999875443
No 205
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=96.92 E-value=0.0027 Score=78.01 Aligned_cols=178 Identities=14% Similarity=0.253 Sum_probs=101.8
Q ss_pred CCeEeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhh
Q 000092 156 GIIFLGPPATSMAALGDKIGSSLIAQAA-------NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV 228 (2267)
Q Consensus 156 GI~fiGPs~eam~~lgDK~~~k~laq~a-------GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~ 228 (2267)
.+.++ -++++++.+.|...|.+++++. +|.+|++.. |.. . ..+..+.. ..+.
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~-------------i~~-----~-~~~~~~~l-~~ag 136 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVV-------------INS-----D-AESLPELL-KEAG 136 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEE-------------ESS-----S-HCCHHHHH-HCTT
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEE-------------EcC-----C-HHHHHHHH-HHCC
Confidence 56565 6789999999999999999886 344444322 110 0 12222221 1346
Q ss_pred hCCcEEEeecCCCC---CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc-ceeeEEEEEcCCCCEEEecccccc
Q 000092 229 VGYPAMIKASWGGG---GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS-RHLEVQLLCDQYGNVAALHSRDCS 304 (2267)
Q Consensus 229 IGyPVVIKPs~GgG---GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~-rhieVqvl~D~~G~vi~l~~Rdcs 304 (2267)
+.||+|+||....| +..|.++.+.+.|.+. ..|+++|+|+..+ .-+-|-+++|. +.+..|...
T Consensus 137 L~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L---------~~P~VlQeFVNHggvLfKVyVvGd~----v~~v~R~SL 203 (307)
T PF05770_consen 137 LKFPLICKPLVACGSADSHKMAIVFNEEGLKDL---------KPPCVLQEFVNHGGVLFKVYVVGDK----VFVVKRPSL 203 (307)
T ss_dssp S-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-----------SSEEEEE----TTEEEEEEEETTE----EEEEEEE--
T ss_pred CcccEEeeehhhcCCccceEEEEEECHHHHhhc---------CCCEEEEEeecCCCEEEEEEEecCE----EEEEECCCC
Confidence 88999999988654 5678999999998753 3599999999643 45666666553 222222110
Q ss_pred ----c---ccc-----cceEE-----------EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC-CcEE
Q 000092 305 ----V---QRR-----HQKII-----------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET-GEYY 360 (2267)
Q Consensus 305 ----v---qrr-----~qKii-----------eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~-g~~y 360 (2267)
. .+. .+.+- ...+.. ....-.+.+.+.|..+-+++|+ ..+++|++.+..+ |++|
T Consensus 204 pn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~ 281 (307)
T PF05770_consen 204 PNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYY 281 (307)
T ss_dssp ----SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEE
T ss_pred CCCCcccccccccceeccccCCccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEE
Confidence 0 000 00000 000111 1111245688899999999998 5777999998777 7899
Q ss_pred EeeeCccCc
Q 000092 361 FLELNPRLQ 369 (2267)
Q Consensus 361 fLEINpRlq 369 (2267)
++.||-=++
T Consensus 282 VIDINyFPg 290 (307)
T PF05770_consen 282 VIDINYFPG 290 (307)
T ss_dssp EEEEEES--
T ss_pred EEEeccCCC
Confidence 999999776
No 206
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.90 E-value=0.0019 Score=82.66 Aligned_cols=33 Identities=0% Similarity=0.147 Sum_probs=30.5
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
..|.++.+|+|.+++|++||.|++||+|++|+.
T Consensus 62 v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 62 VQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 358899999999999999999999999999974
No 207
>PRK00624 glycine cleavage system protein H; Provisional
Probab=96.89 E-value=0.0015 Score=69.24 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=51.5
Q ss_pred ecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe---e-CCCCccCC---CC-EEEEEecCCCC
Q 000092 691 VAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK---M-AEGQAMQA---GE-LIARLDLDDPS 760 (2267)
Q Consensus 691 ~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i---~-~~G~~v~~---G~-~La~l~~~~~~ 760 (2267)
-.-+-|.|+.+.. +.|++|++||++++||+||+..+|.||.+|+|..+ + ..-+.++. |+ =|++|.++++.
T Consensus 27 a~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~~ 105 (114)
T PRK00624 27 MQENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDEDF 105 (114)
T ss_pred HHHhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECChh
Confidence 3455677887766 55999999999999999999999999999999877 2 11222222 22 57777766553
No 208
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.88 E-value=0.018 Score=67.26 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=71.9
Q ss_pred CCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
-+|.+.+..+....+.+...+. ..-|+.+..|++| |-...|-.|.+++...+.|+.+++. |.+.|
T Consensus 36 i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG----------G~v~~g~~I~d~i~~~~~~v~t~~~--G~aaS~ 103 (200)
T PRK00277 36 LGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG----------GSVTAGLAIYDTMQFIKPDVSTICI--GQAASM 103 (200)
T ss_pred ECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CcHHHHHHHHHHHHhcCCCEEEEEE--eEeccH
Confidence 3678888888887777766654 3579999999999 4455677899999999999999997 66666
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
|++++++. +.+. .++.|+|++++-.|.+.
T Consensus 104 a~~I~~ag--~~~~--r~~~p~s~imih~p~~~ 132 (200)
T PRK00277 104 GAFLLAAG--AKGK--RFALPNSRIMIHQPLGG 132 (200)
T ss_pred HHHHHhcC--CCCC--EEEcCCceEEeccCccc
Confidence 55555553 2233 78999999999888653
No 209
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=96.86 E-value=0.012 Score=66.05 Aligned_cols=89 Identities=19% Similarity=0.110 Sum_probs=68.1
Q ss_pred CccCH---HHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-
Q 000092 1942 QVWFP---DSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG- 2017 (2267)
Q Consensus 1942 G~~~p---~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG- 2017 (2267)
|.+.. .++....+.++.+... -|+++..|+|| |....+-.+.+.+..++.|+++++. |.+.|+
T Consensus 7 g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspG----------G~~~~~~~i~~~i~~~~~pvi~~v~--g~a~s~g 73 (160)
T cd07016 7 GDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPG----------GDVFAGLAIYNALKRHKGKVTVKID--GLAASAA 73 (160)
T ss_pred eEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEc--chHHhHH
Confidence 44444 5777888888887655 89999999999 3455677889999999999999997 655554
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
++++++. |. .+|.|++++++-.|.+.
T Consensus 74 ~~ia~a~----d~--~~~~~~a~~~~~~~~~~ 99 (160)
T cd07016 74 SVIAMAG----DE--VEMPPNAMLMIHNPSTG 99 (160)
T ss_pred HHHHhcC----Ce--EEECCCcEEEEECCccc
Confidence 4545443 65 89999999999877654
No 210
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=96.81 E-value=0.013 Score=65.54 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchh
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2018 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa 2018 (2267)
.|.+.+.+.....+.++.+... -.+|++-.|++|. ....+..+.+++..++.|+++++. |.+.|++
T Consensus 5 ~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg----------~~~~~~~i~~~l~~~~kpvva~~~--g~~~s~g 72 (161)
T cd00394 5 NGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGG----------RVDAGMNIVDALQASRKPVIAYVG--GQAASAG 72 (161)
T ss_pred EeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCc----------CHHHHHHHHHHHHHhCCCEEEEEC--ChhHHHH
Confidence 4777788888899999888663 3567777898872 233456677888888999999997 5556655
Q ss_pred HhhhccccCCccceeecccccEEEeeCccc
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
+..... .|. +||.|++.+++.+|..
T Consensus 73 ~~la~~---~d~--~~~~~~a~~~~~g~~~ 97 (161)
T cd00394 73 YYIATA---ANK--IVMAPGTRVGSHGPIG 97 (161)
T ss_pred HHHHhC---CCE--EEECCCCEEEEeeeEE
Confidence 544432 365 8999999999999864
No 211
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.80 E-value=0.013 Score=68.26 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=77.4
Q ss_pred CCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC
Q 000092 1924 PADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK 2001 (2267)
Q Consensus 1924 PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~ 2001 (2267)
|.+..+.....+.+.. +|.+.+..+.-..+.+...+. -.-||.+..|++| |-.-.|-.|.+++...+
T Consensus 13 ~~~~~~~l~~~r~I~i-~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~ag~aI~d~i~~~~ 81 (197)
T PRK14512 13 IDKSLEKFLKSRSIVI-AGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG----------GDIDAGFAIFNMIRFVK 81 (197)
T ss_pred cchHHHHHhcCcEEEE-CCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhCC
Confidence 3333333333444444 578888888777777766554 3589999999999 45667788999999999
Q ss_pred CCEEEEEccCCcCCc-hhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2002 QPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2002 vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
.|+++++. |.+.+ |+.++++..- . ..++.|+|++-+..|.+.
T Consensus 82 ~~V~t~v~--G~AaSaaslIl~ag~~--~--~R~~~p~s~imiHqP~~~ 124 (197)
T PRK14512 82 PKVFTIGV--GLVASAAALIFLAAKK--E--SRFSLPNARYLLHQPLSG 124 (197)
T ss_pred CCEEEEEE--eeeHhHHHHHHhcCCc--C--ceeECCCCcEEEEcCccc
Confidence 99999997 66666 5555555421 2 278899999999988754
No 212
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.012 Score=74.33 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=77.5
Q ss_pred CCccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCC--cCCch
Q 000092 1941 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMA--ELRGG 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g--~~~GG 2017 (2267)
-|.++|.++.-..|.++.|.++| -.+|...|||| |.+...-+|++++.++++|++.|+.|.| .+..|
T Consensus 34 ~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPG----------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAG 103 (436)
T COG1030 34 DGAIDPASADYLQRALQSAEEENAAAVVLELDTPG----------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAG 103 (436)
T ss_pred cCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCC----------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchh
Confidence 48999999999999999999998 88999999999 5666677899999999999998888765 44459
Q ss_pred hHhhhccccCCccceeecccccEEEeeCc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+|+++++ |. .+|-|+..+|...|
T Consensus 104 tyI~m~~----hi--aaMAPgT~iGaa~P 126 (436)
T COG1030 104 TYILMAT----HI--AAMAPGTNIGAATP 126 (436)
T ss_pred hHHHHhc----Ch--hhhCCCCcccccce
Confidence 9999986 55 88999998887777
No 213
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.79 E-value=0.0015 Score=70.62 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=43.1
Q ss_pred eecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 690 LVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 690 l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
......|.|+.+.. ++|++|++||+++.||+||+..+|.||.+|+|..+
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 79 (127)
T TIGR00527 30 FAQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEV 79 (127)
T ss_pred HHhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEe
Confidence 34567888877754 57999999999999999999999999999999877
No 214
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.69 E-value=0.0048 Score=79.12 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=61.1
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccc--------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2267)
...|.++.+|+|.++.|++||+|++||+|++|+.-.
T Consensus 65 ~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d 144 (397)
T PRK15030 65 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYD 144 (397)
T ss_pred EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 345999999999999999999999999999997411
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCCE--EEEEecCCC
Q 000092 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGEL--IARLDLDDP 759 (2267)
Q Consensus 723 ---------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~~--La~l~~~~~ 759 (2267)
=...|+||.+|+|... +++|+.|.+|+. |++|...++
T Consensus 145 ~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 211 (397)
T PRK15030 145 QALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 211 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecCc
Confidence 0246999999999888 999999999985 677755554
No 215
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=96.64 E-value=0.0034 Score=80.18 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=61.5
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc--------------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM-------------------------------------------- 723 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM-------------------------------------------- 723 (2267)
..|.++++|+|.++.|++||+|++||+|+.|+.--.
T Consensus 64 ~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 64 AEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 469999999999999999999999999999975200
Q ss_pred ---------------------------ceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCCC
Q 000092 724 ---------------------------CMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDDP 759 (2267)
Q Consensus 724 ---------------------------~~~l~ap~~G~v~~i-~~~G~~v~~G--~~La~l~~~~~ 759 (2267)
...|+||.+|+|... +.+|+.|.+| ++|++|...++
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~ 209 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDP 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCc
Confidence 247999999999877 9999999996 58988876655
No 216
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.56 E-value=0.027 Score=65.50 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=72.3
Q ss_pred cCCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc
Q 000092 1939 QAGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016 (2267)
Q Consensus 1939 ~~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G 2016 (2267)
..||.+.+.++..+...+...+.. .-|+.+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 29 fl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG----------G~v~~g~aIyd~m~~~~~~V~t~~~--G~AaS 96 (196)
T PRK12551 29 FLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG----------GSVYDGLGIFDTMQHVKPDVHTVCV--GLAAS 96 (196)
T ss_pred EECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EEehh
Confidence 457889999998888777766653 489999999999 4455677899999999999999998 76666
Q ss_pred hh-HhhhccccCCccceeecccccEEEeeCccch
Q 000092 2017 GA-WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2017 Ga-~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
.| .+.++. +....+|.|+|++.+-.|.+.
T Consensus 97 ~AslIl~aG----~~~~R~~~p~a~iMIHqP~~~ 126 (196)
T PRK12551 97 MGAFLLCAG----AKGKRSSLQHSRIMIHQPLGG 126 (196)
T ss_pred HHHHHHhCC----CCCceecCCCCEEEEecCCcc
Confidence 44 434443 222378999999999988643
No 217
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.45 E-value=0.021 Score=67.08 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=72.0
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+....+.+..++.. .-|+.+..|++| |-.-.|-.|.+++...+.|+++++. |.+.+ |
T Consensus 41 ~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~~g~~I~d~i~~~~~~v~t~~~--G~aaSaa 108 (207)
T PRK12553 41 GGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG----------GSVTAGDAIYDTIQFIRPDVQTVCT--GQAASAG 108 (207)
T ss_pred cceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhcCCCcEEEEE--eehhhHH
Confidence 5788899999988888877665 579999999999 4566778899999999999999998 66666 4
Q ss_pred hHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+++.++.. ... .+|.|+|++.+-.|.
T Consensus 109 ~lI~~ag~--~~~--R~~~p~s~imiH~p~ 134 (207)
T PRK12553 109 AVLLAAGT--PGK--RFALPNARILIHQPS 134 (207)
T ss_pred HHHHHcCC--cCc--EEECCCchhhhcCcc
Confidence 44455442 122 689999999999886
No 218
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=96.43 E-value=0.0056 Score=77.78 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=31.2
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
..|.||++|.|.++.|++||+|++||+|++|+.
T Consensus 62 ~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 62 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 458999999999999999999999999999986
No 219
>PRK12784 hypothetical protein; Provisional
Probab=96.39 E-value=0.0096 Score=57.63 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=63.6
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEcccccee-eecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~-l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.+.||.-|+|-+++|.+++.|-+=++|+.|+.|.-+++ |..-.+|-|+.+ +.+||.+.++.+|+.++.|
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 47899999999999999999999999999999987777 455789999999 9999999999999999865
No 220
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=96.38 E-value=0.059 Score=62.58 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=70.6
Q ss_pred cccCCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC
Q 000092 1937 VPQAGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2014 (2267)
Q Consensus 1937 ~~~~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~ 2014 (2267)
+-..+|.+.+..+..+..-+...+. ..-|+.+..|++| |-...|-.|.+.+...+.|+.+++. |.+
T Consensus 28 iI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG----------G~v~~g~~I~d~l~~~~~~v~t~~~--G~A 95 (191)
T TIGR00493 28 IIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG----------GSITAGLAIYDTMQFIKPDVSTICI--GQA 95 (191)
T ss_pred EEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEE--Eee
Confidence 3345788888777766655544443 3579999999999 4456778899999999999999987 766
Q ss_pred Cc-hhHhhhccccCCccceeecccccEEEeeCccc
Q 000092 2015 RG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2015 ~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
.+ |++++++.. .+. .+|.|+|++.+-.|.+
T Consensus 96 aSaaslI~~aG~--~~~--r~~~p~s~imiH~p~~ 126 (191)
T TIGR00493 96 ASMGAFLLSAGA--KGK--RFSLPNSRIMIHQPLG 126 (191)
T ss_pred ccHHHHHHhcCC--CCc--EEecCCceEEEecCcc
Confidence 66 555555432 223 6889999999999865
No 221
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=96.37 E-value=0.0058 Score=78.84 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=60.5
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccc--------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2267)
...|.++++|+|.++.|++||+|++||+|++|..-.
T Consensus 87 ~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld 166 (415)
T PRK11556 87 TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELD 166 (415)
T ss_pred EEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Confidence 456999999999999999999999999999995410
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCC--EEEEEecCCC
Q 000092 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGE--LIARLDLDDP 759 (2267)
Q Consensus 723 ---------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~--~La~l~~~~~ 759 (2267)
-...|+||++|+|... +++|+.|.+|+ .|++|...++
T Consensus 167 ~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 233 (415)
T PRK11556 167 AQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTHP 233 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecCCc
Confidence 0347999999999888 99999999985 5777654443
No 222
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.35 E-value=0.0059 Score=78.00 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=60.4
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc---------c------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---------K------------------------------------ 722 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM---------K------------------------------------ 722 (2267)
..|.++.+|+|.++.|++||+|++||+|++|+.= |
T Consensus 62 ~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~ 141 (385)
T PRK09859 62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDT 141 (385)
T ss_pred EEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 3589999999999999999999999999999831 0
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCCC--EEEEEecCCC
Q 000092 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGE--LIARLDLDDP 759 (2267)
Q Consensus 723 --------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~--~La~l~~~~~ 759 (2267)
=...|+||.+|+|... +.+|+.|.+|+ +|++|...++
T Consensus 142 a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 207 (385)
T PRK09859 142 ARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDP 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecCC
Confidence 1257999999999877 99999999995 6877755443
No 223
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=96.32 E-value=0.047 Score=62.39 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=79.7
Q ss_pred hhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccc
Q 000092 227 QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQ 306 (2267)
Q Consensus 227 ~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvq 306 (2267)
....||+|||--.+.+|.|=.+|+|..++.+...-+... .+-+.+|.||+....+.+|-+++.+ .++ .|. |+
T Consensus 47 s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll~~~--~~Y~T~EPfId~kyDirvqkIG~~y---kA~-~R~-si- 118 (203)
T PF02750_consen 47 SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLLAIT--KDYATTEPFIDAKYDIRVQKIGNNY---KAY-MRT-SI- 118 (203)
T ss_dssp S-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHHHHH--TS-EEEEE---EEEEEEEEEETTEE---EEE-EEE-ES-
T ss_pred cCCCCCEEEEEccccCceeEEEEccHHHHHHHHHHHHhc--CceEEeeccccceeEEEEEEEcCeE---EEE-EEc-cc-
Confidence 345799999999999999999999999888765544422 4578999999887888888887643 332 231 11
Q ss_pred cccce------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 307 RRHQK------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 307 rr~qK------iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
..+.| ..|..|. .++....+.++.+.+|---++.||.+.. ++|+-|++|+|-
T Consensus 119 s~nWK~N~gsa~lEqi~~-------~~ryk~Wvd~~s~lfGGlDI~~v~ai~~-kdGke~Iievnd 176 (203)
T PF02750_consen 119 SGNWKANTGSAMLEQIAM-------TERYKLWVDECSELFGGLDICAVDAIHG-KDGKEYIIEVND 176 (203)
T ss_dssp SSTSSTTSSSEEEEEE----------HHHHHHHHHHGGGGG--SEEEEEEEEE-TTS-EEEEEEE-
T ss_pred cccccccccchheeecCC-------ChHHHHHHHHHHHHcCCccEEEEEEEEc-CCCCEEEEEecC
Confidence 01112 2333332 2566667888888897778899999998 599999999995
No 224
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=96.16 E-value=0.054 Score=61.26 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=69.4
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
.|.+.+..+....+.+..++.. .-|+++..|+|| |..-.+-.|.+++...+.|+++++. |.+.+ |
T Consensus 6 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG----------G~v~~~~~i~~~i~~~~~~v~~~~~--g~aaS~~ 73 (162)
T cd07013 6 TGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG----------GDVFAGMAIYDTIKFIKADVVTIID--GLAASMG 73 (162)
T ss_pred ccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC----------CcHHHHHHHHHHHHhcCCCceEEEE--eehhhHH
Confidence 3677788888888888777654 379999999999 3455677889999999999999987 66666 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++... .. .++.|++++++-.|-+.
T Consensus 74 ~~i~~a~~~--g~--r~~~p~a~~~ih~~~~~ 101 (162)
T cd07013 74 SVIAMAGAK--GK--RFILPNAMMMIHQPWGG 101 (162)
T ss_pred HHHHHcCCC--Cc--EEEecCEEEEEccCccc
Confidence 555554422 12 57778999988777553
No 225
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=96.16 E-value=0.025 Score=64.85 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=93.7
Q ss_pred CCccCHHHHHHHHHHHHHh--cccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-
Q 000092 1941 GQVWFPDSATKTAQALMDF--NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG- 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a--~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG- 2017 (2267)
+|.+.+..+......+... ....-|+.++.|++| |.+..|-.+.+++..++.|+.+++. |.+.+.
T Consensus 22 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG----------G~v~~g~~i~~~i~~~~~~v~t~~~--G~aaSaa 89 (182)
T PF00574_consen 22 NGPIDEESANRLISQLLYLENEDKNKPINIYINSPG----------GDVDAGLAIYDAIRSSKAPVTTVVL--GLAASAA 89 (182)
T ss_dssp ESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE----------BCHHHHHHHHHHHHHSSSEEEEEEE--EEEETHH
T ss_pred CCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC----------CccHHHHHHHHHHHhcCCCeEEEEe--Cccccce
Confidence 5788888888877665444 336689999999999 5567788999999999999999998 666664
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2097 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~ 2097 (2267)
+.+.++. +..+-+|.|+|.+.+-.|.....- ...++...+..++..-..+.+.+.+. ...+.++ +++
T Consensus 90 ~~i~~ag----~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~-tg~~~~~---i~~--- 156 (182)
T PF00574_consen 90 TLIFLAG----DKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAER-TGLSKEE---IEE--- 156 (182)
T ss_dssp HHHHHTS----STTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHH-HTS-HHH---HHH---
T ss_pred ehhhhcC----CcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHH-hCCcHHH---HHH---
Confidence 4444443 221237889999999888654332 22333333322222111111111111 0111111 111
Q ss_pred HHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2098 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2098 ~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
+ -..+.+=+|..+++.|+||.|+..
T Consensus 157 -----~---------~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 157 -----L---------MDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp -----H---------CSSTEEEEHHHHHHHTSSSEEESS
T ss_pred -----H---------HhCCccccHHHHHHcCCCCEeccC
Confidence 0 012345579999999999999864
No 226
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.13 E-value=0.059 Score=63.72 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=67.9
Q ss_pred CCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
||.+....+..+...+-..+. .+-||.+..|++| |..-.|-.|.+++...+.|+.+++. |-+.+ |
T Consensus 60 ~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG----------Gsv~aGlaIyd~m~~~~~~V~tv~~--G~AAS~A 127 (221)
T PRK14514 60 GTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG----------GSVYAGLGIYDTMQFISSDVATICT--GMAASMA 127 (221)
T ss_pred CCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EEehhHH
Confidence 677777777776664433332 3589999999999 4455677899999999999999998 77776 4
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+.+.++... .. .+|.|+|++.+-.|.+.
T Consensus 128 slIl~aG~~--gk--R~~~pna~iMiHqP~~~ 155 (221)
T PRK14514 128 SVLLVAGTK--GK--RSALPHSRVMIHQPLGG 155 (221)
T ss_pred HHHHhcCCC--Cc--eeeCCCCEEEeccCCcc
Confidence 444444322 22 68899999999888754
No 227
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=96.05 E-value=0.13 Score=60.35 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=59.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC--CCEEEEEccCCcCC-c
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK--QPVFVYIPMMAELR-G 2016 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~--vP~i~vI~~~g~~~-G 2016 (2267)
|++. .+...+.++++.+.. .+ ..||+-.|++|.+ +..+..+..++..++ .|+++++- |-+. |
T Consensus 9 g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~----------~~~~~~l~~~i~~~~~~kpvia~v~--g~a~s~ 75 (207)
T TIGR00706 9 GAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGT----------VVASEEIYEKLKKLKAKKPVVASMG--GVAASG 75 (207)
T ss_pred EEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCC----------HHHHHHHHHHHHHhcCCCCEEEEEC--CccchH
Confidence 4444 456777888887754 23 4677778888732 223455666666666 99999997 5554 5
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
|.|+++.+ |. +||.|++.+|..|.-
T Consensus 76 g~~la~aa----D~--i~a~p~a~vg~iGv~ 100 (207)
T TIGR00706 76 GYYIAMAA----DE--IVANPGTITGSIGVI 100 (207)
T ss_pred HHHHHhcC----CE--EEECCCCeEEeeeEE
Confidence 66666654 66 999999998877663
No 228
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=96.04 E-value=0.11 Score=60.81 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=68.1
Q ss_pred CCCccCHHHHHHHH-HHHHHhcc-cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch
Q 000092 1940 AGQVWFPDSATKTA-QALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2017 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~a-rai~~a~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG 2017 (2267)
-+|.+.+..+..+. +.+.+... ..-|+.+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+.
T Consensus 35 l~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG----------G~v~~g~aIyd~m~~~~~~V~Tv~~--G~AaS~ 102 (200)
T CHL00028 35 LGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG----------GSVISGLAIYDTMQFVKPDVHTICL--GLAASM 102 (200)
T ss_pred ECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EehHHH
Confidence 46777777776665 44444433 4689999999999 3455677899999999999999998 777774
Q ss_pred h-HhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 A-WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a-~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
| .+.++... .. .+|.|+|++.+-.|.+.
T Consensus 103 aslIl~aG~k--g~--R~~~p~s~imiHqp~~~ 131 (200)
T CHL00028 103 ASFILAGGEI--TK--RLAFPHARVMIHQPASS 131 (200)
T ss_pred HHHHHhCCCC--CC--EEecCCCeEEEecCccC
Confidence 4 44444322 12 68899999999888654
No 229
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=96.00 E-value=0.057 Score=61.55 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch
Q 000092 1940 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2017 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG 2017 (2267)
.+|.+.+..+......+..++.. .-|+.+..|+|| |-.-.|-.|.+.+...+.|+.+++. |.+.++
T Consensus 14 i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG----------G~v~~~~~i~~~l~~~~~~v~t~~~--g~aaS~ 81 (171)
T cd07017 14 LGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG----------GSVTAGLAIYDTMQYIKPPVSTICL--GLAASM 81 (171)
T ss_pred EcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEE--eEehhH
Confidence 46888888888877777777654 379999999999 3455667888889889999999998 766665
Q ss_pred hHh-hhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWV-VVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~v-v~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+.+ .++... .. .+|.|+|++.+-.|.+.
T Consensus 82 ~~~i~~~g~~--~~--r~~~~~a~~~~h~~~~~ 110 (171)
T cd07017 82 GALLLAAGTK--GK--RYALPNSRIMIHQPLGG 110 (171)
T ss_pred HHHHHHcCCC--CC--EEEccchHHHHcCCCcc
Confidence 544 444322 13 78899999988888653
No 230
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.96 E-value=0.033 Score=74.24 Aligned_cols=111 Identities=14% Similarity=0.237 Sum_probs=73.5
Q ss_pred eeeEeecCeEEEEEEEeec-----CceEEEEECCeEEEEEEEEec---------------CCceEEEeCCceEEEEeeec
Q 000092 607 QVSLNIEGSKYRIDMVRRG-----PGSYTLRMNESEIEAEIHTLR---------------DGGLLMQLDGNSHVVYAEEE 666 (2267)
Q Consensus 607 ~vel~~~g~~Y~v~v~~~g-----~~~y~v~inG~~~~V~v~~l~---------------dg~~~v~~~G~s~~v~~~e~ 666 (2267)
.+++..+|+.|.|++...+ .....+.+||+..++.+...+ .+.+..-+.|....+.+++
T Consensus 465 e~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~- 543 (596)
T PRK14042 465 EFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSA- 543 (596)
T ss_pred EEEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcceEEEEEEeCC-
Confidence 3555689999999997754 345677889988777554211 1223333444444443332
Q ss_pred ccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 667 AAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 667 ~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
+-.|..+..-+.++...-.+.|.||..|+|.+++|++|+.|..||+|++||+
T Consensus 544 --Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 544 --GDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred --CCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 2223333333344444445789999999999999999999999999999984
No 231
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=95.88 E-value=0.11 Score=60.62 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
-||.+.+..+.-+..-+-..+.. .-|+-+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 32 l~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG----------G~v~~GlaIyd~m~~~~~~V~Ti~~--G~AaS~ 99 (201)
T PRK14513 32 VGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG----------GEVYAGLAIYDTMRYIKAPVSTICV--GIAMSM 99 (201)
T ss_pred ECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CchhhHHHHHHHHHhcCCCEEEEEE--eeehhh
Confidence 37888888888886666555543 579999999999 3455677899999999999999998 77666
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
++.+.++.. ... .+|.|+|++-+=.|.+.
T Consensus 100 As~il~aG~--kgk--R~~~pna~iMIHqp~~~ 128 (201)
T PRK14513 100 GSVLLMAGD--KGK--RMALPNSRIMIHQGSAG 128 (201)
T ss_pred HHHHHhcCC--CCc--EEecCCeEEEEecCCCC
Confidence 444444432 112 57889999988888654
No 232
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=95.78 E-value=0.043 Score=57.05 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=58.0
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||||+|+|----.+..++++-- .+..+ .++|. |. ......+.+.+ +..|.+.|+++|++
T Consensus 2 kVLviGsGgREHAia~~l~~s~--------~v~~v-~~aPG----N~-G~~~~~~~~~~-------~~~d~~~l~~~a~~ 60 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSP--------SVEEV-YVAPG----NP-GTAELGKNVPI-------DITDPEELADFAKE 60 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCT--------TEEEE-EEEE------T-TGGGTSEEE-S--------TT-HHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhcCC--------CCCEE-EEeCC----CH-HHHhhceecCC-------CCCCHHHHHHHHHH
Confidence 7999999965555566655431 12222 13322 22 22222334444 34678999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHH
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAA 169 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~ 169 (2267)
.++|.|++|-...-. .-+.+.|.+.||..+||+.+++++
T Consensus 61 ~~idlvvvGPE~pL~-~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLV-AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp TTESEEEESSHHHHH-TTHHHHHHHTT-CEES--HHHHHH
T ss_pred cCCCEEEECChHHHH-HHHHHHHHHCCCcEECcCHHHHhc
Confidence 999999999321111 124589999999999999988764
No 233
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=95.63 E-value=0.01 Score=73.56 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|.+|.+|+| +++|++||+|++||+|++++.
T Consensus 21 ~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 21 EVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 456999999999 999999999999999999985
No 234
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=95.59 E-value=0.25 Score=58.71 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=63.1
Q ss_pred ccCHHHHHHHHHHHHHhccc-CCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHh
Q 000092 1943 VWFPDSATKTAQALMDFNRE-ELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWV 2020 (2267)
Q Consensus 1943 ~~~p~sa~K~arai~~a~~~-~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~v 2020 (2267)
...+.+...+.+.++.|.+. ++- ||+-.|++|+++.... .....+..++....|+++++- +.+.||-|+
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~-------el~~~i~~~~~~~kpVia~~~--~~~sggy~l 95 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLE-------ELRQALERFRASGKPVIAYAD--GYSQGQYYL 95 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHH-------HHHHHHHHHHHhCCeEEEEeC--CCCchhhhh
Confidence 34467788899999988764 555 4555689998544332 234566667777899999986 545555566
Q ss_pred hhccccCCccceeecccccEEEeeCcc
Q 000092 2021 VVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2021 v~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
++.+ |. +||.|++.+|..|.-
T Consensus 96 asaa----d~--I~a~p~~~vg~iGv~ 116 (222)
T cd07018 96 ASAA----DE--IYLNPSGSVELTGLS 116 (222)
T ss_pred hhhC----CE--EEECCCceEEeeccc
Confidence 6654 65 999999999998763
No 235
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=95.53 E-value=0.029 Score=64.81 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=34.8
Q ss_pred ceEEEEEc---CcccchhhhhhccCCeEEEecCCcceecch
Q 000092 1743 TFTLTYVT---GRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vt---g~~~G~gAyl~~lgd~~I~~~~a~i~ltGp 1780 (2267)
.|+|+.+. |.++|+|++++..||+++|.+++.+++.++
T Consensus 59 kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~ 99 (187)
T cd07020 59 VPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHP 99 (187)
T ss_pred CCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccc
Confidence 59999999 999999999999999999999998877554
No 236
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=95.50 E-value=3.7 Score=58.25 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=81.7
Q ss_pred EEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeec-ccceEEEEcCceeecc--cCCCCCceecCCCceeEEEEccC
Q 000092 629 YTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE-AAGTRLLIDGRTCLLQ--NDHDPSKLVAETPCKLLRYLVSD 705 (2267)
Q Consensus 629 y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~-~~~~~v~v~g~t~~~~--~~~d~~~l~APmPG~vv~~~V~~ 705 (2267)
+.+..+|..|..+|.+.+.+.+.+.+||..-++-+.+= ..++.++.+|+.+.+- .+.+
T Consensus 606 vdli~e~~kY~lkV~rss~~~y~l~mngs~~~v~v~~L~dggLli~~~Gks~t~y~keev~------------------- 666 (2196)
T KOG0368|consen 606 VDLIYEGNKYTLKVVRSSSGTYVLRMNGSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVD------------------- 666 (2196)
T ss_pred eEEEecCcEEEEEEEecCCceEEEEEcCcEEEEEEEEecCCcEEEEECCceEEEEEeeccc-------------------
Confidence 45667999999999999999999999998888877554 4567888889877653 3332
Q ss_pred CCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 706 GSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 706 Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
|-++.-|---+.+|.-.=-..+++|.+|++... |+.|+-|.+||+-|++|
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 233344444555555444456899999998655 99999999999999987
No 237
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=95.49 E-value=0.014 Score=53.16 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=30.9
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|.+|.+|+|..+ +++|+.|++||+|++|+..+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 46899999999999 99999999999999997654
No 238
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=95.49 E-value=0.18 Score=57.81 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcc-cCCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-hHhhh
Q 000092 1946 PDSATKTAQALMDFNR-EELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG-AWVVV 2022 (2267)
Q Consensus 1946 p~sa~K~arai~~a~~-~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG-a~vv~ 2022 (2267)
..+...+.++++.+.+ .++- ||+-.|++|.... . .+....++.++..++.|+|+++- |.+.|| .|+++
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~---~----~~~~~~~i~~~~~~~kpVia~v~--G~a~g~g~~la~ 91 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVT---A----SEVIRAELAAARAAGKPVVASGG--GNAASGGYWIST 91 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHH---H----HHHHHHHHHHHHhCCCCEEEEEC--CchhHHHHHHHH
Confidence 3467788888888765 4555 4444566653221 1 12345567788888999999996 555554 44444
Q ss_pred ccccCCccceeecccccEEEeeCcc
Q 000092 2023 DSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2023 ~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
. +|+ +||.|++.++..+.-
T Consensus 92 a----~D~--i~a~~~a~~~~~G~~ 110 (177)
T cd07014 92 P----ANY--IVANPSTLVGSIGIF 110 (177)
T ss_pred h----CCE--EEECCCCeEEEechH
Confidence 4 477 999999999998763
No 239
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.43 E-value=0.035 Score=71.41 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
....|.||.+|.|.+++|++||.|++||+|+.++.
T Consensus 42 ~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 42 NVKVVQHLEGGIVREILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred CeeecccCCCcEEEEEEeCCCCEecCCCeEEEEcc
Confidence 45568999999999999999999999999999853
No 240
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=95.38 E-value=0.033 Score=69.58 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.7
Q ss_pred CceecCCC---ceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 688 SKLVAETP---CKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 688 ~~l~APmP---G~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
..|.+|.+ |+|.+++|++||+|++||+|++|+.
T Consensus 14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 35889999 9999999999999999999999985
No 241
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.32 E-value=0.033 Score=54.00 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-...+.||..|+|.++++++||.|+.||+|++||
T Consensus 37 ~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 37 MEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999997
No 242
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=95.14 E-value=0.18 Score=59.46 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhccc-CCcEEEE-ecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCC-chhHhhhcc
Q 000092 1948 SATKTAQALMDFNRE-ELPLFIL-ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR-GGAWVVVDS 2024 (2267)
Q Consensus 1948 sa~K~arai~~a~~~-~lPLv~l-~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~-GGa~vv~~~ 2024 (2267)
+..-+.++++.+.+. ++-.|+| .|++|.+.... ......+..+.....|+++++- |-+. ||.|+++.
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~-------~~~~~~l~~~~~~~kpVia~v~--g~a~s~gy~la~~- 91 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVVSAG--GAAASGGYWISTP- 91 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEEC--CeehhHHHHHHHh-
Confidence 467788888887664 6555555 78877443221 1223456678888999999997 6554 45555555
Q ss_pred ccCCccceeecccccEEEeeCcc
Q 000092 2025 RINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2025 ~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|. +||.|++.+|.+|.-
T Consensus 92 ---aD~--i~a~~~a~~gsiGv~ 109 (211)
T cd07019 92 ---ANY--IVANPSTLTGSIGIF 109 (211)
T ss_pred ---CCE--EEEcCCCEEEEeEEE
Confidence 476 999999999887753
No 243
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=94.97 E-value=0.099 Score=64.36 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=25.3
Q ss_pred cEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000092 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2267)
Q Consensus 232 PVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~ 280 (2267)
-+|+||..|+.|+||+++++.+++.+. ......+++||+||+.+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~-----~~~~~~~~vvQkYI~~P 110 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF-----SKNKNQPYVVQKYIENP 110 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC-----HCCTTS-EEEEE--SSB
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH-----hhhhhhhhhhhhccCCC
Confidence 489999999999999999999998754 22335689999999753
No 244
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=94.88 E-value=0.28 Score=57.92 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=56.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEE-ecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-hh
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFIL-ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GA 2018 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l-~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-Ga 2018 (2267)
..+++.......++++.+.. .++-.|+| .|++|.+. .. .......+..+.. ..|+++++- |-+.| |.
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~--~~-----~~~l~~~l~~~~~-~KpViA~v~--g~a~s~gy 89 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEV--AG-----VFELADAIRAARA-GKPIVAFVN--GLAASAAY 89 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcH--HH-----HHHHHHHHHHHhc-CCCEEEEEC--CchhhHHH
Confidence 34566788889999988865 45655555 67776321 11 1112233333444 599999997 54444 55
Q ss_pred HhhhccccCCccceeecccccEEEeeCc
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
|+++. +|. +||.|+|.+|..|.
T Consensus 90 ~lA~~----aD~--i~a~~~a~~g~iG~ 111 (214)
T cd07022 90 WIASA----ADR--IVVTPTAGVGSIGV 111 (214)
T ss_pred HHHhc----CCE--EEEcCCCeEEeeeE
Confidence 55554 476 99999999887765
No 245
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=94.74 E-value=0.51 Score=55.45 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=62.2
Q ss_pred CccC---HHHHHHHHHHHHHhccc-CCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc
Q 000092 1942 QVWF---PDSATKTAQALMDFNRE-ELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016 (2267)
Q Consensus 1942 G~~~---p~sa~K~arai~~a~~~-~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G 2016 (2267)
|.+. +.+...+.++++.+... ++- |++-.|++|.+... .+.....+..+...+.|+++++- |-+.|
T Consensus 9 g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~-------~~~i~~~i~~~~~~~kpvia~v~--g~~~s 79 (208)
T cd07023 9 GTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVA-------SEEIYREIRRLRKAKKPVVASMG--DVAAS 79 (208)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHH-------HHHHHHHHHHHHhcCCcEEEEEC--Ccchh
Confidence 4555 67888999999888653 344 55557877743322 12335567778888899999997 54544
Q ss_pred -hhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2017 -GAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2017 -Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
|.|++++ +|. +||.|++.+|..|.-
T Consensus 80 ~g~~lA~a----aD~--i~a~~~s~~g~iG~~ 105 (208)
T cd07023 80 GGYYIAAA----ADK--IVANPTTITGSIGVI 105 (208)
T ss_pred HHHHHHhh----CCE--EEECCCCeEEeCcEE
Confidence 5555554 476 999999999887663
No 246
>PRK07051 hypothetical protein; Validated
Probab=94.72 E-value=0.038 Score=55.25 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.1
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
......|+||.+|+|.++.+++|+.|+.||+|++++
T Consensus 44 ~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 44 MKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 334456999999999999999999999999999986
No 247
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=94.49 E-value=0.056 Score=58.38 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=45.8
Q ss_pred ceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe---eC--CCCccCC----CCEEEEEecCCCCc
Q 000092 696 CKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK---MA--EGQAMQA----GELIARLDLDDPSA 761 (2267)
Q Consensus 696 G~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i---~~--~G~~v~~----G~~La~l~~~~~~~ 761 (2267)
|.|+.+.. ++|++|++|++++.||+.|...++.||.+|+|..+ +. |+ .++. .-=|+.|.+.++..
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~-lln~~p~~~gWl~~i~~~d~~~ 105 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPE-LLNSDPYGDGWLIKIKPSDPEE 105 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TT-HHHHSTTTTTEEEEEEESCGGG
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChH-HhccCCCCCCeEEEEEeCCHHH
Confidence 66666654 45999999999999999999999999999999887 22 32 3322 34488888876543
No 248
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=94.40 E-value=0.072 Score=51.94 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-...|+||++|+|.++++++||.|+.|+++++|+
T Consensus 38 ~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 38 MEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred ceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999884
No 249
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.32 E-value=0.68 Score=53.90 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=94.8
Q ss_pred CCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.++...+..+...+.+... ..-|+.+..|||| |...+|-.|.+.+..-+.|+.+++. |-+.+ |
T Consensus 33 ~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG----------G~V~aG~AIydtm~~ik~~V~ti~~--G~AaSmg 100 (200)
T COG0740 33 GGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG----------GSVTAGLAIYDTMQFIKPPVSTICM--GQAASMG 100 (200)
T ss_pred eeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC----------cccchhHHHHHHHHhcCCCeEEEEe--cHHHhHH
Confidence 344555555555544444333 4689999999999 6667888999999999999999998 54444 6
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2097 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~ 2097 (2267)
+.+.++..- .. -++.|+|++=+=-|.|.+. =...|+...+..++..-..|..-++.. +..+.++ + ++..
T Consensus 101 s~l~~aG~~--g~--r~~lPnsrimIHqP~gg~~--G~a~Di~i~A~ei~~~~~~l~~i~a~~-TGq~~e~---i-~~d~ 169 (200)
T COG0740 101 SVLLMAGDK--GK--RFALPNARIMIHQPSGGAQ--GQASDIEIHAREILKIKERLNRIYAEH-TGQTLEK---I-EKDT 169 (200)
T ss_pred HHHHhcCCC--CC--ceeCCCceEEEecCCccCc--cCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH---H-HHhh
Confidence 666666532 22 4788999988877775431 011122222333332222222222221 1112221 1 1222
Q ss_pred HHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccc
Q 000092 2098 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDK 2138 (2267)
Q Consensus 2098 ~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~ 2138 (2267)
+|+-. =++..+++-|+||.|+...+
T Consensus 170 drd~~----------------msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 170 DRDTW----------------MSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred ccccc----------------CCHHHHHHcCCcceeccccc
Confidence 33333 36899999999999998764
No 250
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.27 E-value=0.32 Score=59.86 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=110.6
Q ss_pred EEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHc
Q 000092 104 QFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAA 183 (2267)
Q Consensus 104 e~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~a 183 (2267)
..|.||..+ .+.+-|.+.+|....--||.....+-++.+...+++. ++...+ -.-.+..++...
T Consensus 47 ~~Y~VP~~T---------L~~~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~a~a-----P~GW~~~fa~~~ 110 (355)
T PF11379_consen 47 PPYFVPDDT---------LVGAQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPDAAA-----PAGWSPAFAERV 110 (355)
T ss_pred ceeecCCcc---------hhhhHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCCCCC-----CCCcCHHHHHHH
Confidence 477887522 2346788889988777788777777677666666632 222111 001112223322
Q ss_pred CCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh--CCcEEEeecCCCCCcCeEEECCHHHHHHHHHH
Q 000092 184 NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV--GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ 261 (2267)
Q Consensus 184 GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I--GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~ 261 (2267)
.=-+.|.. ++.|.+|+..++..+ +-||=+||..+.||+|-+++.+.++|..++..
T Consensus 111 ~~~vL~G~-----------------------tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~ 167 (355)
T PF11379_consen 111 RDAVLPGY-----------------------TVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAA 167 (355)
T ss_pred hhhccCCc-----------------------cccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHc
Confidence 22233332 278999999888764 57999999999999999999999999999987
Q ss_pred HHhh-CCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccc
Q 000092 262 VQGE-VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR 308 (2267)
Q Consensus 262 ~~~e-~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr 308 (2267)
.-.. .....+.+|+-++...-+||--+.-+ |..++.++..|....+
T Consensus 168 ~~~~~l~~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~GtQ~lT~dn 214 (355)
T PF11379_consen 168 LDDAELARHGLVLEEDLEEVVTYSVGQVRVA-GLVASYYGTQRLTRDN 214 (355)
T ss_pred CCHHHHHhCCEEEecccCCCceeeEEEEEEC-CEEEEEeeEeecccCC
Confidence 5432 22457999999988888888754432 5677777666655333
No 251
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.26 E-value=0.15 Score=55.68 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=62.7
Q ss_pred eeeEeecCeEEEEEEEeecCceEEEEE------CCeE--EEEE----EEE---ecCCc--eEEEeCCceEEEEeeecccc
Q 000092 607 QVSLNIEGSKYRIDMVRRGPGSYTLRM------NESE--IEAE----IHT---LRDGG--LLMQLDGNSHVVYAEEEAAG 669 (2267)
Q Consensus 607 ~vel~~~g~~Y~v~v~~~g~~~y~v~i------nG~~--~~V~----v~~---l~dg~--~~v~~~G~s~~v~~~e~~~~ 669 (2267)
.+.+.+||+.|.+++...+...-..-. .... -... ... ...|. +...+.|....+++.+ +
T Consensus 4 ~~~itvng~~y~V~vee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ap~~G~V~~i~V~~---G 80 (130)
T PRK06549 4 KFKITIDGKEYLVEMEEIGAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAV---G 80 (130)
T ss_pred eEEEEECCEEEEEEEEEccCccccccccCccccCCCcccCCccccccCCCCccCCCCCcEEECCCCEEEEEEEeCC---C
Confidence 366788999999999886533100000 0000 0000 000 11122 2334556555555432 2
Q ss_pred eEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 670 ~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
-.+..+..-+.++...-...|.||..|+|.+++|++||.|+.||+|++|
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 2223333333333333456799999999999999999999999999986
No 252
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=94.22 E-value=0.36 Score=57.19 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=61.8
Q ss_pred HHHHH-HHHHHHhcc-cCCcEEEEecCCCCCCchhhhhh----chHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhh
Q 000092 1948 SATKT-AQALMDFNR-EELPLFILANWRGFSGGQRDLFE----GILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVV 2021 (2267)
Q Consensus 1948 sa~K~-arai~~a~~-~~lPLv~l~d~~Gf~~G~~~e~~----gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv 2021 (2267)
.+..+ ++.+-+... ..-|+-+..|++|- +.+. |..-.|-.|.+++...+-|+.+++. |-+.+.|-+.
T Consensus 53 ~a~~iiaqLl~L~~~~~~k~I~lyINSpGG-----sv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~--G~AaS~AslI 125 (222)
T PRK12552 53 VTELIIAQLLYLEFDDPEKPIYFYINSTGT-----SWYTGDAIGFETEAFAICDTMRYIKPPVHTICI--GQAMGTAAMI 125 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCC-----CccccccccccccHHHHHHHHHhcCCCeEEEEE--eehhhHHHHH
Confidence 55554 444444333 46899999999992 2222 2345677899999999999999998 7777754444
Q ss_pred hccccCCccceeecccccEEEeeCccch
Q 000092 2022 VDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2022 ~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+... +.-..+|.|+|++-+=.|.+.
T Consensus 126 l~aG---~kg~R~alpns~iMIHqP~~~ 150 (222)
T PRK12552 126 LSAG---TKGQRASLPHATIVLHQPRSG 150 (222)
T ss_pred HhCC---CCCceecCCCcEEEeccCCcc
Confidence 4331 212267889999988888654
No 253
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=94.09 E-value=0.1 Score=54.60 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=35.7
Q ss_pred EEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 699 LRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 699 v~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
.+..|++||+|++||.|++-+. -|..+|.||.+|+|+.+
T Consensus 42 ~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I 80 (101)
T PF13375_consen 42 AEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAI 80 (101)
T ss_pred ceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEE
Confidence 4578999999999999999986 66889999999999988
No 254
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.92 E-value=0.16 Score=63.38 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=54.3
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM----KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~ 756 (2267)
..++||.+| ++...++.||.|++||+|++|--+ ....+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~-~~~~~v~~G~~l~~i~~ 315 (316)
T cd06252 245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR-RPPGLVRRGDCLAVLAA 315 (316)
T ss_pred EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe-eCCCccCCCCEEEEEec
Confidence 469999999 666889999999999999998654 34678999999988655 23356899999998753
No 255
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=93.88 E-value=0.12 Score=59.53 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=36.1
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp 1780 (2267)
+|++++|.|.+.|+|++++..||+++|.+++.|+..||
T Consensus 59 ~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 59 IPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP 96 (178)
T ss_pred CCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee
Confidence 59999999999999999999999999999999988887
No 256
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=93.79 E-value=0.19 Score=60.50 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=73.2
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhh
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVV 2021 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv 2021 (2267)
+.+..+.+....|+|+.+.+ +.|+..+.+|+| |...+.-+|+.++.++..|+.++|+ +-..-||+.++
T Consensus 70 ~~I~i~dse~v~raI~~~~~-~~~IdLii~TpG----------G~v~AA~~I~~~l~~~~~~v~v~VP-~~A~SAGTlIA 137 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPK-DKPIDLIIHTPG----------GLVDAAEQIARALREHPAKVTVIVP-HYAMSAGTLIA 137 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCC-CCceEEEEECCC----------CcHHHHHHHHHHHHhCCCCEEEEEC-cccccHHHHHH
Confidence 56778889999999999975 458999999999 6677788899999999999998886 55566788888
Q ss_pred hccccCCccceeecccccEEEeeCcc
Q 000092 2022 VDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2022 ~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
++. |- ++|.|+|.+|.++|.
T Consensus 138 LaA----De--IvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 138 LAA----DE--IVMGPGAVLGPIDPQ 157 (285)
T ss_pred HhC----Ce--EEECCCCccCCCCcc
Confidence 875 64 899999999988883
No 257
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=93.78 E-value=0.92 Score=52.24 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=67.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhhh-----------hhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.+.......++++.+.+ ...-+|+|...++ |+.|..-. .....+....++..+..+++|+|+.|
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v 100 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 68889999999999999876 5677777776544 66664311 12345566778888889999999999
Q ss_pred ccCCcCCchhHhhhccccCCccceeecccccEEEeeC
Q 000092 2009 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2009 ~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
- |.+.||++..... .|+ ++|.++++++.-+
T Consensus 101 ~--G~a~g~G~~la~~---~D~--~i~~~~~~~~~pe 130 (195)
T cd06558 101 N--GAALGGGLELALA---CDI--RIAAEDAKFGLPE 130 (195)
T ss_pred C--CeeecHHHHHHHh---CCE--EEecCCCEEechh
Confidence 6 7767755443322 466 7777777766533
No 258
>PRK12999 pyruvate carboxylase; Reviewed
Probab=93.66 E-value=0.31 Score=70.20 Aligned_cols=103 Identities=22% Similarity=0.423 Sum_probs=82.3
Q ss_pred eEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeec
Q 000092 650 LLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729 (2267)
Q Consensus 650 ~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~a 729 (2267)
+.+.+||+.+.|.+.+...... ..........++..|.|||||+|++|+|++||.|++||+|++|||||||++|.|
T Consensus 1043 ~~~~vnG~~~~V~v~d~~~~~~----~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~A 1118 (1146)
T PRK12999 1043 VYFELNGQPREVQVRDRSVKST----VAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITA 1118 (1146)
T ss_pred EEEEECCEEEEEEEecCccccc----cccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccccceEEec
Confidence 4556666666666654332111 011112244567899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 730 PASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 730 p~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
|.+|+|+.+ +++|+.|+.||+|++|++
T Consensus 1119 p~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1119 PVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 999999999 999999999999999863
No 259
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.65 E-value=0.18 Score=67.77 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=64.9
Q ss_pred ceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEE-E----ec-CCceEEEeCCceEEEEeeecccceEEEEcCce
Q 000092 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIH-T----LR-DGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2267)
Q Consensus 605 ~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~-~----l~-dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t 678 (2267)
...+.+.+||+.|.+++...++- -.+...+........ . .. ...+...+.|....+.+++ +-.|..+..-
T Consensus 477 ~~~~~~~vnG~~~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V~~---Gd~V~~Gd~l 552 (593)
T PRK14040 477 SETYTVEVEGKAYVVKVSEGGDI-SQITPAAPAAAPAAAAAAAPAAAAGEPVTAPLAGNIFKVIVTE---GQTVAEGDVL 552 (593)
T ss_pred CeEEEEEECCEEEEEEECCCCcc-ccccccccccccccccccccCCCCCceEECCccEEEEEEEeCC---CCEeCCCCEE
Confidence 45688889999999999765421 122223322221110 0 01 1133444556555544432 2222222222
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
+.++...-.+.|.||.+|+|.++.|++||.|+.||+|++|
T Consensus 553 ~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 553 LILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred EEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 3333333346799999999999999999999999999987
No 260
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=93.51 E-value=0.11 Score=57.55 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.+.|.||..|+|.+++|++||.|+.||+|++|+
T Consensus 107 eneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 107 ENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 467999999999999999999999999999997
No 261
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.51 E-value=0.16 Score=62.86 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=53.6
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc---ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEe
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLD 755 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM---KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~ 755 (2267)
..++||-.| ++.++|+.||.|++||+|+.|=.+ +-+.+|+|+.+|+|......+ .+++|+++..+.
T Consensus 257 ~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~-~v~~Gdl~~~v~ 325 (331)
T COG3608 257 EMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR-LVQPGDLLKVVG 325 (331)
T ss_pred ceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc-ccCCCCeeeeec
Confidence 459999999 778999999999999999999888 788899999999986553222 355567777653
No 262
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=93.43 E-value=0.094 Score=56.68 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=42.6
Q ss_pred eecCCCceeEEEE-ccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 690 LVAETPCKLLRYL-VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 690 l~APmPG~vv~~~-V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
...-+-|.|+-+. .+.|++|++|+++++||+-|-..+|.||.+|+|..+
T Consensus 33 ~aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev 82 (131)
T COG0509 33 YAQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82 (131)
T ss_pred HHHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence 3445678888874 578999999999999999999999999999998776
No 263
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=92.98 E-value=0.26 Score=61.88 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=52.9
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM----KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l 754 (2267)
.-++||.+| ++...++.||.|++||++++|=-. ....+|+||.+|+|-.. ...-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~G-i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~-~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDG-LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR-HFPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCe-EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE-eCCCccCCCCEEEEe
Confidence 459999999 455889999999999999999653 24678999999998764 344678888988876
No 264
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.97 E-value=0.24 Score=61.41 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc---ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM---KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l 754 (2267)
...|+||.+| ++...++.||.|++||+|++|=-. ....+++||.+|+|-.+ ...-.|.+|+.|+.|
T Consensus 229 ~~~v~A~~~G-l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~-~~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSG-IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL-REYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCe-EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe-ecCCeecCCceEEEe
Confidence 3458999999 566779999999999999999553 34678999999988665 334678889988876
No 265
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.94 E-value=0.25 Score=60.97 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=51.8
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc--ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM--KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM--KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l 754 (2267)
..++||.+|.+. ..++.||.|++||+++.|--. ....+|+||.+|+|.. ....-.|.+|+.|+.|
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~-~~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG-RNNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE-ecCCCccCCCCEEEEe
Confidence 469999999755 689999999999999999542 1236899999999844 4455568899998876
No 266
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=92.43 E-value=1.4 Score=53.00 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhh---------hhhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
...++++.......+++.++. .++-+|++...++ |+.|..- ......+....++..+..+..|+|+.|-
T Consensus 19 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~ 98 (245)
T PF00378_consen 19 RNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVN 98 (245)
T ss_dssp TTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccc
Confidence 468899999999999999876 4545677655443 7766531 1233445678889999999999999997
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+. .++. .|+ ++|.+++.++.
T Consensus 99 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 125 (245)
T PF00378_consen 99 --GHAVGGGFELALA----CDF--RIAAEDAKFGF 125 (245)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTTEEET
T ss_pred --ccccccccccccc----cce--EEeecccceee
Confidence 66666544 3443 477 88888888665
No 267
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.92 Score=53.94 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCccCHHHHHH-HHHHHHHh-cccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATK-TAQALMDF-NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K-~arai~~a-~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
-||.+.++.+.- +||++-+- .....||..+.|+|| |..-.|-.|.+.+.-.+-|+-++.+ |-+.+
T Consensus 97 lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG----------G~vtaglAIYDtMq~ik~~V~Tic~--G~Aas~ 164 (275)
T KOG0840|consen 97 LGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG----------GSVTAGLAIYDTMQYIKPDVSTICV--GLAASM 164 (275)
T ss_pred eCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC----------CccchhhhHHHHHHhhCCCceeeeh--hhHHhH
Confidence 367777766554 56777654 447899999999999 4456778899999999999999998 77777
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccchh
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2050 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav 2050 (2267)
||+...+.+-+ . -||.|++++-+=-|.|.+
T Consensus 165 aalLLaaG~KG--~--R~alPnsriMIhQP~gga 194 (275)
T KOG0840|consen 165 AALLLAAGAKG--K--RYALPNSRIMIHQPSGGA 194 (275)
T ss_pred HHHHHhcCCCc--c--eeecCCceeEEeccCCCc
Confidence 55554444332 2 689999999998888764
No 268
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=92.29 E-value=0.22 Score=60.11 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=59.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. |...+.+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~e-A~~ 172 (249)
T PRK07110 94 PIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAE-LKK 172 (249)
T ss_pred CCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 469999999999999999999999999999864 3322 2233555555332 11233344443 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
.|++|.++++ .+..+.+.++..-+
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~~l 196 (249)
T PRK07110 173 RGVPFPVLPR-AEVLEKALELARSL 196 (249)
T ss_pred cCCCeEEeCh-HHHHHHHHHHHHHH
Confidence 9999999974 45556666654433
No 269
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=92.29 E-value=0.6 Score=67.14 Aligned_cols=125 Identities=16% Similarity=0.352 Sum_probs=99.6
Q ss_pred ceEEEEE-CCeEEEEEEEEec----CC--ceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeE
Q 000092 627 GSYTLRM-NESEIEAEIHTLR----DG--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLL 699 (2267)
Q Consensus 627 ~~y~v~i-nG~~~~V~v~~l~----dg--~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv 699 (2267)
..+.+.+ +|+.+.|++...+ +| .+.+.+||..+.+.+.+..... .+......+..++++|.|||||+|+
T Consensus 1011 ~e~~v~~~~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~----~~~~~~KAd~~~~~~I~a~~~G~v~ 1086 (1143)
T TIGR01235 1011 EEIEVDIEKGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKA----EAAVRRKADPGNPAHVGAPMPGVII 1086 (1143)
T ss_pred cEEEEEecCCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccc----ccccccccccccCceeecCCCcEEE
Confidence 4567777 5777777665432 23 3457789999988876654211 1122222345678899999999999
Q ss_pred EEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 700 RYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 700 ~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
+|+|++||+|++||+|++||||||+++|.||.+|+|+.+ +++|+.|+.|++|++|+
T Consensus 1087 ~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1087 EVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred EEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 999999999999999999999999999999999999998 99999999999999985
No 270
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=0.33 Score=59.12 Aligned_cols=210 Identities=16% Similarity=0.124 Sum_probs=126.1
Q ss_pred HHcCCCEEEeCCCcC--CCCCchH---HHHHHcCCeEeCCCHHHHHHhcCHHHHHH----HHHHcC---CCCCCCCCCCc
Q 000092 128 EMTRVDAVWPGWGHA--SEIPELP---DTLSTKGIIFLGPPATSMAALGDKIGSSL----IAQAAN---VPTLPWSGSHV 195 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~--sEn~~la---~~l~~~GI~fiGPs~eam~~lgDK~~~k~----laq~aG---VPtpp~~~~~~ 195 (2267)
+....|+|+.+-+-. .+|.++. ..+...||+++ ++...+-...||-..+. +..+.| +|..+-..
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--- 227 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--- 227 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee---
Confidence 455778888775432 2444454 44566899998 77888888888765443 334455 44433111
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
| -+- ......-.||+|+|=-.+-.|.|-.+|+|-+||.+.-.-+.- . ....-+|.
T Consensus 228 ---------------y-----PnH---K~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval-~-~Tyat~ep 282 (488)
T KOG3895|consen 228 ---------------Y-----PNH---KEMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVAL-T-KTYATAEP 282 (488)
T ss_pred ---------------c-----CCc---hhhccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHH-H-hhhhhccc
Confidence 1 111 112233459999999999999999999999998764332221 1 12346788
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCC-HHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP-LETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~-~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
||+....+.||-++..|...+- + ++ -.|.|....+ ..+. -...++-......+.+.+|---+|.|+.+..
T Consensus 283 FiDaKYDiriQKIG~nYKaymR---t--sI-sgnWKtNtGS--amLEQIamseRyklwvdtcse~fGgldICav~alhs- 353 (488)
T KOG3895|consen 283 FIDAKYDIRIQKIGHNYKAYMR---T--SI-SGNWKTNTGS--AMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHS- 353 (488)
T ss_pred cccccceeehhhhhhhHHHHhh---h--hh-ccCcccCchH--HHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeec-
Confidence 8877677888877765532221 0 11 1233321111 1010 0112333445566778888888999999987
Q ss_pred cCCcEEEeeeCcc---CcCCccee
Q 000092 355 ETGEYYFLELNPR---LQVEHPVT 375 (2267)
Q Consensus 355 ~~g~~yfLEINpR---lqgehpvt 375 (2267)
++|+=|++|+|-- +=|||..-
T Consensus 354 KdGrd~i~eV~d~smpliGeh~ee 377 (488)
T KOG3895|consen 354 KDGRDYIIEVMDSSMPLIGEHQEE 377 (488)
T ss_pred ccchhheeeeccccccccccchhH
Confidence 6899999999983 34666443
No 271
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=92.23 E-value=1.9 Score=51.42 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhh--------hhchHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL--------FEGILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e--------~~gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..+.++......++++.+. ...-+|++...+ .|+.|..-. .....+.+..++..+..+..|+|+.|- |
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~--G 100 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACT--G 100 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEc--C
Confidence 4788999999999999887 455666666544 377665211 112233345677788889999999996 6
Q ss_pred cCCchhHh-hhccccCCccceeecccc-cEEEe
Q 000092 2013 ELRGGAWV-VVDSRINSDHIEMYADRT-AKGNV 2043 (2267)
Q Consensus 2013 ~~~GGa~v-v~~~~~n~d~~~~~A~p~-A~~gv 2043 (2267)
-+.||+.. ++. .|+ ++|.++ ++++.
T Consensus 101 ~a~GgG~~lal~----~D~--rva~~~~a~f~~ 127 (229)
T PRK06213 101 HAIAKGAFLLLS----ADY--RIGVHGPFKIGL 127 (229)
T ss_pred eeeHHHHHHHHh----CCe--eeEecCCcEEEC
Confidence 66665443 444 477 788887 77765
No 272
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=92.10 E-value=0.23 Score=60.77 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|||+.|.|.|+|||..++..||++|+.+++. +++. |..-+-..+|... .-+.+.+. ++-...
T Consensus 109 ~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~-a~eA~~ 187 (272)
T PRK06142 109 RKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDID-AAEAEK 187 (272)
T ss_pred CCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcC-HHHHHH
Confidence 469999999999999999999999999999875 3332 2223444444322 11112222 233457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.++++.++....+.+|.
T Consensus 188 ~GLv~~vv~~~~~l~~~a~~~a 209 (272)
T PRK06142 188 IGLVNRVYDDADALLAAAHATA 209 (272)
T ss_pred cCCccEecCCHHHHHHHHHHHH
Confidence 9999999986344444555543
No 273
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.98 E-value=0.85 Score=57.16 Aligned_cols=174 Identities=17% Similarity=0.090 Sum_probs=99.5
Q ss_pred ccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhh
Q 000092 1943 VWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVV 2022 (2267)
Q Consensus 1943 ~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~ 2022 (2267)
..+.+...+..+.++..+ .--+|+...||||=++. .. ...++.+..+..-+ |+++++. +=.+-||-|+++
T Consensus 79 ~~~~~~~~~~l~~~~~~~-~vk~vvL~inSPGG~v~---as----~~i~~~l~~l~~~~-PV~v~v~-~~AASGGY~IA~ 148 (317)
T COG0616 79 FIGGDDIEEILRAARADP-SVKAVVLRINSPGGSVV---AS----ELIARALKRLRAKK-PVVVSVG-GYAASGGYYIAL 148 (317)
T ss_pred cccHHHHHHHHHHHhcCC-CCceEEEEEECcCCchh---HH----HHHHHHHHHHhhcC-CEEEEEC-Ceecchhhhhhc
Confidence 334555555555555443 55689999999993322 11 23455666666666 9999886 455566777666
Q ss_pred ccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHH----HHHHhhcCCCHHHHHHHHHHHHH
Q 000092 2023 DSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMA----KLQEAKNNRTLAMVESLQQQIKA 2098 (2267)
Q Consensus 2023 ~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~----~l~~~~~~~~~~~~~~~~~~i~~ 2098 (2267)
+. |. +||.|+|.+|-+|+-.. .....+.|.+++......++ .....-...++++++.++..+.+
T Consensus 149 aA----d~--I~a~p~si~GSIGVi~~------~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e 216 (317)
T COG0616 149 AA----DK--IVADPSSITGSIGVISG------APNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDE 216 (317)
T ss_pred cC----CE--EEecCCceeeeceeEEe------cCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHH
Confidence 64 65 99999999999888444 22333444444322111110 00000124556677766666655
Q ss_pred HHHh---------ccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccch
Q 000092 2099 REKQ---------LLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKS 2139 (2267)
Q Consensus 2099 r~~~---------l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~ 2139 (2267)
..++ -++.+. +-..+...|=+...+.+.|.||++-.-.+.
T Consensus 217 ~y~~F~~~V~~~R~~~~~~-~~~~a~g~v~~g~~A~~~gLVDelg~~~~a 265 (317)
T COG0616 217 TYDEFVDKVAEGRGLSDEA-VDKLATGRVWTGQQALELGLVDELGGLDDA 265 (317)
T ss_pred HHHHHHHHHHhcCCCChhH-HHHHhccceecHHHhhhcCCchhcCCHHHH
Confidence 3211 112222 333444466677888888888888765544
No 274
>PRK06748 hypothetical protein; Validated
Probab=91.93 E-value=0.24 Score=49.96 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=31.5
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...+.||..|+|.+++|++||.|..||+|+.|+.
T Consensus 42 ~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 42 KVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred eEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 3479999999999999999999999999999973
No 275
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=91.87 E-value=0.21 Score=60.64 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=57.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecchH-HHHHhhcccc----ccccccCCccccccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS-ALNKLLGREV----YSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltGp~-al~~~lG~ev----y~s~~~lGG~~i~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++. +++.|+. .+.+.+|... .-+.+.+.+.+ ...-|+
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~lll~g~~~~a~e-A~~~GL 175 (257)
T PRK06495 97 AKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMRLFGHSLTRRMMLTGYRVPAAE-LYRRGV 175 (257)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHHHHhCHHHHHHHHHcCCeeCHHH-HHHcCC
Confidence 369999999999999999999999999999864 4555542 3556666432 11222222222 346899
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000092 1810 VHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
++.++++ .+..+.+.+|..
T Consensus 176 v~~vv~~-~~~~~~a~~~a~ 194 (257)
T PRK06495 176 IEACLPP-EELMPEAMEIAR 194 (257)
T ss_pred cceecCH-HHHHHHHHHHHH
Confidence 9999974 444455555543
No 276
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.72 E-value=0.31 Score=60.24 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc--cccceeeecCCCcEEEEeeCCCCccCCCCEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV--MKMCMPLLSPASGVLQFKMAEGQAMQAGELI 751 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa--MKM~~~l~ap~~G~v~~i~~~G~~v~~G~~L 751 (2267)
+...++||.+| ++...++.||.|++||+|++|=- -....+|+||.+|+|-.+.. .-.|.+|+.|
T Consensus 222 ~~~~v~Ap~~G-~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~-~~~v~~G~~l 287 (288)
T cd06254 222 DVYYVTSPASG-LWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA-TLPVRKGDPL 287 (288)
T ss_pred CCEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC-CCccCCCCcc
Confidence 34579999999 66688999999999999999922 13467899999999866521 2345555544
No 277
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=91.70 E-value=0.23 Score=60.58 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=59.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec---chHHHHHhhccc----cccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt---Gp~al~~~lG~e----vy~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++. +++. |...+-+.+|.. ..-+.+.+.+.+ +..-
T Consensus 101 ~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~~ 179 (265)
T PRK05674 101 KIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRR-AREL 179 (265)
T ss_pred CCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCHHH-HHHC
Confidence 369999999999999999999999999998864 3333 222344445532 222333444433 4578
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
|++|.++++ .+..+.+.+|..-+
T Consensus 180 Glv~~vv~~-~~l~~~a~~~a~~l 202 (265)
T PRK05674 180 GLLAESYPA-AELEAQVEAWIANL 202 (265)
T ss_pred CCcceecCH-HHHHHHHHHHHHHH
Confidence 999999974 45556666665443
No 278
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=91.64 E-value=0.24 Score=59.94 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=56.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcc----ccccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGR----EVYSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~----evy~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |..-+-..+|. +..-+...+.+.+ ...
T Consensus 92 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 170 (255)
T PRK06563 92 SKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQE-ALR 170 (255)
T ss_pred CCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHH-HHH
Confidence 46999999999999999999999999999887533 22 12224445553 2222333444333 447
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+..|.
T Consensus 171 ~Glv~~vv~~~-~l~~~a~~~a 191 (255)
T PRK06563 171 LGLVQEVVPPG-EQLERAIELA 191 (255)
T ss_pred cCCCcEeeCHH-HHHHHHHHHH
Confidence 89999999754 3444444443
No 279
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=91.60 E-value=0.29 Score=59.35 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=57.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c---chHHHHHhhccccc----cccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---GFSALNKLLGREVY----SSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t---Gp~al~~~lG~evy----~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-..+|.... -+...+. ++-....
T Consensus 96 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~-a~eA~~~ 174 (255)
T PRK07112 96 PYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVT-AQQAFSW 174 (255)
T ss_pred CCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCccc-HHHHHHc
Confidence 469999999999999999999999999999876433 2 11223333443321 1112222 2223479
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|++|.+++++++.+..+.+-++-.|
T Consensus 175 Glv~~vv~~~~~~~~~~a~~l~~~~ 199 (255)
T PRK07112 175 GLVDAYGANSDTLLRKHLLRLRCLN 199 (255)
T ss_pred CCCceecCcHHHHHHHHHHHHHhCC
Confidence 9999999876655555544454444
No 280
>PRK05869 enoyl-CoA hydratase; Validated
Probab=91.57 E-value=0.26 Score=58.64 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=59.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+.+.+|... .-+...+.+.+ ...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~e-A~~ 177 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEE-ALA 177 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 469999999999999999999999999998865433 2 2334556666532 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+.+|..
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~ 199 (222)
T PRK05869 178 LGLIDEMVAPD-DVYDAAAAWAR 199 (222)
T ss_pred CCCCCEeeCch-HHHHHHHHHHH
Confidence 89999999754 55566666544
No 281
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=90.81 E-value=0.28 Score=59.36 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=56.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||+.++..||++|+.+++.+.+ . |...+.+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~e-A~~ 176 (255)
T PRK07260 98 PKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEK-ALE 176 (255)
T ss_pred CCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999999976332 2 2223444455322 22223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+..+.
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a 197 (255)
T PRK07260 177 YGFVYRVAESE-KLEKTCEQLL 197 (255)
T ss_pred cCCcceecCHh-HHHHHHHHHH
Confidence 99999999754 3444444443
No 282
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=90.80 E-value=0.37 Score=58.55 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=57.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-..+|... .-+.+.+.+.+ ...
T Consensus 98 ~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~ 176 (260)
T PRK07511 98 PKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER-LHA 176 (260)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 47999999999999999999999999999997533 22 1123444455422 11223344333 457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+.+|.
T Consensus 177 ~Glv~~vv~~~-~~~~~a~~~a 197 (260)
T PRK07511 177 LGVVNRLAEPG-QALAEALALA 197 (260)
T ss_pred cCCccEeeCch-HHHHHHHHHH
Confidence 99999999754 3455555554
No 283
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=90.79 E-value=5 Score=48.88 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++...-..++++.+.+ ..+-+|+|.-.+ .|+.|..-. .....+....++..+..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 26 NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 57888999999999988764 456677776543 376665311 011122334577788999999999997
Q ss_pred cCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.| |..+++. .|+ ++|.++++++.
T Consensus 106 --G~a~GgG~~lal~----cD~--~va~~~a~f~~ 132 (260)
T PRK05809 106 --GFALGGGCELSMA----CDI--RIASEKAKFGQ 132 (260)
T ss_pred --CeeecHHHHHHHh----CCE--EEeeCCCEEeC
Confidence 66655 4444444 376 77777777665
No 284
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=90.76 E-value=0.62 Score=59.30 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc-cc---cceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV-MK---MCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa-MK---M~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l 754 (2267)
...++||-.| ++...++.||.|++||+|++|=- .. -+.+|+||.+|+|-.+ ...-.|.+|+.|+.|
T Consensus 289 ~~~v~Ap~~G-l~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~-~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGG-MVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR-ASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCe-EEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe-cCCccccCCCeEEEe
Confidence 3469999999 56688999999999999999943 21 1223699999986554 556678899999876
No 285
>PF13437 HlyD_3: HlyD family secretion protein
Probab=90.69 E-value=0.28 Score=51.01 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=30.9
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
.|+||..|.|..+.+++|+.|.+|++++.|..+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 489999999999999999999999999999864
No 286
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=90.59 E-value=0.34 Score=59.05 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=57.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhccc----cccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~e----vy~s~~~lGG~~i~~~ 1806 (2267)
..|||+.|.|.|+|||..++..||++|+.+++.+. +. |...+-..+|.. ..-+...+.+.+ ...
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 181 (266)
T PRK05981 103 PCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAET-ALQ 181 (266)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHH-HHH
Confidence 46999999999999999999999999999987532 21 122344444432 222333444444 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.++++ .+..+.+++|..
T Consensus 182 ~Glv~~vv~~-~~~~~~a~~~a~ 203 (266)
T PRK05981 182 WGLVNRVVDD-AELMAEAMKLAH 203 (266)
T ss_pred cCCceEeeCH-hHHHHHHHHHHH
Confidence 8999999975 455666666653
No 287
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=90.44 E-value=0.33 Score=55.84 Aligned_cols=86 Identities=23% Similarity=0.193 Sum_probs=58.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c-c---hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T-G---FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t-G---p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
.+|+|+++.|.|.|+|+.++..||++|+.+++.+.+ . + ...+.+..|... .-+...+- ++-+..
T Consensus 93 ~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~-a~ea~~ 171 (195)
T cd06558 93 PKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRIS-AEEALE 171 (195)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccC-HHHHHH
Confidence 479999999999999999999999999999865432 1 1 122333333322 11112222 233457
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.++++ .+..+.+.+|..
T Consensus 172 ~Glv~~~~~~-~~l~~~a~~~a~ 193 (195)
T cd06558 172 LGLVDEVVPD-EELLAAALELAR 193 (195)
T ss_pred cCCCCeecCh-hHHHHHHHHHHh
Confidence 9999999975 667777777754
No 288
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=90.38 E-value=0.24 Score=59.40 Aligned_cols=84 Identities=23% Similarity=0.143 Sum_probs=55.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|+.++..||++|+.+++.+.+. |-..+.+.+|.... -+...+. ++-...
T Consensus 90 ~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~-a~eA~~ 168 (245)
T PF00378_consen 90 PKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPIS-AEEALE 168 (245)
T ss_dssp SSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEE-HHHHHH
T ss_pred hhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccch-hHHHHh
Confidence 4699999999999999999999999999999864421 11234444444321 0111111 222457
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.|++|.+++++. ..+.++.+
T Consensus 169 ~Glv~~v~~~~~-l~~~a~~~ 188 (245)
T PF00378_consen 169 LGLVDEVVPDEE-LDEEALEL 188 (245)
T ss_dssp TTSSSEEESGGG-HHHHHHHH
T ss_pred hcceeEEcCchh-hhHHHHHH
Confidence 999999998766 44444444
No 289
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=90.36 E-value=0.36 Score=58.97 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=58.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+.+.+|... .-+...+.+.+ ...
T Consensus 106 ~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 184 (269)
T PRK06127 106 AKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAE-ALR 184 (269)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 469999999999999999999999999999975432 2 2233555555332 11222233322 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.++++ .+....+++|...+
T Consensus 185 ~Glv~~vv~~-~~l~~~a~~~a~~l 208 (269)
T PRK06127 185 IGLVHRVTAA-DDLETALADYAATI 208 (269)
T ss_pred cCCCCEeeCH-HHHHHHHHHHHHHH
Confidence 8999999974 55656666665544
No 290
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=90.30 E-value=3.5 Score=50.34 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=62.3
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC---CCCCchhhhh--------hchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR---GFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~---Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.++-.....++++.+++..+-+|+|.-.. -|+.|..-.. .........++..+..+..|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~- 104 (261)
T PRK11423 26 NALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE- 104 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe-
Confidence 57888899999999998876556777776532 3666653211 01112234567788899999999996
Q ss_pred CCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||++ .++. .|+ ++|.++++++.
T Consensus 105 -G~a~GgG~~lala----cD~--~ia~~~a~f~~ 131 (261)
T PRK11423 105 -GSVWGGAFELIMS----CDL--IIAASTSTFAM 131 (261)
T ss_pred -cEEechHHHHHHh----CCE--EEecCCCEecC
Confidence 66666554 4444 366 77777777665
No 291
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=90.20 E-value=0.19 Score=49.46 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=31.3
Q ss_pred cCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 683 ~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
.......+.||.+|+|.++++++||.|..||+|+.|
T Consensus 39 t~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 39 TMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred cCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 333345699999999999999999999999999986
No 292
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=90.09 E-value=0.43 Score=57.40 Aligned_cols=89 Identities=20% Similarity=0.127 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC-Cc-------ceecch----HHHHHhhcccc-----ccccccCCccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QP-------IILTGF----SALNKLLGREV-----YSSHMQLGGPKIM 1804 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~-------i~ltGp----~al~~~lG~ev-----y~s~~~lGG~~i~ 1804 (2267)
..|||+.|.|.|+|||..++..||++|+.++ +. +++..| ..+...+|... .-+...+. ++-.
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~-a~eA 172 (239)
T PLN02267 94 PMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLT-AEEA 172 (239)
T ss_pred CCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCC-HHHH
Confidence 4699999999999999999999999999854 33 344312 22334445322 11222233 2224
Q ss_pred cccCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1805 ATNGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1805 ~~nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
...|++|.+++++.+..+.++++..-+
T Consensus 173 ~~~Glv~~vv~~~~~l~~~a~~~A~~i 199 (239)
T PLN02267 173 VEMGIVDSAHDSAEETVEAAVRLGEEL 199 (239)
T ss_pred HHCCCcceecCCHHHHHHHHHHHHHHH
Confidence 579999999976555556666655433
No 293
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=89.95 E-value=14 Score=45.79 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=62.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC---CCCCchhhh--hh---------chHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR---GFSGGQRDL--FE---------GILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~---Gf~~G~~~e--~~---------gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
.++..+......++++.++. -.+=+|+|.-.. .|+.|..-. .. ...+....++..+..+.+|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 57888999999999998865 456677776653 377775311 00 0111123456778889999999
Q ss_pred EEccCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+...... .|+ ++|.++++++.
T Consensus 113 aV~--G~a~GgG~~lala---cD~--ria~~~a~f~~ 142 (278)
T PLN03214 113 AIR--GACPAGGCAVSLC---CDY--RLQTTEGTMGL 142 (278)
T ss_pred EEc--CcccchHHHHHHh---CCE--EEecCCCEecC
Confidence 996 7666655443332 477 78888877766
No 294
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=89.90 E-value=4.6 Score=49.12 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhh-hh--------hchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD-LF--------EGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~-e~--------~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
-.+.++......++++.++ ..+-+|+|.-.+ .|+.|..- +. ....+....++.++..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-- 100 (255)
T PRK08150 24 NALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH-- 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 5788999999999999887 666677776533 37766531 11 01122345567788899999999996
Q ss_pred CcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||++. ++. .|+ ++|.++++++.
T Consensus 101 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 127 (255)
T PRK08150 101 GAVVGGGLELASA----AHI--RVADESTYFAL 127 (255)
T ss_pred CEEEcHHHHHHHh----CCE--EEEeCCCEEec
Confidence 766665544 433 476 77777777766
No 295
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=89.78 E-value=15 Score=45.27 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h------------------hchHHHHHHHHHHHhc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F------------------EGILQAGSTIVENLRT 1999 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~------------------~gilk~ga~iv~al~~ 1999 (2267)
-.+.++......++++.++. ..+-+|+|.-.+ .|+.|..-. . ....+....++..+..
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (275)
T PLN02664 30 NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQ 109 (275)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998864 466777776543 266665211 0 0111233456778889
Q ss_pred CCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2000 YKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2000 ~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+..|+|+.|- |.+.|| .-+++. .|+ ++|.++++++.
T Consensus 110 ~~kPvIaav~--G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 146 (275)
T PLN02664 110 CRKPVIAAIH--GACIGGGVDIVTA----CDI--RYCSEDAFFSV 146 (275)
T ss_pred CCCCEEEEEC--CccccchHHHHHh----CCE--EEecCCCEecc
Confidence 9999999997 666654 444444 476 77777777655
No 296
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=89.72 E-value=4.3 Score=49.37 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhhh------------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e~------------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++......++++.+++..+-+|+|.-.+ .|+.|..-.. ....+....++..+..+.+|+|+.|
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 100 (256)
T TIGR02280 21 NSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAV 100 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47889999999999999976556667775443 3766653110 0111122446678889999999999
Q ss_pred ccCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.||+.. ++. .|+ ++|.++++++.
T Consensus 101 ~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 128 (256)
T TIGR02280 101 N--GVAAGAGANLALA----CDI--VLAAESARFIQ 128 (256)
T ss_pred C--CeeehHHHHHHHh----CCE--EEecCCCEEeC
Confidence 7 666665443 443 477 88888887764
No 297
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=89.68 E-value=0.43 Score=58.03 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=57.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+...+.+.+ ...
T Consensus 99 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 177 (262)
T PRK08140 99 PLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQ-AEQ 177 (262)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 46999999999999999999999999999987532 21 2223444455321 11223333322 457
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
.|++|.+++++ +..+.+.+|..-+
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~~i 201 (262)
T PRK08140 178 WGLIWRVVDDA-ALADEAQQLAAHL 201 (262)
T ss_pred cCCccEeeChH-HHHHHHHHHHHHH
Confidence 99999999754 4555666654433
No 298
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=89.66 E-value=4.5 Score=49.31 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh--h------chHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--E------GILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~--~------gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.++......++++.++. ..+-+|+|.-.+ .|+.|..-.. . ........++.++..+.+|+|+.|-
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~- 102 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN- 102 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC-
Confidence 47788999999999988764 467778887655 3777763211 0 0111123456778889999999996
Q ss_pred CCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. +++. .|+ ++|.++++++.
T Consensus 103 -G~a~GgG~~lala----cD~--~ia~~~a~f~~ 129 (261)
T PRK03580 103 -GYAFGGGFELALA----ADF--IVCADNASFAL 129 (261)
T ss_pred -CeeehHHHHHHHH----CCE--EEecCCCEEeC
Confidence 66666544 4444 366 77777776655
No 299
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=89.65 E-value=1.4 Score=57.21 Aligned_cols=194 Identities=15% Similarity=0.246 Sum_probs=108.2
Q ss_pred HHHHhcCCCCCccEEEEECc---h--HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC
Q 000092 37 EFCRSLGGKKPIHSILIANN---G--MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG 111 (2267)
Q Consensus 37 ~~~~~~~g~~~~kkVLIan~---G--~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~ 111 (2267)
+-.+..+|..--.+|.|.-- + ..-....+..++.||.++ |+.+.| +++.|......+
T Consensus 174 ~~y~~~~~~~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~v----------I~d~~~-------L~y~~g~L~~~~- 235 (445)
T PF14403_consen 174 DIYRTFGGRVEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCV----------ICDPRD-------LEYRDGRLYAGG- 235 (445)
T ss_pred HHHHHhcCcCCCCcEEEEecccCCccchHHHHHHHHHHcCCceE----------ecChHH-------ceecCCEEEECC-
Confidence 33445666554566777652 2 122356677788888875 233333 334555544432
Q ss_pred CCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCC-----
Q 000092 112 TNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVP----- 186 (2267)
Q Consensus 112 ~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVP----- 186 (2267)
.-+|.|-.-+-... +++-|+ +...|.++..+..+.++|+ -..+.++||..+..+-....-.
T Consensus 236 ------~~ID~VyRR~Vt~e---~l~~~d---~~~~li~Ay~~~av~~vgs--frs~l~hnK~iFaiL~d~~~~~~Lt~e 301 (445)
T PF14403_consen 236 ------RPIDAVYRRFVTSE---LLERYD---EVQPLIQAYRDGAVCMVGS--FRSQLLHNKIIFAILHDERTTAFLTAE 301 (445)
T ss_pred ------EeeehhhHhhhhHH---hhhccc---cchHHHHHHhcCCeEEecc--hhhhhhhhhHHHHHhcChhhcccCCHH
Confidence 12444443333221 111221 3344566666666667655 4567888999888876554322
Q ss_pred -------CCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEE--CCHHHHHH
Q 000092 187 -------TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV--HNDDEVRA 257 (2267)
Q Consensus 187 -------tpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V--~s~eEL~~ 257 (2267)
..||... ++ .+.. .| -...-++.+.+..-.=-+|+||.++.||+||.+= .+.++.++
T Consensus 302 e~~~I~~HvP~T~~---l~--~~~~-----~~----~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~ 367 (445)
T PF14403_consen 302 ERAFIRRHVPWTRL---LT--AGRT-----TY----QGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEA 367 (445)
T ss_pred HHHHHHHhCCceEE---Ec--Cccc-----cc----cccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHH
Confidence 2334320 00 0000 00 0012234444333334589999999999999874 57888888
Q ss_pred HHHHHHhhCCCCcEEEEEecccc
Q 000092 258 LFKQVQGEVPGSPIFIMKVASQS 280 (2267)
Q Consensus 258 a~~~~~~e~~~~~I~VEeyI~g~ 280 (2267)
+++++. +++.++|+|++-.
T Consensus 368 ~l~~a~----~~~yilQe~v~~~ 386 (445)
T PF14403_consen 368 ALEEAA----REPYILQEYVRPP 386 (445)
T ss_pred HHHHHh----cCCcEEEEEecCC
Confidence 888876 4599999999653
No 300
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=89.64 E-value=0.48 Score=57.40 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=51.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecc---hHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTG---FSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltG---p~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++.. ...+-+.+|... .-+.+.+.+.+ ...-
T Consensus 89 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~~ 167 (251)
T TIGR03189 89 PVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAE-GARI 167 (251)
T ss_pred CCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHHC
Confidence 369999999999999999999999999999874 44431 122334444322 11222222222 3479
Q ss_pred CceEEEecCcHH
Q 000092 1808 GVVHLTVSDDLE 1819 (2267)
Q Consensus 1808 Gv~d~~v~dd~e 1819 (2267)
|++|.+++++++
T Consensus 168 Glv~~v~~~~~~ 179 (251)
T TIGR03189 168 GLANAVAEDPEN 179 (251)
T ss_pred CCcceecCcHHH
Confidence 999999976543
No 301
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=89.60 E-value=0.47 Score=57.56 Aligned_cols=86 Identities=21% Similarity=0.166 Sum_probs=57.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+.+ ...
T Consensus 93 ~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 171 (256)
T TIGR02280 93 PLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDART-AAS 171 (256)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 469999999999999999999999999999975432 1 1223444455432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+.+|..
T Consensus 172 ~Glv~~vv~~~-~l~~~a~~~a~ 193 (256)
T TIGR02280 172 WGLIWQVVDDA-ALMDEAQALAV 193 (256)
T ss_pred cCCcceeeChH-HHHHHHHHHHH
Confidence 89999999754 55555655544
No 302
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=89.49 E-value=0.49 Score=57.39 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=55.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |...+-..+|... .-+.+.+.+.+ ...
T Consensus 92 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e-A~~ 170 (255)
T PRK09674 92 NKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQ-AQQ 170 (255)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 3699999999999999999999999999998753 332 2223444455432 11222333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+++|.
T Consensus 171 ~Glv~~vv~~~-~~~~~a~~~a 191 (255)
T PRK09674 171 AGLVSEVFPPE-LTLERALQLA 191 (255)
T ss_pred cCCCcEecChH-HHHHHHHHHH
Confidence 99999999754 3334444443
No 303
>PLN02921 naphthoate synthase
Probab=89.49 E-value=0.55 Score=59.04 Aligned_cols=86 Identities=21% Similarity=0.186 Sum_probs=57.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-..+|... .-+..-+.+.+ ...
T Consensus 161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~e-A~~ 239 (327)
T PLN02921 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASE-ALK 239 (327)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 4699999999999999999999999999998765432 2233555566432 11222222222 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++. .+....+.+|..
T Consensus 240 ~GLV~~vv~~-~~l~~~a~~~a~ 261 (327)
T PLN02921 240 MGLVNTVVPL-DELEGETVKWCR 261 (327)
T ss_pred CCCceEEeCH-HHHHHHHHHHHH
Confidence 8999999974 445555555543
No 304
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=89.49 E-value=0.49 Score=57.56 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=56.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |...+-..+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 176 (261)
T PRK08138 98 PKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPE-ALA 176 (261)
T ss_pred CCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999988653 332 2233444455432 11222333222 347
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +....+++|.
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a 197 (261)
T PRK08138 177 IGLVSEVVEDE-QTLPRALELA 197 (261)
T ss_pred CCCCcEecCch-HHHHHHHHHH
Confidence 89999999754 4445555544
No 305
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=89.48 E-value=0.47 Score=58.20 Aligned_cols=85 Identities=16% Similarity=0.067 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+ +-...
T Consensus 104 ~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A-~eA~~ 182 (275)
T PRK09120 104 QKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTG-RKAAE 182 (275)
T ss_pred CCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCH-HHHHH
Confidence 469999999999999999999999999999875332 2 2233555555432 112233322 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|+++.+++++ +..+.+.+|.
T Consensus 183 ~Glv~~vv~~~-~l~~~a~~~a 203 (275)
T PRK09120 183 MGLVNESVPLA-QLRARTRELA 203 (275)
T ss_pred cCCcceecCHH-HHHHHHHHHH
Confidence 99999999743 3444444443
No 306
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=89.46 E-value=0.5 Score=57.93 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=49.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec---c-hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT---G-FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt---G-p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. | ..-+-..+|... .-+...+.+ +=...
T Consensus 111 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a-~eA~~ 189 (275)
T PLN02664 111 RKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSG-SEAKE 189 (275)
T ss_pred CCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCH-HHHHH
Confidence 4699999999999999999999999999998753 332 1 122344445322 112222222 22357
Q ss_pred cCceEEEecC
Q 000092 1807 NGVVHLTVSD 1816 (2267)
Q Consensus 1807 nGv~d~~v~d 1816 (2267)
-|++|.++++
T Consensus 190 ~GLv~~vv~~ 199 (275)
T PLN02664 190 LGLVSRVFGS 199 (275)
T ss_pred cCCCceeeCC
Confidence 8999999975
No 307
>PRK08321 naphthoate synthase; Validated
Probab=89.45 E-value=0.55 Score=58.41 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEe-cCCccee-------c----chHHHHHhhccccc----cccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIIL-------T----GFSALNKLLGREVY----SSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~-~~a~i~l-------t----Gp~al~~~lG~evy----~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+ . |...+.+.+|.... -+.+.+.+.+ ..
T Consensus 135 pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~ 213 (302)
T PRK08321 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEE-AH 213 (302)
T ss_pred CCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHH-HH
Confidence 46999999999999999999999999998 5765333 2 22335555665331 1222232222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.++++ .+..+.+..|..
T Consensus 214 ~~GLv~~vv~~-~~l~~~a~~~a~ 236 (302)
T PRK08321 214 DMGAVNAVVPH-AELETEALEWAR 236 (302)
T ss_pred HCCCceEeeCH-HHHHHHHHHHHH
Confidence 79999999974 445455555543
No 308
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=89.39 E-value=0.41 Score=58.17 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=56.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+. -...
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~-eA~~ 175 (259)
T TIGR01929 97 PKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAE-QALD 175 (259)
T ss_pred CCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHH-HHHH
Confidence 469999999999999999999999999998875433 2 2333555556432 1121222222 2356
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +....+.+|.
T Consensus 176 ~Glv~~vv~~~-~l~~~a~~~a 196 (259)
T TIGR01929 176 MGLVNTVVPLA-DLEKETVRWC 196 (259)
T ss_pred cCCcccccCHH-HHHHHHHHHH
Confidence 89999999754 4445555543
No 309
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=89.34 E-value=3.6 Score=47.18 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=58.4
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccce-----------------------EEEecCCCCCCHHH
Q 000092 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK-----------------------IIEEGPITVAPLET 325 (2267)
Q Consensus 269 ~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qK-----------------------iieeaPa~~l~~e~ 325 (2267)
....||||+-|. ++-+..|...=-+-+-+.+-| ||+|- ++..-|+. +-+.+
T Consensus 21 ~~~~IeEyviG~-~~~~~yFySpi~~~~Ellg~D----~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESL 94 (188)
T PF06973_consen 21 ENAIIEEYVIGV-PFYFHYFYSPIKDRVELLGID----RRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESL 94 (188)
T ss_dssp CCEEEEE---SE-EEEEEEEEETTTTEEEEEEEE----EEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGG
T ss_pred cccEEEEEecCc-eEEEeeecccccCceeeeeee----eEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhh
Confidence 478999999884 777776654433333333323 22221 12233554 55667
Q ss_pred HHHHHHHHHHHHHHc------CceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 326 VKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 326 ~~eL~~~A~rla~aL------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
.+++.+++.+++++. |..|++.+|.++++ +.++++.|+.+|+.++
T Consensus 95 L~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~-dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 95 LPKVFEMGERFVEASKELVPPGMIGPFCLQSIVTD-DLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT---EEEEEEEEE-T-TSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccceEEEEEcC-CceEEEEEEeccccCC
Confidence 778888877777765 78899999999984 7899999999999764
No 310
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.18 E-value=0.79 Score=61.88 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=59.5
Q ss_pred ceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccC
Q 000092 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQND 684 (2267)
Q Consensus 605 ~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~ 684 (2267)
.+.+.|.+||+...+.+.......-.. .........+...+.|+...+.+++ +-.+.-+..-+.++..
T Consensus 489 ~r~~~~~~ng~~~~v~v~d~~~~~~~~---------~~~~~~~~~V~Ap~~G~v~~~~V~~---Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 489 KRPFYLRVDGMPEEVVVEPLKEIVVGG---------RPRASAPGAVTSPMPGTVVKVKVKE---GDKVKAGDTVLVLEAM 556 (592)
T ss_pred cceEEEEecCceeeeeccCcccccccc---------cCCCCCCceEeCCCcEEEEEEEeCC---CCEECCCCEEEEEecc
Confidence 356677788888877775433211000 0001111223333455444443322 2222222222333333
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.-.+.|+||.+|+|.++++++||.|..||+|++||
T Consensus 557 Kme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 557 KMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred ccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 34567999999999999999999999999999986
No 311
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=89.16 E-value=0.52 Score=57.41 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=56.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++. +++. |...+...+|... .-+.+.+.+ +=...
T Consensus 100 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a-~eA~~ 178 (263)
T PRK07799 100 TKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITA-AEAKE 178 (263)
T ss_pred CCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH-HHHHH
Confidence 469999999999999999999999999999874 3332 2223445555322 112233333 22347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.+++++. ..+.+++|..
T Consensus 179 ~Glv~~vv~~~~-l~~~a~~~a~ 200 (263)
T PRK07799 179 IGLIGHVVPDGQ-ALDKALELAE 200 (263)
T ss_pred cCCccEecCcch-HHHHHHHHHH
Confidence 999999997653 3444555433
No 312
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=89.06 E-value=0.57 Score=56.96 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=57.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~e-A~~ 172 (259)
T PRK06494 94 DKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTARE-GLE 172 (259)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHH-HHH
Confidence 469999999999999999999999999999875333 2 2223444455332 11222333332 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.++++ .+..+.+++|..-
T Consensus 173 ~GLv~~vv~~-~~l~~~a~~~a~~ 195 (259)
T PRK06494 173 LGFVNEVVPA-GELLAAAERWADD 195 (259)
T ss_pred cCCCcEecCH-hHHHHHHHHHHHH
Confidence 8999999974 4445555555443
No 313
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=88.93 E-value=0.5 Score=57.58 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=56.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+ +-...
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a-~eA~~ 181 (266)
T PRK09245 103 EVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDA-ATALE 181 (266)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCH-HHHHH
Confidence 46999999999999999999999999999986533 32 2223444555432 112233332 33457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+++|.
T Consensus 182 ~Glv~~vv~~~-~l~~~a~~~a 202 (266)
T PRK09245 182 WGLVSRVVPAD-QLLPAARALA 202 (266)
T ss_pred cCCcceecCHH-HHHHHHHHHH
Confidence 99999999754 4444555543
No 314
>PLN02600 enoyl-CoA hydratase
Probab=88.92 E-value=0.62 Score=56.38 Aligned_cols=84 Identities=25% Similarity=0.255 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+...+.+.+ +..
T Consensus 88 ~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~e-A~~ 166 (251)
T PLN02600 88 SIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGARE-AAS 166 (251)
T ss_pred CCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999999875332 2 2233555555322 11233343333 346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +.....++|
T Consensus 167 ~Glv~~vv~~~-~~~~~a~~~ 186 (251)
T PLN02600 167 MGLVNYCVPAG-EAYEKALEL 186 (251)
T ss_pred cCCCcEeeChh-HHHHHHHHH
Confidence 89999999754 344444444
No 315
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=88.87 E-value=0.55 Score=56.82 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. +...+-+.+|... .-+...+++.+ ...
T Consensus 97 ~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~e-A~~ 175 (251)
T PRK06023 97 EKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEA-AQE 175 (251)
T ss_pred CCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHH-HHH
Confidence 469999999999999999999999999998875 3332 1123445555322 11223334333 456
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +....++++.
T Consensus 176 ~Glv~~vv~~~-~l~~~a~~~a 196 (251)
T PRK06023 176 AGLIWKIVDEE-AVEAETLKAA 196 (251)
T ss_pred cCCcceeeCHH-HHHHHHHHHH
Confidence 89999999754 3444444443
No 316
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=88.77 E-value=0.48 Score=57.92 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=55.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-..+|... .-+.+.+. ++=...
T Consensus 108 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~-a~eA~~ 186 (272)
T PRK06210 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFY-AEEALR 186 (272)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccC-HHHHHH
Confidence 47999999999999999999999999999987543 21 2222444444322 01112222 233457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.++++ .+..+.+.+|.
T Consensus 187 ~Glv~~vv~~-~~l~~~a~~~a 207 (272)
T PRK06210 187 LGLVNRVVPP-DELMERTLAYA 207 (272)
T ss_pred cCCcceecCH-HHHHHHHHHHH
Confidence 9999999975 44445555553
No 317
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=88.72 E-value=5.6 Score=48.80 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=63.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC--CCCchhhhh-----------hchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG--FSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G--f~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.++......++++.+++ ..+=+|+|.-.++ |..|..-.. .........++.++..+..|+|+.
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 112 (269)
T PRK06127 33 NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIAC 112 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67889999999999998875 4556777766542 766653110 011122345677888999999999
Q ss_pred EccCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+.. ++. .|+ ++|.++++++.
T Consensus 113 v~--G~a~GgG~~Lala----cD~--~ia~~~a~f~~ 141 (269)
T PRK06127 113 IR--GYCIGGGMGIALA----CDI--RIAAEDSRFGI 141 (269)
T ss_pred EC--CEEecHHHHHHHh----CCE--EEeeCCCEeeC
Confidence 97 766665544 333 477 78888877766
No 318
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=88.72 E-value=6.4 Score=48.00 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhhh-------------hchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF-------------EGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e~-------------~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.++......++++.++...+.+|+|.-.+ .|+.|..-.. .........++..+..+.+|+|+.
T Consensus 26 Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK08140 26 NSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAA 105 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999875567777776443 4666653110 001112234677888999999999
Q ss_pred EccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 106 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (262)
T PRK08140 106 VN--GVAAGAGANLALA----CDI--VLAARSASFIQ 134 (262)
T ss_pred EC--CeeehhHHHHHHh----CCE--EEecCCCEEec
Confidence 96 6666654 44444 477 78887777664
No 319
>PLN02600 enoyl-CoA hydratase
Probab=88.68 E-value=7.1 Score=47.38 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=63.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
-++.++-..-..++++.++. ..+-+|+|.-.. .|+.|..-. ..........++..+..+..|+|+.|-
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 47888999999999988765 467788886543 377665211 011122234566778889999999996
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. .++. .|+ ++|.++++++.
T Consensus 97 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 123 (251)
T PLN02600 97 --GAALGGGLELALS----CDL--RICGEEAVFGL 123 (251)
T ss_pred --CeecchhHHHHHh----CCE--EEeeCCCEEeC
Confidence 66666554 3444 477 78888887776
No 320
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=88.55 E-value=0.4 Score=58.25 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+...+|... .-+...+.+. -...
T Consensus 102 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~-eA~~ 180 (262)
T PRK07509 102 PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAE-EALE 180 (262)
T ss_pred CCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHH-HHHH
Confidence 46999999999999999999999999999997533 22 2233444555432 1122233332 2447
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.++++..+....+.+-|.
T Consensus 181 ~Glv~~vv~~~~~~a~~~a~~l~ 203 (262)
T PRK07509 181 LGLVTHVSDDPLAAALALAREIA 203 (262)
T ss_pred cCChhhhhchHHHHHHHHHHHHH
Confidence 99999998654444444333333
No 321
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=88.52 E-value=0.62 Score=56.59 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhccc----cccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~e----vy~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+...+|.. ..-+...+.+.+ ...
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~ 173 (258)
T PRK09076 95 RGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAAT-ALR 173 (258)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 369999999999999999999999999999876433 2 223355555542 111223333322 457
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+.++
T Consensus 174 ~Glv~~vv~~~-~l~~~a~~~ 193 (258)
T PRK09076 174 IGLVEEVVEKG-EAREAALAL 193 (258)
T ss_pred CCCCceecCch-hHHHHHHHH
Confidence 89999999754 434444444
No 322
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=88.37 E-value=5.6 Score=48.60 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh-------h---chHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-------E---GILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~-------~---gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.+........+++.++. ..+-+|+|.-.+ .|+.|..-.. . ........++..+..+..|+|+.|
T Consensus 30 Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 109 (262)
T PRK06144 30 NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAI 109 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57788888999999988875 456777776544 4887763110 0 111223456777888999999999
Q ss_pred ccCCcCCchhHhhhccccCCccceeecccccEEEeeC
Q 000092 2009 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2009 ~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
- |.+.||+..... ..|+ ++|.++++++.-+
T Consensus 110 ~--G~a~GgG~~lal---a~D~--~ia~~~a~f~~pe 139 (262)
T PRK06144 110 A--GACVGGGAAIAA---ACDL--RIATPSARFGFPI 139 (262)
T ss_pred C--CeeeehHHHHHH---hCCE--EEecCCCEeechh
Confidence 6 766665544332 2487 8888988887643
No 323
>PRK08788 enoyl-CoA hydratase; Validated
Probab=88.37 E-value=15 Score=45.59 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=57.0
Q ss_pred CccCHHHHHHHHHHHHHhcc------cCCcEEEEecCC--CCCCchhh-hh---------hchHHHHHHHHHHHh-----
Q 000092 1942 QVWFPDSATKTAQALMDFNR------EELPLFILANWR--GFSGGQRD-LF---------EGILQAGSTIVENLR----- 1998 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~------~~lPLv~l~d~~--Gf~~G~~~-e~---------~gilk~ga~iv~al~----- 1998 (2267)
-++.++......++++.+.+ ..+-+|+|.-.. .|+.|..- +. .....+...+.+.+.
T Consensus 38 Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (287)
T PRK08788 38 PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRG 117 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 47888889999999988764 456667776552 37766531 11 111122222232222
Q ss_pred -cCCCCEEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 1999 -TYKQPVFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 1999 -~~~vP~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.+.+|+|+.|- |-+.||+ -.++.+ |+ ++|.++++++.
T Consensus 118 ~~~pkPvIAaV~--G~a~GgG~~Lalac----D~--ria~~~a~f~~ 156 (287)
T PRK08788 118 FGAGAISIALVQ--GDALGGGFEAALSH----HT--IIAERGAKMGF 156 (287)
T ss_pred cCCCCCEEEEEC--CeeehHHHHHHHhC----CE--EEecCCCEeeC
Confidence 67899999996 6665544 444443 76 77888777665
No 324
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=88.29 E-value=0.55 Score=52.96 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=34.4
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
|.++...-...|+||..|+|+++++++|+.|..||+|++|+
T Consensus 115 ~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 115 CIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 34444444567999999999999999999999999999985
No 325
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=88.28 E-value=0.92 Score=52.01 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=67.7
Q ss_pred CCcchHHHHHHHHHHHHHHHcCC-CEEEEEcCCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceee
Q 000092 1619 GSFGPREDAFFLAVTDLACAKKL-PLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIA 1697 (2267)
Q Consensus 1619 GS~g~~~~~k~~ra~elA~~~~i-P~I~l~~ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~ 1697 (2267)
|...+.....+.++.+.|.+.+. +++...+|.|+.+.-...+. +.+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~~~I~---------------------------~~i------ 54 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAAGNIV---------------------------QRI------ 54 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHHHHHH---------------------------HHH------
Confidence 67778888899999999998876 46666788887664221111 111
Q ss_pred eccccccCceeeEEEeecccccCcccccccccccccccccccccCceEEEEEc---CcccchhhhhhccCCeEEEecCCc
Q 000092 1698 HEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVT---GRTVGIGAYLARLGMRCIQRLDQP 1774 (2267)
Q Consensus 1698 ~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~iptis~vt---g~~~G~gAyl~~lgd~~I~~~~a~ 1774 (2267)
+ +..+|++++|. |.+...|++++.-||.++|.+++.
T Consensus 55 -----------------------------~------------~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~ 93 (172)
T cd07015 55 -----------------------------Q------------QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTS 93 (172)
T ss_pred -----------------------------H------------hcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCE
Confidence 0 01259999999 999999999999999999999999
Q ss_pred ceecchH
Q 000092 1775 IILTGFS 1781 (2267)
Q Consensus 1775 i~ltGp~ 1781 (2267)
++..||-
T Consensus 94 iG~~~pi 100 (172)
T cd07015 94 IGACRPI 100 (172)
T ss_pred EEEcccc
Confidence 9999983
No 326
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=88.24 E-value=0.75 Score=49.97 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=36.2
Q ss_pred CCceecCCCceeEEEEccCCCE-EcC--CCc-EEE--EEccccceeeecCCCcEE-EEeeCCCCccCCCCEEEEEecC
Q 000092 687 PSKLVAETPCKLLRYLVSDGSH-IDA--DTP-YAE--VEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~-V~~--G~~-l~~--iEaMKM~~~l~ap~~G~v-~~i~~~G~~v~~G~~La~l~~~ 757 (2267)
.+.+.||..|+|..+.-..-.. ++. |-. +.- +.+.|| .|.= +..+++||.|.+||+|++++.+
T Consensus 35 ~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l--------~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 35 DGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeec--------CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 4688999999887763321111 111 111 111 122222 2332 3348999999999999999754
No 327
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=88.22 E-value=6.1 Score=48.05 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhhhh-h------c------hHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDLF-E------G------ILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~e~-~------g------ilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.++-.....++++.++. ..+-+|+|.-.++ |+.|..-.. . + ..+....++.++..+..|+|+
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 24 NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 57889999999999998865 4556777755443 666653110 0 0 112234566788899999999
Q ss_pred EEccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 104 av~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 133 (255)
T PRK07260 104 CVD--GAVAGAAANMAVA----ADF--CIASTKTKFIQ 133 (255)
T ss_pred Eec--CeeehhhHHHHHh----CCE--EEEeCCCEEec
Confidence 997 66655 5544554 477 88888888775
No 328
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=88.21 E-value=0.74 Score=55.91 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+ +-...
T Consensus 92 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a-~eA~~ 170 (255)
T PRK08150 92 RVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDA-QEGER 170 (255)
T ss_pred CCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH-HHHHH
Confidence 369999999999999999999999999999875332 1 2223444455321 112233322 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+++|..-
T Consensus 171 ~Glv~~vv~~~-~l~~~a~~~a~~ 193 (255)
T PRK08150 171 LGLAQYLVPAG-EALDKAMELARR 193 (255)
T ss_pred cCCccEeeCch-HHHHHHHHHHHH
Confidence 99999999854 455555555443
No 329
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=88.19 E-value=0.66 Score=56.97 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=57.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecc-----hHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTG-----FSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltG-----p~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++.. ...+-+.+|... .-+.+.+.+.+ ..
T Consensus 113 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~ 191 (277)
T PRK08258 113 PQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEE-GE 191 (277)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 469999999999999999999999999999864 44431 223555555422 11222222222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
.-|++|.++++ .+..+.+.+|..-
T Consensus 192 ~~Glv~~vv~~-~~l~~~a~~~a~~ 215 (277)
T PRK08258 192 RWGFFNRLVEP-EELLAEAQALARR 215 (277)
T ss_pred HcCCCcEecCH-HHHHHHHHHHHHH
Confidence 79999999974 4555666666443
No 330
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=88.18 E-value=0.51 Score=57.23 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=57.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |..-+.+.+|... .-+...+.+ +-...
T Consensus 96 ~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a-~eA~~ 174 (259)
T PRK06688 96 PKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSA-EEALR 174 (259)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCH-HHHHH
Confidence 469999999999999999999999999998865433 2 2223444555322 111122222 22346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.++++ .+..+.+.+|..-+
T Consensus 175 ~Glv~~v~~~-~~l~~~a~~~a~~i 198 (259)
T PRK06688 175 IGLVNRVVPA-AELDAEADAQAAKL 198 (259)
T ss_pred cCCcceecCH-HHHHHHHHHHHHHH
Confidence 8999999974 44556666665443
No 331
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=88.17 E-value=0.76 Score=43.34 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=28.9
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
..|+||..|.|.++.+++|+.|++|++++.|
T Consensus 37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999999999875
No 332
>PLN02888 enoyl-CoA hydratase
Probab=88.13 E-value=0.51 Score=57.62 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=57.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+++ . |...+.+.+|.... -+.+.+. ++=...
T Consensus 99 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~-a~eA~~ 177 (265)
T PLN02888 99 RKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLT-AETAER 177 (265)
T ss_pred CCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccC-HHHHHH
Confidence 469999999999999999999999999999875433 1 22335555565331 1112222 222347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+.+|..-
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~~ 200 (265)
T PLN02888 178 WGLVNHVVEES-ELLKKAREVAEA 200 (265)
T ss_pred cCCccEeeChH-HHHHHHHHHHHH
Confidence 99999999754 455555555443
No 333
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=88.08 E-value=0.58 Score=56.96 Aligned_cols=86 Identities=16% Similarity=0.044 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 172 (258)
T PRK06190 94 RKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAAD-ALR 172 (258)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 46999999999999999999999999999987543 21 2223444555432 12223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.+++++ +..+.+++|..
T Consensus 173 ~GLv~~vv~~~-~l~~~a~~~a~ 194 (258)
T PRK06190 173 AGLVTEVVPHD-ELLPRARRLAA 194 (258)
T ss_pred cCCCeEecCHh-HHHHHHHHHHH
Confidence 99999999743 44455555543
No 334
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=88.01 E-value=0.98 Score=48.46 Aligned_cols=106 Identities=25% Similarity=0.295 Sum_probs=61.2
Q ss_pred cEEEEEC----chHHHHHHHHHHHHcCCcccccccceeEEE-EEeccCCCCCChhhhhccEEE-EccCCCCCCCccCHHH
Q 000092 49 HSILIAN----NGMAAVKFIRSIRTWAYETFGTEKAILLVA-MATPEDMRINAEHIRIADQFV-EVPGGTNNNNYANVQL 122 (2267)
Q Consensus 49 kkVLIan----~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~-~~t~~D~~~~a~~vr~ADe~v-~vp~~~~~~~Y~dvd~ 122 (2267)
|+|.|+| .+-.+.++++.+++.||+++..+..-..+. .-++.+.... -.-.|-++ .+|. .....
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~---p~~iDlavv~~~~-------~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEI---PEPIDLAVVCVPP-------DKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGC---SST-SEEEE-S-H-------HHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCC---CCCCCEEEEEcCH-------HHHHH
Confidence 5788998 356799999999999998874333222221 1222222110 01233332 3322 23667
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHH
Q 000092 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATS 166 (2267)
Q Consensus 123 Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~ea 166 (2267)
+++-|.+.++.+||--.| .++.++.+.++++|+.++||.---
T Consensus 71 ~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 71 IVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcce
Confidence 788888889999997766 566778899999999999997543
No 335
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=87.99 E-value=0.51 Score=57.29 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=54.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-..+|... .-+.+.+.+ +=...
T Consensus 94 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a-~eA~~ 172 (257)
T PRK05862 94 RKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDA-AEAER 172 (257)
T ss_pred CCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCH-HHHHH
Confidence 46999999999999999999999999999886533 22 2233444555422 111122222 22347
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+++|.
T Consensus 173 ~Glv~~vv~~~-~l~~~a~~~a 193 (257)
T PRK05862 173 AGLVSRVVPAD-KLLDEALAAA 193 (257)
T ss_pred cCCCCEeeCHh-HHHHHHHHHH
Confidence 89999999753 3444444443
No 336
>PRK08139 enoyl-CoA hydratase; Validated
Probab=87.94 E-value=0.95 Score=55.33 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=54.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec---chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt---Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++-.||++|+.+++. +++. |...+-+.+|... .-+...+. ++=...-
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~-a~eA~~~ 182 (266)
T PRK08139 104 PQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFID-AATAREW 182 (266)
T ss_pred CCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccC-HHHHHHc
Confidence 369999999999999999999999999999865 3332 1112333444322 11222232 2334579
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000092 1808 GVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~L 1828 (2267)
|++|.+++++ +..+.+.+|.
T Consensus 183 GLv~~vv~~~-~l~~~a~~~a 202 (266)
T PRK08139 183 GLVNRVVPAD-ALDAAVARLA 202 (266)
T ss_pred CCccEeeChh-HHHHHHHHHH
Confidence 9999999753 4444444443
No 337
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=87.82 E-value=0.82 Score=55.72 Aligned_cols=85 Identities=20% Similarity=0.074 Sum_probs=55.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch------------HHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF------------SALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp------------~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+.-. .-+-..+|... .-+...+.+. -..
T Consensus 102 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~-eA~ 180 (262)
T PRK06144 102 RVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAE-EAL 180 (262)
T ss_pred CCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHH-HHH
Confidence 469999999999999999999999999999976554211 22344455332 1122233322 234
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.-|++|.++++ .+..+.+.+|.
T Consensus 181 ~~Glv~~vv~~-~~l~~~a~~~a 202 (262)
T PRK06144 181 AAGLVNEVVED-AALDARADALA 202 (262)
T ss_pred HcCCcCeecCH-HHHHHHHHHHH
Confidence 78999999975 44444444443
No 338
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=87.81 E-value=0.58 Score=56.75 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++-.||++|+.+++.+.+ . |...+-+.+|... .-+...+.+ +-...
T Consensus 93 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a-~eA~~ 171 (254)
T PRK08259 93 SKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDA-DEALA 171 (254)
T ss_pred CCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCH-HHHHH
Confidence 469999999999999999999999999999875432 1 2223444555432 111122222 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+++|.
T Consensus 172 ~Glv~~vv~~~-~l~~~a~~~a 192 (254)
T PRK08259 172 IGLANRVVPKG-QARAAAEELA 192 (254)
T ss_pred cCCCCEeeChh-HHHHHHHHHH
Confidence 99999999754 4455555554
No 339
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=87.81 E-value=0.91 Score=55.52 Aligned_cols=86 Identities=22% Similarity=0.184 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 184 (268)
T PRK07327 106 DKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEE-AER 184 (268)
T ss_pred CCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 4699999999999999999999999999998754 333 1122344444322 11122232222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+++|..
T Consensus 185 ~Glv~~vv~~-~~l~~~a~~~a~ 206 (268)
T PRK07327 185 IGLVSLAVDD-DELLPKALEVAE 206 (268)
T ss_pred cCCcceecCH-HHHHHHHHHHHH
Confidence 8999999974 444555555543
No 340
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=87.69 E-value=6.3 Score=47.99 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=63.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh--h-------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL--F-------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e--~-------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
-++.++......++++.++. ..+-+|+|.-.+ .|+.|..-. . ....+....++..+..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 46788999999999998875 567777776654 277765211 0 11223344567788999999999996
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. +++. .|+ ++|.++++++.
T Consensus 104 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 130 (258)
T PRK09076 104 --GYAMGGGLECALA----CDI--RIAEEQAQMAL 130 (258)
T ss_pred --CEEecHHHHHHHh----CCE--EEecCCCEeeC
Confidence 66666544 3443 476 77777777665
No 341
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=87.69 E-value=0.54 Score=57.19 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=55.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcc---ccccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGR---EVYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~---evy~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++-.||++|+.+++.+.+ . |...+.++.|. +..-+...+. ++-+...
T Consensus 101 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~l~l~g~~~~-a~eA~~~ 179 (260)
T PRK07827 101 PKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFG-AAEAARI 179 (260)
T ss_pred CCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHHHHHhCCccC-HHHHHHc
Confidence 369999999999999999999999999998875333 1 12223332221 1111222232 2334568
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|++|.++++..+.+..+.+-+.-.|
T Consensus 180 Glv~~v~~~l~~~a~~~a~~la~~~ 204 (260)
T PRK07827 180 GLVTAAADDVDAAVAALLADLRRGS 204 (260)
T ss_pred CCcccchHHHHHHHHHHHHHHHhCC
Confidence 9999988654444444444444333
No 342
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=87.57 E-value=0.77 Score=55.85 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 97 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 175 (260)
T PRK07657 97 PQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQE-AKE 175 (260)
T ss_pred CCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 4799999999999999999999999999988653 332 1223555555322 11222233333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+++|..
T Consensus 176 ~Glv~~vv~~-~~l~~~a~~~a~ 197 (260)
T PRK07657 176 IGLVEFVVPA-HLLEEKAIEIAE 197 (260)
T ss_pred cCCCCeecCH-HHHHHHHHHHHH
Confidence 8999999975 445555555543
No 343
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=87.53 E-value=0.76 Score=55.81 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec---chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt---Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...-
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~~ 178 (256)
T PRK06143 100 PVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQ-ALAW 178 (256)
T ss_pred CCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHH-HHHC
Confidence 47999999999999999999999999999987533 21 1223444555422 11222233222 3478
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000092 1808 GVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
|++|.++++ .+....+.+|..
T Consensus 179 Glv~~vv~~-~~l~~~a~~~a~ 199 (256)
T PRK06143 179 GLVDRVVPL-AELDAAVERLAA 199 (256)
T ss_pred CCcCeecCH-HHHHHHHHHHHH
Confidence 999999974 444445555443
No 344
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=87.51 E-value=0.69 Score=52.19 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=34.7
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
|.++...-...|.||..|+|.+++|++||.|+.||+|++||
T Consensus 116 ~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 116 CIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 44444444567999999999999999999999999999985
No 345
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=87.48 E-value=0.78 Score=55.83 Aligned_cols=87 Identities=16% Similarity=0.123 Sum_probs=57.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 172 (261)
T PRK03580 94 DKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEE-ALR 172 (261)
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 46999999999999999999999999999886532 22 1223444455432 11222333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++. .+..+.+.+|..-
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~~ 195 (261)
T PRK03580 173 WGIVNRVVPQ-AELMDRARELAQQ 195 (261)
T ss_pred cCCCcEecCH-hHHHHHHHHHHHH
Confidence 8999999974 4555566665443
No 346
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=87.46 E-value=0.7 Score=56.73 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=56.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----c-hHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----G-FSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----G-p~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++. +++. | ...+-+.+|... .-+.+.+.+ +=..
T Consensus 109 ~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a-~eA~ 187 (276)
T PRK05864 109 HQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDA-EEAE 187 (276)
T ss_pred CCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCH-HHHH
Confidence 469999999999999999999999999998864 2333 1 123555556432 112233322 2234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.+++++ +..+.+.+|..
T Consensus 188 ~~Glv~~vv~~~-~l~~~a~~~a~ 210 (276)
T PRK05864 188 RIGLVSRQVPDE-QLLDTCYAIAA 210 (276)
T ss_pred HcCCcceeeCHH-HHHHHHHHHHH
Confidence 789999999754 44455555533
No 347
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=87.41 E-value=23 Score=45.13 Aligned_cols=94 Identities=13% Similarity=0.227 Sum_probs=60.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh--hh-----------chHHHHHHHHHHHhcCCCCEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL--FE-----------GILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e--~~-----------gilk~ga~iv~al~~~~vP~i 2005 (2267)
-++.+.-.....++++.+++ ..+-+|+|.-.+ .|+.|..-. .. ...+....++..+..++.|+|
T Consensus 25 Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (342)
T PRK05617 25 NALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYI 104 (342)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57888999999999988875 456677777654 376665311 00 111122346677889999999
Q ss_pred EEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |.+.||+ -+++. .|+ ++|.++|+++.
T Consensus 105 AaVn--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 135 (342)
T PRK05617 105 ALMD--GIVMGGGVGISAH----GSH--RIVTERTKMAM 135 (342)
T ss_pred EEEc--CEEEccHhHHhhh----CCE--EEEcCCCEeeC
Confidence 9996 6666654 44443 366 66666665554
No 348
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=87.31 E-value=8.6 Score=46.85 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=63.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhhhh-----------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.+.......++++.+++ -.+-+|+|.-.++ |+.|..-.. .........++.++..+..|+|+.|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57889999999999998865 4566777765432 665532110 0111223456778889999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeecccccEEEeeC
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
- |-+.|| .-.++. .|+ ++|.++++++.-+
T Consensus 105 ~--G~a~GgG~~lala----cD~--~ia~~~a~f~~pe 134 (257)
T PRK06495 105 N--GPALGAGLGLVAS----CDI--IVASENAVFGLPE 134 (257)
T ss_pred C--CeeehhHHHHHHh----CCE--EEecCCCEeeChh
Confidence 7 666554 444444 477 7888888777643
No 349
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=87.26 E-value=0.7 Score=56.12 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=55.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+...+++. -...
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~-eA~~ 172 (256)
T TIGR03210 94 PKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQ-EALA 172 (256)
T ss_pred CCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHH-HHHH
Confidence 369999999999999999999999999999865433 2 2223444555432 1111222222 2346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+.++.
T Consensus 173 ~Glv~~vv~~~-~l~~~a~~~a 193 (256)
T TIGR03210 173 MGLVNAVVPHD-QLDAEVQKWC 193 (256)
T ss_pred cCCceeeeCHH-HHHHHHHHHH
Confidence 89999999754 4444444443
No 350
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=87.25 E-value=8 Score=47.17 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh---------hch---HHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------EGI---LQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~---------~gi---lk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.+.......++++.++. ..+-+|+|.-.+ .|+.|..-.. ... .+....++.++..+..|+|+.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 57889999999999998865 566777776544 3776643110 001 122345677888999999999
Q ss_pred EccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 106 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (262)
T PRK05995 106 VH--GDAYAGGMGLVAA----CDI--AVAADHAVFCL 134 (262)
T ss_pred EC--CEEEhhHHHHHHh----CCE--EEeeCCCEEeC
Confidence 96 6666644 44444 476 77777777666
No 351
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=87.13 E-value=0.6 Score=56.74 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=55.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |...+...+|... .-+...+.+.+ ...
T Consensus 100 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 178 (260)
T PRK05980 100 PKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAER-ALE 178 (260)
T ss_pred CCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHH-HHH
Confidence 4699999999999999999999999999988753 222 2223444555432 11222333322 456
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+.+|.
T Consensus 179 ~Glv~~vv~~~-~l~~~a~~~a 199 (260)
T PRK05980 179 IGLVNAVVPHE-ELLPAARALA 199 (260)
T ss_pred cCCCCcccCHH-HHHHHHHHHH
Confidence 89999999754 4455555544
No 352
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=87.12 E-value=0.64 Score=57.83 Aligned_cols=86 Identities=20% Similarity=0.077 Sum_probs=54.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----c--h-HHHHHhhcccc----ccccccCCccccccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----G--F-SALNKLLGREV----YSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----G--p-~al~~~lG~ev----y~s~~~lGG~~i~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+- | + ..+-..+|... .-+...+.+.+ ...-|+
T Consensus 127 ~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~~~~~~vG~~~A~~llltG~~i~a~e-A~~~GL 205 (302)
T PRK08272 127 HKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQRAKRLLFTGDCITGAQ-AAEWGL 205 (302)
T ss_pred CCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHHHHHHHhhHHHHHHHHHcCCccCHHH-HHHcCC
Confidence 4799999999999999999999999999998754321 1 1 11222233221 11222233332 457999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000092 1810 VHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
+|.++++ .+....+.++..
T Consensus 206 v~~vv~~-~~l~~~a~~la~ 224 (302)
T PRK08272 206 AVEAVPP-EELDERTERLVE 224 (302)
T ss_pred CceecCH-HHHHHHHHHHHH
Confidence 9999974 444445555443
No 353
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=87.07 E-value=0.7 Score=56.04 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=54.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+ +=...
T Consensus 91 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a-~eA~~ 169 (254)
T PRK08252 91 RKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTA-ERAHE 169 (254)
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCH-HHHHH
Confidence 47999999999999999999999999999987533 32 1222334444322 112223333 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+.++.
T Consensus 170 ~Glv~~vv~~~-~l~~~a~~~a 190 (254)
T PRK08252 170 LGLVNRLTEPG-QALDAALELA 190 (254)
T ss_pred cCCcceecCcc-hHHHHHHHHH
Confidence 89999999754 3444444443
No 354
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=87.03 E-value=0.7 Score=57.40 Aligned_cols=86 Identities=15% Similarity=-0.048 Sum_probs=55.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce--------ecchHHHHHhhccc----cccccccCCccccccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII--------LTGFSALNKLLGRE----VYSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~--------ltGp~al~~~lG~e----vy~s~~~lGG~~i~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +......-..+|.. ..-+.+.+.+.+ ...-|+
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~~~~vG~~~A~~llltg~~i~A~e-A~~~GL 190 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMWLYRLSLAKVKWHSLTGRPLTGVQ-AAEAEL 190 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchhHHHHHhhHHHHHHHHHcCCccCHHH-HHHcCC
Confidence 47999999999999999999999999999986533 22111111123332 111223333333 457999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000092 1810 VHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
++.++++ .+....+.+|..
T Consensus 191 V~~vv~~-~~l~~~a~~~a~ 209 (298)
T PRK12478 191 INEAVPF-ERLEARVAEVAT 209 (298)
T ss_pred cceecCH-HHHHHHHHHHHH
Confidence 9999974 445555555544
No 355
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=86.98 E-value=6 Score=48.08 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-hh---------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF---------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e~---------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
.++.++......++++.+.+ ..+-+|+|.-.+ .|+.|..= +. .........++.++..+.+|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57889999999999988864 567777776543 26666531 10 01223345677889999999999997
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. +++. .|+ ++|.++++++.
T Consensus 103 --G~a~GgG~~lala----cD~--ria~~~a~f~~ 129 (257)
T PRK07658 103 --GAALGGGLELAMS----CHI--RFATESAKLGL 129 (257)
T ss_pred --CeeeeHHHHHHHh----CCE--EEecCCCcccC
Confidence 66666543 3443 366 67776666554
No 356
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=86.97 E-value=0.75 Score=55.67 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecch-HHHHHhhcccc----ccccccCCccccccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGF-SALNKLLGREV----YSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltGp-~al~~~lG~ev----y~s~~~lGG~~i~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++. +++.|. ..+...+|... .-+...+.+. =...-|+
T Consensus 94 ~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~-eA~~~Gl 172 (249)
T PRK07938 94 AVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAATITAA-ELHHFGS 172 (249)
T ss_pred CCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCcCCHH-HHHHCCC
Confidence 369999999999999999999999999998864 333332 22334444322 1122233222 2347999
Q ss_pred eEEEecCcHHHHHHHHHHH
Q 000092 1810 VHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~L 1828 (2267)
+|.++++ .+..+.+.+|.
T Consensus 173 v~~vv~~-~~l~~~a~~~a 190 (249)
T PRK07938 173 VEEVVPR-DQLDEAALEVA 190 (249)
T ss_pred ccEEeCH-HHHHHHHHHHH
Confidence 9999974 44455555554
No 357
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=86.82 E-value=6.2 Score=48.39 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-----------hhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.+.-.....++++.++. ..+-+|+|.-.+ .|+.|..-. ..........++..+..+..|+|+.|
T Consensus 34 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 113 (268)
T PRK07327 34 NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI 113 (268)
T ss_pred CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57888889999999988865 456677775543 366665311 01112233456777888999999999
Q ss_pred ccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.||++ +++. .|+ ++|.++++++.
T Consensus 114 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 141 (268)
T PRK07327 114 H--GPAVGAGLVAALL----ADI--SIAAKDARIID 141 (268)
T ss_pred c--CeeeehhhHHHHh----CCE--EEecCCCEEeC
Confidence 6 66666544 4444 366 77777777664
No 358
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=86.77 E-value=9.1 Score=46.65 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=61.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h-----------hhchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L-----------FEGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e-----------~~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
.++.+.-.....++++.+++ ..+-+|+|.-.+ .|+.|..= + ..........++..+..+.+|+|+.
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAa 104 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAA 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57888999999999998875 456667775433 36666521 0 0111233455677888999999999
Q ss_pred EccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |.+.| |...++.+ |+ ++|.++|+++.
T Consensus 105 v~--G~a~GgG~~lala~----D~--~ia~~~a~f~~ 133 (260)
T PRK07511 105 VE--GAAAGAGFSLALAC----DL--LVAARDAKFVM 133 (260)
T ss_pred EC--CeeehHHHHHHHhC----CE--EEeeCCCEEec
Confidence 97 55555 55445443 66 77777766665
No 359
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=86.74 E-value=0.78 Score=55.74 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |..-+.+.+|... .-+...+.+ +=...
T Consensus 97 ~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a-~eA~~ 175 (260)
T PRK05809 97 DKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINA-EEALR 175 (260)
T ss_pred CCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCH-HHHHH
Confidence 3699999999999999999999999999988653 332 1223445556322 112223322 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.++++ .+..+.+.++.
T Consensus 176 ~Glv~~vv~~-~~l~~~a~~~a 196 (260)
T PRK05809 176 IGLVNKVVEP-EKLMEEAKALA 196 (260)
T ss_pred cCCCCcccCh-HHHHHHHHHHH
Confidence 8999999974 34444444443
No 360
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=86.74 E-value=8.3 Score=47.03 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=63.8
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhh----------hhchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL----------FEGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e----------~~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.+.......++++.+....+-+|+|.-.+ .|+.|..-. ..........++.++..+.+|+|+.|-
T Consensus 28 Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~- 106 (260)
T PRK07659 28 NALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIH- 106 (260)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEec-
Confidence 57889999999999998855566777776544 377764211 111223345567778889999999996
Q ss_pred CCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+..... ..|+ ++|.++++++.
T Consensus 107 -G~a~GgG~~lal---acD~--ria~~~a~f~~ 133 (260)
T PRK07659 107 -GPAAGLGLSIAL---TADY--VIADISAKLAM 133 (260)
T ss_pred -CceecHHHHHHH---hCCE--EEEcCCCEEcC
Confidence 666665543332 2477 88888877665
No 361
>PRK08788 enoyl-CoA hydratase; Validated
Probab=86.71 E-value=0.92 Score=56.09 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=57.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+...+.+.+ ...
T Consensus 121 pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~e-A~~ 199 (287)
T PRK08788 121 GAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEE-LHD 199 (287)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHH
Confidence 46999999999999999999999999999987533 22 1223444555432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+++|..-
T Consensus 200 ~GLV~~vv~~~-el~~~a~~~a~~ 222 (287)
T PRK08788 200 MGLVDVLVEDG-QGEAAVRTFIRK 222 (287)
T ss_pred CCCCcEecCch-HHHHHHHHHHHH
Confidence 89999999754 444555555443
No 362
>PRK05869 enoyl-CoA hydratase; Validated
Probab=86.69 E-value=7.7 Score=46.31 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=60.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchh-hhh--------hchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR-DLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~-~e~--------~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
-++.++....+.++++.++. -++-+|+|.-.++ |+.|.. .+. ....+....++.++..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~- 107 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAIT- 107 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc-
Confidence 47788889999999988765 6777777765432 665543 110 11122334677788999999999997
Q ss_pred CCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.| |.-+++.+ |+ ++|.++++++.
T Consensus 108 -G~a~GgG~~lalac----D~--ria~~~a~f~~ 134 (222)
T PRK05869 108 -GYALGAGLTLALAA----DW--RVSGDNVKFGA 134 (222)
T ss_pred -CEeecHHHHHHHhC----CE--EEecCCCEEcC
Confidence 66655 44444444 65 66666666554
No 363
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=86.68 E-value=24 Score=45.94 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hh----hc-------hHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LF----EG-------ILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~----~g-------ilk~ga~iv~al~~~~vP~i~ 2006 (2267)
-++..+......++++.++. ..+-+|+|.-.+ .|..|..- .. .+ ..+....+...+..+..|+|+
T Consensus 64 NALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA 143 (407)
T PLN02851 64 NALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVA 143 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57899999999999998765 577777775433 36655421 11 00 111223455567789999999
Q ss_pred EEccCCcCCchh-Hhhhcccc---CCccceeecccccEEEeeCccch
Q 000092 2007 YIPMMAELRGGA-WVVVDSRI---NSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~---n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
.|- |-+.||+ .+++.+.+ ..+. .|+.|...+|+...-|+
T Consensus 144 ~v~--G~amGGG~gLal~~D~rVate~a--~famPE~~iGl~PdvG~ 186 (407)
T PLN02851 144 IMD--GITMGCGAGISIPGMFRVVTDKT--VFAHPEVQMGFHPDAGA 186 (407)
T ss_pred EEc--CEEeeHHHHHHHhCCEEEEeCCc--eEecchhccCCCCCccH
Confidence 996 6666654 44444321 1222 45556666666543333
No 364
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=86.57 E-value=25 Score=42.60 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhh----hhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL----FEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e----~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G 2016 (2267)
..++++......++++.++...+-+|+|.-.+ .|+.|..-. ..........++..+..+..|+|+.|- |.+.|
T Consensus 22 Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~--G~a~G 99 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAIN--GPAIG 99 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEec--Ccccc
Confidence 57889999999999988876567677775433 366665311 112223345677788899999999996 66666
Q ss_pred hh-HhhhccccCCccceeecccccEEEe
Q 000092 2017 GA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2017 Ga-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+ ..++. .|+ ++|.++++++.
T Consensus 100 gG~~lal~----cD~--~ia~~~a~f~~ 121 (243)
T PRK07854 100 AGLQLAMA----CDL--RVVAPEAYFQF 121 (243)
T ss_pred cHHHHHHh----CCE--EEEcCCCEEec
Confidence 54 44444 477 77878777765
No 365
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=86.57 E-value=0.72 Score=57.22 Aligned_cols=84 Identities=18% Similarity=0.109 Sum_probs=53.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|.... -+.+.+.+. -...
T Consensus 113 pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~-eA~~ 191 (296)
T PRK08260 113 LKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQ-EALD 191 (296)
T ss_pred CCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHH-HHHH
Confidence 479999999999999999999999999999875432 1 12234444454221 011122222 2347
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +....+.+|
T Consensus 192 ~GLv~~vv~~~-~l~~~a~~~ 211 (296)
T PRK08260 192 GGLVRSVHPPD-ELLPAARAL 211 (296)
T ss_pred CCCceeecCHH-HHHHHHHHH
Confidence 99999999744 444444444
No 366
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=86.48 E-value=7.3 Score=47.46 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..++.++......++++.++. ..+-+|+|.-.+ .|+.|..=. .....+....++..+..+.+|+|+.|
T Consensus 28 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 107 (256)
T PRK06143 28 LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI 107 (256)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 357889999999999998864 566677776654 488775311 01112233456778889999999999
Q ss_pred ccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 108 ~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 135 (256)
T PRK06143 108 P--GWCLGGGLELAAA----CDL--RIAAHDAQFGM 135 (256)
T ss_pred C--CEEeehhHHHHHh----CCE--EEecCCCEEeC
Confidence 6 6666654 44444 366 66666666655
No 367
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=86.40 E-value=0.88 Score=56.26 Aligned_cols=88 Identities=19% Similarity=0.094 Sum_probs=57.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecchH--HHHHhhcccc----ccccccCCccccccccC
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS--ALNKLLGREV----YSSHMQLGGPKIMATNG 1808 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltGp~--al~~~lG~ev----y~s~~~lGG~~i~~~nG 1808 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++.|.. .+-..+|... .-+.+.+.+ +-...-|
T Consensus 118 pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~llltG~~i~A-~eA~~~G 196 (288)
T PRK08290 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFTGDRLTA-DEAHRLG 196 (288)
T ss_pred CCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHhhHHHHHHHHHcCCCCCH-HHHHHCC
Confidence 469999999999999999999999999998864 5554321 1233445322 112222222 2245789
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000092 1809 VVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1809 v~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
++|.++++ .+..+.+++|..-+
T Consensus 197 LV~~vv~~-~~l~~~a~~~a~~l 218 (288)
T PRK08290 197 MVNRVVPR-DELEAETLELARRI 218 (288)
T ss_pred CccEeeCH-HHHHHHHHHHHHHH
Confidence 99999975 45556666665444
No 368
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=86.33 E-value=0.9 Score=55.10 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |..-+-..+|... .-+...+.+.+ ...
T Consensus 94 ~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 172 (257)
T PRK07658 94 SKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAE-ALK 172 (257)
T ss_pred CCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 4699999999999999999999999999988653 332 1222444455432 11223333332 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.+++. .+..+.++++..
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~ 194 (257)
T PRK07658 173 WGLVNGVFPE-ETLLDDAKKLAK 194 (257)
T ss_pred cCCcCeecCh-hHHHHHHHHHHH
Confidence 9999999974 444445555443
No 369
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=86.30 E-value=1.5 Score=59.19 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=59.9
Q ss_pred ceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEE------EEEecCCceEEEeCCceEEEEeeecccceEEEEcCce
Q 000092 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAE------IHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2267)
Q Consensus 605 ~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~------v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t 678 (2267)
...+.+.+||+.|.|++...+... .+........ ......+.+..-+.|....+.+++ +-.+..+..-
T Consensus 472 ~~~~~~~vnG~~~~V~v~d~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~---Gd~V~~G~~l 545 (582)
T TIGR01108 472 SGSYTVEVEGKAFVVKVSPGGDVS---QITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSE---GQTVAEGEVL 545 (582)
T ss_pred ceEEEEEECCEEEEEEEcCCcccc---ccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCC---CCEECCCCEE
Confidence 456888899999999987544221 1110000000 000112233333455544444432 1222223333
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPY 715 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l 715 (2267)
+.++...-...|.||.+|+|.+++|++||.|+.||+|
T Consensus 546 ~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 546 LILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 3444444567899999999999999999999999975
No 370
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=86.28 E-value=9 Score=46.48 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=62.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-------hch---HHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------EGI---LQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-------~gi---lk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.++. .++-+|+|.-.+ .|+.|..-.. ... .+....++..+..+++|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57889999999999998865 456667776533 4776654111 011 12234567788899999999997
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -+++. .|+ ++|.++++++.
T Consensus 103 --G~a~GgG~~Lal~----cD~--ria~~~a~f~~ 129 (249)
T PRK07938 103 --GFCLGGGIGLVGN----ADV--IVASDDATFGL 129 (249)
T ss_pred --CEEeehHHHHHHh----CCE--EEEeCCCEeeC
Confidence 6666654 44444 376 77777777766
No 371
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=85.95 E-value=0.88 Score=55.81 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|.-++..||++|+.+++.+.+. |...+-..+|... .-+...+.+.+ ...
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~e-A~~ 185 (273)
T PRK07396 107 PKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQE-ALD 185 (273)
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999764442 1223444455432 11222222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.++++ .+..+.+.+|.
T Consensus 186 ~GLv~~vv~~-~~l~~~a~~~a 206 (273)
T PRK07396 186 MGLVNTVVPL-ADLEKETVRWC 206 (273)
T ss_pred cCCcCeecCH-HHHHHHHHHHH
Confidence 8999999974 44545555543
No 372
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=85.94 E-value=8.5 Score=46.91 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=63.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC--CCCchhh-h--------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG--FSGGQRD-L--------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G--f~~G~~~-e--------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
-++..+-.....++++.+.+ ..+-+|+|.-.++ |+.|..- + ..........++.++..+..|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 26 NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57888999999999988765 5677888877664 7777531 1 011222345677888899999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -+++. .|+ ++|.++++++.
T Consensus 106 --G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 132 (260)
T PRK07657 106 --GIALGGGLELALA----CDF--RIAAESASLGL 132 (260)
T ss_pred --CEeechHHHHHHh----CCE--EEeeCCCEEcC
Confidence 6666654 44444 366 67776666554
No 373
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=85.93 E-value=0.8 Score=55.80 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=48.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec---chHHHHHhhccccc----cccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---GFSALNKLLGREVY----SSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt---Gp~al~~~lG~evy----~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. |...+-..+|.... -+...+.+. -...-
T Consensus 100 ~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~vG~~~a~~lll~g~~~~a~-eA~~~ 178 (262)
T PRK07468 100 PKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVARMGEANARRVFMSARLFDAE-EAVRL 178 (262)
T ss_pred CCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhhccHHHHHHHHHhCCccCHH-HHHHc
Confidence 469999999999999999999999999999865 3332 11111122343220 011122222 23479
Q ss_pred CceEEEecCc
Q 000092 1808 GVVHLTVSDD 1817 (2267)
Q Consensus 1808 Gv~d~~v~dd 1817 (2267)
|++|.+++++
T Consensus 179 Glv~~v~~~~ 188 (262)
T PRK07468 179 GLLSRVVPAE 188 (262)
T ss_pred CCcceecCHH
Confidence 9999999754
No 374
>PRK08139 enoyl-CoA hydratase; Validated
Probab=85.90 E-value=6.6 Score=48.12 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h--------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F--------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~--------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.++. ..+-+|+|.-.+ .|+.|..-. . ....+...+++..+..+..|+|+.|-
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (266)
T PRK08139 33 NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVH 112 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57889999999999988764 456666665433 377665311 0 11122334577788899999999996
Q ss_pred cCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+.. ++. .|+ ++|.++++++.
T Consensus 113 --G~a~GgG~~lala----cD~--ria~~~a~f~~ 139 (266)
T PRK08139 113 --GIATAAGCQLVAS----CDL--AVAADTARFAV 139 (266)
T ss_pred --ceeeHHHHHHHHh----CCE--EEEeCCCEEeC
Confidence 767665543 444 366 77777777665
No 375
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=85.81 E-value=9 Score=46.85 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhccc-C-CcEEEEecCC-CCCCchhh-hh--------------hchHHHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNRE-E-LPLFILANWR-GFSGGQRD-LF--------------EGILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~-~-lPLv~l~d~~-Gf~~G~~~-e~--------------~gilk~ga~iv~al~~~~vP 2003 (2267)
.++.++-.....++++.+... . +-+|+|.-.+ .|+.|..= +. .........++.++..+.+|
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 26 NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 678899999999999988753 3 6666665543 36666431 10 01112234567788999999
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceeecccccEEEee
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
+|+.|- |-+.||+..... ..|+ ++|.++++++..
T Consensus 106 vIaav~--G~a~GgG~~lal---acD~--~ia~~~a~f~~~ 139 (266)
T PRK05981 106 IVTAVN--GPAAGVGMSFAL---MGDL--ILCARSAYFLQA 139 (266)
T ss_pred EEEEEC--CEeehHHHHHHH---hCCE--EEecCCCEEech
Confidence 999996 777665544332 2487 899988887743
No 376
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=85.78 E-value=7.6 Score=42.69 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=68.8
Q ss_pred CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccc
Q 000092 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ 310 (2267)
Q Consensus 231 yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~q 310 (2267)
-|+.|||....-.--=.++.+.++|. ......+..++++.+.++-..|+.+-++. |+++... ..+..
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~----~~~~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s-----~Y~~~- 68 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLI----GFGSLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGS-----PYRGD- 68 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhcc----ccCCCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEe-----ecCCC-
Confidence 48999999865444334666666655 22223345689999999877777776653 5666542 11111
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHHH-HcCceeeeEEEEEEEccCCcEEEeeeCcc
Q 000092 311 KIIEEGPITVAPLETVKKLEQAARRLAK-CVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2267)
Q Consensus 311 KiieeaPa~~l~~e~~~eL~~~A~rla~-aLGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2267)
+....+++. .+.+.+.++ .-..-.+..+|+=++. +|+.+++|+|+=
T Consensus 69 ------~~~~~~~~~----~~~~~~~~~~~~~~p~~~vlDvg~~~-~G~~~lVE~N~~ 115 (130)
T PF14243_consen 69 ------WDLEPDPDV----VAFAIQALAAAWTLPPAYVLDVGVTD-DGGWALVEANDG 115 (130)
T ss_pred ------cccCCCHHH----HHHHHHHHHhcccCCCeEEEEEEEeC-CCCEEEEEecCc
Confidence 111123333 333344444 2333477889998884 789999999994
No 377
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=85.71 E-value=12 Score=45.51 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=61.9
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--hh-----chHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FE-----GILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~~-----gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
...+.+.......++++.+++ ..+-+|+|.-.+ .|+.|..-. .. ........++..+..+.+|+|+.|-
T Consensus 23 ~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 100 (255)
T PRK09674 23 RNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVN-- 100 (255)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 367889999999999998865 466777776543 267665311 00 1112234567778899999999996
Q ss_pred CcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.|| .-.++.+ |+ ++|.++++++.
T Consensus 101 G~a~GgG~~lalac----D~--~ia~~~a~f~~ 127 (255)
T PRK09674 101 GYALGAGCELALLC----DI--VIAGENARFGL 127 (255)
T ss_pred CEeehHHHHHHHhC----CE--EEecCCCEEeC
Confidence 666665 4444443 66 67776666554
No 378
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=85.69 E-value=1.3 Score=53.93 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=53.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec---chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt---Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++-.||++|+.+++.+ ++. |...+-+.+|... .-+...+.+.+ ....
T Consensus 99 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~~ 177 (262)
T PRK05995 99 PKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDAAE-ALRL 177 (262)
T ss_pred CCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHHHHHHHHcCCccCHHH-HHHc
Confidence 4699999999999999999999999999988653 332 2222344455433 11222222222 3468
Q ss_pred CceEEEecCcHHHHHHHHHH
Q 000092 1808 GVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~ 1827 (2267)
|++|.+++++ +....+.+|
T Consensus 178 Glv~~vv~~~-~l~~~a~~~ 196 (262)
T PRK05995 178 GLVHEVVPAE-ALDAKVDEL 196 (262)
T ss_pred CCCCeecCHH-HHHHHHHHH
Confidence 9999999643 344444444
No 379
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=85.54 E-value=29 Score=42.39 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=60.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h------hhchHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L------FEGILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e------~~gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
.++.++......++++.++. ..+-+|+|.-.+ .|+.|..= + .....+....++..+..+..|+|+.|- |
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~--G 107 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVN--G 107 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc--c
Confidence 57889999999999998864 566777776543 36766531 1 011122344567788899999999997 6
Q ss_pred cCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.+.|| .-+++.+ |+ ++|.++++++.
T Consensus 108 ~a~GgG~~lalac----D~--ria~~~a~f~~ 133 (261)
T PRK08138 108 YALGGGCELAMHA----DI--IVAGESASFGQ 133 (261)
T ss_pred EEEcHHHHHHHhC----CE--EEecCCCEeeC
Confidence 66554 4444443 55 56655555543
No 380
>PRK11778 putative inner membrane peptidase; Provisional
Probab=85.47 E-value=7.6 Score=48.95 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=79.1
Q ss_pred cEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC-CchhHhhhccccCCccceeecccccEEEe
Q 000092 1965 PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL-RGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 1965 PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~-~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-||.-.|+||-+... .+ ..+..+..+.+.+.|+++++- +-+ -||-|+++. +|. +||.|.+.+|.
T Consensus 125 aVvLridSpGG~v~~---s~----~a~~~l~~lr~~~kpVva~v~--~~AASggY~iAsa----AD~--I~A~P~a~vGS 189 (330)
T PRK11778 125 EVLLRLESPGGVVHG---YG----LAASQLQRLRDAGIPLTVAVD--KVAASGGYMMACV----ADK--IIAAPFAIVGS 189 (330)
T ss_pred eEEEEEeCCCCchhH---HH----HHHHHHHHHHhcCCCEEEEEC--CchhhHHHHHHHh----CCE--EEECCCCeEEe
Confidence 489999999933221 11 123335567778899999885 333 455555554 365 99999999988
Q ss_pred eCccchhhhhcchhhhHHHhhcchHHHHHHHH-HHHHhh---cCCCHHHHHHHHHHHHHHH-------Hhccc--hhhHH
Q 000092 2044 LEPEGMIEIKFRTKELLECMGRLDQKLIDLMA-KLQEAK---NNRTLAMVESLQQQIKARE-------KQLLP--TYTQV 2110 (2267)
Q Consensus 2044 l~pegav~I~~r~~~~~~~m~r~d~~~~~l~~-~l~~~~---~~~~~~~~~~~~~~i~~r~-------~~l~p--~y~~~ 2110 (2267)
+|.-+. . +--. +.+.+++=...-++. +.++.. ...++++++.++..+.... .+-.| -..++
T Consensus 190 IGVi~~--~-~~~~---~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~v 263 (330)
T PRK11778 190 IGVVAQ--I-PNFH---RLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKV 263 (330)
T ss_pred eeeeee--c-cCHH---HHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHH
Confidence 887332 1 1111 111111100000000 000000 1235566666665554310 00111 01122
Q ss_pred HHHhHhhhCcHHHHHHcCCcccccCccch
Q 000092 2111 ATKFAELHDTSLRMAAKGVIKEVVDWDKS 2139 (2267)
Q Consensus 2111 a~~fadlhdt~~rm~~~G~Id~ii~~~~~ 2139 (2267)
| .-.+-++..+.+.|+||+|-...+.
T Consensus 264 a---~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 264 A---TGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred H---hCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 2 2246788999999999999876554
No 381
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=85.44 E-value=27 Score=42.63 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchh-hh-h-----hchHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQR-DL-F-----EGILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~-~e-~-----~gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
.++.++....+.++++.++. ..+-+|+|.-.+ .|+.|.. .+ . .........++..+..+..|+|+.|- |
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~--G 103 (257)
T PRK05862 26 NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVA--G 103 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc--c
Confidence 57889999999999988864 466678887654 3666653 11 0 01112233456778889999999997 6
Q ss_pred cCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-+.|| .-+++.+ |+ ++|.++++++.
T Consensus 104 ~a~GgG~~lalac----D~--~ia~~~a~f~~ 129 (257)
T PRK05862 104 YALGGGCELAMMC----DI--IIAADTAKFGQ 129 (257)
T ss_pred EEeHHHHHHHHHC----CE--EEEeCCCEEeC
Confidence 66665 4444443 66 77777766655
No 382
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=85.40 E-value=12 Score=45.78 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=61.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h------h--c---hHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F------E--G---ILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~------~--g---ilk~ga~iv~al~~~~vP~i~v 2007 (2267)
.++.++......++++.++. ..+-+|+|.-.+ .|+.|..-. . . . ..+....++.++..++.|+|+.
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (262)
T PRK07468 27 NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGR 106 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47889999999999998865 456667776543 377775311 0 0 0 1122344677889999999999
Q ss_pred EccCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+.. ++. .|+ ++|.++++++.
T Consensus 107 v~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 135 (262)
T PRK07468 107 IQ--GQAFGGGVGLISV----CDV--AIAVSGARFGL 135 (262)
T ss_pred EC--CEEEhHHHHHHHh----CCE--EEEeCCCEEeC
Confidence 96 666665443 343 366 67777666554
No 383
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=85.40 E-value=0.82 Score=55.69 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=53.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++.+. +. |...+-+.+|... .-+...+.+. =...
T Consensus 96 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~-eA~~ 174 (261)
T PRK11423 96 PKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQ-RALA 174 (261)
T ss_pred CCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHH-HHHH
Confidence 46999999999999999999999999999987643 22 2222333444322 1111222222 2356
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +....++++
T Consensus 175 ~GLv~~vv~~~-~l~~~a~~~ 194 (261)
T PRK11423 175 VGILNHVVEVE-ELEDFTLQM 194 (261)
T ss_pred cCCcCcccCHH-HHHHHHHHH
Confidence 89999999743 444444444
No 384
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=85.28 E-value=1.1 Score=54.03 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchH-----------HHHHhhcccc----ccccccCCcccccccc
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS-----------ALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~-----------al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
-|.|+.+-|-++|||.-|+.+||++||.+++.+++..++ =+-...|... .-+-.- =|++-..+-
T Consensus 128 KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~-~~AqeA~~~ 206 (290)
T KOG1680|consen 128 KPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRR-LGAQEAKKI 206 (290)
T ss_pred cceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCc-ccHHHHHhC
Confidence 499999999999999999999999999999987776543 1111122110 000000 012222368
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVPP 1833 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP~ 1833 (2267)
|++..|++ ..+++....+|..-+-+
T Consensus 207 GlVn~Vvp-~~~~l~eAv~l~~~Ia~ 231 (290)
T KOG1680|consen 207 GLVNKVVP-SGDALGEAVKLAEQIAK 231 (290)
T ss_pred CceeEeec-chhHHHHHHHHHHHHHh
Confidence 99999997 45577777777655543
No 385
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=85.23 E-value=14 Score=45.50 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=62.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-------------hchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------------EGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-------------~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.++.......+++.++. ..+-+|+|.-.+ .|+.|..-.. .........++.++..+.+|+|+
T Consensus 39 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (277)
T PRK08258 39 NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIA 118 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57888889999999988864 566677776543 3666543110 01112234677888999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 119 aV~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 148 (277)
T PRK08258 119 AVD--GVCAGAGAILAMA----SDL--RLGTPSAKTAF 148 (277)
T ss_pred EEC--CeeehHHHHHHHh----CCE--EEecCCCEEec
Confidence 996 6666654 44444 376 77878777766
No 386
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=85.17 E-value=27 Score=42.56 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h------hchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F------EGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~------~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.+.. ..+-+|+|...+ .|+.|..-. . .........++..+..+..|+|+.|-
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-- 104 (259)
T PRK06688 27 NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN-- 104 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC--
Confidence 57888999999999988875 467778886544 366665311 0 11234456677888899999999997
Q ss_pred CcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -+++. .|+ ++|.++++++.
T Consensus 105 G~a~GgG~~lal~----cD~--ria~~~a~f~~ 131 (259)
T PRK06688 105 GPAVGVGVSLALA----CDL--VYASESAKFSL 131 (259)
T ss_pred CeeecHHHHHHHh----CCE--EEecCCCEecC
Confidence 6666654 44444 366 67776666655
No 387
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=85.13 E-value=32 Score=44.51 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h----hch-------HHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F----EGI-------LQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~----~gi-------lk~ga~iv~al~~~~vP~i~ 2006 (2267)
-++..+-...+.++++.+.. -.+-+|+|.-.+ .|..|..-- . .+. .+..-.+...+..+..|+|+
T Consensus 31 NALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa 110 (381)
T PLN02988 31 NALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVS 110 (381)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 57888899999999988754 566777776544 477664211 1 110 11111234567889999999
Q ss_pred EEccCCcCCch-hHhhhccccCCccceeecccccEEE
Q 000092 2007 YIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGN 2042 (2267)
Q Consensus 2007 vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~g 2042 (2267)
.|- |-+.|| ..+++.+ |+ .+|.++++++
T Consensus 111 ~v~--G~a~GGG~~Lal~~----D~--rvate~a~f~ 139 (381)
T PLN02988 111 ILN--GIVMGGGAGVSVHG----RF--RIATENTVFA 139 (381)
T ss_pred Eec--CeEeehhhHHhhcC----Ce--EEEcCCcEEe
Confidence 986 666664 4444443 44 4555544443
No 388
>PF13437 HlyD_3: HlyD family secretion protein
Probab=84.91 E-value=1.1 Score=46.63 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.5
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 726 ~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
+|+||.+|+|..+ +++|+.|.+|++|+.|...+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 35 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTDD 35 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccce
Confidence 4899999999988 999999999999999987543
No 389
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=84.85 E-value=9.8 Score=46.59 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh---------hch---HHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------EGI---LQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~---------~gi---lk~ga~iv~al~~~~vP~i~v 2007 (2267)
-++.+.......++++.++. ..+=+|+|.-.+ .|+.|..-.. ... .+....++..+..+..|+|+.
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 28 NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47888889999999998865 345566665543 3666652110 001 122345777888999999999
Q ss_pred EccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.|| ..+++. .|+ ++|.++++++.
T Consensus 108 V~--G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 136 (265)
T PRK05674 108 VQ--GAAFGGALGLISC----CDM--AIGADDAQFCL 136 (265)
T ss_pred Ec--CEEEechhhHhhh----cCE--EEEeCCCEEeC
Confidence 97 666554 444444 476 77777777766
No 390
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=84.82 E-value=0.56 Score=57.61 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=23.1
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.+|.++.+|+|+.+ |++|+.|++||+|++|++.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 03678999999999 9999999999999999875
No 391
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=84.41 E-value=2.7 Score=49.73 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=34.2
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp 1780 (2267)
.|+|+++.|.|.|+|-+++..||++++.+++.+...|.
T Consensus 71 kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv 108 (211)
T cd07019 71 KPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGI 108 (211)
T ss_pred CCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEE
Confidence 49999999999999999999999999999987766663
No 392
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=84.26 E-value=14 Score=44.74 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=62.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhh-hh-h---c---hHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD-LF-E---G---ILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~-e~-~---g---ilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..++.+.......++++.++. ..+-+|+|.-.++ |+.|..= +. . + .......++..+..+++|+|+.|-
T Consensus 27 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 105 (251)
T PRK06023 27 KNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVD- 105 (251)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeC-
Confidence 368899999999999998875 4567777765543 6666531 11 0 0 112234567788999999999996
Q ss_pred CCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ -+++. .|+ ++|.++++++.
T Consensus 106 -G~a~GgG~~la~a----cD~--ria~~~a~f~~ 132 (251)
T PRK06023 106 -GLAIGIGTTIHLH----CDL--TFASPRSLFRT 132 (251)
T ss_pred -CceecHHHHHHHh----CCE--EEEeCCCEecC
Confidence 6666654 44444 366 77777776654
No 393
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=84.00 E-value=2 Score=53.32 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=39.8
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc--ccceeeecCCCcEEEEe
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM--KMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM--KM~~~l~ap~~G~v~~i 738 (2267)
..++||-+| ++...++.|+.|++||++++|--. .-..+++||.+|+|-.+
T Consensus 232 ~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 232 DWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred EEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 358999998 666889999999999999999432 11345899999998765
No 394
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=83.93 E-value=12 Score=45.74 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh---------hch-HHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF---------EGI-LQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~---------~gi-lk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.++......++++.++. ..+-+|+|.-.+ .|+.|..-.. .+. ......++..+..+..|+|+.|
T Consensus 25 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (259)
T TIGR01929 25 NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMV 104 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57888999999999988765 456677776654 3777763110 000 0012345667888999999999
Q ss_pred ccCCcCCchhHh-hhccccCCccceeecccccEEEee
Q 000092 2009 PMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2009 ~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
- |-+.||+.. ++. .|+ ++|.++++++.-
T Consensus 105 ~--G~a~GgG~~lala----cD~--~ia~~~a~f~~p 133 (259)
T TIGR01929 105 N--GYAIGGGHVLHVV----CDL--TIAAENARFGQT 133 (259)
T ss_pred c--CEEehHHHHHHHh----CCE--EEecCCCEecCc
Confidence 6 666665544 443 466 677776666653
No 395
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=83.77 E-value=31 Score=42.36 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=62.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-hh-------------------chHHHHHHHHHHHhc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FE-------------------GILQAGSTIVENLRT 1999 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~~-------------------gilk~ga~iv~al~~ 1999 (2267)
.+++++...-..++++.+++ ..+-+|+|...+ .|+.|..-. .. ........++.++..
T Consensus 28 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 107 (272)
T PRK06142 28 NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVAD 107 (272)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998865 567888887644 477665311 00 011223456777888
Q ss_pred CCCCEEEEEccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2000 YKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2000 ~~vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+..|+|+.|- |.+.| |.-+++.+ |+ ++|.++++++.
T Consensus 108 ~~kpvIAav~--G~a~GgG~~lalac----D~--~ia~~~a~f~~ 144 (272)
T PRK06142 108 CRKPVIAAVQ--GWCIGGGVDLISAC----DM--RYASADAKFSV 144 (272)
T ss_pred CCCCEEEEec--CccccchHHHHHhC----CE--EEecCCCeecc
Confidence 9999999996 66666 44444443 66 66666666544
No 396
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=83.67 E-value=1.7 Score=49.63 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred eecCCCceeEEEEccCCCEEcC----CCcEEEEEccccceeeecCCCcEEEEe---------------------------
Q 000092 690 LVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK--------------------------- 738 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~----G~~l~~iEaMKM~~~l~ap~~G~v~~i--------------------------- 738 (2267)
|.||+.|+++.+ -+.-|.|-+ |+-+|+.=. +..|.||.+|+|..+
T Consensus 23 i~aP~~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~ 98 (169)
T PRK09439 23 IIAPLSGEIVNI-EDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVE 98 (169)
T ss_pred EEecCCeEEEEh-HHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccc
Q ss_pred ---------eCCCCccCCCCEEEEEecC
Q 000092 739 ---------MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 739 ---------~~~G~~v~~G~~La~l~~~ 757 (2267)
+++||.|.+||+|++++++
T Consensus 99 L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 99 LKGEGFKRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred cCCCceEEEecCCCEEeCCCEEEEEcHH
No 397
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=83.64 E-value=18 Score=44.00 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--hh----c---hHHHHHH-HHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FE----G---ILQAGST-IVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~~----g---ilk~ga~-iv~al~~~~vP~i~vI~ 2009 (2267)
.++.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-. .. + ....... +...+..+.+|+|+.|-
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 100 (255)
T PRK06563 21 NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQ 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEc
Confidence 57889999999999988765 456667776544 366665211 00 1 1111122 22347788999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ -.++. .|+ ++|.++++++.
T Consensus 101 --G~a~GgG~~lal~----cD~--ria~~~a~f~~ 127 (255)
T PRK06563 101 --GYCLTLGIELMLA----ADI--VVAADNTRFAQ 127 (255)
T ss_pred --CeeecHHHHHHHh----CCE--EEecCCCEEeC
Confidence 6666654 44444 477 78887777765
No 398
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=83.53 E-value=11 Score=46.00 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh--h-----------chHHHHHHHHHHHhcCCCCEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--E-----------GILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~--~-----------gilk~ga~iv~al~~~~vP~i 2005 (2267)
.++..+...-..++++.+++ ..+-+|+|.-.+ .|+.|..-.. . ...+....++.++..+.+|+|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57888999999999998865 567778887655 3777763210 0 111122346677888999999
Q ss_pred EEEccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |-+.||+. .++. .|+ ++|.++++++.
T Consensus 105 aav~--G~a~GgG~~lal~----cD~--ria~~~a~f~~ 135 (260)
T PRK05980 105 AAVN--GLAFGGGCEITEA----VHL--AIASERALFAK 135 (260)
T ss_pred EEEc--CEEEhhhhHHhHh----CCE--EEecCCCEecC
Confidence 9997 66666544 3443 365 66666666554
No 399
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=83.49 E-value=1.1 Score=58.66 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=40.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEee
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~ 739 (2267)
++-.|.--+.+|++||+|++||+|++-... +..++.||.+|+|+.|.
T Consensus 34 ~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 34 RDFVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred hhcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 445677778999999999999999998754 67899999999999993
No 400
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=83.45 E-value=1.1 Score=58.34 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=21.0
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
..|.||.+|.|.+++|++||+|++||+|+.|+
T Consensus 59 ~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~ 90 (421)
T TIGR03794 59 DTIQSPGSGVVIDLDVEVGDQVKKGQVVARLF 90 (421)
T ss_pred eEEECCCCeEEEEEECCCcCEECCCCEEEEEC
Confidence 35666666666666666666666666666664
No 401
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=83.24 E-value=15 Score=44.73 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h-h----hchHHHHHHHHHHHhcCCCCEEEEEccCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L-F----EGILQAGSTIVENLRTYKQPVFVYIPMMAE 2013 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e-~----~gilk~ga~iv~al~~~~vP~i~vI~~~g~ 2013 (2267)
-.+++.......++++.++. -.+-+|+|.-.+ .|+.|..- + . .........++.++..+.+|+|+.|- |-
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~--G~ 99 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVR--GQ 99 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEec--Ce
Confidence 47889999999999998865 456677776543 36666531 1 0 11223334567788899999999997 66
Q ss_pred CCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2014 LRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2014 ~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.| |.-+++.+ |+ ++|.++++++.
T Consensus 100 a~GgG~~lal~c----D~--~ia~~~a~f~~ 124 (251)
T TIGR03189 100 CLGGGLEVAAAG----NL--MFAAPDAKLGQ 124 (251)
T ss_pred eeeHHHHHHHhC----CE--EEEcCCCEEeC
Confidence 655 44444443 66 77777776665
No 402
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=83.12 E-value=8 Score=47.59 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh--------hchHH--HHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--------EGILQ--AGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~--------~gilk--~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++......++++.++. -.+-+|+|.-.+ -|+.|..-.. ..... ....++..+..+.+|+|+.|
T Consensus 35 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T PRK07396 35 NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV 114 (273)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence 57889999999999998865 356677777654 2777653110 00011 11235667888999999999
Q ss_pred ccCCcCCchhH-hhhccccCCccceeecccccEEEeeCc
Q 000092 2009 PMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2009 ~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
- |.+.||+. +++. .|+ ++|.++++++.-++
T Consensus 115 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe~ 145 (273)
T PRK07396 115 A--GYAIGGGHVLHLV----CDL--TIAADNAIFGQTGP 145 (273)
T ss_pred C--CEEehHHHHHHHh----CCE--EEeeCCcEEecccc
Confidence 6 66666544 3444 477 77877777776443
No 403
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=82.95 E-value=1.3 Score=53.17 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-...|.||..|+|.++++++||.|..||+|++||
T Consensus 240 meieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 240 LMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 3457999999999999999999999999999996
No 404
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=82.84 E-value=14 Score=45.05 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=62.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-hh----hc---hHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LF----EG---ILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e~----~g---ilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
-++..+......++++.++. ..+-+|+|.-.. .|+.|..- +. .. .......++.++..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~- 102 (256)
T TIGR03210 24 NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ- 102 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 57888999999999988864 566777777655 37776531 11 00 111234567788899999999996
Q ss_pred CCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -.++.+ |+ ++|.++++++.
T Consensus 103 -G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 129 (256)
T TIGR03210 103 -GYAIGGGNVLVTIC----DL--TIASEKAQFGQ 129 (256)
T ss_pred -CEEehhhHHHHHhC----CE--EEEeCCCEEec
Confidence 6666654 444443 66 77777776665
No 405
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=82.75 E-value=1.7 Score=56.77 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=39.3
Q ss_pred EEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 672 LLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 672 v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
|..+..-+.++.+.-...|.||..|+|.++++++||.|+.||+|+.||.
T Consensus 119 V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 119 VQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred ecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 3334444455555556789999999999999999999999999999974
No 406
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=82.73 E-value=1.9 Score=46.72 Aligned_cols=63 Identities=22% Similarity=0.388 Sum_probs=37.0
Q ss_pred CCceecCCCceeEEEEccCCCE-E--cCCCcEEE---EEccccceeeecCCCcE-EEEeeCCCCccCCCCEEEEEecC
Q 000092 687 PSKLVAETPCKLLRYLVSDGSH-I--DADTPYAE---VEVMKMCMPLLSPASGV-LQFKMAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~-V--~~G~~l~~---iEaMKM~~~l~ap~~G~-v~~i~~~G~~v~~G~~La~l~~~ 757 (2267)
.+.+.||..|+|..+.-..-.. + +.|-.+++ |.+.|| .|. .+..+++||.|.+||+|++++.+
T Consensus 35 ~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~L--------~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 35 DGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceeec--------CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 4689999999998764321111 1 11221111 122222 232 23448999999999999999854
No 407
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=82.62 E-value=1.4 Score=54.17 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=57.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec--c---hHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT--G---FSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt--G---p~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. + ...+-+.+|... .-+...+.+.+ ..
T Consensus 107 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~e-A~ 185 (278)
T PLN03214 107 RLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAE-AK 185 (278)
T ss_pred CCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHH-HH
Confidence 469999999999999999999999999998864 3442 1 123555566432 11112233222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
.-|++|.++++ .+..+.+++|..-
T Consensus 186 ~~Glv~~vv~~-~~l~~~a~~~a~~ 209 (278)
T PLN03214 186 QLGLIDEVVPA-AALMEAAASAMER 209 (278)
T ss_pred HcCCCcEecCh-HHHHHHHHHHHHH
Confidence 68999999975 4555566665443
No 408
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=82.61 E-value=9.6 Score=46.24 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=60.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-----hchHHH-HHHHHHHHhcCCCCEEEEEccCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-----EGILQA-GSTIVENLRTYKQPVFVYIPMMAE 2013 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-----~gilk~-ga~iv~al~~~~vP~i~vI~~~g~ 2013 (2267)
..+.++-..-..++++.++. ..+.+|+|...+ .|+.|..-.. .+...+ ...++..+..++.|+|+.|- |.
T Consensus 27 Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~--G~ 104 (249)
T PRK07110 27 NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQ--GH 104 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEec--Cc
Confidence 57888999999999988865 456677776543 3777753111 011011 13567788899999999996 66
Q ss_pred CCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2014 LRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2014 ~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|| ...++.+ |+ ++|.++++++.
T Consensus 105 a~GgG~~lal~c----D~--~ia~~~a~f~~ 129 (249)
T PRK07110 105 AIGGGLVLGLYA----DI--VVLSRESVYTA 129 (249)
T ss_pred eechHHHHHHhC----CE--EEEeCCCEecC
Confidence 6554 4445544 66 67766665543
No 409
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=82.40 E-value=5 Score=51.73 Aligned_cols=112 Identities=12% Similarity=0.178 Sum_probs=66.9
Q ss_pred EEEEEEEEecCCceEEEeCCceEEEEe---eecccceEEEEcCceeecccCCCCCceecCCCceeEEEEcc-CCCEEcCC
Q 000092 637 EIEAEIHTLRDGGLLMQLDGNSHVVYA---EEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS-DGSHIDAD 712 (2267)
Q Consensus 637 ~~~V~v~~l~dg~~~v~~~G~s~~v~~---~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~-~Gd~V~~G 712 (2267)
.+.+.++..+++.+.+.++|.+|..-. ..+.....+.+++ ..+.+..+.-.-|..+.++.+ .+-.|+-.
T Consensus 512 ~v~v~V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~g~~~~l~~~~~~~~ve~~ 584 (670)
T KOG0238|consen 512 PVHVAVRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDG-------EGNGYQGRVIILGDEISLFSNEGVIKVEVL 584 (670)
T ss_pred ceEEEEEECCCCeEEEEecCCceEeeccceecccccceEEEEe-------ccCceEEEEEEeCCeEEEEecCcceeEecC
Confidence 367788888899999999999854321 2222222222222 122333333344433333333 22333333
Q ss_pred CcEEEEEccccce------eeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 713 TPYAEVEVMKMCM------PLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 713 ~~l~~iEaMKM~~------~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
++ -.++.|+-+. .+.||..|.|.++ +++|+.|..||.|+.++.
T Consensus 585 ~~-k~l~~~~s~~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 585 PP-KYLSPQSSETKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred Ch-HhhhhhhhhhccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 33 3334444433 3789999999988 999999999999998874
No 410
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=82.38 E-value=12 Score=46.04 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-hh-h----c-------hHHHHHHHHHHHhcCCCCEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-E----G-------ILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e~-~----g-------ilk~ga~iv~al~~~~vP~i 2005 (2267)
...+.++...-..++++.++. ..+-+|+|.-.+ .|+.|..- +. . + ..+....++.++..+.+|+|
T Consensus 29 ~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 29 RNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 357889999999999998865 566677776544 36666531 10 0 0 11122346777889999999
Q ss_pred EEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |.+.||+ -+++.+ |+ ++|.++|+++.
T Consensus 109 Aav~--G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 139 (275)
T PRK09120 109 AMVN--GWCFGGGFSPLVAC----DL--AIAADEAQFGL 139 (275)
T ss_pred EEEc--CEEechhHHHHHhC----CE--EEEeCCcEecC
Confidence 9996 6666654 444443 66 66666666655
No 411
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=82.33 E-value=1.9 Score=56.44 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEee
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~ 739 (2267)
.-.|.--+.+|++||+|++||+|++-... +..++.||.+|+|+.|.
T Consensus 36 qh~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 36 DYVGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred hcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 33566667999999999999999976654 57899999999999993
No 412
>PLN02888 enoyl-CoA hydratase
Probab=82.27 E-value=19 Score=44.12 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h----hchH-HHHHHHHHHHhcCCCCEEEEEccCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F----EGIL-QAGSTIVENLRTYKQPVFVYIPMMAE 2013 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~----~gil-k~ga~iv~al~~~~vP~i~vI~~~g~ 2013 (2267)
..+.++-.....++++.++. ..+-+|+|.-.+ .|+.|..-. . .+-. .....++..+..+.+|+|+.|- |-
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~--G~ 109 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAIN--GF 109 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEEC--Ce
Confidence 57889999999999998865 456667776543 477776421 1 1111 1123456678889999999997 66
Q ss_pred CCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2014 LRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2014 ~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.||+. +++. .|+ ++|.++++++.
T Consensus 110 a~GgG~~lal~----cD~--ria~~~a~f~~ 134 (265)
T PLN02888 110 AITAGFEIALA----CDI--LVASRGAKFID 134 (265)
T ss_pred eechHHHHHHh----CCE--EEecCCCEecC
Confidence 666544 4444 376 77777776655
No 413
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=82.21 E-value=1 Score=54.90 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=50.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. |...|.+.+|... .-+...+++.+ ...
T Consensus 98 ~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~e-A~~ 176 (260)
T PRK07659 98 PKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATE-ALD 176 (260)
T ss_pred CCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHH-HHH
Confidence 469999999999999999999999999999875 3332 2233555555432 11223333333 447
Q ss_pred cCceEEEec
Q 000092 1807 NGVVHLTVS 1815 (2267)
Q Consensus 1807 nGv~d~~v~ 1815 (2267)
-|++|.+++
T Consensus 177 ~Glv~~vv~ 185 (260)
T PRK07659 177 LGLIDEVIG 185 (260)
T ss_pred cCChHHHhh
Confidence 899999983
No 414
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=81.92 E-value=19 Score=43.87 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhhh------hc-----hHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------EG-----ILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e~------~g-----ilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
.++.++......++++.++. .+-+|++...+ -|+.|..-.. .+ .......++..+..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 104 (255)
T PRK07112 26 NTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVR 104 (255)
T ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEe
Confidence 57889999999999998874 56677776544 3666652110 00 012224567778889999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -+++. .|+ ++|.++++++.
T Consensus 105 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 131 (255)
T PRK07112 105 --GKVNAGGIGFVAA----SDI--VIADETAPFSL 131 (255)
T ss_pred --cEEEcchhHHHHc----CCE--EEEcCCCEEeC
Confidence 6666654 44444 477 78888888776
No 415
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=81.83 E-value=1.8 Score=54.39 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK 722 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK 722 (2267)
...|.||..|+|.+++|++|+.|+.||+|+.|+.++
T Consensus 45 ~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 456999999999999999999999999999998653
No 416
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=81.60 E-value=1.5 Score=53.13 Aligned_cols=89 Identities=24% Similarity=0.175 Sum_probs=61.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++.+ +|. |-..+-+.+|..- .-+...+.+ +-...
T Consensus 98 ~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a-~eA~~ 176 (257)
T COG1024 98 PKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISA-AEALE 176 (257)
T ss_pred CCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCH-HHHHH
Confidence 5799999999999999999999999999988753 332 2234455555432 011122222 22347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
.|++|.++++..+..+.+++|..-+
T Consensus 177 ~Glv~~vv~~~~~l~~~a~~~a~~~ 201 (257)
T COG1024 177 LGLVDEVVPDAEELLERALELARRL 201 (257)
T ss_pred cCCcCeeeCCHHHHHHHHHHHHHHH
Confidence 9999999987667777777776654
No 417
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=81.47 E-value=1.7 Score=42.23 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
...++||..|+|+++.++.|+.|..|++++.|
T Consensus 42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45699999999999999999999999999864
No 418
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=81.21 E-value=1.9 Score=52.03 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=38.8
Q ss_pred ecCCCceeEEEEccCCCEEcCCCcEEEEEcccc--ceeeecCCCcEEEEeeC
Q 000092 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM--CMPLLSPASGVLQFKMA 740 (2267)
Q Consensus 691 ~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM--~~~l~ap~~G~v~~i~~ 740 (2267)
-...+|..-+++|++||+|++||+|.+ .|- ..-..||.+|+|+.|.+
T Consensus 33 ~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 33 PDDFPGMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred CcccCCCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 456788889999999999999999986 333 34468999999999955
No 419
>PRK08321 naphthoate synthase; Validated
Probab=81.20 E-value=12 Score=46.69 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=61.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--------CCCCchhhhh--------------h--chHHH----HHH
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--------GFSGGQRDLF--------------E--GILQA----GST 1992 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--------Gf~~G~~~e~--------------~--gilk~----ga~ 1992 (2267)
..+.++...-..++++.++. ..+-+|+|.-.+ .|+.|..-.. . ...+. ...
T Consensus 47 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (302)
T PRK08321 47 NAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILE 126 (302)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHH
Confidence 57889999999999998864 567777776543 3766653110 0 00001 112
Q ss_pred HHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecc-cccEEEeeC
Q 000092 1993 IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYAD-RTAKGNVLE 2045 (2267)
Q Consensus 1993 iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~-p~A~~gvl~ 2045 (2267)
+...+..+.+|+|+.|- |.+.||+...... .|+ ++|. ++++++..+
T Consensus 127 ~~~~l~~~pkP~IAaV~--G~a~GgG~~lala---cD~--ria~~~~a~f~~pe 173 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVP--GWAAGGGHSLHVV---CDL--TLASREHARFKQTD 173 (302)
T ss_pred HHHHHHcCCCCEEEEEc--CeeehHHHHHHHh---CCE--EEEecCCCEEECCc
Confidence 44567788999999996 6666655443322 476 7777 577777643
No 420
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=81.16 E-value=53 Score=40.01 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=67.0
Q ss_pred CccCHHHHHHHHHHHHHhccc-CCcEEEEecCC-CCCCchhhhh-h---------chHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNRE-ELPLFILANWR-GFSGGQRDLF-E---------GILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~-~lPLv~l~d~~-Gf~~G~~~e~-~---------gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
-++.+........+++.++.. .+.+|+|.-.+ .|+.|..=-. . ........++.++..+..|+|+.|-
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 27 NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence 478999999999999999874 78888887665 4877753111 0 1233445688899999999999996
Q ss_pred cCCcCCch-hHhhhccc--c-CCccceeecccccEEEeeCccch
Q 000092 2010 MMAELRGG-AWVVVDSR--I-NSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2010 ~~g~~~GG-a~vv~~~~--~-n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
|-+.|| .-.++.+. + ..+. .++.|...+|++.+.|+
T Consensus 107 --G~a~GgG~eLal~~D~ria~~~a--~f~~pe~~iGl~Pg~g~ 146 (257)
T COG1024 107 --GYALGGGLELALACDIRIAAEDA--KFGLPEVNLGLLPGDGG 146 (257)
T ss_pred --ceEeechhhhhhcCCeEEecCCc--EecCcccccccCCCCcH
Confidence 666665 44444432 1 1122 34445555555554343
No 421
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=80.82 E-value=8 Score=52.56 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhccc-C-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc
Q 000092 1948 SATKTAQALMDFNRE-E-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR 2025 (2267)
Q Consensus 1948 sa~K~arai~~a~~~-~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~ 2025 (2267)
+....++.++.+... + -.||.-+|+||-+.... + .....+..+.....|+++++- +-.+.||-|+++++
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as---e----~i~~~i~~~~~~gKPVva~~~-g~aaSggY~iA~aa- 400 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS---E----IIRRELARAQARGKPVIVSMG-AMAASGGYWIASAA- 400 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH---H----HHHHHHHHHHhCCCcEEEEEC-CccccHHHHHHHhC-
Confidence 455677777777543 3 47888899999322111 1 123344445566789999996 22445566666654
Q ss_pred cCCccceeecccccEEEeeCc
Q 000092 2026 INSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2026 ~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
|. +||.|++.+|.+|-
T Consensus 401 ---D~--I~a~p~t~~GSIGv 416 (584)
T TIGR00705 401 ---DY--IVASPNTITGSIGV 416 (584)
T ss_pred ---CE--EEECCCCeeecCEE
Confidence 66 99999998866654
No 422
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=80.48 E-value=21 Score=44.46 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=63.2
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--------------------------hchHHHHHH
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------------------EGILQAGST 1992 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------------------~gilk~ga~ 1992 (2267)
..++.++...-..++++.++. ..+-+|+|...+ .|+.|..-.. .........
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (296)
T PRK08260 25 LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGR 104 (296)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHH
Confidence 367889999999999998865 566777776543 3665542110 001111234
Q ss_pred HHHHHhcCCCCEEEEEccCCcCCc-hhHhhhccccCCccceeecccccEEEee
Q 000092 1993 IVENLRTYKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 1993 iv~al~~~~vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
++..+..+.+|+|+.|- |-+.| |.-+++. .|+ ++|.++++++.-
T Consensus 105 ~~~~l~~~pkPvIAav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~p 149 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVN--GPAVGVGATMTLA----MDI--RLASTAARFGFV 149 (296)
T ss_pred HHHHHHhCCCCEEEEEC--CeeehHhHHHHHh----CCE--EEeeCCCEEecc
Confidence 67778889999999996 66655 4444554 477 888888877763
No 423
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=80.04 E-value=1.5 Score=50.35 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=37.0
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchH
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1781 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~ 1781 (2267)
.|+|++|.|.|.|+|.+++..||+++|.+++.+.+.|..
T Consensus 72 kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~ 110 (177)
T cd07014 72 KPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIF 110 (177)
T ss_pred CCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechH
Confidence 599999999999999999999999999999999999874
No 424
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=79.72 E-value=1.8 Score=48.40 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=39.1
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEcccccee-eecCCCcEEEEe
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK 738 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~-l~ap~~G~v~~i 738 (2267)
-..=|.-|..+-..+.+|++|.+|+.+|-+.+=|=|.. ++||.+|+|..+
T Consensus 82 L~l~~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v 132 (150)
T PF09891_consen 82 LCLVPVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFV 132 (150)
T ss_dssp -EEEEEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEE
T ss_pred EEEEEecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEE
Confidence 44568889999999999999999999999999999986 899999999877
No 425
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.37 E-value=6.6 Score=48.00 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=43.4
Q ss_pred EEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+ |+ +.++.+.+.+.|++++ +.+.+ +. ........-...+..+. .|.+.+.++++
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~--------~s~~t--~~-~~~~~~~~g~~~v~~g~-------l~~~~l~~~l~ 62 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEIL--------VTVTT--SE-GKHLYPIHQALTVHTGA-------LDPQELREFLK 62 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEE--------EEEcc--CC-ccccccccCCceEEECC-------CCHHHHHHHHH
Confidence 7899988 66 9999999999998875 22233 21 11111111112233322 56777889999
Q ss_pred HcCCCEEE
Q 000092 129 MTRVDAVW 136 (2267)
Q Consensus 129 ~~~vDaV~ 136 (2267)
+.++|+|+
T Consensus 63 ~~~i~~VI 70 (256)
T TIGR00715 63 RHSIDILV 70 (256)
T ss_pred hcCCCEEE
Confidence 99999888
No 426
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=79.09 E-value=8.1 Score=47.03 Aligned_cols=129 Identities=18% Similarity=0.192 Sum_probs=76.6
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
+||||+|+-..|.+++..+.+.|+ ++ +.++| +..............+.+++ +.+.+.+.++++
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~--------~sv~t--~~g~~~~~~~~~~~~v~~G~------lg~~~~l~~~l~ 63 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VI--------VSVAT--SYGGELLKPELPGLEVRVGR------LGDEEGLAEFLR 63 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EE--------EEEEh--hhhHhhhccccCCceEEECC------CCCHHHHHHHHH
Confidence 489999999999999999999998 54 44455 22111000000111233332 338999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++++|+-. + + .|+..+.+ .....++++|||..++........+ .+
T Consensus 64 ~~~i~~vIDA----T-H-PfA~~is~--------------------na~~a~~~~~ipylR~eRp~~~~~~-------~~ 110 (249)
T PF02571_consen 64 ENGIDAVIDA----T-H-PFAAEISQ--------------------NAIEACRELGIPYLRFERPSWQPEP-------DD 110 (249)
T ss_pred hCCCcEEEEC----C-C-chHHHHHH--------------------HHHHHHhhcCcceEEEEcCCcccCC-------CC
Confidence 9999999933 1 1 13333222 2345677888887776552221100 01
Q ss_pred ccccccccCCHHHHHHHHhhhC
Q 000092 209 DVYRQACVYTTEEAIASCQVVG 230 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IG 230 (2267)
.+ -.+.|.+++.+.+.+.+
T Consensus 111 ~~---~~v~~~~eA~~~l~~~~ 129 (249)
T PF02571_consen 111 NW---HYVDSYEEAAELLKELG 129 (249)
T ss_pred eE---EEeCCHHHHHHHHhhcC
Confidence 11 12789999988876554
No 427
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=79.08 E-value=5.9 Score=48.16 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=51.1
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|+.+|||+|+-..+.++++.+.+.|+.++ ++++| +... .. .. ...+.+++ +.|.+.+.++
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~--------~Svat--~~g~-~~--~~-~~~v~~G~------l~~~~~l~~~ 60 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIV--------LSLAG--RTGG-PA--DL-PGPVRVGG------FGGAEGLAAY 60 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEE--------EEEcc--CCCC-cc--cC-CceEEECC------CCCHHHHHHH
Confidence 57889999999999999999999998875 55555 3222 11 11 12333322 2378999999
Q ss_pred HHHcCCCEEEeC
Q 000092 127 AEMTRVDAVWPG 138 (2267)
Q Consensus 127 A~~~~vDaV~pG 138 (2267)
++++++++|+-.
T Consensus 61 l~~~~i~~VIDA 72 (248)
T PRK08057 61 LREEGIDLVIDA 72 (248)
T ss_pred HHHCCCCEEEEC
Confidence 999999999943
No 428
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=78.97 E-value=1.5 Score=53.97 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
+.-.-.|.||..|+|.+++|++||.|+.||.|+.|+--
T Consensus 112 DK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 112 DKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred cceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 33344688999999999999999999999999999743
No 429
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=78.95 E-value=16 Score=45.75 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=64.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--h--------------------------------c
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--E--------------------------------G 1985 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--~--------------------------------g 1985 (2267)
.++.+.......++++.++. ..+-+|+|.-.+ .|+.|..-.. . .
T Consensus 32 Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (302)
T PRK08272 32 NAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQ 111 (302)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHH
Confidence 57889999999999998865 566777775533 3666653110 0 0
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEeeCc
Q 000092 1986 ILQAGSTIVENLRTYKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 1986 ilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
.++....++.++..+.+|+|+.|- |-+.|| .-.++. .|+ ++|.++|++|.-+.
T Consensus 112 ~~~~~~~~~~~l~~~~kPvIAaV~--G~a~GgG~~lala----cD~--~ias~~a~f~~pe~ 165 (302)
T PRK08272 112 MMSRFVRGFMSLWHAHKPTVAKVH--GYCVAGGTDIALH----CDQ--VIAADDAKIGYPPT 165 (302)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEc--cEeehhhHHHHHh----CCE--EEEeCCCEecCcch
Confidence 122233467778899999999996 666554 444444 477 89988888876544
No 430
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=78.79 E-value=29 Score=42.38 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=57.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh--h----chH-HHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--E----GIL-QAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~--~----gil-k~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
.++.++-..-..++++.+++ ..+-+|+|.-.+ .|+.|..-.. . +.. ..... +..+..+..|+|+.|-
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~kPvIaav~-- 102 (259)
T PRK06494 26 NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGG-LTSRFDLDKPIIAAVN-- 102 (259)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHH-HHHHhcCCCCEEEEEC--
Confidence 47888888999999998765 456677776654 4777763211 0 000 11111 3334577899999996
Q ss_pred CcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. +++. .|+ ++|.++++++.
T Consensus 103 G~a~GgG~~lala----cD~--ria~~~a~f~~ 129 (259)
T PRK06494 103 GVAMGGGFELALA----CDL--IVAAENATFAL 129 (259)
T ss_pred CEEecHHHHHHHh----CCE--EEEeCCCEEeC
Confidence 66666544 4444 366 66666666655
No 431
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=78.45 E-value=1.6 Score=52.60 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=52.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+...+.+.+ ...
T Consensus 86 ~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~e-A~~ 164 (243)
T PRK07854 86 PVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQ-ALA 164 (243)
T ss_pred CCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999987533 22 1223444455322 11112222222 347
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.|++|.+++ ..++.+.+.++
T Consensus 165 ~Glv~~v~~-~~~a~~~a~~l 184 (243)
T PRK07854 165 TGMANRIGT-LADAQAWAAEI 184 (243)
T ss_pred CCCcccccC-HHHHHHHHHHH
Confidence 899998865 23444444444
No 432
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=78.44 E-value=3.8 Score=46.00 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=36.6
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchH
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1781 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~ 1781 (2267)
.|+++++.|.|.++|.+++..||.+++.+++.+.+.|+.
T Consensus 58 kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~ 96 (161)
T cd00394 58 KPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPI 96 (161)
T ss_pred CCEEEEECChhHHHHHHHHhCCCEEEECCCCEEEEeeeE
Confidence 499999999999999999999999999999999999984
No 433
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=78.42 E-value=2.5 Score=54.96 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=43.9
Q ss_pred eEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 698 LLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 698 vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
|.-..|+.|+.-..=+.+..|++ .=...|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 62 V~v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 62 VQAATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred eEEEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 33344555554444445566776 34677999999999999 9999999999999999653
No 434
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=78.20 E-value=82 Score=38.62 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=61.5
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--h-----chHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--E-----GILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--~-----gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..++.++......++++.++. -.+-+|+|.-.+ .|+.|..-.. . ........++..+..+..|+|+.|-
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~-- 102 (258)
T PRK06190 25 RNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAIN-- 102 (258)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 357889999999999998865 456677776543 3666653110 0 0011234567788999999999996
Q ss_pred CcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+.. ++. .|+ ++|.++++++.
T Consensus 103 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 129 (258)
T PRK06190 103 GAAVTGGLELALA----CDI--LIASERARFAD 129 (258)
T ss_pred CEeecHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 766665544 333 466 66666666553
No 435
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=78.20 E-value=1.5 Score=52.96 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=31.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI 1775 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i 1775 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+
T Consensus 95 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f 128 (249)
T PRK05870 95 PLPTIAAVNGAAVGAGLNLALAADVRIAGPKALF 128 (249)
T ss_pred CCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEE
Confidence 4699999999999999999999999999998753
No 436
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=77.93 E-value=2.5 Score=47.55 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=35.5
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchH
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1781 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~ 1781 (2267)
.|+++++.|.|.|+|++++..||+++|.+++.+++..+.
T Consensus 59 ~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~ 97 (160)
T cd07016 59 GKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPS 97 (160)
T ss_pred CCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCc
Confidence 499999999999999999999999999999988877653
No 437
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=77.85 E-value=6.6 Score=51.60 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=31.1
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.+.|+||--|+|.++.|++||.|..|++|+++|
T Consensus 612 E~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 612 ENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred ccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 467999999999999999999999999999986
No 438
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=77.81 E-value=3.3 Score=52.97 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=40.7
Q ss_pred eeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 697 KLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 697 ~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
.+.-..|+.|+.-..=..-..+++-+ +..|.|+.+|.|..+ +++|+.|++||+|++|+.
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 34444455554332222344444433 458999999999999 999999999999999954
No 439
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.79 E-value=2 Score=54.38 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=32.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 124 pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~ 159 (360)
T TIGR03200 124 DKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQ 159 (360)
T ss_pred CCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeC
Confidence 469999999999999999999999999999876554
No 440
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=77.55 E-value=1.2e+02 Score=39.67 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=55.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hh----hch----HHH---HHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LF----EGI----LQA---GSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~----~gi----lk~---ga~iv~al~~~~vP~i~ 2006 (2267)
-++..+-...+.++++.+.. -.+-+|+|.-.+ .|..|..= +. .+. ..+ ...+...+..+.+|+|+
T Consensus 59 NALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA 138 (401)
T PLN02157 59 NALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVA 138 (401)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57889999999999988765 566677775433 36665421 11 110 111 12345678899999999
Q ss_pred EEccCCcCCch-hHhhhccccCCccceeecccccEEE
Q 000092 2007 YIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGN 2042 (2267)
Q Consensus 2007 vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~g 2042 (2267)
.|- |-+.|| .-+++.+ |+ .+|.++++++
T Consensus 139 ~v~--G~a~GGG~~Lal~c----D~--rvate~a~fa 167 (401)
T PLN02157 139 ILN--GVTMGGGTGVSIPG----TF--RVATDRTIFA 167 (401)
T ss_pred EEe--CeEeehhHHHHHhC----CE--EEEeCCCEEE
Confidence 996 655554 4444443 44 4444444433
No 441
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=77.47 E-value=1.5 Score=53.79 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=23.0
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.|.++..|.|.+++|++||+|++||+|++|+
T Consensus 3 ~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD 33 (305)
T PF00529_consen 3 IVQSLVGGIVTEILVKEGQRVKKGQVLARLD 33 (305)
T ss_dssp EE--SS-EEEEEE-S-TTEEE-TTSECEEE-
T ss_pred EEeCCCCeEEEEEEccCcCEEeCCCEEEEEE
Confidence 4789999999999999999999999999996
No 442
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=77.43 E-value=28 Score=42.92 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=59.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-------------h---chHHHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------------E---GILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-------------~---gilk~ga~iv~al~~~~vP 2003 (2267)
.++..+-.....++++.+++ -.+-+|+|.-.+ .|+.|..-.. . ...+....++..+..+.+|
T Consensus 32 Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 111 (276)
T PRK05864 32 NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQP 111 (276)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 57888888999999988765 456677776543 3666642110 0 0112234567788899999
Q ss_pred EEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2004 VFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+|+.|- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 112 vIaav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 144 (276)
T PRK05864 112 VIAAVN--GPAIGGGLCLALA----ADI--RVASSSAYFRA 144 (276)
T ss_pred EEEEEC--CEeehhHHHHHHh----CCE--EEeeCCCEecC
Confidence 999996 6666554 44444 366 66766665543
No 443
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=77.41 E-value=2.3 Score=53.27 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=32.1
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
+...|+||..|.|..+.+++|+.|.+|++++.|.-
T Consensus 203 ~~~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 203 KRTVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred hCcEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 34689999999999999999999999999999864
No 444
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=77.11 E-value=2.6 Score=54.57 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=59.7
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec---c-hHHHHHhhcc---ccccccccCCccccccccC
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---G-FSALNKLLGR---EVYSSHMQLGGPKIMATNG 1808 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt---G-p~al~~~lG~---evy~s~~~lGG~~i~~~nG 1808 (2267)
.|+|+.+-|.|+|||..++..||++|+.+++. |+|. | .-.+.++.|. ...-+...++|.+ ...-|
T Consensus 139 KPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~L~LTG~~i~a~e-A~~~G 217 (407)
T PLN02851 139 KPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVE-MIACG 217 (407)
T ss_pred CCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHHHHHhCCcCCHHH-HHHCC
Confidence 69999999999999999999999999998854 5552 2 2234444332 2222444555554 45799
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000092 1809 VVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1809 v~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
+++++++++. +..+..+|.-+
T Consensus 218 La~~~v~~~~--l~~l~~~l~~~ 238 (407)
T PLN02851 218 LATHYCLNAR--LPLIEERLGKL 238 (407)
T ss_pred CceeecCHhh--HHHHHHHHHhh
Confidence 9999997553 36677777654
No 445
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=76.59 E-value=31 Score=41.72 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=55.8
Q ss_pred ccCHHHHHHHHHHHHHhccc-C-CcEEEEecCC-CCCCchhh-hh----------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1943 VWFPDSATKTAQALMDFNRE-E-LPLFILANWR-GFSGGQRD-LF----------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1943 ~~~p~sa~K~arai~~a~~~-~-lPLv~l~d~~-Gf~~G~~~-e~----------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.+.++-.....++++.+... . ..+|++...+ -|+.|..- +. .........++.++..+..|+|+.|
T Consensus 22 al~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 101 (239)
T PLN02267 22 RLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAV 101 (239)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 47788888899998887653 3 3466655433 37666531 10 1112234456778889999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeeccc-ccEEE
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADR-TAKGN 2042 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p-~A~~g 2042 (2267)
- |-+.|| .-+++.+ |+ ++|.+ .++++
T Consensus 102 ~--G~a~GgG~~lalac----D~--ria~~~~a~f~ 129 (239)
T PLN02267 102 T--GHASAAGFILALSH----DY--VLMRKDRGVLY 129 (239)
T ss_pred C--CcchHHHHHHHHHC----CE--EEecCCCCeEe
Confidence 6 666665 4444443 55 66653 34443
No 446
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=76.35 E-value=3.3 Score=53.30 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=45.1
Q ss_pred eEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 698 LLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 698 vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
|.-..|+.++.-..-.....|++. .+..|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 38 V~v~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 38 ATVVTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred eEEEEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 333455666544445566777764 5779999999999998 9999999999999999543
No 447
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=76.09 E-value=3.2 Score=52.59 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=38.0
Q ss_pred cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 704 SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 704 ~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..+..+...+.++ |+ -...|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 32 ~~~~~~~t~~~~v--~~--~~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 32 RTDSAPSTDDAYI--DA--DVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred ccCceEecCCeEE--Ee--eeEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 3444444444333 33 2688999999999999 9999999999999999644
No 448
>PLN02921 naphthoate synthase
Probab=75.94 E-value=21 Score=45.16 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=64.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh-hh-----c--hHH--HHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL-FE-----G--ILQ--AGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e-~~-----g--ilk--~ga~iv~al~~~~vP~i~vI 2008 (2267)
-.+.+.-.....++++.++. ..+-+|+|.-.+ .|+.|..-. .. + ..+ ....+..++..+.+|+|+.|
T Consensus 89 Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaV 168 (327)
T PLN02921 89 NAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMV 168 (327)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57889999999999998865 567788887654 376665311 10 0 011 11235567888999999999
Q ss_pred ccCCcCCchhHh-hhccccCCccceeecccccEEEeeCc
Q 000092 2009 PMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2009 ~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
- |-+.||+.. ++. .|+ ++|.++++++.-++
T Consensus 169 n--G~a~GGG~~Lala----cD~--riA~~~A~f~~pe~ 199 (327)
T PLN02921 169 A--GYAVGGGHILHMV----CDL--TIAADNAVFGQTGP 199 (327)
T ss_pred C--CEEecHHHHHHHh----CCE--EEEeCCCEEeCccc
Confidence 6 666665544 443 477 88888888877443
No 449
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=75.89 E-value=3.5 Score=53.06 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=46.7
Q ss_pred eEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 698 LLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 698 vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
|.-..|+.|+....-+....|++-+ +..|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 4444666666666666777777554 677999999999999 9999999999999999643
No 450
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=75.51 E-value=2.1 Score=51.75 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=30.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP 1774 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~ 1774 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.
T Consensus 89 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~ 121 (248)
T PRK06072 89 DKIYISAINGVTAGACIGIALSTDFKFASRDVK 121 (248)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCE
Confidence 369999999999999999999999999999874
No 451
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=75.34 E-value=8.8 Score=45.99 Aligned_cols=125 Identities=19% Similarity=0.199 Sum_probs=91.3
Q ss_pred cCCcEEEEEEecccccCCCcchHHHHHHHHHHHHH--HHcCCCEEEEEcCCCCCCCchhhhhhhccccccCCCCCCCCcc
Q 000092 1602 PSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLA--CAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFN 1679 (2267)
Q Consensus 1602 ~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA--~~~~iP~I~l~~ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~ 1679 (2267)
.+|+.+.|+.+.- .|-+|-.++....++..-. ...+-|+|.+.|+.|=+++.-||++-+-+
T Consensus 27 ~~~~~iaVvg~~~---~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~-------------- 89 (234)
T PF06833_consen 27 EDGRFIAVVGDAN---HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQ-------------- 89 (234)
T ss_pred cCCcEEEEEecCC---CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHH--------------
Confidence 3678888887755 9999999999998777544 46789999999999999998888865411
Q ss_pred ccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEEEEEcCcccchhhh
Q 000092 1680 YVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY 1759 (2267)
Q Consensus 1680 ~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~iptis~vtg~~~G~gAy 1759 (2267)
-++.+.++ +...|..| -|+|++|-|++++|| +
T Consensus 90 -------alAhla~a----------------------------~a~AR~~G------------HpvI~Lv~G~A~SGa-F 121 (234)
T PF06833_consen 90 -------ALAHLAKA----------------------------YALARLAG------------HPVIGLVYGKAMSGA-F 121 (234)
T ss_pred -------HHHHHHHH----------------------------HHHHHHcC------------CCeEEEEecccccHH-H
Confidence 11111110 12233333 499999999999875 3
Q ss_pred h--hccCCeEEEecCCcceecchHHHHHhhcccc
Q 000092 1760 L--ARLGMRCIQRLDQPIILTGFSALNKLLGREV 1791 (2267)
Q Consensus 1760 l--~~lgd~~I~~~~a~i~ltGp~al~~~lG~ev 1791 (2267)
+ ...+|++++.++..+-.=|.++.-++|-+.+
T Consensus 122 LA~GlqA~rl~AL~ga~i~vM~~~s~ARVTk~~v 155 (234)
T PF06833_consen 122 LAHGLQANRLIALPGAMIHVMGKPSAARVTKRPV 155 (234)
T ss_pred HHHHHHhcchhcCCCCeeecCChHHhHHHhhcCH
Confidence 3 3459999999988888888888888777655
No 452
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=75.27 E-value=2 Score=54.51 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=34.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1779 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG 1779 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-
T Consensus 100 ~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe 137 (342)
T PRK05617 100 PKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPE 137 (342)
T ss_pred CCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCc
Confidence 36999999999999999999999999999988766644
No 453
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=75.14 E-value=2.4 Score=54.78 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-+.|+||+.|.|....+++|+.|.+|++++.|-
T Consensus 215 ~t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv 247 (390)
T PRK15136 215 RTKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV 247 (390)
T ss_pred CCEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence 368999999999999999999999999999884
No 454
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.03 E-value=2.6 Score=55.49 Aligned_cols=31 Identities=3% Similarity=0.103 Sum_probs=24.6
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.|.++..|.|.+++|++||+|++||+|+.|+
T Consensus 61 ~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld 91 (457)
T TIGR01000 61 KIQSTSNNAIKENYLKENKFVKKGDLLVVYD 91 (457)
T ss_pred EEEcCCCcEEEEEEcCCCCEecCCCEEEEEC
Confidence 4777888888888888888888888777774
No 455
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=74.83 E-value=3.2 Score=53.72 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=57.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec---c-hHHHHHhhcc---ccccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---G-FSALNKLLGR---EVYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt---G-p~al~~~lG~---evy~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|-|.|+|||.-++..||++|+.+++. |+|. | ..-|.+..|. +..-+...+.+.+ ...-
T Consensus 133 pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~i~A~e-A~~~ 211 (401)
T PLN02157 133 LKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAE-MLAC 211 (401)
T ss_pred CCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHHHHHcCCcCCHHH-HHHc
Confidence 369999999999999999999999999999864 4442 2 2235555553 1111223333333 3479
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
|+++.+++++. +..+..++.-+
T Consensus 212 GLv~~vVp~~~--l~~~~~~~~~i 233 (401)
T PLN02157 212 GLATHYIRSEE--IPVMEEQLKKL 233 (401)
T ss_pred CCceEEeCHhH--HHHHHHHHHHH
Confidence 99999997543 34555665544
No 456
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=74.41 E-value=3.8 Score=53.17 Aligned_cols=36 Identities=11% Similarity=0.350 Sum_probs=32.4
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
.-...|.||..|+|.+++|++||.|+.||+|++||.
T Consensus 85 K~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~ 120 (418)
T PTZ00144 85 KVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT 120 (418)
T ss_pred ceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcC
Confidence 334579999999999999999999999999999974
No 457
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=74.37 E-value=73 Score=38.93 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=60.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhhh--h-------hchH-------HHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDL--F-------EGIL-------QAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~e--~-------~gil-------k~ga~iv~al~~~~vP 2003 (2267)
..+.+.......++++.++. ..+-+|+|.-.++ |+.|..-. . .... .....++..+..+..|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp 104 (262)
T PRK07509 25 NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP 104 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 57889999999999998875 3566677755442 66665211 0 0001 1112345566789999
Q ss_pred EEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEeeC
Q 000092 2004 VFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
+|+.|- |-+.|| .-+++. .|+ ++|.++++++.-+
T Consensus 105 vIaav~--G~a~GgG~~lala----cD~--~ia~~~a~f~~pe 139 (262)
T PRK07509 105 VIAALE--GVCFGGGLQIALG----ADI--RIAAPDTKLSIME 139 (262)
T ss_pred EEEEEC--CeeecchHHHHHh----CCE--EEecCCCEeecch
Confidence 999997 666554 444444 477 7888887776643
No 458
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=74.26 E-value=47 Score=43.00 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=57.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hhh------chHHH---HHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE------GILQA---GSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~~------gilk~---ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.........++++.+.. ..+-+|+|.-.+ .|+.|..= ... ..... ...++..+..++.|+|+.|
T Consensus 33 Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV 112 (379)
T PLN02874 33 NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALV 112 (379)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 57888999999999998865 567788886544 47766521 100 01111 1123556788999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.|| .-+++.+ |+ .+|.++|+++.
T Consensus 113 ~--G~a~GgG~~Lalac----D~--ria~~~a~f~~ 140 (379)
T PLN02874 113 H--GLVMGGGAGLMVPM----KF--RVVTEKTVFAT 140 (379)
T ss_pred c--CeEEecHHHHHHhC----Ce--EEEeCCeEEec
Confidence 6 655554 4444443 55 55555544443
No 459
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=73.89 E-value=2.5 Score=50.46 Aligned_cols=87 Identities=13% Similarity=0.029 Sum_probs=55.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC-Ccce-------ec----chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.++ +.+. +. |...+.+.+|... .-+...+.+.+ ..
T Consensus 91 ~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~e-A~ 169 (229)
T PRK06213 91 PKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEE-AV 169 (229)
T ss_pred CCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHH-HH
Confidence 4699999999999999999999999999998 6432 22 1111233334321 11122222222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
..|++|.++++ .+..+.+.+|..-
T Consensus 170 ~~Glv~~vv~~-~~l~~~a~~~a~~ 193 (229)
T PRK06213 170 AAGFLDEVVPP-EQLLARAQAAARE 193 (229)
T ss_pred HCCCceeccCh-HHHHHHHHHHHHH
Confidence 68999999964 4556666666543
No 460
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=73.50 E-value=3.5 Score=51.67 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=30.4
Q ss_pred ceeeecCCC---cEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 724 CMPLLSPAS---GVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 724 ~~~l~ap~~---G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
...|.++.+ |+|..+ +++|+.|.+||+|++|++.
T Consensus 13 ~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 13 VVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 446779999 999999 9999999999999999765
No 461
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=73.04 E-value=4 Score=49.10 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=54.5
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhh-ccccccccccCCc--------------ccccccc
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLL-GREVYSSHMQLGG--------------PKIMATN 1807 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~l-G~evy~s~~~lGG--------------~~i~~~n 1807 (2267)
-|.|+.|-||.+|+||.+..|+|+|+..++ ..+.|-+.-|-+.- |--.|+=+.-+|. ++.++.+
T Consensus 108 Kplia~vNGPAIGlgasil~lcD~V~A~Dk-a~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~ 186 (266)
T KOG0016|consen 108 KPLVALVNGPAIGLGASILPLCDYVWASDK-AWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEK 186 (266)
T ss_pred CCEEEEecCCccchhhHHhhhhheEEeccc-eEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhc
Confidence 499999999999999999999999999854 33444332221110 1111111111221 3445568
Q ss_pred CceEEEecCcH---HHHHHHHHHHh
Q 000092 1808 GVVHLTVSDDL---EGISAILKWLS 1829 (2267)
Q Consensus 1808 Gv~d~~v~dd~---e~~~~i~~~Ls 1829 (2267)
|+++.+..+.. ++..+|+++..
T Consensus 187 glVskif~~~tf~~~v~~~ikq~s~ 211 (266)
T KOG0016|consen 187 GLVSKIFPAETFNEEVLKKIKQYSK 211 (266)
T ss_pred CchhhhcChHHHHHHHHHHHHHHhc
Confidence 99998887532 66778888776
No 462
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=72.87 E-value=13 Score=46.57 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCC-cEEEeecCCCCCc-------
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASWGGGGK------- 244 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~GgGGk------- 244 (2267)
-+....++++.|+.+|+... ..|+||+.+.++++|- -+|||+-.-.||+
T Consensus 27 ey~~~~ll~~~Gv~vp~g~v-----------------------A~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~S 83 (434)
T KOG2799|consen 27 EYRSAALLRKYGINVPLGYV-----------------------AKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDS 83 (434)
T ss_pred HHHHHHHHHHcCCCCCCCcc-----------------------cCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCc
Confidence 34558999999999999765 7899999999999984 4999997654443
Q ss_pred ----CeEEECCHHHHHHHHHHHHh
Q 000092 245 ----GIRKVHNDDEVRALFKQVQG 264 (2267)
Q Consensus 245 ----GIr~V~s~eEL~~a~~~~~~ 264 (2267)
||++|.+++|.++.-.++..
T Consensus 84 glkgGV~iVf~p~Eak~va~qmiG 107 (434)
T KOG2799|consen 84 GLKGGVKIVFSPQEAKAVASQMIG 107 (434)
T ss_pred CcCCceEEEeChHHHHHHHHHhhc
Confidence 48899999998887777653
No 463
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=72.57 E-value=34 Score=43.82 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=64.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-h-----------hhchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-L-----------FEGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e-----------~~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
-++..+.......+++.+.. ..+-+|+|.-.+ -|+.|..- + ........-.++..+..+..|+|+
T Consensus 50 NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIA 129 (360)
T TIGR03200 50 NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVIC 129 (360)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 47888999999999988764 678899998766 37776621 0 011112233567788889999999
Q ss_pred EEccCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |.+.||+.. ++. +|+ ++|.++|+++.
T Consensus 130 AVn--G~AiGGGleLALa----CDl--rIAse~A~Fg~ 159 (360)
T TIGR03200 130 RVN--GMRIGGGQEIGMA----ADF--TIAQDLANFGQ 159 (360)
T ss_pred EEC--CEeeeHHHHHHHh----CCE--EEEcCCCEEeC
Confidence 997 666665543 333 466 77777777666
No 464
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=71.34 E-value=3.4 Score=54.11 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=36.8
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEee
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~ 739 (2267)
.|.--+..|++||+|++||+|++-+. ....++.||.+|+|+.|.
T Consensus 39 ~g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 39 IGAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence 34445689999999999999999953 357899999999999883
No 465
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=71.27 E-value=2.3 Score=45.89 Aligned_cols=111 Identities=10% Similarity=0.165 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChh--hhhccEEEEccCCCCCCCccCH--HHHHHHHHHcCC
Q 000092 57 GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEH--IRIADQFVEVPGGTNNNNYANV--QLIVEMAEMTRV 132 (2267)
Q Consensus 57 G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~--vr~ADe~v~vp~~~~~~~Y~dv--d~Il~iA~~~~v 132 (2267)
...|+.+++-||+.|++|+ +++-. . +...| ...+|+++.++ +|.++ +.+.+-.++.
T Consensus 6 SHSALqIl~GAk~EGFrT~---------~ic~~-~--r~~~Y~~f~~iDe~i~~d------~f~di~~~~~q~~L~~~-- 65 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTI---------AICQK-G--REKFYRRFPFIDEVIVLD------SFSDILSEEVQEKLREM-- 65 (124)
T ss_dssp STTHHHHHHHHHHTT--EE---------EEEET-T--CHHHHHTTTT-SEEEEES------SCGHCCSHHHHHHHHHT--
T ss_pred chHHHHHhhhHHHcCCcEE---------EEECC-C--CcchhhhcCcCcEEEEeC------CHHHHHhHHHHHHHHHC--
Confidence 5689999999999998885 44442 2 22333 34799999995 34221 2444444444
Q ss_pred CEEEeCCCcCCCCCchHHHHHH-cCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 000092 133 DAVWPGWGHASEIPELPDTLST-KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2267)
Q Consensus 133 DaV~pG~G~~sEn~~la~~l~~-~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp 189 (2267)
++|+.-.|...+..- .+.+++ ..+++.|+-. .++.-.|...-+.++.++|||.|.
T Consensus 66 N~I~VPhgSfv~Y~G-~d~ie~~~~vP~FGNR~-lLrwEseR~~~~~lL~~AgI~~P~ 121 (124)
T PF06849_consen 66 NAIFVPHGSFVAYVG-YDRIENEFKVPIFGNRN-LLRWESERDKERNLLEKAGIPMPR 121 (124)
T ss_dssp TEEE--BTTHHHHH--HHHHHHT-SS-EES-CC-GGHCCCSHHHHHHHHHHTT-BB--
T ss_pred CeEEecCCCeeEeec-HHHHhhcCCCCeecChH-HHHhhhhhhhHHHHHHHcCCCCCc
Confidence 666644343333211 144555 7888988753 455555888888899999999997
No 466
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=71.21 E-value=50 Score=40.48 Aligned_cols=94 Identities=18% Similarity=0.105 Sum_probs=57.8
Q ss_pred CccC-HHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hhh-------------chHH-HHHHHHHHHhcCCC
Q 000092 1942 QVWF-PDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE-------------GILQ-AGSTIVENLRTYKQ 2002 (2267)
Q Consensus 1942 G~~~-p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~~-------------gilk-~ga~iv~al~~~~v 2002 (2267)
..+. +.-.....++++.++. ..+-+|+|.-.+ .|+.|..= ... .... ....++..+..+.+
T Consensus 25 Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 104 (266)
T PRK09245 25 NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEV 104 (266)
T ss_pred cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCC
Confidence 4566 4777888888888765 567777776543 36766531 100 0011 12346678888999
Q ss_pred CEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2003 PVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2003 P~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+|+.|- |-+.|| .-+++.+ |+ ++|.++++++.
T Consensus 105 pvIaav~--G~a~GgG~~lalac----D~--ria~~~a~f~~ 138 (266)
T PRK09245 105 PVIAAVN--GPAIGAGCDLACMC----DI--RIASETARFAE 138 (266)
T ss_pred CEEEEEC--CEeecHHHHHHHhC----CE--EEecCCCEEcc
Confidence 9999996 666654 4444443 65 66666665554
No 467
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=71.04 E-value=69 Score=43.90 Aligned_cols=86 Identities=10% Similarity=0.131 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcc-cCCcEEEE-ecC-CCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhh
Q 000092 1946 PDSATKTAQALMDFNR-EELPLFIL-ANW-RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVV 2022 (2267)
Q Consensus 1946 p~sa~K~arai~~a~~-~~lPLv~l-~d~-~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~ 2022 (2267)
+.+...+.++|+.|.+ .++-=|+| .|. +|. +. ..++...+.+..+.....|++++.- .-+-||-|++.
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~--~~-----~~~~ei~~ai~~fk~sgKpVvA~~~--~~~s~~YylAs 145 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGW--DS-----PHLVEIGSALSEFKDSGKPVYAYGT--NYSQGQYYLAS 145 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCC--CH-----HHHHHHHHHHHHHHhcCCeEEEEEc--cccchhhhhhh
Confidence 4577889999988866 56765555 453 341 11 1234456666677777899999764 32334444443
Q ss_pred ccccCCccceeecccccEEEeeCc
Q 000092 2023 DSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2023 ~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
. +|. +|+.|.+.+++.|-
T Consensus 146 ~----AD~--I~~~p~G~v~~~G~ 163 (584)
T TIGR00705 146 F----ADE--IILNPMGSVDLHGF 163 (584)
T ss_pred h----CCE--EEECCCceEEeece
Confidence 3 465 99999988777654
No 468
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=70.55 E-value=46 Score=40.73 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=57.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--h---c-hHH---H-HHHH--HHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--E---G-ILQ---A-GSTI--VENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--~---g-ilk---~-ga~i--v~al~~~~vP~i~v 2007 (2267)
.++.........++++.++. ..+-+|+|.-.+ -|+.|..-.. . + ... + ...+ +..+..+..|+|+.
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa 106 (263)
T PRK07799 27 NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAA 106 (263)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEE
Confidence 57889999999999998865 456667775543 3666653110 0 0 000 0 0111 22356788999999
Q ss_pred EccCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||++. ++. .|+ ++|.++++++.
T Consensus 107 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 135 (263)
T PRK07799 107 VE--GPAIAGGTEILQG----TDI--RVAGESAKFGI 135 (263)
T ss_pred EC--CeEeccHHHHHHh----CCE--EEecCCCEecC
Confidence 96 766665544 443 376 77777776655
No 469
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.48 E-value=6 Score=54.99 Aligned_cols=85 Identities=20% Similarity=0.106 Sum_probs=56.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-----------cchHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-----------TGFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-----------tGp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++.+++ .|..-+-..+|... .-+...+. ++-...
T Consensus 102 pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~-A~eA~~ 180 (714)
T TIGR02437 102 PVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENR-AEDALK 180 (714)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCC-HHHHHH
Confidence 369999999999999999999999999999876443 22233444555432 11111222 222457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.++++ .+..+.+++|.
T Consensus 181 ~GLvd~vv~~-~~l~~~a~~~a 201 (714)
T TIGR02437 181 VGAVDAVVTA-DKLGAAALQLL 201 (714)
T ss_pred CCCCcEeeCh-hHHHHHHHHHH
Confidence 9999999964 34555555554
No 470
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=70.20 E-value=56 Score=40.17 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=60.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-hhc--------------hHH----HHHHHHHHHhcC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FEG--------------ILQ----AGSTIVENLRTY 2000 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~~g--------------ilk----~ga~iv~al~~~ 2000 (2267)
.++.........++++.+.. ..+=+|+|...+ .|+.|..-. ... ... ..-.++.++..+
T Consensus 28 Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (272)
T PRK06210 28 NAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTAL 107 (272)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhC
Confidence 57889999999999998864 455567776543 366665311 000 000 012345678889
Q ss_pred CCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2001 KQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2001 ~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
++|+|+.|- |.+.|| .-.++. .|+ ++|.++++++.
T Consensus 108 ~kPvIaav~--G~a~GgG~~lala----~D~--~ia~~~a~f~~ 143 (272)
T PRK06210 108 RKPVIAAIN--GACAGIGLTHALM----CDV--RFAADGAKFTT 143 (272)
T ss_pred CCCEEEEEC--CeeehHHHHHHHh----CCE--EEEeCCCEEec
Confidence 999999996 666665 444444 477 88888888765
No 471
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=69.82 E-value=3.5e+02 Score=35.79 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhh--hchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhh
Q 000092 1945 FPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF--EGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVV 2022 (2267)
Q Consensus 1945 ~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~--~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~ 2022 (2267)
+..++..++++|+.++..+.=+|+++=-+| +.+|.. +. -.+++++.++++|+|+-|= .|
T Consensus 174 G~~A~~~i~~al~~~~~~~~Dviii~RGGG---S~eDL~~Fn~-----e~v~~ai~~~~~Pvis~IG--HE--------- 234 (438)
T PRK00286 174 GEGAAASIVAAIERANARGEDVLIVARGGG---SLEDLWAFND-----EAVARAIAASRIPVISAVG--HE--------- 234 (438)
T ss_pred CccHHHHHHHHHHHhcCCCCCEEEEecCCC---CHHHhhccCc-----HHHHHHHHcCCCCEEEecc--CC---------
Confidence 467789999999999987767888887655 445542 22 2478889999999999882 32
Q ss_pred ccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHH
Q 000092 2023 DSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDL 2073 (2267)
Q Consensus 2023 ~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l 2073 (2267)
.|+ +++|-=|-.-+--|-+|+++...+. .+.+.++|.-...|
T Consensus 235 -----~D~--tl~D~vAd~ra~TPtaaae~~~~~~--~e~~q~Ld~l~~rL 276 (438)
T PRK00286 235 -----TDF--TIADFVADLRAPTPTAAAELAVPDR--AELLQRLQQLQQRL 276 (438)
T ss_pred -----CCc--cHHHHhhhccCCChHHHHHHhCccH--HHHHHHHHHHHHHH
Confidence 244 4444444455556777787766543 33444544443333
No 472
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=69.45 E-value=3.8 Score=51.32 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=29.9
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|.++.+|+|..+ +++||.|.+||+|++|+..
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 45889999999999 9999999999999999654
No 473
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=69.00 E-value=39 Score=42.17 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=50.4
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc---EEEEccCCCCCCCccCHHHHH
Q 000092 49 HSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD---QFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~AD---e~v~vp~~~~~~~Y~dvd~Il 124 (2267)
.+|||.|+ |-++-..+..+.+.||+++ +. |--.+........ +++.. +..|-+.+-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vv-----------V~--DNL~~g~~~~v~~~~~~f~~g-------Di~D~~~L~ 60 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVV-----------VL--DNLSNGHKIALLKLQFKFYEG-------DLLDRALLT 60 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEE-----------EE--ecCCCCCHHHhhhccCceEEe-------ccccHHHHH
Confidence 37999985 9999999999999999985 44 3333333222222 44544 567889999
Q ss_pred HHHHHcCCCEEE
Q 000092 125 EMAEMTRVDAVW 136 (2267)
Q Consensus 125 ~iA~~~~vDaV~ 136 (2267)
++.+++++|+|+
T Consensus 61 ~vf~~~~idaVi 72 (329)
T COG1087 61 AVFEENKIDAVV 72 (329)
T ss_pred HHHHhcCCCEEE
Confidence 999999999998
No 474
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=68.80 E-value=68 Score=39.13 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=66.4
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCCC--------CCCchhhhh-------hchHHH---HHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWRG--------FSGGQRDLF-------EGILQA---GSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~G--------f~~G~~~e~-------~gilk~---ga~iv~al~~~~vP 2003 (2267)
-++..+...-+.++.+.++...-=.+++.-.-| |.++...-. ....+. .+..++++.+++.|
T Consensus 30 Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kp 109 (266)
T KOG0016|consen 30 NALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKP 109 (266)
T ss_pred ccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCC
Confidence 467778899999999999885442444433333 222221111 111112 22378899999999
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceee-------cccccEEEeeCccchhhhhcchh
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMY-------ADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~-------A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
+|+.|- |++-|-+-..++- .|. || ..|=|..|. .|||...+.|...
T Consensus 110 lia~vN--GPAIGlgasil~l---cD~--V~A~Dka~F~TPfa~lGq-~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 110 LVALVN--GPAIGLGASILPL---CDY--VWASDKAWFQTPFAKLGQ-SPEGCSSVTLPKI 162 (266)
T ss_pred EEEEec--CCccchhhHHhhh---hhe--EEeccceEEeccchhcCC-CCCcceeeeehHh
Confidence 999996 8888844333321 233 44 456666665 6899998887643
No 475
>PRK10949 protease 4; Provisional
Probab=68.77 E-value=74 Score=43.82 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcc-cCCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhc
Q 000092 1946 PDSATKTAQALMDFNR-EELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD 2023 (2267)
Q Consensus 1946 p~sa~K~arai~~a~~-~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~ 2023 (2267)
+.+.+.+.++|+.|.. .++- ||.=.|++|-. +.. .++...+.+..+.....|++++-- .-.-|+-|++..
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~-~~a-----~~~eI~~ai~~fk~sGKpVvA~~~--~~~s~~YyLASa 165 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGA-DQP-----SMQYIGKALREFRDSGKPVYAVGD--SYSQGQYYLASF 165 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCc-cHH-----HHHHHHHHHHHHHHhCCeEEEEec--Cccchhhhhhhh
Confidence 4567788899988865 5665 34445555421 111 233445566667777789988643 222234443333
Q ss_pred cccCCccceeecccccEEEeeCc
Q 000092 2024 SRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2024 ~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+|- +|+.|.+.+++.|.
T Consensus 166 ----AD~--I~l~P~G~v~~~G~ 182 (618)
T PRK10949 166 ----ANK--IYLSPQGVVDLHGF 182 (618)
T ss_pred ----CCE--EEECCCceEEEeee
Confidence 465 99999988887775
No 476
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=68.35 E-value=8.2 Score=50.22 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=37.6
Q ss_pred CceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 676 GRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 676 g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
..-+.++...-...|.||..|+|.++++++||.|..|+++++||..
T Consensus 34 d~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 34 EVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred CEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 3334444455566799999999999999999999999999999854
No 477
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=68.26 E-value=1.8e+02 Score=35.61 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=57.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--h----chHHH-HHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--E----GILQA-GSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--~----gilk~-ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..++++-.....++++.++. ..+=+|+|.-.+ .|+.|..-.. . ..... ...+...+-.+.+|+|+.|- |
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~--G 102 (254)
T PRK08259 25 NAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVS--G 102 (254)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEEC--C
Confidence 57899999999999998865 445566665433 3766653110 0 00000 01111223367899999996 6
Q ss_pred cCCchhHh-hhccccCCccceeecccccEEEee
Q 000092 2013 ELRGGAWV-VVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2013 ~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
-+.||+.. ++. .|+ ++|.++++++.-
T Consensus 103 ~a~GgG~~lala----cD~--~ia~~~a~f~~p 129 (254)
T PRK08259 103 YAVAGGLELALW----CDL--RVAEEDAVFGVF 129 (254)
T ss_pred EEEhHHHHHHHh----CCE--EEecCCCEecCc
Confidence 66665544 333 477 888888877653
No 478
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=68.23 E-value=3.9 Score=50.84 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=27.7
Q ss_pred EEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 715 YAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 715 l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
-+.+++ =+..|.+|.+|+| .+ +++|+.|.+||+|++|+..
T Consensus 14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 344554 4567999999999 77 9999999999999999765
No 479
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.20 E-value=5.9 Score=52.24 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=29.5
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|.++..|+|..+ |++||.|++||+|++|++.
T Consensus 60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 45679999999999 9999999999999999654
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=67.06 E-value=6 Score=55.04 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=55.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++-.||++|+.+++.+.+ . |..-+-+.+|.... -+...+.+ +=...
T Consensus 102 ~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A-~eA~~ 180 (715)
T PRK11730 102 PVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRA-EDALK 180 (715)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCH-HHHHH
Confidence 469999999999999999999999999999876433 1 22234444554321 11111221 22346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +....+++|.
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~a 201 (715)
T PRK11730 181 VGAVDAVVAPE-KLQEAALALL 201 (715)
T ss_pred CCCCeEecCHH-HHHHHHHHHH
Confidence 89999999753 4444555554
No 481
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=66.84 E-value=4.2e+02 Score=35.17 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=63.7
Q ss_pred cCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhh
Q 000092 1944 WFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVV 2022 (2267)
Q Consensus 1944 ~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~ 2022 (2267)
=+..++.-++++|+.++..+ .=+|+++--+| +.+|...= ---.+++++..+++|+|+-|= .|
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RGGG---s~eDL~~F---n~e~~~rai~~~~~Pvis~iG--He--------- 229 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRGGG---SLEDLWSF---NDEKVARAIFLSKIPIISAVG--HE--------- 229 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecCCC---CHHHhhhc---CcHHHHHHHHcCCCCEEEecC--cC---------
Confidence 34677888999999888744 67888887555 44443210 012468889999999999883 32
Q ss_pred ccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHH
Q 000092 2023 DSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKL 2070 (2267)
Q Consensus 2023 ~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~ 2070 (2267)
.|+ +++|--|-.-.--|-.|++....+. .+...++|...
T Consensus 230 -----~D~--ti~D~vAd~ra~TPtaaae~~~p~~--~el~qrLd~l~ 268 (432)
T TIGR00237 230 -----TDF--TISDFVADLRAPTPSAAAEIVSPNQ--DELLQRLDGFN 268 (432)
T ss_pred -----CCc--cHHHHhhhccCCCcHHHHHHhCccH--HHHHHHHHHHH
Confidence 344 5555555555666777888776543 34444444433
No 482
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=66.61 E-value=5.2 Score=47.12 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=35.1
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp 1780 (2267)
.|+++++.|.|.|+|.+++..||++++.+.+.++..|.
T Consensus 67 kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~ 104 (208)
T cd07023 67 KPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGV 104 (208)
T ss_pred CcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcE
Confidence 59999999999999999999999999999998877775
No 483
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=66.44 E-value=7.5 Score=50.37 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=36.3
Q ss_pred CcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 713 TPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 713 ~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.....+++. -+..|.++.+|+|..+ +++|+.|++||+|++|++.
T Consensus 55 ~~~G~v~a~-~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 55 ELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEEEEEE-EEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 344556653 3778999999999999 9999999999999999653
No 484
>PRK10949 protease 4; Provisional
Probab=66.43 E-value=1.2e+02 Score=41.95 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcc-cC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc
Q 000092 1948 SATKTAQALMDFNR-EE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR 2025 (2267)
Q Consensus 1948 sa~K~arai~~a~~-~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~ 2025 (2267)
++..+++.++.|.+ .+ --||.-+|+||-+....+ ...+.+..++....|+++++- +-.+-||-|++++.
T Consensus 348 ~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase-------~i~~~i~~~r~~gKPVvas~~-~~aASggY~iA~aa- 418 (618)
T PRK10949 348 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASE-------VIRAELAAARAAGKPVVVSMG-GMAASGGYWISTPA- 418 (618)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHH-------HHHHHHHHHHhcCCcEEEEEC-CCCccHHHHHHHhc-
Confidence 44566777776643 23 358888999993332211 223344445566789999874 22344566666654
Q ss_pred cCCccceeecccccEEEeeCc
Q 000092 2026 INSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2026 ~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
|. +||.|++..|.+|-
T Consensus 419 ---d~--I~a~p~t~tGSIGV 434 (618)
T PRK10949 419 ---NY--IVASPSTLTGSIGI 434 (618)
T ss_pred ---CE--EEECCCCceeeCcE
Confidence 65 99999877666554
No 485
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=66.30 E-value=8.1 Score=50.62 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=43.0
Q ss_pred EEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEeeC----CCCccCCCCEEEEEecCCC
Q 000092 699 LRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMA----EGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 699 v~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~~----~G~~v~~G~~La~l~~~~~ 759 (2267)
....|++||.|.+||+|..=|- -..++.||.+|+|..|.. .++-+ -.+...+++|.-
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~sgl--~~~~I~i~~d~~ 105 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPSGL--KELSIVIQGDGL 105 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcccC--cceEEEEcCcch
Confidence 4578999999999999999987 889999999999998842 23222 244555555543
No 486
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=66.06 E-value=10 Score=46.81 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=52.2
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcE--EEEEccc-c-ceeeecCCCcEEEEeeCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPY--AEVEVMK-M-CMPLLSPASGVLQFKMAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l--~~iEaMK-M-~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~ 755 (2267)
+..++||..| ++...++.||.|++||++ ..+=..= - ..+++||.+|+|.. ..+.-.|..|+.|+.+.
T Consensus 220 ~~~~~a~~~G-~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~-~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 220 PEWVRAPAGG-LFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIF-IRESPYVEQGDALAKVA 290 (292)
T ss_dssp CCEEESSSSE-EEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEES-ECTSSECTTTEEEEEEE
T ss_pred ceeecCCccE-EEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEE-eCcccccCCCCeEEEEe
Confidence 4578999999 568889999999999999 5443221 2 34799999997654 46777899999998874
No 487
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=65.88 E-value=5 Score=55.26 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCceecCCC---ceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 687 PSKLVAETP---CKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 687 ~~~l~APmP---G~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
|..|.=||. |.--+.+|++||+|.+||+|++-... +..+|.||.+|+|+.|
T Consensus 34 p~~~~ipl~qhiG~~~~~~V~~GD~V~~GQ~i~~~~~~-~s~~vhApvSG~V~~I 87 (695)
T PRK05035 34 PQRLVIPLKQHIGAEGELCVKVGDRVLKGQPLTQGDGR-MSLPVHAPTSGTVVAI 87 (695)
T ss_pred CCEEEEECccCCCCCCcceeCcCCEEcCCCEeeecCCC-ceeEEeCCCCeEEeee
Confidence 444444442 34456899999999999999976532 5689999999999987
No 488
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=65.85 E-value=1.7e+02 Score=41.16 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=57.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC--CCCCCchhh-hh---------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW--RGFSGGQRD-LF---------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~--~Gf~~G~~~-e~---------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
-.+.++......++++.++. ..+-.|+|.-. ..|+.|..- +. ....+....++.++..+.+|+|+.|
T Consensus 29 Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 108 (708)
T PRK11154 29 NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAI 108 (708)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47888999999999998865 45666666543 247776531 11 0111234456788999999999999
Q ss_pred ccCCcCCc-hhHhhhccccCCccceeecccc
Q 000092 2009 PMMAELRG-GAWVVVDSRINSDHIEMYADRT 2038 (2267)
Q Consensus 2009 ~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~ 2038 (2267)
- |-+.| |.-+++++ |+ .+|.++
T Consensus 109 ~--G~a~GgG~~Lalac----D~--ria~~~ 131 (708)
T PRK11154 109 H--GACLGGGLELALAC----HY--RVCTDD 131 (708)
T ss_pred C--CeeechHHHHHHhC----CE--EEEeCC
Confidence 6 66655 44445544 55 555554
No 489
>PRK04148 hypothetical protein; Provisional
Probab=65.76 E-value=18 Score=40.08 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=60.7
Q ss_pred hHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEE-------EEEeccCCCCCCh-hhhhccEE
Q 000092 34 EVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLV-------AMATPEDMRINAE-HIRIADQF 105 (2267)
Q Consensus 34 ~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v-------~~~t~~D~~~~a~-~vr~ADe~ 105 (2267)
.+.+|+.++-+...-+|+|++|-| .+..+.+.+.++|++|++.|..-+.| .-+.-.|...... .-+-||-.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEE
Confidence 355677665544444789999999 77777888889999998544222200 0011123332222 23445555
Q ss_pred EEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCC
Q 000092 106 VEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 106 v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G 140 (2267)
|.+-+.. .. ...|+++|++.++|.++.-.+
T Consensus 82 ysirpp~---el--~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 82 YSIRPPR---DL--QPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred EEeCCCH---HH--HHHHHHHHHHcCCCEEEEcCC
Confidence 5553221 12 567999999999999885533
No 490
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.49 E-value=9.2 Score=48.41 Aligned_cols=117 Identities=30% Similarity=0.490 Sum_probs=71.3
Q ss_pred cCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEE--------------------------EEcCCCCCCC
Q 000092 1602 PSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIY--------------------------LAANSGARIG 1655 (2267)
Q Consensus 1602 ~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~--------------------------l~~ssGARi~ 1655 (2267)
-.|-.++++|-| ||.+|+| .++-..|.+-++|+.. |.|+|| |.+
T Consensus 127 kkG~K~~LvcaD-TFRagAf--------DQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSG-Rh~ 196 (483)
T KOG0780|consen 127 KKGYKVALVCAD-TFRAGAF--------DQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSG-RHK 196 (483)
T ss_pred hcCCceeEEeec-ccccchH--------HHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCC-chh
Confidence 479999999999 8998875 4556667777777644 233333 332
Q ss_pred chhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccccccc
Q 000092 1656 VAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGA 1735 (2267)
Q Consensus 1656 ~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~ 1735 (2267)
-.++++ +++..+++.+. -.+.+++..+-||... -+
T Consensus 197 qe~sLf------------------------eEM~~v~~ai~-------Pd~vi~VmDasiGQaa--------------e~ 231 (483)
T KOG0780|consen 197 QEASLF------------------------EEMKQVSKAIK-------PDEIIFVMDASIGQAA--------------EA 231 (483)
T ss_pred hhHHHH------------------------HHHHHHHhhcC-------CCeEEEEEeccccHhH--------------HH
Confidence 111111 22333322222 2356678888888622 12
Q ss_pred ccccccCc-----eEEEEEcCcccchhhhhhccCCeEEEecCCcceecc
Q 000092 1736 YSRAYKET-----FTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1779 (2267)
Q Consensus 1736 ~s~a~~~i-----ptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG 1779 (2267)
-++|+++. -.||=+-|-+-||||..+ +...++||+|.|
T Consensus 232 Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSa------VaaTksPIiFIG 274 (483)
T KOG0780|consen 232 QARAFKETVDVGAVILTKLDGHAKGGGALSA------VAATKSPIIFIG 274 (483)
T ss_pred HHHHHHHhhccceEEEEecccCCCCCceeee------hhhhCCCEEEEe
Confidence 33444432 346667799999999775 677889999999
No 491
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=65.46 E-value=26 Score=44.46 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=57.2
Q ss_pred CCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh-ccEEEEccCCCCCCCccCHH
Q 000092 43 GGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI-ADQFVEVPGGTNNNNYANVQ 121 (2267)
Q Consensus 43 ~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~-ADe~v~vp~~~~~~~Y~dvd 121 (2267)
.+-++-++|+|.|-|-.+...++-++.+|.+|+ ++.. ..+.-....++ ||+++..- |.+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Vi---------a~~~--~~~K~e~a~~lGAd~~i~~~---------~~~ 221 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVI---------AITR--SEEKLELAKKLGADHVINSS---------DSD 221 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEE---------EEeC--ChHHHHHHHHhCCcEEEEcC---------Cch
Confidence 445567899999999999999999999998885 3333 22223335566 77776541 222
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcC-CeEeCCC
Q 000092 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKG-IIFLGPP 163 (2267)
Q Consensus 122 ~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~G-I~fiGPs 163 (2267)
.+-.+ ++. +|+|+-..+ ...-....+.|...| +.++|.+
T Consensus 222 ~~~~~-~~~-~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 222 ALEAV-KEI-ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhHHh-Hhh-CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 22222 222 899986654 111111234444455 3445544
No 492
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=65.45 E-value=5.3 Score=49.50 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=29.8
Q ss_pred ceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 724 CMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 724 ~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
+..|.||.+|+|..+ +++|+.|.+||+|++|+.
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~ 59 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDD 59 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence 457889999999998 999999999999999854
No 493
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=65.19 E-value=45 Score=41.55 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=58.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h---hc------------------------h---HH
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F---EG------------------------I---LQ 1988 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~---~g------------------------i---lk 1988 (2267)
.++.++-...+.++++.++. ..+=+|+|.-.+ .|+.|..=. . .. . ..
T Consensus 26 Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (288)
T PRK08290 26 NAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWE 105 (288)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHH
Confidence 57888999999999988764 566777775443 255554210 0 00 0 01
Q ss_pred HHHHHHHHHhcCCCCEEEEEccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 1989 AGSTIVENLRTYKQPVFVYIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 1989 ~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
....++..+..+.+|+|+.|- |-+.||+. +++. .|+ ++|.++++++.
T Consensus 106 ~~~~~~~~l~~~pkPvIAaVn--G~a~GgG~~lala----cD~--ria~e~a~f~~ 153 (288)
T PRK08290 106 VYLGMCRRWRDLPKPTIAQVQ--GACIAGGLMLAWV----CDL--IVASDDAFFSD 153 (288)
T ss_pred HHHHHHHHHHhCCCCEEEEEC--CEeeHHHHHHHHh----CCE--EEeeCCCEecC
Confidence 112344567889999999996 66666543 4444 366 77777766654
No 494
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.08 E-value=7.4 Score=50.27 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=30.9
Q ss_pred cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 723 MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 723 M~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
-...|.+|.+|+|..+ |++|+.|++|++|++++..+
T Consensus 42 ~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 42 NVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred CeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 3445679999999999 99999999999999997653
No 495
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=65.05 E-value=19 Score=40.55 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=23.7
Q ss_pred hcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 1998 RTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 1998 ~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
.....|+++++- +-+..|+|.+.+. +|- +||.|.+.+|.+|.-
T Consensus 3 ~~~~KpV~a~~~--~~~~S~~Y~lAs~---ad~--I~~~p~s~vgsiGv~ 45 (154)
T PF01343_consen 3 KASGKPVVAYAE--GYAASGAYYLASA---ADE--IYANPSSSVGSIGVS 45 (154)
T ss_dssp HHTT--EEEEEE--EEEETHHHHHHTT---SSE--EEE-TT-EEE---EE
T ss_pred cccCCeEEEEEC--CcchhHHHHHHHc---CCE--EEecCCCEEEEeChh
Confidence 456789999997 5445344444332 365 899999999988874
No 496
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=64.27 E-value=1.1e+02 Score=38.21 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h---------hc---hHHH-------H---HHHHH
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F---------EG---ILQA-------G---STIVE 1995 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~---------~g---ilk~-------g---a~iv~ 1995 (2267)
.++.++......++++.++. ..+-+|+|.-.+ .|+.|..=. . .+ ..+. . ...+.
T Consensus 27 NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (298)
T PRK12478 27 NTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFM 106 (298)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHH
Confidence 57889999999999998865 577788886543 366664210 0 00 0010 0 12455
Q ss_pred HHhcCCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEeeCcc
Q 000092 1996 NLRTYKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 1996 al~~~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
.+..+.+|+|+.|- |-+.|| .-+++. .|+ ++|.++|+++.-+..
T Consensus 107 ~l~~~~kPvIAaV~--G~a~GgG~~Lala----cD~--ria~~~A~f~~pe~~ 151 (298)
T PRK12478 107 AIWRASKPVIAQVH--GWCVGGASDYALC----ADI--VIASDDAVIGTPYSR 151 (298)
T ss_pred HHHhCCCCEEEEEc--cEEehhHHHHHHH----CCE--EEEcCCcEEeccccc
Confidence 68889999999996 666664 444444 487 899999988875543
No 497
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=64.07 E-value=64 Score=43.30 Aligned_cols=104 Identities=20% Similarity=0.387 Sum_probs=86.6
Q ss_pred ceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeee
Q 000092 649 GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLL 728 (2267)
Q Consensus 649 ~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ 728 (2267)
.+-+.+||+-+.+.+.+......++. ..-....+.++|-|||||+|+.+.|++|+.|++||+++++.||||||.|.
T Consensus 1072 eVfFeLNGqlR~i~v~Dk~a~ke~v~----~PkA~~~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~ 1147 (1176)
T KOG0369|consen 1072 EVFFELNGQLRSIRVADKEAAKEIVT----RPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVIS 1147 (1176)
T ss_pred EEEEEecCceeeEEeechhhhhhhcc----cccCCCCCcccccCCCCCceEEEEEecCceecCCCceEeeecceeeeeec
Confidence 35567788887777765444332222 22234567889999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 729 SPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 729 ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
||.+|+|+.+ +..|+.++.||++++||.
T Consensus 1148 sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1148 SPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred CCCCceeeEEEecCCCcccccceEEEccC
Confidence 9999999999 999999999999999873
No 498
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=63.63 E-value=7 Score=49.26 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=36.0
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc-ccceeeecC
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM-KMCMPLLSP 730 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM-KM~~~l~ap 730 (2267)
+...|+||..|.|..+.+.+|+.|.+|++++.|-.+ .|..++.-|
T Consensus 202 ~~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~~~~v~~~V~ 247 (331)
T PRK03598 202 QDTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTRPVWVRAYVD 247 (331)
T ss_pred hcCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCCceEEEEEEC
Confidence 457899999999999999999999999999998544 244443333
No 499
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=63.53 E-value=1e+02 Score=37.62 Aligned_cols=94 Identities=19% Similarity=0.138 Sum_probs=55.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--hhch-HHHHHHHHHH--HhcCCCCEEEEEccCCcC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FEGI-LQAGSTIVEN--LRTYKQPVFVYIPMMAEL 2014 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~~gi-lk~ga~iv~a--l~~~~vP~i~vI~~~g~~ 2014 (2267)
..+.+.-.....++++.+++ ..+-+|+|.-.+ .|+.|..-. ...- ...-...+.. ...+.+|+|+.|- |.+
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~--G~a 102 (254)
T PRK08252 25 NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVE--GYA 102 (254)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEEC--CEE
Confidence 57888999999999998864 467777776543 366665311 0000 0000111111 1367899999996 666
Q ss_pred Cc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2015 RG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2015 ~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.| |.-.++.+ |+ ++|.++++++.
T Consensus 103 ~GgG~~lalac----D~--~ia~~~a~f~~ 126 (254)
T PRK08252 103 LAGGFELALAC----DL--IVAARDAKFGL 126 (254)
T ss_pred ehHHHHHHHhC----CE--EEEeCCCEEeC
Confidence 55 44444443 66 67777766654
No 500
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=63.03 E-value=9.6 Score=52.97 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=0.0
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecC--Ccceec-----------chHHHHHhhc----cccccccccCCcccccc
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLD--QPIILT-----------GFSALNKLLG----REVYSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~--a~i~lt-----------Gp~al~~~lG----~evy~s~~~lGG~~i~~ 1805 (2267)
.|+|+.|.|.|+|+|..++-.||++|+.++ +.+.+. |...+-..+| .+..-+...+. ++-..
T Consensus 97 kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~-a~eA~ 175 (699)
T TIGR02440 97 IPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLR-AKQAL 175 (699)
T ss_pred CCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCC-HHHHH
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.-|++|.+++ +.+..+.+++|.
T Consensus 176 ~~GLV~~vv~-~~~l~~~a~~~A 197 (699)
T TIGR02440 176 KLGLVDDVVP-QSILLDTAVEMA 197 (699)
T ss_pred hCCCCcEecC-hhHHHHHHHHHH
Done!