Query 000092
Match_columns 2267
No_of_seqs 942 out of 7326
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k8x_A Acetyl-COA carboxylase; 100.0 6E-168 2E-172 1601.0 50.8 749 1495-2263 1-758 (758)
2 2x24_A Acetyl-COA carboxylase; 100.0 5E-154 2E-158 1487.6 48.3 756 1493-2264 18-786 (793)
3 3n6r_A Propionyl-COA carboxyla 100.0 1.1E-98 4E-103 992.5 52.1 632 47-755 1-681 (681)
4 3u9t_A MCC alpha, methylcroton 100.0 1.1E-97 4E-102 982.1 45.9 626 46-757 26-673 (675)
5 3jrx_A Acetyl-COA carboxylase 100.0 4E-96 1E-100 948.1 48.8 553 7-570 14-573 (587)
6 3glk_A Acetyl-COA carboxylase 100.0 9E-90 3.1E-94 886.6 43.1 514 29-553 21-540 (540)
7 1vrg_A Propionyl-COA carboxyla 100.0 4.2E-78 1.4E-82 766.9 38.2 475 1504-2150 14-510 (527)
8 3hbl_A Pyruvate carboxylase; T 100.0 2.4E-76 8.2E-81 812.1 58.6 447 45-552 1-453 (1150)
9 1on3_A Methylmalonyl-COA carbo 100.0 2.2E-77 7.5E-82 759.8 38.6 417 1586-2150 82-506 (523)
10 2bzr_A Propionyl-COA carboxyla 100.0 4.8E-77 1.6E-81 758.1 37.7 420 1586-2150 95-531 (548)
11 3iav_A Propionyl-COA carboxyla 100.0 6.3E-77 2.2E-81 752.2 37.1 418 1586-2150 84-513 (530)
12 3n6r_B Propionyl-COA carboxyla 100.0 3.1E-76 1.1E-80 744.8 40.5 412 1586-2149 92-513 (531)
13 1w96_A ACC, acetyl-coenzyme A 100.0 8.2E-75 2.8E-79 753.6 50.3 533 5-553 11-554 (554)
14 1pix_A Glutaconyl-COA decarbox 100.0 3.9E-76 1.3E-80 753.6 36.6 439 1586-2150 92-559 (587)
15 3gf3_A Glutaconyl-COA decarbox 100.0 3.8E-76 1.3E-80 750.1 35.7 443 1586-2150 93-561 (588)
16 3u9r_B MCC beta, methylcrotony 100.0 3.1E-75 1.1E-79 737.7 42.1 424 1586-2150 108-540 (555)
17 1x0u_A Hypothetical methylmalo 100.0 8E-75 2.7E-79 737.2 34.8 417 1586-2150 78-505 (522)
18 3ouz_A Biotin carboxylase; str 100.0 5.9E-71 2E-75 699.9 47.3 438 46-551 4-445 (446)
19 3va7_A KLLA0E08119P; carboxyla 100.0 8.8E-68 3E-72 727.9 37.4 441 44-552 27-471 (1236)
20 2qf7_A Pyruvate carboxylase pr 100.0 1.1E-65 3.7E-70 708.3 37.5 451 41-552 9-471 (1165)
21 2vpq_A Acetyl-COA carboxylase; 100.0 3.4E-62 1.2E-66 620.2 46.7 443 48-555 1-447 (451)
22 2dzd_A Pyruvate carboxylase; b 100.0 5.5E-62 1.9E-66 620.1 47.3 447 45-552 3-455 (461)
23 1ulz_A Pyruvate carboxylase N- 100.0 7.1E-62 2.4E-66 617.2 44.6 440 47-553 1-444 (451)
24 2w70_A Biotin carboxylase; lig 100.0 1.8E-61 6.1E-66 613.3 45.7 441 47-555 1-446 (449)
25 4dim_A Phosphoribosylglycinami 100.0 1.1E-45 3.9E-50 461.7 37.5 387 46-520 5-401 (403)
26 4ffl_A PYLC; amino acid, biosy 100.0 6.8E-43 2.3E-47 431.2 29.1 356 48-520 1-358 (363)
27 1a9x_A Carbamoyl phosphate syn 100.0 4.2E-42 1.4E-46 475.2 33.7 396 46-538 5-432 (1073)
28 3vot_A L-amino acid ligase, BL 100.0 3E-41 1E-45 425.2 34.0 395 46-527 3-419 (425)
29 1kjq_A GART 2, phosphoribosylg 100.0 2E-40 6.8E-45 412.5 40.2 378 47-521 10-391 (391)
30 2dwc_A PH0318, 433AA long hypo 100.0 5.9E-40 2E-44 414.3 37.1 390 47-522 18-416 (433)
31 3aw8_A PURK, phosphoribosylami 100.0 1.6E-39 5.4E-44 402.1 38.5 360 50-518 1-361 (369)
32 4e4t_A Phosphoribosylaminoimid 100.0 4.2E-39 1.5E-43 405.3 38.9 372 47-519 34-416 (419)
33 3k5i_A Phosphoribosyl-aminoimi 100.0 1.1E-38 3.9E-43 399.6 35.3 371 47-517 23-398 (403)
34 3ax6_A Phosphoribosylaminoimid 100.0 1.7E-37 5.7E-42 385.4 37.5 368 48-521 1-372 (380)
35 2yw2_A Phosphoribosylamine--gl 100.0 9.5E-37 3.3E-41 383.9 38.1 376 50-521 2-407 (424)
36 3vmm_A Alanine-anticapsin liga 100.0 1.7E-37 5.7E-42 396.1 31.0 376 81-521 52-468 (474)
37 2ip4_A PURD, phosphoribosylami 100.0 3.3E-36 1.1E-40 378.4 39.0 374 50-521 2-400 (417)
38 3eth_A Phosphoribosylaminoimid 100.0 1.1E-36 3.7E-41 375.0 33.3 337 48-518 1-340 (355)
39 2z04_A Phosphoribosylaminoimid 100.0 8.4E-37 2.9E-41 377.0 30.3 358 48-521 1-359 (365)
40 2qk4_A Trifunctional purine bi 100.0 1.9E-36 6.3E-41 384.7 33.9 382 47-521 23-436 (452)
41 3q2o_A Phosphoribosylaminoimid 100.0 5.2E-36 1.8E-40 373.6 37.2 296 47-398 13-309 (389)
42 3orq_A N5-carboxyaminoimidazol 100.0 1.7E-35 5.9E-40 367.8 34.7 294 46-397 10-304 (377)
43 1vkz_A Phosphoribosylamine--gl 100.0 2.6E-35 8.8E-40 370.2 33.3 370 47-521 14-403 (412)
44 2yrx_A Phosphoribosylglycinami 100.0 3.2E-34 1.1E-38 364.2 37.5 374 48-521 21-426 (451)
45 2xcl_A Phosphoribosylamine--gl 100.0 2.4E-34 8.3E-39 361.8 33.3 374 50-521 2-405 (422)
46 3mjf_A Phosphoribosylamine--gl 100.0 2E-33 6.9E-38 355.0 39.8 384 48-521 3-415 (431)
47 3lp8_A Phosphoribosylamine-gly 100.0 7E-33 2.4E-37 351.1 40.7 384 48-521 21-430 (442)
48 1a9x_A Carbamoyl phosphate syn 100.0 1.1E-32 3.7E-37 381.6 35.2 304 47-397 558-875 (1073)
49 2pn1_A Carbamoylphosphate synt 100.0 2.1E-31 7.2E-36 323.9 26.4 290 49-397 5-300 (331)
50 4fu0_A D-alanine--D-alanine li 100.0 6.5E-30 2.2E-34 315.5 19.2 242 123-389 89-342 (357)
51 1ehi_A LMDDL2, D-alanine:D-lac 100.0 2.1E-27 7.2E-32 295.2 25.7 234 129-389 91-346 (377)
52 4eg0_A D-alanine--D-alanine li 99.9 3.7E-27 1.3E-31 286.0 24.2 278 46-391 11-311 (317)
53 2i87_A D-alanine-D-alanine lig 99.9 2.1E-27 7.2E-32 293.7 19.5 235 128-390 84-337 (364)
54 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 1.4E-26 4.7E-31 277.9 25.9 273 47-391 1-302 (306)
55 3e5n_A D-alanine-D-alanine lig 99.9 4.5E-27 1.6E-31 293.0 20.6 234 129-390 115-365 (386)
56 2f9i_A Acetyl-coenzyme A carbo 99.9 2.1E-27 7.1E-32 287.5 15.9 248 1807-2152 37-297 (327)
57 2f9y_A Acetyl-COA carboxylase, 99.9 1.9E-27 6.5E-32 288.5 14.7 246 1809-2152 56-311 (339)
58 3i12_A D-alanine-D-alanine lig 99.9 3.3E-26 1.1E-30 283.3 25.3 233 129-390 96-346 (364)
59 2f9i_B Acetyl-coenzyme A carbo 99.9 1.8E-26 6.3E-31 274.2 19.5 191 1858-2148 59-278 (285)
60 3r5x_A D-alanine--D-alanine li 99.9 3.1E-26 1E-30 275.9 21.6 270 50-391 5-295 (307)
61 1e4e_A Vancomycin/teicoplanin 99.9 1.7E-26 5.7E-31 283.4 17.0 232 129-391 88-337 (343)
62 2f9i_B Acetyl-coenzyme A carbo 99.9 1.9E-26 6.6E-31 274.0 14.4 186 1572-1832 95-281 (285)
63 3se7_A VANA; alpha-beta struct 99.9 3.9E-26 1.3E-30 280.6 15.6 232 129-390 88-336 (346)
64 3tqt_A D-alanine--D-alanine li 99.9 5.2E-25 1.8E-29 273.1 23.2 233 130-390 97-347 (372)
65 3k3p_A D-alanine--D-alanine li 99.9 6E-25 2E-29 273.5 22.8 235 131-390 119-367 (383)
66 3lwb_A D-alanine--D-alanine li 99.9 2.2E-25 7.6E-30 276.7 17.7 230 131-389 109-360 (373)
67 2fb9_A D-alanine:D-alanine lig 99.9 4.9E-25 1.7E-29 268.3 20.4 231 129-390 74-316 (322)
68 1uc8_A LYSX, lysine biosynthes 99.9 4.6E-25 1.6E-29 260.8 17.6 270 51-394 2-278 (280)
69 2f9y_B Acetyl-coenzyme A carbo 99.9 1.4E-25 4.9E-30 269.2 13.3 223 1518-1834 48-280 (304)
70 2r85_A PURP protein PF1517; AT 99.9 1.4E-23 4.8E-28 254.8 21.0 260 49-372 3-292 (334)
71 2pvp_A D-alanine-D-alanine lig 99.9 1.8E-23 6.1E-28 259.1 20.0 232 131-397 107-350 (367)
72 2r7k_A 5-formaminoimidazole-4- 99.9 1.2E-22 4E-27 250.6 19.8 279 34-375 6-322 (361)
73 3df7_A Putative ATP-grAsp supe 99.9 2.2E-21 7.6E-26 234.7 16.8 217 115-398 57-277 (305)
74 2pbz_A Hypothetical protein; N 99.8 4.3E-22 1.5E-26 241.5 7.5 249 50-371 4-272 (320)
75 2f9y_B Acetyl-coenzyme A carbo 99.8 6.9E-20 2.4E-24 220.1 15.7 197 1853-2149 44-276 (304)
76 3ln7_A Glutathione biosynthesi 99.7 1.5E-18 5.1E-23 230.4 11.4 240 118-392 433-753 (757)
77 1gsa_A Glutathione synthetase; 99.7 1E-17 3.5E-22 201.1 13.8 284 50-393 3-311 (316)
78 1z2n_X Inositol 1,3,4-trisphos 99.7 3.6E-16 1.2E-20 189.6 16.8 199 131-371 55-302 (324)
79 2f9i_A Acetyl-coenzyme A carbo 99.6 1.7E-15 5.7E-20 183.8 18.1 198 1514-1817 68-277 (327)
80 3ln6_A Glutathione biosynthesi 99.6 1.1E-16 3.7E-21 213.3 8.2 243 119-392 429-747 (750)
81 1wr2_A Hypothetical protein PH 99.6 2.3E-16 7.9E-21 184.3 9.3 172 171-369 20-218 (238)
82 1pix_A Glutaconyl-COA decarbox 99.6 2.9E-15 9.8E-20 192.9 18.6 160 1858-2057 59-233 (587)
83 2f9y_A Acetyl-COA carboxylase, 99.6 1.7E-15 5.9E-20 184.1 15.1 196 1515-1816 83-290 (339)
84 2dn8_A Acetyl-COA carboxylase 99.6 6.6E-16 2.3E-20 157.2 9.6 97 673-770 3-100 (100)
85 3gf3_A Glutaconyl-COA decarbox 99.6 1.8E-15 6.2E-20 194.0 14.9 152 1858-2049 60-223 (588)
86 2bzr_A Propionyl-COA carboxyla 99.6 4.7E-15 1.6E-19 189.9 18.6 147 1858-2048 55-221 (548)
87 1on3_A Methylmalonyl-COA carbo 99.6 3.6E-15 1.2E-19 190.5 17.2 147 1858-2048 42-207 (523)
88 1vrg_A Propionyl-COA carboxyla 99.6 4E-15 1.4E-19 190.2 16.0 148 1858-2049 45-212 (527)
89 1x0u_A Hypothetical methylmalo 99.6 7.1E-15 2.4E-19 187.9 17.3 147 1858-2048 38-205 (522)
90 3iav_A Propionyl-COA carboxyla 99.6 5.2E-15 1.8E-19 188.3 15.2 148 1858-2049 44-211 (530)
91 3n6r_B Propionyl-COA carboxyla 99.6 2.1E-14 7.1E-19 182.7 18.4 147 1858-2048 52-218 (531)
92 3u9r_B MCC beta, methylcrotony 99.5 6.4E-14 2.2E-18 178.7 17.4 152 1858-2047 72-237 (555)
93 1i7n_A Synapsin II; synapse, p 99.5 1.1E-12 3.7E-17 158.4 21.4 217 131-390 68-302 (309)
94 1pk8_A RAT synapsin I; ATP bin 99.4 2.4E-12 8.2E-17 159.5 20.9 221 131-391 180-415 (422)
95 2cqy_A Propionyl-COA carboxyla 99.4 3.3E-14 1.1E-18 144.9 3.5 98 168-288 4-107 (108)
96 2p0a_A Synapsin-3, synapsin II 99.4 2.3E-12 8E-17 157.2 19.0 219 131-392 85-321 (344)
97 2kcc_A Acetyl-COA carboxylase 99.4 2.1E-13 7.2E-18 134.5 8.0 77 684-760 2-78 (84)
98 2q7d_A Inositol-tetrakisphosph 99.4 9.2E-13 3.1E-17 161.9 13.9 174 156-369 101-312 (346)
99 3bg3_A Pyruvate carboxylase, m 99.3 3.2E-12 1.1E-16 168.5 9.1 118 613-755 594-718 (718)
100 2fp4_B Succinyl-COA ligase [GD 99.3 4.7E-12 1.6E-16 157.8 9.3 166 172-369 4-210 (395)
101 3crk_C Dihydrolipoyllysine-res 99.3 6.5E-12 2.2E-16 124.6 8.5 67 692-758 16-84 (87)
102 1z6h_A Biotin/lipoyl attachmen 99.3 8.4E-12 2.9E-16 118.8 8.5 69 689-757 1-70 (72)
103 1bdo_A Acetyl-COA carboxylase; 99.3 4.9E-12 1.7E-16 123.3 6.8 70 686-755 3-80 (80)
104 2dnc_A Pyruvate dehydrogenase 99.2 1E-11 3.5E-16 125.9 8.8 67 693-759 19-87 (98)
105 1k8m_A E2 component of branche 99.2 1.2E-11 4E-16 124.4 8.2 68 692-759 15-83 (93)
106 2nu8_B SCS-beta, succinyl-COA 99.2 1.6E-11 5.5E-16 152.9 10.0 167 172-370 4-204 (388)
107 1ghj_A E2, E2, the dihydrolipo 99.2 1.3E-11 4.3E-16 120.1 6.6 66 691-756 11-77 (79)
108 2x24_A Acetyl-COA carboxylase; 99.2 1.2E-10 4.1E-15 152.7 15.0 164 1858-2050 51-301 (793)
109 1dcz_A Transcarboxylase 1.3S s 99.2 6.2E-11 2.1E-15 114.4 9.1 71 685-755 6-77 (77)
110 2d5d_A Methylmalonyl-COA decar 99.2 6.1E-11 2.1E-15 113.3 8.7 69 687-755 5-74 (74)
111 2ejm_A Methylcrotonoyl-COA car 99.2 5.3E-11 1.8E-15 120.9 8.8 77 685-761 12-89 (99)
112 2dne_A Dihydrolipoyllysine-res 99.1 3.3E-11 1.1E-15 124.3 6.8 66 693-758 19-86 (108)
113 2qf7_A Pyruvate carboxylase pr 99.1 6.5E-11 2.2E-15 164.8 11.8 103 650-755 1061-1164(1165)
114 2l5t_A Lipoamide acyltransfera 99.1 3.2E-11 1.1E-15 116.6 6.2 65 691-755 11-76 (77)
115 2jku_A Propionyl-COA carboxyla 99.1 1.2E-11 3.9E-16 124.6 2.9 73 683-755 21-94 (94)
116 1y8o_B Dihydrolipoyllysine-res 99.1 8.6E-11 2.9E-15 124.4 8.9 65 694-758 40-106 (128)
117 2k7v_A Dihydrolipoyllysine-res 99.1 2E-11 7E-16 120.4 2.5 70 689-758 4-74 (85)
118 3va7_A KLLA0E08119P; carboxyla 99.1 7.1E-11 2.4E-15 164.4 8.5 67 688-754 1168-1235(1236)
119 1gjx_A Pyruvate dehydrogenase; 99.1 3.5E-11 1.2E-15 117.5 3.0 68 690-757 10-78 (81)
120 1qjo_A Dihydrolipoamide acetyl 99.1 1.4E-10 4.9E-15 112.8 6.8 64 695-758 14-78 (80)
121 1pmr_A Dihydrolipoyl succinylt 99.1 1.3E-11 4.3E-16 120.5 -0.9 65 692-756 13-78 (80)
122 1iyu_A E2P, dihydrolipoamide a 99.0 3.9E-10 1.3E-14 109.6 8.0 63 695-758 13-76 (79)
123 3t7a_A Inositol pyrophosphate 98.8 3.9E-10 1.3E-14 133.1 0.3 212 132-372 58-294 (330)
124 1zko_A Glycine cleavage system 98.8 2.1E-09 7.2E-14 114.7 5.3 74 688-761 37-119 (136)
125 3dva_I Dihydrolipoyllysine-res 98.7 1.4E-09 4.9E-14 136.7 0.0 65 695-759 16-81 (428)
126 3k8x_A Acetyl-COA carboxylase; 98.7 5.3E-08 1.8E-12 126.9 14.0 140 1884-2051 73-289 (758)
127 3ufx_B Succinyl-COA synthetase 98.7 6.1E-08 2.1E-12 121.1 12.9 99 172-293 4-110 (397)
128 1zy8_K Pyruvate dehydrogenase 98.6 4.2E-09 1.4E-13 122.0 0.0 64 694-757 16-81 (229)
129 2k32_A A; NMR {Campylobacter j 98.5 6.5E-08 2.2E-12 100.7 6.2 71 689-759 3-104 (116)
130 1hpc_A H protein of the glycin 98.4 1.6E-07 5.4E-12 99.8 6.3 74 688-761 28-110 (131)
131 1onl_A Glycine cleavage system 98.3 5.4E-07 1.8E-11 95.5 6.9 74 688-761 28-110 (128)
132 3a7l_A H-protein, glycine clea 98.3 5E-07 1.7E-11 95.7 5.2 74 688-761 29-111 (128)
133 3viv_A 441AA long hypothetical 97.5 0.00046 1.6E-08 80.2 13.1 91 1941-2047 16-109 (230)
134 2f1m_A Acriflavine resistance 97.4 7.1E-05 2.4E-09 88.9 3.5 71 688-758 23-167 (277)
135 3ne5_B Cation efflux system pr 97.3 0.00024 8.1E-09 89.6 6.8 71 687-757 121-241 (413)
136 2f6i_A ATP-dependent CLP prote 97.3 0.00097 3.3E-08 76.8 11.2 93 1941-2049 45-139 (215)
137 3lnn_A Membrane fusion protein 97.2 0.00023 7.8E-09 87.7 6.4 72 687-758 57-206 (359)
138 3klr_A Glycine cleavage system 97.2 0.0003 1E-08 74.1 6.2 71 690-760 26-105 (125)
139 3fpp_A Macrolide-specific effl 97.2 0.00026 8.8E-09 86.6 6.1 72 687-758 31-191 (341)
140 1y7o_A ATP-dependent CLP prote 97.2 0.0026 8.9E-08 73.4 13.7 93 1941-2049 51-146 (218)
141 3qwd_A ATP-dependent CLP prote 97.1 0.0031 1.1E-07 72.0 12.8 94 1940-2049 32-128 (203)
142 2cby_A ATP-dependent CLP prote 96.9 0.0049 1.7E-07 70.7 13.1 93 1941-2049 33-128 (208)
143 1vf7_A Multidrug resistance pr 96.9 0.00035 1.2E-08 86.6 3.4 71 688-758 44-174 (369)
144 3mxu_A Glycine cleavage system 96.9 0.001 3.5E-08 71.3 6.2 47 692-738 50-97 (143)
145 3tzu_A GCVH, glycine cleavage 96.9 0.00082 2.8E-08 71.7 5.2 48 691-738 44-92 (137)
146 3mwd_A ATP-citrate synthase; A 96.8 0.0069 2.4E-07 76.2 13.7 107 174-298 9-134 (425)
147 1tg6_A Putative ATP-dependent 96.8 0.0082 2.8E-07 71.3 13.5 93 1941-2049 88-183 (277)
148 3p2l_A ATP-dependent CLP prote 96.8 0.0062 2.1E-07 69.4 11.9 93 1941-2049 36-131 (201)
149 1yg6_A ATP-dependent CLP prote 96.7 0.0075 2.6E-07 68.3 12.5 93 1941-2049 32-127 (193)
150 3cdx_A Succinylglutamatedesucc 96.6 0.003 1E-07 78.1 8.7 70 688-759 268-341 (354)
151 4dk0_A Putative MACA; alpha-ha 96.6 0.00036 1.2E-08 86.1 0.1 36 686-721 31-66 (369)
152 2gpr_A Glucose-permease IIA co 96.5 0.00094 3.2E-08 72.9 3.1 66 687-756 7-112 (154)
153 1ax3_A Iiaglc, glucose permeas 96.3 0.0018 6.2E-08 71.2 3.5 70 684-757 9-118 (162)
154 3pff_A ATP-citrate synthase; p 96.2 0.015 5.1E-07 78.3 12.5 111 174-298 9-134 (829)
155 3tig_A TTL protein; ATP-grAsp, 96.1 0.012 4.2E-07 72.8 10.1 153 229-393 146-359 (380)
156 3na6_A Succinylglutamate desuc 96.0 0.012 4.2E-07 71.9 9.3 70 686-757 256-329 (331)
157 1f3z_A EIIA-GLC, glucose-speci 96.0 0.0031 1.1E-07 69.2 3.5 65 688-756 13-117 (161)
158 3hgb_A Glycine cleavage system 96.0 0.0074 2.5E-07 65.5 6.2 46 693-738 56-102 (155)
159 4gm2_A ATP-dependent CLP prote 96.0 0.023 7.8E-07 64.9 10.5 105 1940-2050 33-140 (205)
160 3bf0_A Protease 4; bacterial, 95.8 0.19 6.4E-06 66.2 19.6 87 1945-2046 320-409 (593)
161 3n6r_A Propionyl-COA carboxyla 95.6 0.019 6.6E-07 76.6 9.2 106 613-719 541-681 (681)
162 3viv_A 441AA long hypothetical 95.5 0.037 1.3E-06 64.3 9.9 40 1742-1781 67-109 (230)
163 3fmc_A Putative succinylglutam 94.8 0.035 1.2E-06 68.9 7.6 68 687-756 290-363 (368)
164 2dn8_A Acetyl-COA carboxylase 94.3 0.02 7E-07 57.9 3.2 60 712-772 5-65 (100)
165 3u9t_A MCC alpha, methylcroton 94.2 0.031 1.1E-06 74.6 5.3 35 686-720 638-672 (675)
166 3hbl_A Pyruvate carboxylase; T 92.9 0.11 3.9E-06 72.9 7.8 104 650-757 1044-1148(1150)
167 3r6h_A Enoyl-COA hydratase, EC 92.8 0.79 2.7E-05 53.2 13.4 94 1942-2043 26-130 (233)
168 1qjo_A Dihydrolipoamide acetyl 92.4 0.078 2.7E-06 51.1 3.7 36 685-720 41-76 (80)
169 4di1_A Enoyl-COA hydratase ECH 91.9 3.6 0.00012 49.0 17.9 94 1942-2043 45-150 (277)
170 3bg3_A Pyruvate carboxylase, m 91.8 0.051 1.7E-06 72.5 2.1 105 606-719 614-718 (718)
171 2l5t_A Lipoamide acyltransfera 91.7 0.099 3.4E-06 50.0 3.4 34 687-720 44-77 (77)
172 3hp0_A Putative polyketide bio 91.4 1.1 3.8E-05 53.1 12.7 88 1742-1830 100-201 (267)
173 3rst_A Signal peptide peptidas 91.2 0.66 2.3E-05 54.1 10.4 84 1948-2046 30-117 (240)
174 1z6h_A Biotin/lipoyl attachmen 91.2 0.18 6.3E-06 47.3 4.6 46 726-772 1-47 (72)
175 1bdo_A Acetyl-COA carboxylase; 91.1 0.13 4.3E-06 49.7 3.5 32 688-719 49-80 (80)
176 2qj8_A MLR6093 protein; struct 91.1 0.34 1.2E-05 59.2 8.3 66 689-756 259-328 (332)
177 3myb_A Enoyl-COA hydratase; ss 91.1 6.8 0.00023 46.8 19.3 94 1942-2043 48-154 (286)
178 3l3s_A Enoyl-COA hydratase/iso 91.1 5.6 0.00019 46.9 18.4 94 1942-2043 28-139 (263)
179 2kcc_A Acetyl-COA carboxylase 90.9 0.14 4.8E-06 50.1 3.7 46 726-772 7-53 (84)
180 3pea_A Enoyl-COA hydratase/iso 90.7 5.9 0.0002 46.6 18.1 94 1942-2043 27-133 (261)
181 2d5d_A Methylmalonyl-COA decar 90.7 0.23 7.9E-06 46.7 4.9 47 725-772 6-53 (74)
182 3lke_A Enoyl-COA hydratase; ny 90.4 0.21 7.3E-06 59.1 5.3 89 1742-1831 101-204 (263)
183 3isa_A Putative enoyl-COA hydr 90.4 1.6 5.4E-05 51.4 12.6 95 1941-2043 28-133 (254)
184 1iyu_A E2P, dihydrolipoamide a 90.4 0.18 6.1E-06 48.5 3.8 34 687-720 41-74 (79)
185 1dcz_A Transcarboxylase 1.3S s 90.3 0.25 8.7E-06 47.0 4.8 48 724-772 8-56 (77)
186 1dci_A Dienoyl-COA isomerase; 90.3 0.16 5.6E-06 60.3 4.3 85 1742-1827 107-207 (275)
187 3kqf_A Enoyl-COA hydratase/iso 90.2 9.1 0.00031 45.2 19.1 96 1941-2044 30-138 (265)
188 3sll_A Probable enoyl-COA hydr 89.9 8 0.00027 46.3 18.5 96 1942-2045 46-160 (290)
189 4fzw_C 1,2-epoxyphenylacetyl-C 89.9 16 0.00053 43.4 20.8 95 1942-2044 37-147 (274)
190 3bf0_A Protease 4; bacterial, 89.9 1.1 3.9E-05 58.9 12.0 87 1947-2048 70-159 (593)
191 1ghj_A E2, E2, the dihydrolipo 89.7 0.18 6.1E-06 48.5 3.2 34 687-720 44-77 (79)
192 3hrx_A Probable enoyl-COA hydr 89.6 17 0.0006 42.4 20.7 95 1942-2044 22-127 (254)
193 2k7v_A Dihydrolipoyllysine-res 89.5 0.16 5.3E-06 49.8 2.6 36 686-721 38-73 (85)
194 2j5g_A ALR4455 protein; enzyme 89.3 2.6 8.7E-05 49.9 13.3 94 1942-2043 46-151 (263)
195 2k32_A A; NMR {Campylobacter j 89.2 0.31 1E-05 50.3 4.7 33 725-757 2-35 (116)
196 1szo_A 6-oxocamphor hydrolase; 88.9 2.8 9.5E-05 49.4 13.3 94 1942-2043 38-142 (257)
197 3p5m_A Enoyl-COA hydratase/iso 88.9 7.1 0.00024 45.8 16.7 94 1942-2043 28-127 (255)
198 3isa_A Putative enoyl-COA hydr 88.9 0.35 1.2E-05 56.9 5.5 86 1742-1829 98-195 (254)
199 1k8m_A E2 component of branche 88.7 0.25 8.4E-06 49.4 3.5 34 687-720 47-80 (93)
200 3g64_A Putative enoyl-COA hydr 88.7 13 0.00043 44.3 18.8 94 1942-2043 39-148 (279)
201 2a7k_A CARB; crotonase, antibi 88.6 4.2 0.00014 47.5 14.4 95 1942-2044 22-130 (250)
202 3i47_A Enoyl COA hydratase/iso 88.4 0.46 1.6E-05 56.4 6.1 85 1742-1828 99-197 (268)
203 2gpr_A Glucose-permease IIA co 88.4 0.32 1.1E-05 53.2 4.3 53 701-754 93-153 (154)
204 2jku_A Propionyl-COA carboxyla 88.4 0.07 2.4E-06 53.4 -0.7 33 687-719 62-94 (94)
205 2vx2_A Enoyl-COA hydratase dom 88.0 14 0.00049 44.1 18.7 96 1942-2045 55-163 (287)
206 3gow_A PAAG, probable enoyl-CO 88.0 16 0.00054 42.8 18.8 95 1942-2044 22-127 (254)
207 2j5i_A P-hydroxycinnamoyl COA 87.8 0.38 1.3E-05 57.3 4.9 86 1742-1829 106-206 (276)
208 3crk_C Dihydrolipoyllysine-res 87.8 0.28 9.6E-06 48.2 3.2 34 687-720 48-82 (87)
209 3myb_A Enoyl-COA hydratase; ss 87.8 0.52 1.8E-05 56.4 6.1 35 1742-1776 119-153 (286)
210 3i47_A Enoyl COA hydratase/iso 87.8 5.3 0.00018 47.2 14.7 95 1941-2043 25-134 (268)
211 2q35_A CURF; crotonase, lyase; 87.6 0.39 1.3E-05 56.2 4.7 88 1742-1831 90-192 (243)
212 3ot6_A Enoyl-COA hydratase/iso 87.5 2.9 0.0001 48.4 12.0 93 1942-2043 27-130 (232)
213 3l3s_A Enoyl-COA hydratase/iso 87.3 0.53 1.8E-05 55.6 5.8 86 1742-1829 104-203 (263)
214 2ppy_A Enoyl-COA hydratase; be 87.3 0.45 1.6E-05 56.2 5.2 85 1742-1828 101-201 (265)
215 3qxi_A Enoyl-COA hydratase ECH 87.2 0.64 2.2E-05 55.1 6.3 84 1742-1827 102-200 (265)
216 1pjh_A Enoyl-COA isomerase; EC 87.2 0.46 1.6E-05 56.7 5.2 75 1742-1817 112-202 (280)
217 3qmj_A Enoyl-COA hydratase, EC 87.1 4 0.00014 47.9 13.0 94 1942-2043 28-134 (256)
218 3he2_A Enoyl-COA hydratase ECH 87.1 11 0.00039 44.4 16.9 95 1941-2043 42-142 (264)
219 1uiy_A Enoyl-COA hydratase; ly 86.9 19 0.00066 42.0 18.7 94 1942-2043 21-129 (253)
220 3njd_A Enoyl-COA hydratase; ss 86.8 0.4 1.4E-05 58.7 4.5 85 1742-1828 157-253 (333)
221 3hin_A Putative 3-hydroxybutyr 86.7 0.32 1.1E-05 57.9 3.5 87 1742-1830 106-207 (275)
222 2np9_A DPGC; protein inhibitor 86.5 1 3.6E-05 56.9 8.0 89 1742-1832 284-386 (440)
223 2gtr_A CDY-like, chromodomain 86.5 4.7 0.00016 47.4 13.2 96 1942-2045 28-138 (261)
224 2ppy_A Enoyl-COA hydratase; be 86.4 18 0.00061 42.6 18.2 94 1942-2043 30-137 (265)
225 1hzd_A AUH, AU-binding protein 86.3 0.52 1.8E-05 56.0 5.0 89 1742-1831 105-211 (272)
226 4hdt_A 3-hydroxyisobutyryl-COA 86.3 48 0.0016 40.8 22.5 94 1942-2043 31-140 (353)
227 3hrx_A Probable enoyl-COA hydr 86.3 0.57 2E-05 55.0 5.2 84 1742-1827 91-189 (254)
228 3h81_A Enoyl-COA hydratase ECH 86.3 0.41 1.4E-05 57.1 4.1 86 1742-1829 115-215 (278)
229 2f6q_A Peroxisomal 3,2-trans-e 86.3 7.3 0.00025 46.4 14.8 95 1941-2044 47-157 (280)
230 2f6q_A Peroxisomal 3,2-trans-e 86.1 0.92 3.1E-05 54.1 7.0 86 1742-1829 121-221 (280)
231 2fbm_A Y chromosome chromodoma 86.0 6.9 0.00024 46.9 14.5 94 1942-2043 46-154 (291)
232 4fzw_A 2,3-dehydroadipyl-COA h 85.9 16 0.00055 42.9 17.3 94 1942-2043 27-130 (258)
233 4fzw_C 1,2-epoxyphenylacetyl-C 85.7 0.52 1.8E-05 56.1 4.5 88 1742-1831 111-213 (274)
234 1pmr_A Dihydrolipoyl succinylt 85.5 0.23 7.9E-06 48.0 1.1 36 684-719 42-77 (80)
235 4eml_A Naphthoate synthase; 1, 85.4 0.51 1.7E-05 56.2 4.2 86 1742-1829 109-209 (275)
236 3qk8_A Enoyl-COA hydratase ECH 85.4 5.5 0.00019 47.2 13.1 94 1942-2043 35-142 (272)
237 3g64_A Putative enoyl-COA hydr 85.3 0.35 1.2E-05 57.7 2.8 84 1742-1827 113-212 (279)
238 3lke_A Enoyl-COA hydratase; ny 85.2 5.2 0.00018 47.2 12.7 95 1941-2043 25-136 (263)
239 3t3w_A Enoyl-COA hydratase; ss 85.1 0.49 1.7E-05 56.4 4.0 35 1742-1776 117-151 (279)
240 3rsi_A Putative enoyl-COA hydr 85.0 14 0.00049 43.4 16.4 94 1942-2043 31-137 (265)
241 1nzy_A Dehalogenase, 4-chlorob 84.9 27 0.00091 41.2 18.7 94 1942-2043 25-135 (269)
242 3kqf_A Enoyl-COA hydratase/iso 84.9 0.5 1.7E-05 55.9 3.9 86 1742-1829 102-202 (265)
243 4f47_A Enoyl-COA hydratase ECH 84.9 0.48 1.6E-05 56.4 3.8 75 1742-1817 115-204 (278)
244 3swx_A Probable enoyl-COA hydr 84.9 0.85 2.9E-05 53.9 5.9 75 1742-1817 102-191 (265)
245 3p5m_A Enoyl-COA hydratase/iso 84.8 0.51 1.7E-05 55.5 3.9 84 1742-1827 92-190 (255)
246 2ejm_A Methylcrotonoyl-COA car 84.8 0.59 2E-05 47.1 3.8 50 722-772 12-62 (99)
247 2ej5_A Enoyl-COA hydratase sub 84.6 21 0.00072 41.7 17.6 95 1941-2043 24-129 (257)
248 3t89_A 1,4-dihydroxy-2-naphtho 84.6 0.55 1.9E-05 56.4 4.1 85 1742-1828 123-222 (289)
249 3h0u_A Putative enoyl-COA hydr 84.6 0.63 2.2E-05 55.8 4.6 86 1742-1829 103-204 (289)
250 1ax3_A Iiaglc, glucose permeas 84.5 0.44 1.5E-05 52.5 2.9 28 693-720 90-117 (162)
251 3h0u_A Putative enoyl-COA hydr 84.5 8 0.00027 46.3 14.0 94 1942-2043 29-139 (289)
252 3moy_A Probable enoyl-COA hydr 84.5 0.57 1.9E-05 55.4 4.1 84 1742-1827 100-198 (263)
253 3qre_A Enoyl-COA hydratase, EC 84.5 0.59 2E-05 56.3 4.3 84 1742-1827 130-228 (298)
254 3gkb_A Putative enoyl-COA hydr 84.4 0.66 2.2E-05 55.6 4.6 86 1742-1829 106-207 (287)
255 3m6n_A RPFF protein; enoyl-COA 84.3 32 0.0011 41.4 19.3 93 1943-2043 59-175 (305)
256 2cby_A ATP-dependent CLP prote 84.1 0.95 3.2E-05 51.7 5.6 85 1743-1827 86-203 (208)
257 3t8b_A 1,4-dihydroxy-2-naphtho 83.8 0.59 2E-05 57.3 3.9 86 1742-1829 167-268 (334)
258 1sg4_A 3,2-trans-enoyl-COA iso 83.7 5.2 0.00018 47.0 11.8 94 1942-2043 26-134 (260)
259 3hin_A Putative 3-hydroxybutyr 83.6 5.5 0.00019 47.3 12.0 95 1942-2045 38-143 (275)
260 3njd_A Enoyl-COA hydratase; ss 83.5 5.5 0.00019 48.6 12.3 97 1942-2046 57-195 (333)
261 2dnc_A Pyruvate dehydrogenase 83.4 0.45 1.5E-05 48.1 2.2 35 687-721 50-85 (98)
262 1f3z_A EIIA-GLC, glucose-speci 83.4 1.2 4.2E-05 48.9 5.8 53 702-755 99-160 (161)
263 3fdu_A Putative enoyl-COA hydr 83.4 0.9 3.1E-05 53.8 5.2 73 1742-1815 99-186 (266)
264 1gjx_A Pyruvate dehydrogenase; 83.3 0.28 9.7E-06 47.3 0.7 34 687-720 44-77 (81)
265 4di1_A Enoyl-COA hydratase ECH 83.0 0.67 2.3E-05 55.3 3.9 88 1742-1831 115-217 (277)
266 3fpp_A Macrolide-specific effl 82.8 0.8 2.7E-05 55.7 4.6 56 701-757 9-65 (341)
267 3h81_A Enoyl-COA hydratase ECH 82.8 16 0.00055 43.4 15.7 93 1942-2043 47-150 (278)
268 2pbp_A Enoyl-COA hydratase sub 82.8 17 0.00058 42.6 15.7 94 1942-2044 27-131 (258)
269 2xha_A NUSG, transcription ant 82.7 0.58 2E-05 52.6 2.9 44 703-752 85-157 (193)
270 3pe8_A Enoyl-COA hydratase; em 82.6 5.8 0.0002 46.6 11.6 95 1941-2043 30-127 (256)
271 1y8o_B Dihydrolipoyllysine-res 82.6 0.6 2.1E-05 49.5 2.9 34 687-720 70-104 (128)
272 3hp0_A Putative polyketide bio 82.5 7.8 0.00027 45.8 12.8 95 1942-2044 29-136 (267)
273 4f47_A Enoyl-COA hydratase ECH 82.5 12 0.00041 44.4 14.4 94 1942-2043 42-150 (278)
274 2dne_A Dihydrolipoyllysine-res 82.5 0.53 1.8E-05 48.4 2.4 34 687-720 50-84 (108)
275 3ic5_A Putative saccharopine d 82.2 2.1 7.3E-05 42.8 6.7 92 46-160 3-97 (118)
276 1szo_A 6-oxocamphor hydrolase; 82.1 1.2 4.1E-05 52.5 5.5 85 1742-1829 108-208 (257)
277 3moy_A Probable enoyl-COA hydr 82.1 22 0.00077 41.8 16.4 94 1942-2043 32-135 (263)
278 2duw_A Putative COA-binding pr 81.8 2.2 7.5E-05 45.9 7.0 107 49-167 14-128 (145)
279 3gkb_A Putative enoyl-COA hydr 81.7 6.8 0.00023 46.8 11.9 94 1942-2043 30-142 (287)
280 3tlf_A Enoyl-COA hydratase/iso 81.6 11 0.00039 44.5 13.7 94 1942-2043 33-145 (274)
281 3t89_A 1,4-dihydroxy-2-naphtho 81.5 7.8 0.00027 46.4 12.3 95 1941-2043 49-158 (289)
282 2d59_A Hypothetical protein PH 81.4 1.7 5.7E-05 46.7 5.9 116 34-167 14-135 (144)
283 2f1m_A Acriflavine resistance 81.4 0.91 3.1E-05 53.6 4.2 47 710-757 9-56 (277)
284 3qre_A Enoyl-COA hydratase, EC 81.3 9.6 0.00033 45.8 13.1 96 1942-2045 52-167 (298)
285 1y81_A Conserved hypothetical 81.1 1.8 6.2E-05 46.2 6.0 108 48-167 14-127 (138)
286 1dci_A Dienoyl-COA isomerase; 81.0 30 0.001 40.9 17.1 97 1941-2045 25-144 (275)
287 2a7k_A CARB; crotonase, antibi 79.9 0.97 3.3E-05 52.9 3.7 87 1742-1830 94-194 (250)
288 3lao_A Enoyl-COA hydratase/iso 79.7 6.4 0.00022 46.2 10.6 75 1742-1817 105-194 (258)
289 2gtr_A CDY-like, chromodomain 79.6 1.1 3.8E-05 52.8 4.1 84 1742-1827 101-199 (261)
290 1uiy_A Enoyl-COA hydratase; ly 79.4 1.1 3.7E-05 52.6 3.9 36 1742-1777 94-129 (253)
291 2ej5_A Enoyl-COA hydratase sub 79.1 0.98 3.4E-05 53.1 3.4 36 1742-1777 94-129 (257)
292 3t3w_A Enoyl-COA hydratase; ss 78.7 9.2 0.00031 45.5 11.7 95 1941-2043 41-152 (279)
293 3lnn_A Membrane fusion protein 78.6 0.95 3.3E-05 55.4 3.2 60 698-757 30-91 (359)
294 1wz8_A Enoyl-COA hydratase; ly 78.5 1.1 3.6E-05 53.1 3.4 36 1742-1777 104-139 (264)
295 1ef8_A Methylmalonyl COA decar 78.5 13 0.00043 43.7 12.7 94 1942-2043 26-131 (261)
296 3qmj_A Enoyl-COA hydratase, EC 78.4 1.2 4.2E-05 52.2 4.0 85 1742-1828 99-198 (256)
297 3fdu_A Putative enoyl-COA hydr 78.1 15 0.00052 43.3 13.2 96 1941-2044 26-135 (266)
298 2fbm_A Y chromosome chromodoma 78.1 1.3 4.5E-05 53.1 4.1 36 1742-1777 119-154 (291)
299 3ff4_A Uncharacterized protein 78.0 2.8 9.5E-05 44.0 6.1 108 48-168 4-117 (122)
300 2pbp_A Enoyl-COA hydratase sub 77.9 1.2 4E-05 52.5 3.6 36 1742-1777 95-130 (258)
301 1mj3_A Enoyl-COA hydratase, mi 77.9 1.1 3.9E-05 52.7 3.4 36 1742-1777 97-132 (260)
302 3r6h_A Enoyl-COA hydratase, EC 77.7 1.2 4.1E-05 51.7 3.5 86 1742-1829 95-195 (233)
303 3gow_A PAAG, probable enoyl-CO 77.6 1.3 4.3E-05 52.1 3.7 84 1742-1827 91-189 (254)
304 3rrv_A Enoyl-COA hydratase/iso 77.6 1.3 4.4E-05 52.8 3.9 36 1742-1777 122-157 (276)
305 3trr_A Probable enoyl-COA hydr 77.5 1.4 4.7E-05 51.9 4.0 85 1742-1828 93-192 (256)
306 1nzy_A Dehalogenase, 4-chlorob 77.5 1.2 4E-05 52.8 3.4 84 1742-1827 100-198 (269)
307 3rsi_A Putative enoyl-COA hydr 77.5 1.3 4.6E-05 52.2 3.9 84 1742-1827 102-200 (265)
308 1ef8_A Methylmalonyl COA decar 77.3 1.2 4.1E-05 52.5 3.4 36 1742-1777 96-131 (261)
309 1iuk_A Hypothetical protein TT 77.2 1.4 4.6E-05 47.3 3.5 108 48-167 13-128 (140)
310 1y7o_A ATP-dependent CLP prote 77.1 2.3 7.9E-05 48.9 5.6 38 1743-1780 104-143 (218)
311 2vx2_A Enoyl-COA hydratase dom 77.0 1.2 4.2E-05 53.3 3.4 36 1742-1777 126-161 (287)
312 3t8b_A 1,4-dihydroxy-2-naphtho 76.8 30 0.001 42.3 15.6 96 1942-2045 79-205 (334)
313 3bpt_A 3-hydroxyisobutyryl-COA 76.8 26 0.00089 43.2 15.3 96 1942-2044 28-138 (363)
314 3qxz_A Enoyl-COA hydratase/iso 76.6 1.4 4.9E-05 52.1 3.8 84 1742-1827 98-196 (265)
315 3pea_A Enoyl-COA hydratase/iso 76.5 1.3 4.5E-05 52.3 3.4 86 1742-1829 98-198 (261)
316 1sg4_A 3,2-trans-enoyl-COA iso 76.2 1.4 4.8E-05 51.9 3.6 84 1742-1827 97-197 (260)
317 2uzf_A Naphthoate synthase; ly 76.2 1.2 4.2E-05 52.8 3.1 36 1742-1777 107-142 (273)
318 4eml_A Naphthoate synthase; 1, 76.1 12 0.00042 44.3 11.7 94 1942-2043 32-144 (275)
319 2j5i_A P-hydroxycinnamoyl COA 76.1 49 0.0017 39.1 16.9 94 1942-2043 31-141 (276)
320 3tlf_A Enoyl-COA hydratase/iso 76.1 1.4 4.9E-05 52.3 3.6 86 1742-1829 110-211 (274)
321 3oc7_A Enoyl-COA hydratase; se 76.0 1.3 4.3E-05 52.5 3.2 36 1742-1777 108-143 (267)
322 3r9q_A Enoyl-COA hydratase/iso 75.7 1.4 4.8E-05 52.0 3.4 75 1742-1817 101-190 (262)
323 3m6n_A RPFF protein; enoyl-COA 75.7 1.5 5.2E-05 52.9 3.7 36 1742-1777 140-175 (305)
324 3he2_A Enoyl-COA hydratase ECH 75.5 1.4 4.9E-05 52.1 3.4 85 1742-1828 107-206 (264)
325 2j5g_A ALR4455 protein; enzyme 75.3 2.2 7.4E-05 50.5 4.9 83 1742-1827 117-215 (263)
326 3sll_A Probable enoyl-COA hydr 75.3 1.4 5E-05 52.7 3.4 84 1742-1827 123-222 (290)
327 3pe8_A Enoyl-COA hydratase; em 75.3 1.5 5E-05 51.7 3.4 85 1742-1828 92-191 (256)
328 3r9t_A ECHA1_1; ssgcid, seattl 74.8 1.5 5.3E-05 51.8 3.5 75 1742-1817 101-190 (267)
329 4fzw_A 2,3-dehydroadipyl-COA h 74.6 1.6 5.4E-05 51.5 3.5 87 1742-1830 95-196 (258)
330 3our_B EIIA, phosphotransferas 74.5 2.5 8.5E-05 47.2 4.7 19 738-756 121-139 (183)
331 3i6i_A Putative leucoanthocyan 74.3 12 0.00041 45.1 11.2 121 49-187 11-154 (346)
332 3qk8_A Enoyl-COA hydratase ECH 74.1 1.5 5.2E-05 52.0 3.2 36 1742-1777 107-142 (272)
333 3ot6_A Enoyl-COA hydratase/iso 74.0 1.5 5.1E-05 50.8 3.0 87 1742-1830 94-196 (232)
334 2xha_A NUSG, transcription ant 73.8 2 6.9E-05 48.3 3.8 30 701-736 23-52 (193)
335 2q35_A CURF; crotonase, lyase; 73.8 8.7 0.0003 44.7 9.4 92 1942-2043 25-125 (243)
336 1wdk_A Fatty oxidation complex 73.6 34 0.0012 46.0 16.2 94 1942-2043 30-138 (715)
337 1wz8_A Enoyl-COA hydratase; ly 73.1 27 0.00091 41.1 13.5 94 1942-2043 32-139 (264)
338 3lu0_D DNA-directed RNA polyme 72.5 2.4 8.3E-05 59.1 4.9 43 701-745 1003-1046(1407)
339 3d4r_A Domain of unknown funct 71.9 3.4 0.00011 45.2 4.8 49 690-738 103-152 (169)
340 1vf7_A Multidrug resistance pr 71.8 1.8 6.3E-05 53.4 3.3 55 701-756 21-76 (369)
341 1pjh_A Enoyl-COA isomerase; EC 71.3 27 0.00092 41.4 13.1 95 1941-2043 30-148 (280)
342 3nkl_A UDP-D-quinovosamine 4-d 71.1 5.6 0.00019 41.7 6.4 95 48-165 4-102 (141)
343 2uzf_A Naphthoate synthase; ly 70.5 18 0.0006 42.9 11.2 94 1942-2043 35-142 (273)
344 3ju1_A Enoyl-COA hydratase/iso 70.3 17 0.00057 45.7 11.4 94 1942-2043 64-177 (407)
345 3rrv_A Enoyl-COA hydratase/iso 70.2 14 0.00049 43.8 10.3 95 1941-2043 49-157 (276)
346 1mj3_A Enoyl-COA hydratase, mi 69.7 34 0.0012 40.1 13.3 96 1942-2045 29-134 (260)
347 3bpt_A 3-hydroxyisobutyryl-COA 69.6 2.3 7.8E-05 52.7 3.4 38 1742-1779 102-139 (363)
348 4dk0_A Putative MACA; alpha-ha 68.0 1.1 3.7E-05 55.0 0.1 55 702-757 11-66 (369)
349 2f6i_A ATP-dependent CLP prote 67.8 5.6 0.00019 45.7 5.9 38 1743-1780 97-136 (215)
350 2auk_A DNA-directed RNA polyme 67.3 3.6 0.00012 46.4 4.1 44 701-746 64-108 (190)
351 3zwc_A Peroxisomal bifunctiona 66.4 3.6 0.00012 55.5 4.5 85 1743-1828 107-208 (742)
352 3swx_A Probable enoyl-COA hydr 66.2 15 0.00053 43.2 9.4 95 1942-2044 31-138 (265)
353 3our_B EIIA, phosphotransferas 66.1 7.2 0.00025 43.6 6.0 29 692-720 111-139 (183)
354 3ne5_B Cation efflux system pr 65.9 4.4 0.00015 50.9 5.0 57 701-757 97-156 (413)
355 4hdt_A 3-hydroxyisobutyryl-COA 65.8 2.9 0.0001 51.5 3.2 37 1742-1778 105-141 (353)
356 3lao_A Enoyl-COA hydratase/iso 65.7 9.9 0.00034 44.6 7.6 94 1942-2043 34-140 (258)
357 3rst_A Signal peptide peptidas 64.7 3.3 0.00011 48.3 3.2 38 1743-1780 80-117 (240)
358 2r6j_A Eugenol synthase 1; phe 64.6 26 0.00089 41.4 11.2 122 46-187 9-150 (318)
359 3ju1_A Enoyl-COA hydratase/iso 63.8 2.9 9.8E-05 52.6 2.7 38 1742-1779 142-179 (407)
360 2w3p_A Benzoyl-COA-dihydrodiol 63.5 21 0.0007 46.2 10.3 94 1942-2043 53-166 (556)
361 3qxz_A Enoyl-COA hydratase/iso 62.9 9.1 0.00031 45.1 6.6 93 1942-2043 29-133 (265)
362 1yg6_A ATP-dependent CLP prote 62.1 8.1 0.00028 43.5 5.7 38 1743-1780 85-124 (193)
363 3dva_I Dihydrolipoyllysine-res 60.7 1.8 6.1E-05 54.8 0.0 43 679-721 37-79 (428)
364 3dhn_A NAD-dependent epimerase 60.6 27 0.00093 39.0 9.8 73 47-140 3-76 (227)
365 3oc7_A Enoyl-COA hydratase; se 60.0 20 0.0007 42.1 8.9 94 1942-2043 33-143 (267)
366 2bco_A Succinylglutamate desuc 60.0 5.5 0.00019 49.0 4.1 63 690-758 266-330 (350)
367 3qwd_A ATP-dependent CLP prote 58.7 11 0.00038 42.9 6.1 38 1743-1780 86-125 (203)
368 2w3p_A Benzoyl-COA-dihydrodiol 58.4 5.1 0.00017 51.7 3.5 85 1742-1828 129-233 (556)
369 2xhc_A Transcription antitermi 58.3 6.3 0.00021 48.5 4.2 46 701-752 63-138 (352)
370 3qxi_A Enoyl-COA hydratase ECH 56.6 1.2E+02 0.004 35.6 14.6 95 1942-2045 37-139 (265)
371 3keo_A Redox-sensing transcrip 54.3 7 0.00024 44.8 3.5 108 3-138 46-155 (212)
372 1hdo_A Biliverdin IX beta redu 54.0 41 0.0014 36.6 9.7 27 49-75 4-31 (206)
373 3r6d_A NAD-dependent epimerase 53.8 24 0.00081 39.5 7.8 30 46-75 3-34 (221)
374 3r9q_A Enoyl-COA hydratase/iso 53.2 56 0.0019 38.4 11.1 94 1942-2043 33-136 (262)
375 2hmt_A YUAA protein; RCK, KTN, 53.2 9.3 0.00032 39.4 4.0 28 48-75 6-33 (144)
376 3llv_A Exopolyphosphatase-rela 53.1 7.1 0.00024 40.8 3.1 28 48-75 6-33 (141)
377 3trr_A Probable enoyl-COA hydr 52.5 87 0.003 36.6 12.5 93 1942-2043 29-128 (256)
378 2yy7_A L-threonine dehydrogena 52.2 26 0.00089 41.1 8.2 71 48-138 2-75 (312)
379 3p2l_A ATP-dependent CLP prote 51.9 15 0.00051 41.8 5.6 38 1743-1780 89-128 (201)
380 1hzd_A AUH, AU-binding protein 51.6 27 0.00093 41.2 8.1 96 1942-2045 34-142 (272)
381 3m2p_A UDP-N-acetylglucosamine 51.3 42 0.0014 39.5 9.8 29 47-75 1-30 (311)
382 1lss_A TRK system potassium up 50.6 22 0.00076 36.4 6.4 27 49-75 5-31 (140)
383 2xhc_A Transcription antitermi 50.5 7 0.00024 48.1 2.8 44 703-752 125-197 (352)
384 1zko_A Glycine cleavage system 50.2 6.5 0.00022 42.1 2.2 46 675-720 62-114 (136)
385 1qyc_A Phenylcoumaran benzylic 50.0 32 0.0011 40.3 8.4 121 48-187 4-148 (308)
386 1zy8_K Pyruvate dehydrogenase 49.6 3.5 0.00012 47.9 0.0 37 684-720 43-80 (229)
387 1qyd_A Pinoresinol-lariciresin 49.3 49 0.0017 38.8 9.9 28 48-75 4-32 (313)
388 3fwz_A Inner membrane protein 48.7 6.5 0.00022 41.4 1.9 30 46-75 5-34 (140)
389 1tg6_A Putative ATP-dependent 46.8 21 0.00072 42.5 6.0 38 1743-1780 141-180 (277)
390 3abi_A Putative uncharacterize 46.7 15 0.0005 45.2 4.9 120 44-192 14-133 (365)
391 2io8_A Bifunctional glutathion 46.3 21 0.0007 47.2 6.4 101 147-280 474-574 (619)
392 3sc6_A DTDP-4-dehydrorhamnose 46.2 24 0.00083 40.9 6.5 58 48-138 4-63 (287)
393 3n6x_A Putative glutathionylsp 46.2 17 0.00059 46.4 5.5 60 217-279 350-411 (474)
394 3qvo_A NMRA family protein; st 45.9 25 0.00087 39.9 6.5 30 46-75 21-52 (236)
395 1wdk_A Fatty oxidation complex 44.8 12 0.0004 50.5 3.9 87 1742-1830 103-204 (715)
396 3na6_A Succinylglutamate desuc 44.7 14 0.00049 45.0 4.3 34 724-757 257-290 (331)
397 2c20_A UDP-glucose 4-epimerase 44.2 41 0.0014 39.8 8.2 73 48-138 1-74 (330)
398 2ywr_A Phosphoribosylglycinami 43.9 62 0.0021 37.0 9.2 80 48-141 1-91 (216)
399 2wtb_A MFP2, fatty acid multif 43.3 60 0.0021 43.7 10.4 94 1942-2043 29-137 (725)
400 4hv4_A UDP-N-acetylmuramate--L 43.1 28 0.00094 44.7 6.8 29 47-75 21-50 (494)
401 2g1u_A Hypothetical protein TM 43.0 51 0.0017 35.0 7.9 28 48-75 19-46 (155)
402 3enk_A UDP-glucose 4-epimerase 42.5 72 0.0025 37.9 10.0 76 47-138 4-85 (341)
403 3dfz_A SIRC, precorrin-2 dehyd 42.2 14 0.00049 42.6 3.6 27 49-75 32-58 (223)
404 4egb_A DTDP-glucose 4,6-dehydr 41.4 94 0.0032 37.0 10.8 80 48-140 24-107 (346)
405 3c1o_A Eugenol synthase; pheny 41.4 1.1E+02 0.0037 36.1 11.2 121 47-187 3-148 (321)
406 3fmc_A Putative succinylglutam 41.2 16 0.00054 45.3 4.0 31 726-756 292-322 (368)
407 2q1w_A Putative nucleotide sug 40.7 48 0.0016 39.5 8.1 77 48-140 21-98 (333)
408 2wtb_A MFP2, fatty acid multif 40.6 12 0.00042 50.3 3.1 86 1742-1829 102-202 (725)
409 4id9_A Short-chain dehydrogena 40.0 82 0.0028 37.5 10.0 69 46-140 17-86 (347)
410 4ina_A Saccharopine dehydrogen 40.0 35 0.0012 42.6 7.0 123 48-192 1-141 (405)
411 3f8d_A Thioredoxin reductase ( 39.9 37 0.0013 39.6 6.8 29 47-75 14-42 (323)
412 2gas_A Isoflavone reductase; N 39.6 84 0.0029 36.6 9.8 119 48-187 2-147 (307)
413 1t2a_A GDP-mannose 4,6 dehydra 38.9 73 0.0025 38.5 9.4 78 46-138 22-109 (375)
414 3slg_A PBGP3 protein; structur 36.2 71 0.0024 38.5 8.7 28 48-75 24-53 (372)
415 2jl1_A Triphenylmethane reduct 36.2 42 0.0014 38.9 6.4 27 49-75 1-30 (287)
416 2pzm_A Putative nucleotide sug 35.6 60 0.002 38.6 7.8 76 49-140 21-97 (330)
417 1ek6_A UDP-galactose 4-epimera 35.2 77 0.0026 37.7 8.7 29 47-75 1-30 (348)
418 1n7h_A GDP-D-mannose-4,6-dehyd 35.0 1E+02 0.0035 37.3 9.8 30 46-75 26-56 (381)
419 2c5a_A GDP-mannose-3', 5'-epim 34.8 85 0.0029 38.2 9.1 29 47-75 28-57 (379)
420 3r9t_A ECHA1_1; ssgcid, seattl 34.8 67 0.0023 37.8 7.8 94 1941-2043 30-136 (267)
421 3eag_A UDP-N-acetylmuramate:L- 33.9 39 0.0013 40.8 5.8 88 48-161 4-95 (326)
422 3ruf_A WBGU; rossmann fold, UD 33.8 59 0.002 38.8 7.3 42 32-75 11-53 (351)
423 1orr_A CDP-tyvelose-2-epimeras 33.2 98 0.0033 36.6 9.1 73 48-138 1-80 (347)
424 1rpn_A GDP-mannose 4,6-dehydra 32.8 1.1E+02 0.0036 36.2 9.3 77 46-138 12-93 (335)
425 3ius_A Uncharacterized conserv 32.7 48 0.0017 38.3 6.1 30 46-75 3-32 (286)
426 2pk3_A GDP-6-deoxy-D-LYXO-4-he 32.3 96 0.0033 36.4 8.8 74 45-140 9-83 (321)
427 3s2u_A UDP-N-acetylglucosamine 31.8 63 0.0022 39.4 7.2 29 47-75 1-34 (365)
428 2ydy_A Methionine adenosyltran 31.7 42 0.0014 39.5 5.5 29 47-75 1-30 (315)
429 2dt5_A AT-rich DNA-binding pro 30.2 25 0.00086 40.2 3.0 33 34-66 66-98 (211)
430 3ay3_A NAD-dependent epimerase 29.8 46 0.0016 38.3 5.3 72 47-141 1-73 (267)
431 3db2_A Putative NADPH-dependen 29.7 57 0.002 39.6 6.3 27 44-70 1-27 (354)
432 1id1_A Putative potassium chan 29.5 72 0.0025 33.7 6.3 27 49-75 4-30 (153)
433 3uog_A Alcohol dehydrogenase; 29.4 56 0.0019 39.9 6.1 83 41-140 183-266 (363)
434 2x4g_A Nucleoside-diphosphate- 29.2 1.1E+02 0.0037 36.3 8.5 26 50-75 15-41 (342)
435 1rkx_A CDP-glucose-4,6-dehydra 28.7 94 0.0032 37.2 8.0 72 49-138 10-87 (357)
436 2axq_A Saccharopine dehydrogen 28.6 54 0.0019 41.8 6.0 118 47-192 22-144 (467)
437 3itj_A Thioredoxin reductase 1 28.5 65 0.0022 37.8 6.4 30 46-75 20-49 (338)
438 3it5_A Protease LASA; metallop 28.2 61 0.0021 36.2 5.6 56 687-756 48-104 (182)
439 3auf_A Glycinamide ribonucleot 28.0 1.4E+02 0.0049 34.4 8.9 79 49-141 23-112 (229)
440 3o9z_A Lipopolysaccaride biosy 27.9 1.3E+02 0.0045 35.9 8.9 92 48-160 3-100 (312)
441 1pjq_A CYSG, siroheme synthase 27.8 52 0.0018 41.8 5.6 27 49-75 13-39 (457)
442 2z1m_A GDP-D-mannose dehydrata 26.8 1.6E+02 0.0055 34.7 9.4 76 49-140 4-84 (345)
443 2nu8_A Succinyl-COA ligase [AD 26.7 1.8E+02 0.006 34.6 9.7 27 48-74 7-34 (288)
444 1p9l_A Dihydrodipicolinate red 26.7 1.6E+02 0.0055 34.3 9.1 96 50-163 2-104 (245)
445 2wm3_A NMRA-like family domain 26.6 74 0.0025 37.1 6.3 28 48-75 5-34 (299)
446 1db3_A GDP-mannose 4,6-dehydra 26.5 1.3E+02 0.0043 36.2 8.6 77 48-140 1-87 (372)
447 4gx0_A TRKA domain protein; me 26.4 77 0.0026 41.1 7.0 43 33-75 333-375 (565)
448 3r9u_A Thioredoxin reductase; 25.6 66 0.0023 37.4 5.7 29 47-75 3-31 (315)
449 1sb8_A WBPP; epimerase, 4-epim 25.2 1.2E+02 0.004 36.4 7.9 28 48-75 27-55 (352)
450 3e8x_A Putative NAD-dependent 24.6 2.6E+02 0.0088 31.2 10.2 28 49-76 22-50 (236)
451 3cdx_A Succinylglutamatedesucc 24.6 47 0.0016 40.7 4.3 33 724-756 267-299 (354)
452 1mio_B Nitrogenase molybdenum 24.4 1.8E+02 0.006 36.9 9.6 37 35-75 303-339 (458)
453 2bw0_A 10-FTHFDH, 10-formyltet 24.3 1.3E+02 0.0045 36.5 8.0 82 49-141 23-110 (329)
454 3ef6_A Toluene 1,2-dioxygenase 24.3 50 0.0017 40.9 4.5 27 47-73 1-27 (410)
455 3l4b_C TRKA K+ channel protien 23.8 61 0.0021 36.4 4.7 26 50-75 2-27 (218)
456 1fy2_A Aspartyl dipeptidase; s 23.6 2E+02 0.0067 33.0 9.0 98 33-170 22-127 (229)
457 4ea9_A Perosamine N-acetyltran 23.6 76 0.0026 35.8 5.5 30 46-75 10-39 (220)
458 4gqa_A NAD binding oxidoreduct 23.4 63 0.0021 40.1 5.1 97 50-160 28-124 (412)
459 3pdi_B Nitrogenase MOFE cofact 23.2 2.7E+02 0.0091 35.4 10.9 78 35-138 304-382 (458)
460 1vl0_A DTDP-4-dehydrorhamnose 23.0 1.1E+02 0.0036 35.6 6.7 61 47-140 11-72 (292)
461 3kkj_A Amine oxidase, flavin-c 23.0 45 0.0015 36.5 3.3 28 48-75 2-29 (336)
462 3rft_A Uronate dehydrogenase; 22.7 1.4E+02 0.0048 34.4 7.7 71 48-141 3-74 (267)
463 4f3y_A DHPR, dihydrodipicolina 22.4 1.2E+02 0.004 36.0 6.9 25 45-70 5-30 (272)
464 4eye_A Probable oxidoreductase 22.4 1.3E+02 0.0045 36.2 7.6 82 41-141 153-237 (342)
465 3l9w_A Glutathione-regulated p 22.0 25 0.00086 44.1 1.1 27 49-75 5-31 (413)
466 2dq4_A L-threonine 3-dehydroge 21.9 70 0.0024 38.6 5.0 80 42-140 160-240 (343)
467 3lk7_A UDP-N-acetylmuramoylala 21.9 1.2E+02 0.004 38.3 7.2 87 48-161 9-101 (451)
468 3jyn_A Quinone oxidoreductase; 21.9 83 0.0028 37.6 5.6 83 41-141 134-219 (325)
469 3e48_A Putative nucleoside-dip 21.8 1.3E+02 0.0046 34.7 7.3 26 50-75 2-29 (289)
470 3fbs_A Oxidoreductase; structu 21.8 55 0.0019 37.7 3.9 29 47-75 1-29 (297)
471 2p5y_A UDP-glucose 4-epimerase 21.5 1.3E+02 0.0044 35.2 7.1 71 50-138 2-73 (311)
472 3upl_A Oxidoreductase; rossman 21.2 1.6E+02 0.0056 37.3 8.2 152 49-235 24-188 (446)
473 2q1s_A Putative nucleotide sug 21.2 96 0.0033 37.7 6.1 27 49-75 33-61 (377)
474 4ew6_A D-galactose-1-dehydroge 21.1 2.6E+02 0.0089 33.6 9.8 61 49-138 26-88 (330)
475 3ip1_A Alcohol dehydrogenase, 21.1 1E+02 0.0036 38.1 6.4 83 43-142 209-293 (404)
476 1c1d_A L-phenylalanine dehydro 21.1 3.9E+02 0.013 32.9 11.3 42 34-75 160-202 (355)
477 3gpi_A NAD-dependent epimerase 21.0 51 0.0018 38.2 3.4 28 48-75 3-30 (286)
478 4ds3_A Phosphoribosylglycinami 20.9 2.4E+02 0.0083 32.1 8.8 77 51-141 12-97 (209)
479 3qwb_A Probable quinone oxidor 20.7 91 0.0031 37.3 5.7 84 40-141 141-227 (334)
480 3c85_A Putative glutathione-re 20.7 33 0.0011 37.4 1.6 27 49-75 40-67 (183)
481 3gms_A Putative NADPH:quinone 20.5 1.6E+02 0.0056 35.3 7.8 82 41-140 138-222 (340)
482 1e6u_A GDP-fucose synthetase; 20.4 1.4E+02 0.0049 34.9 7.2 60 49-140 4-64 (321)
483 4g65_A TRK system potassium up 20.4 53 0.0018 41.8 3.6 42 32-74 218-260 (461)
484 3av3_A Phosphoribosylglycinami 20.3 2.5E+02 0.0086 31.9 8.8 79 49-141 4-93 (212)
No 1
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A
Probab=100.00 E-value=5.9e-168 Score=1600.99 Aligned_cols=749 Identities=48% Similarity=0.807 Sum_probs=660.0
Q ss_pred cccCCCcccccccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCc
Q 000092 1495 GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTP 1574 (2267)
Q Consensus 1495 g~~~~~~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~ 1574 (2267)
|||||+|+++|||+||+||+||++||++|||||||||+||++|+.++|++..+ ....|+++++++||+||+ +| +
T Consensus 1 g~~~~~~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~l~~~~~~~~w~~~~~-~~~~~~~~~~~~el~l~~-~~----~ 74 (758)
T 3k8x_A 1 GSMHLRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSA-DVKLTDDFFISNELIEDE-NG----E 74 (758)
T ss_dssp ----CCCCCCSSCCHHHHSHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHCT-TCCCCGGGEEEEEEEECT-TS----C
T ss_pred CCcCCcccCCCCCCcchhhHHHHHHHHcCCeeecchHHHHHHHHHHHHHhccc-cccCCCccceEEEEEEcC-CC----C
Confidence 79999999999999999999999999999999999999999999999987652 345678899999999998 77 8
Q ss_pred ccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCC
Q 000092 1575 LVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARI 1654 (2267)
Q Consensus 1575 l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi 1654 (2267)
|.+++|+||.|++|||+|.++++||||++|++|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||
T Consensus 75 L~~~~r~~G~nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t~~gGS~G~~~~eKi~Ra~e~A~~~~lPvI~l~dSGGARm 154 (758)
T 3k8x_A 75 LTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARI 154 (758)
T ss_dssp EEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCC
T ss_pred eehhhcCCCCCCceEEEEEEEECCccccCCeEEEEEEECCccccccCcHHHHHHHHHHHHHHHHcCCCEEEEecCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhccccccCCCCCCCCccccccChhhHHhhc-----cceeeeccccccCceeeEEEeecccccCccccccccc
Q 000092 1655 GVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG-----SSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGS 1729 (2267)
Q Consensus 1655 ~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~-----~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~s 1729 (2267)
|++++++++|+|+|+|+.+|.+||+|||+++++|++++ ++++.+.++ ++||.||||++|+|+++|+|++|+++|
T Consensus 155 qe~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~~~vi~~~~~-~~ge~r~~I~~I~G~~~~~gv~~l~~s 233 (758)
T 3k8x_A 155 GMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTV-INGEERFVIKTIIGSEDGLGVECLRGS 233 (758)
T ss_dssp CCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEE-ETTEEEEEEEEECCSSSCSSHHHHHHH
T ss_pred cccchhccccccccccccchhcccceeccCHHHHHHhhhccccccceeeeec-cCCceeeeEeeeeccccchhhhhcccc
Confidence 99999999999999999999999999999999999994 568888777 899999999999999999999999999
Q ss_pred ccccccccccccCceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCc
Q 000092 1730 GAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1730 G~iag~~s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv 1809 (2267)
|+|||+||+||++||||++|||||+|||||+++|||++||+++++||||||++|++++|+++|+|+++|||+++|.+||+
T Consensus 234 G~iag~~s~a~~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~ifltGP~vIk~~tGeeV~~s~eeLGGA~vh~~sGv 313 (758)
T 3k8x_A 234 GLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYNNGV 313 (758)
T ss_dssp HHHHHHHHHHHTTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESSCHHHHHHHHTSCCCSCTHHHHSHHHHTTTTS
T ss_pred chhhhhhhhhhcCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEeCHHHHHHHhCCccccCchhcchhhHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccCCC--CCCChHHHhcccccCCCCcccccccCCCce
Q 000092 1810 VHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE--NSCDPRAAICGFLDNNGKWIGGIFDKDSFV 1887 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~--~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~ 1887 (2267)
+|++++||.++++.+|+||||+|.++.+++|..++.||++|.++++|. ++||+|++|+++.|+++ |++||||+++|+
T Consensus 314 ad~va~dd~eal~~ir~lLsyLP~~~~~~~p~~~~~dp~dr~~~~vP~~~~pYD~R~vIa~~~d~~~-~~~givD~~sF~ 392 (758)
T 3k8x_A 314 SHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFF 392 (758)
T ss_dssp SSEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCSSCSCSCCCCCCCSSSCCCHHHHHHCEEETTE-EECCSSCTTCCE
T ss_pred eeEEecCHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCchhhhhccCCCCCCCCCHHHHHhccccccc-ccceeecCCceE
Confidence 999999999999999999999999999999999999999999999998 99999999999988887 999999999999
Q ss_pred eccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcc-cCCcE
Q 000092 1888 ETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR-EELPL 1966 (2267)
Q Consensus 1888 E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~-~~lPL 1966 (2267)
|++++||+++|||+|||+|+||||||++++.+++.+||||+||++.|+..+++||+|+|++++|+||||++|++ |++||
T Consensus 393 E~~~~~a~~iVtG~ARl~G~pVGVIAn~~~~~~~~~padP~~p~~~e~~~~~~gG~l~pe~a~KaArfI~lcd~~f~iPL 472 (758)
T 3k8x_A 393 ETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPM 472 (758)
T ss_dssp EESTTSCTTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTSTTCCCEEEEECTTEECHHHHHHHHHHHHHHHHTSCCCE
T ss_pred EEcCCccccEEEEEEEECCEEEEEEEEccccccccCcccccCcchhhhHHhhcCCCCCHHHHHHHHHHHHHhhhccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCc
Q 000092 1967 FILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 1967 v~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
|+|+||+||++|.++|+.|++++||++++++++++||+|++|+|+|+++||||+++++++|+|+|++||||+|++|||+|
T Consensus 473 v~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~~am~~~~~ad~~~v~Awp~A~isVM~p 552 (758)
T 3k8x_A 473 MILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEP 552 (758)
T ss_dssp EECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHHHTTCGGGSTTTEEEEEETTCEEESSCH
T ss_pred EEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHHHHhCcccCCCHHHHhcCCCCEEEccCH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred cchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHH
Q 000092 2047 EGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAA 2126 (2267)
Q Consensus 2047 egav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~ 2126 (2267)
||+|+|+||+++++++|+|+||+|++|++++++. +.+.+++++++++|++||++|+|+|+|||++||||||||+||++
T Consensus 553 Egaa~Il~r~~~~~~~m~r~d~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~re~~l~p~y~qva~~fadlHd~~~rm~~ 630 (758)
T 3k8x_A 553 QGMVGIKFRREKLLDTMNRLDDKYRELRSQLSNK--SLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVA 630 (758)
T ss_dssp HHHHHHHSCHHHHHHHHHHHCSCCCCC------------------------------HHHHHHHHHHHHHTTSBHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHhcCHHHHHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcHHHHHh
Confidence 9999999999999999999999999999999887 56678889999999999999999999999999999999999999
Q ss_pred cCCcccccCccchHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhcccccccCCCCccCchhhHHhhc-
Q 000092 2127 KGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD- 2205 (2267)
Q Consensus 2127 ~G~Id~ii~~~~~R~~~~~~L~r~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~w~~- 2205 (2267)
||+|++||+|+++|+||||||||||.|+.++++|.++++ .+++.+++++|++||.+. ..|+||++|++|++
T Consensus 631 ~g~i~~~~~w~~~r~~f~~rlrr~l~e~~~~~~~~~~~~-~~~~~~~~~~l~~w~~~~-------~~w~~d~~~~~w~~~ 702 (758)
T 3k8x_A 631 KGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQVG-EASRLEKIARIRSWYPAS-------VDHEDDRQVATWIEE 702 (758)
T ss_dssp HTCSSEEECGGGHHHHHHHHHHHHHHHHHHHHHHHTSSS-CCCHHHHHHHHHTTSCTT-------SCTTCHHHHHHHHHH
T ss_pred hCccccccchHHhHHHHHHHHHHHHhHHHHHHHHHhhCc-ccCHHHHHHHHHHHhhcc-------CCccccHHHHHHHHh
Confidence 999999999999999999999999999999999999998 579999999999999643 23999999999999
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 000092 2206 DSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEIS 2263 (2267)
Q Consensus 2206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 2263 (2267)
+.+.++++|++||.+++.++|.++++++ ++.+++ |+.+++++||+++|+++++.|+
T Consensus 703 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 758 (758)
T 3k8x_A 703 NYKTLDDKLKGLKLESFAQDLAKKIRSD-HDNAID-GLSEVIKMLSTDDKEKLLKTLK 758 (758)
T ss_dssp HHHHHHHHHHHHHTTCCC----------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHH-HHHHHHHhCCHHHHHHHHHhhC
Confidence 8899999999999999999999998888 888898 9999999999999999999874
No 2
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=100.00 E-value=5e-154 Score=1487.63 Aligned_cols=756 Identities=47% Similarity=0.818 Sum_probs=622.9
Q ss_pred cccccCCCcccccccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCc
Q 000092 1493 VRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWG 1572 (2267)
Q Consensus 1493 ~~g~~~~~~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~ 1572 (2267)
..|+|||+|+++|||+++.||+||++|+..||+||||||+||++++.++|.+.. ..|...+++.|++||+ +|
T Consensus 18 ~~g~~~~~~~~~p~~~~~~l~~kr~~a~~~g~~y~yd~~~~~~~a~~~~w~~~~----~~~~~~l~~~elllD~-~g--- 89 (793)
T 2x24_A 18 GSGPQHGMLINTPYVTKDLLQAKRFQAQSLGTTYVYDFPEMFRQALFKMWPSPD----KYPKDILTYTELVLDP-QG--- 89 (793)
T ss_dssp -------------------CTTHHHHHHHTTSCCGGGHHHHHHHHHHHHSCSSS----CCCTTSEEEEEEEECT-TS---
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHhhhhcc----cCCCCchhHHHHhcCC-CC---
Confidence 389999999999999999999999999999999999999999999999998621 3456788999999998 67
Q ss_pred CcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Q 000092 1573 TPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGA 1652 (2267)
Q Consensus 1573 ~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGA 1652 (2267)
.|.|+.+.+|.|++|||+|+++++||+||+||+|+|++||+||++||||+.+++||.|++++|+++|+|+|||++||||
T Consensus 90 -sf~E~~~~~~~~~~GmV~g~~~~~t~~~~~Gr~vvVianD~t~~gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGA 168 (793)
T 2x24_A 90 -QLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGA 168 (793)
T ss_dssp -CEECCCCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECSSGGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCB
T ss_pred -CEEEeCCccCCCCCCeeeeeecccCccccCCeEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhc--cceeeeccccccCceeeEEEeecccccCcccccccccc
Q 000092 1653 RIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG--SSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSG 1730 (2267)
Q Consensus 1653 Ri~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~--~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG 1730 (2267)
||+++|++++||||+|.|+.+|..||+|+|++++++++++ +++++++++ ++||++|+|++|||+++|+|++|+++||
T Consensus 169 Rig~~ee~~sl~qma~~d~~~p~~G~~~~yl~~~~~~~~sa~~~v~~~~~~-~~ge~~~~i~~i~g~~~~i~v~~l~~SG 247 (793)
T 2x24_A 169 RIGLAEEIKHMFQVAWVDPEDPHKGIKYLYLTPQDYTRISSLNSVHCKHVE-EDGESRYVITDIIGKEEGLGVENLRGSG 247 (793)
T ss_dssp CCCCCHHHHTTCEEEESSSSCSTTCEEEEEECHHHHHHTTTSCSEEEEEEE-ETTEEEEEEEEECCSSSSSSTHHHHHHH
T ss_pred CccchhhhhhhhcccccCccCcccchheeccchhHHHhhhccccccccccc-cccccceeeeccccccchHHHHHHHhcc
Confidence 9999999999999999999999999999999999999996 567777777 8999999999999999999999999999
Q ss_pred cccccccccccCceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCce
Q 000092 1731 AIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVV 1810 (2267)
Q Consensus 1731 ~iag~~s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~ 1810 (2267)
+|||++|+||.+||||++|||||+|||||+++|||++||+++++|+||||++||+++|+++|+|+++|||+++|++||++
T Consensus 248 ~iag~~s~a~~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ltGp~vi~~~~Ge~vy~s~e~LGGa~v~~~~Gv~ 327 (793)
T 2x24_A 248 MIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTGATALNKVLGRDVYTSNNQLGGVQIMHHNGVS 327 (793)
T ss_dssp HHHHHHHHHHHHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESSCHHHHHHHHSSCCCSCHHHHHSHHHHTTTTSC
T ss_pred chhhccccccCCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEecCHHHHHHhcCCcccCChhhhccHHHHHhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccCCC-CCCChHHHhcccccCC--CCcccccccCCCce
Q 000092 1811 HLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE-NSCDPRAAICGFLDNN--GKWIGGIFDKDSFV 1887 (2267)
Q Consensus 1811 d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~-~~yD~R~~i~~~~~~~--~~~~~gl~D~gSF~ 1887 (2267)
|++++||.++++.+++||||+|+++.+++|..++.||++|.++++|. ++||+|++|++..+++ +.|+++|||+++|+
T Consensus 328 d~vv~dd~ea~~~ir~~LsylP~~~~~~~p~~~~~d~~~rl~~ivP~~~pyD~r~vI~g~~~~~~~~~~~~~l~D~g~F~ 407 (793)
T 2x24_A 328 HVTVPDDFEGVCTILEWLSYMPKDNRSPVPVVTPKDPIDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFK 407 (793)
T ss_dssp SEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCSSCSSCCCCCCCCSSCCCHHHHHHCEECSSSSSCEECCSSCTTCCE
T ss_pred EEEeCCHHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHhhCCCCCCCCHHHHHhcccccccccchhhccccCcceE
Confidence 99999999999999999999999988888888899999999999998 9999999999776654 68999999999999
Q ss_pred eccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEE
Q 000092 1888 ETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLF 1967 (2267)
Q Consensus 1888 E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv 1967 (2267)
|++++||+++|||+|||+|+||||||+++++++.++||||+++++.|+..+++||+|+|++++|+||||++|++|++|||
T Consensus 408 E~~~~~g~~iVtG~ARl~G~pVGVIAn~~~~v~~~~padP~~~~~~e~~~~~~gG~l~~~~a~KaarfI~~cd~f~iPlv 487 (793)
T 2x24_A 408 EIMVPWAQTVVTGRARLGGIPVGVIAAETRTVELVVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLM 487 (793)
T ss_dssp EESCSSCTTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTSTTCCCEEEEECTTEECHHHHHHHHHHHHHHHTTTCCEE
T ss_pred EecCcccCcEEEEEEEECCEEEEEEEEccccccccccCCccccchhhhhhhhcCCcccHHHHHHHHHHHHHhccCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 1968 ILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 1968 ~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|+||+||++|.++|+.|++++||++++++++++||+|++|+|.|+++||||+++++++++|+||+||||+|++|||+||
T Consensus 488 ~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~VM~pE 567 (793)
T 2x24_A 488 IFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASVLEPE 567 (793)
T ss_dssp EECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEESSCHH
T ss_pred EEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEecCCcccchhHHhhhcccCccHHHHhhhccCEEEecCHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred chhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHc
Q 000092 2048 GMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAK 2127 (2267)
Q Consensus 2048 gav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~ 2127 (2267)
|+|+|+||++++.++|+|+|+++++|++++... +.+++++++++++|++|+++++|+|+|+|.+|+|+||+|.||+++
T Consensus 568 gaa~Il~r~~~l~~~m~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~re~~~~p~y~~~a~~y~~~~~~p~r~a~~ 645 (793)
T 2x24_A 568 GTVEIKYQKKDLVKTIRRLDPISKKLVEQLGVS--ELSDTDRKELEGQLKAREDLLLPMYHQVALHFADLHDTAGRMLEK 645 (793)
T ss_dssp HHHHHHSCHHHHHHHHHHHCSSCC-----------------------CCHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHhhhhHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcCCHHHHHHc
Confidence 999999999988899999999999999887654 234456777888888899999999999999999999999999999
Q ss_pred CCcccccCccchHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhcccccccCCCCccCchhhHHhhc-C
Q 000092 2128 GVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD-D 2206 (2267)
Q Consensus 2128 G~Id~ii~~~~~R~~~~~~L~r~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~w~~-~ 2206 (2267)
|+||+||+|++||++|+|+|+|+|.|+.+++++.++++ .+++.+++++|++||.++. ++.....|+||+.|++|++ +
T Consensus 646 G~Id~VIdp~~TR~~l~~~L~~~l~e~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~d~~~~~w~~~~ 723 (793)
T 2x24_A 646 GVIYDILEWKTARSFLYWRLRRLLLESQVKQEVLRACP-ELSHMHVQSMLRRWFVETE-GAVKAYLWDNNQTVVQWLEAH 723 (793)
T ss_dssp TSSSEEECHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHH-CTTSGGGGGCHHHHHHHHHHC
T ss_pred CcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhcc-cccccccccccHHHHHHHHhc
Confidence 99999999999999999999999999999999999877 5899999999999997754 3444568999999999999 4
Q ss_pred c-------hHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHHHHHHhhcCCHHHHHHHHHHHHh
Q 000092 2207 S-------RNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISK 2264 (2267)
Q Consensus 2207 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 2264 (2267)
. +.++++|++||++++.++|.++++++ ++.+++ |+..++++||+++|+++++.|++
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 786 (793)
T 2x24_A 724 GQASDVLHSTIRENITCLRRDSALKTIQGLVQEN-PELAMD-SLVYVSQHISPAERAQVIHLLST 786 (793)
T ss_dssp C----------------------------------------------------------------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cHhHHH-HHHHHHhhCCHHHHHHHHHHHhc
Confidence 3 34899999999999999999999998 777777 99999999999999999999964
No 3
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=100.00 E-value=1.1e-98 Score=992.54 Aligned_cols=632 Identities=29% Similarity=0.469 Sum_probs=498.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|++|+++|++||++|++++ ++++|.+++++++++||+++++++.+..++|+|.+.|+++
T Consensus 1 m~~kiLIanrGeia~riiraar~lGi~~v-----------av~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~ 69 (681)
T 3n6r_A 1 MFNKILIANRGEIACRVIKTARKMGISTV-----------AIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAA 69 (681)
T ss_dssp -CCCBCBSCCHHHHHHHHHHHGGGSCCBC-----------CEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 78999999999999999999999999997 5566888999999999999999888888899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+|||||++|++.+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 70 a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~-------------- 135 (681)
T 3n6r_A 70 IRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYM-------------- 135 (681)
T ss_dssp HHHTCCSCCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC----------------
T ss_pred HHHhCcCEEEECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+..++. +.+++||+|+++++|
T Consensus 136 -------~~~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~re 208 (681)
T 3n6r_A 136 -------GLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208 (681)
T ss_dssp --------------------------------------------------------------------------CCSCEE
T ss_pred -------cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcE
Confidence 126788899999999999999999999999999999999999999998876643 458999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++|++++|++|++++++.|||++||+|||+++++|++.+++++.++|.+.+.++++++||+|++++||++++ +|+||||
T Consensus 209 i~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg~~~~l 287 (681)
T 3n6r_A 209 IEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKNFYFL 287 (681)
T ss_dssp EEEEEECCSSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TSCCCCC
T ss_pred EEEEEEEeCCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999989999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++||+||+++|+|++++++++++|.|++. .+....+.||+|
T Consensus 288 EiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~~--------------------------------~~~~~~~~g~ai 335 (681)
T 3n6r_A 288 EMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLSI--------------------------------TQGDVKLTGWAI 335 (681)
T ss_dssp EEECSCCTTHHHHHHHHTCCHHHHHHHHHTSCCCSS--------------------------------CTTTCCCCSEEE
T ss_pred ecccccCCCcHHhHHHhCCCHHHHHHHHHCCCCCCC--------------------------------CccccceeEEEE
Confidence 999999999999999999999999999999999863 233456789999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccC-C-------------------CcEEEEEeeeeCCcccccCCcccEEEEEEeCC
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKS-K-------------------PNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s-~-------------------~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2267)
++|+|+|||.++|.|++|+|..+.+|. + ++|++++++.+|+.|+++||||+||||+||+|
T Consensus 336 ~~ri~aedp~~~f~p~~G~i~~~~~p~~~~~~~~~~~~~w~~d~~~~~~~vr~d~~~~~g~~v~~~yd~~iak~i~~g~~ 415 (681)
T 3n6r_A 336 ENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPT 415 (681)
T ss_dssp EEEEESEEGGGTTEECCEECSCEECCCC--------------------CCEEEEESCCTTCEECTTSCCEEEEEEEEESS
T ss_pred EEEEecCCcccccCCCCcEEEEEECCCCCcccccccccccccccccCCCcEEEEccccCCCccCCCCCCceeEEEEEcCC
Confidence 999999999999999999999999887 3 37999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhhhhhhccCCCCchh----HHHhhHHHHHHH
Q 000092 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYL----SVVGGALYKASA 578 (2267)
Q Consensus 503 reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~----~~~~~a~~~~~~ 578 (2267)
|++|+++|.+||+++.|+| ++||++||++||++|+|++|+++|+|||+++++.+....++... +++|+++..+.
T Consensus 416 r~~a~~~~~~al~~~~i~g-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 493 (681)
T 3n6r_A 416 RAAAIEAMRIALDSFEVEG-IGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLPETDLRRVAAAAAAMHRVA- 493 (681)
T ss_dssp HHHHHHHHHHHHHHCEECS-SCCSHHHHHHHHHCHHHHHCCCCSSHHHHHCTTSCCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCEEEC-ccCCHHHHHHHhCCHhhccCCcccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999 99999999999999999999999999999998877665555322 22222222221
Q ss_pred hhhhhhhccccccccCCCCCCcccccceeeeEeecCeEEEEEEEeecCceEEEEE-CCeEEEEEEEEecCCc--eEEEeC
Q 000092 579 SSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRM-NESEIEAEIHTLRDGG--LLMQLD 655 (2267)
Q Consensus 579 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vel~~~g~~Y~v~v~~~g~~~y~v~i-nG~~~~V~v~~l~dg~--~~v~~~ 655 (2267)
......+ .|+.+... ........+.++|.+|.+++++ +++.|.+.+ ||..+.+.. .+.++. +.+.+|
T Consensus 494 --~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 563 (681)
T 3n6r_A 494 --EIRRTRV-----SGRMDNHE-RRVGTEWVVTLQGADFPVTIAA-DHDGSTVSFDDGSSMRVTS-DWTPGDQLANLMVD 563 (681)
T ss_dssp --HHHHTTC-----TTCCTTCC-CCCCSEEEEECSSCEEEEEEEE-CSSCEEEEETTSCEEEEEE-CCCTTCSEEEEEET
T ss_pred --hhccccc-----ccCCCccc-cCCCcCEEEEECCEEEEEEEEE-cCCeEEEEEeCCcEEEEEE-EecCCCeEEEEEEC
Confidence 1111112 22222111 1111223344489999999987 667799999 898887764 234454 667899
Q ss_pred CceEEEEeeecccceEEEEcCceeecc-----------------cCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 656 GNSHVVYAEEEAAGTRLLIDGRTCLLQ-----------------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 656 G~s~~v~~~e~~~~~~v~v~g~t~~~~-----------------~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
|.++.+++......+++..+|.++.+. ...+++.|+|||||+|++|+|++||+|++||+|++|
T Consensus 564 G~~~~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~i 643 (681)
T 3n6r_A 564 GAPLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTI 643 (681)
T ss_dssp TEEEEEEEEEETTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CEEEEEEEEEeCCEEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCCcEEEEEEEeCCCCEEcCCCEEEEE
Confidence 999999998888889999998887653 134578899999999999999999999999999999
Q ss_pred EccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 719 EVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 719 EaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
|+|||+++|+||.+|+|+++ +++|++|+.|++|++|+
T Consensus 644 EamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 644 EAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp ECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred EecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 99999999999999999999 99999999999999985
No 4
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=100.00 E-value=1.1e-97 Score=982.07 Aligned_cols=626 Identities=28% Similarity=0.442 Sum_probs=472.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.||+||||+|+|++|++++++||++||+++ ++++|.++++.++++||+++++|+..+..+|+|.+.|++
T Consensus 26 ~m~~kILI~g~Geia~~iiraar~lGi~~v-----------av~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~ 94 (675)
T 3u9t_A 26 RSIQRLLVANRGEIACRVMRSARALGIGSV-----------AVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIA 94 (675)
T ss_dssp CCCSEEEECCCHHHHHHHHHHHHHHTCEEE-----------EEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHH
Confidence 479999999999999999999999999885 556688899999999999999998888889999999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|+++++|+|+|||||++||+.+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 95 ~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~------------- 161 (675)
T 3u9t_A 95 AALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYH------------- 161 (675)
T ss_dssp HHHHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCC-------------
T ss_pred HHHHhCcCEEEeCCcccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSR 281 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~r 281 (2267)
..+.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+..++. +.+++||+|+++++
T Consensus 162 --------~~~~s~~e~~~~a~~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~r 233 (675)
T 3u9t_A 162 --------GEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPR 233 (675)
T ss_dssp --------SCCCCTTHHHHHHHHSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCB
T ss_pred --------cCCCCHHHHHHHHHhCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCc
Confidence 125788899999999999999999999999999999999999999988776543 46899999999999
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|++|++++|++|+++++++|||++||+|||+++++|++.++++..++|.+.+.++++++||+|+++|||++++ +|+|||
T Consensus 234 eiev~v~~d~~G~vv~l~~rd~s~qr~~qk~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG~~~~ 312 (675)
T 3u9t_A 234 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RGQFFF 312 (675)
T ss_dssp CEEEEEEECSSSCEEEEEEEECCCBSSSSBCEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TSCBCB
T ss_pred EEEEEEEEcCCCCEEEEeccccceeeccceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CCCEEE
Confidence 9999999999999999999999999999999999999989999999999999999999999999999999984 678999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
||||||+|++|+++|+++|+|++++++++++|.|++. .+..+.++||+
T Consensus 313 iEiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~~--------------------------------~~~~~~~~g~a 360 (675)
T 3u9t_A 313 MEMNTRLQVEHPVTEAITGLDLVAWQIRVARGEALPL--------------------------------TQEQVPLNGHA 360 (675)
T ss_dssp CEEESSCCTTHHHHHHTTTCCHHHHHHHHHTTCCCSC--------------------------------CTTTCCCCSEE
T ss_pred EeccccccCCchhhhhhcCCCHHHHHHHHHCCCCCCC--------------------------------CccccccCcce
Confidence 9999999999999999999999999999999999863 22345568999
Q ss_pred EEEEEccCCCCCCCCCCCCcccccccc-CCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFK-SKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~-s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2267)
++|||++|||.++|.|++|+|..+.+| ..++||++..+.+|+.|+++|||++||||++|+||++|+++|.+||+++.|+
T Consensus 361 i~~ri~aedp~~~f~P~~G~l~~~~~p~~~~gvr~d~~~~~G~~v~~~~ds~la~vi~~g~~r~~a~~~~~~al~~~~i~ 440 (675)
T 3u9t_A 361 IEVRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVG 440 (675)
T ss_dssp EEEEEESCCTTTTSCCCCCBCSEEECCCCCTTEEEEESCCTTCBCCTTSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEEeccCcccccCCCCEEEEEECCCCCCCEEEEecccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEEEE
Confidence 999999999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcCCcccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHHhhhhh------hhccccccccC
Q 000092 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAM------VSDYIGYLEKG 594 (2267)
Q Consensus 521 G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~g 594 (2267)
| ++||++||++||++|+|++|+++|+|||+++++.+....++... ++++|+.......... .+.|.. ..|
T Consensus 441 g-~~tn~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 516 (675)
T 3u9t_A 441 G-LRTNLAFLRRILGHPAFAAAELDTGFIARHQDDLLPAPQALPEH-FWQAAAEAWLQSEPGHRRDDDPHSPWSR--NDG 516 (675)
T ss_dssp S-SCCTHHHHHHHHTCHHHHTTCCCTTHHHHTHHHHSCCCCCCCHH-HHHHHHHHHHHHCCCCCBTTBTTCGGGC--CSC
T ss_pred C-ccCCHHHHHHHhCCHHHhCCCcccchhhhcchhhcCCCCCChHH-HHHHHHHHHHHHhhhhhccccccCcccc--ccc
Confidence 9 99999999999999999999999999999998877654443332 2222221111111000 011211 122
Q ss_pred CCCCCcccccceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEE
Q 000092 595 QIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLI 674 (2267)
Q Consensus 595 ~~~~~~~~~~~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v 674 (2267)
+-. .....+.++|.++|.+|.+++++.++ |. + .+.++.+.+.+||.++.+++......+++..
T Consensus 517 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~ 579 (675)
T 3u9t_A 517 WRS---ALARESDLMLRCRDERRCVRLRHASP--SQ---------Y---RLDGDDLVSRVDGVTRRSAALRRGRQLFLEW 579 (675)
T ss_dssp CCS---SSCEEEECCEEETTEEECCEEEESSS--CS---------E---EEETTEEEEEETTEEEEEEEEEETTEEEEEC
T ss_pred ccc---cCCccEEEEEEECCEEEEEEEEEcCC--eE---------E---EecCCeEEEEECCEEEEEEEEEeCCEEEEEE
Confidence 211 12245678899999999999987664 21 1 2456667888888888888877777888888
Q ss_pred cCceeeccc----------CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC
Q 000092 675 DGRTCLLQN----------DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ 743 (2267)
Q Consensus 675 ~g~t~~~~~----------~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~ 743 (2267)
+|.++.+.. ..+++.|+|||||+|++|+|++||+|++||+|++||+|||+++|+||.+|+|+++ +++|+
T Consensus 580 ~g~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~ 659 (675)
T 3u9t_A 580 EGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGE 659 (675)
T ss_dssp SSSEEEEEECCHHHHHC---------------------------------------------------------------
T ss_pred CCeEEEEEEcCcccccccccCCCCeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcC
Confidence 888777642 3346789999999999999999999999999999999999999999999999988 99999
Q ss_pred ccCCCCEEEEEecC
Q 000092 744 AMQAGELIARLDLD 757 (2267)
Q Consensus 744 ~v~~G~~La~l~~~ 757 (2267)
+|+.|++|++|+.+
T Consensus 660 ~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 660 LVEEGTPLVELDEN 673 (675)
T ss_dssp --------------
T ss_pred CcCCCCEEEEEecC
Confidence 99999999999865
No 5
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=4e-96 Score=948.09 Aligned_cols=553 Identities=54% Similarity=0.943 Sum_probs=469.6
Q ss_pred cccccCCC-CCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEE
Q 000092 7 RSAMAGLG-RGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVA 85 (2267)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~ 85 (2267)
|++|+|+. ..+++...+.+...+..++++++||++.||++||+||||+|||++|+++||+||+|||++|++|++|++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVa 93 (587)
T 3jrx_A 14 RPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVV 93 (587)
T ss_dssp -------------------CCTTCCCCSSHHHHHHHTTCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEE
T ss_pred CCCCCcchhhcCchhhhhhhhccceeecCHHHHHHhcCCCcccCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEE
Confidence 56899997 22233333566678889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHH
Q 000092 86 MATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPAT 165 (2267)
Q Consensus 86 ~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~e 165 (2267)
|++++|.+++++++++||+++++|++++.++|+|++.|+++|++.++|+|||||||++||+.+++.|++.|++|+||+++
T Consensus 94 v~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ 173 (587)
T 3jrx_A 94 MVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSE 173 (587)
T ss_dssp EECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHH
T ss_pred EecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHH
Confidence 99988888999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCC------CCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 166 SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP------ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 166 am~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~------~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
+++.++||..+|++++++|||+|||..++++++. .+..+.+|+++|.++++.+.+++.++++++||||||||+.
T Consensus 174 ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~ 253 (587)
T 3jrx_A 174 AMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASE 253 (587)
T ss_dssp HHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETT
T ss_pred HHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCC
Confidence 9999999999999999999999999864332211 1245678999999999999999999999999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCC
Q 000092 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2267)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~ 319 (2267)
|+||+||++|++.+||.++++.+..+..++++|||+|+++++|++|++++|++|+++++++|||++||+|||+++++|++
T Consensus 254 GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~ 333 (587)
T 3jrx_A 254 GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPAT 333 (587)
T ss_dssp CCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCC
T ss_pred CCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCC
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 320 ~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
.+++++.++|.+.|.++++++||+|+++|||++++ +|+|||||||||+|++|++||+++|+|++++|+++++|.||+.+
T Consensus 334 ~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~ 412 (587)
T 3jrx_A 334 IAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRL 412 (587)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECS-SSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccc
Confidence 88999999999999999999999999999999984 68899999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEee
Q 000092 400 PEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479 (2267)
Q Consensus 400 pdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v 479 (2267)
+|||.+||..|.+ ++.|+|.. ....+.++||||+||||||||.++|.|++|+|+.+++|++++||+++++
T Consensus 413 ~di~~~~~~~~~~---------~~~~~~~~-~~~~~~~~ghaie~Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~ 482 (587)
T 3jrx_A 413 KDIRLLYGESPWG---------VTPISFET-PSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSV 482 (587)
T ss_dssp HHHHHHTTCCTTC---------CCCCCSSS-CSSCCCCCSEEEEEEEEC----------CCCCEEEECSSCTTEEEEECC
T ss_pred hhccccccccccc---------cccccccc-ccccCCCCceEEEEeecccCccccCCCCCcEEEEEEeCCCCceEEeccc
Confidence 9999999999986 77888752 1123678999999999999999999999999999999999999999988
Q ss_pred eeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhhhhhhcc
Q 000092 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRA 559 (2267)
Q Consensus 480 ~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~ 559 (2267)
..++.|++|||||+||||+||+||++|+++|.+||+++.|+|.|+||++||++||++|+|++|+++|+|||+++++++..
T Consensus 483 ~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~g~~~t~~~~~~~~~~~~~ 562 (587)
T 3jrx_A 483 AATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLIAEKVQA 562 (587)
T ss_dssp C----------CCEEEEEEEESSHHHHHHHHHHHHHHHHHSSTTSSTTHHHHHHHTSHHHHTTCSCCGGGGC--------
T ss_pred cccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccEEeCCCCCcHHHHHHHhCChhhccCCcchhHHhHhhhhhccc
Confidence 88888999999999999999999999999999999999999977999999999999999999999999999999999988
Q ss_pred CCCCchhHHHh
Q 000092 560 ERPPWYLSVVG 570 (2267)
Q Consensus 560 ~~~~~~~~~~~ 570 (2267)
++|+++++++-
T Consensus 563 ~~~~~~~~~~~ 573 (587)
T 3jrx_A 563 EKPDIMLGVLE 573 (587)
T ss_dssp -----------
T ss_pred CCCcchhhhhh
Confidence 89998887653
No 6
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=100.00 E-value=9e-90 Score=886.56 Aligned_cols=514 Identities=56% Similarity=0.978 Sum_probs=435.7
Q ss_pred CcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEc
Q 000092 29 PAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEV 108 (2267)
Q Consensus 29 ~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~v 108 (2267)
+..++++++||++.||++||+||||+|||++|+++||+||+|||++|+++++|++|+|++++|.+++++++++||+++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i 100 (540)
T 3glk_A 21 DFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 100 (540)
T ss_dssp CCCCSSHHHHHHHTTCSCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEEC
T ss_pred CccccCHHHHHHhcCCcccccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCC
Q 000092 109 PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2267)
Q Consensus 109 p~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtp 188 (2267)
|++++.++|+|++.|+++|++.++|+|||||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+|
T Consensus 101 ~~~~~~~sy~d~~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp 180 (540)
T 3glk_A 101 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTL 180 (540)
T ss_dssp CCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBC
T ss_pred CCCCcccccccHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCC
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCC------CCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH
Q 000092 189 PWSGSHVKIPP------ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262 (2267)
Q Consensus 189 p~~~~~~~~~~------~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~ 262 (2267)
||..++++++. ....+.+|++.|.++++.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~ 260 (540)
T 3glk_A 181 PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQV 260 (540)
T ss_dssp CBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHH
T ss_pred CcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHH
Confidence 99763332111 123456888899999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCc
Q 000092 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342 (2267)
Q Consensus 263 ~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy 342 (2267)
..+..+++++||+|++|++|++|++++|++|+++++++|||++|++|||+++++|++.++++..++|.+.|.++++++||
T Consensus 261 ~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~ 340 (540)
T 3glk_A 261 QSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGY 340 (540)
T ss_dssp HHHSTTCCEEEEECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99888889999999999899999999999999999999999999999999999999988999999999999999999999
Q ss_pred eeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
+|+++|||++++ +|++||||||||+|++|++||+++|+|++++|+++++|.|++.+++||.+||..|.+ +
T Consensus 341 ~G~~~VEf~~d~-dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~---------~ 410 (540)
T 3glk_A 341 VSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWG---------V 410 (540)
T ss_dssp CEEEEEEEEEET-TSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSC---------C
T ss_pred ccceEEEEEEcC-CCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCccccccccccccccccc---------c
Confidence 999999999984 688999999999999999999999999999999999999999999999999998875 6
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCC
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2267)
..+.|.. ....+.++||+|+||||||||.++|.|++|+|+.+.+|++++||+++++..++.|++|||||+||||+||+|
T Consensus 411 ~~~~~~~-~~~~~~~~g~aie~ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~ 489 (540)
T 3glk_A 411 TPISFET-PSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGEN 489 (540)
T ss_dssp SCCCSCC-C----CCCSEEEEEEEC------------CCEEECCCSSCCSEEEEEEC------------CEEEEEEEESS
T ss_pred ccccccc-ccccCCCceeEEEEEEeccCCcccccCCceEEEEEEcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCC
Confidence 6777642 112367899999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 503 reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
|++|+++|.+||+++.|+|.|+||++||++||++|+|++|+++|+|||++|
T Consensus 490 r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 540 (540)
T 3glk_A 490 REEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLI 540 (540)
T ss_dssp HHHHHHHHHHHHHHHTCC----HHHHHHHHHHHSHHHHHTCC---------
T ss_pred HHHHHHHHHHHHhccEEecccCCcHHHHHHHhCChhhcCCCccchhhhhcC
Confidence 999999999999999999966999999999999999999999999999875
No 7
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=100.00 E-value=4.2e-78 Score=766.93 Aligned_cols=475 Identities=23% Similarity=0.349 Sum_probs=408.1
Q ss_pred ccccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCC
Q 000092 1504 AQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPG 1583 (2267)
Q Consensus 1504 ~py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g 1583 (2267)
.-|..++.|+.||.+|+..|+ +.++.++|++..-. .-+-.++.||+ | .|.|++...+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~g~----------~~~~~~~~~~g~l~-------areRi~~LlD~--g----sF~E~~~~~~ 70 (527)
T 1vrg_A 14 SLRDKIEELKKIEKEIEQGGG----------PEKVEKQHRAGKLT-------AWERLELLLDP--G----TFVEIDKFVE 70 (527)
T ss_dssp CHHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHTTCCC-------HHHHHHHHSCT--T----CCEEECTTCC
T ss_pred hHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHhcCCCC-------HHHHHHHHccC--C----ceEEcccccc
Confidence 346788999999999999998 67889999754210 01222344554 3 2444432222
Q ss_pred C------------CceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCC
Q 000092 1584 L------------NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSG 1651 (2267)
Q Consensus 1584 ~------------n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssG 1651 (2267)
. ...|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.+.|+|+|+|+||||
T Consensus 71 ~~~~~f~~~~~~~~~dgvVtG~G~i------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgG 144 (527)
T 1vrg_A 71 HRNTYFGLDKVKLPRDGVITGVGEI------NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGG 144 (527)
T ss_dssp CCCCGGGGGGCCCGGGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECS
T ss_pred cCCcccCcccccCCCCcEEEEEEEE------CCEEEEEEEEeccccCccccHHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 1 237899999976 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccc
Q 000092 1652 ARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGA 1731 (2267)
Q Consensus 1652 ARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~ 1731 (2267)
|||| |++.++++++ .+| ..|.+.||.
T Consensus 145 AR~q--eg~~~l~g~~------------~~~----------------------------------------~~~~~~s~~ 170 (527)
T 1vrg_A 145 ARIQ--EGVDALAGYG------------EIF----------------------------------------LRNTLASGV 170 (527)
T ss_dssp BCGG--GTHHHHHHHH------------HHH----------------------------------------HHHHHHTTT
T ss_pred CCcc--chhHHHHHHH------------HHH----------------------------------------HHHHHhCCC
Confidence 9999 8888876554 111 112223333
Q ss_pred ccccccccccCceEEEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCc
Q 000092 1732 IAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGV 1809 (2267)
Q Consensus 1732 iag~~s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv 1809 (2267)
+|+|++|||||+|||||.++|||++||+++ +.|+|+||++|++++|+++ ++++|||+++|. +||+
T Consensus 171 -----------iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~aGP~vi~~~~ge~v--~~e~lggae~~~~~~G~ 237 (527)
T 1vrg_A 171 -----------VPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEEI--SQEDLGGAMVHNQKSGN 237 (527)
T ss_dssp -----------SCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCC
T ss_pred -----------CCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEecCHHHHHHHhCCCC--CccccccHHHHhhcccc
Confidence 699999999999999999999999999999 8999999999999999999 778999999998 7999
Q ss_pred eEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccCCC---CCCChHHHhcccccCCCCccccccc
Q 000092 1810 VHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFD 1882 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D 1882 (2267)
+|++++||.++++.+++||+|+|+++.+.+|..++.|| ++. ..++|. +|||+|++|+. |||
T Consensus 238 vd~vv~d~~~~~~~~~~~Ls~lp~~~~~~~~~~~~~dp-~~~~~~l~~~vp~~~~~pyd~r~~I~~-----------l~D 305 (527)
T 1vrg_A 238 AHFLADNDEKAMSLVRTLLSYLPSNNAEEPPVEDPDTS-LETPEDILDILPDNPNKGYDVRDVIKR-----------VVD 305 (527)
T ss_dssp CSEEESSHHHHHHHHHHHHTTSCSSTTSCCCBCSCCCC-CCCCGGGGGSSCSSTTSCCCTHHHHHH-----------HSG
T ss_pred eEEEecCHHHHHHHHHHHHHhcCccCcccCCCCCCCCC-CcChHHHhhhccCCCCCCcCHHHHHHH-----------hcC
Confidence 99999999999999999999999988888887777776 443 567887 89999999997 899
Q ss_pred CCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhccc
Q 000092 1883 KDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNRE 1962 (2267)
Q Consensus 1883 ~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~ 1962 (2267)
++||+|+...|++++|||+|||+|+||||||++++. .||+|++++++|++|||++|+++
T Consensus 306 ~g~f~E~~~~~~~~vV~G~ari~G~~V~via~~~~~---------------------~~G~~~~~~~~Kaar~i~~a~~~ 364 (527)
T 1vrg_A 306 HGEFFEVQPYFAKNIVIGFARIQGKTVGIVANQPSV---------------------LAGVLDIDSSDKAARFIRFLDAF 364 (527)
T ss_dssp GGCCEEESTTSSTTEEEEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCCCcCcEEEEEEEECCEEEEEEEEcCcc---------------------cCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999997653 38999999999999999999999
Q ss_pred CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEE
Q 000092 1963 ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKG 2041 (2267)
Q Consensus 1963 ~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~ 2041 (2267)
++|||+|+||+||++|.++|..|+++++|++++++++++||+|++|+ |+++||+|++|++ .+++|+ +||||+|++
T Consensus 365 ~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~--g~~~gGg~~am~~~~~~~d~--~~a~p~a~~ 440 (527)
T 1vrg_A 365 NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVIL--RKAYGGAYIAMGSKHLGADM--VLAWPSAEI 440 (527)
T ss_dssp TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEE
T ss_pred CCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEe--CCcccHHHHHhcCCCCCCCE--EEEcCCCeE
Confidence 99999999999999999999999999999999999999999999999 8889999999997 599998 999999999
Q ss_pred EeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcH
Q 000092 2042 NVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTS 2121 (2267)
Q Consensus 2042 gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~ 2121 (2267)
+||+|||+|+|+||++ ++.+ .+++ +++ ++++.+|++.|++|
T Consensus 441 ~Vm~pegaa~Il~r~~--~~~~--------------------~d~~---~~~--------------~~~~~~y~~~~~~p 481 (527)
T 1vrg_A 441 AVMGPEGAANIIFKRE--IEAS--------------------SNPE---ETR--------------RKLIEEYKQQFANP 481 (527)
T ss_dssp ESSCHHHHHHHHTHHH--HHHS--------------------SCHH---HHH--------------HHHHHHHHHHTSSH
T ss_pred EecCHHHHHHHHhhhh--hhcc--------------------cCHH---HHH--------------HHHHHHHHHhhCCH
Confidence 9999999999999976 1110 0111 111 24567899999999
Q ss_pred HHHHHcCCcccccCccchHHHHHHHHHHH
Q 000092 2122 LRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2122 ~rm~~~G~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
.++++.|+||+||+|++||++|+++|+..
T Consensus 482 ~~~~~~g~iD~II~p~~tR~~l~~~L~~l 510 (527)
T 1vrg_A 482 YIAASRGYVDMVIDPRETRKYIMRALEVC 510 (527)
T ss_dssp HHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCCCeeeCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999754
No 8
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=100.00 E-value=2.4e-76 Score=812.06 Aligned_cols=447 Identities=30% Similarity=0.503 Sum_probs=403.7
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000092 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~I 123 (2267)
|+||+||||+|+|++|++++|+|+++|++++ +++++.+..+.+.++||+++++|+. ....+|+|++.|
T Consensus 1 M~~~kkVLIagrGeia~riiraa~elGi~vV-----------av~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~I 69 (1150)
T 3hbl_A 1 MKQIKKLLVANRGEIAIRIFRAAAELDISTV-----------AIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERI 69 (1150)
T ss_dssp --CCCEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EEEcCCcccchhhhhcceeeecCCCCCccccccCHHHH
Confidence 4689999999999999999999999998885 4445677889999999999999875 445799999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++|+++++|+|+||||+++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||..
T Consensus 70 i~~a~~~~~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~----------- 138 (1150)
T 3hbl_A 70 IDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTD----------- 138 (1150)
T ss_dssp HHHHHHTTCSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCS-----------
T ss_pred HHHHHHhCCCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccc
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQ 279 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g 279 (2267)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+.+++. +.+++||+|++|
T Consensus 139 ----------~~v~s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G 208 (1150)
T 3hbl_A 139 ----------GPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDN 208 (1150)
T ss_dssp ----------SCBCSSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSS
T ss_pred ----------cCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCC
Confidence 115677777888899999999999999999999999999999999998876654 468999999999
Q ss_pred cceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~ 359 (2267)
++|++|++++|++|+++++++|+|++|++|||.++.+|++.++++..++|.+.+.++++++||+|++|+||+++ ++++
T Consensus 209 ~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd--~d~~ 286 (1150)
T 3hbl_A 209 PKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEF 286 (1150)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE--TTEE
T ss_pred CcEEEEEEEEeCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE--CCeE
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999 3499
Q ss_pred EEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000092 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2267)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~G 439 (2267)
||||||||+|++|+++|+++|+|++++++++++|.+++.. .+.+ +.+..+.++|
T Consensus 287 y~iEINpR~~g~~~vte~~tGvDlv~~~i~ia~G~~L~~~------------------------~~~~--~~q~~i~~~G 340 (1150)
T 3hbl_A 287 FFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGE------------------------EINM--PQQKDITTLG 340 (1150)
T ss_dssp EEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTST------------------------TTCC--CCGGGCCCCS
T ss_pred EEEEEeCCCCCCcceeehhcCCCHHHHHHHHHCCCCCCcc------------------------cccc--ccccccccce
Confidence 9999999999999999999999999999999999998631 0011 0234566789
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 440 hai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
|+|+||||+|||..+|.|++|+|+.+.+|.+++|+++.+ +.+|..|+++|||++||||+||+||++|+++|.+||+++.
T Consensus 341 ~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~ 420 (1150)
T 3hbl_A 341 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMR 420 (1150)
T ss_dssp EEEEEEECSEEGGGTSEECCCCCCEEECCCCTTEEEEESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCE
T ss_pred EEEEEEEeccCCccccCCCCceEEEEEcCCCCceeccccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceE
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
|+| ++||++||+++|+||+|++|+++|+|||++
T Consensus 421 i~G-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 453 (1150)
T 3hbl_A 421 IRG-VKTNIPFLINVMKNKKFTSGDYTTKFIEET 453 (1150)
T ss_dssp EES-SCCSHHHHHHHHHCHHHHHSCCCTTHHHHC
T ss_pred EeC-ccCCHHHHHHHhCCHHHcCCCcccchhhCC
Confidence 999 999999999999999999999999999974
No 9
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=100.00 E-value=2.2e-77 Score=759.81 Aligned_cols=417 Identities=22% Similarity=0.341 Sum_probs=375.0
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+|+|
T Consensus 82 ~dgvvtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGGARmq--eg~~sl~~ 153 (523)
T 1on3_A 82 ADGVVTGRGTI------LGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQ--EGIDSLSG 153 (523)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChh--hHHHHHHH
Confidence 47799999976 99999999999999999999999999999999999999999999999999999 88999877
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
|+ .+| ..+.+.||. ||+
T Consensus 154 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 170 (523)
T 1on3_A 154 YG------------KMF----------------------------------------FANVKLSGV-----------VPQ 170 (523)
T ss_dssp HH------------HHH----------------------------------------HHHHHHTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHhcCC-----------CCE
Confidence 65 111 011122332 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~i 1824 (2267)
|+++||||+||+||+++|||++||++++.|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++.+
T Consensus 171 Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~aGP~vI~~~~ge~~--~~e~lggae~h~~~~G~vd~vv~d~~~~~~~~ 248 (523)
T 1on3_A 171 IAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIA 248 (523)
T ss_dssp EEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCC--CHHHHHSHHHHHHTTCCCSEEESSHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHhhCCeEEEeCCCEEEecCHHHHHHHhCCcC--ChHhcccHHHHhhccCceEEEeCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 778999999998 7999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCC---CCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceEE
Q 000092 1825 LKWLSYVPPHIGGALPIISPLDPPDR---PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVV 1898 (2267)
Q Consensus 1825 ~~~LsylP~~~~~~~p~~~~~d~~~r---~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vV 1898 (2267)
++||+|+|+++.+.+|..++.|++++ ...++|. ++||+|++|++ |||++||+|++++||+++|
T Consensus 249 r~lL~~lp~~~~~~~p~~~~~d~p~~~~~l~~~vp~~~~~~~d~r~~I~~-----------l~D~g~f~E~~~~~~~~iv 317 (523)
T 1on3_A 249 KKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAK-----------IVDWGDYLEVKAGYATNLV 317 (523)
T ss_dssp HHHHHTSCSSTTSCCCCCSCCCCCCCCGGGGGTSCSSTTCCCCTHHHHHH-----------HSGGGCEEEESTTSSTTEE
T ss_pred HHHHHhcCccCcccCCCCCCCCCccchhhhhhhcCCCCCCCCCHHHHHHH-----------hCCCCeEEEecCCCcCcEE
Confidence 99999999998888887777777766 4567887 89999999997 8999999999999999999
Q ss_pred EEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCc
Q 000092 1899 TGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGG 1978 (2267)
Q Consensus 1899 tG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G 1978 (2267)
||+|||+|+||||||++++. .||+|++++++|++|||++|+++++|||+|+||+||++|
T Consensus 318 ~G~ari~G~~Vgvian~~~~---------------------~~G~~~~~~a~Kaar~i~~~~~~~iPlv~lvDtpGf~~G 376 (523)
T 1on3_A 318 TAFARVNGRSVGIVANQPSV---------------------MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPG 376 (523)
T ss_dssp EEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCC
T ss_pred EEEEEECCEEEEEEEecCCc---------------------cCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcCcc
Confidence 99999999999999997543 379999999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccchhhhhcchh
Q 000092 1979 QRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 1979 ~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
.++|..|+++++|++++++++++||+|++|+ |+++||+|+++++ .+++|+ +||||+|+++||+|||+|+|+||++
T Consensus 377 ~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~--g~~~Ggg~~am~~~~~~~d~--~~a~p~a~~~Vm~pegaa~Il~r~~ 452 (523)
T 1on3_A 377 VQQEYGGIIRHGAKMLYAYSEATVPKITVVL--RKAYGGSYLAMCNRDLGADA--VYAWPSAEIAVMGAEGAANVIFRKE 452 (523)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHTTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHH
T ss_pred hHHHHhhHHHHHHHHHHHHhcCCCCEEEEEe--CCcccHHHHHhcccCCCCCE--EEEcCCCeEEecCHHHHHHHHhhhh
Confidence 9999999999999999999999999999999 7889999999987 499998 9999999999999999999999975
Q ss_pred hhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCcc
Q 000092 2058 ELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD 2137 (2267)
Q Consensus 2058 ~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~ 2137 (2267)
. + +. .+++ +++ +|++.+|++.|++|.++++.|+||+||+|+
T Consensus 453 ~--~-----------------~~---~d~~---~~~--------------~~~~~~y~~~~~~p~~~a~~g~iD~II~p~ 493 (523)
T 1on3_A 453 I--K-----------------AA---DDPD---AMR--------------AEKIEEYQNAFNTPYVAAARGQVDDVIDPA 493 (523)
T ss_dssp H--H-----------------HS---SCHH---HHH--------------HHHHHHHHHHHSSHHHHHHTTSSSEECCGG
T ss_pred h--h-----------------cc---cCHH---HHH--------------HHHHHHHHHhhCCHHHHHhcCCCCEeeCHH
Confidence 1 1 10 0111 111 345678999999999999999999999999
Q ss_pred chHHHHHHHHHHH
Q 000092 2138 KSRSFFCRRLRRR 2150 (2267)
Q Consensus 2138 ~~R~~~~~~L~r~ 2150 (2267)
+||++|+++|+..
T Consensus 494 ~tR~~l~~~L~~l 506 (523)
T 1on3_A 494 DTRRKIASALEMY 506 (523)
T ss_dssp GHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999754
No 10
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=100.00 E-value=4.8e-77 Score=758.08 Aligned_cols=420 Identities=23% Similarity=0.355 Sum_probs=372.0
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.++++
T Consensus 95 ~dgvVtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGGARmq--eg~~sl~~ 166 (548)
T 2bzr_A 95 GDGVVTGYGTI------DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQ--EGVVSLGL 166 (548)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCSCCGG--GTTHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEcCccccCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCCCCch--hHHHHHHH
Confidence 47799999876 99999999999999999999999999999999999999999999999999999 88888876
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
|+ .+| ..+.+.||. ||+
T Consensus 167 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 183 (548)
T 2bzr_A 167 YS------------RIF----------------------------------------RNNILASGV-----------IPQ 183 (548)
T ss_dssp HH------------HHH----------------------------------------HHHHHTTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHhcCC-----------CcE
Confidence 55 111 112223443 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++|||||+||+||+++|||++||+++ +.|+|+||++|++++|+++ +.++|||+++|. +||++|++++||.++++.
T Consensus 184 Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~aGP~vI~~~~ge~v--~~e~lggae~h~~~sG~~d~vv~d~~~~~~~ 261 (548)
T 2bzr_A 184 ISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDY 261 (548)
T ss_dssp EEEECSEEESGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSSCCSEEESSHHHHHHH
T ss_pred EEEecCCCchHHHHHHHhCCeEEeccCceeEEeccHHHHHHHhCCcC--ChHhcccHHHHhhccCceeEEeCCHHHHHHH
Confidence 999999999999999999999999998 8999999999999999999 778999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCC-------CCCCC----CCccCCC---CCCChHHHhcccccCCCCcccccccCCCceec
Q 000092 1824 ILKWLSYVPPHIGGALPIISPL-------DPPDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVET 1889 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~-------d~~~r----~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~ 1889 (2267)
+++||+|+|+++.+.+|..++. ||+++ ...++|. +|||+|++|+. |||++ |+|+
T Consensus 262 ~r~lls~lp~~~~~~~p~~~~~~~~~~~~d~p~~~~~~l~~~vp~~~~~pyd~r~~I~~-----------l~D~~-f~E~ 329 (548)
T 2bzr_A 262 VRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITR-----------LLDDE-FLEI 329 (548)
T ss_dssp HHHHHTTSCSSTTSCCCCCCCCCCCSSGGGSCCHHHHHGGGTSCSSTTCCCCTHHHHHH-----------HSSSC-CEEE
T ss_pred HHHHHHhcCccCcccCCCCCccccccccCCCCCCChHHHhhhCCCCCCCCCCHHHHHHH-----------HcCCC-eEEe
Confidence 9999999999888877776664 66654 3567887 89999999997 89998 9999
Q ss_pred cccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEE
Q 000092 1890 LEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFIL 1969 (2267)
Q Consensus 1890 ~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l 1969 (2267)
.+.|++++|||+|||+|+||||||++++. .||+|++++++|++|||++|+++++|||+|
T Consensus 330 ~~~~~~~vV~G~ari~G~~Vgvian~~~~---------------------~~G~l~~~~a~Kaar~i~~a~~~~iPlv~l 388 (548)
T 2bzr_A 330 QAGYAQNIVVGFGRIDGRPVGIVANQPTH---------------------FAGCLDINASEKAARFVRTCDCFNIPIVML 388 (548)
T ss_dssp STTSSTTEEEEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccCccEEEEEEEECCEEEEEEEECCcc---------------------cCCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999997653 389999999999999999999999999999
Q ss_pred ecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccc
Q 000092 1970 ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 1970 ~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
+||+||++|.++|+.|++++|+++++++++++||+|++|+ |+++||+|.++++ .+++|+ +||||+|+++||+|||
T Consensus 389 vDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~--g~~~Ggg~~am~~~~~~~d~--~~awp~a~i~Vmgpeg 464 (548)
T 2bzr_A 389 VDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVIT--RKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASG 464 (548)
T ss_dssp EEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred eeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEe--CCcchHHHHHhccccCCCCE--EEEcCCCEEEecCHHH
Confidence 9999999999999999999999999999999999999999 7889999999987 599998 9999999999999999
Q ss_pred hhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcC
Q 000092 2049 MIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKG 2128 (2267)
Q Consensus 2049 av~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G 2128 (2267)
+|+|+||++. +.++ + +.++.++++ +++..+|.+.|++|.++++.|
T Consensus 465 aa~Il~r~~~--~~~~--------------~-----~g~~~~~~~--------------~~~~~~y~~~~~~p~~~a~~g 509 (548)
T 2bzr_A 465 AVGFVYRQQL--AEAA--------------A-----NGEDIDKLR--------------LRLQQEYEDTLVNPYVAAERG 509 (548)
T ss_dssp HHHHHTCCC-------------------------------CHHHH--------------HHHHHHHHHHHSBSHHHHHTT
T ss_pred HHHHHhhhHH--hhhh--------------c-----ccccHHHHH--------------HHHHHHHHHhhCCHHHHHhcC
Confidence 9999999862 1110 0 001112222 345678999999999999999
Q ss_pred CcccccCccchHHHHHHHHHHH
Q 000092 2129 VIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2129 ~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
+||+||+|++||++|+++|+..
T Consensus 510 ~iD~II~p~~tR~~l~~~L~~l 531 (548)
T 2bzr_A 510 YVGAVIPPSHTRGYIGTALRLL 531 (548)
T ss_dssp SSSEECCGGGHHHHHHHHHHHT
T ss_pred CCceeeCHHHHHHHHHHHHHHH
Confidence 9999999999999999999754
No 11
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=100.00 E-value=6.3e-77 Score=752.22 Aligned_cols=418 Identities=23% Similarity=0.345 Sum_probs=370.0
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|.+||||||| |++.++++
T Consensus 84 ~dgvVtG~G~I------~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGaRmq--Eg~~~l~~ 155 (530)
T 3iav_A 84 GDGVVTGYGTV------DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ--EGVASLGA 155 (530)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchh--hhhhhHHH
Confidence 46799999987 99999999999999999999999999999999999999999999999999998 88988866
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
++ .+| ..+.+.||. ||+
T Consensus 156 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 172 (530)
T 3iav_A 156 YG------------EIF----------------------------------------RRNTHASGV-----------IPQ 172 (530)
T ss_dssp HH------------HHH----------------------------------------HHHHHTTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHHcCC-----------CCE
Confidence 54 111 111223332 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++|+|+|+||+||+++|||++||+++ +.|+|+||++|++++|+++ +.++|||+++|. +||++|++++||.++++.
T Consensus 173 Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~aGP~vi~~~~ge~v--~~e~LGGa~~h~~~sGv~d~va~de~~a~~~ 250 (530)
T 3iav_A 173 ISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEY 250 (530)
T ss_dssp EEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEecCcchHHHHHHHhCCEEEEecCCcEEEecCHHHHHHHhCCcC--ChhhcchHHHHHhccCceeEEecChHHHHHH
Confidence 999999999999999999999999987 8999999999999999999 999999999995 899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCC--CCC----CCccCCC---CCCChHHHhcccccCCCCcccccccCCCceecccccc
Q 000092 1824 ILKWLSYVPPHIGGALPIISPLDP--PDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA 1894 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~d~--~~r----~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a 1894 (2267)
+++||||||.++.+.+|..++.|| +++ ...++|. ++||+|++|++ |||+++|+|++++||
T Consensus 251 ~r~~ls~lp~~~~~~~p~~~~~dp~~~~~~~~~l~~ivp~~~~~~yd~r~~I~~-----------l~D~~~f~E~~~~~~ 319 (530)
T 3iav_A 251 VKQLLSYLPSNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEH-----------VLDDAEFFETQPLFA 319 (530)
T ss_dssp HHHHHHHSCSSTTSCCCCCCCCCCCSCCHHHHHGGGSSCSSTTCCCCHHHHHHT-----------TSGGGCCEEESTTSC
T ss_pred HHHHHHhccccCCCCCCCCCCCCcccccCChHhHHHhccCCCCCCCCHHHHHHH-----------HcCCcceeeeccccC
Confidence 999999999998888887777776 443 3467887 99999999997 899999999999999
Q ss_pred ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCC
Q 000092 1895 RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRG 1974 (2267)
Q Consensus 1895 ~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~G 1974 (2267)
+++|||+|||+|+|||||||++. +.||+|++++++|++|||++|+++++|||+|+||+|
T Consensus 320 ~~iV~G~arl~G~~Vgvian~~~---------------------~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpG 378 (530)
T 3iav_A 320 PNILTGFGRVEGRPVGIVANQPM---------------------QFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPG 378 (530)
T ss_dssp TTEEEEEEEETTEEEEEEEECTT---------------------SGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred ceEEEEEEEECCEEEEEEEecCc---------------------ccCCCCCHHHHHHHHHHHHHHHhcCCCEEEEeeCCC
Confidence 99999999999999999999643 348999999999999999999999999999999999
Q ss_pred CCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhhhh
Q 000092 1975 FSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIK 2053 (2267)
Q Consensus 1975 f~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~I~ 2053 (2267)
|++|.++|+.|++++||++++++++++||+|++|+ |+++||+|+++++. +++|+ +||||+|+++||+|||+++|+
T Consensus 379 f~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~--g~~~GGa~~am~~~~~~~d~--~~awp~a~~~Vm~~egaa~il 454 (530)
T 3iav_A 379 FLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVIT--RKAFGGAYVVMGSKHLGADL--NLAWPTAQIAVMGAQGAVNIL 454 (530)
T ss_dssp BCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHH
T ss_pred CCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEe--CCcchHHHHHhcCCCCCCCE--EEEcCCceEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999 77799999999875 89998 999999999999999999999
Q ss_pred cchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccc
Q 000092 2054 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2133 (2267)
Q Consensus 2054 ~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~i 2133 (2267)
||++.. +. . ++.++++ .++..+|.+.+.+|+++++.|+||+|
T Consensus 455 ~r~~~~-------------------~~--~---~d~~~~~--------------~~~~~~y~~~~~~p~~aa~~~~vD~V 496 (530)
T 3iav_A 455 HRRTIA-------------------DA--G---DDAEATR--------------ARLIQEYEDALLNPYTAAERGYVDAV 496 (530)
T ss_dssp TSTTTS-------------------TT--C---TTCHHHH--------------HHHHHHHHHHHSSSHHHHHTTSSSEE
T ss_pred hhhhhh-------------------hc--c---cCHHHHH--------------HHHHHHHHHhcCCHHHHHhcCCCCcc
Confidence 998721 00 0 0111222 23445666666678899999999999
Q ss_pred cCccchHHHHHHHHHHH
Q 000092 2134 VDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2134 i~~~~~R~~~~~~L~r~ 2150 (2267)
|+|++||++|+..|+..
T Consensus 497 IdP~~TR~~l~~~l~~~ 513 (530)
T 3iav_A 497 IMPSDTRRHIVRGLRQL 513 (530)
T ss_dssp CCGGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999998653
No 12
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=100.00 E-value=3.1e-76 Score=744.84 Aligned_cols=412 Identities=24% Similarity=0.369 Sum_probs=366.6
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||++.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.++++
T Consensus 92 ~dgVVtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGGARmq--eg~~sl~~ 163 (531)
T 3n6r_B 92 GDGVVTGWGTI------NGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQ--EGVDSLAG 163 (531)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGG--GTHHHHHH
T ss_pred CCCEEEEEEEE------CCEEEEEEEECCCcccccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCccccC--cccchhhh
Confidence 46799999987 99999999999999999999999999999999999999999999999999999 88888866
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
++ .+| ..+.+.||. ||+
T Consensus 164 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 180 (531)
T 3n6r_B 164 YG------------EVF----------------------------------------QRNIMASGV-----------VPQ 180 (531)
T ss_dssp HH------------HHH----------------------------------------HHHHHTTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHHhCC-----------CCE
Confidence 54 111 122333443 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++|+|||+||+||.++|+|++||+++ +.|+|+||++|++++|+++ +.++|||+++|. +||++|++++||.++++.
T Consensus 181 Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~aGP~vI~~~~ge~v--~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~ 258 (531)
T 3n6r_B 181 ISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEQV--SAEELGGATTHTRKSSVADAAFENDVEALAE 258 (531)
T ss_dssp EEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTTSCCSEEESSHHHHHHH
T ss_pred EEEEeCCcchHHHHHhhhCCEEEEecCCceEeecCHHHHHHHhCCcc--ChhhcchHHHHhhccCcceEEeCCHHHHHHH
Confidence 999999999999999999999999997 8999999999999999999 899999999995 899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccce
Q 000092 1824 ILKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1896 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~ 1896 (2267)
+++||+|||.++.+.+|..++.|++++.. .++|. +|||+|++|++ |||+++|+|++++||++
T Consensus 259 ~r~lls~Lp~~~~~~~p~~~~~d~~~~~~~~l~~ivp~~~~~pyd~r~vI~~-----------l~D~~~f~E~~~~~~~~ 327 (531)
T 3n6r_B 259 VRRLVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHK-----------LADEGDFYEIQEEFAKN 327 (531)
T ss_dssp HHHHHTTSCSSSSSCCCBCCCCSCTTCCCGGGGGTSCSSTTCCCCHHHHHHH-----------HSTTSCCEEESTTSSTT
T ss_pred HHHHHHhccccCCCCCCCCCCCCCcccChHHHHhhCCCCcCCCcCHHHHHHh-----------ccCCcceEEecccCCCc
Confidence 99999999999888888777777766543 46787 89999999997 89999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCC
Q 000092 1897 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 1976 (2267)
Q Consensus 1897 vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~ 1976 (2267)
+|||+|||+|+|||||||++. +.||+|++++++|++|||++|+++++|||+|+||+||+
T Consensus 328 iV~G~arl~G~~Vgvian~~~---------------------~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~lvDtpGf~ 386 (531)
T 3n6r_B 328 IITGFIRLEGRTVGVVANQPL---------------------VLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFL 386 (531)
T ss_dssp EEEEEEEETTEEEEEEEECTT---------------------TGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECSBC
T ss_pred EEEEEEEECCEEEEEEEeccc---------------------ccCCCCCHHHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Confidence 999999999999999999643 24799999999999999999999999999999999999
Q ss_pred CchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccchhhhhcc
Q 000092 1977 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKFR 2055 (2267)
Q Consensus 1977 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~pegav~I~~r 2055 (2267)
+|.++|+.|++++||++++++++++||+|++|+ |+++||+|.+|++ .+++|+ +||||+|+++||+|||+++|+||
T Consensus 387 ~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~--g~~~Ggg~~am~~~~~~~d~--~~awp~A~i~Vm~pegaa~Il~r 462 (531)
T 3n6r_B 387 PGTSQEYGGVIKHGAKLLYAYGEATVPMVTVIT--RKAYGGAYVVMSSKHLRADF--NYAWPTAEVAVMGAKGATEIIHR 462 (531)
T ss_dssp CSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHCC
T ss_pred CCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEc--CCccchhhhhccCccCCCCe--EEEcCCceEecCCHHHHHHHHhc
Confidence 999999999999999999999999999999999 7789999999986 489998 99999999999999999999999
Q ss_pred hhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccC
Q 000092 2056 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135 (2267)
Q Consensus 2056 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~ 2135 (2267)
++. ++ +++ . .+...+|.+.+.+|+.+++.|+||+||+
T Consensus 463 ~~~-------------------~~------~~~---~---------------~~~~~~y~~~~~~p~~aa~~~~vD~vId 499 (531)
T 3n6r_B 463 GDL-------------------GD------PEK---I---------------AQHTADYEERFANPFVASERGFVDEVIQ 499 (531)
T ss_dssp TTT-------------------TS------TTH---H---------------HHHHHHHHHHHSSSHHHHHHTSSSEECC
T ss_pred ccc-------------------cc------hhH---H---------------HHHHHHHHHHhcCHHHHHhcCccCcccC
Confidence 761 00 011 1 1123345555567788999999999999
Q ss_pred ccchHHHHHHHHHH
Q 000092 2136 WDKSRSFFCRRLRR 2149 (2267)
Q Consensus 2136 ~~~~R~~~~~~L~r 2149 (2267)
|++||++|+..|+-
T Consensus 500 P~~TR~~l~~~l~~ 513 (531)
T 3n6r_B 500 PRSTRKRVARAFAS 513 (531)
T ss_dssp GGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 13
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=100.00 E-value=8.2e-75 Score=753.57 Aligned_cols=533 Identities=56% Similarity=0.980 Sum_probs=476.1
Q ss_pred hhcccccCCCCCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEE
Q 000092 5 QRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLV 84 (2267)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v 84 (2267)
.|...+-|.+.+.+.- ... ..+++++|++++||++|++||||+|+|+.|+++++++|++||+|+..+.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~kkILI~g~g~~a~~iira~~~~G~~vi~~d~gi~~v 83 (554)
T 1w96_A 11 ERHTELPGHFIGLNTV----DKL---EESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFV 83 (554)
T ss_dssp HHHHHSCGGGCCSSBG----GGS---CCCHHHHHHHHTTCCBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEE
T ss_pred hhcccCCCCccccccc----ccc---ccccHHHHHhhcCCcccccEEEEECCCHHHHHHHHHHHHcCCcceecccCceEE
Confidence 3555666665443311 001 127999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcC--CeEeCC
Q 000092 85 AMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKG--IIFLGP 162 (2267)
Q Consensus 85 ~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~G--I~fiGP 162 (2267)
+++++.|.++++++.++||+++.+|+..+.++|.|.+.|+++|+++++|+|+||+|+.+|++.++..|++.| +.++||
T Consensus 84 ~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~~y~d~~~l~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp 163 (554)
T 1w96_A 84 AMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGP 163 (554)
T ss_dssp EEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSC
T ss_pred EEecccccccCChhhhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCC
Confidence 999988888999999999999999988778899999999999999999999999999999999999999999 999999
Q ss_pred CHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCC---ccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 163 PATSMAALGDKIGSSLIAQAANVPTLPWSGSH---VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 163 s~eam~~lgDK~~~k~laq~aGVPtpp~~~~~---~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
++++++.++||..++++++++|||+|+|...+ ++.+....+..+|.+.|.+.++++.+++.++++++|||+||||+.
T Consensus 164 ~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~ 243 (554)
T 1w96_A 164 PGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASE 243 (554)
T ss_dssp CHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETT
T ss_pred CHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999999999999999999987520 000111122346777777777899999999999999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCC
Q 000092 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2267)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~ 319 (2267)
|+||+||++|++.+|+.++++.+..+..+.+++||+|+++++|++|++++|++|+++++++++|++|++|+|.++.+|++
T Consensus 244 g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k~~~~~P~~ 323 (554)
T 1w96_A 244 GGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVT 323 (554)
T ss_dssp CCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCC
T ss_pred CCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccceeeeCCCc
Confidence 99999999999999999999999888777899999999988999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 320 ~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
.++++..++|.+.+.++++++||+|++++||++++.+|++||||+|||+|++|+++++++|+|++++++++++|.+++.+
T Consensus 324 ~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~~~~~~G~dl~~~~~~~a~G~~l~~~ 403 (554)
T 1w96_A 324 IAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRI 403 (554)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceehhhhhcCCCHHHHHHHHHcCCCcccc
Confidence 88999999999999999999999999999999974478899999999999999999999999999999999999999888
Q ss_pred hhhhhcccccCCCcccccccccccccCCCc------cccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcE
Q 000092 400 PEIRRFYGMEHGGVYDAWRKTSVIATPFDF------DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473 (2267)
Q Consensus 400 pdir~~yg~~~~~~~~~~~~~~~~~i~f~~------~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V 473 (2267)
|+++.+||.+|.+ ...++|.+ ..+..+.+.||++++|+++|+|.++|.|++|+|..+.++..++|
T Consensus 404 ~~~~~~~g~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~~~~~~~~~~v 474 (554)
T 1w96_A 404 SDIRTLYGMNPHS---------ASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNV 474 (554)
T ss_dssp HHHHHHTTCCTTC---------CCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSE
T ss_pred cchhhhccCCccc---------cccccccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEeEEecCCCCCE
Confidence 8899999988865 56666630 01224567899999999999999999999999999988888899
Q ss_pred EEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 474 ~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
|+++++.+|+.|++++||++|+|+++|+|+++|+++|.++|++++|+|.++||++||++||++|+|++|+++|+|||++|
T Consensus 475 ~~~~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~g~~~~~i~~~~~~~~~~~f~~~~~~t~~~~~~~ 554 (554)
T 1w96_A 475 WGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 554 (554)
T ss_dssp EEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTCC----CCHHHHHHHTSHHHHTTCCCTTHHHHHC
T ss_pred EEeeecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEEeeccCCHHHHHHHhcCHhhhcCCccchHhhhhC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999864
No 14
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=100.00 E-value=3.9e-76 Score=753.63 Aligned_cols=439 Identities=18% Similarity=0.241 Sum_probs=378.9
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|++++ +||+|+|++||+||++||+|+.+++|+.|++++|.++|+|+|+|.|||||||| |++.+++.
T Consensus 92 ~dgvVtG~G~I------~Gr~v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGArlq--e~~~~l~~ 163 (587)
T 1pix_A 92 SVAIVKGLGRV------NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFD--EQEKVYPN 163 (587)
T ss_dssp CCSEEEEEEEE------TTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGG--GHHHHSSS
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc--ccchhccc
Confidence 47899999987 99999999999999999999999999999999999999999999999999999 66665531
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
..||+.+|... .+.||+ .||+
T Consensus 164 ---------~~~~g~i~~~~----------------------------------------~~ls~~----------giP~ 184 (587)
T 1pix_A 164 ---------RRGGGTPFFRN----------------------------------------AELNQL----------GIPV 184 (587)
T ss_dssp ---------TTSTTHHHHHH----------------------------------------HHHHHT----------TCCE
T ss_pred ---------cccHHHHHHHH----------------------------------------HHHhCC----------CCCE
Confidence 12444444221 111221 2699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHH-----------------hhccccccccccCCcccccc-c
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNK-----------------LLGREVYSSHMQLGGPKIMA-T 1806 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~-----------------~lG~evy~s~~~lGG~~i~~-~ 1806 (2267)
|++|+|+|+|||||+ +++|++||+++ +.|+|+||+++++ ++|+++ ++++|||+++|. +
T Consensus 185 Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~~~~d~~~A~el~~~tge~v--~~e~lgga~~h~~~ 261 (587)
T 1pix_A 185 IVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTG--KTEPPGAVDIHYTE 261 (587)
T ss_dssp EEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTTC--CCCCSSBHHHHTTT
T ss_pred EEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccccccchhHHHHHHHHhCCcc--ChhhcccHHHHHhh
Confidence 999999999999999 99999999886 8999999999999 999999 899999999998 6
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccCCC---CCCChHHHhcccccCCCCcccc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGG 1879 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~R~~i~~~~~~~~~~~~g 1879 (2267)
||++|++++||.++++.+++||+|+|+++.+.+|..++ |+++++ ..++|. +|||+|++|++
T Consensus 262 ~GvvD~vv~~e~~a~~~~r~~ls~lp~~~~~~~~~~~~-~~p~~~~~~l~~ivp~~~~~pyd~r~vI~~----------- 329 (587)
T 1pix_A 262 TGFMREVYASEEGVLEGIKKYVGMLPKYDPEFFRVDDP-KAPAFPADDLYSMVPLNDKRAYDIYNVIAR----------- 329 (587)
T ss_dssp SCCSCEEESSHHHHHHHHHHHHHTSCCCCGGGGBSSCC-CCCSSCGGGHHHHSCSSTTSCCCHHHHHHT-----------
T ss_pred cCceeEecCCHHHHHHHHHHHHHhCCccCCCCCCCCCC-CCCCCChHHHhhhCCCCCCCCccHHHHHHH-----------
Confidence 99999999999999999999999999988777776554 555543 456777 99999999997
Q ss_pred cccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHh
Q 000092 1880 IFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDF 1959 (2267)
Q Consensus 1880 l~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a 1959 (2267)
|||+++|+|++++|++++|||+|||+|+|||||||+++.. |+||. +.++...+.+|+|+|++++|++|||++|
T Consensus 330 l~D~~~f~E~~~~~~~~iV~G~arl~G~~VgvIan~~g~~----~~~P~---~~~~~~~~~~G~l~~~~a~Kaarfi~~c 402 (587)
T 1pix_A 330 LFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVANVQGLL----MNYPE---YKAAGSVGIGGKLYRQGLVKMNEFVTLC 402 (587)
T ss_dssp TSGGGBCEESSTTSSTTEEEEEEEETTEEEEEEEECCSEE----TTCCT---TSCTTCCEETTEECHHHHHHHHHHHHHH
T ss_pred hCCCceEEEeccccCCcEEEEEEEECCEEEEEEEeccCcc----ccccc---cccccccccCCCcCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999987633 56665 3334466778999999999999999999
Q ss_pred cccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCC--ccceeecc
Q 000092 1960 NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINS--DHIEMYAD 2036 (2267)
Q Consensus 1960 ~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~--d~~~~~A~ 2036 (2267)
+++++|||+|+||+||++|.++|+.|++++||++++++++++||+|++|+ |+++||+|+++++ ++++ |+ +|||
T Consensus 403 ~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~--g~~~Ggg~~am~~~~~~~~~d~--~~a~ 478 (587)
T 1pix_A 403 ARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITL--RKGTAAAHYVLGGPQGNDTNAF--SIGT 478 (587)
T ss_dssp HHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEEC--SEEETTHHHHTTCTTCTTTEEE--EEEC
T ss_pred hcCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCCccHHHHHhcCcccCcccce--eeec
Confidence 99999999999999999999999999999999999999999999999999 7889999999985 5999 98 9999
Q ss_pred cccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHh
Q 000092 2037 RTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAE 2116 (2267)
Q Consensus 2037 p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fad 2116 (2267)
|+|+++||+|||+++|+||++. +.++| .+ .+++++++++ ++++.+|.+
T Consensus 479 p~A~~~Vm~pegaa~Il~r~~~--~~~~~--------------~g--~~~~~~~~~~--------------~~~~~~y~~ 526 (587)
T 1pix_A 479 AATEIAVMNGETAATAMYSRRL--AKDRK--------------AG--KDLQPTIDKM--------------NNLIQAFYT 526 (587)
T ss_dssp TTCEEESSCHHHHHHHHHHHHH--HHHHH--------------TT--CCCHHHHHHH--------------HHHHHHHHH
T ss_pred cCCeEecCCHHHHHHHHHhhhh--hhhhh--------------cC--CChHHHHHHH--------------HHHHHHHHH
Confidence 9999999999999999999872 22221 11 2333333333 345678888
Q ss_pred hhCcHHHHHHcCCcccccCccchHHHHHHHHHHH
Q 000092 2117 LHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2117 lhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
|++|.+++++|+||+||+|++||++|+++|+..
T Consensus 527 -~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~ 559 (587)
T 1pix_A 527 -KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAA 559 (587)
T ss_dssp -TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHH
T ss_pred -hCCHHHHHhcCCCccccCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999754
No 15
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=100.00 E-value=3.8e-76 Score=750.11 Aligned_cols=443 Identities=19% Similarity=0.237 Sum_probs=366.3
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhh-hc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKA-CF 1664 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~-l~ 1664 (2267)
..|||+|++++ +||+|+|++||+||++||+|+.+++|+.|++++|.++|+|+|+|.|||||||+++|++++ +
T Consensus 93 ~dgVVtG~G~I------~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~lPvI~l~dSgGArl~~qe~~~~~l- 165 (588)
T 3gf3_A 93 TTNIVNGLGRV------DGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNR- 165 (588)
T ss_dssp SCSEEEEEEEE------TTEEEEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSST-
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcCcccccccccch-
Confidence 35899999987 999999999999999999999999999999999999999999999999999988898875 5
Q ss_pred cccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCce
Q 000092 1665 EIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1665 ~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ip 1744 (2267)
.|++.+|... .. .|+. .||
T Consensus 166 -----------~~~g~if~~~---~~-------------------------------------ls~~----------~iP 184 (588)
T 3gf3_A 166 -----------RGGGTPFFRN---SE-------------------------------------LNQL----------GIP 184 (588)
T ss_dssp -----------TSTTHHHHHH---HH-------------------------------------HHHT----------TCC
T ss_pred -----------hhHHHHHHHH---HH-------------------------------------HhcC----------CCC
Confidence 3344444221 11 1111 279
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHH-----------------HhhccccccccccCCcccccc-c
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALN-----------------KLLGREVYSSHMQLGGPKIMA-T 1806 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~-----------------~~lG~evy~s~~~lGG~~i~~-~ 1806 (2267)
+|++|+|+|+|||||.+.++|++|+.+++.|+|+||++|+ +.++.++|.|+++|||+++|. +
T Consensus 185 ~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g~~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~ 264 (588)
T 3gf3_A 185 VIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDE 264 (588)
T ss_dssp EEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCTTBHHHHTTT
T ss_pred EEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccccccccchhhhhhhhccccccChhhccchhhhccc
Confidence 9999999999999999888888888899999999999996 445444444899999999998 7
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCC---CCCCCccCCC---CCCChHHHhcccccCCCCccccc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDP---PDRPVEYLPE---NSCDPRAAICGFLDNNGKWIGGI 1880 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~---~~r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl 1880 (2267)
||++|++++||+++++.+|+||||||+++.+.+|..++.+| .++...++|. +|||+|++|++ |
T Consensus 265 sGv~d~~a~de~~al~~~r~~ls~Lp~~~~~~~~~~~~~~p~~~~~~L~~ivP~~~~~pyD~r~vI~~-----------i 333 (588)
T 3gf3_A 265 TGFFREVYQNDLGVIDGIKKYISYLPAYNLEFFRVDTPKAPQLPAEDLYSIIPMNQKRPYDIYEVIAR-----------L 333 (588)
T ss_dssp SCCSCEEESSHHHHHHHHHHHHHTSCCCCGGGGCSSCCCCCSSCGGGHHHHSCSSTTCCCCHHHHHHH-----------H
T ss_pred cccceEEeCCHHHHHHHHHHHHHhCCccCCCcCCCCCCCCCcCChHHHHhhCCCCCCCCCCHHHHHHH-----------H
Confidence 99999999999999999999999999988776665544333 2233456887 89999999997 8
Q ss_pred ccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhc
Q 000092 1881 FDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFN 1960 (2267)
Q Consensus 1881 ~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~ 1960 (2267)
||+++|+|++++||+++|||+|||+|+|||||||+++.. . .+|.+.++ ..+.||+|+|++++|++|||++|+
T Consensus 334 ~D~~~f~E~~~~~g~~iV~G~arl~G~pVgvvan~~~~~----~---~~p~~~~~-~~~~~G~l~~~~a~Kaarfi~lcd 405 (588)
T 3gf3_A 334 FDNSEFSEYKKGYGPEMVTGLAKVNGLLVGVIANVQGLL----M---NYPEYKQN-SVGIGGKLYRQGLIKMNEFVTLCA 405 (588)
T ss_dssp SGGGBCEESSTTSSTTEEEEEEEETTEEEEEEEECCSEE----E---TCCTTSSS-CEEETTEECHHHHHHHHHHHHHHH
T ss_pred cCCCcceeecccccccEEEEEEEECCEEEEEEEecCCcc----c---ccccchhh-hhccCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999986643 1 23444443 667899999999999999999999
Q ss_pred ccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeeccccc
Q 000092 1961 REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTA 2039 (2267)
Q Consensus 1961 ~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A 2039 (2267)
+||+|||+|+||+||++|.++|+.|++++||++++++++++||+|++|+ |+.+||+|++|++. ++++++.+||||+|
T Consensus 406 ~f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~--g~~~Ggg~~am~~~~~~~~~~~~~awp~A 483 (588)
T 3gf3_A 406 RDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITI--RKASAAAHYVLGGPQGNNTNVFSIGTGAC 483 (588)
T ss_dssp HTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEES--SEEETTHHHHTTCTTCTTTEEEEEECTTC
T ss_pred hcCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCccHHHHHHhcccccCCccceEEECCCc
Confidence 9999999999999999999999999999999999999999999999999 67799999999864 88886669999999
Q ss_pred EEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhC
Q 000092 2040 KGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHD 2119 (2267)
Q Consensus 2040 ~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhd 2119 (2267)
++|||+|||+|+|+||++.. . .++.++..++ +++. +.++..+|.+..
T Consensus 484 ~~sVm~pEgaa~Il~~~~~~--~--------------~~~~~~~~~~--~~~~--------------~~~~~~~y~~~~- 530 (588)
T 3gf3_A 484 EYYVMPGETAANAMYSRKLV--K--------------AKKAGEDLQP--IIGK--------------MNDMIQMYTDKS- 530 (588)
T ss_dssp EEESSCHHHHHHHHHHHHHH--H--------------C-------CH--HHHH--------------HHHHHHHHHHTT-
T ss_pred eEEeCCHHHHHHHHhhhHHh--h--------------hhccccccch--HHHH--------------HHHHHHHHHHhC-
Confidence 99999999999999997621 0 0011001111 1111 133455666644
Q ss_pred cHHHHHHcCCcccccCccchHHHHHHHHHHH
Q 000092 2120 TSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2120 t~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
+|.++++.|+||+||+|++||++|+..|..-
T Consensus 531 ~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~ 561 (588)
T 3gf3_A 531 RPKYCTEKGMVDEIVDMTEVRPYIQAFTEAA 561 (588)
T ss_dssp SHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCCeeeCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999877664
No 16
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=100.00 E-value=3.1e-75 Score=737.69 Aligned_cols=424 Identities=23% Similarity=0.306 Sum_probs=364.6
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|.|||||||++++++++++
T Consensus 108 ~dgVVtG~G~I------~Gr~v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSgGARl~~q~~~~~~~- 180 (555)
T 3u9r_B 108 AAGIVAGIGRV------EGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDR- 180 (555)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGGGGTSSST-
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcceeeccc-
Confidence 36899999987 99999999999999999999999999999999999999999999999999999889887753
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
.+|+.+|.. +.+ .||. .|||
T Consensus 181 ----------~~~~~i~~~---~~~-------------------------------------ls~~----------giP~ 200 (555)
T 3u9r_B 181 ----------EHFGRIFFN---QAN-------------------------------------MSAR----------GIPQ 200 (555)
T ss_dssp ----------TSTTHHHHH---HHH-------------------------------------HHHT----------TCCE
T ss_pred ----------ccHHHHHHH---HHH-------------------------------------HhcC----------CCCE
Confidence 234445432 111 1111 2699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++|+|+|+|||||+++++|++||+++ +.|+|+||++++.++|+++ +.++|||+++|. +||++|++++||.+++..
T Consensus 201 Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~aGP~vik~~~ge~~--~~e~LGGa~~h~~~sGv~d~v~~de~~a~~~ 278 (555)
T 3u9r_B 201 IAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATGEVV--SAEELGGADVHCKVSGVADHYAEDDDHALAI 278 (555)
T ss_dssp EEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTTCSCSEEESSHHHHHHH
T ss_pred EEEEecCCCccHHHHHHhCCceEEecCCceEEEccHHHHHHHhcCcc--ChhhccchhhhhhccCceeEEeCCHHHHHHH
Confidence 999999999999999999999999875 7899999999999999998 889999999997 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCC---CCCCCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceE
Q 000092 1824 ILKWLSYVPPHIGGALPIISPLDP---PDRPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTV 1897 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~d~---~~r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~v 1897 (2267)
+++||+|||.++.+++|..++.+| +++...++|. +|||+|++|++ ++|+++|+|+++.||+++
T Consensus 279 ~r~~ls~Lp~~~~~~~~~~~~~~p~~~~~~l~~ivP~~~~~pyd~r~~i~~-----------i~D~~~f~E~~~~~g~~i 347 (555)
T 3u9r_B 279 ARRCVANLNWRKQGQLQCRAPRAPLYPAEELYGVIPADSKQPYDVREVIAR-----------LVDGSEFDEFKALFGTTL 347 (555)
T ss_dssp HHHHHHTSCCCCCCCCCCCCCCCCSSCGGGHHHHSCSSTTSCCCTHHHHTT-----------TSGGGBCEEESTTSSTTE
T ss_pred HHHHHHhCCccCCCCCCCCCCCCCCCChHHHHhhCCCCccCCccHHHHHhh-----------hcCCceeEEeeccCCCcE
Confidence 999999999988777666544333 3444567887 89999999997 799999999999999999
Q ss_pred EEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCC
Q 000092 1898 VTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSG 1977 (2267)
Q Consensus 1898 VtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~ 1977 (2267)
|||+|||+|+||||||| .|+|++++++|++|||++|++|++|||+|+||+||++
T Consensus 348 V~G~ari~G~~Vgvian--------------------------~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~ 401 (555)
T 3u9r_B 348 VCGFAHLHGYPIAILAN--------------------------NGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMV 401 (555)
T ss_dssp EEEEEEETTEEEEEEEE--------------------------CSSBCHHHHHHHHHHHHHHHHHTCCEEEEEEECCBCC
T ss_pred EEEEEEECCEEEEEEEe--------------------------CCccCHHHHHHHHHHHHHHhcCCCCEEEEecCcCCCC
Confidence 99999999999999999 3899999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchh
Q 000092 1978 GQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 1978 G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
|.++|+.|++++||+++.++++++||+|++|++ +.++||+|++.++.+++|+ +||||+|++|||+|||+++|+|..+
T Consensus 402 G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g-~~~Ggg~~am~~~~~~~d~--~~a~p~A~i~Vmgpegaa~il~~~~ 478 (555)
T 3u9r_B 402 GQKYEAGGIAKHGAKLVTAVACARVPKFTVLIG-GSFGAGNYGMCGRAYDPRF--LWMWPNARIGVMGGEQAAGVLAQVK 478 (555)
T ss_dssp SHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEE-EEETTHHHHTTCGGGCCSE--EEECTTCEEESSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeC-CccchhhHhhcCccCCCCe--EEEcCCcEEEcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999993 3344455555556799999 9999999999999999999998532
Q ss_pred hhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH-HHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2058 ELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAR-EKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2058 ~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r-~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
. +++++.+++.++++.+++++++.++ +++. +|..+++.|+||+||+|
T Consensus 479 ~----------------~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~----------------~p~~aa~r~~vD~vIdP 526 (555)
T 3u9r_B 479 R----------------EQAERAGQQLGVEEEAKIKAPILEQYEHQG----------------HPYYSSARLWDDGVIDP 526 (555)
T ss_dssp H----------------HHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----------------SHHHHHHTTSSSCBCCG
T ss_pred H----------------HHHHhccCCCCcchHHHHHHHHHHHHHHhC----------------CHHHHhhccccCcccCh
Confidence 0 1233334455666666676666554 3333 46677899999999999
Q ss_pred cchHHHHHHHHHHH
Q 000092 2137 DKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2137 ~~~R~~~~~~L~r~ 2150 (2267)
++||.+|+..|+..
T Consensus 527 ~~TR~~l~~~l~~~ 540 (555)
T 3u9r_B 527 AQTREVLALALSAA 540 (555)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888643
No 17
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=100.00 E-value=8e-75 Score=737.18 Aligned_cols=417 Identities=27% Similarity=0.403 Sum_probs=373.8
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||++.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+++|
T Consensus 78 ~dgvvtG~G~i------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~SGGaRmq--eg~~sl~~ 149 (522)
T 1x0u_A 78 GDGVVTGWGKV------DGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQ--EGALSLEG 149 (522)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChh--HHHHHHHH
Confidence 46799999876 99999999999999999999999999999999999999999999999999999 88999876
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
|+ .+| ..+.+.||. ||+
T Consensus 150 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 166 (522)
T 1x0u_A 150 YG------------AVF----------------------------------------KMNVMASGV-----------IPQ 166 (522)
T ss_dssp HH------------HHH----------------------------------------HHHHHHTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHhCCC-----------CcE
Confidence 65 111 111222333 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-C-cceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-Q-PIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGIS 1822 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a-~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~ 1822 (2267)
|+++||||+||+||+++|||++||+++ + .|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++
T Consensus 167 Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~aGP~vI~~~~ge~~--~~e~lggae~~~~~~G~~d~vv~~~~~~~~ 244 (522)
T 1x0u_A 167 ITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEITKVVLGEEV--SFQDLGGAVVHATKSGVVHFMVDSEQEAIN 244 (522)
T ss_dssp EEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESSCHHHHHHTTCCCC--CHHHHHBHHHHHHTTCCCSEEESCHHHHHH
T ss_pred EEEEcCCCchHHHHHHhcCCeEEEecCCccEEEecCHHHHHHHhCCcC--ChhhcchHHHHhhcCceeEEEeCCHHHHHH
Confidence 999999999999999999999999999 8 999999999999999999 778999999998 79999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccc
Q 000092 1823 AILKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWAR 1895 (2267)
Q Consensus 1823 ~i~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~ 1895 (2267)
.+++||+|+|+++.+.+|..++.|++++.. .++|. .+||+|++|+. |||+|||+|+...|++
T Consensus 245 ~~~~ll~~lp~~~~~~~~~~~~~d~p~~~~~~l~~v~p~~~~~~~~~r~~I~~-----------l~D~gsF~E~~~~~~~ 313 (522)
T 1x0u_A 245 LTKRLLSYLPSNNMEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREIIYK-----------IVDNGEFLEVHKHWAQ 313 (522)
T ss_dssp HHHHHHHHSCSSTTSCCCCCCCCCCSCCCSSSHHHHSCSSSSCCCCHHHHHHH-----------HSGGGCCEEETTTSCT
T ss_pred HHHHHHHhccccCccCCCCCCCCCCcccCchhHhhhccCCCCCCCCHHHHHHH-----------hCCCCceEEecCCCcc
Confidence 999999999998888788777777776643 45676 89999999997 8999999999999999
Q ss_pred eEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCC
Q 000092 1896 TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF 1975 (2267)
Q Consensus 1896 ~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf 1975 (2267)
++|||+|||+|+||||+|+|+++. ||+|++++++|++|||++|+++++|||+|+||+||
T Consensus 314 ~vVtG~ari~G~~V~via~d~~~~---------------------gG~l~~~~~~K~ar~i~~a~~~~~Plv~l~ds~G~ 372 (522)
T 1x0u_A 314 NIIVGFARIAGNVVGIVANNPEEF---------------------GGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGY 372 (522)
T ss_dssp TEEEEEEEETTEEEEEEEECTTTG---------------------GGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCB
T ss_pred cEEEEEEEECCEEEEEEEECCCcc---------------------CCCcCHHHHHHHHHHHHHHhhCCCCEEEEecCCCC
Confidence 999999999999999999987654 89999999999999999999999999999999999
Q ss_pred CCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccchhhhhc
Q 000092 1976 SGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKF 2054 (2267)
Q Consensus 1976 ~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~pegav~I~~ 2054 (2267)
++|.++|+.|+++++|+++++++++++|+|++|+ |+++||+|.++++ ++++|+ +||||+|+++||+|||+++|+|
T Consensus 373 ~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~--g~~~GGg~~~~a~~a~~~D~--v~a~p~A~i~v~gpegaa~Il~ 448 (522)
T 1x0u_A 373 VPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIV--RKSYGGAHIAMSIKSLGADL--VYAWPTAEIAVTGPEGAVRILY 448 (522)
T ss_dssp CCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTCCGGGTCSE--EEECTTCEEESSCHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--CCcccHHHHHhcccccCCCE--EEEeCCCEEEecCHHHHHHHHh
Confidence 9999999999999999999999999999999999 8889999999987 589999 9999999999999999999999
Q ss_pred chhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCccccc
Q 000092 2055 RTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVV 2134 (2267)
Q Consensus 2055 r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii 2134 (2267)
|++. +... | + +++ .+++..+|.+.|++|.+++++|+||+||
T Consensus 449 r~~i--~~~~--d------------------~---~~~--------------~~~l~~~y~~~~~~~~~~~~~G~iD~II 489 (522)
T 1x0u_A 449 RKEI--QQAS--N------------------P---DDV--------------LKQRIAEYRKLFANPYWAAEKGLVDDVI 489 (522)
T ss_dssp SSSS--SSSS--S------------------S---SSS--------------SHHHHHHHHHHHSSSHHHHHTTSSSEEC
T ss_pred hhhh--hccc--C------------------H---HHH--------------HHHHHHHHHHhcCCHHHHHhcCCCcEeE
Confidence 9851 0000 0 0 001 1345678999999999999999999999
Q ss_pred CccchHHHHHHHHHHH
Q 000092 2135 DWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2135 ~~~~~R~~~~~~L~r~ 2150 (2267)
+|+++|++|++.|+..
T Consensus 490 ~p~~tR~~L~~~L~~~ 505 (522)
T 1x0u_A 490 EPKDTRRVIVAGLEML 505 (522)
T ss_dssp CGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999754
No 18
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=100.00 E-value=5.9e-71 Score=699.86 Aligned_cols=438 Identities=32% Similarity=0.549 Sum_probs=411.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.||+||||+|+|++|++++++++++|++++ +++++.++++++.++||+++++++.+..++|.|.+.|++
T Consensus 4 m~~~kiLI~g~g~~a~~i~~aa~~~G~~~v-----------~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~ 72 (446)
T 3ouz_A 4 MEIKSILIANRGEIALRALRTIKEMGKKAI-----------CVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIA 72 (446)
T ss_dssp TCCCEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHH
T ss_pred cccceEEEECCCHHHHHHHHHHHHcCCEEE-----------EEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHH
Confidence 368999999999999999999999999885 344466789999999999999988788889999999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|+++++|+|+||||+.+|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||..
T Consensus 73 ~~~~~~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~------------- 139 (446)
T 3ouz_A 73 AAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSD------------- 139 (446)
T ss_dssp HHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCS-------------
T ss_pred HHHHhCcCEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSR 281 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~r 281 (2267)
..+.+.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+..+.. ..+++||+|++|++
T Consensus 140 --------~~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~ 211 (446)
T 3ouz_A 140 --------GALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPR 211 (446)
T ss_dssp --------SSCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCE
T ss_pred --------cCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 016899999999999999999999999999999999999999999998876532 56899999999989
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|++|++++|++|++++++.++|+++++|+|.++.+|++.++++..++|.+.+.++++++||+|++++||++++ +|++||
T Consensus 212 e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~~ 290 (446)
T 3ouz_A 212 HIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDK-NLDFYF 290 (446)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEE
T ss_pred EEEEEEEEcCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeC-CCCEEE
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999984 578999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
||||||++++|+++++++|+|++++++++++|.|++. +..+.+.||+
T Consensus 291 iEiNpR~~g~~~~~~~~~G~dl~~~~~~~~~G~~l~~---------------------------------~~~~~~~g~a 337 (446)
T 3ouz_A 291 IEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPS---------------------------------QESIKLNGHS 337 (446)
T ss_dssp EEEESSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCC---------------------------------GGGCCCCSEE
T ss_pred EEeECCCCCcceeeeeeeCCCHHHHHHHHHCCCCCCc---------------------------------CCCCCcceEE
Confidence 9999999999999999999999999999999998851 1223457999
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+++||++|+| ..|.|++|+|..+.+|+.++|+++..+.+|..|+++|||++|+||++|+||++|+++|.+||+++.|+|
T Consensus 338 i~~ri~ae~~-~~~~p~~G~i~~~~~p~~~~vr~~~~~~~G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g 416 (446)
T 3ouz_A 338 IECRITAEDS-KTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISG 416 (446)
T ss_dssp EEEEEESBCT-TTCCBCCEECSEEECCCSTTEEEEECCCTTCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCEEES
T ss_pred EEEEeeccCC-CccCCCCcEEeEEecCCCCCEEEEcccccCCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCEEeC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCCcccccccccchhhhh
Q 000092 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2267)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2267)
++||++||+++|++|+|++|+++|+|||+
T Consensus 417 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
T 3ouz_A 417 -IKTTKDFHLSMMENPDFINNNYDTNYLAR 445 (446)
T ss_dssp -SCCTHHHHHHHHTCHHHHTTCCCTTHHHH
T ss_pred -ccCCHHHHHHHhCChhhccCCcccccccc
Confidence 99999999999999999999999999996
No 19
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=100.00 E-value=8.8e-68 Score=727.94 Aligned_cols=441 Identities=32% Similarity=0.541 Sum_probs=353.4
Q ss_pred CCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHH
Q 000092 44 GKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 44 g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~I 123 (2267)
+++||+||||+|+|++|++++++||++|++++ +++++.+.++++.++||+++++++....++|.|.+.|
T Consensus 27 ~~~m~kkILI~grGeia~~iiraar~lGi~vV-----------aV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~I 95 (1236)
T 3va7_A 27 KKKPFETVLIANRGEIAVRIMKTLKRMGIKSV-----------AVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKI 95 (1236)
T ss_dssp -CCSCSEEEECCCHHHHHHHHHHHHHHTCEEE-----------EEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHH
T ss_pred ccCCCCEEEEEcCCHHHHHHHHHHHHCCCEEE-----------EEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHH
Confidence 46899999999999999999999999998875 4455777899999999999999887888899999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++|+++++|+|+||||+++||..+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 96 l~~a~~~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~----------- 164 (1236)
T 3va7_A 96 INAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSG----------- 164 (1236)
T ss_dssp HHHHHHTTCSEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC--------------
T ss_pred HHHHHHhCCCEEEECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeE-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccc
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQ 279 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g 279 (2267)
.+.+.+++.++++++||||||||+.|+||+||++|+|.+|+.++++.+..+. .+.+++||+|++|
T Consensus 165 -----------~v~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G 233 (1236)
T 3va7_A 165 -----------LIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN 233 (1236)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -----------ecCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC
Confidence 1678889999999999999999999999999999999999999999877543 3468999999999
Q ss_pred cceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~ 359 (2267)
++|++|++++|++|++++++.|||++|++|+|+++++|++.+++++.++|.+.+.++++++||+|+++|||+++++++++
T Consensus 234 ~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~ 313 (1236)
T 3va7_A 234 ARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEF 313 (1236)
T ss_dssp CEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEE
T ss_pred CeEEEEEEEecCCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcE
Confidence 89999999999999999999999999999999999999988999999999999999999999999999999999655899
Q ss_pred EEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000092 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2267)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~G 439 (2267)
||||||||+|++|+++|+++|+|++++++++++|.+++. .+..+.++|
T Consensus 314 y~iEINpRl~g~~~~te~vtGvDlv~~~l~~a~G~~l~~--------------------------------~~~~~~~~g 361 (1236)
T 3va7_A 314 YFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSPDF--------------------------------DNTKIEVSG 361 (1236)
T ss_dssp EEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCG--------------------------------GGCCCCCCS
T ss_pred EEEEEECCCCCccHHHHHHHCCCHHHHHHHHHCCCCCCC--------------------------------ccccccccc
Confidence 999999999999999999999999999999999998752 112344679
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000092 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2267)
Q Consensus 440 hai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2267)
|++++|+|+|||.++|.|++|++..+.++.+ ++++..+.+|+.|+++|||++|+||++|+||++|+++|.+||+++.|
T Consensus 362 ~Ai~~riyaedp~~~f~p~~G~i~~~~~p~g--vrvd~~v~~G~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~i 439 (1236)
T 3va7_A 362 ASIEARLYAENPVKDFRPSPGQLTSVSFPSW--ARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAV 439 (1236)
T ss_dssp EEEEEEEESEETTTTTEECCEECCEEECCTT--SEEEECCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE
T ss_pred eEEEEEEecCCcccccCCCCceEEEEEcCCc--cEecccccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEEE
Confidence 9999999999999999999999999988864 88888899999999999999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
+| ++||++||+++|++|+|++|+++|+|||++
T Consensus 440 ~G-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 471 (1236)
T 3va7_A 440 YG-CITNIDYLRSIASSKMFKEAKVATKVLDSF 471 (1236)
T ss_dssp ES-SCCSHHHHHHHHHCHHHHHTCCCTTGGGGC
T ss_pred eC-cccCHHHHHHHhCCHHHhCCCCcchhhhhc
Confidence 99 999999999999999999999999999986
No 20
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=100.00 E-value=1.1e-65 Score=708.31 Aligned_cols=451 Identities=33% Similarity=0.552 Sum_probs=352.4
Q ss_pred hcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-------CC
Q 000092 41 SLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-------TN 113 (2267)
Q Consensus 41 ~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-------~~ 113 (2267)
++|| ||+||||||||++|++++|+|+++|++++ +++++.+..+.+.++||+++.+|.. ..
T Consensus 9 ~~~~--~~~~~lianrGeia~riiraa~elGi~vv-----------av~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~ 75 (1165)
T 2qf7_A 9 HHGG--PISKILVANRSEIAIRVFRAANELGIKTV-----------AIWAEEDKLALHRFKADESYQVGRGPHLARDLGP 75 (1165)
T ss_dssp ---C--CCCEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCT
T ss_pred ccCC--cceEEEEcCCcHHHHHHHHHHHHcCCEEE-----------EEECCCcccchhHHhCCEEEEcCCcccccccCCc
Confidence 3444 68999999999999999999999998885 4444666778999999999999874 45
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCC
Q 000092 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2267)
Q Consensus 114 ~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~ 193 (2267)
..+|+|++.|+++|+++++|+|+||||+++|++.+++.|++.|++|+||++++++.++||..++++++++|||+|||..
T Consensus 76 ~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~- 154 (1165)
T 2qf7_A 76 IESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATE- 154 (1165)
T ss_dssp THHHHCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC-----
T ss_pred cccccCHHHHHHHHHHhCCCEEEECCCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeC-
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CC
Q 000092 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GS 269 (2267)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~ 269 (2267)
..+++.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+..++. +.
T Consensus 155 --------------------~~v~s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~ 214 (1165)
T 2qf7_A 155 --------------------PLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKD 214 (1165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------cCCCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCC
Confidence 015678888889999999999999999999999999999999999998876532 46
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEE
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVE 349 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVE 349 (2267)
+++||+|+++++|++|++++|++|+++++++|+|++||+|++.++.+|++.++++..++|.+.+.++++++||+|++++|
T Consensus 215 ~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vE 294 (1165)
T 2qf7_A 215 EVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVE 294 (1165)
T ss_dssp -----CCCSSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEeccCCcEEEEEEEEcCCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEE
Confidence 89999999988999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCc
Q 000092 350 YLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429 (2267)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~ 429 (2267)
|++++++|++||||+|||+|++|+++++++|+|++++++++++|.+++.++ +.+.
T Consensus 295 f~vd~~dg~~~~iEiNpR~~~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~------------------------~g~p- 349 (1165)
T 2qf7_A 295 YLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQ------------------------SGVP- 349 (1165)
T ss_dssp EEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSGG------------------------GTCC-
T ss_pred EEEECCCCCEEEEEEEcCCCCCchhhhhhhCCCHHHHHHHHHcCCCccccc------------------------cccc-
Confidence 999854788999999999999999999999999999999999999886310 0000
Q ss_pred cccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEee-eeCCcccccCCcccEEEEEEeCCHHHHHH
Q 000092 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV-KSGGGIHEFSDSQFGHVFAFGESRALAIA 508 (2267)
Q Consensus 430 ~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v-~~G~~i~~~~Ds~~g~via~G~~reeA~~ 508 (2267)
.+.....+||+++|||++|+|..+|.|++|+|..+..+..++++++.++ .+|..|+++|||++|+|+++|+|+++|++
T Consensus 350 -~q~~~~~~g~Ai~~ri~ae~P~~~f~p~~G~I~~~~~~~~~gvrvd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~ 428 (1165)
T 2qf7_A 350 -NQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAIS 428 (1165)
T ss_dssp -CGGGCCCCSEEEEEEEESEETTTTTEECCEECCEEECCCCTTEEEECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHH
T ss_pred -cccccccCcEEEEEEEEecCCccCcCCCCcEEEEEecCCCCceEeeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHH
Confidence 1223346799999999999999999999999998888877899988765 57999999999999999999999999999
Q ss_pred HHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 509 NMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 509 ~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
+|.++|++++|+| ++||++||+++|++|+|++|+++|+|||++
T Consensus 429 ~~~~al~~i~i~G-~~tni~~~~~~~~~~~f~~~~~~t~~~~~~ 471 (1165)
T 2qf7_A 429 RMDRALREFRIRG-VATNLTFLEAIIGHPKFRDNSYTTRFIDTT 471 (1165)
T ss_dssp HHHHHHHHCEEES-SCCSHHHHHHHHTSHHHHTTCCCTTTTTTC
T ss_pred HHHHHhhcEEEec-ccCCHHHHHHHhcCHHhhcCCccchhhhcC
Confidence 9999999999999 999999999999999999999999999986
No 21
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=100.00 E-value=3.4e-62 Score=620.16 Aligned_cols=443 Identities=33% Similarity=0.523 Sum_probs=403.4
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
||||||+|+|+.+++++++++++|++++ ++..+.+.++++.++||+++.+|+.....+|.|.+.|+++|
T Consensus 1 ~k~ilI~g~g~~~~~i~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~ 69 (451)
T 2vpq_A 1 MKKVLIANRGEIAVRIIRACRDLGIQTV-----------AIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIA 69 (451)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHH
T ss_pred CceEEEeCCCHHHHHHHHHHHHcCCEEE-----------EEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 6899999999999999999999999885 33335567788999999999987766677999999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
++.++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~--------------- 134 (451)
T 2vpq_A 70 TSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSD--------------- 134 (451)
T ss_dssp HHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCS---------------
T ss_pred HHcCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcc---------------
Confidence 99999999999999999988889999999999999999999999999999999999999999761
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhi 283 (2267)
..+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+..+. ...+++||+|++|++|+
T Consensus 135 ------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~ 208 (451)
T 2vpq_A 135 ------GLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHI 208 (451)
T ss_dssp ------SCBSCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEE
T ss_pred ------cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEE
Confidence 01678999999999999999999999999999999999999999998876531 24689999999998899
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
+|++++|++|+++.+..++|+++++|++..+.+|++.++++..+++.+.+.++++++||.|++++||++++++|++||||
T Consensus 209 ~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viE 288 (451)
T 2vpq_A 209 EIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFME 288 (451)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEE
Confidence 99999999899999999999999999999999999888999999999999999999999999999999984478899999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~ 443 (2267)
+|||+|+++++++.++|+|++++++++++|.+++.. +..+...+|++.
T Consensus 289 iN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~~~~~--------------------------------~~~~~~~~~a~~ 336 (451)
T 2vpq_A 289 MNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLPYK--------------------------------QEDIKLTGHAIE 336 (451)
T ss_dssp EECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCSCC--------------------------------GGGCCCCSEEEE
T ss_pred eeCCCCCceehhhHHhCCCHHHHHHHHHCCCCCCCc--------------------------------ccccCcCceEee
Confidence 999999999999999999999999999999987521 112234589999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEeccc
Q 000092 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523 (2267)
Q Consensus 444 aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v 523 (2267)
+++++++|..+|.|++|.+..+.++..++|++++.+.+|..+++++++++|||+++|+|+++|++++.++++++.|+| +
T Consensus 337 ~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g-~ 415 (451)
T 2vpq_A 337 FRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLG-I 415 (451)
T ss_dssp EEEESEEGGGTTEECCSBCSEEECCCSTTEEEECCCCTTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHTCEEES-S
T ss_pred eEeeeeccccccCCCCCEEeEEECCCCCCcccccccccCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhccEEeC-c
Confidence 999999999899999999999888877899888888999999889999999999999999999999999999999999 8
Q ss_pred ccCHHHHHHhcCCcccccccccchhhhhhhhh
Q 000092 524 RTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2267)
Q Consensus 524 ~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2267)
.||++||++++++|+|++|+++|+|||+++..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (451)
T 2vpq_A 416 DTTIPFHIKLLNNDIFRSGKFNTNFLEQNSIM 447 (451)
T ss_dssp CCSHHHHHHHHTCHHHHHTCCCTTTTTTSCTT
T ss_pred CCCHHHHHHHhCCHhhhcCCCccHHHhhhhhh
Confidence 99999999999999999999999999987543
No 22
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=100.00 E-value=5.5e-62 Score=620.11 Aligned_cols=447 Identities=32% Similarity=0.527 Sum_probs=402.3
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000092 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~I 123 (2267)
.+|||||||+|+|+.+++++++++++|++++ ++..+.+..+++.++||+++.+|.. ....+|.|.+.|
T Consensus 3 ~~~~k~ILI~g~g~~~~~i~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l 71 (461)
T 2dzd_A 3 TRRIRKVLVANRGEIAIRVFRACTELGIRTV-----------AIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGI 71 (461)
T ss_dssp CCCCSEEEECSCHHHHHHHHHHHHHHTCEEE-----------EEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHH
T ss_pred CCcCcEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEECCcccccchhhhCCEEEEcCCCCCccccccCHHHH
Confidence 3578999999999999999999999999885 3333555677899999999999864 334578999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++|++.++|+|+||+|+.+|++.+++.|++.|++++||+++++..++||..++++++++|||+|||..
T Consensus 72 ~~~~~~~~id~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~----------- 140 (461)
T 2dzd_A 72 IEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSD----------- 140 (461)
T ss_dssp HHHHHHTTCCEEECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCS-----------
T ss_pred HHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcc-----------
Confidence 999999999999999999999988899999999999999999999999999999999999999999862
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccc
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQ 279 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g 279 (2267)
..+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+..+ ....+++||+|++|
T Consensus 141 ----------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g 210 (461)
T 2dzd_A 141 ----------GPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN 210 (461)
T ss_dssp ----------SCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred ----------cCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC
Confidence 0167899999999999999999999999999999999999999999887654 23468999999999
Q ss_pred cceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~ 359 (2267)
++|++|++++|.+|+++.+++++|+.+++|++.++.+|++.++++..+++.+.+.++++++||.|.+++||+++ ++++
T Consensus 211 ~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~--~~~~ 288 (461)
T 2dzd_A 211 PKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVS--GDEF 288 (461)
T ss_dssp CEEEEEEEEECTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE--TTEE
T ss_pred CeEEEEEEEEcCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEe--CCCE
Confidence 89999999999999999999999999999999999999977999999999999999999999999999999999 4889
Q ss_pred EEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000092 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2267)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~G 439 (2267)
||||+|||+|++|+++++++|+|++++++++++|.+++.++ +.|. .+.....+|
T Consensus 289 ~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~------------------------~~~~--~~~~~~~~g 342 (461)
T 2dzd_A 289 YFIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHE------------------------VGIP--KQEDIRING 342 (461)
T ss_dssp EEEEEESSCCGGGHHHHHHHCCCHHHHHHHHHTTCCTTSTT------------------------TCCC--CGGGCCCCS
T ss_pred EEEEEECCCCCceeeEEeecCCCHHHHHHHHHcCCCccccc------------------------cccc--cccccccce
Confidence 99999999999999999999999999999999999886321 1111 112245679
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 440 hai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
|++++|+++++|..+|.|++|.++.+..+..++++.+.. +.+|++|+++|||++|+|+++|+|+++|++++.++++++.
T Consensus 343 ~~~~~ri~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~ 422 (461)
T 2dzd_A 343 YAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFR 422 (461)
T ss_dssp EEEEEEEESEEGGGTTEECCEECSEEECCCCTTEEEEESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCE
T ss_pred eEEEeeecccCCccCccCCCCeeeEEecCCCCCeEeecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcE
Confidence 999999999999999999999999888887788887654 4799999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
|+| ++||+.|+.+++.+|+|++|+++|+|||++
T Consensus 423 ~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
T 2dzd_A 423 IRG-IKTNIPFLENVVQHPKFLSGEYDTSFIDTT 455 (461)
T ss_dssp EES-SCCSHHHHHHHHHSHHHHTSCCCTTHHHHC
T ss_pred EeC-CcCCHHHHHHHhCChhhhCCCccchhhhcc
Confidence 999 799999999999999999999999999986
No 23
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=7.1e-62 Score=617.24 Aligned_cols=440 Identities=29% Similarity=0.509 Sum_probs=401.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|+|||||+|+|+.+++++++++++|++++ ++..+.+..+++.++||+++.+++. ...+|.|.+.|+++
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~~~p~-~~~~~~d~~~l~~~ 68 (451)
T 1ulz_A 1 MVNKVLVANRGEIAVRIIRACKELGIPTV-----------AIYNEVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINL 68 (451)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCEE-----------EEECGGGTTCHHHHHSSEEEECCSS-TTHHHHCHHHHHHH
T ss_pred CCceEEEECCcHHHHHHHHHHHHcCCeEE-----------EEechhhcccchhhhCcEEEEcCCC-cccccCCHHHHHHH
Confidence 68999999999999999999999999985 4444566778999999999998654 56689999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|+|+||+|+.+|++.+++.|++.|++++||+++++..++||..++++++++|||+|+|..
T Consensus 69 ~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 134 (451)
T 1ulz_A 69 ALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSD-------------- 134 (451)
T ss_dssp HHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCS--------------
T ss_pred HHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999988889999999999999999999999999999999999999999861
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rh 282 (2267)
..+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+..+ ....+++||+|++|++|
T Consensus 135 -------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e 207 (451)
T 1ulz_A 135 -------GVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKH 207 (451)
T ss_dssp -------SSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEE
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeE
Confidence 0167899999999999999999999999999999999999999999887653 22468999999998899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++|++++|.+|+++.+..|+|+++++|++.++.+|++.++++..+++.+.+.++++++||+|++++||++++ +|++|||
T Consensus 208 ~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~vi 286 (451)
T 1ulz_A 208 IEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFI 286 (451)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEE
T ss_pred EEEEEEEcCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCCEEEE
Confidence 999999998899999999999999999999999999878999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|+|||++++++++++++|+|++++++++++|.|++.. +..+...||++
T Consensus 287 EiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~--------------------------------~~~~~~~~~a~ 334 (451)
T 1ulz_A 287 EMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLTIK--------------------------------QEDVKFNGYAI 334 (451)
T ss_dssp EEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCCC--------------------------------GGGCCCCSEEE
T ss_pred EeeCCCCccchHHHHHhCCCHHHHHHHHHcCCCCCCc--------------------------------cccCCCceEEE
Confidence 9999999999999999999999999999999987621 11123457999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++++++++|..+|.|.+|++..+.++..++++++..+.+|..+++++|+++|||+++|+|+++|++++.++++++.|+|
T Consensus 335 ~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g- 413 (451)
T 1ulz_A 335 ECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITG- 413 (451)
T ss_dssp EEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEECS-
T ss_pred EEeccccCcccCcCCCCceeceEECCCCCCcccccCccCCCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999998899999999999988877889888888999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
++||+.||+++|.+|+|++|+++|+|||+++
T Consensus 414 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (451)
T 1ulz_A 414 VKTTIPLLINIMKEKDFKAGKFTTKYLEEHP 444 (451)
T ss_dssp SCCSHHHHHHHHHCHHHHHTCCCTTTTTTCG
T ss_pred ccCCHHHHHHHhCCHHHhcCCCcchhhhhhH
Confidence 9999999999999999999999999999874
No 24
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=100.00 E-value=1.8e-61 Score=613.29 Aligned_cols=441 Identities=32% Similarity=0.574 Sum_probs=401.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|+.+++++++++++|++++ ++..+.+.++++.++||+++.+|+.....+|.|.+.|+++
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~ 69 (449)
T 2w70_A 1 MLDKIVIANRGEIALRILRACKELGIKTV-----------AVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISA 69 (449)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEE-----------EEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHH
T ss_pred CCceEEEeCCcHHHHHHHHHHHHcCCeEE-----------EEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999885 3333556778999999999998655667789999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~~d~v~~~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 135 (449)
T 2w70_A 70 AEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSD-------------- 135 (449)
T ss_dssp HHHHTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCS--------------
T ss_pred HHHcCCCEEEECCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcc--------------
Confidence 999999999999999999988889999999999999999999999999999999999999999861
Q ss_pred CcccccccccCCHHHH-HHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccc
Q 000092 207 PDDVYRQACVYTTEEA-IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSR 281 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea-~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~r 281 (2267)
..+++.+++ .++++++|||+||||..|+||+|+++|++.+|+.++++.+..+. .+.+++||+|++|++
T Consensus 136 -------~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~ 208 (449)
T 2w70_A 136 -------GPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPR 208 (449)
T ss_dssp -------SCCCSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCE
T ss_pred -------cccCCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCe
Confidence 016678888 88899999999999999999999999999999999998876531 246899999999889
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|++|+++++.+|+++++..|+|+++++|++..+.+|++.++++..+++.+.+.++++++||.|++++||+++ ++++||
T Consensus 209 e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~--~~~~~v 286 (449)
T 2w70_A 209 HVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYF 286 (449)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEE
T ss_pred EEEEEEEEcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE--CCCEEE
Confidence 999999999889999999999999999999999999987899999999999999999999999999999999 488999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
||+|||+++++++++.++|+|++++++++++|.|++. .+..+...||+
T Consensus 287 iEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~--------------------------------~~~~~~~~~~~ 334 (449)
T 2w70_A 287 IEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSI--------------------------------KQEEVHVRGHA 334 (449)
T ss_dssp EEEECSCCTTHHHHHHHHCCCHHHHHHHHHHTCCCSS--------------------------------CGGGCCCCSEE
T ss_pred EEEECCCCccchHHHHHhCCCHHHHHHHHHCCCCCCC--------------------------------chhccccceeE
Confidence 9999999999999999999999999999999998752 01122345899
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+++++++++| .+|.|.+|.+..+.++..++++++..+.+|..+++++++++|||+++|+|+++|++++.++++++.++|
T Consensus 335 ~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~~g 413 (449)
T 2w70_A 335 VECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDG 413 (449)
T ss_dssp EEEEEECBCT-TTCCBCCEECCEEECCCSTTEEEECCCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEEES
T ss_pred EEEeecccCc-cccCCCCCEeceEECCCCCcEEEEeccccCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEEeC
Confidence 9999999999 899999999998888877889888888899999889999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCCcccccccccchhhhhhhhh
Q 000092 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2267)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2267)
++||+.||+++|++|+|++|+++|+|||+++++
T Consensus 414 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
T 2w70_A 414 -IKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGL 446 (449)
T ss_dssp -SCCSHHHHHHHHTCHHHHHCCCCTTHHHHHHTC
T ss_pred -cCCCHHHHHHHHcChhhccCCceehhhhhhhhc
Confidence 999999999999999999999999999998654
No 25
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=100.00 E-value=1.1e-45 Score=461.67 Aligned_cols=387 Identities=14% Similarity=0.139 Sum_probs=318.5
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.+++||||+|+|+.+++++++++++|++++ ++ +..++++++.++||+++.+| |.|.+.|++
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v-----------~v-~~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~ 65 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTI-----------AG-TMPNAHKPCLNLADEISYMD-------ISNPDEVEQ 65 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEE-----------EE-ECSSCCHHHHHHCSEEEECC-------TTCHHHHHH
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEE-----------EE-cCCCCCCcchhhCCeEEEec-------CCCHHHHHH
Confidence 346899999999999999999999999985 33 12335789999999999884 568999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|+++++|+|+|+ |+.++...+++.+++.|+ +||+++++..++||..++++++++|||+|+|..
T Consensus 66 ~~~~~~~d~v~~~-~~~~~~~~~a~~~~~~gl--~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------- 129 (403)
T 4dim_A 66 KVKDLNLDGAATC-CLDTGIVSLARICDKENL--VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFV------------- 129 (403)
T ss_dssp HTTTSCCSEEECC-SCSTTHHHHHHHHHHHTC--SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEEC-------------
T ss_pred HHHHcCCCEEEeC-CcchhHHHHHHHHHHcCc--CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-------------
Confidence 9999999999997 777777778888888896 699999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeE
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieV 285 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+..+.++++|+|++| .|++|
T Consensus 130 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv 198 (403)
T 4dim_A 130 ----------VRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGA 198 (403)
T ss_dssp ----------CCSHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEE
T ss_pred ----------eCCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEE
Confidence 7899999999999999999999999999999999999999999999988877789999999987 79999
Q ss_pred EEEEcCCCCEEEecccccccccc--cceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCcee-eeEEEEEEEccCCcEEEe
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRR--HQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVG-AATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr--~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~G-a~tVEfl~d~~~g~~yfL 362 (2267)
.++.+ +|++..+.......... ........|+. ++++..++|.+.+.++++++||.| ++++||+++ ++++||+
T Consensus 199 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~--~~~~~~i 274 (403)
T 4dim_A 199 QAFVY-KNDVLFVMPHGDETYMSHTAVPVGHYVPLD-VKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYII 274 (403)
T ss_dssp EEEEE-TTEEEEEEEEEEEEEESSSEEEEEEEESCC-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE--TTEEEEE
T ss_pred EEEEE-CCEEEEEEEecceeccCCCCcceeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE--CCcEEEE
Confidence 99875 36666543221111000 00111234666 889999999999999999999996 999999998 7899999
Q ss_pred eeCccCcCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000092 363 ELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2267)
Q Consensus 363 EINpRlqgeh--pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gh 440 (2267)
|+|||+++++ .+++.++|+|++++++++++|.|++.++ +......+|
T Consensus 275 EiN~R~~~~~~~~~~~~~~G~d~~~~~~~~~~G~~~~~~~-------------------------------~~~~~~~~~ 323 (403)
T 4dim_A 275 ELTGRVGANCLPELVEINYGIEYYKMIASMAISENPLVFW-------------------------------SQKSKENKA 323 (403)
T ss_dssp EEESSCCSTTHHHHHHHHHTSCHHHHHHHHHTTCCTHHHH-------------------------------TTCCSSCCE
T ss_pred EEcCCCCCCcHHHHHHHHhCcCHHHHHHHHHcCCCccccc-------------------------------ccccccccc
Confidence 9999999986 4788999999999999999999873211 111122344
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCc--E-EEEEeeeeCCcccccCCc--ccEEEEEEeCCHHHHHHHHHHhhc
Q 000092 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPN--V-WAYFSVKSGGGIHEFSDS--QFGHVFAFGESRALAIANMVLGLK 515 (2267)
Q Consensus 441 ai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~--V-~~~~~v~~G~~i~~~~Ds--~~g~via~G~~reeA~~~l~~AL~ 515 (2267)
+.+|++. |.|.+|+|..+.++..++ + .++..+.+|..|++++|| ++|+|+++|+|+++|++++.++++
T Consensus 324 -~~~~~~~------~~~~~G~i~~~~~~~~~~~~v~~~~~~~~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~~~~~~~~ 396 (403)
T 4dim_A 324 -GLARMII------ETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIIN 396 (403)
T ss_dssp -EEEEEEC------CSSCCEEEEEEEECCCCCTTEEEEEECCCTTCEECCSCSGGGCCEEEEEEESSHHHHHHHHHHHHT
T ss_pred -ceEEEEE------ecCCCeEEEeeecccccCCCeEEEEEEcCCCCEeCCCCCCCceeEEEEEEeCCHHHHHHHHHHHhc
Confidence 5678865 568899999988765443 3 356789999999999999 899999999999999999999999
Q ss_pred ceEEe
Q 000092 516 EIQIR 520 (2267)
Q Consensus 516 el~I~ 520 (2267)
+++|+
T Consensus 397 ~~~i~ 401 (403)
T 4dim_A 397 NINII 401 (403)
T ss_dssp TEEEE
T ss_pred cEEEE
Confidence 99885
No 26
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=100.00 E-value=6.8e-43 Score=431.21 Aligned_cols=356 Identities=15% Similarity=0.109 Sum_probs=279.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
||||||+|+|..+..+++++|++||+|+ ++ |.++++++.++||+++++|. +.|.+.+++++
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv-----------~v--d~~~~~~~~~~aD~~~~~~~------~~d~~~~~~~~ 61 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVV-----------LV--DKNPQALIRNYADEFYCFDV------IKEPEKLLELS 61 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESCTTCTTTTTSSEEEECCT------TTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCChhHhhCCEEEECCC------CcCHHHHHHHh
Confidence 7999999999999999999999999986 55 66788999999999999964 34667777666
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+ ++|+|+|++|+.+++..+...+++.|+ ++||++++++.++||..+|++++++|||+|+|..
T Consensus 62 ~--~~D~v~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~--------------- 123 (363)
T 4ffl_A 62 K--RVDAVLPVNENLACIEFLNSIKEKFSC-PVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRP--------------- 123 (363)
T ss_dssp T--SSSEEEECCCCHHHHHHHHHHGGGCSS-CBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSC---------------
T ss_pred c--CCCEEEECCCChhHHHHHHHHHHHCCC-ccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCcee---------------
Confidence 4 689999999987765444454555555 5799999999999999999999999999998643
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+|||+||||+.|+||+|+++|+|.+++... ...+++|+|++| +|++|++
T Consensus 124 ---------------------ig~P~vvKp~~g~g~~gv~~v~~~~~~~~~---------~~~~~~ee~i~g-~e~sv~~ 172 (363)
T 4ffl_A 124 ---------------------SKPPYFVKPPCESSSVGARIIYDDKDLEGL---------EPDTLVEEYVEG-EVVSLEV 172 (363)
T ss_dssp ---------------------SSSCEEEECSSCCTTTTCEEEC------CC---------CTTCEEEECCCS-EEEEEEE
T ss_pred ---------------------cCCCEEEEECCCCCCcCeEEeccHHHhhhh---------ccchhhhhhccC-cEEEEEE
Confidence 489999999999999999999999887532 457899999987 7999999
Q ss_pred EEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCcc
Q 000092 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2267)
Q Consensus 288 l~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2267)
++|+.+.++....++|..++.+++.+..+|.. +++++.+.++++++||+|+++|||+++ ++++||||+|||
T Consensus 173 ~~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~~a~~~~~~l~~~G~~~vef~~~--~~~~~viEiN~R 243 (363)
T 4ffl_A 173 VGDGSHFAVVKETLVHIDETYDCHMVTPLPAN-------PLFRQISHDLAANLPLKGIMDVEAIFG--PKGLRVIEIDAR 243 (363)
T ss_dssp EEESSCEEECCCEEEEECTTSCEEEEEECCCC-------HHHHHHHHHHHHTTTCEEEEEEEEEEE--TTEEEEEEEECS
T ss_pred EEECCeEEEEEEEEeccCCcccceeecchhHH-------HHHHHHHHHHHHhCCccceeeeeeEEe--CCeEEEEEEeCC
Confidence 99998888888888888888888777655543 568899999999999999999999999 577999999999
Q ss_pred CcCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 368 LQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 368 lqgehp-vtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
++++++ ++++++|+|++++++++++|.+++.. .....+|++.+++
T Consensus 244 ~~g~~~~~~~~~~g~dl~~~~~~~~~g~~~~~~----------------------------------~~~~~~~~~~~~~ 289 (363)
T 4ffl_A 244 FPSQTPTVVYYSSGINLIELLFRAFTDGVEEIR----------------------------------AIPENKYCIYEHL 289 (363)
T ss_dssp CCSSHHHHHHHHHCCCHHHHHHHHTTTCCCCC--------------------------------------CCCEEEEEEE
T ss_pred CCCChHHHHHHHHCcCHHHHHHHHHCCCCCCcc----------------------------------ccCCCceEEEEEE
Confidence 999886 89999999999999999999987521 1122356666666
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeC-CcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000092 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSG-GGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G-~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2267)
.+++. ..+.|..+.+. ...+++.. +....+ +.....+++++|+|++||+||+||++++.+||+.++.+
T Consensus 290 ~~~~~-~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~vi~~G~~~~eA~~k~~~al~~i~~~ 358 (363)
T 4ffl_A 290 MFGEN-GVLIPVGEQVL----SMGSDYGK-FYEEPGIEIFLCKGEYPVFTMVFWGKDREETGAKRCKGLSVLKER 358 (363)
T ss_dssp EECGG-GBEEECCHHHH----TTCSEEEE-EEEETTEEEEEEESSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCC-CccCCCCceEE----ecCCCeeE-EEecCCCCCEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 66442 33444443332 12223322 222222 12234688999999999999999999999999988654
No 27
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=4.2e-42 Score=475.22 Aligned_cols=396 Identities=19% Similarity=0.268 Sum_probs=326.4
Q ss_pred CCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 46 KPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 46 ~~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
+.++||||+|+|++ +.+++++++++||+++ ++.++.+....+.++||+++..|
T Consensus 5 ~~~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~i~p----- 68 (1073)
T 1a9x_A 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-----------NVNSNPATIMTDPEMADATYIEP----- 68 (1073)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-----------EECSCTTCGGGCGGGSSEEECSC-----
T ss_pred CCCCEEEEECCCcccccccccccchHHHHHHHHHHcCCEEE-----------EEeCCcccccCChhhCcEEEECC-----
Confidence 56899999999985 6789999999999986 44444444446788999988554
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcC-CCCC--chH--HHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPGWGHA-SEIP--ELP--DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG~G~~-sEn~--~la--~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp 189 (2267)
.|.+.|.++++++++|+|+|++|+. .++. .+. ..|++.|+.++||+++++..++||..++++++++|||+|+
T Consensus 69 ---~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~ 145 (1073)
T 1a9x_A 69 ---IHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETAR 145 (1073)
T ss_dssp ---CCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCS
T ss_pred ---CCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCC
Confidence 3689999999999999999998852 1211 122 2677889999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000092 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2267)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2267)
|.. +++.+++.++++++|||+||||+.|+||+|+++|+|.+|+.++++.+....+..
T Consensus 146 ~~~-----------------------v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~ 202 (1073)
T 1a9x_A 146 SGI-----------------------AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTK 202 (1073)
T ss_dssp EEE-----------------------ESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTS
T ss_pred EEE-----------------------ECCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCC
Confidence 876 788999999999999999999999999999999999999999999888777777
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccc------cceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR------HQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr------~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~ 343 (2267)
+++||+|++|.+|+++++++|.+|+++.+ |++++. +++.++.+|+..++++..++|.+.+.++++++||+
T Consensus 203 ~vlvEe~I~G~~E~~v~v~~d~~g~~v~~----~~~e~~dp~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~ 278 (1073)
T 1a9x_A 203 ELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVE 278 (1073)
T ss_dssp CEEEEECCTTSEEEEEEEEECTTCCEEEE----EEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cEEEEEccCCCeEEEEEEEEeCCCCEEEE----EEEecccCCccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999998999999999999999887 666553 35567778998899999999999999999999999
Q ss_pred -eeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 344 -GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 344 -Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
|.++|||++++++|++||||||||++++++++++++|+|+++.++++++|.+++.+++
T Consensus 279 ~G~~~vdf~~~~~~g~~~viEiNpR~~~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~~--------------------- 337 (1073)
T 1a9x_A 279 TGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMN--------------------- 337 (1073)
T ss_dssp SEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBC---------------------
T ss_pred cCceEEEEEEECCCCCEEEEEecCCCCccHHHHHHHhCCCHHHHHHHHHcCCChHHhhc---------------------
Confidence 9999999999657899999999999999999999999999999999999999874321
Q ss_pred cccCCCccccCCCCCceEEEEEEEccC-CCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeC
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSE-DPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGE 501 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aE-dp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~ 501 (2267)
+++.+ +|. .|.|+.|.+. +.+|..+ .+...+.+..+...++| +|||+++|+
T Consensus 338 ----------------------~i~~~~~~a-~f~p~~~~v~-~~ip~~~---~~~~~~~~~~~~~~~~~-~G~v~~~g~ 389 (1073)
T 1a9x_A 338 ----------------------DITGGRTPA-SFEPSIDYVV-TKIPRFN---FEKFAGANDRLTTQMKS-VGEVMAIGR 389 (1073)
T ss_dssp ----------------------TTTTTCSBS-CSCCBCSSEE-EEEEECC---GGGCTTSCCBCCSSCCC-CEEEEEEES
T ss_pred ----------------------cccCccCHH-HcccCCCcEE-EEccccc---ccccCCCCcccCCCccC-cEEEEEEcC
Confidence 12223 342 5667766552 2222211 01112234556666666 899999999
Q ss_pred CHHHHHHHHHHhhcceEEecccccC--------HHHHHHhcCCcc
Q 000092 502 SRALAIANMVLGLKEIQIRGEIRTN--------VDYTIDLLHASD 538 (2267)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G~v~tn--------~~~l~~ll~~~~ 538 (2267)
|++||+++|.++|+ +.+.| +.+| .+.|.+.|.+|.
T Consensus 390 ~~~ea~~ka~~~l~-~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~ 432 (1073)
T 1a9x_A 390 TQQESLQKALRGLE-VGATG-FDPKVSLDDPEALTKIRRELKDAG 432 (1073)
T ss_dssp SHHHHHHHHHHHSS-SSCSS-SCCSSCTTCTTHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHhhc-ccccC-cCccccccccccHHHHHHHHhCCC
Confidence 99999999999998 88999 6644 577888888877
No 28
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=100.00 E-value=3e-41 Score=425.15 Aligned_cols=395 Identities=15% Similarity=0.128 Sum_probs=307.0
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
+..|+|+|+|+|.....++++||++|++++ +++++.+..+.+...+|+++.+|...+.+.+ .+.+.+
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv-----------~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~--~~~~~~ 69 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVT-----------FFYNSAEDFPGNLPAVERCVPLPLFEDEEAA--MDVVRQ 69 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEE-----------EEEETTSCCCCSCTTEEEEEEECTTTCHHHH--HHHHHH
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEE-----------EEECCCcccccCHhhccEEEecCCCCCHHHH--HHHHHH
Confidence 346899999999999999999999999985 3334555667788899999999754333333 566777
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
++++.++|+|+++++...+ ..+..+++.|+ +||+++++..++||..+|++++++|||+|+|..
T Consensus 70 ~~~~~~id~V~~~~e~~~~--~~a~l~e~lgl--pg~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 132 (425)
T 3vot_A 70 TFVEFPFDGVMTLFEPALP--FTAKAAEALNL--PGLPFTTMENCRNKNKTRSILQQNGLNTPVFHE------------- 132 (425)
T ss_dssp HHHHSCCSEEECCCGGGHH--HHHHHHHHTTC--SSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------------
T ss_pred hhhhcCCCEEEECCchhHH--HHHHHHHHcCC--CCCCHHHHHHhhCHHHHHHHHHHCCCCCCceec-------------
Confidence 8888999999988554332 13445566674 599999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC---------CCCcEEEEEe
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV---------PGSPIFIMKV 276 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~---------~~~~I~VEey 276 (2267)
+++.+++. +.++|||+||||..|+||+||++|+|.+|+.++++.+.... .+.++++|+|
T Consensus 133 ----------~~~~~~~~--~~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~ 200 (425)
T 3vot_A 133 ----------FHTLADLE--NRKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQF 200 (425)
T ss_dssp ----------ESSGGGGT--TCCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEEC
T ss_pred ----------cCcHHHHH--HhhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEE
Confidence 45555553 35799999999999999999999999999999999886543 2568999999
Q ss_pred ccccceeeEEEEEcCCCC--EEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce-eeeEEEEEEE
Q 000092 277 ASQSRHLEVQLLCDQYGN--VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYS 353 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~--vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~-Ga~tVEfl~d 353 (2267)
++| +|++|+++.++ |+ ++.+..+.|+.+..+++.....|+. ++++..+++.+.+.++++++|+. |++|+||+++
T Consensus 201 i~G-~e~sv~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~Pa~-l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~ 277 (425)
T 3vot_A 201 IDG-PEFAIETLSIQ-GNVHVLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLD 277 (425)
T ss_dssp CCS-CEEEEEEEEET-TEEEEEEEEEEECCCCSBCCCCEEEESCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred ecC-cEEEEEEEEeC-CcEEEEeEEEEeccCCCccccceEeeccc-CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEE
Confidence 987 79999988764 44 4455666677777777777778987 88999999999999999999995 9999999998
Q ss_pred ccCCcEEEeeeCccCcCC---cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCcc
Q 000092 354 METGEYYFLELNPRLQVE---HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFD 430 (2267)
Q Consensus 354 ~~~g~~yfLEINpRlqge---hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~ 430 (2267)
+ +|++||||+|||++|. |.++++++|+|+++++++.++|.+.... +
T Consensus 278 ~-dG~~~~iEiN~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~~---------------------------~--- 326 (425)
T 3vot_A 278 K-DGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSE---------------------------F--- 326 (425)
T ss_dssp T-TCCEEEEEEESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGGG---------------------------S---
T ss_pred e-CCcEEEEEEecCCCCCCchHHHHHHHHCCCHHHHHHHHHCCCccccc---------------------------c---
Confidence 4 7789999999999775 5688999999999999999999654310 0
Q ss_pred ccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc----ccCCCcE-EEEEeeeeCCccccc--CCcccEEEEEEeCCH
Q 000092 431 QAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS----FKSKPNV-WAYFSVKSGGGIHEF--SDSQFGHVFAFGESR 503 (2267)
Q Consensus 431 ~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~----~~s~~~V-~~~~~v~~G~~i~~~--~Ds~~g~via~G~~r 503 (2267)
.....+..++....+.+ |.+|++..+. +...|+| ++...+++|..|.++ +++++|||+++|+|+
T Consensus 327 -~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~ 397 (425)
T 3vot_A 327 -EGEIRPVRTAGNYIIPV--------QGSGTFEKIDGLEEVKQRQEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSY 397 (425)
T ss_dssp -CSCCCCSSEEEEEECCC--------CSCEEEEEEETHHHHHTCTTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSH
T ss_pred -ccccccceEEEEEEEcC--------CCCeEEEecCCHHHHhcCCCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCH
Confidence 01122334554444433 3468776653 3456787 677778899998765 567899999999999
Q ss_pred HHHHHHHHHhhcceEEecccccCH
Q 000092 504 ALAIANMVLGLKEIQIRGEIRTNV 527 (2267)
Q Consensus 504 eeA~~~l~~AL~el~I~G~v~tn~ 527 (2267)
++|+++++++++.++|.. ++|+
T Consensus 398 ~ea~~~~~~~~~~i~i~~--~~~i 419 (425)
T 3vot_A 398 EECEAFYRELDDELHIIY--QNNL 419 (425)
T ss_dssp HHHHHHHHHHHHHCEEEE--CC--
T ss_pred HHHHHHHHHHhCccEEEE--eCCC
Confidence 999999999999999975 4554
No 29
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=2e-40 Score=412.46 Aligned_cols=378 Identities=15% Similarity=0.162 Sum_probs=299.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+++||||+|+|..+..++++++++|++++ ++ |.++++++.++||+.+.+| |.|.+.|+++
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~d~~~~~~-------~~d~~~l~~~ 69 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVI-----------AV--DRYADAPAMHVAHRSHVIN-------MLDGDALRRV 69 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEE-----------EE--ESSTTCGGGGGSSEEEECC-------TTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--ECCCCCchhhhccceEECC-------CCCHHHHHHH
Confidence 46799999999999999999999999875 34 3345678889999998874 5788999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
|++.++|+|+|++++...+ +++.|++.|+ ++||++++++.++||..+++++ +++|||+|+|..
T Consensus 70 ~~~~~~d~v~~~~e~~~~~--~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~------------- 133 (391)
T 1kjq_A 70 VELEKPHYIVPEIEAIATD--MLIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYRF------------- 133 (391)
T ss_dssp HHHHCCSEEEECSSCSCHH--HHHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEE-------------
T ss_pred HHHcCCCEEEECCCcCCHH--HHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeee-------------
Confidence 9999999999998876643 5677888999 6799999999999999999999 899999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEecccccee
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~I~VEeyI~g~rhi 283 (2267)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|+++++|+
T Consensus 134 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~ 203 (391)
T 1kjq_A 134 ----------ADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEI 203 (391)
T ss_dssp ----------ESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEE
T ss_pred ----------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEE
Confidence 778899999999999999999999999999999999999999999887543 24689999999966899
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
+|.++.++.| .. +...-..............|++ ++++..+++.+.+.++++++||+|++++||+++ ++++||||
T Consensus 204 sv~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~--~~~~~viE 278 (391)
T 1kjq_A 204 TLLTVSAVDG-VH-FCAPVGHRQEDGDYRESWQPQQ-MSPLALERAQEIARKVVLALGGYGLFGVELFVC--GDEVIFSE 278 (391)
T ss_dssp EEEEEEETTE-EE-ECCCEEEEEETTEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEE--TTEEEEEE
T ss_pred EEEEEEeCCC-eE-EccCcceEEECCEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCcEEEEE
Confidence 9999998766 22 2211000000011111234776 889999999999999999999999999999999 34899999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~ 443 (2267)
+|||+++++.++...+|+|++++++++++|.+++. +...+|++.
T Consensus 279 iN~R~~~~~~~~~~~~g~~~~~~~~~~~~G~~~~~------------------------------------~~~~~~~~~ 322 (391)
T 1kjq_A 279 VSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGG------------------------------------IRQYGPAAS 322 (391)
T ss_dssp EESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCC------------------------------------CCBCSSEEE
T ss_pred EECCCCCCcceeeeecCcCHHHHHHHHHcCCCCCC------------------------------------ccccCcEEE
Confidence 99999998766666679999999999999988752 112467888
Q ss_pred EEEccCCCCCCCCCC-CCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 444 VRVTSEDPDDGFKPT-SGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 444 aRI~aEdp~~~F~Ps-~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+++++++|.. .|. .|... +.. |++.+... +.....+++.+|||+++|+|+++|++++.++++.++|+|
T Consensus 323 ~~~~~~~~~~--~~~~~~~~~---~~~-pg~~v~~~----~~~~~~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 391 (391)
T 1kjq_A 323 AVILPQLTSQ--NVTFDNVQN---AVG-ADLQIRLF----GKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG 391 (391)
T ss_dssp EEECCEEEES--SCEEECGGG---SCB-TTEEEEEC----CCCCEEEECCCEEEEEECSSHHHHHHHHHHHHHHCEEEC
T ss_pred EEEEccCccc--ccccccHHH---HhC-CCCEEEEe----ccCCCCCCCeEEEEEEecCCHHHHHHHHHHHHhhheecC
Confidence 8999987532 232 23322 222 55433322 223355778899999999999999999999999999874
No 30
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=5.9e-40 Score=414.32 Aligned_cols=390 Identities=16% Similarity=0.180 Sum_probs=296.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+++||||+|+|..+..++++++++|++++ ++ |.++++++.++||+.+.+| |.|.+.|+++
T Consensus 18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~-----------~v--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~ 77 (433)
T 2dwc_A 18 SAQKILLLGSGELGKEIAIEAQRLGVEVV-----------AV--DRYANAPAMQVAHRSYVGN-------MMDKDFLWSV 77 (433)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCHHHHHSSEEEESC-------TTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--ECCCCChhhhhcceEEECC-------CCCHHHHHHH
Confidence 45799999999999999999999999885 34 3345678889999998874 5788999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
|++.++|+|++++++.+. .+++.|++.|+ ++||++++++.++||..+++++ +++|||+|+|..
T Consensus 78 ~~~~~~d~V~~~~e~~~~--~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~------------- 141 (433)
T 2dwc_A 78 VEREKPDAIIPEIEAINL--DALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMY------------- 141 (433)
T ss_dssp HHHHCCSEEEECSSCSCH--HHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEE-------------
T ss_pred HHHcCCCEEEECcccCCH--HHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeE-------------
Confidence 999999999999987654 46777888998 7799999999999999999999 899999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEecccccee
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~I~VEeyI~g~rhi 283 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+. .+.+++||+|+++++|+
T Consensus 142 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~ 211 (433)
T 2dwc_A 142 ----------ATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEV 211 (433)
T ss_dssp ----------ESSHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEE
T ss_pred ----------eCCHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeE
Confidence 678899999999999999999999999999999999999999998776543 24689999999966899
Q ss_pred eEEEEEcC--CCCEE-EecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 284 EVQLLCDQ--YGNVA-ALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 284 eVqvl~D~--~G~vi-~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
+|.++.+. +|+++ .+...-..............|++ ++++..+++.+.+.++++++||+|++++||+++ ++++|
T Consensus 212 sv~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~--~~~~~ 288 (433)
T 2dwc_A 212 TELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGGLGIFGVEMFVK--GDKVW 288 (433)
T ss_dssp EECCEEEECTTSCEEEEEECCEEEEESSSSEEEEEESCC-CCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEE--TTEEE
T ss_pred EEEEEecccCCCCEeEEEecccceEEEcCEEEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCcEE
Confidence 99999875 67742 22111000111111122235776 889999999999999999999999999999999 34899
Q ss_pred EeeeCccCcCCccee--hhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000092 361 FLELNPRLQVEHPVT--EWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2267)
Q Consensus 361 fLEINpRlqgehpvt--E~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2267)
|||+|||+++.+..+ ..++|+|++++++++++|.|++... +. .+..+...
T Consensus 289 viEiN~R~~~~~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~---------~~-------------------~~~~~~~~ 340 (433)
T 2dwc_A 289 ANEVSPRPHDTGMVTLASHPPGFSEFALHLRAVLGLPIPGEW---------VD-------------------GYRLFPML 340 (433)
T ss_dssp EEEEESSCCGGGGGHHHHSCTTCSHHHHHHHHHHTCCCCCEE---------ET-------------------TEEEECCS
T ss_pred EEEEeCCcCCCcceehhHhccCCCHHHHHHHHHcCCCCCccc---------cc-------------------cccccccc
Confidence 999999999875433 4467999999999999999875200 00 00112335
Q ss_pred eEEEEEEEccCCCCCCCCCC-CCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce
Q 000092 439 GHCVAVRVTSEDPDDGFKPT-SGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2267)
Q Consensus 439 Ghai~aRI~aEdp~~~F~Ps-~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2267)
+|++.+++++++|. ..|. .|....+ ..|++.+... +.....+++.+|||+++|+|+++|++++.++++.+
T Consensus 341 ~~a~~~~v~~~~~~--~~~~i~g~~~~~---~~pg~~v~~~----~~~~~~~~~~lg~v~~~g~~~~ea~~~~~~~~~~i 411 (433)
T 2dwc_A 341 IPAATHVIKAKVSG--YSPRFRGLVKAL---SVPNATVRLF----GKPEAYVGRRLGIALAWDKDVEVAKRKAEMVAHMI 411 (433)
T ss_dssp SCEEEEEEECSSCE--ESCEEECHHHHT---TSTTEEEEEC----CCSEECTTCEEEEEEEECSSHHHHHHHHHHHHHTC
T ss_pred ccEEEEEEEcCCCC--cCcCcchHHHHh---hCCCcEEEEe----cCCCCCCCCeEEEEEEEeCCHHHHHHHHHHHHhhe
Confidence 78888999998753 2222 2332212 2344432221 22234577889999999999999999999999999
Q ss_pred EEecc
Q 000092 518 QIRGE 522 (2267)
Q Consensus 518 ~I~G~ 522 (2267)
.++|+
T Consensus 412 ~~~~~ 416 (433)
T 2dwc_A 412 ELRTR 416 (433)
T ss_dssp EEECT
T ss_pred EEEee
Confidence 99993
No 31
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-39 Score=402.09 Aligned_cols=360 Identities=20% Similarity=0.215 Sum_probs=294.3
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||||+|+|..+..++++++++|++++ ++ |.+.+.++.++||+ +.. +|.|.+.++++|
T Consensus 1 ~iliiG~g~~g~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~a~~-~~~-------~~~d~~~l~~~~-- 57 (369)
T 3aw8_A 1 MIGILGGGQLGRMLALAGYPLGLSFR-----------FL--DPSPEACAGQVGEL-VVG-------EFLDEGALLRFA-- 57 (369)
T ss_dssp CEEEECCSHHHHHHHHHHTTBTCCEE-----------EE--ESCTTCGGGGTSEE-EEC-------CTTCHHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCChHHHhhce-Eec-------CCCCHHHHHHHH--
Confidence 69999999999999999999999875 44 33355677889998 543 567899999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
.++|+|++++++.. ..+.+.|++.| ++||+++++..++||..++++++++|||+|+|..
T Consensus 58 ~~~d~v~~~~e~~~--~~~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~----------------- 116 (369)
T 3aw8_A 58 EGLALVTYEFENVP--VEAARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHP----------------- 116 (369)
T ss_dssp TTCSEEEECCTTCC--HHHHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEE-----------------
T ss_pred hCCCEEEECCCCcC--HHHHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee-----------------
Confidence 68999999987653 45677888888 7899999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+++.+++.++++++|||+||||..|+ ||+|+++|+|.+|+.++++.+. +.+++||+|+++++|++|+++
T Consensus 117 ------~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~~g~e~sv~~~ 186 (369)
T 3aw8_A 117 ------VDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALG----GRGLILEGFVPFDREVSLLAV 186 (369)
T ss_dssp ------ESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTC----SSSEEEEECCCCSEEEEEEEE
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcC----CCcEEEEEcCCCCEEEEEEEE
Confidence 77899999999999999999999999 9999999999999999887652 568999999996699999999
Q ss_pred EcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccC
Q 000092 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2267)
+|++|+++.+ ...+..++.+++.....|++.++++..+++.+.+.++++++||+|++++||+++ .+++||||+|||+
T Consensus 187 ~d~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~--~~~~~viEiN~R~ 263 (369)
T 3aw8_A 187 RGRTGEVAFY-PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQV--GEELLFNEMAPRV 263 (369)
T ss_dssp ECTTSCEEEC-CCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESSC
T ss_pred ECCCCCEEEE-CCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEEeCCc
Confidence 9988888764 444556666666667789887889999999999999999999999999999999 3789999999999
Q ss_pred cCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEcc
Q 000092 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTS 448 (2267)
Q Consensus 369 qgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~a 448 (2267)
++++..+++.+|+|+...+++.++|.+++.+ ...++++.+++++
T Consensus 264 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~------------------------------------~~~~~~~~~~~~~ 307 (369)
T 3aw8_A 264 HNSGHWTIEGAETSQFENHLRAVLGLPLGST------------------------------------APRGQSAMVNLIG 307 (369)
T ss_dssp CGGGTTHHHHBSSCHHHHHHHHHHTCCCCCC------------------------------------CBCSEEEEEEEES
T ss_pred CCccceeeeeecCCHHHHHHHHHcCCCCCCc------------------------------------cccccEEEEEEeC
Confidence 9988888889999999999999999988631 1235688899998
Q ss_pred CCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 449 EDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 449 Edp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
++| + +.. +...|++... +. |..++ ....+|||+++|+|+++|++++.++++.+.
T Consensus 308 ~~~--------~-~~~--~~~~p~~~~~--~~-g~~~~--~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 308 EKP--------P-FAE--VLKVEGAHLH--WY-GKAVR--PGRKVGHITLRRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp CCC--------C-HHH--HHTSTTEEEE--EC-CCCCC--TTCEEEEEEEEESSHHHHHHHHHHHHTTSS
T ss_pred CCc--------h-HHH--hccCCCcEEE--Ee-cCCCC--CCCeEEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 762 1 222 1223454221 11 22222 236799999999999999999999999876
No 32
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=4.2e-39 Score=405.25 Aligned_cols=372 Identities=20% Similarity=0.230 Sum_probs=297.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+.+||||+|+|+.+.+++++++++||+++ +. |.++++++.++||+++.. +|.|.+.|.++
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~-----------v~--d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~~ 93 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVA-----------VL--DPDPASPAGAVADRHLRA-------AYDDEAALAEL 93 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--CSCTTCHHHHHSSEEECC-------CTTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--CCCCcCchhhhCCEEEEC-------CcCCHHHHHHH
Confidence 45799999999999999999999999985 44 667889999999998865 57899999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+ ++|+|+++ +...+..+.+.|++. .++||++++++.++||..+|++++++|||+|+|..
T Consensus 94 a~--~~D~V~~~--~e~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 153 (419)
T 4e4t_A 94 AG--LCEAVSTE--FENVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVV-------------- 153 (419)
T ss_dssp HH--HCSEEEEC--CTTCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEE--------------
T ss_pred Hh--cCCEEEEc--cCcCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEE--------------
Confidence 94 68999966 445555677888877 48899999999999999999999999999999876
Q ss_pred CcccccccccCCHHHHHHHHhh----hCCcEEEeec-CCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 207 PDDVYRQACVYTTEEAIASCQV----VGYPAMIKAS-WGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~----IGyPVVIKPs-~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
+++.+++.+++++ + ||+||||. .|+||+|+++|+|.+|+.++++.+ .+.+++||+|+++++
T Consensus 154 ---------v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~ 219 (419)
T 4e4t_A 154 ---------IESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL----GGVPCVLEKRLPLKY 219 (419)
T ss_dssp ---------ECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT----TTCCEEEEECCCEEE
T ss_pred ---------ECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc----CCCcEEEeecCCCCe
Confidence 7889999988888 9 99999999 889999999999999999999875 357899999999889
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccc-eEEE--ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCc
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQ-KIIE--EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~q-Kiie--eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~ 358 (2267)
|++|.+++|.+|+++.+.. ++++|+ .+.. ..|++.++++..+++++.+.++++++||+|+++|||++++ +|+
T Consensus 220 Eisv~v~~~~~G~~~~~~~----~e~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG~ 294 (419)
T 4e4t_A 220 EVSALIARGADGRSAAFPL----AQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DGS 294 (419)
T ss_dssp EEEEEEEECTTSCEEECCC----EEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TCC
T ss_pred EEEEEEEEcCCCCEEEEeC----eEEEeeCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CCC
Confidence 9999999999998877642 333333 3443 5688778999999999999999999999999999999984 678
Q ss_pred EEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000092 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2267)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2267)
+||+|||||+++++++++..+|+|+++++++.++|.|++.+ . ..
T Consensus 295 ~~v~EiNpR~~~sg~~t~~~~~~s~~~~~~ra~~G~pl~~~---------------------------------~---~~ 338 (419)
T 4e4t_A 295 FVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNP---------------------------------R---QH 338 (419)
T ss_dssp EEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCC---------------------------------C---BC
T ss_pred EEEEEEeCCCCCCCCeEeeccCCCHHHHHHHHHcCCCCCCc---------------------------------c---cc
Confidence 99999999999999999999999999999999999998631 0 01
Q ss_pred eEEEEEEEccCC-CCCC--CCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhc
Q 000092 439 GHCVAVRVTSED-PDDG--FKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515 (2267)
Q Consensus 439 Ghai~aRI~aEd-p~~~--F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~ 515 (2267)
..++.+.+..+. +... -.+....+.. +-..|++.+...-++.. .-...+|||.+.|+|.++|++++..+.+
T Consensus 339 ~~~~m~n~lg~~~~~~~~~~~~~~~~~~~--~l~~p~~~~~~ygk~~~----~~~rkmGhv~~~~~~~~~~~~~a~~~~~ 412 (419)
T 4e4t_A 339 SPAAMLNILGDVWFPNGAAAGAVTPPWDT--VAAMPAAHLHLYGKEEA----RVGRKMGHVNFTAEMRDDAVAAATACAQ 412 (419)
T ss_dssp SCEEEEEEEGGGGCTTCGGGCCCCCCHHH--HHTSTTEEEEECCCSCC----CTTCEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCccccccccccccchHHHH--HHhCCCCEEEECCCCCC----CCCCceEEEEEEeCCHHHHHHHHHHHHH
Confidence 124445555431 1000 0011111111 22345665443322211 1123489999999999999999999988
Q ss_pred ceEE
Q 000092 516 EIQI 519 (2267)
Q Consensus 516 el~I 519 (2267)
.+.|
T Consensus 413 ~l~~ 416 (419)
T 4e4t_A 413 LLRV 416 (419)
T ss_dssp HHTC
T ss_pred hcCc
Confidence 7755
No 33
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=1.1e-38 Score=399.63 Aligned_cols=371 Identities=14% Similarity=0.141 Sum_probs=300.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc--EEEEccCCCCCCCccCHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD--QFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~AD--e~v~vp~~~~~~~Y~dvd~Il 124 (2267)
+.+||||+|+|+.+.+++++++++|++++ ++ | .++++..++|| ..+.. +|.|.+.|.
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~-----------~~--d-~~~~p~~~~ad~~~~~~~-------~~~d~~~l~ 81 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVN-----------VL--D-ADNSPAKQISAHDGHVTG-------SFKEREAVR 81 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEE-----------EE--E-STTCTTGGGCCSSCCEES-------CTTCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--E-CCCCcHHHhccccceeec-------CCCCHHHHH
Confidence 46899999999999999999999999985 44 4 47788899999 44433 688999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
+++++ +|+|.+++.+. +..+.+.|++ |+. +||++++++.+.||..+|++++++|||+|||..
T Consensus 82 ~~a~~--~d~i~~e~e~~--~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~------------ 143 (403)
T 3k5i_A 82 QLAKT--CDVVTAEIEHV--DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRE------------ 143 (403)
T ss_dssp HHHTT--CSEEEESSSCS--CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEE------------
T ss_pred HHHHh--CCEEEECCCCC--CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEE------------
Confidence 99986 69998775544 4456788888 987 899999999999999999999999999999876
Q ss_pred ccCcccccccccC--CHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 205 TIPDDVYRQACVY--TTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 205 ~v~~~~~~~~~V~--s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
+. +.+++.++++++|||+||||..|+ ||+|+++|++.+|+.++++.+. +.+++||+|+++++
T Consensus 144 -----------~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~i~~~~ 208 (403)
T 3k5i_A 144 -----------LVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK----DRPLYAEKWAYFKM 208 (403)
T ss_dssp -----------ESSCCHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTT----TSCEEEEECCCEEE
T ss_pred -----------EcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcC----CCcEEEecCCCCCe
Confidence 55 899999999999999999999998 9999999999999999998753 56899999999779
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|++|.+++|..| +..++..+.+++.+.+.....|++.++++..+++.+.+.++++++||+|.++|||++++ +|++||
T Consensus 209 E~sv~v~~~~~g--~~~~p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg~~~v 285 (403)
T 3k5i_A 209 ELAVIVVKTKDE--VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLE-DDSIML 285 (403)
T ss_dssp EEEEEEEECSSC--EEECCCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TSCEEE
T ss_pred EEEEEEEEcCCC--EEEeCCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCcEEE
Confidence 999999999888 55677778888888877778898878999999999999999999999999999999984 678999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
+|+|||++++..++...+|+|+.+++++.++|.|++.. .....+++
T Consensus 286 ~EiNpR~~~sg~~~~~~~~~s~~~~~~ra~~G~pl~~~----------------------------------~~~~~~~a 331 (403)
T 3k5i_A 286 CEIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIPAQ----------------------------------SLEIRQPS 331 (403)
T ss_dssp EEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCGG----------------------------------GGSBSSCE
T ss_pred EEeecCCCCCCceeeeecCCCHHHHHHHHHcCCCCCcc----------------------------------cccCCCcE
Confidence 99999999864444456899999999999999998631 01123457
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2267)
+.+.+..++.. .+....+.. +-..|++.+...-++..+ -...+|||.+.|+|.++|++++.++++.+
T Consensus 332 ~m~nilg~~~~---~~~~~~~~~--~~~~p~~~~~~ygk~~~~----~~rkmGhv~~~~~~~~~~~~~a~~~~~~~ 398 (403)
T 3k5i_A 332 IMLNIIGGAAP---DTHLQAAEC--ALSIPNASIHLYSKGAAK----PGRKMGHITVTAPTMHEAETHIQPLIDVV 398 (403)
T ss_dssp EEEEEECCSSS---SHHHHHHHH--HTTSTTEEEEECCCCSCC----TTCEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCcc---ccchhHHHH--HhcCCCCEEEECCCCCCC----CCCeeEEEEEEcCCHHHHHHHHHHHHhhh
Confidence 77777775421 010001111 223466644432221111 12458999999999999999999998765
No 34
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-37 Score=385.44 Aligned_cols=368 Identities=15% Similarity=0.177 Sum_probs=284.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
|+||||+|+|..+..++++++++|++++ ++ |.+++.+..+++|+++.+ +|.|.+.+.+++
T Consensus 1 M~~Ililg~g~~g~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~-------~~~d~~~l~~~~ 60 (380)
T 3ax6_A 1 MKKIGIIGGGQLGKMMTLEAKKMGFYVI-----------VL--DPTPRSPAGQVADEQIVA-------GFFDSERIEDLV 60 (380)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCTTGGGSSEEEEC-------CTTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhCceEEEC-------CCCCHHHHHHHH
Confidence 5899999999999999999999999875 34 333455667899998876 357789999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
.++|+|+++++... ..+.+.|++.|++ +||+++++..++||..++++++++|||+|+|..
T Consensus 61 --~~~d~v~~~~e~~~--~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--------------- 120 (380)
T 3ax6_A 61 --KGSDVTTYDLEHID--VQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKL--------------- 120 (380)
T ss_dssp --HTCSEEEESCSCSC--HHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred --hcCCEEEecccCCC--HHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEE---------------
Confidence 57999999876543 3456788889998 689999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
+++.++ +++++|||+||||..|+ ||+|+++|++.+|+.++++ .+++||+|+++++|++|.
T Consensus 121 --------~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~--------~~~lvEe~i~~g~e~sv~ 181 (380)
T 3ax6_A 121 --------VKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK--------GETYLEEFVEIEKELAVM 181 (380)
T ss_dssp --------CSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC--------SSEEEEECCCEEEEEEEE
T ss_pred --------eCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc--------CCEEEEeccCCCeeEEEE
Confidence 567766 66789999999999999 9999999999999877654 589999999966899999
Q ss_pred EEEcCCCCEEEeccccccc--ccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeee
Q 000092 287 LLCDQYGNVAALHSRDCSV--QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsv--qrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2267)
+++|++|++..+... +.. ++.+.......|+. ++++..+++.+.+.++++++||.|.+++||++++ +|++||+|+
T Consensus 182 ~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g~~~viEi 258 (380)
T 3ax6_A 182 VARNEKGEIACYPVV-EMYFDEDANICDTVIAPAR-IEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QGEILVNEI 258 (380)
T ss_dssp EEECSSCCEEEEEEE-EEC--------CEEEESCS-SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSCEEEEEE
T ss_pred EEECCCCCEEEECCe-eeeecccCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEe
Confidence 999988887654322 222 33333333456877 8899999999999999999999999999999994 678999999
Q ss_pred CccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000092 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2267)
Q Consensus 365 NpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~a 444 (2267)
|||+++++..+.+.+|+|+...+++.++|.+++..+ . .++++.+
T Consensus 259 N~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~----------------------------------~--~~~~~~~ 302 (380)
T 3ax6_A 259 APRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGSTE----------------------------------L--LIPAVMV 302 (380)
T ss_dssp ESSCCGGGTHHHHHBSSCHHHHHHHHHTTCCCCCCC----------------------------------B--CSCEEEE
T ss_pred cCCCCCCceeehhhccccHHHHHHHHHhCCCCCCcc----------------------------------c--cCceEEE
Confidence 999999888888899999999999999999886310 0 1224567
Q ss_pred EEccCCCCCCCCC-CCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 445 RVTSEDPDDGFKP-TSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 445 RI~aEdp~~~F~P-s~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
++.+++...+..+ ..| +..+ ..|++.++. .|.... .....+|||++.|+|+++|++++.++++.+.++-
T Consensus 303 ~~l~~~~~~~~~~~~~~-~~~~---~~p~~~~~~---~g~~~~-~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 372 (380)
T 3ax6_A 303 NLLGEEGYYGKPALIGL-EEAL---AIEGLSLHF---YGKKET-RPYRKMGHFTVVDRDVERALEKALRAKKILKVVS 372 (380)
T ss_dssp EEEBCTTCCBSEEEESH-HHHH---TSTTEEEEE---CCCSCB-CBTCEEEEEEEECSSHHHHHHHHHHHTTTCEEEE
T ss_pred EEecccccccccccchh-HHHh---cCCCCEEEe---cCCCCC-CCCCeeEEEEEEeCCHHHHHHHHHHHHhhhhhhc
Confidence 7777653211112 233 4443 335654433 122221 2345699999999999999999999999999875
No 35
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=100.00 E-value=9.5e-37 Score=383.94 Aligned_cols=376 Identities=18% Similarity=0.232 Sum_probs=285.0
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+|.....+++++ +++|++++ + +.+. +......+| .+.+ +|.|.+.|+++|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~~~~-------~~~d~~~l~~~~~ 59 (424)
T 2yw2_A 2 KVLVVGNGGREHAIAWKVAQSPLVKEL---------Y-VAKG----NAGIWEIAK-RVDI-------SPTDVEKLAEFAK 59 (424)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTCSEE---------E-EEEC----CTTGGGTSE-EECS-------CTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhhCCCCCEE---------E-EECC----Ccchhhhcc-cccC-------CcCCHHHHHHHHH
Confidence 799999995444444443 56787764 1 2221 333445565 3322 5678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++|+|+||.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (424)
T 2yw2_A 60 NEGVDFTIVGPEAPL-VEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEV---------------- 122 (424)
T ss_dssp HHTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEE----------------
T ss_pred HcCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999999843211 124678888999999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhie 284 (2267)
+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~s 194 (424)
T 2yw2_A 123 -------FTDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEAS 194 (424)
T ss_dssp -------ESCHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEE
T ss_pred -------ECCHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEE
Confidence 778999999999999999999999999999999999999999999887532 1368999999996 7999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHH-HHHHHHHHHHc-----Cceeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVGAA 346 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL-~~~A~rla~aL-----Gy~Ga~ 346 (2267)
|.++.| |+.+... ..+++|+++.+ ..|++.+++++.+++ ++.+.++++++ +|.|++
T Consensus 195 v~~~~~--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (424)
T 2yw2_A 195 YIVMIN--GDRYVPL----PTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFL 268 (424)
T ss_dssp EEEEEE--TTEEEEC----CCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEEc--CCEEEee----cceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 999986 4544432 34566666653 267766889888888 46787777765 889999
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2267)
++||++++ +| +||+|+|||+++.. ...+..+|+|+++++++++.|. ++.+
T Consensus 269 ~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~-------------------------- 319 (424)
T 2yw2_A 269 YAGLMITK-EG-PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK-DVHI-------------------------- 319 (424)
T ss_dssp EEEEEEET-TE-EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC-CCCC--------------------------
T ss_pred EEEEEEeC-CC-cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcc--------------------------
Confidence 99999994 44 99999999998553 3345568999999999999985 3310
Q ss_pred CCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccc-cCCCcEEEEEeeeeCCcc----cccCCcccEEEEEE
Q 000092 426 PFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSF-KSKPNVWAYFSVKSGGGI----HEFSDSQFGHVFAF 499 (2267)
Q Consensus 426 ~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~-i~~l~~-~s~~~V~~~~~v~~G~~i----~~~~Ds~~g~via~ 499 (2267)
. ...+|++.++++++++.. .|..|. +..+.. ...|+++++. .|..+ .......+|||+++
T Consensus 320 ~---------~~~~~a~~~~~~~~g~~~--~~~~g~~i~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~r~~~v~~~ 385 (424)
T 2yw2_A 320 K---------EDERYALDVVLASRGYPE--KPETGKIIHGLDYLKSMEDVVVFH---AGTKKEGNFTVTSGGRVLNVCAY 385 (424)
T ss_dssp C---------BCSSEEEEEEEECTTTTS--SCCCCCBCBCHHHHHTSTTEEEEE---SSEEEETTEEEECSSEEEEEEEE
T ss_pred c---------ccCCcEEEEEEecCCCCC--CCCCCCcCcCcccccCCCCeEEEE---cceEeeCCEEEecCCcEEEEEEE
Confidence 0 113688999998875432 355565 554432 2246765432 23322 12234568999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000092 500 GESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2267)
|+|+++|++++.++++++.++|
T Consensus 386 g~~~~~a~~~~~~~~~~i~~~g 407 (424)
T 2yw2_A 386 GKTLKEAKERAYEAIRYVCFEG 407 (424)
T ss_dssp ESSHHHHHHHHHHHHTTCBCTT
T ss_pred eCCHHHHHHHHHHHHhcceeCC
Confidence 9999999999999999999999
No 36
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.7e-37 Score=396.08 Aligned_cols=376 Identities=15% Similarity=0.130 Sum_probs=305.9
Q ss_pred eeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCC--CchHHHHHHcCCe
Q 000092 81 ILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEI--PELPDTLSTKGII 158 (2267)
Q Consensus 81 i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn--~~la~~l~~~GI~ 158 (2267)
+++|+++...|.++.+++++.||+.+.+++......+..++.|+++|+++++|+|+|+ +|+ ..+++.+++.|++
T Consensus 52 ~~~Vav~~~~D~~~~~p~~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip~----sE~~l~~~a~~~e~~Gi~ 127 (474)
T 3vmm_A 52 KYSVAVIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTN----NELFIAPMAKACERLGLR 127 (474)
T ss_dssp HHEEEEEECGGGCSSGGGGCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEES----CGGGHHHHHHHHHHTTCC
T ss_pred ceEEEEEeCCCcccCCcchhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEC----CcccHHHHHHHHHHcCCC
Confidence 6789999988888888899999999988665555566779999999999999999995 565 5688999999987
Q ss_pred EeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeec
Q 000092 159 FLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKAS 238 (2267)
Q Consensus 159 fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs 238 (2267)
||+++++..++||..++++++++|||+|||.. +++.+++.++++++|||+||||+
T Consensus 128 --g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~-----------------------v~s~ee~~~~~~~lg~PvVVKP~ 182 (474)
T 3vmm_A 128 --GAGVQAAENARDKNKMRDAFNKAGVKSIKNKR-----------------------VTTLEDFRAALEEIGTPLILKPT 182 (474)
T ss_dssp --CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEE-----------------------ECSHHHHHHHHHHSCSSEEEEES
T ss_pred --CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999865 78899999999999999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHhh----------CCCCcEEEEEeccccce-----------eeEE-EEEcCCCCEE
Q 000092 239 WGGGGKGIRKVHNDDEVRALFKQVQGE----------VPGSPIFIMKVASQSRH-----------LEVQ-LLCDQYGNVA 296 (2267)
Q Consensus 239 ~GgGGkGIr~V~s~eEL~~a~~~~~~e----------~~~~~I~VEeyI~g~rh-----------ieVq-vl~D~~G~vi 296 (2267)
.|+||+|+++|++.+|+.++++.+..+ ..+.+++||+|++|.+| +++. ++.|+++.++
T Consensus 183 ~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v 262 (474)
T 3vmm_A 183 YLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPI 262 (474)
T ss_dssp SCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEE
T ss_pred CCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEE
Confidence 999999999999999999999988764 23578999999998764 7776 5677777778
Q ss_pred EecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeee-EEEEEEEccCCcEEEeeeCccCc--CCcc
Q 000092 297 ALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA-TVEYLYSMETGEYYFLELNPRLQ--VEHP 373 (2267)
Q Consensus 297 ~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~-tVEfl~d~~~g~~yfLEINpRlq--gehp 373 (2267)
.+..++|+.+ +++.++.+|++ ++++..++|.+.+.++++++||+|.+ |+||++++ +|++||||+|||++ .+|+
T Consensus 263 ~i~~~~~~~~--~~~~~~~~Pa~-l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg~~~~iEvNpR~~G~~~~~ 338 (474)
T 3vmm_A 263 AIHDKTPQIG--FTETSHITPSI-LDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NREPGLIESAARFAGWNMIP 338 (474)
T ss_dssp EEEEECCCBT--TBCCEEEESCC-CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GGEEEEEEEESSCCSTTHHH
T ss_pred EEEeeccCCC--ccceEEEECCC-CCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CCCEEEEEEeCCCCCCchHH
Confidence 8889999877 78888899995 89999999999999999999999888 59999995 67899999999999 5689
Q ss_pred eehhhhcCCHHHHHHHHHc-CCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCC
Q 000092 374 VTEWIAEINLPAAQVAVGM-GIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPD 452 (2267)
Q Consensus 374 vtE~vtGvDL~~~qL~iA~-G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~ 452 (2267)
++++++|+|++++++++++ |.+++..+ . ......+++.+|++.++.+.
T Consensus 339 ~~~~~tG~dl~~~~i~~a~~G~~l~~~~----------------------~---------~~~~~~~~~~~~~~~p~~~~ 387 (474)
T 3vmm_A 339 NIKKVFGLDMAQLLLDVLCFGKDADLPD----------------------G---------LLDQEPYYVADCHLYPQHFK 387 (474)
T ss_dssp HHHHHHCCCHHHHHHHHHHHGGGSCCCS----------------------S---------CCCCCSSEEEEEEECHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCCCCCc----------------------c---------cccCCCceeEEEEEeccccc
Confidence 9999999999999999999 99886321 0 11123477778888776543
Q ss_pred C-CCCC-CCC--ccccccccCCC----cEEEEEe-eeeC----CcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000092 453 D-GFKP-TSG--KVQELSFKSKP----NVWAYFS-VKSG----GGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2267)
Q Consensus 453 ~-~F~P-s~G--~i~~l~~~s~~----~V~~~~~-v~~G----~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2267)
. +-.| ..+ .|..+..|.+- .+.+..+ ...| -.+-.-|||.++-++ .|+++++..+.++..|+..++
T Consensus 388 ~~~~~p~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 466 (474)
T 3vmm_A 388 QNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFEL-KGSNSQDVAESIRQIQQHAKL 466 (474)
T ss_dssp HTTSSCTTCEEEEEEEEECCTTCCCTTCEEEEEEECCTTEEECTTSCGGGCCCEEEEE-EESCHHHHHHHHHHHHHHCEE
T ss_pred cccccCCcccceeecceecccceecccceEeeccCCCCCceEEEEeehhccCceeEEe-ccccHHHHHHHHHHHHHhhhh
Confidence 2 1122 222 24444444321 2222221 1112 234456899988887 999999999999999999888
Q ss_pred ec
Q 000092 520 RG 521 (2267)
Q Consensus 520 ~G 521 (2267)
..
T Consensus 467 ~~ 468 (474)
T 3vmm_A 467 TA 468 (474)
T ss_dssp EE
T ss_pred hh
Confidence 65
No 37
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=3.3e-36 Score=378.37 Aligned_cols=374 Identities=17% Similarity=0.254 Sum_probs=284.2
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+|.....+++++ +++|++++ ++.+. +......++ . ++ +|.|.+.|+++|+
T Consensus 2 kililG~g~r~~a~a~~l~~~~g~~~v----------~~~~~----~~~~~~~~~-~--~~------~~~d~~~l~~~~~ 58 (417)
T 2ip4_A 2 KVLVVGSGGREHALLWKAAQSPRVKRL----------YAAPG----NAGMEALAE-L--VP------WNGDVEALADWAL 58 (417)
T ss_dssp EEEEEESSHHHHHHHHHHHTCSSCCEE----------EEEEC----CTTGGGTSE-E--CC------CCSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE----------EEECC----Ccchhhhcc-c--CC------CccCHHHHHHHHH
Confidence 799999996566666666 45787764 12221 222333344 3 32 4678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 59 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~---------------- 121 (417)
T 2ip4_A 59 AEGIDLTLVGPEAPL-VEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRV---------------- 121 (417)
T ss_dssp HHTCCEEEECSSHHH-HTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEE----------------
T ss_pred HcCCCEEEECCchHH-HHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeee----------------
Confidence 999999999854321 124678888899999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.....+.+++||+|++| +|++|.++
T Consensus 122 -------~~~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~ 193 (417)
T 2ip4_A 122 -------FREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLAL 193 (417)
T ss_dssp -------ESSHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEE
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEE
Confidence 7789999999999999999999999999999999999999999988863333578999999986 79999999
Q ss_pred EcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHH-HHHHHHHHHHc-----CceeeeEEEE
Q 000092 289 CDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVGAATVEY 350 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL-~~~A~rla~aL-----Gy~Ga~tVEf 350 (2267)
.| |+.+..+ .++++|++..+ ..|++ +++++.+++ ++.+.++++++ +|.|++++||
T Consensus 194 ~~--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~ 266 (417)
T 2ip4_A 194 TD--GETILPL----LPSQDHKRLLDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGL 266 (417)
T ss_dssp ES--SSCEEEC----CCBEECCEEETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred Ee--CCEEEEc----chheechhhccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 86 4444332 23455555432 36777 888888888 66787888775 8899999999
Q ss_pred EEEccCCcEEEeeeCccCcCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCc
Q 000092 351 LYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429 (2267)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgeh-pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~ 429 (2267)
++++ +| +||+|+|||+++.. ...+..+|+|+++++++++.|. ++. ..+.|
T Consensus 267 ~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~------------------------~~~~~-- 317 (417)
T 2ip4_A 267 MLTR-EG-PKVLEFNARFGDPEAQALLPLLENDLVELALRVAEGR-LAG------------------------TRLSW-- 317 (417)
T ss_dssp EECS-SC-EEEEEEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC-GGG------------------------CCCCB--
T ss_pred EEeC-CC-eEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCc------------------------CCccc--
Confidence 9984 55 99999999998653 2344568999999999999985 321 01111
Q ss_pred cccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccccCCCcEEEEEeeeeCCccc----ccCCcccEEEEEEeCCHH
Q 000092 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSFKSKPNVWAYFSVKSGGGIH----EFSDSQFGHVFAFGESRA 504 (2267)
Q Consensus 430 ~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~-i~~l~~~s~~~V~~~~~v~~G~~i~----~~~Ds~~g~via~G~~re 504 (2267)
..++++.+++.++++.. .|..|. |..+... |+++++. .|..+. .....++|||+++|+|++
T Consensus 318 -------~~~~~~~~~l~~~~~~~--~~~~g~~i~~~~~~--~~v~~~~---~g~~~~~~~~~~~~~rv~~v~~~g~~~~ 383 (417)
T 2ip4_A 318 -------KEGAAACVVLAAPGYPE--SPRKGIPLHVPEPP--EGVLVFH---AGTRREGGRLVSAGGRVLNVVGLGRDLK 383 (417)
T ss_dssp -------CSSEEEEEEEECTTTTT--SCCCCCBCBCCCCC--TTEEEEE---SSEEESSSSEEECSSEEEEEEEEESSHH
T ss_pred -------cCCcEEEEEEeCCCCCC--CCCCCCcccccCCC--CCeEEEE---CceEeeCCeEEecCCcEEEEEEEcCCHH
Confidence 12688999998876432 466776 6555432 6765442 333321 122345899999999999
Q ss_pred HHHHHHHHhhcceEEec
Q 000092 505 LAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 505 eA~~~l~~AL~el~I~G 521 (2267)
+|++++.++++.+.++|
T Consensus 384 ~a~~~~~~~~~~i~~~~ 400 (417)
T 2ip4_A 384 EALERAYAYIPQVGFPG 400 (417)
T ss_dssp HHHHHHHHHGGGSBCTT
T ss_pred HHHHHHHHHHhcCccCC
Confidence 99999999999999998
No 38
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=1.1e-36 Score=375.00 Aligned_cols=337 Identities=14% Similarity=0.118 Sum_probs=268.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
||||+|+|+|+.+.+++.+++++||+++ .. | ++++. +.+ +
T Consensus 1 Mk~igilGgGqlg~m~~~aa~~lG~~v~-----------~~--~--~~a~~-------~~~----------~-------- 40 (355)
T 3eth_A 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVW-----------PV--G--LDAEP-------AAV----------P-------- 40 (355)
T ss_dssp CCEEEEESCSHHHHHHHHHHGGGTCEEE-----------EE--C--TTCCG-------GGC----------C--------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------CC--C--CCCCc-------eEE----------c--------
Confidence 6889999999999999999999999874 22 2 33332 011 1
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
.++|+|+|++++.+.+ +.+.|++.| ++||+++++..++||..+|++++++|||+|||..
T Consensus 41 --l~~d~it~e~e~v~~~--~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~--------------- 99 (355)
T 3eth_A 41 --FQQSVITAEIERWPET--ALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQL--------------- 99 (355)
T ss_dssp --CTTSEEEESCSCCCCC--HHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred --ccCCEEEECcCCcCHH--HHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEE---------------
Confidence 1899999999988754 788898887 7899999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCC-CCCcCeEEECC--HHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWG-GGGKGIRKVHN--DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~G-gGGkGIr~V~s--~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhie 284 (2267)
+++.+++.++++++|||+||||+.| +||+|+++|++ .+|+.+++ . + +++||+|+++++|++
T Consensus 100 --------v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~---~----~-~vivEe~I~~~~Eis 163 (355)
T 3eth_A 100 --------LAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC---Y----G-ECIVEQGINFSGEVS 163 (355)
T ss_dssp --------ECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG---T----T-TEEEEECCCCSEEEE
T ss_pred --------ECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh---h----C-CEEEEEccCCCcEEE
Confidence 6788899999999999999999985 78999999999 99988743 1 2 699999999889999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2267)
|.+++|.+|++.++... +.+++.+.......|+ .+++++.+++++.|.++++++||+|+++|||+++ ++++||+|+
T Consensus 164 v~v~~~~~G~~~~~p~~-e~~~~~g~~~~~~~pa-~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~--~~~~~v~Ei 239 (355)
T 3eth_A 164 LVGARGFDGSTVFYPLT-HNLHQDGILRTSVAFP-QANAQQQARAEEMLSAIMQELGYVGVMAMECFVT--PQGLLINEL 239 (355)
T ss_dssp EEEEECTTSCEEECCCE-EEEEETTEEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEE
T ss_pred EEEEEcCCCCEEEECCE-EEEeeCCeEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEe
Confidence 99999999998765332 3455555433334455 5899999999999999999999999999999999 578999999
Q ss_pred CccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000092 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2267)
Q Consensus 365 NpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~a 444 (2267)
|||+++++++|+..+|+|+.+.+++.++|.|++.+ ...++++.+
T Consensus 240 npR~~~sg~~t~~~~~~s~fe~~~ra~~G~pl~~~------------------------------------~~~~~~~m~ 283 (355)
T 3eth_A 240 APRVHNSGHWTQNGASISQFELHLRAITDLPLPQP------------------------------------VVNNPSVMI 283 (355)
T ss_dssp ESSCCGGGTTHHHHSSSCHHHHHHHHHTTCCCCCC------------------------------------CCCSCEEEE
T ss_pred eCCCCCCccEEeeeecCCHHHHHHHHHcCCCCCCc------------------------------------cccCceEEE
Confidence 99999999999999999999999999999998631 112346666
Q ss_pred EEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 445 RVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 445 RI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
.|..++ + ... +-..|++.+.+. |... .-...+|||.+.|+|.++|++++..+.+.+.
T Consensus 284 nilg~~---------~-~~~--~~~~p~~~~~~y---gk~~--r~~rkmGhv~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
T 3eth_A 284 NLIGSD---------V-NYD--WLKLPLVHLHWY---DKEV--RPGRKVGHLNLTDSDTSRLTATLEALIPLLP 340 (355)
T ss_dssp EEESCC---------C-CGG--GGGSTTCEEEEC---CCCC--CTTCEEEEEEEECSCHHHHHHHHHHHGGGSC
T ss_pred EEecch---------H-HHH--HHhCCCCEEEEc---CCCC--CCCCeeEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 776653 1 111 122344433321 1111 1234599999999999999999999888753
No 39
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=8.4e-37 Score=376.96 Aligned_cols=358 Identities=18% Similarity=0.184 Sum_probs=239.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
|+||||+|+|..+..++++++++|++++ ++ |.+.+.+..+++|+++..| .+.+++
T Consensus 1 M~~Ililg~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~~------------~l~~~~ 55 (365)
T 2z04_A 1 MLTVGILGGGQLGWMTILEGRKLGFKFH-----------VL--EDKENAPACRVADRCFRTG------------QISEFV 55 (365)
T ss_dssp -CEEEEECCSHHHHHHHHHHGGGTCEEE-----------EE--CSSSSCHHHHHSSEEECGG------------GHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhccceeeHH------------HHHHHh
Confidence 5899999999999999999999999985 44 4445667888999987653 577777
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
.++|+|+++++.... .+.+.++. ++||+++++..++||..++++++++|||+|+|..
T Consensus 56 --~~~d~v~~~~e~~~~--~~~~~l~~----~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--------------- 112 (365)
T 2z04_A 56 --DSCDIITYEFEHIKD--EVLEKCES----KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLV--------------- 112 (365)
T ss_dssp --HHCSEEEESSSCCCH--HHHHHHTT----TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEE---------------
T ss_pred --hcCCEEEECCCCCcH--HHHHHHhh----hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEE---------------
Confidence 568999998643221 13444432 7899999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
++ .+++.++++++|||+|+||..|+ ||+|+++|++.+|+.++++.+.. +.+++||+|+++++|++|+
T Consensus 113 --------~~-~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~---~~~~lvEe~i~~g~e~sv~ 180 (365)
T 2z04_A 113 --------IK-RDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK---EESFIIEEFVKFEAEISCI 180 (365)
T ss_dssp --------C---------------CEEEECC---------------------------------CEEEECCCCSEEEEEE
T ss_pred --------Ec-HHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhcc---CCCEEEEccCCCCEEEEEE
Confidence 55 67777888889999999999999 99999999999999999887642 4689999999966899999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
+++|++|+++.+...++ .++.+.......|++. .+++.+.+.++++++||+|.+++||++++ +|++||+|+||
T Consensus 181 ~~~d~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g~~~~iEiN~ 253 (365)
T 2z04_A 181 GVRDREGKTYFYPQPFN-KHEEGILIYNYVPYAK-----LKEAEEITKRLMELLDIVGVFTVEFFLLK-DGRVLINEFAP 253 (365)
T ss_dssp EEECTTCCEEECCEEEE-EEETTEEEEEEEEEEC-----CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEES
T ss_pred EEECCCCCEEEECCEEE-EEeCCEeEEEECCHhH-----HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CCcEEEEEecc
Confidence 99998898877655443 3333333334556542 56799999999999999999999999984 67799999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
|+++....+...+|+|+...+++.++|.+++.. . . .++++.+++
T Consensus 254 R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---------------------------------~-~--~~~~~~~~~ 297 (365)
T 2z04_A 254 RVHNTGHWTLDGAYTSQFENLLRAITEMPLGST---------------------------------E-L--KLPSGMVNI 297 (365)
T ss_dssp SCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCC---------------------------------C-B--SSCEEEEEE
T ss_pred CcCCCceEEeeccccCHHHHHHHHHhCCCCCCc---------------------------------c-c--cCCEEEEEE
Confidence 999743336778999999999999999988631 0 0 123567888
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
.++++ .| +.+..+ ...|++.+... |. ....+..+|||+++|+|+++|++++.++++.+.++|
T Consensus 298 ~~~~~----~~--~~~~~~--~~~~~~~~~~~---g~--~~~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 359 (365)
T 2z04_A 298 LGKSY----EE--IPLKEI--LSVEGAKLYWY---GK--EKKPRRKVGHVNVVGRSKEEVVEKVERVFTLLKGSR 359 (365)
T ss_dssp ESCCG----GG--SCHHHH--TTSTTEEEEEC---CC--CCCTTCEEEEEEEECSSHHHHHHHHHHHHHC-----
T ss_pred ECCcc----cc--chHHHH--hcCCCCEEEec---CC--CCCCCCeEEEEEEecCCHHHHHHHHHHHHHHhhhcc
Confidence 87652 13 444433 23456533221 33 223367799999999999999999999999999999
No 40
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=384.71 Aligned_cols=382 Identities=16% Similarity=0.220 Sum_probs=279.9
Q ss_pred CccEEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
|.+||||+|+|.....+++.+ +++|++++ ++ .+ + ...+. ..++ ...++. +|.|.+.|++
T Consensus 23 m~~~IlIlG~g~r~~al~~~~a~~~g~~~v---------~~-~~-~--~~~~~-~~~~-~~~~~~-----~~~d~~~l~~ 82 (452)
T 2qk4_A 23 MAARVLIIGSGGREHTLAWKLAQSHHVKQV---------LV-AP-G--NAGTA-CSEK-ISNTAI-----SISDHTALAQ 82 (452)
T ss_dssp CSEEEEEEECSHHHHHHHHHHTTCTTEEEE---------EE-EE-C--CGGGS-BSSS-EEECCC-----CSSCHHHHHH
T ss_pred cCcEEEEECCCHHHHHHHHHHHhcCCCCEE---------EE-EC-C--Chhhh-hhcc-cccccc-----CCCCHHHHHH
Confidence 568999999997655555554 56676643 22 22 1 22222 3344 333432 5788999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|++.++|+|+|+.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 83 ~~~~~~~d~V~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 148 (452)
T 2qk4_A 83 FCKEKKIEFVVVGPEAPL-AAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKA------------- 148 (452)
T ss_dssp HHHHHTCCEEEECSSHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEE-------------
T ss_pred HHHHcCCCEEEECCcHHH-HHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE-------------
Confidence 999999999999843211 125678888899999999999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~ 280 (2267)
+++.+++.++++++||| +||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++|
T Consensus 149 ----------~~~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G- 217 (452)
T 2qk4_A 149 ----------FTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG- 217 (452)
T ss_dssp ----------ESSHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-
T ss_pred ----------ECCHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-
Confidence 77899999999999999 9999999999999999999999999998876421 1468999999995
Q ss_pred ceeeEEEEEcCCCC-EEEecccccccccccceEE------------EecCCCCCCHHHHHHHH-HHHHHHHHHc-----C
Q 000092 281 RHLEVQLLCDQYGN-VAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKLE-QAARRLAKCV-----N 341 (2267)
Q Consensus 281 rhieVqvl~D~~G~-vi~l~~Rdcsvqrr~qKii------------eeaPa~~l~~e~~~eL~-~~A~rla~aL-----G 341 (2267)
+|++|.++.| |+ ++.+. .++++++.. ...|++.+++++.+++. +.+.++++++ +
T Consensus 218 ~E~sv~~~~d--G~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~ 290 (452)
T 2qk4_A 218 EEVSCLCFTD--GKTVAPMP-----PAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTP 290 (452)
T ss_dssp EEEEEEEEEC--SSCEEECC-----CBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCC
T ss_pred CeEEEEEEEC--CCEEEEcc-----eeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999986 44 44432 233444432 23677768888888886 6777777765 6
Q ss_pred ceeeeEEEEEEEccCCcEEEeeeCccCcCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccc
Q 000092 342 YVGAATVEYLYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420 (2267)
Q Consensus 342 y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehp-vtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~ 420 (2267)
|+|++++||++++ +| +||+|+|||+++... .....+|+|+++++++++.|. ++..
T Consensus 291 ~~G~~~ve~~~~~-~g-~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~--------------------- 346 (452)
T 2qk4_A 291 YTGILYAGIMLTK-NG-PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLDGL-LCTS--------------------- 346 (452)
T ss_dssp CCEEEEEEEEEET-TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-GGGG---------------------
T ss_pred ceeEEEEEEEEeC-CC-cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcc---------------------
Confidence 7899999999993 45 999999999996542 244567999999999999885 3310
Q ss_pred cccccCCCccccCCCCCceE-EEEEEEccCCCCCCCCCCCC-ccccccccCCCcEEEEEeeeeCCccc----ccCCcccE
Q 000092 421 SVIATPFDFDQAESTRPKGH-CVAVRVTSEDPDDGFKPTSG-KVQELSFKSKPNVWAYFSVKSGGGIH----EFSDSQFG 494 (2267)
Q Consensus 421 ~~~~i~f~~~~~~~~~~~Gh-ai~aRI~aEdp~~~F~Ps~G-~i~~l~~~s~~~V~~~~~v~~G~~i~----~~~Ds~~g 494 (2267)
.+.| ..++ ++.++++++++.. .|..| .|..+.....|+++++. .|..+. ......+|
T Consensus 347 ---~~~~---------~~~~~a~~~~l~~~g~~~--~~~~g~~i~~l~~~~~~~v~~~~---~G~~~~~~~~~~~~~rv~ 409 (452)
T 2qk4_A 347 ---LPVW---------LENHTALTVVMASKGYPG--DYTKGVEITGFPEAQALGLEVFH---AGTALKNGKVVTHGGRVL 409 (452)
T ss_dssp ---CCCB---------CTTCEEEEEEEECTTTTS--SCCCSCBCBCHHHHHHTTCEEEE---SSEEEETTEEEECSSEEE
T ss_pred ---ccee---------cCCCcEEEEEEECCCCCC--CCCCCCcccCccccCCCCcEEEE---CcEEeeCCeEEecCCeEE
Confidence 0111 1244 8899999876433 45667 46555322335665432 333321 12345579
Q ss_pred EEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 495 HVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 495 ~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
||+++|+|+++|++++.++++.+.++|
T Consensus 410 ~v~~~g~~~~~a~~~~~~~~~~i~~~g 436 (452)
T 2qk4_A 410 AVTAIRENLISALEEAKKGLAAIKFEG 436 (452)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHCBCTT
T ss_pred EEEEecCCHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999998
No 41
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=5.2e-36 Score=373.58 Aligned_cols=296 Identities=19% Similarity=0.212 Sum_probs=256.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+.+||+|+|+|.++..++++++++|++++ ++ |.++++++.++||+.+.. +|.|.+.+.++
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi-----------~~--d~~~~~~~~~~ad~~~~~-------~~~d~~~l~~~ 72 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYKIA-----------VL--DPTKNSPCAQVADIEIVA-------SYDDLKAIQHL 72 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCTTTTTCSEEEEC-------CTTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchHHhCCceEec-------CcCCHHHHHHH
Confidence 34799999999999999999999999986 44 556778889999998875 67889999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
+++ +|+|.+++ ...+..+.+.|++.|+ +||+++++..+.||..++++++++|||+|+|..
T Consensus 73 ~~~--~dvI~~~~--e~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 132 (389)
T 3q2o_A 73 AEI--SDVVTYEF--ENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRL-------------- 132 (389)
T ss_dssp HHT--CSEEEESC--CCCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEE--------------
T ss_pred HHh--CCEeeecc--ccccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE--------------
Confidence 976 68887654 4455567788888885 899999999999999999999999999999876
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCC-CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeE
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG-GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG-GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieV 285 (2267)
+.+.+++.++++++|||+|+||+.|++ |+|+++|++.+|+.++++.+. +.+++||+|+++.+|++|
T Consensus 133 ---------~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~g~~E~~v 199 (389)
T 3q2o_A 133 ---------VQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN----AAECILEKWVPFEKEVSV 199 (389)
T ss_dssp ---------ESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH----HSCEEEEECCCCSEEEEE
T ss_pred ---------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecccCceEEEE
Confidence 788999999999999999999999975 899999999999999998764 458999999998899999
Q ss_pred EEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeC
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELN 365 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEIN 365 (2267)
.+++|.+|+++.+...++ +++.+.......|+. ++++..+++.+.+.++++++||+|+++|||++++ +|++||+|+|
T Consensus 200 ~~~~~~~G~~~~~~~~e~-~~~~g~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg~~~viEiN 276 (389)
T 3q2o_A 200 IVIRSVSGETKVFPVAEN-IHVNNILHESIVPAR-ITEELSQKAIAYAKVLADELELVGTLAVEMFATA-DGEIYINELA 276 (389)
T ss_dssp EEEECTTCCEEECCCEEE-EEETTEEEEEEESCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEE
T ss_pred EEEEcCCCCEEEecCeee-EEcCCceEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCCEEEEEee
Confidence 999998899877654432 233322223345665 8899999999999999999999999999999984 6789999999
Q ss_pred ccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 366 PRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 366 pRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
||++.+.+++..++|+|+.+.+++.++|.|++.
T Consensus 277 pR~~~s~~~~~~~~g~~~~~~~~r~~lg~~l~~ 309 (389)
T 3q2o_A 277 PRPHNSGHYTQDACETSQFGQHIRAICNLPLGE 309 (389)
T ss_dssp SSCCGGGTTHHHHBSSCHHHHHHHHHHTCCCCC
T ss_pred CCCCCchhHHHHHcCCCHHHHHHHHHcCCCCCC
Confidence 999999888999999999999999999999863
No 42
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=1.7e-35 Score=367.77 Aligned_cols=294 Identities=15% Similarity=0.239 Sum_probs=248.2
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.+.+||||+|+|..+..++++++++|++++ ++ |.++++++.+.||+++.. +|.|.+.+.+
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~vi-----------v~--d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~ 69 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVV-----------VL--DPSEDCPCRYVAHEFIQA-------KYDDEKALNQ 69 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESCTTCTTGGGSSEEEEC-------CTTCHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--ECCCCChhhhhCCEEEEC-------CCCCHHHHHH
Confidence 456899999999999999999999999986 44 556778899999998876 5788999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
++++ +|+|.+++. .........+++.+ .++|++++++.+.||..++++++++|||+|||..
T Consensus 70 ~~~~--~dvi~~~~E--~~~~~~l~~l~~~~--~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~------------- 130 (377)
T 3orq_A 70 LGQK--CDVITYEFE--NISAQQLKLLCEKY--NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFIS------------- 130 (377)
T ss_dssp HHHH--CSEEEESST--TSCHHHHHHHHHHS--CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEE-------------
T ss_pred HHHh--CCcceeccc--ccCHHHHHHHhhhc--CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE-------------
Confidence 9987 688876642 22222455666665 5789999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhie 284 (2267)
+.+.+++.++++++|||+|+||..|+ ||+|+++|++.+|+.++++.+. ..++++|+|+++.+|++
T Consensus 131 ----------~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~i~g~~E~s 196 (377)
T 3orq_A 131 ----------VKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE----TSECVAEKYLNIKKEVS 196 (377)
T ss_dssp ----------ECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT----TSCEEEEECCCEEEEEE
T ss_pred ----------ECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCcEEEEccCCCCEEEE
Confidence 67778898999999999999999998 9999999999999999998875 36899999999889999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2267)
|.++++.+|++..+...++ .++.+.......|+. +++ .+++.+.|.++++++||+|+++|||++++ +|++||+|+
T Consensus 197 v~~~~~~~g~~~~~~~~e~-~~~~g~~~~~~~Pa~-l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~v~Ei 271 (377)
T 3orq_A 197 LTVTRGNNNQITFFPLQEN-EHRNQILFKTIVPAR-IDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NNQLYVNEI 271 (377)
T ss_dssp EEEEECGGGCEEECCCEEE-EEETTEEEEEEESCS-SCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEET-TCCEEEEEE
T ss_pred EEEEEeCCCCEEEECCEeE-EEECCEEEEEECCCC-CCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEe
Confidence 9999888888877644432 222222223356775 555 78999999999999999999999999984 688999999
Q ss_pred CccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 365 NpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
|||++++..+|...+++|+.+.+++.++|.|++
T Consensus 272 npR~~~sg~~t~~~~~~s~f~~~~ra~~G~pl~ 304 (377)
T 3orq_A 272 APRPHNSGHYSIEACDYSQFDTHILAVTGQSLP 304 (377)
T ss_dssp ESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCC
T ss_pred eCCcCCCCcEeehhcCCCHHHHHHHHHcCCCCC
Confidence 999999888887889999999999999999986
No 43
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=2.6e-35 Score=370.19 Aligned_cols=370 Identities=18% Similarity=0.132 Sum_probs=274.2
Q ss_pred CccEEEEECchHHHHHHH-HHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFI-RSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iI-rsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
+.+||||+|+|..-..++ ..++++| +++ +++ +.+....+|+. + |.+.|++
T Consensus 14 ~~~~vlviG~Ggr~~a~a~~~a~~~g-~v~-----------~~~-----~np~~~~~d~~--i----------d~~~l~~ 64 (412)
T 1vkz_A 14 KAVRVHILGSGGREHAIGWAFAKQGY-EVH-----------FYP-----GNAGTKRDGTN--H----------PYEGEKT 64 (412)
T ss_dssp --CEEEEEECSHHHHHHHHHHHHTTC-EEE-----------EEE-----CCTTGGGTSEE--C----------CCCTHHH
T ss_pred ccCEEEEECCCHHHHHHHHHHHhCCC-CEE-----------EEC-----CChhhhccccc--C----------CHHHHHH
Confidence 345899999885444433 3457787 664 332 23566778876 2 3577999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|++.++|+|++| +|++.++..++..+. ++||+++++..++||..++++++++|||+|+|..
T Consensus 65 ~~~~~~~d~V~~~----~E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 126 (412)
T 1vkz_A 65 LKAIPEEDIVIPG----SEEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEV------------- 126 (412)
T ss_dssp HHTSCSSCEECCS----SGGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------------
T ss_pred HHHHcCCCEEEEC----CcHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE-------------
Confidence 9999999999996 455556677777777 8899999999999999999999999999999865
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CC--CcEEEEEeccccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PG--SPIFIMKVASQSR 281 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~--~~I~VEeyI~g~r 281 (2267)
+++.+++.++++++|||+||||+.|+||+|+++|+|.+|+.++++.+..+. .+ .+++||+|++| +
T Consensus 127 ----------~~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G-~ 195 (412)
T 1vkz_A 127 ----------AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-N 195 (412)
T ss_dssp ----------ESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-E
T ss_pred ----------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCcC-c
Confidence 778999999999999999999999999999999999999999999887542 12 38999999995 8
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccc---e-----EEEecCCCCCCHHHHHHHHHHHHHHHHHc-----CceeeeEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQ---K-----IIEEGPITVAPLETVKKLEQAARRLAKCV-----NYVGAATV 348 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~q---K-----iieeaPa~~l~~e~~~eL~~~A~rla~aL-----Gy~Ga~tV 348 (2267)
|++|++++|+ +.+......+..++.+. + .....|++ +++++.+++.+.+.++++++ +|+|++++
T Consensus 196 E~sv~~~~dg--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~v 272 (412)
T 1vkz_A 196 ELSAMAVVNG--RNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYL 272 (412)
T ss_dssp EEEEEEEEET--TEEEECCCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEEEEECC--CEEEEeeeeEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999974 43333332233333221 1 12457888 89999999999999999999 89999999
Q ss_pred EEEEEccCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCC
Q 000092 349 EYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPF 427 (2267)
Q Consensus 349 Efl~d~~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f 427 (2267)
||++++ +| +||||+|||+++. |+.++..+|+|+.+.++.++.|. ++.+ .+
T Consensus 273 e~~~~~-~g-~~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~~g~-l~~~--------------------------~~ 323 (412)
T 1vkz_A 273 GLMLHD-GD-PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGG-KMEP--------------------------VE 323 (412)
T ss_dssp EEEEET-TE-EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHTS-CCCC--------------------------CC
T ss_pred EEEEEC-CC-cEEEEEecCCCCCcceeehhhcCCCHHHHHHHHhcCC-Cccc--------------------------cc
Confidence 999994 44 9999999999964 56677779999999999999884 3210 01
Q ss_pred CccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCcccEEEEEEeCCHHHH
Q 000092 428 DFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHVFAFGESRALA 506 (2267)
Q Consensus 428 ~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~via~G~~reeA 506 (2267)
..++++ +++.++++. .+.|..|.+..+..+. .++. .+.. .++.+.. ..+++|||+++|+|+++|
T Consensus 324 ---------~~~~a~-~~~l~~~~~-~~~~~~g~~i~l~~~~--~v~~-~g~~~~~~~~~~-~~~~vg~v~~~g~~~~ea 388 (412)
T 1vkz_A 324 ---------PRGFAV-DVVLAARGY-PDAPEKGKEITLPEEG--LIFF-AGVAEKDGKLVT-NGGRVLHCMGTGETKEEA 388 (412)
T ss_dssp ---------CCSEEE-EEEEECTTT-TTSCCCCCBCBCCSSC--CEEE-SSEEEETTEEEE-CSSEEEEEEEEESSHHHH
T ss_pred ---------cCCeEE-EEEEecCCC-CCCCCCCCEeeeCCCC--cEEE-CcccccCCeEEe-CCCcEEEEEEeCCCHHHH
Confidence 124665 455554321 2346667643333321 3432 1221 2232333 356799999999999999
Q ss_pred HHHHHHhhcceEEec
Q 000092 507 IANMVLGLKEIQIRG 521 (2267)
Q Consensus 507 ~~~l~~AL~el~I~G 521 (2267)
++++.++++.+.++|
T Consensus 389 ~~~~~~~~~~i~~~g 403 (412)
T 1vkz_A 389 RRKAYELAEKVHFEG 403 (412)
T ss_dssp HHHHHHHHHHCBCTT
T ss_pred HHHHHHHhcceeeCC
Confidence 999999999999998
No 44
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=100.00 E-value=3.2e-34 Score=364.21 Aligned_cols=374 Identities=19% Similarity=0.219 Sum_probs=270.5
Q ss_pred ccEEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
.+||||+|+|.....+++++ +++|++++ + +.+. +......+| . ++. ++.|.+.|+++
T Consensus 21 ~~~iliiG~g~r~~a~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~~-----~~~d~~~l~~~ 78 (451)
T 2yrx_A 21 HMNVLVIGRGGREHAIAWKAAQSPLVGKL---------Y-VAPG----NPGIADVAE-L--VHI-----DELDIEALVQF 78 (451)
T ss_dssp SEEEEEEECSHHHHHHHHHHHTCTTEEEE---------E-EEEC----CTTGGGTSE-E--CCC-----CTTCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEE---------E-EECC----ChhhhhhCc-e--ecc-----CCCCHHHHHHH
Confidence 36899999996555555544 56777653 2 2222 223344454 3 322 46789999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 79 ~~~~~~d~vi~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 143 (451)
T 2yrx_A 79 AKQQAIDLTIVGPEAPL-ASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAA-------------- 143 (451)
T ss_dssp HHHTTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE--------------
T ss_pred HHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEE--------------
Confidence 99999999999854321 134678888899999999999999999999999999999999999875
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|
T Consensus 144 ---------~~~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E 213 (451)
T 2yrx_A 144 ---------FTSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EE 213 (451)
T ss_dssp ---------ESCHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EE
T ss_pred ---------ECCHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cE
Confidence 778999999999999999999999999999999999999999998876532 2468999999996 79
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHH-HHHHHHHHHHc-----Ccee
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVG 344 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL-~~~A~rla~aL-----Gy~G 344 (2267)
++|.++.| |+.+... ...++++++.+ ..|++.+++++.+++ ++.+.++++++ +|.|
T Consensus 214 ~sv~~~~d--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G 287 (451)
T 2yrx_A 214 FSFMAFVN--GEKVYPL----AIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLG 287 (451)
T ss_dssp EEEEEEEE--TTEEEEC----CCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred EEEEEEEc--CCEEEEe----eeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 99999986 4544332 22344444432 357766888888888 66777777765 7889
Q ss_pred eeEEEEEEEccCCcEEEeeeCccCcCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccc
Q 000092 345 AATVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVI 423 (2267)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~ 423 (2267)
++++||++++ +| +||||+|||+++.. ...+..+|+|+++++++++.|.+.+ +
T Consensus 288 ~~~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~~~~-~------------------------ 340 (451)
T 2yrx_A 288 VLYAGLMATA-NG-PKVIEFNARFGDPEAQVVLPRLKTDLVEAVLAVMDGKELE-L------------------------ 340 (451)
T ss_dssp EEEEEEEEET-TE-EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHTTCCCC-C------------------------
T ss_pred EEEEEEEEeC-CC-cEEEEEecCCCCcHHHHHHHHcCCCHHHHHHHHhcCCCCC-c------------------------
Confidence 9999999994 44 99999999998764 3455678999999999999985431 0
Q ss_pred ccCCCccccCCCCCceEEEEEEE----ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcc----cccCCcccEE
Q 000092 424 ATPFDFDQAESTRPKGHCVAVRV----TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGI----HEFSDSQFGH 495 (2267)
Q Consensus 424 ~i~f~~~~~~~~~~~Ghai~aRI----~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i----~~~~Ds~~g~ 495 (2267)
.+ ..++++...+ ++++|..++. ..| +.++ . |++.++. .|..+ .......+||
T Consensus 341 --~~---------~~~~~~~~~l~~~g~p~~~~~g~~-i~~-~~~~---~-~~~~v~~---~G~~~~~~~~~~~~~rvg~ 400 (451)
T 2yrx_A 341 --EW---------TDEAVLGVVLAAKGYPGAYERGAE-IRG-LDRI---S-PDALLFH---AGTKREGGAWYTNGGRVLL 400 (451)
T ss_dssp --CB---------CSSEEEEEEEEETTTTSSCCCCCE-EBC-GGGS---C-TTSEEEE---SSEEEETTEEEECSSEEEE
T ss_pred --cc---------cCCceEEEEEecCCcCCCCCCCCc-CcC-cccc---C-CCCEEEe---CcccccCCeEEcCCCeEEE
Confidence 01 0134444444 3444444431 122 2322 2 4543332 12211 1122356999
Q ss_pred EEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 496 VFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 496 via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
|++.|+|+++|++++.++++.+.++|
T Consensus 401 v~~~g~~~~ea~~~~~~~~~~i~~~~ 426 (451)
T 2yrx_A 401 LAAKGETLAKAKEKAYEQLAAIDCDG 426 (451)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCBCTT
T ss_pred EEEEeCCHHHHHHHHHHHhhccccCC
Confidence 99999999999999999999999998
No 45
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=100.00 E-value=2.4e-34 Score=361.84 Aligned_cols=374 Identities=20% Similarity=0.230 Sum_probs=274.3
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+|.....+++++ +++|++++ + +.+. +....+.+| . ++. ++.|.+.|+++|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~~-----~~~d~~~l~~~~~ 59 (422)
T 2xcl_A 2 NVLIIGKGGREHTLAWKAAQSSLVENV---------F-AAPG----NDGMAASAQ-L--VNI-----EESDHAGLVSFAK 59 (422)
T ss_dssp EEEEEECSHHHHHHHHHHTTCTTCSEE---------E-EEEC----CGGGTTTCE-E--CCC-----CTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE---------E-EeCC----Chhhhhhcc-c--ccc-----CcCCHHHHHHHHH
Confidence 799999996666666655 45787764 1 2222 233345566 3 332 5678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (422)
T 2xcl_A 60 QNQVGLTIVGPEVPL-IEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYET---------------- 122 (422)
T ss_dssp HTTEEEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEE----------------
T ss_pred HcCCCEEEECCcHHH-HHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999999854221 124678888999999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhie 284 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~s 194 (422)
T 2xcl_A 123 -------FTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFS 194 (422)
T ss_dssp -------ESCHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEE
T ss_pred -------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEE
Confidence 778999999999999999999999999999999999999999999886521 1368999999995 8999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEE------------EecCCCCCCHHHHHHHH-HHHHHHHHHc-----Cceeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKLE-QAARRLAKCV-----NYVGAA 346 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKii------------eeaPa~~l~~e~~~eL~-~~A~rla~aL-----Gy~Ga~ 346 (2267)
|.++.| |+.+... ...++|+++. ...|++.+++++.+++. +.+.++++++ +|.|++
T Consensus 195 v~~~~d--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (422)
T 2xcl_A 195 LMAFVK--GEKVYPM----VIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVL 268 (422)
T ss_dssp EEEEEE--TTEEEEC----CCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEc--CCEEEec----ceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999987 4443332 2233344333 23577668888888884 4777777765 789999
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2267)
++||++++ +| +||+|+|||+++.. ...+..+|+|+.+++++++.|...+ +
T Consensus 269 ~vd~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~l~~-~-------------------------- 319 (422)
T 2xcl_A 269 YAGLMLTE-NG-SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDKEVD-L-------------------------- 319 (422)
T ss_dssp EEEEEEET-TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTCCCC-C--------------------------
T ss_pred EeeEEEeC-CC-cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcCCcCc-c--------------------------
Confidence 99999993 44 99999999998764 3455679999999999999885321 0
Q ss_pred CCCccccCCCCCceEEEEEEEcc----CCCCCCCCCCCCccccccccCCCcEEEEE-eee-eCCcccccCCcccEEEEEE
Q 000092 426 PFDFDQAESTRPKGHCVAVRVTS----EDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHVFAF 499 (2267)
Q Consensus 426 ~f~~~~~~~~~~~Ghai~aRI~a----Edp~~~F~Ps~G~i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~via~ 499 (2267)
.+ ..++++.+++.+ ++|..++ +..| +.++ . |++.++. +.. .++.+.... .++|||+++
T Consensus 320 ~~---------~~~~~~~~~~~~~g~~~~~~~g~-~i~~-~~~~---~-~~~~~~~~g~~~~~~~~~~~~-~r~~~v~~~ 383 (422)
T 2xcl_A 320 RW---------KDTAAVSVVLASEGYPESYAKGT-PIGS-LAAE---T-EQVVVFHAGTKAEGGEFVTNG-GRVANVTAF 383 (422)
T ss_dssp CB---------CSCEEEEEEEEETTTTSCCCSCC-BCCC-CCCC---S-SSEEEEESSEEECSSSEEECS-SEEEEEEEE
T ss_pred cc---------cCCceEEEEEECCCCCCCCCCCC-cccC-cccC---C-CCcEEEEeeeEeeCCEEEeCC-CceEEEEEE
Confidence 01 013455555543 3333333 2223 2222 2 5665432 111 113333333 448999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000092 500 GESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2267)
|+|+++|++++.++++.+.++|
T Consensus 384 g~~~~~a~~~~~~~~~~i~~~g 405 (422)
T 2xcl_A 384 DETFEAARDRVYKAVDEIFKPG 405 (422)
T ss_dssp ESSHHHHHHHHHHHHHHHCCTT
T ss_pred eCCHHHHHHHHHHHHhcceeCC
Confidence 9999999999999999999988
No 46
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=100.00 E-value=2e-33 Score=354.98 Aligned_cols=384 Identities=18% Similarity=0.179 Sum_probs=283.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
+.||||+|+|.-...+++++++.+. +..|. +.+ .|......++ ...++ -++.|.+.|+++|
T Consensus 3 ~mkvlviG~ggre~ala~~l~~s~~--------v~~v~-~~p----gn~g~~~~~~-~~~~~-----~~~~d~~~l~~~a 63 (431)
T 3mjf_A 3 AMNILIIGNGGREHALGWKAAQSPL--------ADKIY-VAP----GNAGTALEPT-LENVD-----IAATDIAGLLAFA 63 (431)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTT--------EEEEE-EEE----CCHHHHHCTT-CEECC-----CCTTCHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCC--------CCEEE-EEC----CCHHHhhhcc-cceec-----CCcCCHHHHHHHH
Confidence 4589999999877778888877642 12222 232 2222223333 21122 1567899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+++++|+|++|.+.... ..+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 64 ~~~~id~vv~g~e~~l~-~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~--------------- 127 (431)
T 3mjf_A 64 QSHDIGLTIVGPEAPLV-IGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQN--------------- 127 (431)
T ss_dssp HHTTEEEEEECSHHHHH-TTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEE---------------
T ss_pred HHhCcCEEEECCchHHH-HHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEe---------------
Confidence 99999999998543221 35788999999999999999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rhi 283 (2267)
+++.+++.++++++|||+||||..|+||+||++++|.+|+.++++.+... ..+.+++||+|++| +|+
T Consensus 128 --------~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~ 198 (431)
T 3mjf_A 128 --------FTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEA 198 (431)
T ss_dssp --------ESCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEE
T ss_pred --------eCCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEE
Confidence 78899999999999999999999999999999999999999999987632 22468999999996 899
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHHHHH----HHHHHHHcC--ceee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLEQA----ARRLAKCVN--YVGA 345 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL~~~----A~rla~aLG--y~Ga 345 (2267)
+|.++.|+. +++.+.. .++|+++.+ ..|++.++++..+++.+. +.+.++++| |+|+
T Consensus 199 sv~~~~dg~-~~~~~~~-----~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~ 272 (431)
T 3mjf_A 199 SFIVMVDGE-NVLPMAT-----SQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGF 272 (431)
T ss_dssp EEEEEEESS-CEEECCC-----BEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEEcCC-EEEEEEe-----eEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999874 6665532 344555433 468877899999888876 667777655 4899
Q ss_pred eEEEEEEEccCCcEEEeeeCccCcCCcceeh---hhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 346 ATVEYLYSMETGEYYFLELNPRLQVEHPVTE---WIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 346 ~tVEfl~d~~~g~~yfLEINpRlqgehpvtE---~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
.++||++++ +|++||||+|||++ +|.++ ..+|+||.+++++++.|....
T Consensus 273 ~~ve~~~~~-~g~~~viEiN~R~G--~~~~~~i~~~~g~dl~~~~~~~~~G~l~~------------------------- 324 (431)
T 3mjf_A 273 LYAGLMISA-DGQPKVIEFNCRFG--DPETQPIMLRMRSDLVELCLAGTQGKLNE------------------------- 324 (431)
T ss_dssp EEEEEEECT-TSCEEEEEECGGGS--TTTHHHHHHHBCSCHHHHHHHHHTTCGGG-------------------------
T ss_pred EEEEEEEeC-CCCeEEEEEecCCC--CcHHHHHHHHHCCCHHHHHHHHHcCCCCC-------------------------
Confidence 999999984 56799999999997 55555 789999999999999996321
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc-ccCCCcEEEEE-eeee-CC-cccccCCcccEEEEE
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS-FKSKPNVWAYF-SVKS-GG-GIHEFSDSQFGHVFA 498 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~-~~s~~~V~~~~-~v~~-G~-~i~~~~Ds~~g~via 498 (2267)
.++.|+ .....+.++++.-|++++.++. .|..+. ... +++.++. ++.. ++ .+. ....++++|++
T Consensus 325 ~~~~~~-----~~~a~~vv~a~~gyp~~~~~g~-----~i~~~~~~~~-~~~~~~~ag~~~~~~~~~~-~~ggRv~~v~~ 392 (431)
T 3mjf_A 325 KTSDWD-----ERPSLGVVLAAGGYPADYRQGD-----VIHGLPQQEV-KDGKVFHAGTKLNGNHEVV-TNGGRVLCVTA 392 (431)
T ss_dssp CCCCBC-----SSCEEEEEEEETTTTSCCCCCC-----BCBCCCSSCB-TTEEEEESSEEECTTSCEE-ECSSEEEEEEE
T ss_pred CCcccc-----CCcEEEEEecCCCcCccCCCCC-----EeeCCccccC-CCcEEEEeeeEecCCCEEE-ecCCeEEEEEE
Confidence 112221 1112234444444555554432 222221 111 4665442 2322 22 332 24577999999
Q ss_pred EeCCHHHHHHHHHHhhcceEEec
Q 000092 499 FGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 499 ~G~~reeA~~~l~~AL~el~I~G 521 (2267)
.|+|.++|+++++++++.+++.|
T Consensus 393 ~g~~~~~A~~~a~~~~~~i~~~~ 415 (431)
T 3mjf_A 393 LGETVAQAQQYAYQLAEGIQWEG 415 (431)
T ss_dssp ECSSHHHHHHHHHHHHTTCBCTT
T ss_pred ecCCHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999998
No 47
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=100.00 E-value=7e-33 Score=351.11 Aligned_cols=384 Identities=16% Similarity=0.144 Sum_probs=285.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
-.||||+|+|.-...+++++++.+. +..+.+ .+ ..+....+++.+.+ ++.|.+.|+++|
T Consensus 21 ~m~ilvlG~ggre~ala~~l~~s~~--------v~~v~~-~p-----gn~g~~~~~~~~~i-------~~~d~~~l~~~a 79 (442)
T 3lp8_A 21 SMNVLVIGSGGREHSMLHHIRKSTL--------LNKLFI-AP-----GREGMSGLADIIDI-------DINSTIEVIQVC 79 (442)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTT--------EEEEEE-EE-----CCGGGTTTSEECCC-------CTTCHHHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCC--------CCEEEE-EC-----CChHHhhccceeec-------CcCCHHHHHHHH
Confidence 3589999999888888888877632 222222 22 23455566766544 567899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+++++|+|++|.+.... ..+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 80 ~~~~id~vv~g~E~~l~-~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~--------------- 143 (442)
T 3lp8_A 80 KKEKIELVVIGPETPLM-NGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGY--------------- 143 (442)
T ss_dssp HHTTCCEEEECSHHHHH-TTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEE---------------
T ss_pred HHhCCCEEEECCcHHHH-HHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 99999999998433211 24678899999999999999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rhi 283 (2267)
+++.+++.++++++|||+||||..|+||+|+++++|.+|+.++++++... ..+.+++||+|++| +|+
T Consensus 144 --------~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~ 214 (442)
T 3lp8_A 144 --------FVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KEI 214 (442)
T ss_dssp --------ESSHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEE
T ss_pred --------ECCHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cEE
Confidence 78899999999999999999999999999999999999999999988743 11368999999996 899
Q ss_pred eEEEEEcCCCCEEEecccccccccccceE------------EEecCCCCCCHHHHHHHHHH----HHHHHHHcCc--eee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKLEQA----ARRLAKCVNY--VGA 345 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKi------------ieeaPa~~l~~e~~~eL~~~----A~rla~aLGy--~Ga 345 (2267)
+|.++.|+. +++.+.. .++|++. ....|++.++++..+++.+. +.++++++|+ +|+
T Consensus 215 sv~~~~dg~-~~~~~~~-----~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~ 288 (442)
T 3lp8_A 215 SFFTLVDGS-NPVILGV-----AQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGL 288 (442)
T ss_dssp EEEEEEESS-CEEEEEE-----EEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEECCC-eEEEeEE-----eEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 999999864 4544321 2233333 23458877899999999887 8888888887 899
Q ss_pred eEEEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccc
Q 000092 346 ATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIA 424 (2267)
Q Consensus 346 ~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~ 424 (2267)
+++||+++ .+++||||+|||+++ +++.+...+|.|+.+++++++.|..... .
T Consensus 289 ~~ve~~~~--~~g~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~l~~~-------------------------~ 341 (442)
T 3lp8_A 289 LFAGIIIK--KNEPKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKLGNE-------------------------S 341 (442)
T ss_dssp EEEEEEEE--TTEEEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTCCSSC-------------------------C
T ss_pred EEEEEEEe--CCCeEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCCCCCC-------------------------C
Confidence 99999999 345999999999995 5777777899999999999999963221 1
Q ss_pred cCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc-ccCCCcEEEEE-eeee-CCcccccCCcccEEEEEEeC
Q 000092 425 TPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS-FKSKPNVWAYF-SVKS-GGGIHEFSDSQFGHVFAFGE 501 (2267)
Q Consensus 425 i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~-~~s~~~V~~~~-~v~~-G~~i~~~~Ds~~g~via~G~ 501 (2267)
+.|. ....-+.++++.-|++++..+ ..|..+. ....+++.++. ++.. .+.+. ....+++.|++.|+
T Consensus 342 ~~~~-----~~~a~~vv~a~~gyp~~~~~g-----~~i~g~~~~~~~~~~~~~~ag~~~~~~~~~-~~ggRv~~v~~~g~ 410 (442)
T 3lp8_A 342 VELS-----KKAALCVVVASRGYPGEYKKN-----SIINGIENIEKLPNVQLLHAGTRREGNNWV-SDSGRVINVVAQGE 410 (442)
T ss_dssp CCBC-----SCEEEEEEEEETTTTSSCCSS-----CEEBSHHHHHTCSSEEEEESSEEEETTEEE-ECSSEEEEEEEEES
T ss_pred ceec-----cCcEEEEEEccCCCCCCCCCC-----CEeeCCcccccCCCcEEEEeeeeccCCeEE-ecCCeEEEEEEecC
Confidence 1221 001112223333334333222 1233232 23335665442 2221 22222 24567999999999
Q ss_pred CHHHHHHHHHHhhcceEEec
Q 000092 502 SRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G 521 (2267)
|.++|+++++++++.+++.|
T Consensus 411 ~~~~A~~~a~~~~~~i~~~~ 430 (442)
T 3lp8_A 411 NLASAKHQAYAALDLLDWPD 430 (442)
T ss_dssp SHHHHHHHHHHHHTTCBCTT
T ss_pred CHHHHHHHHHHHhcccCCCC
Confidence 99999999999999999998
No 48
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=1.1e-32 Score=381.58 Aligned_cols=304 Identities=17% Similarity=0.276 Sum_probs=241.9
Q ss_pred CccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
+.+||||+|+|.. +++++++++++||+++ ++..+.+..+.....||+.+..|
T Consensus 558 ~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi-----------~v~~np~~~s~~~~~ad~~~~~p------ 620 (1073)
T 1a9x_A 558 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETI-----------MVNCNPETVSTDYDTSDRLYFEP------ 620 (1073)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEE-----------EECCCTTSSTTSTTSSSEEECCC------
T ss_pred cCcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEE-----------EEecCCcccccccccccEEEecc------
Confidence 5689999999984 5788999999999986 44333333334556789887543
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
.+.+.++++++..++|+|++++|.... ..++..|++.|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 621 --~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~--- 694 (1073)
T 1a9x_A 621 --VTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANAT--- 694 (1073)
T ss_dssp --CSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEE---
T ss_pred --chhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceE---
Confidence 458999999999999999999875332 25788999999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+.......+++||+
T Consensus 695 --------------------~~s~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEe 754 (1073)
T 1a9x_A 695 --------------------VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 754 (1073)
T ss_dssp --------------------CCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEB
T ss_pred --------------------ECCHHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 789999999999999999999999999999999999999999999876555567999999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccc--c-ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--H-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr--~-qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
|++|.+|++|++++|+.+.++...... +.+. | .......|+..++++..+++.+.+.++++++|++|.++|||++
T Consensus 755 fI~g~~E~~V~~l~d~~~v~~~~i~e~--~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v 832 (1073)
T 1a9x_A 755 FLDDAVEVDVDAICDGEMVLIGGIMEH--IEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV 832 (1073)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEEEEEE--SSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEECCeEEEEeeEEE--EeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE
Confidence 999977999999999754332211111 1111 1 1112345776789999999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+ ++++||||+|||+++++|+++.++|+|++++++++++|.+++
T Consensus 833 ~--~~~~~viEvNpR~~~~~~~~~~~tGi~l~~~~~~~~~G~~l~ 875 (1073)
T 1a9x_A 833 K--NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLA 875 (1073)
T ss_dssp C--SSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHHHTTCCHH
T ss_pred E--CCeEEEEEEECCCccHHHHHHHHHCcCHHHHHHHHHcCCCch
Confidence 7 789999999999999999999999999999999999999875
No 49
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.98 E-value=2.1e-31 Score=323.93 Aligned_cols=290 Identities=17% Similarity=0.193 Sum_probs=212.2
Q ss_pred cEEEEECchHHHHHHHHHHHHc-C-CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTW-A-YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~l-G-~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+||||+|+|.. ..+++++++. | ++++ ++ |.+++++...++|+++.+|... +..| .+.++++
T Consensus 5 ~~Ili~g~g~~-~~l~~~l~~~~~~~~v~-----------~~--d~~~~~~~~~~~d~~~~~~~~~-~~~~--~~~l~~~ 67 (331)
T 2pn1_A 5 PHLLITSAGRR-AKLVEYFVKEFKTGRVS-----------TA--DCSPLASALYMADQHYIVPKID-EVEY--IDHLLTL 67 (331)
T ss_dssp CEEEEESCTTC-HHHHHHHHHHCCSSEEE-----------EE--ESCTTCGGGGGSSSEEECCCTT-STTH--HHHHHHH
T ss_pred ceEEEecCCch-HHHHHHHHHhcCCCEEE-----------EE--eCCCcchhHHhhhceecCCCCC-ChhH--HHHHHHH
Confidence 58999999865 5677888876 5 5654 44 4456777888999999887432 2333 8999999
Q ss_pred HHHcCCCEEEeCCCcCC-CCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 127 AEMTRVDAVWPGWGHAS-EIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~s-En~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
++++++|+|+|+++... ..+.+.+.|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 68 ~~~~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------- 134 (331)
T 2pn1_A 68 CQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYA------------- 134 (331)
T ss_dssp HHHHTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEES-------------
T ss_pred HHHcCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEe-------------
Confidence 99999999999876322 1122356777789999999999999999999999999999999999653
Q ss_pred cCcccccccccCCHHHHHHHH--hhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 206 IPDDVYRQACVYTTEEAIASC--QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a--~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+++.+++ +.+|||+|+||..|+||+|++++++.+|+.++++. ..+++||+|++| +|+
T Consensus 135 ------------~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~------~~~~lvee~i~G-~e~ 195 (331)
T 2pn1_A 135 ------------TMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK------NTDLIVQELLVG-QEL 195 (331)
T ss_dssp ------------SHHHHHHHHHTTSSCSCEEEEESBC-----------------------------CEEEEECCCS-EEE
T ss_pred ------------cHHHhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh------CCCeEEEecCCC-cEE
Confidence 345555555 57899999999999999999999999999988764 348999999998 899
Q ss_pred eEEEEEc-CCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 284 EVQLLCD-QYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 284 eVqvl~D-~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+|.++.| .+|+++.+..+.+...+.. .....+.. ..+++.+.+.++++++||.|.+++||+.+ +|++||+
T Consensus 196 ~v~~~~d~~~G~~~~~~~~~~~~~~~g--~~~~~~~~-----~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g~~~~i 266 (331)
T 2pn1_A 196 GVDAYVDLISGKVTSIFIKEKLTMRAG--ETDKSRSV-----LRDDVFELVEHVLDGSGLVGPLDFDLFDV--AGTLYLS 266 (331)
T ss_dssp EEEEEECTTTCCEEEEEEEEEEEEETT--EEEEEEEE-----CCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TTEEEEE
T ss_pred EEEEEEecCCCeEEEEEEEEEEEecCC--ceeEeEEe-----ccHHHHHHHHHHHHHhCCcceEEEEEEEc--CCCEEEE
Confidence 9999998 7788887666554332222 11122211 13678889999999999999999999965 7899999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
|+|||+++.+++ +..+|+|++++++++++|.+++
T Consensus 267 EiN~R~~g~~~~-~~~~G~~~~~~~~~~~~g~~~~ 300 (331)
T 2pn1_A 267 EINPRFGGGYPH-AYECGVNFPAQLYRNLMHEINV 300 (331)
T ss_dssp EEESSCCTTHHH-HHHTTCCHHHHHHHHHTTCCCC
T ss_pred EEeCCCCCchHH-HHHcCCCHHHHHHHHHcCCCCC
Confidence 999999999875 6789999999999999999875
No 50
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.96 E-value=6.5e-30 Score=315.54 Aligned_cols=242 Identities=18% Similarity=0.156 Sum_probs=195.8
Q ss_pred HHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCC
Q 000092 123 IVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPES 201 (2267)
Q Consensus 123 Il~iA~~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~ 201 (2267)
+.+..+..++|+|+|. +|+..|+..++..|+..||+|+||++.++..+.||..+|++++++|||+|||..- .
T Consensus 89 ~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~----~--- 161 (357)
T 4fu0_A 89 ASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTF----K--- 161 (357)
T ss_dssp ----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEE----E---
T ss_pred hhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEee----c---
Confidence 3445566789999998 7899999999999999999999999999999999999999999999999998650 0
Q ss_pred cccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 202 CLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 202 ~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
......++.++++++||||||||+.|+||+||++|++.+||.++++.+... +..+++|+|++| +
T Consensus 162 -------------~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~--~~~vlvE~~i~G-~ 225 (357)
T 4fu0_A 162 -------------RFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH--DTEVIVEETING-F 225 (357)
T ss_dssp -------------GGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCCS-E
T ss_pred -------------CCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc--CCeEEEEEecCC-E
Confidence 012234455677889999999999999999999999999999999988754 568999999976 8
Q ss_pred eeeEEEEEcCCCCEEEe--cccccccccccceEEE-----ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 282 HLEVQLLCDQYGNVAAL--HSRDCSVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l--~~Rdcsvqrr~qKiie-----eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
|++|++++++.+.+..+ ....+.+++.++|... ..|+. +++++.+++++.|.+++++||++|.++|||++++
T Consensus 226 e~~v~vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~-l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~ 304 (357)
T 4fu0_A 226 EVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR-IDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP 304 (357)
T ss_dssp EEEEEEEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEESSCS-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEEEecCCceEEEEEEEEcccccccccccccCCCceEecCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeC
Confidence 99999999876544322 2334556666666543 23554 8999999999999999999999999999999984
Q ss_pred cCCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHH
Q 000092 355 ETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 355 ~~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~ 389 (2267)
+|++||||||||++-. .|..-.++|+|+.++.-+
T Consensus 305 -dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 342 (357)
T 4fu0_A 305 -SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDK 342 (357)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHH
T ss_pred -CCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHH
Confidence 7889999999998754 244445689988776444
No 51
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.95 E-value=2.1e-27 Score=295.22 Aligned_cols=234 Identities=18% Similarity=0.149 Sum_probs=191.7
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|+. |...|+..++..|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 91 ~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~--------------- 155 (377)
T 1ehi_A 91 AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIV--------------- 155 (377)
T ss_dssp TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEE---------------
T ss_pred ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEE---------------
Confidence 35799999997 67778888899999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHHH----HHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEE----AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~ee----a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+.++ +.++++.+|||+||||..|+||+||.+|++.+||.++++.+... +.+++||+||+|.+|+
T Consensus 156 --------~~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~ 225 (377)
T 1ehi_A 156 --------VDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY--DYKVLIEEAVNGAREL 225 (377)
T ss_dssp --------ECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCCSCEE
T ss_pred --------EeccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc--CCcEEEEcCCCCCceE
Confidence 233322 45566789999999999999999999999999999999887643 4689999999876899
Q ss_pred eEEEEEcCCCCEEEecccccc-------cccccceE------EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEE
Q 000092 284 EVQLLCDQYGNVAALHSRDCS-------VQRRHQKI------IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEY 350 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcs-------vqrr~qKi------ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEf 350 (2267)
+|.+++|+.+.++....+.+. +.+.+.|. ....|+. ++++..+++.+.|.++++++|+.|.++|||
T Consensus 226 ~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 304 (377)
T 1ehi_A 226 EVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 (377)
T ss_dssp EEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999876566665444331 22222222 2345776 889999999999999999999999999999
Q ss_pred EEEccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHH
Q 000092 351 LYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~ 389 (2267)
++++ +|++||||+|||++... |....++|+|++++..+
T Consensus 305 ~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~ 346 (377)
T 1ehi_A 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDM 346 (377)
T ss_dssp EECT-TCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHH
T ss_pred EEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 9984 67899999999998653 44445799999666444
No 52
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.95 E-value=3.7e-27 Score=286.02 Aligned_cols=278 Identities=18% Similarity=0.202 Sum_probs=211.5
Q ss_pred CCccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000092 46 KPIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2267)
Q Consensus 46 ~~~kkVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~ 116 (2267)
.|.+||+|+-+|. .|..+++++++.||+++ .+ |.+..
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~-----------~i--~~~~~--------------------- 56 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAH-----------PF--DPAER--------------------- 56 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTTTS---------------------
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEE-----------EE--eCCCc---------------------
Confidence 3567888887764 68899999999999986 33 21100
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
+. . ..++.++|.|++.. |...|+..++..|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 57 ~~--~----~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--- 127 (317)
T 4eg0_A 57 PL--S----ALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFET--- 127 (317)
T ss_dssp CT--T----HHHHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE---
T ss_pred hH--H----HhhhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEE---
Confidence 00 0 12456899999865 34458888999999999999999999999999999999999999999999875
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHH----hhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASC----QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI 271 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a----~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I 271 (2267)
+.+.+++.+++ +.+|||+||||..|+||+||++|++.+|+.++++.+... ..++
T Consensus 128 --------------------~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~ 185 (317)
T 4eg0_A 128 --------------------VMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATH--DKIV 185 (317)
T ss_dssp --------------------EETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTT--CSEE
T ss_pred --------------------EECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeE
Confidence 33444444555 789999999999999999999999999999999886533 5689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEecccccccccccceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeee
Q 000092 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346 (2267)
Q Consensus 272 ~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~ 346 (2267)
+||+|++.++|++|.+++|..+.++.+..... +.....|. ....|+. ++++..+++.+.+.++++++|++|.+
T Consensus 186 lvEe~i~~G~E~~v~vl~~~~~~~~~i~~~~~-~~~~~~k~~~g~~~~~~P~~-l~~~~~~~l~~~a~~~~~~lg~~G~~ 263 (317)
T 4eg0_A 186 IVEKSIEGGGEYTACIAGDLDLPLIKIVPAGE-FYDYHAKYVANDTQYLIPCG-LPAEQETELKRIARRAFDVLGCTDWG 263 (317)
T ss_dssp EEEECCCSSEEEEEEEETTCCCCCEEEEC----------------CEEESSCS-SCHHHHHHHHHHHHHHHHTTTCCSEE
T ss_pred EEEcCCCCCcEEEEEEECCcccceEEEeeCCc-eechhhcccCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCceE
Confidence 99999984499999999887666666543321 22222222 2456775 88999999999999999999999999
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHHH
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~iA 391 (2267)
+|||++++ +|++||||+|||++.. .|.....+|+|++++..++.
T Consensus 264 ~vD~~~~~-~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 264 RADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp EEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEeC-CCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 99999984 6889999999999854 24444578999998877764
No 53
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.95 E-value=2.1e-27 Score=293.67 Aligned_cols=235 Identities=18% Similarity=0.206 Sum_probs=187.9
Q ss_pred HHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 128 EMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 128 ~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
+..++|+|+|+. |...|+..++..++..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 84 ~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 149 (364)
T 2i87_A 84 SGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYIS-------------- 149 (364)
T ss_dssp TSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEE--------------
T ss_pred cccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE--------------
Confidence 356799999987 67788888899999999999999999999999999999999999999999875
Q ss_pred CcccccccccCCHH-------HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc
Q 000092 207 PDDVYRQACVYTTE-------EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279 (2267)
Q Consensus 207 ~~~~~~~~~V~s~e-------ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g 279 (2267)
+.+.+ ++.++++++|||+||||..|+||+||.+|++.++|..+++.+.. .+.+++||+|++|
T Consensus 150 ---------~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~--~~~~~lvEe~I~G 218 (364)
T 2i87_A 150 ---------FLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ--FDRKLVIEQGVNA 218 (364)
T ss_dssp ---------EEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT--TCSEEEEEECCCC
T ss_pred ---------EechhhcccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCeEEEEeCccC
Confidence 33333 45666788999999999999999999999999999999988764 2568999999987
Q ss_pred cceeeEEEEEcCCCCEEEeccccc--ccccccceEEE-----ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDC--SVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdc--svqrr~qKiie-----eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
+|++|.+++++.+.++......+ .+.+...|... ..|+. ++++..+++.+.|.++++++|+.|.++|||++
T Consensus 219 -~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 296 (364)
T 2i87_A 219 -REIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD-LDEDVQLTLRNMALEAFKATDCSGLVRADFFV 296 (364)
T ss_dssp -EEEEEEEEESSSCEECCCEEECCSCCC-----------CCEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred -eEEEEEEEcCCCcEEeeeEEEecCCCcCCHHHcccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 89999999986543333222221 22233333332 35766 88999999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
++ +|++||||+|||+++.. |....++|+|++++..++
T Consensus 297 ~~-~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 337 (364)
T 2i87_A 297 TE-DNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKL 337 (364)
T ss_dssp CT-TCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred ec-CCCEEEEEEeCCCCCCchhHHHHHHHHhCCCHHHHHHHH
Confidence 84 68899999999998753 334456899997765443
No 54
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.95 E-value=1.4e-26 Score=277.87 Aligned_cols=273 Identities=17% Similarity=0.265 Sum_probs=210.8
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000092 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 47 ~~kkVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y 117 (2267)
|.+||+|+++|. .+..++++++++||+++ .+ |.+ +....+
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~-----------~~--~~~-~~~~~~----------------- 49 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-----------PV--DPK-EVDVTQ----------------- 49 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTT-TSCGGG-----------------
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEE-----------EE--ecC-chHHHH-----------------
Confidence 346899999987 77899999999999985 33 221 111100
Q ss_pred cCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCcc
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~ 196 (2267)
+.+.++|+|++.. |...|+..+...++..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 50 ---------~~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~---- 116 (306)
T 1iow_A 50 ---------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA---- 116 (306)
T ss_dssp ---------TTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE----
T ss_pred ---------hhccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEE----
Confidence 1124678998874 33346667788888899999999999999999999999999999999999865
Q ss_pred CCCCCcccccCcccccccccCCHHHHHH--------HHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC
Q 000092 197 IPPESCLVTIPDDVYRQACVYTTEEAIA--------SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268 (2267)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~--------~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~ 268 (2267)
+.+. ++.+ +++++|||+|+||..|+||+||++|++.+++.++++.+... +
T Consensus 117 -------------------~~~~-~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~--~ 174 (306)
T 1iow_A 117 -------------------LTRA-EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH--D 174 (306)
T ss_dssp -------------------EEHH-HHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTT--C
T ss_pred -------------------Echh-hhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--C
Confidence 3444 5555 67789999999999999999999999999999999877532 5
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEecccc-----ccccccc--ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcC
Q 000092 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRD-----CSVQRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341 (2267)
Q Consensus 269 ~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rd-----csvqrr~--qKiieeaPa~~l~~e~~~eL~~~A~rla~aLG 341 (2267)
.+++||+|++| +|++|.++ + |.++....+. +.....+ .......|+. ++++..+++.+.+.++++++|
T Consensus 175 ~~~lvee~i~g-~e~~v~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg 249 (306)
T 1iow_A 175 EEVLIEKWLSG-PEFTVAIL-G--EEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAG-LEASQEANLQALVLKAWTTLG 249 (306)
T ss_dssp SEEEEEECCCC-CEEEEEEE-T--TEECCCEEEECSSSSSCHHHHHTCSCCEEESSCC-CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCcCC-EEEEEEEE-C--CCccceEEEEeCCCeEchhheecCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHcC
Confidence 68999999986 89999998 3 3443322110 1110000 1223455765 788899999999999999999
Q ss_pred ceeeeEEEEEEEccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 342 YVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 342 y~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
+.|.+++||++++ +|++||+|+|||+++.. |.....+|+|++++.+++.
T Consensus 250 ~~G~~~vD~~~~~-~g~~~~iEiN~rpg~~~~s~~p~~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 250 CKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 (306)
T ss_dssp CCSEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CceEEEEEEEEcC-CCCEEEEEecCCCCCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999984 67899999999998753 3445678999999988765
No 55
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.95 E-value=4.5e-27 Score=293.02 Aligned_cols=234 Identities=16% Similarity=0.200 Sum_probs=192.9
Q ss_pred HcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|+ .|...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 115 ~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~--------------- 179 (386)
T 3e5n_A 115 LAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVC--------------- 179 (386)
T ss_dssp CCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred cCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 4579999999 788889999999999999999999999999999999999999999999999876
Q ss_pred cccccccccCCHH----HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTE----EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~e----ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+.+ ++.++++.+|||+||||..|+||+||++|++.+||.++++.+... +.+++||+||+| +|+
T Consensus 180 --------~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 248 (386)
T 3e5n_A 180 --------FDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAY--DHKVLVEAAVAG-REI 248 (386)
T ss_dssp --------EEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT--CSEEEEEECCCS-EEE
T ss_pred --------EeCcccchhhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC--CCcEEEEcCCCC-eEE
Confidence 44444 666778899999999999999999999999999999999887643 468999999987 999
Q ss_pred eEEEEEcCCCCEEEecccccc--cccccceEEE------ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEcc
Q 000092 284 EVQLLCDQYGNVAALHSRDCS--VQRRHQKIIE------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcs--vqrr~qKiie------eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~ 355 (2267)
+|.+++|+.+.++......+. ++....|... ..|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 249 ~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 326 (386)
T 3e5n_A 249 ECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD-IDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA- 326 (386)
T ss_dssp EEEEECSSSCEEEEEEEECC-----------------CEESSCS-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT-
T ss_pred EEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 999999876666655554443 2333444443 24776 8899999999999999999999999999999984
Q ss_pred CCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|+|||++.. .|.....+|+|++++..++
T Consensus 327 dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 327 DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHH
Confidence 6789999999999854 2444557899998876554
No 56
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=99.94 E-value=2.1e-27 Score=287.47 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=195.6
Q ss_pred cCceE---EEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-CccCCCCCCChHHHhcccccCCCCccccccc
Q 000092 1807 NGVVH---LTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP-VEYLPENSCDPRAAICGFLDNNGKWIGGIFD 1882 (2267)
Q Consensus 1807 nGv~d---~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~-~~~~P~~~yD~R~~i~~~~~~~~~~~~gl~D 1882 (2267)
+|.+| .++.+|.++.+.+++.++.+++. ++. +..-|.++|+ |++|+. |||
T Consensus 37 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~r~~~-re~I~~-----------l~D 90 (327)
T 2f9i_A 37 KNDVDLQEEIDMLEASLERETKKIYTNLKPW--------------DRVQIARLQERPTT-LDYIPY-----------IFD 90 (327)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHSCCHH--------------HHHHHHTBTTSCCH-HHHHHH-----------HCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCChh--------------hcccccCCCCCCCH-HHHHHH-----------hcc
Confidence 44455 67888899999999999987621 110 1112336786 999997 799
Q ss_pred CCCceeccc--ccc--ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHH
Q 000092 1883 KDSFVETLE--GWA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMD 1958 (2267)
Q Consensus 1883 ~gSF~E~~~--~~a--~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~ 1958 (2267)
+ |+|+.. .|+ +++|||+|||+|+||+||++++++ ++.+ .+.+.||+|+|++++|++|++++
T Consensus 91 ~--f~El~~d~~~~~d~~vV~G~gri~G~~V~Via~d~~~------------~~~~-~~~~~~G~~~~~~~~Ka~r~~~~ 155 (327)
T 2f9i_A 91 S--FMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGK------------DTKD-NIYRNFGMAHPEGYRKALRLMKQ 155 (327)
T ss_dssp E--EEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCS------------SHHH-HHHTGGGCCCHHHHHHHHHHHHH
T ss_pred c--eEEecCCCCcCcccceEEEEEEECCEEEEEEEEcCCC------------chhh-hhhhhcCCCCHHHHHHHHHHHHH
Confidence 8 999988 688 899999999999999999997542 2222 33446899999999999999999
Q ss_pred hcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccc
Q 000092 1959 FNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT 2038 (2267)
Q Consensus 1959 a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~ 2038 (2267)
|+++++|||+|+||+||.+|..+|..|+.+++++++.+++++++|+|++|. |+++||+..++.. +|+ ++|||+
T Consensus 156 A~~~~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~--G~a~GGGa~~~~~---~D~--via~~~ 228 (327)
T 2f9i_A 156 AEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVI--GEGGSGGALGIGI---ANK--VLMLEN 228 (327)
T ss_dssp HHHTTCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEBHHHHHTTCC---CSE--EEEETT
T ss_pred HhhcCCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEE--CCcChHHHHHHHC---CCE--EEEcCC
Confidence 999999999999999999999999999999999999999999999999998 7777655544443 688 999999
Q ss_pred cEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhh
Q 000092 2039 AKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELH 2118 (2267)
Q Consensus 2039 A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlh 2118 (2267)
|++|+++|++++.+.+++.... .+ |.++ .+
T Consensus 229 A~~~v~~peg~a~il~~~~~~a--------------------------~~----------------------A~e~--~~ 258 (327)
T 2f9i_A 229 STYSVISPEGAAALLWKDSNLA--------------------------KI----------------------AAET--MK 258 (327)
T ss_dssp CBCBSSCHHHHHHHHSSCGGGH--------------------------HH----------------------HHHH--HT
T ss_pred ceEeecCchHHHHHHHHHhcch--------------------------HH----------------------HHHH--cC
Confidence 9999999999999998865210 00 0011 34
Q ss_pred CcHHHHHHcCCcccccCc-----cchHHHHHHHHHHHHh
Q 000092 2119 DTSLRMAAKGVIKEVVDW-----DKSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2119 dt~~rm~~~G~Id~ii~~-----~~~R~~~~~~L~r~l~ 2152 (2267)
.+|.++++.|+||+||+. ...+..+++.+|+.|.
T Consensus 259 itA~~a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~ 297 (327)
T 2f9i_A 259 ITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFV 297 (327)
T ss_dssp CBHHHHHHTTSSSEEECCCTTCGGGCHHHHHHHHHHHHH
T ss_pred CCHHHHHHcCCceEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 578999999999999993 3556677777777764
No 57
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=99.94 E-value=1.9e-27 Score=288.47 Aligned_cols=246 Identities=16% Similarity=0.199 Sum_probs=197.4
Q ss_pred ceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-CccCCCCCCChHHHhcccccCCCCcccccccCCCce
Q 000092 1809 VVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP-VEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFV 1887 (2267)
Q Consensus 1809 v~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~-~~~~P~~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~ 1887 (2267)
+++.+..+|.++...++++.+.|++. +|. +..-|.++|+ |++|+. |||+ |+
T Consensus 56 ~~~~~~~~e~~~~~~~~~~~~~l~~~--------------~r~~~~r~~~rp~~-re~I~~-----------l~D~--f~ 107 (339)
T 2f9y_A 56 IDEEVHRLREKSVELTRKIFADLGAW--------------QIAQLARHPQRPYT-LDYVRL-----------AFDE--FD 107 (339)
T ss_dssp -CCGGGGTHHHHHTTTTHHHHTCCHH--------------HHHHHHTCTTCCCH-HHHHHH-----------HCEE--EE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHH--------------HhhcccCCCCCCCH-HHHHHH-----------Hccc--cE
Confidence 56667888899999999999887631 111 0111236786 999997 7998 99
Q ss_pred eccc--ccc--ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccC
Q 000092 1888 ETLE--GWA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREE 1963 (2267)
Q Consensus 1888 E~~~--~~a--~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~ 1963 (2267)
|+.. .|+ +++|||+|||+|+||+||++|++. ++.+ .+.+.||+|+|++++|++|++++|++++
T Consensus 108 El~g~~~~~~d~avV~G~ari~G~~V~Via~d~~~------------~~~~-~~~~~~G~~~~~~~~Ka~r~~~~A~~~~ 174 (339)
T 2f9y_A 108 ELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGR------------ETKE-KIRRNFGMPAPEGYRKALRLMQMAERFK 174 (339)
T ss_dssp ECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCS------------STTH-HHHTGGGCCCHHHHHHHHHHHHHHHHTT
T ss_pred EccCCcCCCCCCcEEEEEEEECCEEEEEEEEeCCC------------chhh-hhhhhcCCCCHHHHHHHHHHHHHHhhcC
Confidence 9987 688 899999999999999999997542 1222 3445689999999999999999999999
Q ss_pred CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 1964 LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 1964 lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+|||+|+||+||.+|..+|..|+.+++++++.+++++++|+|++|. |+++||+..++.. +|+ +||||+|++|+
T Consensus 175 lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~--G~a~GGGa~~~~~---~D~--via~p~A~~~v 247 (339)
T 2f9y_A 175 MPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVI--GEGGSGGALAIGV---GDK--VNMLQYSTYSV 247 (339)
T ss_dssp CCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEEHHHHHTTCC---CSE--EEECTTCEEES
T ss_pred CCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--CCcCcHHHHHHhc---cCe--eeecCCCEEEe
Confidence 9999999999999999999999999999999999999999999998 7777665544443 688 99999999999
Q ss_pred eCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHH
Q 000092 2044 LEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLR 2123 (2267)
Q Consensus 2044 l~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~r 2123 (2267)
++|++++.|.+++..-. .+ |.++ .+.++.+
T Consensus 248 ~~Peg~asil~~~~~~~--------------------------~~----------------------Aae~--~~itA~~ 277 (339)
T 2f9y_A 248 ISPEGCASILWKSADKA--------------------------PL----------------------AAEA--MGIIRPR 277 (339)
T ss_dssp SCHHHHHHHHSSCSTTH--------------------------HH----------------------HHHH--HTCSHHH
T ss_pred eccchHHHHHHHhhccH--------------------------HH----------------------HHHH--cCCCHHH
Confidence 99999999998865100 00 0111 3457899
Q ss_pred HHHcCCcccccCc-----cchHHHHHHHHHHHHh
Q 000092 2124 MAAKGVIKEVVDW-----DKSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2124 m~~~G~Id~ii~~-----~~~R~~~~~~L~r~l~ 2152 (2267)
+++.|+||+||+. ...+..+++.||..|.
T Consensus 278 a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~ 311 (339)
T 2f9y_A 278 LKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLL 311 (339)
T ss_dssp HHTTTSCSCCCCCSTTCGGGCHHHHHHHHHHHHH
T ss_pred HHHcCCeeEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 9999999999993 4556778888887764
No 58
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.94 E-value=3.3e-26 Score=283.26 Aligned_cols=233 Identities=18% Similarity=0.183 Sum_probs=193.0
Q ss_pred HcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|+ +|...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 96 ~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~--------------- 160 (364)
T 3i12_A 96 LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT--------------- 160 (364)
T ss_dssp CCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred cCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 3578999999 699999999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHH----HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTE----EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~e----ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+++.+ ++.++++++|||+||||..|+||+||++|++.+|+.++++.+... +.+++||+|++| +|+
T Consensus 161 --------~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 229 (364)
T 3i12_A 161 --------LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF--DHKVVVEQGIKG-REI 229 (364)
T ss_dssp --------EETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEE
T ss_pred --------EEccccchhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc--CCcEEEEcCcCC-eEE
Confidence 33333 566777889999999999999999999999999999999987654 468999999988 999
Q ss_pred eEEEEEcCCCCEEEeccc---ccccccccce------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 284 EVQLLCDQYGNVAALHSR---DCSVQRRHQK------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~R---dcsvqrr~qK------iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
+|.+++|+.+.+...... ++ ++....| .....|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 230 ~v~vl~~~~~~~~~~~ei~~~~~-~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 230 ECAVLGNDNPQASTCGEIVLNSE-FYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEESSSCEEEEEEEEECCTT-CC--TTTTSGGGGCEEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEeCCCceEeeeEEEecCCC-ccCHHHcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 999999876444443321 11 2222222 23345776 8899999999999999999999999999999984
Q ss_pred cCCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 355 ETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 355 ~~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|+|||++.. .|.....+|+|++++..++
T Consensus 308 -~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~l 346 (364)
T 3i12_A 308 -DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRL 346 (364)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred -CCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHH
Confidence 6889999999988754 2554567899999876554
No 59
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=99.94 E-value=1.8e-26 Score=274.17 Aligned_cols=191 Identities=18% Similarity=0.191 Sum_probs=163.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc------------------------ccceEEEEEEEECCeEEEEEE
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG------------------------WARTVVTGRARLGGIPVGIVA 1913 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~------------------------~a~~vVtG~arl~G~pVgViA 1913 (2267)
.++++|++|+. |||+|||+|+... ++++||||+|+|+|+||+|++
T Consensus 59 ~r~~arerI~~-----------L~D~gsF~El~~~~~~~~~l~f~~y~~~l~~~~~~t~~~~avVtG~g~I~G~~V~v~a 127 (285)
T 2f9i_B 59 IALTAYKRIEA-----------ISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAV 127 (285)
T ss_dssp CCCCHHHHHHH-----------TSCTTCCEEESTTCEECCTTCCTTHHHHHHHHHHHHCCSSSEEEEEEEETTEEEEEEE
T ss_pred CCCCHHHHHHH-----------HccCCCcEEECCCcCcCCcccccchhHHHHHHhhccCCCCeEEEEEEEECCEEEEEEE
Confidence 67999999997 8999999999876 789999999999999999999
Q ss_pred EeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHH
Q 000092 1914 VETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGS 1991 (2267)
Q Consensus 1914 ~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga 1991 (2267)
+|++++ ||++++.+++|++|+++.|+++++|||+|+|++|+ .|++|+++ .++
T Consensus 128 ~d~~~~---------------------gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsgGa-----r~qEGi~sl~q~a 181 (285)
T 2f9i_B 128 MDSRFR---------------------MGSMGSVIGEKICRIIDYCTENRLPFILFSASGGA-----RMQEGIISLMQMG 181 (285)
T ss_dssp ECTTTG---------------------GGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECSC-----CGGGHHHHHHHHH
T ss_pred Eccccc---------------------cCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc-----chhhhhhhHhHHH
Confidence 998766 89999999999999999999999999999999996 46778775 445
Q ss_pred H---HHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchH
Q 000092 1992 T---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ 2068 (2267)
Q Consensus 1992 ~---iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~ 2068 (2267)
+ .+.+++++++|+|++|+ |+++||+...+. ..+|+ ++|||+|++||+||+++..+.+++-
T Consensus 182 ki~~~l~~~s~~~vP~Isvv~--g~~~GG~~as~a--~~~D~--i~a~p~A~i~~aGP~vi~~~~~~~~----------- 244 (285)
T 2f9i_B 182 KTSVSLKRHSDAGLLYISYLT--HPTTGGVSASFA--SVGDI--NLSEPKALIGFAGRRVIEQTINEKL----------- 244 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGG--GCCSE--EEECTTCBEESSCHHHHHHHHTSCC-----------
T ss_pred HHHHHHHHHHcCCCCEEEEEe--CCccHHHHHHhh--hCCCE--EEEeCCcEEEEcCHHHHHHHhcccc-----------
Confidence 5 67778888999999999 888998866553 35788 9999999999999999876653211
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHH
Q 000092 2069 KLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2148 (2267)
Q Consensus 2069 ~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~ 2148 (2267)
| +.+.+|..+.++|+||.||+++++|..+...|.
T Consensus 245 ------------------------------------~----------e~~~~Ae~~~~~G~iD~Iv~~~e~r~~l~~~L~ 278 (285)
T 2f9i_B 245 ------------------------------------P----------DDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILK 278 (285)
T ss_dssp ------------------------------------C----------TTTTBHHHHHHTTCCSEECCGGGHHHHHHHHHH
T ss_pred ------------------------------------h----------HhHhhHHHHHhcCCccEEeChHHHHHHHHHHHH
Confidence 0 112357788899999999999999998887775
No 60
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.94 E-value=3.1e-26 Score=275.91 Aligned_cols=270 Identities=19% Similarity=0.233 Sum_probs=202.1
Q ss_pred EEEEECch---------HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCH
Q 000092 50 SILIANNG---------MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 50 kVLIan~G---------~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dv 120 (2267)
||+|+-+| ..+..+++++++.||+++ .. |.+....
T Consensus 5 ~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~-----------~i--~~~~~~~----------------------- 48 (307)
T 3r5x_A 5 RIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIV-----------PI--TLNEKMD----------------------- 48 (307)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEE-----------EE--ECSSGGG-----------------------
T ss_pred EEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEE-----------EE--cccCchh-----------------------
Confidence 67777665 457889999999998875 23 2110000
Q ss_pred HHHHHHHHHcCCCEEEeCCCc-CCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCC
Q 000092 121 QLIVEMAEMTRVDAVWPGWGH-ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP 199 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~G~-~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~ 199 (2267)
+ +.+..++|.|+++... ..|+..+...|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 49 --~--~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~------- 117 (307)
T 3r5x_A 49 --L--IEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIE------- 117 (307)
T ss_dssp --H--HHHTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------
T ss_pred --H--HHhccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE-------
Confidence 0 1223578999998643 237777888999999999999999999999999999999999999999875
Q ss_pred CCcccccCcccccccccCCHHHHHH-HHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000092 200 ESCLVTIPDDVYRQACVYTTEEAIA-SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2267)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~-~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~ 278 (2267)
+.+.+++.. +++.+|||+||||..|+||+||++|++.+++.++++.+... +.+++||+|++
T Consensus 118 ----------------~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvee~i~ 179 (307)
T 3r5x_A 118 ----------------LTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIK 179 (307)
T ss_dssp ----------------EESSSCCCHHHHHHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH--CSEEEEEECCC
T ss_pred ----------------EeChhhhhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEECCcC
Confidence 222222222 56789999999999999999999999999999999887654 56899999999
Q ss_pred ccceeeEEEEEcCCCCEEEecccccccc--cccceE----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQ--RRHQKI----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 279 g~rhieVqvl~D~~G~vi~l~~Rdcsvq--rr~qKi----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
| +|++|.++. |+++.+....+..+ ....|. ....|+. ++++..+++.+.+.++++++|+.|.+++||++
T Consensus 180 G-~e~~v~v~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~ 254 (307)
T 3r5x_A 180 G-EEITCSIFD---GKQLPIISIRHAAEFFDYNAKYDDASTIEEVIE-LPAELKERVNKASLACYKALKCSVYARVDMMV 254 (307)
T ss_dssp S-EEEEEEEET---TEECCCEEEEEEEEEETTEEEEEEEEEEEEECC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred C-EEEEEEEEC---CEEeeEEEEEcCCcccChhhcCCCCCCeEecCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 7 899999863 34432222222111 223333 2223664 88999999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
+ +|++||||+|||++... |.....+|+|+.++..++.
T Consensus 255 ~--~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll 295 (307)
T 3r5x_A 255 K--DGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMII 295 (307)
T ss_dssp E--TTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred E--CCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHH
Confidence 9 68999999999998542 4456678999988776653
No 61
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.94 E-value=1.7e-26 Score=283.35 Aligned_cols=232 Identities=20% Similarity=0.274 Sum_probs=184.3
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|.. |...|+..+...++..|++++|++++++..+.||..++++++++|||+|+|..
T Consensus 88 ~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 152 (343)
T 1e4e_A 88 INHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWV--------------- 152 (343)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEE---------------
T ss_pred cccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEE---------------
Confidence 35789999985 45567888889999999999999999999999999999999999999999865
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+.+.+++. .+++|||+||||..|+||+||++|++.+|+.++++.+... +.+++||+||+| +|++|.+
T Consensus 153 --------~~~~~~~~--~~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~lvEe~I~G-~E~~v~v 219 (343)
T 1e4e_A 153 --------INKDDRPV--AATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY--DSKILIEQAVSG-CEVGCAV 219 (343)
T ss_dssp --------ECTTCCCC--GGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT--CSSEEEEECCCS-EEEEEEE
T ss_pred --------Eechhhhh--hhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEEeCcCC-eEEEEEE
Confidence 22222211 1578999999999999999999999999999999887542 568999999986 8999999
Q ss_pred EEcCCCCEEEec--cccc--ccccccce---------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 288 LCDQYGNVAALH--SRDC--SVQRRHQK---------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 288 l~D~~G~vi~l~--~Rdc--svqrr~qK---------iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
++++.+ +..+. ...+ .+.....| .....|+. ++++..+++.+.|.++++++|+.|.++|||++++
T Consensus 220 l~~~~~-~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 297 (343)
T 1e4e_A 220 LGNSAA-LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD 297 (343)
T ss_dssp EEETTC-CEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT
T ss_pred EeCCCC-eEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC
Confidence 998755 32221 1111 01111111 22345766 8889999999999999999999999999999984
Q ss_pred cCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 355 ETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 355 ~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
+|++||+|+|||++... |....++|+|+.++..++.
T Consensus 298 -~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 298 -NGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred -CCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 78899999999998752 4455567999988876653
No 62
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=99.93 E-value=1.9e-26 Score=273.99 Aligned_cols=186 Identities=17% Similarity=0.257 Sum_probs=158.7
Q ss_pred cCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCC
Q 000092 1572 GTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSG 1651 (2267)
Q Consensus 1572 ~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssG 1651 (2267)
..+|.+.++..|.++ +||+|.+++ +|++|+|++||++|++||+|+.+++|+.|++++|.+.++|+|+|.||+|
T Consensus 95 ~~~l~~~~~~t~~~~-avVtG~g~I------~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsgG 167 (285)
T 2f9i_B 95 LEKIEKDQQKTGLKE-AVVTGTAQL------DGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGG 167 (285)
T ss_dssp HHHHHHHHHHHCCSS-SEEEEEEEE------TTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred hHHHHHHhhccCCCC-eEEEEEEEE------CCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 334444444455555 599999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccc
Q 000092 1652 ARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGA 1731 (2267)
Q Consensus 1652 ARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~ 1731 (2267)
|||| |++.+++||+ +.+ ....++ +.
T Consensus 168 ar~q--EGi~sl~q~a--------ki~-------~~l~~~-----------------------------------s~--- 192 (285)
T 2f9i_B 168 ARMQ--EGIISLMQMG--------KTS-------VSLKRH-----------------------------------SD--- 192 (285)
T ss_dssp CCGG--GHHHHHHHHH--------HHH-------HHHHHH-----------------------------------HH---
T ss_pred cchh--hhhhhHhHHH--------HHH-------HHHHHH-----------------------------------Hc---
Confidence 9998 9999998877 111 111111 00
Q ss_pred ccccccccccCceEEEEEcCcccchhhhh-hccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCce
Q 000092 1732 IAGAYSRAYKETFTLTYVTGRTVGIGAYL-ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVV 1810 (2267)
Q Consensus 1732 iag~~s~a~~~iptis~vtg~~~G~gAyl-~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~ 1810 (2267)
..+|+|+++||+|+||++|. +.++|+++|.+++.|+++||+++++++|+++ ++++|++++|..+|++
T Consensus 193 ---------~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~vi~~~~~~~~---~e~~~~Ae~~~~~G~i 260 (285)
T 2f9i_B 193 ---------AGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKL---PDDFQTAEFLLEHGQL 260 (285)
T ss_dssp ---------TTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHHHHHHTTCC
T ss_pred ---------CCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHHHHHHhcccc---hHhHhhHHHHHhcCCc
Confidence 13799999999999998666 7899999999999999999999999999988 7999999999999999
Q ss_pred EEEecCcHHHHHHHHHHHhcCC
Q 000092 1811 HLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1811 d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|.+++++ +..+.++++|+|+.
T Consensus 261 D~Iv~~~-e~r~~l~~~L~~l~ 281 (285)
T 2f9i_B 261 DKVVHRN-DMRQTLSEILKIHQ 281 (285)
T ss_dssp SEECCGG-GHHHHHHHHHHHTC
T ss_pred cEEeChH-HHHHHHHHHHHHhh
Confidence 9999855 99999999999984
No 63
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.93 E-value=3.9e-26 Score=280.56 Aligned_cols=232 Identities=17% Similarity=0.212 Sum_probs=185.0
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+.++|.|+|.. |...|+..+...|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 88 ~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 152 (346)
T 3se7_A 88 TIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWT--------------- 152 (346)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEE---------------
T ss_pred ccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE---------------
Confidence 45789999987 78889999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+++.+ ...++.+|||+||||..|+||+||++|++.+|+.++++.+... +.+++||+|++| +|++|.+
T Consensus 153 --------~~~~~--~~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G-~E~~v~v 219 (346)
T 3se7_A 153 --------VTADE--KIPTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY--DSKVLIEEAVIG-TEIGCAV 219 (346)
T ss_dssp --------EETTS--CCCTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT--CSEEEEEECCCS-EEEEEEE
T ss_pred --------EcCcH--HHHHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC--CCcEEEEeCcCC-EEEEEEE
Confidence 11211 2345679999999999999999999999999999999987643 568999999986 8999999
Q ss_pred EEcCCCCEE-Eecccccc------cccccceEE-----EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEcc
Q 000092 288 LCDQYGNVA-ALHSRDCS------VQRRHQKII-----EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2267)
Q Consensus 288 l~D~~G~vi-~l~~Rdcs------vqrr~qKii-----eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~ 355 (2267)
++++.+..+ .+....+. .|++..|.. ...|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 220 l~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~- 297 (346)
T 3se7_A 220 MGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTE- 297 (346)
T ss_dssp EEETTEEEECCCEEECCC--------------CGGGSCEESSCC-CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECT-
T ss_pred EecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeC-
Confidence 998654222 22121111 233334433 235776 8899999999999999999999999999999984
Q ss_pred CCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|+|||++.. .|....++|+|+.++..++
T Consensus 298 ~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~l 336 (346)
T 3se7_A 298 DGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRL 336 (346)
T ss_dssp TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 5789999999998853 2444557899999876554
No 64
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.93 E-value=5.2e-25 Score=273.14 Aligned_cols=233 Identities=16% Similarity=0.152 Sum_probs=183.1
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|+|+|.. |...|+..++..|+..||+++|+++.++..+.||..++++++++|||+|+|..
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~---------------- 160 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHT---------------- 160 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEE----------------
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEE----------------
Confidence 5789999986 67779999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCHH----HHHHHHhhhCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 209 DVYRQACVYTTE----EAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 209 ~~~~~~~V~s~e----ea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+.+ .+..+++++||| +||||..|+||+||.+|++.+||.++++.+... +.+++||+||+| +|+
T Consensus 161 -------~~~~~~~~~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~ 230 (372)
T 3tqt_A 161 -------LSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY--DDRLMVEPRIRG-REI 230 (372)
T ss_dssp -------ECTTSCCTTHHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCS-EEE
T ss_pred -------EechhhhhhHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEECCCCC-EEE
Confidence 12211 244567789999 999999999999999999999999999887643 568999999986 999
Q ss_pred eEEEEEcCCCCEEEeccc-----ccccccccc--e-EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEcc
Q 000092 284 EVQLLCDQYGNVAALHSR-----DCSVQRRHQ--K-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~R-----dcsvqrr~q--K-iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~ 355 (2267)
+|.+++|+...+....+. -+..+.++. . .....|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 231 ~v~vl~~~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~- 308 (372)
T 3tqt_A 231 ECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTP- 308 (372)
T ss_dssp EEEEEESSSCEECCCEEEECC---------------CEEESCCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred EEEEEeCCCceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeC-
Confidence 999999863211111111 011221111 1 23456776 8999999999999999999999999999999984
Q ss_pred CCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|||||++-. .|....++|+|++++..++
T Consensus 309 dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 309 NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHH
Confidence 6889999999999844 3555567899998876554
No 65
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.93 E-value=6e-25 Score=273.49 Aligned_cols=235 Identities=17% Similarity=0.196 Sum_probs=181.7
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcC-CCCCCCCCCCccCCCCCcccccCc
Q 000092 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAAN-VPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 131 ~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aG-VPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++|.|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++| ||+|+|... ..
T Consensus 119 ~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~-------------~~ 185 (383)
T 3k3p_A 119 EEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVAL-------------IE 185 (383)
T ss_dssp TTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEE-------------ET
T ss_pred CCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEE-------------eC
Confidence 789999965 566699999999999999999999999999999999999999999 999998750 00
Q ss_pred ccccccccCCH-HHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 209 DVYRQACVYTT-EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 209 ~~~~~~~V~s~-eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
..+. +++.++++.+||||||||..|+||+||++|++.+||.++++.+... +..++||+||+| +|++|.+
T Consensus 186 -------~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~--~~~vlVEe~I~G-~E~~v~v 255 (383)
T 3k3p_A 186 -------GEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY--DSRVLIEQGVDA-REIEVGI 255 (383)
T ss_dssp -------TSCHHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEEEEEE
T ss_pred -------ccchhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeEEEEcCCCC-eEEEEEE
Confidence 1122 5677788899999999999999999999999999999999987754 468999999986 8999999
Q ss_pred EEcCCCCEEEeccc--ccccccccceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 288 LCDQYGNVAALHSR--DCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 288 l~D~~G~vi~l~~R--dcsvqrr~qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
++|+...+....++ ++.+.....|. ....|+. ++++..+++.+.|.++++++|++|.++|||++++ +|++|
T Consensus 256 l~d~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-~g~~~ 333 (383)
T 3k3p_A 256 LGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVY 333 (383)
T ss_dssp EESSSCEECCCEEEC-----------------CEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEE
T ss_pred EeCCCeeEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEEC-CCCEE
Confidence 99854333222221 12222222332 3456877 8999999999999999999999999999999984 68899
Q ss_pred EeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 361 FLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 361 fLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
|+|+|||++.. .|.....+|+|+.++..++
T Consensus 334 vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~l 367 (383)
T 3k3p_A 334 LNELNTMPGFTQWSMYPLLWENMGLSYSVLIEEL 367 (383)
T ss_dssp EEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 99999999843 3555567899998876654
No 66
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.92 E-value=2.2e-25 Score=276.71 Aligned_cols=230 Identities=19% Similarity=0.266 Sum_probs=187.2
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 131 ~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
++|.|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~----------------- 171 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAV----------------- 171 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEE-----------------
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE-----------------
Confidence 699999998 78889999999999999999999999999999999999999999999999875
Q ss_pred cccccccCCHHH--HHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 210 VYRQACVYTTEE--AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 210 ~~~~~~V~s~ee--a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+.+.++ ....++++|||+||||..|+||+||++|++.+||.++++.+... +.+++||+||+| +|++|.+
T Consensus 172 ------~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~~v~v 242 (373)
T 3lwb_A 172 ------LRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH--DPKVIVEAAISG-RELECGV 242 (373)
T ss_dssp ------ECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT--CSSEEEEECCEE-EEEEEEE
T ss_pred ------EECcccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEeCCCCC-eEEEEEE
Confidence 122111 12236789999999999999999999999999999999988754 568999999986 8999999
Q ss_pred EEcCCCC--EEEecccccc--------cccccceEE-----EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 288 LCDQYGN--VAALHSRDCS--------VQRRHQKII-----EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 288 l~D~~G~--vi~l~~Rdcs--------vqrr~qKii-----eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
++++.+. +....+..+. +.+...|.. ...|+. +++++.+++++.|.++++++|++|.++|||++
T Consensus 243 l~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~ 321 (373)
T 3lwb_A 243 LEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK-VDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 321 (373)
T ss_dssp EECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred EECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEE
Confidence 9998663 3222222222 333333332 235776 89999999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHH
Q 000092 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~ 389 (2267)
++ +|. ||+|||||++... |....++|+|++++..+
T Consensus 322 ~~-dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~ 360 (373)
T 3lwb_A 322 TD-DGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLAT 360 (373)
T ss_dssp ET-TEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHH
T ss_pred EC-CCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 94 567 9999999998542 44445789998776544
No 67
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.92 E-value=4.9e-25 Score=268.34 Aligned_cols=231 Identities=22% Similarity=0.261 Sum_probs=189.3
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|+. |...|+..+...|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 138 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVA--------------- 138 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 56799999987 77889888999999999999999999999999999999999999999999865
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+.+.++ +.. ++|||+||||..|+||+|+.+|++.+|+.++++.+... +.+++||+|++|.+|++|.+
T Consensus 139 --------~~~~~~--~~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~~v~v 205 (322)
T 2fb9_A 139 --------VRKGEP--PVV-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFRY--DEKAVVEKALSPVRELEVGV 205 (322)
T ss_dssp --------EETTSC--CCC-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCSSCEEEEEEE
T ss_pred --------EECchh--hhh-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCeEEEEeCCCCCeeEEEEE
Confidence 111111 112 68999999999999999999999999999999887643 46899999998768999999
Q ss_pred EEcCCCCEEEecccc--cccccccceEEE-----ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 288 LCDQYGNVAALHSRD--CSVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 288 l~D~~G~vi~l~~Rd--csvqrr~qKiie-----eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
++++.++++...... +.+.+...|... ..|+. ++++..+++++.|.++++++|+.|.++|||+++ +|++|
T Consensus 206 l~~~~~~~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~--~g~~~ 282 (322)
T 2fb9_A 206 LGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFLA--EGELY 282 (322)
T ss_dssp ESSSSCEEEEEEEEEEECCEEETTTEEECCEEEEESSCC-CCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE--TTEEE
T ss_pred EeCCCceEeeeEEEeeCCCccCHHHcccCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE--CCcEE
Confidence 988765555444332 223344444432 35776 788899999999999999999999999999998 78999
Q ss_pred EeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 361 FLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 361 fLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
|+|+|||++... |....++|+|++++..++
T Consensus 283 vlEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 316 (322)
T 2fb9_A 283 LNELNTIPGFTPTSMYPRLFEAGGVAYPELLRRL 316 (322)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEEECCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 999999998752 333457899988886654
No 68
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.92 E-value=4.6e-25 Score=260.78 Aligned_cols=270 Identities=14% Similarity=0.151 Sum_probs=193.0
Q ss_pred EEEECc--hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 51 ILIANN--GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 51 VLIan~--G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
|+|++. +..+..++++++++|++++ +. |.+.... ..+|. + ..
T Consensus 2 I~il~~~~~~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~--~~~~~------------~---------~~ 45 (280)
T 1uc8_A 2 LAILYDRIRPDERMLFERAEALGLPYK-----------KV--YVPALPM--VLGER------------P---------KE 45 (280)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTCCEE-----------EE--EGGGCCE--ETTBC------------C---------GG
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCcEE-----------EE--ehhhcee--eccCC------------C---------cc
Confidence 677774 6788899999999999985 22 2111111 12221 1 11
Q ss_pred HcCCC-EEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVD-AVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vD-aV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++| ++++.+|.. ++..++..+++.|+++++ +++++..+.||..++++++++|||+|+|..
T Consensus 46 ~~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~--------------- 108 (280)
T 1uc8_A 46 LEGVTVALERCVSQS-RGLAAARYLTALGIPVVN-RPEVIEACGDKWATSVALAKAGLPQPKTAL--------------- 108 (280)
T ss_dssp GTTCCEEEECCSSHH-HHHHHHHHHHHTTCCEES-CHHHHHHHHBHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred cCCCCEEEECCccch-hhHHHHHHHHHCCCceeC-CHHHHHHhCCHHHHHHHHHHcCcCCCCeEe---------------
Confidence 24689 788876622 455677888889999985 599999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH--HhhCCCCcEEEEEeccc-cceee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV--QGEVPGSPIFIMKVASQ-SRHLE 284 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~--~~e~~~~~I~VEeyI~g-~rhie 284 (2267)
+.+.+++.++++++|||+|+||..|+||+||+++++.+++.++++.+ .......++++|+|+++ +++++
T Consensus 109 --------~~~~~~~~~~~~~~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~ 180 (280)
T 1uc8_A 109 --------ATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIR 180 (280)
T ss_dssp --------ESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEE
T ss_pred --------eCCHHHHHHHHHHhCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEE
Confidence 67888998889999999999999999999999999999999988776 22223568999999997 56777
Q ss_pred EEEEEcCCCCEEEeccccccccccc-ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRH-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~-qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
+.++. |.++....|...-.+.+ ...-...|.. ++ +++.+.+.++++++|+ |.+++||++++ +++||+|
T Consensus 181 v~v~~---~~~~~~~~~~~~~~~~~~~~g~~~~p~~-l~----~~~~~~~~~~~~~lg~-g~~~vD~~~~~--~g~~~iE 249 (280)
T 1uc8_A 181 VFVVG---ERAIAAIYRRSAHWITNTARGGQAENCP-LT----EEVARLSVKAAEAVGG-GVVAVDLFESE--RGLLVNE 249 (280)
T ss_dssp EEEET---TEEEEEEEC--------------CEECC-CC----HHHHHHHHHHHHHTTC-SEEEEEEEEET--TEEEEEE
T ss_pred EEEEC---CEEEEEEEEecCCccccccCCccccCCC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEeC--CCeEEEE
Confidence 77663 44544332210000000 0000112433 33 3889999999999999 99999999994 3599999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCC
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~ 394 (2267)
+|||++..+ ++..+|+|++++.+++++|.
T Consensus 250 iN~r~g~~~--~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 250 VNHTMEFKN--SVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp EETTCCCTT--HHHHHCCCHHHHHHHHHHHT
T ss_pred EeCCCCccc--hheeeccCHHHHHHHHHHhh
Confidence 999998765 57789999999999998874
No 69
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=99.92 E-value=1.4e-25 Score=269.25 Aligned_cols=223 Identities=17% Similarity=0.194 Sum_probs=173.7
Q ss_pred HhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCC---------CCCCcCcccccccCCCCCcee
Q 000092 1518 LARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADD---------SGTWGTPLVLVERSPGLNNIG 1588 (2267)
Q Consensus 1518 ~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~---------~g~~~~~l~~~~r~~g~n~~g 1588 (2267)
.++..+..++.|.+++| .. .-+|.|+.-+.. +..|..+|.+.++.+|.+++
T Consensus 48 ~~~~~~r~~arerI~~L----------------~D---~gsF~E~~~~~~~~~~~~f~d~~~y~~~l~~~~~~t~~~~a- 107 (304)
T 2f9y_B 48 KCDHHMRMTARNRLHSL----------------LD---EGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDA- 107 (304)
T ss_dssp TTCCBCCCCHHHHHHHH----------------SC---SSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSS-
T ss_pred CCCCCCCCCHHHHHHHH----------------CC---CCcEEEECCccccCCccccccccChHHHHHHHHhccCCCCc-
Confidence 46777777777777777 11 225666643210 13466678888888887665
Q ss_pred EEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccccc
Q 000092 1589 MVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGW 1668 (2267)
Q Consensus 1589 mv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v~w 1668 (2267)
||+|.+++ +|++|+|++||+||++||||+...+|+.+++++|.+.++|+|+|.++|||||+ |++.++++++
T Consensus 108 vvtG~g~i------~G~~V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~~~PvI~l~~sGGarlq--eg~~~l~~~~- 178 (304)
T 2f9y_B 108 LVVMKGTL------YGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQ--EALMSLMQMA- 178 (304)
T ss_dssp EEEEECEE------TTEECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCGG--GTHHHHHHHH-
T ss_pred EEEEEEEE------CCEEEEEEEEcCccccCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCCCcCHH--HHHHHHHHHH-
Confidence 99999877 99999999999999999999999999999999999999999999999999998 6654443222
Q ss_pred cCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEEEE
Q 000092 1669 TDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTY 1748 (2267)
Q Consensus 1669 ~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~iptis~ 1748 (2267)
++...+. .++ -..+|+|++
T Consensus 179 ---------------------~i~~al~----------------------------~~~------------~~~vP~Iav 197 (304)
T 2f9y_B 179 ---------------------KTSAALA----------------------------KMQ------------ERGLPYISV 197 (304)
T ss_dssp ---------------------HHHHHHH----------------------------HHH------------HTTCCEEEE
T ss_pred ---------------------HHHHHHH----------------------------HHh------------cCCCCEEEE
Confidence 2110000 000 113799999
Q ss_pred EcCcccchh-hhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCceEEEecCcHHHHHHHHHH
Q 000092 1749 VTGRTVGIG-AYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1749 vtg~~~G~g-Ayl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
|+|+|+||| +.++.+||++||.+++.|+++||+++.+++|+++ .+++|+++.+..+|++|.++++ .+..+.++++
T Consensus 198 V~G~~~GGg~a~~a~~~D~via~~~A~i~v~Gp~~i~~~ig~~l---~~~~~~Ae~~~~~Glvd~Vv~~-~el~~~l~~l 273 (304)
T 2f9y_B 198 LTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PPGFQRSEFLIEKGAIDMIVRR-PEMRLKLASI 273 (304)
T ss_dssp EEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHHHHGGGTCCSEECCH-HHHHHHHHHH
T ss_pred EECCCccHHHHHHHhcCCEEEEeCCcEEEeecHHHHHHHhCccC---CcccCCHHHHHhcCCccEEeCc-HHHHHHHHHH
Confidence 999999999 4458889999999999999999999999999987 4899999999999999999964 6899999999
Q ss_pred HhcCCCC
Q 000092 1828 LSYVPPH 1834 (2267)
Q Consensus 1828 LsylP~~ 1834 (2267)
|+|+|..
T Consensus 274 l~~l~~~ 280 (304)
T 2f9y_B 274 LAKLMNL 280 (304)
T ss_dssp HHHHTTC
T ss_pred HHHhhcC
Confidence 9999863
No 70
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.91 E-value=1.4e-23 Score=254.78 Aligned_cols=260 Identities=12% Similarity=0.090 Sum_probs=182.8
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~---~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.||||+|+| .+..++++++++|++++ ++ |.+.+.+ ....+|+.+.++. |.+ +.
T Consensus 3 m~Ililg~g-~~~~l~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~------~~d-~~--- 58 (334)
T 2r85_A 3 VRIATYASH-SALQILKGAKDEGFETI-----------AF--GSSKVKPLYTKYFPVADYFIEEK------YPE-EE--- 58 (334)
T ss_dssp SEEEEESST-THHHHHHHHHHTTCCEE-----------EE--SCGGGHHHHHTTSCCCSEEECSS------CCH-HH---
T ss_pred eEEEEECCh-hHHHHHHHHHhCCCEEE-----------EE--ECCCCCcccccccccCceEecCC------cCh-HH---
Confidence 389999999 99999999999999986 34 2222223 4557788877642 323 22
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+++ .+|.|+|+.++... ...+.|++.|++++ |+++++..+.||..++++++++|||+|+| .
T Consensus 59 l~~--~~d~i~~~~e~~~~--~~~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~-~------------- 119 (334)
T 2r85_A 59 LLN--LNAVVVPTGSFVAH--LGIELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV-Y------------- 119 (334)
T ss_dssp HHH--TTEEECCCTTHHHH--HCHHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB-C-------------
T ss_pred hcc--cCCEEEECcchhhh--hHHHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc-c-------------
Confidence 232 35888877332211 12345677899876 56799999999999999999999999997 3
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh---CCCCcEEEEEeccccce
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE---VPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e---~~~~~I~VEeyI~g~rh 282 (2267)
.+. +.++||+||||..|+||+||++|++.+|+..+++.+... ....+++||+|++| .+
T Consensus 120 -----------~~~-------~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e 180 (334)
T 2r85_A 120 -----------EDP-------DDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VP 180 (334)
T ss_dssp -----------SCG-------GGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EE
T ss_pred -----------CCh-------HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ce
Confidence 111 135799999999999999999999999999999887643 12468999999988 57
Q ss_pred eeEEEEEcCCCC-EEEe--ccc-------ccccc--ccc----ceEEEec---CCCCCCHHHHHHHHHHHHHHHHHc---
Q 000092 283 LEVQLLCDQYGN-VAAL--HSR-------DCSVQ--RRH----QKIIEEG---PITVAPLETVKKLEQAARRLAKCV--- 340 (2267)
Q Consensus 283 ieVqvl~D~~G~-vi~l--~~R-------dcsvq--rr~----qKiieea---Pa~~l~~e~~~eL~~~A~rla~aL--- 340 (2267)
+++.++.+..++ +-.+ .+| .|... +.. ....... |+. ++++..+++.+.+.++++++
T Consensus 181 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~-l~~~~~~~i~~~a~~~~~~l~~~ 259 (334)
T 2r85_A 181 VYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIV-LRESLLMDVIEAGERVVKAAEEL 259 (334)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECC-CCGGGHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcCceeeeeeeccEEEeccCcccccccccccccccCCceeeeCCCCcc-cCHHHHHHHHHHHHHHHHHHHhh
Confidence 787776653332 1111 111 01000 000 0001112 665 77888899999999999999
Q ss_pred --CceeeeEEEEEEEccCCcEEEeeeCccCcCCc
Q 000092 341 --NYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2267)
Q Consensus 341 --Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2267)
++.|.+++||++++ +|++||+|+|||+++..
T Consensus 260 ~~~~~G~~~vd~~~~~-~g~~~viEiN~R~g~~~ 292 (334)
T 2r85_A 260 MGGLWGPFCLEGVFTP-DLEFVVFEISARIVAGT 292 (334)
T ss_dssp SSCCCEEEEEEEEECT-TSCEEEEEEECSCCGGG
T ss_pred cccccccEEEEEEECC-CCCEEEEEEeCCcCCCc
Confidence 89999999999983 67899999999999854
No 71
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.90 E-value=1.8e-23 Score=259.08 Aligned_cols=232 Identities=14% Similarity=0.142 Sum_probs=182.7
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 131 ~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
++|+|+|.. |...|+..++..|+..|++++|++++++..+.||..++++++++|||+|+|..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~----------------- 169 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVL----------------- 169 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEE-----------------
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEE-----------------
Confidence 689999975 55678888999999999999999999999999999999999999999999865
Q ss_pred cccccccCCHH--HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee-EE
Q 000092 210 VYRQACVYTTE--EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE-VQ 286 (2267)
Q Consensus 210 ~~~~~~V~s~e--ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhie-Vq 286 (2267)
+.+.+ ++.+ ++.+|||+||||..|+||+|+.+|++.+||.++++.+... +.+++||+|++|.+|++ +.
T Consensus 170 ------~~~~~~~~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~--~~~vlVEe~I~G~~E~svi~ 240 (367)
T 2pvp_A 170 ------LNEKNRANALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY--SKEVLIEPFIQGVKEYNLAG 240 (367)
T ss_dssp ------ECTTTGGGHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT--CSCEEEEECCTTCEEEEEEE
T ss_pred ------EeCCchHHHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeCCCCCceeeEEE
Confidence 23333 5555 6789999999999999999999999999999999887643 56899999998768955 44
Q ss_pred EEEcCCCCEEEeccccc---ccccccceEEE-----ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCc
Q 000092 287 LLCDQYGNVAALHSRDC---SVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdc---svqrr~qKiie-----eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~ 358 (2267)
+..+ |+++....+-. .+.....|... ..|+. ++++..+++++.|.++++++|+.|.++|||+++ +|+
T Consensus 241 v~v~--g~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~g~ 315 (367)
T 2pvp_A 241 CKIK--KDFCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--ENE 315 (367)
T ss_dssp EEET--TEEEEEEEEETTTTEEECCCCSSCCSCCCSCCCCC-CCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--TTE
T ss_pred EEEC--CEEEEEEEEEecCCceEcccccccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--CCe
Confidence 4443 55443322111 11122233322 34665 889999999999999999999999999999998 789
Q ss_pred EEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+||+|+|||++.+. .+ +.. |++++..++..+.++.
T Consensus 316 ~~vlEiN~rpg~t~-~s-~~p--~~~~l~~~li~~~~~~ 350 (367)
T 2pvp_A 316 VYLNEINPIPGSLA-NY-LFD--DFKTTLENLAQSLPKT 350 (367)
T ss_dssp EEEEEEESSCGGGG-GG-GSS--SHHHHHHHHHHHCC--
T ss_pred EEEEEEeCCCCCCc-cc-ccC--CHHHHHHHHHhCcccc
Confidence 99999999998742 11 112 8999999988886664
No 72
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.89 E-value=1.2e-22 Score=250.57 Aligned_cols=279 Identities=13% Similarity=0.175 Sum_probs=192.8
Q ss_pred hHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccC
Q 000092 34 EVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPG 110 (2267)
Q Consensus 34 ~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~---~vr~ADe~v~vp~ 110 (2267)
.+.++++...-.+ .+|+|+|+| .+..++++++++||+|+ ++ |.+.+++ ....||+++.++
T Consensus 6 ~~~~~~~~~~~~~--~~I~ilGs~-l~~~l~~aAk~lG~~vi-----------~v--d~~~~~p~~~~~~~ad~~~~~d- 68 (361)
T 2r7k_A 6 EILEIFDKYNKDE--ITIATLGSH-TSLHILKGAKLEGFSTV-----------CI--TMKGRDVPYKRFKVADKFIYVD- 68 (361)
T ss_dssp HHHHHHTTSCTTS--CEEEEESST-THHHHHHHHHHTTCCEE-----------EE--ECTTSCHHHHHTTCCSEEEECS-
T ss_pred HHHHHHHhccccC--CEEEEECcH-HHHHHHHHHHHCCCEEE-----------EE--ECCCCCCcccccccCceEEECC-
Confidence 3456665533222 359999999 89999999999999986 44 3334455 677899999884
Q ss_pred CCCCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCc--hHHHHH-HcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCC
Q 000092 111 GTNNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPE--LPDTLS-TKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185 (2267)
Q Consensus 111 ~~~~~~Y~dv--d~Il~iA~~~~vDaV~pG~G~~sEn~~--la~~l~-~~GI~fiGPs~eam~~lgDK~~~k~laq~aGV 185 (2267)
.|.|. +.+++.+++.+ +.|.|- + +... ....++ +.|++++| +..+++..+||..++++++++||
T Consensus 69 -----~~~d~~~~~~l~~l~~~~-~vV~pe--~--~~v~~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GI 137 (361)
T 2r7k_A 69 -----NFSDIKNEEIQEKLRELN-SIVVPH--G--SFIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGL 137 (361)
T ss_dssp -----SGGGGGSHHHHHHHHHTT-EEECCB--H--HHHHHHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTC
T ss_pred -----CcccccHHHHHHHHHHcC-CEEEeC--c--hhhhHHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCc
Confidence 35452 55556655554 554432 1 1111 112334 78998886 88999999999999999999999
Q ss_pred CCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh
Q 000092 186 PTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE 265 (2267)
Q Consensus 186 Ptpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e 265 (2267)
|||+|.. +.++ ++||+||||..++||||+++|+|.+|+.++++.+...
T Consensus 138 ptp~~~~-------------------------~~~e-------~~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~ 185 (361)
T 2r7k_A 138 RVPKKYE-------------------------SPED-------IDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKR 185 (361)
T ss_dssp CCCCEES-------------------------SGGG-------CCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHT
T ss_pred CCCCEeC-------------------------CHHH-------cCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc
Confidence 9998632 2222 2699999999999999999999999999999877532
Q ss_pred C-----CCCcEEEEEeccccceeeEEEEEcCCCC---EEEeccc-----c--cccccccc--------eEE-EecCCCCC
Q 000092 266 V-----PGSPIFIMKVASQSRHLEVQLLCDQYGN---VAALHSR-----D--CSVQRRHQ--------KII-EEGPITVA 321 (2267)
Q Consensus 266 ~-----~~~~I~VEeyI~g~rhieVqvl~D~~G~---vi~l~~R-----d--csvqrr~q--------Kii-eeaPa~~l 321 (2267)
. .+.+++||+|++|. ++++..+..--.+ ++.+..| | |.+..+.| .++ ...|+. +
T Consensus 186 ~~~~~~~~~~viIEEfl~G~-e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~-l 263 (361)
T 2r7k_A 186 GILTDEDIANAHIEEYVVGT-NFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV-I 263 (361)
T ss_dssp TSCCHHHHHHCEEEECCCSE-EEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC-C
T ss_pred cccccCCCCeEEEEeccceE-EeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEEecCcCCc-C
Confidence 1 12479999999984 5576555542222 2222111 1 10100001 111 122776 7
Q ss_pred CHHHHHHHHHHHHHHHHHc------CceeeeEEEEEEEccCCcEEEeeeCccCcCCccee
Q 000092 322 PLETVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVT 375 (2267)
Q Consensus 322 ~~e~~~eL~~~A~rla~aL------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvt 375 (2267)
++++.+++.+.+.++++++ |+.|+.++||++++ +|+++|+|||||++|..++.
T Consensus 264 ~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg~i~V~EIapR~gGg~~~~ 322 (361)
T 2r7k_A 264 RESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NLELVVFEMSARVDGGTNSF 322 (361)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TSCEEEEEEESSBCGGGGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CCCEEEEEEcCCCCCCcccc
Confidence 8888999999999999999 89999999999983 67899999999999984433
No 73
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.86 E-value=2.2e-21 Score=234.67 Aligned_cols=217 Identities=17% Similarity=0.111 Sum_probs=163.2
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~ 193 (2267)
++| .+.+.+++++ +|.+++. +|.......+.+.++..| .++|+++++++.+.||..+++++++ |||+|+|..
T Consensus 57 ~df--~~~l~~~~~~--~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~- 129 (305)
T 3df7_A 57 VDS--MDSMEKYLEK--SDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL- 129 (305)
T ss_dssp BCC--GGGHHHHHTT--CSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-
T ss_pred cCH--HHHHHHHHHh--cCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-
Confidence 355 4567777754 5776654 222222222345555567 7999999999999999999999999 999999653
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEE
Q 000092 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFI 273 (2267)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~V 273 (2267)
..++||+|+||..|+||+||+++++ .+.++++
T Consensus 130 ---------------------------------~~~~~P~vvKP~~g~gs~Gv~~v~~---------------~~~~~lv 161 (305)
T 3df7_A 130 ---------------------------------RPLDCKFIIKPRTACAGEGIGFSDE---------------VPDGHIA 161 (305)
T ss_dssp ---------------------------------SCCSSSEEEEESSCC----CBCCSS---------------CCTTEEE
T ss_pred ---------------------------------ccCCCCEEEEeCCCCCCCCEEEEec---------------CCCCEEE
Confidence 2478999999999999999999998 3568999
Q ss_pred EEeccccceeeEEEEEcCCCCEEEeccccccccccc-ceE-EEecCCCCCCHHHHHHHHHHHHHHHHHc-CceeeeEEEE
Q 000092 274 MKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH-QKI-IEEGPITVAPLETVKKLEQAARRLAKCV-NYVGAATVEY 350 (2267)
Q Consensus 274 EeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~-qKi-ieeaPa~~l~~e~~~eL~~~A~rla~aL-Gy~Ga~tVEf 350 (2267)
|+|++| +|++|.+++++ .+..+... .+... .+. ....|+. ++++..+++.+.|.++++++ |+.|.+++||
T Consensus 162 Ee~I~G-~e~sv~v~~g~--~~~~~~~~---~~~~~~~~~~g~~~p~~-l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~ 234 (305)
T 3df7_A 162 QEFIEG-INLSVSLAVGE--DVKCLSVN---EQIINNFRYAGAVVPAR-ISDEVKREVVEEAVRAVECVEGLNGYVGVDI 234 (305)
T ss_dssp EECCCS-EEEEEEEEESS--SEEEEEEE---EEEEETTEEEEEEESCC-CCHHHHHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred EeccCC-cEEEEEEEeCC--eEEEEEEe---eEeccCceeccccccCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEE
Confidence 999986 89999999853 44433211 11111 111 2245665 78899999999999999999 9999999999
Q ss_pred EEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 351 LYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
+++ |++||+|+|||+++++...+.++|+|+.++++++ +.+.+.
T Consensus 235 ~~~---~~~~viEiNpR~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~ 277 (305)
T 3df7_A 235 VYS---DQPYVIEINARLTTPVVAFSRAYGASVADLLAGG--EVKHVR 277 (305)
T ss_dssp EES---SSEEEEEEESSCCGGGGGHHHHHSCCHHHHHTTC--CCCCCC
T ss_pred EEC---CCEEEEEEcCCCCCCHHHHHHHHCCCHHHHHHhc--cCCCCc
Confidence 995 6799999999999998777889999999999988 554444
No 74
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.85 E-value=4.3e-22 Score=241.48 Aligned_cols=249 Identities=10% Similarity=0.109 Sum_probs=169.1
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~---~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+|.|+|+| .|+.++++|+++|++|+ ++ |.+.+++ ....||+++.++. |.| +
T Consensus 4 ~I~~lGsg-l~~~~~~aAk~lG~~vi-----------v~--d~~~~~p~~~a~~~ad~~~~~~~------~~d------l 57 (320)
T 2pbz_A 4 IVSTIASH-SSLQILLGAKKEGFKTR-----------LY--VSPKRRPFYSSLPIVDDLVVAEE------MTS------I 57 (320)
T ss_dssp CEEEESST-THHHHHHHHHHTTCCEE-----------EE--ECTTTHHHHHTCTTCSEEEECSC------SCC------T
T ss_pred EEEEEcCH-hHHHHHHHHHHCCCEEE-----------EE--ECCCCCccchhhhcCCeEEECCc------HHH------H
Confidence 49999999 99999999999999996 44 4445555 7789999998842 444 2
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
+ ...|.|.|-..+... ...+.|++.|+++. |+.+++....||...+++++++|||+|+|..
T Consensus 58 ~--~~~dvitpe~e~v~~--~~l~~le~~~~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~-------------- 118 (320)
T 2pbz_A 58 L--NDDGIVVPHGSFVAY--LGIEAIEKAKARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVVE-------------- 118 (320)
T ss_dssp T--CCSSBCCCBTTHHHH--SCHHHHHTCCSCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC--------------
T ss_pred H--hcCCEEEecccchhH--HHHHHHHHcCCCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC--------------
Confidence 2 234777655332211 12345677888765 7889999999999999999999999999753
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
+++ + +++|||||||..|+||||+++++| +|+..+++.+. .+++||+|++|.+. .+.
T Consensus 119 ~ee------------~-----~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~-----~~~IiEEfI~g~~~-~~~ 174 (320)
T 2pbz_A 119 PED------------A-----KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTLE-----EPYRVERFIPGVYL-YVH 174 (320)
T ss_dssp SCC------------C-----CSSCCEEEECC------------C-EECSCCCC---------CCEEEECCCSCEE-EEE
T ss_pred HhH------------c-----CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcC-----CCEEEEeeeceEec-cee
Confidence 111 1 489999999999999999999999 99987665441 47999999998654 666
Q ss_pred EEEc-CCCCEEEecccccccccccc----------eEEEecCCCCCCHHHHHHHHHHHHHHHHHc------CceeeeEEE
Q 000092 287 LLCD-QYGNVAALHSRDCSVQRRHQ----------KIIEEGPITVAPLETVKKLEQAARRLAKCV------NYVGAATVE 349 (2267)
Q Consensus 287 vl~D-~~G~vi~l~~Rdcsvqrr~q----------KiieeaPa~~l~~e~~~eL~~~A~rla~aL------Gy~Ga~tVE 349 (2267)
++.+ -.|++..++.++....+... -+....|+. +++++.+++.+.+.++++++ |+.|+.+||
T Consensus 175 ~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~~~~~~~G~~P~~-~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE 253 (320)
T 2pbz_A 175 FFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAIA-LRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH 253 (320)
T ss_dssp EEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEEECE-ECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE
T ss_pred EEeccccCceeEEEecceEEEECCeeecccCCCceeeecCCCCc-cCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE
Confidence 6655 34555444333211001110 011112665 67778899999999999999 999999999
Q ss_pred EEEEccCCcEEEeeeCccCcCC
Q 000092 350 YLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqge 371 (2267)
++ +++++||+|||||++|+
T Consensus 254 --~~-~dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 254 --FA-YDGSFKAIGIASRIDGG 272 (320)
T ss_dssp --EE-CSSSCEEEEEESSBCSG
T ss_pred --Ec-CCCcEEEEEecCCCCCC
Confidence 45 36789999999999887
No 75
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=99.81 E-value=6.9e-20 Score=220.11 Aligned_cols=197 Identities=18% Similarity=0.139 Sum_probs=155.5
Q ss_pred ccCCC----CCCChHHHhcccccCCCCcccccccCCCceecccc---------------------------ccceEEEEE
Q 000092 1853 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------------------WARTVVTGR 1901 (2267)
Q Consensus 1853 ~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------------------~a~~vVtG~ 1901 (2267)
.++|. .++++|++|+. |||+|||.|+... ++++||||+
T Consensus 44 ~v~~~~~~~~r~~arerI~~-----------L~D~gsF~E~~~~~~~~~~~~f~d~~~y~~~l~~~~~~t~~~~avvtG~ 112 (304)
T 2f9y_B 44 EVCPKCDHHMRMTARNRLHS-----------LLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMK 112 (304)
T ss_dssp TBCTTTCCBCCCCHHHHHHH-----------HSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHH-----------HCCCCcEEEECCccccCCccccccccChHHHHHHHHhccCCCCcEEEEE
Confidence 45653 78899999997 8999999999763 569999999
Q ss_pred EEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhh
Q 000092 1902 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 1981 (2267)
Q Consensus 1902 arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~ 1981 (2267)
|+|+|+||+|+++|++++ ||++++..++|++|+++.|.++++|+|+|.|++|+..
T Consensus 113 g~i~G~~V~v~a~d~~~~---------------------ggslg~~~~~Ki~r~~e~A~~~~~PvI~l~~sGGarl---- 167 (304)
T 2f9y_B 113 GTLYGMPVVAAAFEFAFM---------------------GGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARM---- 167 (304)
T ss_dssp CEETTEECBEEEECTTST---------------------TTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCG----
T ss_pred EEECCEEEEEEEEcCccc---------------------cCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCCCcCH----
Confidence 999999999999998876 8999999999999999999999999999999999655
Q ss_pred hhhch--HHHHHHHHHHHh---cCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcch
Q 000092 1982 LFEGI--LQAGSTIVENLR---TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2056 (2267)
Q Consensus 1982 e~~gi--lk~ga~iv~al~---~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~ 2056 (2267)
++++ +..+++++.++. +..+|+|++|. |.+.||+...++. ..|+ ++|+|+|++++++|+.+..+..+.
T Consensus 168 -qeg~~~l~~~~~i~~al~~~~~~~vP~IavV~--G~~~GGg~a~~a~--~~D~--via~~~A~i~v~Gp~~i~~~ig~~ 240 (304)
T 2f9y_B 168 -QEALMSLMQMAKTSAALAKMQERGLPYISVLT--DPTMGGVSASFAM--LGDL--NIAEPKALIGFAGPRVIEQTVREK 240 (304)
T ss_dssp -GGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGGG--CCSE--EEECTTCBEESSCHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE--CCCccHHHHHHHh--cCCE--EEEeCCcEEEeecHHHHHHHhCcc
Confidence 3332 335677777774 45999999998 7888887433221 2488 999999999999997775443211
Q ss_pred hhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2057 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2057 ~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
.+ +...++..+.+.|+||.|++.
T Consensus 241 ---------------------------l~------------------------------~~~~~Ae~~~~~Glvd~Vv~~ 263 (304)
T 2f9y_B 241 ---------------------------LP------------------------------PGFQRSEFLIEKGAIDMIVRR 263 (304)
T ss_dssp ---------------------------CC------------------------------TTTTBHHHHGGGTCCSEECCH
T ss_pred ---------------------------CC------------------------------cccCCHHHHHhcCCccEEeCc
Confidence 00 012367888899999999999
Q ss_pred cchHHHHHHHHHH
Q 000092 2137 DKSRSFFCRRLRR 2149 (2267)
Q Consensus 2137 ~~~R~~~~~~L~r 2149 (2267)
+++|..+...|+.
T Consensus 264 ~el~~~l~~ll~~ 276 (304)
T 2f9y_B 264 PEMRLKLASILAK 276 (304)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877766544443
No 76
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.75 E-value=1.5e-18 Score=230.44 Aligned_cols=240 Identities=14% Similarity=0.055 Sum_probs=183.1
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEe-------CCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL-------GPPATSMAALGDKIGSSLIAQAANVPTLPW 190 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fi-------GPs~eam~~lgDK~~~k~laq~aGVPtpp~ 190 (2267)
.+.+.|+++|++.++|+++.| ++..|.+.+...++.++ ||+..++..++||..+|++++++|||||+|
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg-----~e~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~ 507 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILD-----ENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQS 507 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-----TTTTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCE
T ss_pred CCHHHHHHHHHHhCCCEEEEC-----CCHHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCE
Confidence 468899999999999999755 55556655555555554 456799999999999999999999999998
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHH-hhhCCcEEEeecCCCCCcCeEEE----CCHHHHHHHHHHHHhh
Q 000092 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKV----HNDDEVRALFKQVQGE 265 (2267)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V----~s~eEL~~a~~~~~~e 265 (2267)
.. +.+.+++.+.+ +.+||||||||..|+||+||+++ ++.+++.++++.+...
T Consensus 508 ~~-----------------------~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~ 564 (757)
T 3ln7_A 508 VE-----------------------FTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE 564 (757)
T ss_dssp EE-----------------------ESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH
T ss_pred EE-----------------------ECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc
Confidence 76 67888887776 78999999999999999999999 8999999999887754
Q ss_pred CCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccc-c------------------ccc---cc-------------
Q 000092 266 VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS-V------------------QRR---HQ------------- 310 (2267)
Q Consensus 266 ~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcs-v------------------qrr---~q------------- 310 (2267)
+..++||+|++| +|++|.+++ |.++....|... + .+| |.
T Consensus 565 --~~~vlVEefI~G-~Ei~v~Vlg---gkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~ 638 (757)
T 3ln7_A 565 --DKEVMVEDYLVG-TEYRFFVLG---DETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQ 638 (757)
T ss_dssp --CSSEEEEECCCS-EEEEEEEET---TEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHH
T ss_pred --CCcEEEEEcCCC-cEEEEEEEC---CEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHH
Confidence 568999999987 899999985 467766555321 0 011 00
Q ss_pred ------------------eEE--------EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc-------cCC
Q 000092 311 ------------------KII--------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-------ETG 357 (2267)
Q Consensus 311 ------------------Kii--------eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~-------~~g 357 (2267)
++. ..+-+...+.++.+++.+.|.++++++|+. .+.||++.+. +.+
T Consensus 639 ~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~ 717 (757)
T 3ln7_A 639 LQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLT 717 (757)
T ss_dssp HHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTT
T ss_pred HHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCC
Confidence 000 001112234456678999999999999985 7889999862 235
Q ss_pred cEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHc
Q 000092 358 EYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 358 ~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~ 392 (2267)
++.+||+|++++-. |...-..+|.|+....+....
T Consensus 718 ~~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~lf 753 (757)
T 3ln7_A 718 SWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKMLF 753 (757)
T ss_dssp TCEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHHC
T ss_pred CeEEEEEcCCcchhhhhccccCCCCchHHHHHHHhc
Confidence 78999999999854 332223578999999888765
No 77
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.73 E-value=1e-17 Score=201.09 Aligned_cols=284 Identities=11% Similarity=0.053 Sum_probs=178.7
Q ss_pred EEEEECch--------HHHHHHHHHHHHcCCcccccccceeEEEEEe-ccCCCCCChhhhhccE-EEEccCCCCCCCccC
Q 000092 50 SILIANNG--------MAAVKFIRSIRTWAYETFGTEKAILLVAMAT-PEDMRINAEHIRIADQ-FVEVPGGTNNNNYAN 119 (2267)
Q Consensus 50 kVLIan~G--------~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t-~~D~~~~a~~vr~ADe-~v~vp~~~~~~~Y~d 119 (2267)
||+|+..| ..+..++++++++||+++ .+ +.+.... .....++. .+.+++ ....|..
T Consensus 3 ~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~-----------~~d~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 68 (316)
T 1gsa_A 3 KLGIVMDPIANINIKKDSSFAMLLEAQRRGYELH-----------YMEMGDLYLI-NGEARAHTRTLNVKQ--NYEEWFS 68 (316)
T ss_dssp EEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEE-----------EECGGGEEEE-TTEEEEEEEEEEECS--CSSCCEE
T ss_pred eEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEE-----------EEchhHeEEE-CCeEEEEEeeeEecc--Cccccee
Confidence 67777766 356889999999999986 33 2111100 00001221 222321 1112211
Q ss_pred --HHHHHHHHHHcCCCEEEeCCCcCCC-----CCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCC
Q 000092 120 --VQLIVEMAEMTRVDAVWPGWGHASE-----IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2267)
Q Consensus 120 --vd~Il~iA~~~~vDaV~pG~G~~sE-----n~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~ 192 (2267)
.+.++ ...++|+|++..+...+ ...+.+.++..|++++ ++++++..+.||..++++++ |+|+|..
T Consensus 69 ~~~~~~~---~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~~ 140 (316)
T 1gsa_A 69 FVGEQDL---PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETLV 140 (316)
T ss_dssp EEEEEEE---EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEEE
T ss_pred ccCcccc---ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeEE
Confidence 00011 11368999986543211 1134566667898876 78999999999999999988 9999765
Q ss_pred CCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEEC-CHHHHHHHHHHHHhhCCCCcE
Q 000092 193 SHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVH-NDDEVRALFKQVQGEVPGSPI 271 (2267)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~-s~eEL~~a~~~~~~e~~~~~I 271 (2267)
+.+.+++.++++++| |+|+||..|+||+||++++ +.+++..+++.... ....++
T Consensus 141 -----------------------~~~~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-~~~~~~ 195 (316)
T 1gsa_A 141 -----------------------TRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-HGTRYC 195 (316)
T ss_dssp -----------------------ESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-TTTSCE
T ss_pred -----------------------eCCHHHHHHHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-cCCceE
Confidence 678889988888899 9999999999999999998 88899888776532 223689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEE-ecccccc-c-cccc-ceEEEecCCCCCCHHHHHHHHHHHHHHHHH---cCcee
Q 000092 272 FIMKVASQSRHLEVQLLCDQYGNVAA-LHSRDCS-V-QRRH-QKIIEEGPITVAPLETVKKLEQAARRLAKC---VNYVG 344 (2267)
Q Consensus 272 ~VEeyI~g~rhieVqvl~D~~G~vi~-l~~Rdcs-v-qrr~-qKiieeaPa~~l~~e~~~eL~~~A~rla~a---LGy~G 344 (2267)
++|+|+++.+++++.++..+ |+++. ...|... . .+.+ .......|.. +++ ++.+.+.+++++ +|+ +
T Consensus 196 lvqe~i~~~~~~~~~v~~~~-g~~~~~~~~r~~~~~~~~~~~~~gg~~~~~~-~~~----~~~~~a~~~~~~l~~~g~-~ 268 (316)
T 1gsa_A 196 MAQNYLPAIKDGDKRVLVVD-GEPVPYCLARIPQGGETRGNLAAGGRGEPRP-LTE----SDWKIARQIGPTLKEKGL-I 268 (316)
T ss_dssp EEEECCGGGGGCEEEEEEET-TEECSEEEEEECCSSCSCCCGGGTCEEEEEE-CCH----HHHHHHHHHHHHHHHTTC-C
T ss_pred EEecccCCCCCCCEEEEEEC-CEEeeeEEEEeCCCCCceeEEccCCccccCC-CCH----HHHHHHHHHHHHHHhCCC-c
Confidence 99999997334444444332 45443 2222100 0 0100 0000012332 333 345555555554 576 5
Q ss_pred eeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcC
Q 000092 345 AATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2267)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G 393 (2267)
.+.+||+ |. ||||+|||..++...++..+|+|+.++.+++..+
T Consensus 269 ~~~vD~~-----g~-~~iEvN~r~~~~~~~~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 269 FVGLDII-----GD-RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp EEEEEEE-----TT-EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEEEEec-----CC-EEEEEcCCCCcchHHHHHhhCcCHHHHHHHHHHH
Confidence 6779988 33 8999999976556666778999999999887654
No 78
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.67 E-value=3.6e-16 Score=189.61 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=143.5
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHH-----cCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 131 RVDAVWPGWGHASEIPELPDTLST-----KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 131 ~vDaV~pG~G~~sEn~~la~~l~~-----~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
.+|+|++..+. +...+...++. .|+.+ +++++++..+.||..++++++++|||+|+|..
T Consensus 55 ~~d~v~~~~~~--~~~~~~~~l~~~~~~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~------------- 118 (324)
T 1z2n_X 55 EPNAIITKRTH--PVGKMADEMRKYEKDHPKVLF-LESSAIHDMMSSREEINALLIKNNIPIPNSFS------------- 118 (324)
T ss_dssp CCSEEEECCSC--SSSHHHHHHHHHHHHCTTSEE-ETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEE-------------
T ss_pred CceEEEEeccc--hHHHHHHHHHHHHHhCCCCeE-eCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE-------------
Confidence 57889887533 22234555554 68876 48999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhh--CCcEEEeecCCCCC---cCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVV--GYPAMIKASWGGGG---KGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ- 279 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~I--GyPVVIKPs~GgGG---kGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g- 279 (2267)
+.+.+++.+++++. +||+|+||..|+|| +|+.++++.++|.. ...++++|+||++
T Consensus 119 ----------~~~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~---------~~~~~lvqe~i~~~ 179 (324)
T 1z2n_X 119 ----------VKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD---------IHFPCLCQHYINHN 179 (324)
T ss_dssp ----------ESSHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT---------CCSSEEEEECCCCT
T ss_pred ----------eCCHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh---------cCCCEEEEEccCCC
Confidence 66788888877774 49999999999999 99999999888653 1568999999985
Q ss_pred cceeeEEEEEcCCCCEEEecccccc--ccc----------------------------------ccce-EEEecCCCCCC
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCS--VQR----------------------------------RHQK-IIEEGPITVAP 322 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcs--vqr----------------------------------r~qK-iieeaPa~~l~ 322 (2267)
+++++|.+++ |.++... |... +.. .+.+ -+..++. .+
T Consensus 180 g~~~~v~v~g---~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~--~~ 253 (324)
T 1z2n_X 180 NKIVKVFCIG---NTLKWQT-RTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPI--LL 253 (324)
T ss_dssp TCEEEEEEET---TEEEEEE-ECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTT--TT
T ss_pred CcEEEEEEEC---CEEEEEE-ecCcccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCc--cc
Confidence 4677776663 3444432 2110 000 0000 0000111 12
Q ss_pred HHHH-HHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 323 LETV-KKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 323 ~e~~-~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
.... +++.+.|.++++++|+. .++|||++++++|++||||||||++..
T Consensus 254 ~~~~~~~i~~~a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 254 NLTSEAEMRDLAYKVRCALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp TSCCHHHHHHHHHHHHHHHTCS-EEEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred cCCCHHHHHHHHHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 2222 68999999999999996 788999997446889999999998754
No 79
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=99.64 E-value=1.7e-15 Score=183.76 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=146.5
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|...++..+..|..|+++.+ . + +|.|+ ++ +|..|. +.+||+|+
T Consensus 68 ~~~~~~~~~~r~~~re~I~~l----------------~---D--~f~El-----~~---------d~~~~~-d~~vV~G~ 111 (327)
T 2f9i_A 68 DRVQIARLQERPTTLDYIPYI----------------F---D--SFMEL-----HG---------DRNFRD-DPAMIGGI 111 (327)
T ss_dssp HHHHHHTBTTSCCHHHHHHHH----------------C---E--EEEEC-----CC---------CSSSCC-CTTEEEEE
T ss_pred hcccccCCCCCCCHHHHHHHh----------------c---c--ceEEe-----cC---------CCCcCc-ccceEEEE
Confidence 345678999999988877766 1 1 37776 23 122232 34699999
Q ss_pred EEecCccccCCcEEEEEEecccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T~--------~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +|++|+|++||.++ ++|++++...+|+.|++++|.+.++|+|+|.|++|+|+|.. .....+
T Consensus 112 gri------~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~PlI~lvdt~Ga~~g~~--ae~~g~ 183 (327)
T 2f9i_A 112 GFL------NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKA--AEERGQ 183 (327)
T ss_dssp EEE------TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCCHH--HHHTTH
T ss_pred EEE------CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCcchh--hhhhhh
Confidence 987 99999999999988 99999999999999999999999999999999999999943 322211
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
+. ...++ +. ++ +-..+|+
T Consensus 184 ~~-------------------~~a~~----------------------------------l~-------al--~~~~vPv 201 (327)
T 2f9i_A 184 SE-------------------SIATN----------------------------------LI-------EM--ASLKVPV 201 (327)
T ss_dssp HH-------------------HHHHH----------------------------------HH-------HH--HTCSSCE
T ss_pred HH-------------------HHHHH----------------------------------HH-------HH--HhCCCCE
Confidence 11 00000 00 00 0113799
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccc----cCCccccccccCceEEEecCc
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM----QLGGPKIMATNGVVHLTVSDD 1817 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~----~lGG~~i~~~nGv~d~~v~dd 1817 (2267)
|++|+|+|+||||+++.+||++||.+++.+.+.||...-..+-+.+-...+ ....++-+...|++|.+++..
T Consensus 202 IavV~G~a~GGGa~~~~~~D~via~~~A~~~v~~peg~a~il~~~~~~a~~A~e~~~itA~~a~~~GlVd~VV~ep 277 (327)
T 2f9i_A 202 IAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEP 277 (327)
T ss_dssp EEEEEEEEBHHHHHTTCCCSEEEEETTCBCBSSCHHHHHHHHSSCGGGHHHHHHHHTCBHHHHHHTTSSSEEECCC
T ss_pred EEEEECCcChHHHHHHHCCCEEEEcCCceEeecCchHHHHHHHHHhcchHHHHHHcCCCHHHHHHcCCceEEecCC
Confidence 999999999999999999999999999999999998877766554310011 334555667899999999743
No 80
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.64 E-value=1.1e-16 Score=213.32 Aligned_cols=243 Identities=15% Similarity=0.071 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHcCCCEEEeCCC--cCCCCCchHHHHHHcCCeEeCCCH-HHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 119 NVQLIVEMAEMTRVDAVWPGWG--HASEIPELPDTLSTKGIIFLGPPA-TSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 119 dvd~Il~iA~~~~vDaV~pG~G--~~sEn~~la~~l~~~GI~fiGPs~-eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
+.+.|+++|++.+++++..+.+ +..........+...|. ..|+++ .++..++||..+|++++++|||+|+|..
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~g~-itg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~--- 504 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGN-MTSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDE--- 504 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEETTT-BCTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCC---
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEecCC-eeCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEE---
Confidence 5789999999999999775532 22221111100100121 235544 4667778999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHH-hhhCCcEEEeecCCCCCcCeEEEC---CHHHHHHHHHHHHhhCCCCcE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKVH---NDDEVRALFKQVQGEVPGSPI 271 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V~---s~eEL~~a~~~~~~e~~~~~I 271 (2267)
+.+.+++.+++ +.+|||+||||..|++|+||++|+ +.+++.++++.+... +..+
T Consensus 505 --------------------~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~--~~~v 562 (750)
T 3ln6_A 505 --------------------FTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE--DSAI 562 (750)
T ss_dssp --------------------EETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH--CSEE
T ss_pred --------------------ECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh--CCcE
Confidence 55667777766 678999999999999999999999 999999999987654 5689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEeccccccc------------------c-cc---cceEEE---------------
Q 000092 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV------------------Q-RR---HQKIIE--------------- 314 (2267)
Q Consensus 272 ~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsv------------------q-rr---~qKiie--------------- 314 (2267)
+||+|++| +|++|.++++ .++....|.... . +| |.+..+
T Consensus 563 lVEefI~G-~E~~v~Vvgg---~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~ 638 (750)
T 3ln6_A 563 LVEEYIEG-TEYRFFVLEG---DCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQ 638 (750)
T ss_dssp EEEECCCS-EEEEEEEETT---EEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHT
T ss_pred EEEeccCC-CEEEEEEECC---EEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHc
Confidence 99999986 8999998853 566554442110 0 00 110000
Q ss_pred -----e-------------------cCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc-------cCCcEEEee
Q 000092 315 -----E-------------------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-------ETGEYYFLE 363 (2267)
Q Consensus 315 -----e-------------------aPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~-------~~g~~yfLE 363 (2267)
. +-+...+.++.+++.+.|+++++++|+. .+.||++.+. +.+++++||
T Consensus 639 g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiE 717 (750)
T 3ln6_A 639 GYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIE 717 (750)
T ss_dssp TCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEE
T ss_pred CCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEE
Confidence 0 0011123456678999999999999987 8889999872 245789999
Q ss_pred eCccCcCC-cceehhhhcCCHHHHHHHHHc
Q 000092 364 LNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 364 INpRlqge-hpvtE~vtGvDL~~~qL~iA~ 392 (2267)
+|++++-. |......+|.|+....+....
T Consensus 718 vN~~pg~~~h~~p~~g~~~~v~~~ii~~lf 747 (750)
T 3ln6_A 718 LNFNPLMYMHTYCQEGPGQSITPRILAKLF 747 (750)
T ss_dssp EESSCCCHHHHSCSBSCCCCCHHHHHHHHC
T ss_pred EcCCcchhhhcCcccCCCCcHHHHHHHHhC
Confidence 99999864 433334678999988887653
No 81
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.63 E-value=2.3e-16 Score=184.26 Aligned_cols=172 Identities=14% Similarity=0.189 Sum_probs=134.2
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCC-----CCCcC
Q 000092 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG-----GGGKG 245 (2267)
Q Consensus 171 gDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~G-----gGGkG 245 (2267)
.||..++++++++|||+|+|.. +++.+++.++++++|||||+||..+ ++|.|
T Consensus 20 l~k~~~k~ll~~~GIp~p~~~~-----------------------~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gG 76 (238)
T 1wr2_A 20 MVEYEAKQVLKAYGLPVPEEKL-----------------------AKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKV 76 (238)
T ss_dssp ECHHHHHHHHHTTTCCCCCCEE-----------------------ESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTC
T ss_pred CCHHHHHHHHHHcCcCCCCeEE-----------------------eCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCC
Confidence 4999999999999999999876 7789999999999999999999999 78889
Q ss_pred eEE-ECCHHHHHHHHHHHHhhCC-------CCcEEEEEeccccceeeEEEEEcC-CCCEEEecccccccccccceEEEec
Q 000092 246 IRK-VHNDDEVRALFKQVQGEVP-------GSPIFIMKVASQSRHLEVQLLCDQ-YGNVAALHSRDCSVQRRHQKIIEEG 316 (2267)
Q Consensus 246 Ir~-V~s~eEL~~a~~~~~~e~~-------~~~I~VEeyI~g~rhieVqvl~D~-~G~vi~l~~Rdcsvqrr~qKiieea 316 (2267)
+++ |+|.+++.++++++..... ...++||+|+++++|++|.++.|. .|.++.++.....+...+.......
T Consensus 77 v~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~ 156 (238)
T 1wr2_A 77 VMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLV 156 (238)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEES
T ss_pred EEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecC
Confidence 998 7999999999998775431 268999999998899999999998 6777665431111111111122223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEE------------EEEccCCc-EEEeeeCccCc
Q 000092 317 PITVAPLETVKKLEQAARRLAKCVNYVGAATVEY------------LYSMETGE-YYFLELNPRLQ 369 (2267)
Q Consensus 317 Pa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEf------------l~d~~~g~-~yfLEINpRlq 369 (2267)
| ++++..++|.+.+.++..++||+|...+++ ++.. .++ +++|||||++-
T Consensus 157 P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~-~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 157 P---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDD-LKDYIKEMDLNPVFV 218 (238)
T ss_dssp S---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHH-TTTTEEEEEEEEEEE
T ss_pred C---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHc-CCCCeEEEeccCeEE
Confidence 4 889999999999999999999999866653 1221 344 99999999874
No 82
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=99.62 E-value=2.9e-15 Score=192.94 Aligned_cols=160 Identities=18% Similarity=0.116 Sum_probs=122.3
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccccc--------cceEEEEEEEECCeEEEEEEEeccccccccCCCCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1929 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~--------a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~ 1929 (2267)
....+|++|+. |||+|||.|+...| +++||||+|+|+|+||.|+++|++++
T Consensus 59 gkltareRI~~-----------LlD~gsF~E~~~~y~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~t~~---------- 117 (587)
T 1pix_A 59 GELTALQRIEK-----------LVEPGSWRPLNTLFNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKL---------- 117 (587)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSCCSEEEEEEEETTEEEEEEEECTTTT----------
T ss_pred CCCCHHHHHHH-----------HcCCCCceEhhhhcchhhhcCCCCcEEEEEEEECCEEEEEEEECCccc----------
Confidence 45678999997 89999999998755 38999999999999999999998766
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhh----hchHHHHHHHHHHHhcCCCCEE
Q 000092 1930 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF----EGILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1930 p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~----~gilk~ga~iv~al~~~~vP~i 2005 (2267)
||+|++..++|+.|+++.|.++++|||+|+|++|...+...+. .++. ..+..+..++...+|+|
T Consensus 118 -----------gGs~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGArlqe~~~~l~~~~~~g-~i~~~~~~ls~~giP~I 185 (587)
T 1pix_A 118 -----------AGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGG-TPFFRNAELNQLGIPVI 185 (587)
T ss_dssp -----------TTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTT-HHHHHHHHHHHTTCCEE
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccchhccccccHH-HHHHHHHHHhCCCCCEE
Confidence 8999999999999999999999999999999999554433331 1222 23444555777889999
Q ss_pred EEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhh---hhcchh
Q 000092 2006 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIE---IKFRTK 2057 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~---I~~r~~ 2057 (2267)
++|. |++.||+... +. .|++ +.+.++|.+++.||+.+-. |.|.+.
T Consensus 186 svv~--G~~~GGga~~-a~---~d~v-im~e~~a~i~~~GP~vi~~~~~~~~~d~ 233 (587)
T 1pix_A 186 VGIY--GTNPAGGGYH-SI---SPTV-IIAHEKANMAVGGAGIMGGMNPKGHVDL 233 (587)
T ss_dssp EEEC--SEEETHHHHH-HH---SSSE-EEEETTCEEESCCCTTCCSCCSSSSCCH
T ss_pred EEEe--cCCcHHHHHH-Hh---cCce-EEecCCcEEEecCHHHHhhhccccccch
Confidence 9999 6666654333 32 2441 4556779999999954433 444444
No 83
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=99.62 E-value=1.7e-15 Score=184.12 Aligned_cols=196 Identities=16% Similarity=0.131 Sum_probs=144.8
Q ss_pred HHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEEE
Q 000092 1515 KRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCM 1594 (2267)
Q Consensus 1515 kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~~ 1594 (2267)
|...++..+++|..|+++.+ . + +|.|+ ++ ++..|. +.+||+|++
T Consensus 83 r~~~~r~~~rp~~re~I~~l----------------~---D--~f~El-----~g---------~~~~~~-d~avV~G~a 126 (339)
T 2f9y_A 83 IAQLARHPQRPYTLDYVRLA----------------F---D--EFDEL-----AG---------DRAYAD-DKAIVGGIA 126 (339)
T ss_dssp HHHHHTCTTCCCHHHHHHHH----------------C---E--EEEEC-----CC---------CSSSCC-CTTEEEEEE
T ss_pred hhcccCCCCCCCHHHHHHHH----------------c---c--ccEEc-----cC---------CcCCCC-CCcEEEEEE
Confidence 55779999999988877766 1 1 37777 23 122222 246999999
Q ss_pred EecCccccCCcEEEEEEeccc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1595 EMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1595 ~~~tp~~~~Gr~vvvianD~T--------~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
++ +|++|+|++||.. +++|++++...+|+.|++++|.+.++|+|+|.|++|+|+| ++.....++
T Consensus 127 ri------~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~lvDt~Ga~~g--~~aE~~g~~ 198 (339)
T 2f9y_A 127 RL------DGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPG--VGAEERGQS 198 (339)
T ss_dssp EE------TTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCS--HHHHHTTHH
T ss_pred EE------CCEEEEEEEEeCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCccc--hHHHHHHHH
Confidence 87 9999999999988 5999999999999999999999999999999999999999 433222111
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
. ...++ +. ++ +-..+|+|
T Consensus 199 ~-------------------~~a~~----------------------------------l~-------al--~~~~vPvI 216 (339)
T 2f9y_A 199 E-------------------AIARN----------------------------------LR-------EM--SRLGVPVV 216 (339)
T ss_dssp H-------------------HHHHH----------------------------------HH-------HH--HTCSSCEE
T ss_pred H-------------------HHHHH----------------------------------HH-------HH--HhCCCCEE
Confidence 1 00000 00 00 01137999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccc----cCCccccccccCceEEEecC
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM----QLGGPKIMATNGVVHLTVSD 1816 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~----~lGG~~i~~~nGv~d~~v~d 1816 (2267)
++|+|+|+||||+++.+||++||.+++.+.+.||......+-+..-..++ ..-.++-+...|++|.+++.
T Consensus 217 avV~G~a~GGGa~~~~~~D~via~p~A~~~v~~Peg~asil~~~~~~~~~Aae~~~itA~~a~~~GlVd~VV~e 290 (339)
T 2f9y_A 217 CTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSIIPE 290 (339)
T ss_dssp EEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSCSTTHHHHHHHHTCSHHHHHTTTSCSCCCCC
T ss_pred EEEeCCcCcHHHHHHhccCeeeecCCCEEEeeccchHHHHHHHhhccHHHHHHHcCCCHHHHHHcCCeeEEecC
Confidence 99999999999999999999999999999999998877766554300001 23344556789999999974
No 84
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=6.6e-16 Score=157.18 Aligned_cols=97 Identities=39% Similarity=0.652 Sum_probs=93.3
Q ss_pred EEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEE
Q 000092 673 LIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELI 751 (2267)
Q Consensus 673 ~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~L 751 (2267)
+++|++|.++...++..|.||++|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|. + +++|+.|.+|++|
T Consensus 3 ~~~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l 81 (100)
T 2dn8_A 3 SGSSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVV 81 (100)
T ss_dssp CCCCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEE
T ss_pred ccCCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999 7 9999999999999
Q ss_pred EEEecCCCCccccCCCCCC
Q 000092 752 ARLDLDDPSAVRKAEPFYG 770 (2267)
Q Consensus 752 a~l~~~~~~~v~~~~~f~g 770 (2267)
++|+..++..+..+.||+|
T Consensus 82 ~~i~~~~~~~v~~~~~~~~ 100 (100)
T 2dn8_A 82 ARLELDDPSKVHPSGPSSG 100 (100)
T ss_dssp EEECCSCSCCCCSCCCCCC
T ss_pred EEEEcCCccEEEeccccCC
Confidence 9999999999999999986
No 85
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=99.61 E-value=1.8e-15 Score=193.96 Aligned_cols=152 Identities=21% Similarity=0.236 Sum_probs=120.1
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccccc--------cceEEEEEEEECCeEEEEEEEeccccccccCCCCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1929 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~--------a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~ 1929 (2267)
....+|++|+. |||+|||.|+...| +++||||+|+|+|+||.|+++|++++
T Consensus 60 GkltaRERI~~-----------LlD~GSF~El~~~~~~~~~~~~~dgVVtG~G~I~Gr~V~V~a~D~tv~---------- 118 (588)
T 3gf3_A 60 GQLSAMQRINA-----------LIDPGTWCPLNSLFNPENNKFGTTNIVNGLGRVDGKWVYIVASDNKKM---------- 118 (588)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSSCSEEEEEEEETTEEEEEEEECTTSG----------
T ss_pred CCCCHHHHHHH-----------HcCCCceEEccccccccccCCCCCcEEEEEEEECCEEEEEEEECCccc----------
Confidence 45789999997 89999999998765 47999999999999999999998766
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHH---HhcCCCCEEE
Q 000092 1930 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN---LRTYKQPVFV 2006 (2267)
Q Consensus 1930 p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a---l~~~~vP~i~ 2006 (2267)
||++++..++|++|+++.|.++++|||+|+|++|+..+...+....+...++++.+ ++...+|+|+
T Consensus 119 -----------gGS~g~~~~~Ki~Ra~e~A~~~~lPvI~l~dSgGArl~~qe~~~~~l~~~g~if~~~~~ls~~~iP~Is 187 (588)
T 3gf3_A 119 -----------AGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIV 187 (588)
T ss_dssp -----------GGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEE
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcCcccccccccchhhHHHHHHHHHHHhcCCCCEEE
Confidence 89999999999999999999999999999999997765322110001222344444 5556899999
Q ss_pred EEccCCcCC-chhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2007 YIPMMAELR-GGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2007 vI~~~g~~~-GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|+ |++. ||+|.++. +++ ++++|+|.+++.||+-+
T Consensus 188 vv~--Gp~~gGgAy~a~~----~~v--im~~~~a~i~~aGP~vI 223 (588)
T 3gf3_A 188 GIY--GTNPAGGGYHSIS----PTI--LIAHQDANMAVGGAGIL 223 (588)
T ss_dssp EEC--SEEETHHHHHHHS----SSE--EEEETTCEEESSCCC--
T ss_pred EEe--CCCCchhhhHhhC----CeE--EEEECCcEEEecChhhh
Confidence 999 6554 45766443 466 78999999999999643
No 86
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=99.61 E-value=4.7e-15 Score=189.87 Aligned_cols=147 Identities=21% Similarity=0.188 Sum_probs=122.9
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||+|+|+|+||.|+++|++++
T Consensus 55 gkltareRi~~-----------LlD~gsF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~t~~--- 120 (548)
T 2bzr_A 55 GKLTARERIYA-----------LLDEDSFVELDALAKHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVF--- 120 (548)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCSTTGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCceEEeCCccccCCCccccccccCCCCcEEEEEEEECCEEEEEEEEcCccc---
Confidence 35689999997 8999999998642 358999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2000 (2267)
||++++..++|+.|+++.|.+.++|+|.|+|++| ..|++|+.. ..++++.++..+
T Consensus 121 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGG-----ARmqeg~~sl~~~~~i~~~~~~~ 177 (548)
T 2bzr_A 121 ------------------GGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAG-----ARIQEGVVSLGLYSRIFRNNILA 177 (548)
T ss_dssp ------------------GGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCS-----CCGGGTTHHHHHHHHHHHHHHHT
T ss_pred ------------------cCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCC-----CCchhHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999 455555543 557787777665
Q ss_pred C--CCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccc
Q 000092 2001 K--QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEG 2048 (2267)
Q Consensus 2001 ~--vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~peg 2048 (2267)
. +|+|++|+ |.+.||+....+ -.|+ ++|.|+ |.+++.||+-
T Consensus 178 s~~iP~Isvv~--gp~~GG~a~s~a---l~D~--ii~~~~~a~i~~aGP~v 221 (548)
T 2bzr_A 178 SGVIPQISLIM--GAAAGGHVYSPA---LTDF--VIMVDQTSQMFITGPDV 221 (548)
T ss_dssp TTTSCEEEEEC--SEEESGGGHHHH---HSSE--EEEETTTCEEESSCHHH
T ss_pred cCCCcEEEEec--CCCchHHHHHHH---hCCe--EEeccCceeEEeccHHH
Confidence 5 89999999 666666544443 2588 999997 9999999943
No 87
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=99.61 E-value=3.6e-15 Score=190.50 Aligned_cols=147 Identities=20% Similarity=0.186 Sum_probs=121.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||+|+|+|+||.|+++|++++
T Consensus 42 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~f~l~~~~~~~dgvvtG~G~I~Gr~v~v~a~D~t~~--- 107 (523)
T 1on3_A 42 GKQTARERLNN-----------LLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVM--- 107 (523)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCTTTTTTCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------hcCCCccEEeCCccccCCCccccccccCCCCcEEEEEEEECCEEEEEEEEcCCcc---
Confidence 45688999997 8999999998642 358999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2000 (2267)
||++++..++|+.|+++.|.+.++|+|+|+|++| ..|++|+.. ..++++.++..+
T Consensus 108 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGG-----ARmqeg~~sl~~~~~i~~~~~~~ 164 (523)
T 1on3_A 108 ------------------GGSAGETQSTKVVETMEQALLTGTPFLFFYDSGG-----ARIQEGIDSLSGYGKMFFANVKL 164 (523)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECS-----BCGGGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCC-----CChhhHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999998 556666543 557777765554
Q ss_pred --CCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccc
Q 000092 2001 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2001 --~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
.+|+|++|+ |.+.||+-.... -.|+ ++|.|+|.+++.||.-
T Consensus 165 s~~iP~Isvv~--gp~~GG~a~s~~---l~D~--ii~~~~a~i~~aGP~v 207 (523)
T 1on3_A 165 SGVVPQIAIIA--GPCAGGASYSPA---LTDF--IIMTKKAHMFITGPQV 207 (523)
T ss_dssp TTTSCEEEEEE--EEEESGGGHHHH---HSSE--EEEETTCEEESSCHHH
T ss_pred cCCCCEEEEEc--CCCchHHHHHHh---hCCe--EEEeCCCEEEecCHHH
Confidence 489999999 666665433332 2588 9999999999999953
No 88
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=99.60 E-value=4e-15 Score=190.23 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=118.8
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccc---------------cccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+.. ..+++||||+|+|+|+||.|+++|++++
T Consensus 45 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~i~Gr~v~v~a~D~t~~--- 110 (527)
T 1vrg_A 45 GKLTAWERLEL-----------LLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVM--- 110 (527)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCGGGGGGCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------HccCCceEEcccccccCCcccCcccccCCCCcEEEEEEEECCEEEEEEEEecccc---
Confidence 45789999997 899999999942 1348999999999999999999998876
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchH--HHHHHHHHHHh--
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVENLR-- 1998 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~al~-- 1998 (2267)
||++++..++|+.|+++.|.++++|+|+|+|++|... ++++. ...++++.++.
T Consensus 111 ------------------gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGAR~-----qeg~~~l~g~~~~~~~~~~~ 167 (527)
T 1vrg_A 111 ------------------GGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARI-----QEGVDALAGYGEIFLRNTLA 167 (527)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCG-----GGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CccccHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCc-----cchhHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999543 33332 23455544433
Q ss_pred cCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccch
Q 000092 1999 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2049 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~pega 2049 (2267)
...+|+|++|+ |++.||+....+. .|+ ++|.|+ |.+++.||+-+
T Consensus 168 s~~iP~Isvv~--Gp~~GG~a~s~al---~D~--vi~~~~~a~i~~aGP~vi 212 (527)
T 1vrg_A 168 SGVVPQITVIA--GPCAGGAVYSPAL---TDF--IVMVDQTARMFITGPNVI 212 (527)
T ss_dssp TTTSCEEEEEE--EEEBGGGGHHHHH---SSE--EEEETTTCBCBSSCHHHH
T ss_pred CCCCCEEEEEe--CCCchHHHHHHHc---CCe--EEEecCceEEEecCHHHH
Confidence 45599999999 7777765444442 587 999998 99999999543
No 89
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=99.59 E-value=7.1e-15 Score=187.92 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=121.0
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||.|+|+|+||.|+++|++++
T Consensus 38 g~l~areRi~~-----------LlD~gsf~E~~~~~~~~~~~f~~~~~~~~~dgvvtG~G~i~Gr~v~v~a~D~t~~--- 103 (522)
T 1x0u_A 38 GKLTARERLAL-----------LFDDGKFNEIMTFATTRATEFGLDKQRFYGDGVVTGWGKVDGRTVFAYAQDFTVL--- 103 (522)
T ss_dssp TCCCHHHHHHH-----------HSSSSCCEESSSSCCCCCCGGGTTTCCCTTTTEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------hccCCccEEeCCcccCCCCccccccccCCCCcEEEEEEEECCEEEEEEEecCcee---
Confidence 45688999997 8999999998642 358999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2000 (2267)
||++++..++|+.|+++.|.+.++|+|+|+|++| ..|++|+.. ..++++.++..+
T Consensus 104 ------------------gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~SGG-----aRmqeg~~sl~~~~~i~~~~~~~ 160 (522)
T 1x0u_A 104 ------------------GGSLGETHANKIVRAYELALKVGAPVVGINDSGG-----ARIQEGALSLEGYGAVFKMNVMA 160 (522)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCS-----BCGGGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CccccHHHHHHHHHHHHHHHHcCCCEEEEEcCCC-----CChhHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999998 556666543 556776665554
Q ss_pred --CCCEEEEEccCCcCCchhHhhhccccCCccceeecccc-c-EEEeeCccc
Q 000092 2001 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-A-KGNVLEPEG 2048 (2267)
Q Consensus 2001 --~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A-~~gvl~peg 2048 (2267)
.+|+|++|. |.+.||+-.... -.|+ ++|.|+ | .+++.||.-
T Consensus 161 s~~iP~Isvv~--gp~~GG~a~s~~---l~D~--~i~~~~~a~~i~~aGP~v 205 (522)
T 1x0u_A 161 SGVIPQITIMA--GPAAGGAVYSPA---LTDF--IIMIKGDAYYMFVTGPEI 205 (522)
T ss_dssp TTTSCEEEEEC--SEEEGGGGHHHH---HSSE--EEEECSTTCEEESSCHHH
T ss_pred CCCCcEEEEEc--CCCchHHHHHHh---cCCe--EEEecCCccEEEecCHHH
Confidence 489999999 666665433332 2588 999998 9 999999943
No 90
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=99.58 E-value=5.2e-15 Score=188.34 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=123.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccc---------------cccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+.. .++++||||+|+|+|+||+|+++|++++
T Consensus 44 gkl~aReRI~~-----------LlD~gSF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~tv~--- 109 (530)
T 3iav_A 44 GKLTARERIDL-----------LLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVF--- 109 (530)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCCeEEcCCccccCCCCcccccccCCCCcEEEEEEEECCEEEEEEEECCCcc---
Confidence 56889999997 899999999964 3468999999999999999999998877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchH--HHHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~al~~~ 2000 (2267)
||+|++..++|++|+++.|.+.++|||.|+|++|+ .|++|+. ...++++.+++.+
T Consensus 110 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGa-----RmqEg~~~l~~~~~i~~~~~~~ 166 (530)
T 3iav_A 110 ------------------GGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGA-----RIQEGVASLGAYGEIFRRNTHA 166 (530)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSB-----CGGGTHHHHHHHHHHHHHHHHT
T ss_pred ------------------eEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCc-----chhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 4555553 3567888877765
Q ss_pred C--CCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccch
Q 000092 2001 K--QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2049 (2267)
Q Consensus 2001 ~--vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~pega 2049 (2267)
+ +|+|++|. |.+.||+....+. .|+ ++|.++ |.+++.||.-+
T Consensus 167 s~~iP~Isvv~--G~~~GG~a~~~al---~D~--~im~~~~a~i~~aGP~vi 211 (530)
T 3iav_A 167 SGVIPQISLVV--GPCAGGAVYSPAI---TDF--TVMVDQTSHMFITGPDVI 211 (530)
T ss_dssp TTTSCEEEEEC--SEEEGGGGHHHHH---SSE--EEEETTTCEEESSCHHHH
T ss_pred cCCCCEEEEEe--cCcchHHHHHHHh---CCE--EEEecCCcEEEecCHHHH
Confidence 4 89999999 7777765554442 687 887664 99999999543
No 91
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=99.57 E-value=2.1e-14 Score=182.65 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=121.6
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||+|+|+|+||.|+++|++++
T Consensus 52 gkltaReRI~~-----------LlD~gSF~E~~~~~~~~~~~~~~~~~~~~~dgVVtG~G~I~Gr~v~v~a~D~t~~--- 117 (531)
T 3n6r_B 52 GKLTARERVDL-----------LLDEGSFEEFDMFVTHRCTDFNMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVL--- 117 (531)
T ss_dssp TCCCHHHHHHH-----------HSSSSCCEEECTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCceEEcCCccccCCcccccccccCCCCCEEEEEEEECCEEEEEEEECCCcc---
Confidence 45789999997 8999999998642 258899999999999999999998877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2000 (2267)
||++++..++|+.|+++.|.+.++|+|.|+|++| ..|++|+.. ..++++.++..+
T Consensus 118 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGG-----ARmqeg~~sl~~~~~i~~~~~~~ 174 (531)
T 3n6r_B 118 ------------------GGSVSETHSKKICKIMDMAMQNGAPVIGINDSGG-----ARIQEGVDSLAGYGEVFQRNIMA 174 (531)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCC-----BCGGGTHHHHHHHHHHHHHHHHT
T ss_pred ------------------cccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCc-----cccCcccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 455556543 457777765554
Q ss_pred --CCCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccc
Q 000092 2001 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEG 2048 (2267)
Q Consensus 2001 --~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~peg 2048 (2267)
.+|+|++|. |++.||+....+. .|+ ++|.++ |.+++.||+-
T Consensus 175 s~~iP~Isvv~--Gp~~GG~a~s~a~---~D~--vi~~~~~a~i~~aGP~v 218 (531)
T 3n6r_B 175 SGVVPQISMIM--GPCAGGAVYSPAM---TDF--IFMVKDSSYMFVTGPDV 218 (531)
T ss_dssp TTTSCEEEEEC--SCCBGGGGHHHHH---SSE--EEEETTTCBCBSSCHHH
T ss_pred hCCCCEEEEEe--CCcchHHHHHhhh---CCE--EEEecCCceEeecCHHH
Confidence 489999999 7777766555443 577 899885 9999999943
No 92
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=99.52 E-value=6.4e-14 Score=178.73 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=115.3
Q ss_pred CCCChHHHhcccccCCCCcccccccCCC-ceecccc----------ccceEEEEEEEECCeEEEEEEEeccccccccCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDS-FVETLEG----------WARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1926 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gS-F~E~~~~----------~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAd 1926 (2267)
....+|++|+. |||+|| |.|+... .+++||||+|+|+|+||.|+++|++++
T Consensus 72 gkltaReRI~~-----------LlD~gS~F~E~~~l~~~~~y~~~~~~dgVVtG~G~I~Gr~v~V~a~D~tv~------- 133 (555)
T 3u9r_B 72 GKLLVRERINR-----------LLDPGSPFLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVK------- 133 (555)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEEECTTTTTTTSSSCCGGGGEEEEEEEETTEEEEEEEECTTTG-------
T ss_pred CCCCHHHHHHH-----------HcCCCCCEEEEccccccccccccCCCCcEEEEEEEECCEEEEEEEECCccc-------
Confidence 45788999997 899999 9997431 257999999999999999999998766
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhh---chHHHHHHHHHHHhcCCCC
Q 000092 1927 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFE---GILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1927 pa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~---gilk~ga~iv~al~~~~vP 2003 (2267)
||++++..++|+.|+++.|.++++|+|+|+|++|...+...+.- +........+..++...+|
T Consensus 134 --------------gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSgGARl~~q~~~~~~~~~~~~i~~~~~~ls~~giP 199 (555)
T 3u9r_B 134 --------------GGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGIP 199 (555)
T ss_dssp --------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGGGGTSSSTTSTTHHHHHHHHHHHTTCC
T ss_pred --------------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcceeecccccHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999999999996544332211 1112233333445567899
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|++|. |++.||+....+ +..++ +.+.++|.+++.||+
T Consensus 200 ~Isvv~--G~~~GGga~~~a--~~d~v--im~e~~a~i~~aGP~ 237 (555)
T 3u9r_B 200 QIAVVM--GSCTAGGAYVPA--MSDET--VMVREQATIFLAGPP 237 (555)
T ss_dssp EEEEEC--SCCBGGGGHHHH--TSSEE--EEETTTCBCBSSCHH
T ss_pred EEEEEe--cCCCccHHHHHH--hCCce--EEecCCceEEEccHH
Confidence 999999 666665433332 22333 557889999999994
No 93
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.47 E-value=1.1e-12 Score=158.37 Aligned_cols=217 Identities=14% Similarity=0.084 Sum_probs=153.2
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHcCC---CCCCCCCCCccCC
Q 000092 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2267)
Q Consensus 131 ~vDaV~pG~G~~s--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~~k~laq~aGV---Ptpp~~~~~~~~~ 198 (2267)
..|+|++-.+... ++. .+...++..|++.+ ++++++..|+|| ..+.++++++|+ |.+|...
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~------ 140 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTY------ 140 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEe------
Confidence 4699998755433 222 23456778999998 999999999999 667788889998 8666432
Q ss_pred CCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000092 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2267)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~ 278 (2267)
..+.. +..+..|||+|+||..|++|+||.++++.+++++..+..... +..+++|+|++
T Consensus 141 -----------------~~~~~---~~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~--~~~~~vQefI~ 198 (309)
T 1i7n_A 141 -----------------YPNHR---EMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT--QTYATAEPFID 198 (309)
T ss_dssp -----------------ESSGG---GGSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred -----------------eCChh---hhhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeecC
Confidence 11111 234568999999999999999999999999999888765433 35789999999
Q ss_pred ccceeeEEEEEcCCCCEEEecccccccccccceE-EEec---CCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-IEEG---PITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 279 g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi-ieea---Pa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
.++.+.|.++++ ++++...|--+ .|.+. +..+ |.+ ++ +++++.|.++++++|--+.+.||++.+
T Consensus 199 ~g~DiRv~VvGg---~v~a~~Rr~~~---g~wrtN~~~~~~e~~~-l~----~e~~~la~~A~~a~gGldi~GVDll~~- 266 (309)
T 1i7n_A 199 AKYDIRVQKIGN---NYKAYMRTSIS---GNWKTNTGSAMLEQIA-MS----DRYKLWVDACSEMFGGLDICAVKAVHG- 266 (309)
T ss_dssp EEEEEEEEEETT---EEEEEEEESSC---TTTSCSCCCSSEEEEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-
T ss_pred CCceEEEEEECC---EEEEEEEEcCC---CCCeecCCcceeeecC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-
Confidence 888999998865 45554322101 11111 1111 111 22 458889999999995458888999998
Q ss_pred cCCcEEEeeeCc--cCcCCcceehhhhcCCHHHHHHHH
Q 000092 355 ETGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 355 ~~g~~yfLEINp--RlqgehpvtE~vtGvDL~~~qL~i 390 (2267)
.+|.++++|+|. -++-+ -++..++.++....+..
T Consensus 267 ~~g~~~V~EVN~~~~P~~~--~~~~~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 267 KDGKDYIFEVMDCSMPLIG--EHQVEDRQLITDLVISK 302 (309)
T ss_dssp TTSCEEEEEEECTTCCCCS--SCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCcc--chhhhhHHHHHHHHHHH
Confidence 367799999999 66543 34445777887777653
No 94
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.43 E-value=2.4e-12 Score=159.50 Aligned_cols=221 Identities=14% Similarity=0.049 Sum_probs=152.7
Q ss_pred CCCEEEeCCCcCC--CCCc---hHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHcCC---CCCCCCCCCccCC
Q 000092 131 RVDAVWPGWGHAS--EIPE---LPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2267)
Q Consensus 131 ~vDaV~pG~G~~s--En~~---la~~l~~~GI~fiGPs~eam~~lgDK----~~~k~laq~aGV---Ptpp~~~~~~~~~ 198 (2267)
..|+|++-.+... ++.. +...++..|+.++ ++++++..|.|| ..+.++++++|+ |.+|...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~------ 252 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTF------ 252 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEe------
Confidence 5699998755433 2222 3456778999998 999999999999 567778889998 7555322
Q ss_pred CCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000092 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2267)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~ 278 (2267)
+.+.. +..+..|||+||||..|++|+||.++++.++++..++..... +..+++||||+
T Consensus 253 -----------------~~~~~---~~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~--~~~~~vQEfI~ 310 (422)
T 1pk8_A 253 -----------------YPNHK---EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT--KTYATAEPFID 310 (422)
T ss_dssp -----------------ESSGG---GCCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TSCEEEEECCC
T ss_pred -----------------cCchh---hhhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc--CceEEEEeecC
Confidence 11111 123468999999999999999999999999999888765433 35789999999
Q ss_pred ccceeeEEEEEcCCCCEEEeccccccc-ccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCC
Q 000092 279 QSRHLEVQLLCDQYGNVAALHSRDCSV-QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETG 357 (2267)
Q Consensus 279 g~rhieVqvl~D~~G~vi~l~~Rdcsv-qrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g 357 (2267)
.++.+.|.++++ ++++...|--+- .+-+.--....+.+ ++ +++++.|.++++++|--+.+.||++.+ ++|
T Consensus 311 ~g~DIRv~VVGg---~vva~~Rr~~~g~WrtNvg~g~~e~i~-lt----~e~~elA~kAaka~gGldiaGVDlL~s-~dG 381 (422)
T 1pk8_A 311 AKYDVRVQKIGQ---NYKAYMRTSVSGNWKTNTGSAMLEQIA-MS----DRYKLWVDTCSEIFGGLDICAVEALHG-KDG 381 (422)
T ss_dssp EEEEEEEEEETT---EEEEEEEEESSSCSSTTSSCEEEEEEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-TTS
T ss_pred CCceEEEEEECC---EEEEEEEEcCCCCceeccCceeeeeeC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-CCC
Confidence 888999998865 455433221000 01110000000111 22 468899999999994358888999998 467
Q ss_pred cEEEeeeCc--cCcCCcceehhhhcCCHHHHHHHHH
Q 000092 358 EYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 358 ~~yfLEINp--RlqgehpvtE~vtGvDL~~~qL~iA 391 (2267)
.+|+||+|. ..+-+ -++..++.|+....+...
T Consensus 382 ~~~VlEVN~s~~P~~~--g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 382 RDHIIEVVGSSMPLIG--DHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp CEEEEEEECTTCCCCT--TCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCCcc--chhhhHHHHHHHHHHHHH
Confidence 799999999 55433 344567888888877643
No 95
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.3e-14 Score=144.88 Aligned_cols=98 Identities=39% Similarity=0.558 Sum_probs=86.9
Q ss_pred HHhcCHHHHHHHHHHcCCCCCCCC--CCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcC
Q 000092 168 AALGDKIGSSLIAQAANVPTLPWS--GSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 245 (2267)
Q Consensus 168 ~~lgDK~~~k~laq~aGVPtpp~~--~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkG 245 (2267)
..++||..++++++++|||+|+|. . +.+.+++.++++.+|||+|+||..|+||+|
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~-----------------------~~~~~~~~~~~~~~~~P~vvKp~~~~~~~g 60 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGV-----------------------VKDAEEAVRIAREIGYPVMIKASAGGGGKG 60 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSC-----------------------BSSHHHHHHHHHHHCSSEEEEETTSCCTTT
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccc-----------------------cCCHHHHHHHHHhcCCCEEEEECCCCCCcc
Confidence 468899999999999999999987 4 678899999999999999999999999999
Q ss_pred eEEECCHHHHHHHHHHHHh----hCCCCcEEEEEeccccceeeEEEE
Q 000092 246 IRKVHNDDEVRALFKQVQG----EVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 246 Ir~V~s~eEL~~a~~~~~~----e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+++++|.+++.++++++.. ...+.+++||+|++|.+|++|+++
T Consensus 61 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 61 MRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 9999999999999988753 223468999999999889998765
No 96
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.41 E-value=2.3e-12 Score=157.20 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=154.4
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHcCC---CCCCCCCCCccCC
Q 000092 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2267)
Q Consensus 131 ~vDaV~pG~G~~s--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~~k~laq~aGV---Ptpp~~~~~~~~~ 198 (2267)
..|+|++-.+... ++. .+...++..|++.+ ++++++..|+|| ..+.+++.++|+ |.+|...
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~------ 157 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTF------ 157 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEe------
Confidence 6799998765422 211 23456778999998 999999999999 777788899998 8666332
Q ss_pred CCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000092 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2267)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~ 278 (2267)
..+.. +..+..|||+|+||..|++|+||.++++.++++..++..... +..+++||||+
T Consensus 158 -----------------~~~~~---~~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~--~~~~~vQefI~ 215 (344)
T 2p0a_A 158 -----------------FPNHK---PMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA--KTYATTEAFID 215 (344)
T ss_dssp -----------------ESSST---TCCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred -----------------cCchh---hhhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeccC
Confidence 11111 124468999999999999999999999999999877655433 45788999999
Q ss_pred ccceeeEEEEEcCCCCEEEecccccccccccceE-EEec---CCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-IEEG---PITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 279 g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi-ieea---Pa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
.++.+.|.++++ ++++...| . . ..|.+. +..+ +.+ ++ +++++.|.++++++|--+.+.||++.+
T Consensus 216 ~g~DiRv~VVGg---~vva~~R~-~-~-~g~wrtN~~~~~~e~~~-l~----~e~~~la~~Aa~a~gGldi~GVDll~~- 283 (344)
T 2p0a_A 216 SKYDIRIQKIGS---NYKAYMRT-S-I-SGNWKANTGSAMLEQVA-MT----ERYRLWVDSCSEMFGGLDICAVKAVHS- 283 (344)
T ss_dssp EEEEEEEEEETT---EEEEEEEE-E-S-SSCSSTTSSSEEEEEEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-
T ss_pred CCccEEEEEECC---EEEEEEEe-c-C-CCCCeecCCceEEEeeC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-
Confidence 888899998865 45543222 1 0 011111 0011 221 22 468889999999995458888999998
Q ss_pred cCCcEEEeeeCc--cCcCCcceehhhhcCCHHHHHHHHHc
Q 000092 355 ETGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 355 ~~g~~yfLEINp--RlqgehpvtE~vtGvDL~~~qL~iA~ 392 (2267)
.+|.+|++|+|. .+.-+ -++..++.|+....++...
T Consensus 284 ~~G~~~VlEVN~~~~P~~~--~~~~~~~~~Ia~~ii~~i~ 321 (344)
T 2p0a_A 284 KDGRDYIIEVMDSSMPLIG--EHVEEDRQLMADLVVSKMS 321 (344)
T ss_dssp TTSCEEEEEEECTTCCCCG--GGHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCCCCccc--chhhhHHHHHHHHHHHHHH
Confidence 467799999999 54432 4455688899988887653
No 97
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=134.45 Aligned_cols=77 Identities=40% Similarity=0.677 Sum_probs=72.0
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCCC
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPS 760 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~~~~ 760 (2267)
+++++.|+||++|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|..+.++|+.|.+|++|++|+..++.
T Consensus 2 ~~~~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~~~G~~V~~G~~l~~i~~~~~~ 78 (84)
T 2kcc_A 2 ENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLELDDLE 78 (84)
T ss_dssp CCCTTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECSCTTCCCCTTCCCEEEECSCSC
T ss_pred CCCCceEECCCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEcCCCCEECCCCEEEEEeCCChh
Confidence 35678899999999999999999999999999999999999999999999998777999999999999999887763
No 98
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.40 E-value=9.2e-13 Score=161.95 Aligned_cols=174 Identities=13% Similarity=0.215 Sum_probs=121.8
Q ss_pred CCeEeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCCCCCccCCCCCcccccCcccccccccCC--HHHHHHHH
Q 000092 156 GIIFLGPPATSMAALGDKIGSSLIAQAA-------NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYT--TEEAIASC 226 (2267)
Q Consensus 156 GI~fiGPs~eam~~lgDK~~~k~laq~a-------GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s--~eea~~~a 226 (2267)
|+.++ +++.++..+.||..|.+++.++ |||+|+|.. +.+ .+++.+..
T Consensus 101 gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~-----------------------~~~~~~~~~~~~~ 156 (346)
T 2q7d_A 101 ETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFME-----------------------LTSLCGDDTMRLL 156 (346)
T ss_dssp TSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEE-----------------------ECSCCCTTHHHHH
T ss_pred CeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEE-----------------------EeCCCHHHHHHHH
Confidence 77766 9999999999999999999997 999999865 111 12333332
Q ss_pred --hhhCCcEEEeecCCCC--CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc-ccceeeEEEEEcCCCCEEEeccc
Q 000092 227 --QVVGYPAMIKASWGGG--GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS-QSRHLEVQLLCDQYGNVAALHSR 301 (2267)
Q Consensus 227 --~~IGyPVVIKPs~GgG--GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~-g~rhieVqvl~D~~G~vi~l~~R 301 (2267)
..+|||+|+||..|.| |.|+.++.+.++|... +.+++|||||+ +++++.|-++++ .+++. .|
T Consensus 157 ~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~---------~~~~lvQefI~~~G~dirv~VvG~---~v~~~-~r 223 (346)
T 2q7d_A 157 EKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI---------QPPCVVQNFINHNAVLYKVFVVGE---SYTVV-QR 223 (346)
T ss_dssp HHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC-----------CCEEEEECCCCTTEEEEEEEETT---EEEEE-EE
T ss_pred HhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc---------CCCEEEEEeeCCCCeEEEEEEECC---EEEEE-EE
Confidence 3589999999998654 6699999999988752 46899999997 357888888754 44443 22
Q ss_pred ccccc-c-----------ccceEE---E---ecC------CCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCC
Q 000092 302 DCSVQ-R-----------RHQKII---E---EGP------ITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETG 357 (2267)
Q Consensus 302 dcsvq-r-----------r~qKii---e---eaP------a~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g 357 (2267)
...-. + +.+|+. . ..| ...+++ .+++++.|.++.+++|+..++ ||++.+.++|
T Consensus 224 ~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~~~g-vDii~~~~~g 300 (346)
T 2q7d_A 224 PSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVSLFG-IDIIINNQTG 300 (346)
T ss_dssp ECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCCEEE-EEEEECTTTC
T ss_pred ecCCCcCcCccccccccccceeeccCCccccccccccccccccCCC--hHHHHHHHHHHHHHhCCceEe-eEEEeecCCC
Confidence 11000 0 000100 0 011 011222 578999999999999999775 9999984357
Q ss_pred cEEEeeeCccCc
Q 000092 358 EYYFLELNPRLQ 369 (2267)
Q Consensus 358 ~~yfLEINpRlq 369 (2267)
++|+||+|+=++
T Consensus 301 ~~~VlEVN~~PG 312 (346)
T 2q7d_A 301 QHAVIDINAFPG 312 (346)
T ss_dssp CEEEEEEEESCC
T ss_pred CEEEEEEeCCcc
Confidence 899999999554
No 99
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.28 E-value=3.2e-12 Score=168.53 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=92.5
Q ss_pred cCeEEEEEEEe------ecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccCCC
Q 000092 613 EGSKYRIDMVR------RGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHD 686 (2267)
Q Consensus 613 ~g~~Y~v~v~~------~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d 686 (2267)
+|++|.+++.. .|...|.+.+||+.++|.+......... . . + ......+
T Consensus 594 ~Gk~~~i~l~~i~~~~~~g~~~~~vevnG~~~~v~v~~~~~~~~~---------~--~------~--------~~a~~~~ 648 (718)
T 3bg3_A 594 RGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKEM---------H--F------H--------PKALKDV 648 (718)
T ss_dssp TSCEEEEEEEEEEEECTTSEEEEEEESSSSEEEEEEECGGGTCC------------------------------CCCCCS
T ss_pred cCceeEEEecccCCcccCCcEEEEEEECCEEEEEEEeccCccccc---------c--c------c--------ccCCCCC
Confidence 48888887642 2334688888888888887643322100 0 0 0 0112345
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
+..|.|||||+|++|.|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 6789999999999999999999999999999999999999999999999988 99999999999999764
No 100
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=99.27 E-value=4.7e-12 Score=157.77 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCC-cEEEee--cCCCCCcC---
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKA--SWGGGGKG--- 245 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKP--s~GgGGkG--- 245 (2267)
+++.+|++++++|||+|+|.. +++.+|+.++++++|| |+|+|| ..||.|||
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~k 60 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFFV-----------------------ADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEET
T ss_pred CHHHHHHHHHHCCcCCCCeEE-----------------------ECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccc
Confidence 578899999999999999876 7899999999999999 899999 46776666
Q ss_pred ------eEEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC-C-CEEEec-cccccc
Q 000092 246 ------IRKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY-G-NVAALH-SRDCSV 305 (2267)
Q Consensus 246 ------Ir~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~~-G-~vi~l~-~Rdcsv 305 (2267)
|++++|.+|+.++++++.... ++ ..++||+|++.++|+.+.++.|.. | .++.+. ...+.+
T Consensus 61 s~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~i 140 (395)
T 2fp4_B 61 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDI 140 (395)
T ss_dssp TSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCH
T ss_pred cCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccc
Confidence 999999999999999886543 22 369999999988999999999985 3 455544 333444
Q ss_pred cc----ccceEEEec--CCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEE---------EEEccCCcEEEeeeCccCc
Q 000092 306 QR----RHQKIIEEG--PITVAPLETVKKLEQAARRLAKCVNYVGAATVEY---------LYSMETGEYYFLELNPRLQ 369 (2267)
Q Consensus 306 qr----r~qKiieea--Pa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEf---------l~d~~~g~~yfLEINpRlq 369 (2267)
.. ...+++... |...+++ ..|.++++.+|+.+...-.+ ++. +.+++++||||++-
T Consensus 141 E~va~~~~d~i~~~~idp~~~l~~-------~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~--~~d~~~lEINPl~~ 210 (395)
T 2fp4_B 141 EEVAASNPELIFKEQIDIIEGIKD-------SQAQRMAENLGFLGPLQNQAADQIKKLYNLFL--KIDATQVEVNPFGE 210 (395)
T ss_dssp HHHHHHCGGGCEEEECCTTTCCCH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH--HTTEEEEEEEEEEE
T ss_pred eeccccCCceEEEEecCCCCCCCH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhh--hCCeEEEEeeeEEE
Confidence 32 245666544 4444555 45667777778865432111 122 23699999999985
No 101
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.26 E-value=6.5e-12 Score=124.56 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=63.3
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
++.+|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+ .|..|++|++|+..+
T Consensus 16 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 16 TMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp TCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred CCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 46899999999999999999999999999999999999999999988 99999 899999999998643
No 102
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.26 E-value=8.4e-12 Score=118.84 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=66.1
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.|+||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|..+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 37899999999999999999999999999999999999999999999988 9999999999999998764
No 103
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.25 E-value=4.9e-12 Score=123.27 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=66.3
Q ss_pred CCCceecCCCceeEEE-------EccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 686 DPSKLVAETPCKLLRY-------LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~-------~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
++..|+||++|+|.++ +|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 3 ~~~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 3 SGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CSEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred cCeEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 4567999999999997 9999999999999999999999999999999999988 99999999999999874
No 104
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1e-11 Score=125.93 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=63.3
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCcc-CCCCEEEEEecCCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAM-QAGELIARLDLDDP 759 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v-~~G~~La~l~~~~~ 759 (2267)
.++|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++ +++|+.| ..|++|++|+..+.
T Consensus 19 ~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~~ 87 (98)
T 2dnc_A 19 MEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGE 87 (98)
T ss_dssp CSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTTS
T ss_pred CccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCCC
Confidence 4699999999999999999999999999999999999999999988 9999999 99999999987543
No 105
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.23 E-value=1.2e-11 Score=124.37 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=63.9
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
+..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+..+.
T Consensus 15 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~~ 83 (93)
T 1k8m_A 15 GIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEAL 83 (93)
T ss_dssp TSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred CCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 35799999999999999999999999999999999999999999988 999999999999999986543
No 106
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.21 E-value=1.6e-11 Score=152.86 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCc-EEEeecCCCCCc----Ce
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGK----GI 246 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGk----GI 246 (2267)
+|+.+|++++++|||+|+|.. +++.+|+.++++++||| +|+||..+.||| ||
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV 60 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGYA-----------------------CTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCE
T ss_pred CHHHHHHHHHHCCcCCCCeeE-----------------------ECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCE
Confidence 689999999999999999876 78999999999999999 999999875554 99
Q ss_pred EEECCHHHHHHHHHHHHhhC--------C---CCcEEEEEeccccceeeEEEEEcCC-C-CEEEec-cc--cccc-cccc
Q 000092 247 RKVHNDDEVRALFKQVQGEV--------P---GSPIFIMKVASQSRHLEVQLLCDQY-G-NVAALH-SR--DCSV-QRRH 309 (2267)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~---~~~I~VEeyI~g~rhieVqvl~D~~-G-~vi~l~-~R--dcsv-qrr~ 309 (2267)
++++|.+|+.++++++.... . ..+++||+|++.++|+.|.++.|.. | .++.+. .. ++.. ..++
T Consensus 61 ~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~ 140 (388)
T 2nu8_B 61 KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEET 140 (388)
T ss_dssp EEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccC
Confidence 99999999999999886531 1 2479999999978999999999986 3 455443 11 3332 3322
Q ss_pred -ceEEE--ecCCCCCCHHHHHHHHHHHHHHHHHcCceeee---------EEEEEEEccCCcEEEeeeCccCcC
Q 000092 310 -QKIIE--EGPITVAPLETVKKLEQAARRLAKCVNYVGAA---------TVEYLYSMETGEYYFLELNPRLQV 370 (2267)
Q Consensus 310 -qKiie--eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~---------tVEfl~d~~~g~~yfLEINpRlqg 370 (2267)
.++.. ..|...+++.... ++++.+|+.+.. .+-.++. +..++++||||++..
T Consensus 141 pd~i~~~~i~P~~gl~~~~a~-------~~~~~lG~~~~~~~~~~~~l~~l~~~~~--~~d~~~lEINPl~~~ 204 (388)
T 2nu8_B 141 PHLIHKVALDPLTGPMPYQGR-------ELAFKLGLEGKLVQQFTKIFMGLATIFL--ERDLALIEINPLVIT 204 (388)
T ss_dssp GGGEEEEECBTTTBCCHHHHH-------HHHHHTTCCTHHHHHHHHHHHHHHHHHH--HTTEEEEEEEEEEEE
T ss_pred CceEEEEecCCCCCCCHHHHH-------HHHHHcCCCHHHHHHHHHHHHHHHHHHH--hCCEEEEEecceEEc
Confidence 45555 5576667765433 344445664321 0001122 236999999999753
No 107
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.20 E-value=1.3e-11 Score=120.12 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=63.1
Q ss_pred ecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 691 ~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
.++++|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+.
T Consensus 11 ~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 11 ESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 367999999999999999999999999999999999999999999988 999999999999999875
No 108
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=99.16 E-value=1.2e-10 Score=152.72 Aligned_cols=164 Identities=14% Similarity=0.066 Sum_probs=121.2
Q ss_pred CCCChHHHhcccc---------cCCC--CcccccccC-CCceecccccc---ceEEEEEE------EECCeEEEEEEEec
Q 000092 1858 NSCDPRAAICGFL---------DNNG--KWIGGIFDK-DSFVETLEGWA---RTVVTGRA------RLGGIPVGIVAVET 1916 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~---------~~~~--~~~~gl~D~-gSF~E~~~~~a---~~vVtG~a------rl~G~pVgViA~e~ 1916 (2267)
-.||--++++... .+.+ +...-|||+ |||.|+....+ .++|+|++ +++|++|.|+++|+
T Consensus 51 y~yd~~~~~~~a~~~~w~~~~~~~~~~l~~~elllD~~gsf~E~~~~~~~~~~GmV~g~~~~~t~~~~~Gr~vvVianD~ 130 (793)
T 2x24_A 51 YVYDFPEMFRQALFKMWPSPDKYPKDILTYTELVLDPQGQLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDI 130 (793)
T ss_dssp CGGGHHHHHHHHHHHHSCSSSCCCTTSEEEEEEEECTTSCEECCCCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECS
T ss_pred cccccHHHHHHHHHHhhhhcccCCCCchhHHHHhcCCCCCEEEeCCccCCCCCCeeeeeecccCccccCCeEEEEEEECC
Confidence 3577777775211 1122 456679999 99999987664 59999998 56999999999998
Q ss_pred cccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhh-------------
Q 000092 1917 QTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF------------- 1983 (2267)
Q Consensus 1917 ~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~------------- 1983 (2267)
++. ||++++..++|+.|++++|.++++|+|+|+|++|...|..++.
T Consensus 131 t~~---------------------gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGARig~~ee~~sl~qma~~d~~~ 189 (793)
T 2x24_A 131 TFR---------------------IGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVAWVDPED 189 (793)
T ss_dssp SGG---------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCHHHHTTCEEEESSSSC
T ss_pred ccc---------------------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCccchhhhhhhhcccccCccC
Confidence 766 8999999999999999999999999999999999887643322
Q ss_pred --hch------------------------------------------------HHHHHHHHHHHhc--CCCCEEEEEccC
Q 000092 1984 --EGI------------------------------------------------LQAGSTIVENLRT--YKQPVFVYIPMM 2011 (2267)
Q Consensus 1984 --~gi------------------------------------------------lk~ga~iv~al~~--~~vP~i~vI~~~ 2011 (2267)
.|. ++..+.|..+.+. ..+|+|++|+
T Consensus 190 p~~G~~~~yl~~~~~~~~sa~~~v~~~~~~~~ge~~~~i~~i~g~~~~i~v~~l~~SG~iag~~s~a~~~iP~IsvV~-- 267 (793)
T 2x24_A 190 PHKGIKYLYLTPQDYTRISSLNSVHCKHVEEDGESRYVITDIIGKEEGLGVENLRGSGMIAGETSQDYDEIVTISMVS-- 267 (793)
T ss_dssp STTCEEEEEECHHHHHHTTTSCSEEEEEEEETTEEEEEEEEECCSSSSSSTHHHHHHHHHHHHHHHHHHHSCEEEEEC--
T ss_pred cccchheeccchhHHHhhhccccccccccccccccceeeeccccccchHHHHHHHhccchhhccccccCCCCEEEEEe--
Confidence 111 1111222222322 3599999999
Q ss_pred CcCCc-hhHhhhccccCCccceeecccccEEEeeCccchh
Q 000092 2012 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2050 (2267)
Q Consensus 2012 g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav 2050 (2267)
|++.| |||.+.- .|+ ++|.++|.+++.||+.+-
T Consensus 268 G~~~GGgAy~~~l----gD~--vI~~~~a~i~ltGp~vi~ 301 (793)
T 2x24_A 268 CRALGIGAYLVRL----GQR--VIQVENSHIILTGATALN 301 (793)
T ss_dssp SEEETHHHHHHHH----TCC--EEEETTCEEESSCHHHHH
T ss_pred cCCchHHHHHHhh----CCe--EEEeccccEEecCHHHHH
Confidence 65555 5665554 366 899999999999997654
No 109
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.16 E-value=6.2e-11 Score=114.41 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=67.4
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
.+...|.||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 6 ~~~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 6 AGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCCeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 456789999999999999999999999999999999999999999999999988 99999999999999874
No 110
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.15 E-value=6.1e-11 Score=113.32 Aligned_cols=69 Identities=30% Similarity=0.437 Sum_probs=66.1
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
...|.||++|+|.+|++++||+|++||+|+++|+|||..+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 5 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CeEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4679999999999999999999999999999999999999999999999988 99999999999999874
No 111
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.15 E-value=5.3e-11 Score=120.89 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCc
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSA 761 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~ 761 (2267)
.+...|+||++|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+...
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~~~ 89 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDK 89 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCSCC
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCccc
Confidence 456789999999999999999999999999999999999999999999999988 99999999999999998765543
No 112
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.14 E-value=3.3e-11 Score=124.28 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=62.6
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+ .|..|++|++|+..+
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 4789999999999999999999999999999999999999999988 99999 899999999998653
No 113
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.14 E-value=6.5e-11 Score=164.79 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=75.4
Q ss_pred eEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeec
Q 000092 650 LLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729 (2267)
Q Consensus 650 ~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~a 729 (2267)
+.+.+||+.+.+.+.+...... ...........++..|.|||||+|++|.|++||.|++||+|++||+|||+++|+|
T Consensus 1061 ~~~evnG~~~~v~v~~~~~~~~---~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~A 1137 (1165)
T 2qf7_A 1061 VFFELNGQPRRIKVPDRAHGAT---GAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHA 1137 (1165)
T ss_dssp EEEEETTEEEEEEEECGGGTCC---SCCCSCBCCTTCTTEEECSSCEEEEEECCSSCCCC---CEEEEEEC---CEEEEC
T ss_pred EEEEECCEEEEEEecCcccccc---cccccccCCCCCCceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEc
Confidence 5667777777777665432110 0001111123456789999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 730 PASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 730 p~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
|.+|+|+.+ +++|+.|++|++|++|+
T Consensus 1138 p~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1138 EKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 999999988 99999999999999875
No 114
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.14 E-value=3.2e-11 Score=116.62 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=62.7
Q ss_pred ecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 691 ~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
.+|++|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 568999999999999999999999999999999999999999999988 99999999999999985
No 115
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.13 E-value=1.2e-11 Score=124.62 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=33.8
Q ss_pred cCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 683 ~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
.+.+...|+||++|+|.+|.|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 21 ~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 21 QSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 34457789999999999999999999999999999999999999999999999987 99999999999999874
No 116
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.12 E-value=8.6e-11 Score=124.35 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
.+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|..+ +++|+ .|..|++|++|+..+
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 579999999999999999999999999999999999999999988 99998 899999999998654
No 117
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.09 E-value=2e-11 Score=120.45 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=66.2
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
.+++|..|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 4 ~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred EEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 47788889999999999999999999999999999999999999999888 99999999999999998754
No 118
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.09 E-value=7.1e-11 Score=164.42 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=65.2
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
..|.|||||+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|+.|++|++|
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 469999999999999999999999999999999999999999999999999 9999999999999987
No 119
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.07 E-value=3.5e-11 Score=117.46 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=64.3
Q ss_pred eecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
+-+|++|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4468999999999999999999999999999999999999999999988 9999999999999999764
No 120
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.06 E-value=1.4e-10 Score=112.82 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=61.8
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+..+
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 99999999999999999999999999999999999999999988 99999999999999998654
No 121
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.05 E-value=1.3e-11 Score=120.50 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=61.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
++.+|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+.
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 45799999999999999999999999999999999999999999988 999999999999998864
No 122
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.02 E-value=3.9e-10 Score=109.62 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+ +|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+..+
T Consensus 13 ~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 13 G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 6 999999999999999999999999999999999999999988 99999999999999998654
No 123
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.83 E-value=3.9e-10 Score=133.12 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=129.1
Q ss_pred CCEEEeCCCcCCCCCchHHH---HHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 132 VDAVWPGWGHASEIPELPDT---LSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 132 vDaV~pG~G~~sEn~~la~~---l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
+|.+++=| |..-.+-++ ++..+. |.-++..+...++||..+.++++++|||+|++.. +..+.+ -|.
T Consensus 58 ~d~lisf~---s~gfpl~kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~----~~rd~~---~~~ 126 (330)
T 3t7a_A 58 CDCLISFH---SKGFPLDKAVAYAKLRNP-FVINDLNMQYLIQDRREVYSILQAEGILLPRYAI----LNRDPN---NPK 126 (330)
T ss_dssp CSEEEECC---CTTCCHHHHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEE----ECCBTT---BGG
T ss_pred CCEEEEec---cCCCcHHHHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEE----EeCCCC---Ccc
Confidence 67777543 332223233 333454 4559999999999999999999999999999875 110100 000
Q ss_pred ccccccccCCHHHHHH-HHhhhCCcEEEeecCCC-------------C--CcCeEEECCHHHHHHHHHHHHhhCCCCcEE
Q 000092 209 DVYRQACVYTTEEAIA-SCQVVGYPAMIKASWGG-------------G--GKGIRKVHNDDEVRALFKQVQGEVPGSPIF 272 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~-~a~~IGyPVVIKPs~Gg-------------G--GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~ 272 (2267)
+. ..+.+ ++..+ ..+.+|+|+|+||..|. | ++-++++.|.+.....-..+ .....++
T Consensus 127 ~~---~~~e~-~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v---r~~~~~i 199 (330)
T 3t7a_A 127 EC---NLIEG-EDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV---RKTGSYI 199 (330)
T ss_dssp GS---SEEEC-SSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC---CSSSCEE
T ss_pred cc---ceecc-chhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh---ccCCcEE
Confidence 00 00111 11112 24568899999999995 2 23355666543320000011 1256899
Q ss_pred EEEecc-ccceeeEEEEEcCCCCEEEeccccccc----ccccceEEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCceeee
Q 000092 273 IMKVAS-QSRHLEVQLLCDQYGNVAALHSRDCSV----QRRHQKIIEE-GPITVAPLETVKKLEQAARRLAKCVNYVGAA 346 (2267)
Q Consensus 273 VEeyI~-g~rhieVqvl~D~~G~vi~l~~Rdcsv----qrr~qKiiee-aPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~ 346 (2267)
+|||++ .++.+-|-++++ ++++-..|...+ -|++..--+. .|.. +++ +.++.|.++++++|. +++
T Consensus 200 ~QEFI~~~G~DIRv~vVG~---~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~-Lt~----eek~iA~kaa~a~G~-~v~ 270 (330)
T 3t7a_A 200 YEEFMPTDGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEVRYPVI-LNA----REKLIAWKVCLAFKQ-TVC 270 (330)
T ss_dssp EEECCCCSSEEEEEEEEST---TCEEEEEEECTTSSCBCCBCTTSCBCCEECC-CCH----HHHHHHHHHHHHTTB-SEE
T ss_pred EEeccCCCCceEEEEEECC---EEEEEEEEeCCCCCCcEEEcCCCCceeeeec-CCH----HHHHHHHHHHHHhCC-ceE
Confidence 999996 357888877765 556655553321 1222111111 1332 444 668999999999996 677
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCCc
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVEH 372 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2267)
.||++.+ ++++|++|+|.+..+-.
T Consensus 271 GVDlLrs--~~~~~V~EVNg~~fvk~ 294 (330)
T 3t7a_A 271 GFDLLRA--NGQSYVCDVNGFSFVKN 294 (330)
T ss_dssp EEEEEEE--TTEEEEEEEEESCCCSS
T ss_pred EEEEEEE--CCccEEEEeCCCccccC
Confidence 7999998 67899999999987653
No 124
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.82 E-value=2.1e-09 Score=114.67 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=67.7
Q ss_pred CceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCC
Q 000092 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDD 758 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v~---~G~-~La~l~~~~ 758 (2267)
+...+|++|.|+.+.+ ++||.|++||++++||+|||+++|.||.+|+|..+ +..|+.|+ .|+ .|++|++.+
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence 4578999999999988 99999999999999999999999999999999888 67899999 898 999999887
Q ss_pred CCc
Q 000092 759 PSA 761 (2267)
Q Consensus 759 ~~~ 761 (2267)
++.
T Consensus 117 ~~~ 119 (136)
T 1zko_A 117 EGE 119 (136)
T ss_dssp GGG
T ss_pred HHH
Confidence 643
No 125
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=98.71 E-value=1.4e-09 Score=136.72 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=0.0
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++.
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 16 EGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp ------------------------------------------------------------------
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 69999999999999999999999999999999999999999888 999999999999999986543
No 126
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A
Probab=98.70 E-value=5.3e-08 Score=126.95 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=102.2
Q ss_pred CCceecccccc---ceEEEEEEEE------CCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000092 1884 DSFVETLEGWA---RTVVTGRARL------GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1954 (2267)
Q Consensus 1884 gSF~E~~~~~a---~~vVtG~arl------~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ar 1954 (2267)
|...|.....| .++|+|.+++ +|++|.|+++|++++ ||++++..++|+.|
T Consensus 73 ~~L~~~~r~~G~nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t~~---------------------gGS~G~~~~eKi~R 131 (758)
T 3k8x_A 73 GELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFK---------------------IGSFGPQEDEFFNK 131 (758)
T ss_dssp SCEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSG---------------------GGCBCHHHHHHHHH
T ss_pred CCeehhhcCCCCCCceEEEEEEEECCccccCCeEEEEEEECCccc---------------------cccCcHHHHHHHHH
Confidence 34555554444 7899999999 999999999998877 89999999999999
Q ss_pred HHHHhcccCCcEEEEecCCCCCCchhhhh-------------------------hchH----------------------
Q 000092 1955 ALMDFNREELPLFILANWRGFSGGQRDLF-------------------------EGIL---------------------- 1987 (2267)
Q Consensus 1955 ai~~a~~~~lPLv~l~d~~Gf~~G~~~e~-------------------------~gil---------------------- 1987 (2267)
+++.|.+.++|+|+|+|++|.-.+..++. .++.
T Consensus 132 a~e~A~~~~lPvI~l~dSGGARmqe~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~~~vi~~~~~~~ge~ 211 (758)
T 3k8x_A 132 VTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEE 211 (758)
T ss_dssp HHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETTEE
T ss_pred HHHHHHHcCCCEEEEecCCCcCccccchhccccccccccccchhcccceeccCHHHHHHhhhccccccceeeeeccCCce
Confidence 99999999999999999999766543320 0011
Q ss_pred -------------------HHHHHHHHHHhc--CCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCc
Q 000092 1988 -------------------QAGSTIVENLRT--YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 1988 -------------------k~ga~iv~al~~--~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+..+.|..+++. ..+|+|++|+ |.+.+||||++.- .|+ ++|.+++.+++.||
T Consensus 212 r~~I~~I~G~~~~~gv~~l~~sG~iag~~s~a~~~IPqIsvV~-G~c~GGgAY~paL----~D~--vImv~~s~ifltGP 284 (758)
T 3k8x_A 212 RFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVT-CRSVGIGAYLVRL----GQR--AIQVEGQPIILTGA 284 (758)
T ss_dssp EEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEC-SCEETHHHHHHHH----TCE--EEEETTCCEESSCH
T ss_pred eeeEeeeeccccchhhhhccccchhhhhhhhhhcCCCEEEEEc-cCCchHHHHHHhh----CCE--EEEECCceEEEeCH
Confidence 111112222222 3589999999 4445556665443 376 89999999999999
Q ss_pred cchhh
Q 000092 2047 EGMIE 2051 (2267)
Q Consensus 2047 egav~ 2051 (2267)
...-.
T Consensus 285 ~vIk~ 289 (758)
T 3k8x_A 285 PAINK 289 (758)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 127
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.68 E-value=6.1e-08 Score=121.11 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCc----CeE
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGK----GIR 247 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGk----GIr 247 (2267)
+-+.+|++++++|||+|+|.. +++.+|+.++++++|||||+||....||| ||+
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~ 60 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKV-----------------------AYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVK 60 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEE
T ss_pred CHHHHHHHHHHCCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEE
Confidence 346789999999999999876 78999999999999999999999865555 999
Q ss_pred EECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCC
Q 000092 248 KVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYG 293 (2267)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhieVqvl~D~~G 293 (2267)
++.|.+|+.++++++.... ....++||++++.++|+.+.++.|...
T Consensus 61 l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g~El~vgv~~D~~~ 110 (397)
T 3ufx_B 61 LADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRAK 110 (397)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEEEEEEEEEEEETTT
T ss_pred EeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCCeeEEEEEEecCCC
Confidence 9999999999999887532 135899999999789999999999764
No 128
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=98.62 E-value=4.2e-09 Score=122.01 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCc-cCCCCEEEEEecC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQA-MQAGELIARLDLD 757 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~-v~~G~~La~l~~~ 757 (2267)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+. |..|++|++|+.+
T Consensus 16 ~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 16 EEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEecc
Confidence 589999999999999999999999999999999999999999988 999997 9999999999753
No 129
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.53 E-value=6.5e-08 Score=100.67 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=65.7
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEccccce-----------------------------eeecCCCcEEEEe-
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCM-----------------------------PLLSPASGVLQFK- 738 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~-----------------------------~l~ap~~G~v~~i- 738 (2267)
.|.||++|+|.++.|++||.|++||+|++|+..+.+. .|+||.+|+|..+
T Consensus 3 ~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~ 82 (116)
T 2k32_A 3 IIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL 82 (116)
T ss_dssp EECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred EEeCcCCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence 4889999999999999999999999999999987765 8999999999888
Q ss_pred eCCCCccCCC-CEEEEEecCCC
Q 000092 739 MAEGQAMQAG-ELIARLDLDDP 759 (2267)
Q Consensus 739 ~~~G~~v~~G-~~La~l~~~~~ 759 (2267)
+++|+.|.+| ++|++|...+.
T Consensus 83 ~~~G~~v~~g~~~l~~i~~~~~ 104 (116)
T 2k32_A 83 VNIGDYVSASTTELVRVTNLNP 104 (116)
T ss_dssp CCTTCEECTTTSCCEEEECSCT
T ss_pred CCCCCEEcCCCcEEEEEECCCe
Confidence 9999999999 99999987654
No 130
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.44 E-value=1.6e-07 Score=99.83 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=63.9
Q ss_pred CceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCC
Q 000092 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDD 758 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v~---~G~-~La~l~~~~ 758 (2267)
+....|++|.|+.+.+ ++|++|++||++++||+|||+++|.||.+|+|..+ ....+.|+ .|+ -|++|++.+
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS 107 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESS
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECC
Confidence 3467899999999988 99999999999999999999999999999999988 34556775 455 899999887
Q ss_pred CCc
Q 000092 759 PSA 761 (2267)
Q Consensus 759 ~~~ 761 (2267)
++.
T Consensus 108 ~~~ 110 (131)
T 1hpc_A 108 PDE 110 (131)
T ss_dssp GGG
T ss_pred HHH
Confidence 644
No 131
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.32 E-value=5.4e-07 Score=95.47 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=64.3
Q ss_pred CceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCcc---CCCC-EEEEEecCC
Q 000092 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAM---QAGE-LIARLDLDD 758 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v---~~G~-~La~l~~~~ 758 (2267)
+....|++|.|+.+.+ ++|++|++||++++||+|||.++|.||.+|+|..+ ....+.| ..|+ -|++|++.+
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD 107 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECC
Confidence 4467899999999987 99999999999999999999999999999999988 3466777 5676 899999887
Q ss_pred CCc
Q 000092 759 PSA 761 (2267)
Q Consensus 759 ~~~ 761 (2267)
++.
T Consensus 108 ~~~ 110 (128)
T 1onl_A 108 MGD 110 (128)
T ss_dssp GGG
T ss_pred HHH
Confidence 644
No 132
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.27 E-value=5e-07 Score=95.75 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred CceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCC
Q 000092 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDD 758 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v~---~G~-~La~l~~~~ 758 (2267)
+....|+.|.|+.+.+ ++|++|++||++++||+|||.++|.||.+|+|..+ ....+.|+ .|+ -|++|.+.+
T Consensus 29 td~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~ 108 (128)
T 3a7l_A 29 TEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD 108 (128)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred ehHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECC
Confidence 3467899999999987 99999999999999999999999999999999988 35677787 676 899999887
Q ss_pred CCc
Q 000092 759 PSA 761 (2267)
Q Consensus 759 ~~~ 761 (2267)
++.
T Consensus 109 ~~~ 111 (128)
T 3a7l_A 109 ESE 111 (128)
T ss_dssp GGG
T ss_pred HHH
Confidence 654
No 133
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=97.53 E-value=0.00046 Score=80.20 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=72.2
Q ss_pred CCccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEcc-CCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM-MAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~-~g~~~G-G 2017 (2267)
.|.+.+..+....++++.+...+ .+|++-.|+|| |....+..|.+++...++|++++|.| +|.+.| |
T Consensus 16 ~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~inspG----------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG 85 (230)
T 3viv_A 16 KGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG----------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAG 85 (230)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSC----------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHH
T ss_pred eCEECHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC----------cCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHH
Confidence 47899999999999998887654 46777789998 44566778999999999999999944 465555 6
Q ss_pred hHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|+++++ |. ++|.|++++|..+|-
T Consensus 86 ~~ia~a~----d~--~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 86 TYIALGS----HL--IAMAPGTSIGACRPI 109 (230)
T ss_dssp HHHHHTS----SE--EEECTTCEEECCCEE
T ss_pred HHHHHhc----Cc--eeECCCCEEEeccce
Confidence 6666664 66 899999999987775
No 134
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.35 E-value=7.1e-05 Score=88.91 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=62.0
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccc---------------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK--------------------------------------------- 722 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK--------------------------------------------- 722 (2267)
..|.||.+|+|.+++|++||+|++||+|++|+.-.
T Consensus 23 ~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~ 102 (277)
T 2f1m_A 23 AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQ 102 (277)
T ss_dssp EEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHH
T ss_pred EEEEccccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 46899999999999999999999999999998621
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCC
Q 000092 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDD 758 (2267)
Q Consensus 723 --------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G--~~La~l~~~~ 758 (2267)
-...|+||.+|+|..+ +++|+.|.+| ++|++|...+
T Consensus 103 a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~ 167 (277)
T 2f1m_A 103 ALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 167 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence 1258999999999988 9999999999 5899887544
No 135
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.25 E-value=0.00024 Score=89.55 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=62.6
Q ss_pred CCceecCCCceeEEEEc-cCCCEEcCCCcEEEEEc---------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEV--------------------------------------------- 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEa--------------------------------------------- 720 (2267)
...|.++.+|.|.++.| ++||.|++||+|++|++
T Consensus 121 ~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~ 200 (413)
T 3ne5_B 121 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 200 (413)
T ss_dssp EEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35699999999999999 99999999999999994
Q ss_pred ---cccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 721 ---MKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 721 ---MKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..-...|+||.+|+|..+ +++|+.|.+|++|++|...
T Consensus 201 ~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 201 TQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp HTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred hccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 112458999999999988 9999999999999998743
No 136
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=97.25 E-value=0.00097 Score=76.81 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=71.8
Q ss_pred CCccCHHHHHHHHHHHHHhccc-CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-hh
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE-ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GA 2018 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~-~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-Ga 2018 (2267)
+|.+.+..+..+.+.+..+... .-||++..|||| |..-.+-.|.+++...+.|+++++. |.+.+ |+
T Consensus 45 ~G~I~~~~a~~i~~~L~~l~~~~~k~I~l~INSPG----------Gsv~a~~~I~~~i~~~~~pV~t~v~--g~AAS~g~ 112 (215)
T 2f6i_A 45 TDEINKKTADELISQLLYLDNINHNDIKIYINSPG----------GSINEGLAILDIFNYIKSDIQTISF--GLVASMAS 112 (215)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEECHHHH
T ss_pred ccEECHHHHHHHHHHHHHHHhCCCCcEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEe--eEhHhHHH
Confidence 6888888898888888766442 389999999999 4456677889999999999999998 55555 55
Q ss_pred HhhhccccCCccceeecccccEEEeeCccch
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
|++++.. ... .+|.|++++++-.|.+.
T Consensus 113 ~Ia~agd--~g~--i~a~p~s~i~ih~p~~~ 139 (215)
T 2f6i_A 113 VILASGK--KGK--RKSLPNCRIMIHQPLGN 139 (215)
T ss_dssp HHHHTSC--TTC--EEECTTCEEESSCTTCS
T ss_pred HHHHcCC--ccc--EEEcCCCEEEEeccccc
Confidence 5555542 222 79999999999888654
No 137
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.25 E-value=0.00023 Score=87.66 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=63.6
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc-------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM------------------------------------------- 723 (2267)
...|.||.+|+|.+++|++||+|++||+|++|+.-..
T Consensus 57 ~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~ 136 (359)
T 3lnn_A 57 LVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQS 136 (359)
T ss_dssp EEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHH
T ss_pred EEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4569999999999999999999999999999986422
Q ss_pred ---------------------------------ceeeecCCCcEEEEe-eCCCCccCC-CCEEEEEecCC
Q 000092 724 ---------------------------------CMPLLSPASGVLQFK-MAEGQAMQA-GELIARLDLDD 758 (2267)
Q Consensus 724 ---------------------------------~~~l~ap~~G~v~~i-~~~G~~v~~-G~~La~l~~~~ 758 (2267)
...|+||.+|+|..+ +.+|+.|.+ |++|++|...+
T Consensus 137 ~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~ 206 (359)
T 3lnn_A 137 DYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLS 206 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCC
Confidence 257999999999998 999999999 99999987544
No 138
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.24 E-value=0.0003 Score=74.12 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=55.6
Q ss_pred eecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-e---CCCCccC---CCC-EEEEEecCCCC
Q 000092 690 LVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-M---AEGQAMQ---AGE-LIARLDLDDPS 760 (2267)
Q Consensus 690 l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~---~~G~~v~---~G~-~La~l~~~~~~ 760 (2267)
.-..+.|.|+-+.+ ++|++|++|+++++||+|||..+|.||.+|+|..+ . ..-+.|+ .|+ =|++|.+.+++
T Consensus 26 ~Aq~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~~ 105 (125)
T 3klr_A 26 FAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPS 105 (125)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCGG
T ss_pred HHHhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCHH
Confidence 34566899999877 79999999999999999999999999999999888 2 2233343 344 47777777653
No 139
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.20 E-value=0.00026 Score=86.58 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=61.8
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc-------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM------------------------------------------- 723 (2267)
...|.+|.+|+|.+++|++||+|++||+|++|+.-..
T Consensus 31 ~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~ 110 (341)
T 3fpp_A 31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQA 110 (341)
T ss_dssp EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSS
T ss_pred EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999999999999999986311
Q ss_pred ------------------------------------------ceeeecCCCcEEEEe-eCCCCccCCCCE---EEEEecC
Q 000092 724 ------------------------------------------CMPLLSPASGVLQFK-MAEGQAMQAGEL---IARLDLD 757 (2267)
Q Consensus 724 ------------------------------------------~~~l~ap~~G~v~~i-~~~G~~v~~G~~---La~l~~~ 757 (2267)
...|+||.+|+|..+ +.+|+.|.+|+. |++|...
T Consensus 111 ~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 111 VSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 190 (341)
T ss_dssp STTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecC
Confidence 156999999999988 999999999987 8887643
Q ss_pred C
Q 000092 758 D 758 (2267)
Q Consensus 758 ~ 758 (2267)
+
T Consensus 191 ~ 191 (341)
T 3fpp_A 191 S 191 (341)
T ss_dssp S
T ss_pred C
Confidence 3
No 140
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=97.17 E-value=0.0026 Score=73.42 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=72.0
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+... .-+|++..|+|| |....+-.|.+++...+.|+++++. |-+.+ |
T Consensus 51 ~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPG----------G~v~ag~~I~~~i~~~~~pV~t~v~--G~AaS~G 118 (218)
T 1y7o_A 51 TGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG----------GSVSAGLAIVDTMNFIKADVQTIVM--GMAASMG 118 (218)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred eCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC----------CCHHHHHHHHHHHHhcCCCEEEEEc--cEeHHHH
Confidence 5788899999999999877653 579999999999 4455677889999999999999997 54444 6
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++... .. .+|.|+|++++-.|-+.
T Consensus 119 ~~Ia~a~d~--g~--r~a~p~a~igih~p~~g 146 (218)
T 1y7o_A 119 TVIASSGAK--GK--RFMLPNAEYMIHQPMGG 146 (218)
T ss_dssp HHHHTTSCT--TC--EEECTTCEEECCCCC--
T ss_pred HHHHHcCCc--Cc--EEEcCCcEEEEeccccc
Confidence 666666532 12 68999999999988654
No 141
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=97.07 E-value=0.0031 Score=71.98 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
.+|.+.+..+..+.+.+..+... .-|+++..|||| |....+-.|.+.+...+.|+++++. |.+.+
T Consensus 32 l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG----------G~v~~~~~I~~~i~~~~~~V~t~~~--G~AaSa 99 (203)
T 3qwd_A 32 LGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG----------GSVTAGFAIYDTIQHIKPDVQTICI--GMAASM 99 (203)
T ss_dssp ECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETH
T ss_pred EcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC----------CCHHHHHHHHHHHHHhcCCcEEEEe--eeehhH
Confidence 36899999999999988887653 579999999999 4456778889999999999999998 65555
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
|+|++++.. ... .+|.|+|++++-.|-+.
T Consensus 100 g~~i~~ag~--~g~--r~~~p~a~imiHqP~~~ 128 (203)
T 3qwd_A 100 GSFLLAAGA--KGK--RFALPNAEVMIHQPLGG 128 (203)
T ss_dssp HHHHHHTSC--TTC--EEECTTCEEECCCCSSS
T ss_pred HHHHHHcCC--cCe--EEEcCCceEEEeccccc
Confidence 666666542 123 79999999999888653
No 142
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=96.95 E-value=0.0049 Score=70.68 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=71.2
Q ss_pred CCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+.. ..-+|++..|||| |..-.+-.|.+++...+.|+++++. |-+.+ |
T Consensus 33 ~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG----------G~v~a~~~I~~~i~~~~~pV~~~v~--g~AaS~g 100 (208)
T 2cby_A 33 GSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG----------GSISAGMAIYDTMVLAPCDIATYAM--GMAASMG 100 (208)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHCSSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEC--cEeHHHH
Confidence 688999999999999987764 4579999999999 3445677889999999999999997 55555 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++. |.-..||.|++++++..|.+.
T Consensus 101 ~~Ia~ag----d~~~~~a~p~a~igih~p~~~ 128 (208)
T 2cby_A 101 EFLLAAG----TKGKRYALPHARILMHQPLGG 128 (208)
T ss_dssp HHHHHTS----CTTCEEECTTCEEECCCC---
T ss_pred HHHHhCC----CcCCEEEcCCcEEEEeccccc
Confidence 6666654 321268999999999998753
No 143
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=96.90 E-value=0.00035 Score=86.64 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=61.8
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc--------------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM-------------------------------------------- 723 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM-------------------------------------------- 723 (2267)
..|.+|.+|+|.+++|++||.|++||+|++|+.-..
T Consensus 44 ~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~ 123 (369)
T 1vf7_A 44 AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQ 123 (369)
T ss_dssp EEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred EEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999975211
Q ss_pred -------------ceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCC
Q 000092 724 -------------CMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDD 758 (2267)
Q Consensus 724 -------------~~~l~ap~~G~v~~i-~~~G~~v~~G--~~La~l~~~~ 758 (2267)
...|+||.+|+|..+ +.+|+.|.+| ++|++|...+
T Consensus 124 a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 124 SKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred HHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence 358999999999888 9999999995 8999987543
No 144
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=96.87 E-value=0.001 Score=71.28 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=42.2
Q ss_pred cCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 692 APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
...-|.|+-+.+ ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 50 q~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~Vvev 97 (143)
T 3mxu_A 50 QEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEI 97 (143)
T ss_dssp HHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred HhhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 345688888766 78999999999999999999999999999999887
No 145
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.85 E-value=0.00082 Score=71.75 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=43.5
Q ss_pred ecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 691 VAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 691 ~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
.....|.|+-+.. ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 44 Aq~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vvev 92 (137)
T 3tzu_A 44 AVEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEV 92 (137)
T ss_dssp HHHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEE
T ss_pred HHhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEe
Confidence 3456789988866 79999999999999999999999999999999887
No 146
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=96.78 E-value=0.0069 Score=76.24 Aligned_cols=107 Identities=8% Similarity=-0.002 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCC---C-CCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecC--CCCC--c
Q 000092 174 IGSSLIAQAANV---P-TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASW--GGGG--K 244 (2267)
Q Consensus 174 ~~~k~laq~aGV---P-tpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~--GgGG--k 244 (2267)
+..|.++.++++ | +.|... ..+ ...++.+|+.+.++.+| |||++|+-. |+-| -
T Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~-----------~~~-------~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~G 70 (425)
T 3mwd_A 9 QTGKELLYKFICTTSAIQNRFKY-----------ARV-------TPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLG 70 (425)
T ss_dssp HHHHHHHHHHCCCSSCBCSTTCC-----------EEE-------CTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTT
T ss_pred HHHHHHHHHhccccCCccCCcce-----------EEe-------CCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCC
Confidence 567899999999 4 222111 011 12468899999999999 999999966 3322 3
Q ss_pred CeEEECCHHHHHHHHHHHHhhCC--------CCcEEEEEeccc--cceeeEEEEEcCCCCEEEe
Q 000092 245 GIRKVHNDDEVRALFKQVQGEVP--------GSPIFIMKVASQ--SRHLEVQLLCDQYGNVAAL 298 (2267)
Q Consensus 245 GIr~V~s~eEL~~a~~~~~~e~~--------~~~I~VEeyI~g--~rhieVqvl~D~~G~vi~l 298 (2267)
||+++.|++|+.+++.+...... -..++||+.++. .+|+-+.+..|..|.++.+
T Consensus 71 GV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~ 134 (425)
T 3mwd_A 71 LVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLF 134 (425)
T ss_dssp CCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEE
Confidence 79999999999999887763321 135899999964 4899999999988777655
No 147
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=96.78 E-value=0.0082 Score=71.34 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=72.2
Q ss_pred CCccCHHHHHHHHHHHHHhc--ccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFN--REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~--~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+. ...-+|++..|+|| |..-.|-.|.+++...+.|+++++. |.+.+ |
T Consensus 88 ~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG----------GsV~ag~aIyd~I~~~k~pV~t~v~--G~AASaG 155 (277)
T 1tg6_A 88 MGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCV--GQAASMG 155 (277)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSCSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEc--cEeHHHH
Confidence 57888999999888887643 34689999999999 4556777899999999999999997 55555 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++. +.-..||.|++++++..|.+.
T Consensus 156 ~~Ia~Ag----d~gkr~a~P~S~ImihqP~~g 183 (277)
T 1tg6_A 156 SLLLAAG----TPGMRHSLPNSRIMIHQPSGG 183 (277)
T ss_dssp HHHHHTS----CTTCEEECTTCEEEECCCCCC
T ss_pred HHHHHCC----CcCCEEEecCCEEEEeccccc
Confidence 5555554 211279999999999999654
No 148
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=96.76 E-value=0.0062 Score=69.43 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=72.8
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+... .-|+++..|+|| |..-.+-.|.+.+...+.|+.+++. |.+.+ |
T Consensus 36 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~~~~~I~~~i~~~~~~v~t~~~--G~AaS~g 103 (201)
T 3p2l_A 36 NGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG----------GMVTAGMGVYDTMQFIKPDVSTICI--GLAASMG 103 (201)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHhCCCeEEEEc--CEehhHH
Confidence 6889999999998888876543 579999999999 4456677899999999999999998 65555 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++.. ... .+|.|+|++++-.|.+.
T Consensus 104 ~~i~~ag~--~g~--r~~~p~a~imiH~p~~~ 131 (201)
T 3p2l_A 104 SLLLAGGA--KGK--RYSLPSSQIMIHQPLGG 131 (201)
T ss_dssp HHHHHTSS--TTC--EEECTTCEEEECCCEEE
T ss_pred HHHHHcCc--cCC--EEEcCCCeEEEeccccc
Confidence 56555542 122 68999999999988754
No 149
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=96.75 E-value=0.0075 Score=68.31 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=72.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+.. ..-++++..|||| |..-.+-.|.+++...+.|+++++. |.+.+ |
T Consensus 32 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG----------G~v~a~~~I~~~i~~~~~pV~~~v~--g~AaS~g 99 (193)
T 1yg6_A 32 TGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG----------GVITAGMSIYDTMQFIKPDVSTICM--GQAASMG 99 (193)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred cCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC----------CCHHHHHHHHHHHHhcCCCEEEEEe--eeHHHHH
Confidence 588889999999999886643 4679999999999 4556777889999999999999997 55555 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++. +.-..+|.|++++++-.|.+.
T Consensus 100 ~~Ia~ag----~~~~r~a~p~s~i~ih~p~~~ 127 (193)
T 1yg6_A 100 AFLLTAG----AKGKRFCLPNSRVMIHQPLGG 127 (193)
T ss_dssp HHHHHTS----CTTCEEECTTCEEEECCCEEE
T ss_pred HHHHHCC----CcCcEEEecCcEEEEEecccc
Confidence 6665554 211269999999999998753
No 150
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.62 E-value=0.003 Score=78.06 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=61.3
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCC
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM----KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~~~ 759 (2267)
.-++||..| +++..++.|+.|++||+|+.|+.| +|+.+|+||.+|+|... .....|..|+.|+.|....+
T Consensus 268 ~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~-~~~~~V~~Gd~l~~ia~~~~ 341 (354)
T 3cdx_A 268 AYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG-AGPGRVTRGDAVAVVMEDYN 341 (354)
T ss_dssp GEEECSSCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE-ECSSEECTTCEEEEEEEECC
T ss_pred EEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE-eCCCccCCCCEEEEEeeecC
Confidence 347899999 788889999999999999999996 89999999999998755 46788999999999976543
No 151
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.58 E-value=0.00036 Score=86.13 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
....|.+|.+|+|.+++|++||+|++||+|++|+.-
T Consensus 31 ~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 31 NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 356799999999999999999999999999999863
No 152
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=96.55 E-value=0.00094 Score=72.87 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=58.0
Q ss_pred CCceecCCCceeEEEEccCCCEEcC----CCcEEEEEccccceeeecCCCcEEEE-------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQF------------------------- 737 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~----G~~l~~iEaMKM~~~l~ap~~G~v~~------------------------- 737 (2267)
+..|.||+.|+|+.+. +..|.|-+ |+-++...+ +..++||.+|+|..
T Consensus 7 ~~~i~aP~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGid 82 (154)
T 2gpr_A 7 NLKVLAPCDGTIITLD-EVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLD 82 (154)
T ss_dssp CEEEECSSSEEEECGG-GSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSS
T ss_pred CCEEEecCCeEEEEee-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcc
Confidence 4679999999999984 77888887 899998887 47999999999986
Q ss_pred ----------e-eCCCCccCCCCEEEEEec
Q 000092 738 ----------K-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 738 ----------i-~~~G~~v~~G~~La~l~~ 756 (2267)
+ +++||.|.+||+|+++++
T Consensus 83 Tv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 83 TVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp GGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred hhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence 3 889999999999999974
No 153
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=96.29 E-value=0.0018 Score=71.16 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=59.8
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcC----CCcEEEEEccccceeeecCCCcEEEEe---------------------
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK--------------------- 738 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~----G~~l~~iEaMKM~~~l~ap~~G~v~~i--------------------- 738 (2267)
..++..|.||+.|+|+.+ .+..|.|-+ |+-++.... +..++||.+|+|..+
T Consensus 9 p~~~~~i~aP~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHI 84 (162)
T 1ax3_A 9 EIGEEVFVSPITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHF 84 (162)
T ss_dssp TTCCSSCCCCCSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEEC
T ss_pred CCCCCEEEecCceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEE
Confidence 445667999999999997 778888887 899998887 789999999999754
Q ss_pred ---------------eCCCCccCCCCEEEEEecC
Q 000092 739 ---------------MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 739 ---------------~~~G~~v~~G~~La~l~~~ 757 (2267)
+++||.|.+||+|++++++
T Consensus 85 GidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (162)
T 1ax3_A 85 GIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp SSSTTTTTTTTEEESCCCCSEECSEEEEEEECHH
T ss_pred CccchhcCCCccEEEEeCCCEEcCCCEEEEECHH
Confidence 6689999999999999753
No 154
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=96.25 E-value=0.015 Score=78.34 Aligned_cols=111 Identities=8% Similarity=-0.039 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecCCCCCc----CeEE
Q 000092 174 IGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGK----GIRK 248 (2267)
Q Consensus 174 ~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGk----GIr~ 248 (2267)
+..|.++.++++|..+-.. ......+ ..-++.+|+.+.++.+| ||||+||-.-.||| ||++
T Consensus 9 y~aK~ll~~~~~~~~~~~~-------~~~~~~v-------~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL 74 (829)
T 3pff_A 9 QTGKELLYKFICTTSAIQN-------RFKYARV-------TPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGV 74 (829)
T ss_dssp HHHHHHHHHHCCCSSCBCS-------TTCCEEE-------CTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEE
T ss_pred HHHHHHHHHhCcccccccc-------CCceEEe-------CCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEE
Confidence 5688999999998322100 0000001 12467899999999998 99999996644443 7889
Q ss_pred ECCHHHHHHHHHHHHhhCC--------CCcEEEEEeccc--cceeeEEEEEcCCCCEEEe
Q 000092 249 VHNDDEVRALFKQVQGEVP--------GSPIFIMKVASQ--SRHLEVQLLCDQYGNVAAL 298 (2267)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~--------~~~I~VEeyI~g--~rhieVqvl~D~~G~vi~l 298 (2267)
+.|++|+.+++.+...... -..++||++++. .+|+-+.+..|..|.++.+
T Consensus 75 ~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~ 134 (829)
T 3pff_A 75 NLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLF 134 (829)
T ss_dssp EECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEE
T ss_pred ECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEE
Confidence 9999999999887654321 135899999964 4899999999988777654
No 155
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=96.15 E-value=0.012 Score=72.80 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=87.6
Q ss_pred hCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-------cc--eeeEEEEEcCCCCEEEec
Q 000092 229 VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-------SR--HLEVQLLCDQYGNVAALH 299 (2267)
Q Consensus 229 IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g-------~r--hieVqvl~D~~G~vi~l~ 299 (2267)
-+.++|+||..|+.|+||+++++.+++.+.++.. +...+||+||+. ++ ++.+-++....-. +.++
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~-----~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~-vy~y 219 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ-----GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYN-IYLY 219 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHHH-----TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCC-EEEC
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc-----CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCE-EEEE
Confidence 4688999999999999999999999998776532 357999999974 33 4445555543111 1111
Q ss_pred ----cccc-------------------ccccccce-EE--EecC---------------CCCCCHHHHHHHHHHHHHHHH
Q 000092 300 ----SRDC-------------------SVQRRHQK-II--EEGP---------------ITVAPLETVKKLEQAARRLAK 338 (2267)
Q Consensus 300 ----~Rdc-------------------svqrr~qK-ii--eeaP---------------a~~l~~e~~~eL~~~A~rla~ 338 (2267)
.|-| ++|..+.. .. +.+. .......+..+|.+++.....
T Consensus 220 ~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~ 299 (380)
T 3tig_A 220 REGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLS 299 (380)
T ss_dssp SCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHH
T ss_pred cCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 1112 12221100 00 0000 000113456677777666555
Q ss_pred Hc---------Cc--eeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcC
Q 000092 339 CV---------NY--VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2267)
Q Consensus 339 aL---------Gy--~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G 393 (2267)
++ .+ -....+||++| ++.++++||+|..++-...++ -+|.+-.++++..
T Consensus 300 a~~~~i~~~~~~~~~FEl~G~D~lid-~~l~~wllEVN~~P~~~q~~i-----~~l~~~~~~iavd 359 (380)
T 3tig_A 300 CLEPAISTKYLPYHSFQLFGFDFMVD-KNLKVWLIEVNGAPACAQKLY-----AELCKGIVDLAIS 359 (380)
T ss_dssp HHHHHHCCTTSSSEECEEEEEEEEEB-TTCCEEEEEEESSCCCCTTTH-----HHHHHHHHHHTTT
T ss_pred HHHHHhhhcccCCceEEEEeEEEEEc-CCCcEEEEEEeCCCCccHHhH-----HHHHHHHHHHhcc
Confidence 42 23 26778999999 578999999999988653322 2367777777765
No 156
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.02 E-value=0.012 Score=71.92 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=59.3
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecC
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM----KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~ 757 (2267)
...-|+||..| ++...|+.||.|++||+|++|..+ +...+|+||.+|+|...- ..-.|.+|+.|+.|...
T Consensus 256 ~~~~v~A~~~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~-~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 256 GDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH-FPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp SCCCEECSSCE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE-CSSEECTTCEEEEEECB
T ss_pred CcEEEeCCCCe-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe-CCCccCCCCEEEEEecc
Confidence 34568999999 667789999999999999999986 568999999999987652 34678899999998754
No 157
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=96.00 E-value=0.0031 Score=69.22 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=56.1
Q ss_pred CceecCCCceeEEEEccCCCEEcC----CCcEEEEEccccceeeecCCCcEEEEe-------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK------------------------- 738 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~----G~~l~~iEaMKM~~~l~ap~~G~v~~i------------------------- 738 (2267)
..|.||+.|+|+.+. +..|.|-+ |+-++.... +..++||.+|+|..+
T Consensus 13 ~~i~aP~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidT 88 (161)
T 1f3z_A 13 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT 88 (161)
T ss_dssp EEEECSSCEEEEEGG-GSSSHHHHTTSSCEEEEEEEC---SSEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSG
T ss_pred cEEEecCCeEEEEeE-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccc
Confidence 459999999999975 77888877 888988887 478999999999755
Q ss_pred -----------eCCCCccCCCCEEEEEec
Q 000092 739 -----------MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 739 -----------~~~G~~v~~G~~La~l~~ 756 (2267)
+++||.|.+||+|+++++
T Consensus 89 V~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 89 VELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred hhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 778999999999999974
No 158
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=95.99 E-value=0.0074 Score=65.49 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=40.9
Q ss_pred CCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 693 ETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 693 PmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
..-|.|+-+.+ ++|++|++|+++++||++|...+|.||.+|+|..+
T Consensus 56 ~~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vvev 102 (155)
T 3hgb_A 56 SALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV 102 (155)
T ss_dssp HHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred HhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 34577877755 78999999999999999999999999999999887
No 159
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=95.97 E-value=0.023 Score=64.87 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
.||.+.+..+..+...+...+.+ .-||.+..|+||-.-...-+.-|..-.|-.|.+.+...+.|+.+++. |-+.+
T Consensus 33 l~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~~~~V~t~~~--G~AaS~ 110 (205)
T 4gm2_A 33 LSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCL--GKAYGI 110 (205)
T ss_dssp ECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHSSSCEEEEEE--EEEETH
T ss_pred ECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCEEEEEE--eeehhH
Confidence 47899999888887776665543 58999999999932111112226667888999999999999999998 76666
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccchh
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2050 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav 2050 (2267)
|+.++++.. ... .+|.|+|++-+=.|.+.+
T Consensus 111 as~il~aG~--~gk--R~~lP~a~iMIHqP~~~~ 140 (205)
T 4gm2_A 111 ACILASSGK--KGY--RFSLKNSSFCLNQSYSII 140 (205)
T ss_dssp HHHHHTTSC--TTC--EEECTTCEEEECCCCCCC
T ss_pred HHHHHhcCC--CCC--EEecCCCEEEEecCcccc
Confidence 444444432 223 688999999888886543
No 160
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=95.80 E-value=0.19 Score=66.18 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHhccc-CC-cEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-hhHhh
Q 000092 1945 FPDSATKTAQALMDFNRE-EL-PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GAWVV 2021 (2267)
Q Consensus 1945 ~p~sa~K~arai~~a~~~-~l-PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-Ga~vv 2021 (2267)
....+..+.++++.+... ++ -||+-.|++|.+. ... ......+..+.....|+|++|- |-+.| |.|++
T Consensus 320 ~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~---~~~----~~i~~~i~~l~~~~kPVia~v~--g~AasgG~~iA 390 (593)
T 3bf0_A 320 GNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSV---TAS----EVIRAELAAARAAGKPVVVSMG--GMAASGGYWIS 390 (593)
T ss_dssp TSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECH---HHH----HHHHHHHHHHHHTTCCEEEEEE--EEEETHHHHTT
T ss_pred chhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCH---HHH----HHHHHHHHHHHhCCCCEEEEEC--CChHHHHHHHH
Confidence 455678888888888654 43 4666678887322 111 1234566777788899999995 55544 55555
Q ss_pred hccccCCccceeecccccEEEeeCc
Q 000092 2022 VDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2022 ~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+++ |. ++|.|++.+|..++
T Consensus 391 ~aa----D~--iva~p~a~~Gsigv 409 (593)
T 3bf0_A 391 TPA----NY--IVANPSTLTGSIGI 409 (593)
T ss_dssp TTC----SE--EEECTTCEEECCCE
T ss_pred HhC----CE--EEECCCCEeeccee
Confidence 554 77 99999999998774
No 161
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=95.58 E-value=0.019 Score=76.61 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=66.7
Q ss_pred cCeEEEEEEE-eecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeec---------------ccceEEE--E
Q 000092 613 EGSKYRIDMV-RRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE---------------AAGTRLL--I 674 (2267)
Q Consensus 613 ~g~~Y~v~v~-~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~---------------~~~~~v~--v 674 (2267)
+|..+.+... ..+...+.+.+||..+.+.+... ++.+.+..+|.++.+..... .....+. .
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~ 619 (681)
T 3n6r_A 541 DGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKI-SGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPM 619 (681)
T ss_dssp TSCEEEEEECCCTTCSEEEEEETTEEEEEEEEEE-TTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCS
T ss_pred CCcEEEEEEEecCCCeEEEEEECCEEEEEEEEEe-CCEEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCC
Confidence 4455444321 11333477888888888877655 46788888888877764321 0111111 1
Q ss_pred cCce-----------------eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 675 DGRT-----------------CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 675 ~g~t-----------------~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.|+- +.++...-...|+||..|+|.+++|++||.|+.||+|++||
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 1111 11111222346999999999999999999999999999986
No 162
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=95.46 E-value=0.037 Score=64.30 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=35.5
Q ss_pred CceEEEEE---cCcccchhhhhhccCCeEEEecCCcceecchH
Q 000092 1742 ETFTLTYV---TGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1781 (2267)
Q Consensus 1742 ~iptis~v---tg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~ 1781 (2267)
..|++++| .|.+.|+|++++.-||+++|.+++.++..+|.
T Consensus 67 ~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 67 KIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI 109 (230)
T ss_dssp SSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEE
T ss_pred CCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccce
Confidence 36999999 99999999999999999999999987765553
No 163
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.85 E-value=0.035 Score=68.93 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc------cccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV------MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa------MKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~ 756 (2267)
..-++||.+|. +...|+.||.|++||+|++|.- -.-..+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 290 ~~~v~A~~~Gl-~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~-~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 290 YRKFHAPKAGM-VEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH-FASASVHQGTELYKVMT 363 (368)
T ss_dssp EEEEECSSCEE-EEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE-CSSSEECTTCEEEEEEE
T ss_pred cEEEecCCCEE-EEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE-eCCCccCCCCEEEEEee
Confidence 34589999995 4589999999999999999998 346689999999988666 33377999999998864
No 164
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.33 E-value=0.02 Score=57.91 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 712 DTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 712 G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
|...+.+|.|+....|.||.+|+|..+ +++|+.|++||+|++|+.... ...-..||.|..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~-~~~i~Ap~~G~V 65 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKM-IMTLNVQERGRV 65 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTE-EEEEECSSSEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecce-EEEEEcCCCEEE
Confidence 455678899999999999999999888 999999999999999986532 122235666654
No 165
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=94.16 E-value=0.031 Score=74.63 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
-...|+||..|+|.+++|++||.|+.||+|++||.
T Consensus 638 ~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 638 MEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp -----------------------------------
T ss_pred eeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 34679999999999999999999999999999984
No 166
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=92.91 E-value=0.11 Score=72.92 Aligned_cols=104 Identities=22% Similarity=0.422 Sum_probs=82.3
Q ss_pred eEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeec
Q 000092 650 LLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729 (2267)
Q Consensus 650 ~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~a 729 (2267)
+.+.+||+.+.+.+.+...... ..........++..|.|||||+|++|+|++||.|++||+|++||+|||+++|+|
T Consensus 1044 ~~~e~nG~~~~v~v~~~~~~~~----~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~a 1119 (1150)
T 3hbl_A 1044 IYYAMNGQARRIYIKDENVHTN----ANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQA 1119 (1150)
T ss_dssp EEEEETTEEEEEEEECCCSSSC----CCCCCBCCTTCSSEEECSSSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEEC
T ss_pred EEEEECCeEEEEeccccccccc----ccccccCCCCCCceeecCceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEec
Confidence 4556666666666554332110 001112245667899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 730 PASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 730 p~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
|.+|+|+.+ +++|+.|+.|++|++|+.+
T Consensus 1120 p~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1120 PFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred CCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 999999999 9999999999999999865
No 167
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*
Probab=92.76 E-value=0.79 Score=53.18 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCCC-CCCchh---------hhhhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWRG-FSGGQR---------DLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~G-f~~G~~---------~e~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.+.+..+-+|+|.-.++ |+.|.. .......+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 103 (233)
T 3r6h_A 26 NVLGPTMQQALNEAIDAADRDNVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACT-- 103 (233)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 578889999999999888766666777755432 665532 11112334456778889999999999996
Q ss_pred CcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||++ +++. .|+ ++|.++++++.
T Consensus 104 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 130 (233)
T 3r6h_A 104 GHAIAMGAFLLCS----GDH--RVAAHAYNVQA 130 (233)
T ss_dssp SEEETHHHHHHTT----SSE--EEECTTCCEEC
T ss_pred CcchHHHHHHHHh----CCE--EEEeCCcEEEC
Confidence 66666554 3443 477 88888888876
No 168
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=92.44 E-value=0.078 Score=51.07 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=32.6
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
.....|+||..|+|.++++++|+.|.+|++|+.|+.
T Consensus 41 ~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 41 KASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp SSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred CceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 345689999999999999999999999999999974
No 169
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=91.90 E-value=3.6 Score=48.98 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=66.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.++......++++.+.. ..+-+|+|.-.+ .|+.|..-. ..........++..+..+.+|+|+.|-
T Consensus 45 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 123 (277)
T 4di1_A 45 NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVT- 123 (277)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 57889999999999998865 467777776543 377664211 112233456678889999999999996
Q ss_pred CCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.| |..+++. .|+ ++|.++++++.
T Consensus 124 -G~a~GgG~~Lala----cD~--ria~~~a~f~~ 150 (277)
T 4di1_A 124 -GYALGAGLTLALA----ADW--RVSGDNVKFGA 150 (277)
T ss_dssp -SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred -CeEehhHHHHHHh----CCE--EEEcCCCEEEC
Confidence 66666 4444554 477 88889988876
No 170
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=91.83 E-value=0.051 Score=72.52 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=59.9
Q ss_pred eeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccCC
Q 000092 606 SQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDH 685 (2267)
Q Consensus 606 ~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~ 685 (2267)
..+.+.+||+.|.+++...+...... . .........+.+...+.|....+.+++. -.|.-+..-+.++...
T Consensus 614 ~~~~vevnG~~~~v~v~~~~~~~~~~-----~-~~~a~~~~~~~v~ap~~G~V~~v~V~~G---d~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 614 RQVFFELNGQLRSILVKDTQAMKEMH-----F-HPKALKDVKGQIGAPMPGKVIDIKVVAG---AKVAKGQPLCVLSAMK 684 (718)
T ss_dssp EEEEEESSSSEEEEEEECGGGTCC-----------CCCCCSSSCEECSSCEEEEEECSCTT---CCBCTTCCCEEEESSS
T ss_pred EEEEEEECCEEEEEEEeccCcccccc-----c-cccCCCCCCceEeCCCCeEEEEEEeCCC---CeeCCCCEEEEEeccc
Confidence 45778889999999887654321110 0 0000001122344445565554444321 1111111122223223
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-...|+||..|+|.++.|++|+.|..||+|++||
T Consensus 685 me~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 685 METVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred ceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 3467999999999999999999999999999875
No 171
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=91.65 E-value=0.099 Score=50.02 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 44 TVKIPSPVRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EEECCCCCCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 3579999999999999999999999999999873
No 172
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=91.38 E-value=1.1 Score=53.08 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=55.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec----------chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+. =...-
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~vG~~~A~ellltg~~i~A~-eA~~~ 178 (267)
T 3hp0_A 100 PYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKAHYMTLMTKPISVQ-EASEW 178 (267)
T ss_dssp SSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCCBCHH-HHHHH
T ss_pred CCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHHC
Confidence 4699999999999999999999999999999764432 2222333344321 0111122222 13468
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
|+++.+++++++.+..+.+.|.-
T Consensus 179 GLV~~vv~~~~~~~~~~a~~la~ 201 (267)
T 3hp0_A 179 GLIDAFDAESDVLLRKHLLRLRR 201 (267)
T ss_dssp TSSSCBCSCTTHHHHHHHHHHTT
T ss_pred CCcceecCCHHHHHHHHHHHHHh
Confidence 99999997654444444444443
No 173
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=91.22 E-value=0.66 Score=54.12 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcc-cCCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhc-CCCCEEEEEccCCcCCc-hhHhhhc
Q 000092 1948 SATKTAQALMDFNR-EELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRT-YKQPVFVYIPMMAELRG-GAWVVVD 2023 (2267)
Q Consensus 1948 sa~K~arai~~a~~-~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~-~~vP~i~vI~~~g~~~G-Ga~vv~~ 2023 (2267)
+...+.++++.+.. .++- ||+-.|++|.+.. . .......+..+.. +..|+|+++- |-+.| |.|+++.
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~--~-----~~~i~~~l~~~~~~~~kPVia~v~--g~a~~gG~~lA~a 100 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVY--E-----SAEIHKKLEEIKKETKKPIYVSMG--SMAASGGYYISTA 100 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHH--H-----HHHHHHHHHHHHHHHCCCEEEEEE--EEEETHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHH--H-----HHHHHHHHHHHHHhCCCeEEEEEC--CeehHhHHHHHHh
Confidence 46777788887754 3444 5555787763221 1 1234455666666 7899999986 55544 5555555
Q ss_pred cccCCccceeecccccEEEeeCc
Q 000092 2024 SRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2024 ~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+|. +||.|++++|..|.
T Consensus 101 ----~D~--i~a~~~a~~g~~Gv 117 (240)
T 3rst_A 101 ----ADK--IFATPETLTGSLGV 117 (240)
T ss_dssp ----SSE--EEECTTCEEECCCC
T ss_pred ----CCe--eEECCCCeEeccce
Confidence 477 89999999988765
No 174
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=91.16 E-value=0.18 Score=47.26 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=36.2
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 726 ~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
.|.||.+|+|..+ +++|+.|++||+|++|+..+. ...-..|+.|.+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~-~~~i~ap~~G~v 47 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKM-EIPIVADRSGIV 47 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTE-EEEEECSSCEEE
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCcc-EEEEECCCCcEE
Confidence 4789999999888 999999999999999987542 222335777764
No 175
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=91.15 E-value=0.13 Score=49.67 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=30.0
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
..|+||..|+|.++.+++|+.|++|++|+.||
T Consensus 49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 46899999999999999999999999999885
No 176
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=91.15 E-value=0.34 Score=59.17 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=54.8
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEc----cccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEV----MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa----MKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~ 756 (2267)
.++||..|.+. ..++.|+.|++||+|+++-- .+...+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 259 ~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~-~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 259 QLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI-RSAMYVQGNEEVAILAR 328 (332)
T ss_dssp EEECSSSEEEE-ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE-ECSEEECTTCEEEEEEE
T ss_pred EEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE-eCCCeeCCCCEEEEEee
Confidence 47899998555 78999999999999999965 678899999999988544 35667889999998864
No 177
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=91.14 E-value=6.8 Score=46.83 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=66.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhh----------hhhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.-. +.|+.|..- ......+....++..+..+.+|+|+.|-
T Consensus 48 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 127 (286)
T 3myb_A 48 NALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVH 127 (286)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 57889999999999998876 46677777544 347776431 1112234456778889999999999997
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ .+++. .|+ ++|.++++++.
T Consensus 128 --G~a~GgG~~lala----cD~--ria~~~a~f~~ 154 (286)
T 3myb_A 128 --GIATAAGCQLVAM----CDL--AVATRDARFAV 154 (286)
T ss_dssp --SCEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred --CeehHHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 6666654 44444 477 88888888775
No 178
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=91.14 E-value=5.6 Score=46.88 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=65.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchh---------------hhhhchHHHHHHHHHHHhcCCCCE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR---------------DLFEGILQAGSTIVENLRTYKQPV 2004 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~---------------~e~~gilk~ga~iv~al~~~~vP~ 2004 (2267)
..+.++......++++.+.. ..+-+|+|.-.++ |+.|.. .......+....++..+..+.+|+
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (263)
T 3l3s_A 28 HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPT 107 (263)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57889999999999998876 4677777755432 444421 111222344567888899999999
Q ss_pred EEEEccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2005 FVYIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2005 i~vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+.|- |.+.||++ +++. .|+ ++|.++++++.
T Consensus 108 IAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 139 (263)
T 3l3s_A 108 IALVE--GIATAAGLQLMAA----CDL--AYASPAARFCL 139 (263)
T ss_dssp EEEES--SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred EEEEC--CEEEHHHHHHHHH----CCE--EEecCCCEEeC
Confidence 99996 66666544 4444 477 88888888876
No 179
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=90.92 E-value=0.14 Score=50.09 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=36.1
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 726 ~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
.|.||.+|+|..+ +++|+.|++||+|++|+..... ..-..||.|.+
T Consensus 7 ~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~-~~i~Ap~~G~v 53 (84)
T 2kcc_A 7 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMI-MTLNVQERGRV 53 (84)
T ss_dssp EECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCE-EEEECSSSEEE
T ss_pred eEECCCCEEEEEEECCCCCEECCCCEEEEEEeccee-EEEECCCCEEE
Confidence 4999999999888 9999999999999999865432 22235666654
No 180
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=90.75 E-value=5.9 Score=46.64 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=64.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh----------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL----------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e----------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.-. +.|+.|..-. .....+.+..++..+..+.+|+|+.|-
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (261)
T 3pea_A 27 NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIH 106 (261)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57889999999999998875 46777777544 3466664311 111223344578889999999999996
Q ss_pred cCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.|| ..+++. .|+ ++|.+++++|.
T Consensus 107 --G~a~GgG~~lala----cD~--ria~~~a~f~~ 133 (261)
T 3pea_A 107 --GAALGGGLEFAMS----CHM--RFATESAKLGL 133 (261)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred --CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 666665 444444 477 88888888775
No 181
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=90.69 E-value=0.23 Score=46.70 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=36.9
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
..|.||.+|+|..+ +++|+.|++||+|++++..+.. ..-..||.|..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~-~~i~ap~~G~v 53 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKME-NEIPSPRDGVV 53 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEE-EEEECSSSEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccce-EEEeCCCCEEE
Confidence 46899999999888 9999999999999999875432 22235677665
No 182
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=90.41 E-value=0.21 Score=59.05 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=59.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~e-A~~ 179 (263)
T 3lke_A 101 PKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEE-ALR 179 (263)
T ss_dssp SSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999874432 2233444555322 11111122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.+++++.+..+.+++|..-+
T Consensus 180 ~GLv~~vv~~~~~l~~~a~~~a~~l 204 (263)
T 3lke_A 180 LGLIQEICENKQELQERVKNYLKAV 204 (263)
T ss_dssp HTSSSEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCcEecCChhHHHHHHHHHHHHH
Confidence 8999999986666666666665443
No 183
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=90.36 E-value=1.6 Score=51.35 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=65.9
Q ss_pred CCccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhhh---------hchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1941 GQVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF---------EGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e~---------~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
...+.++......++++.++...+-+|+|.-.+ .|+.|..-.. .........++..+..+..|+|+.|-
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 106 (254)
T 3isa_A 28 RNALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAH- 106 (254)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 367889999999999988876677778886543 3766642110 01122345677889999999999996
Q ss_pred CCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|.++++++.
T Consensus 107 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 133 (254)
T 3isa_A 107 -GRNFGAGVDLFAA----CKW--RYCTPEAGFRM 133 (254)
T ss_dssp -SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred -CeEeecchhHHHh----CCE--EEEcCCCEEEC
Confidence 6666654 44444 477 88889988876
No 184
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=90.36 E-value=0.18 Score=48.51 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 41 ~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3579999999999999999999999999999874
No 185
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=90.33 E-value=0.25 Score=46.99 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=37.5
Q ss_pred ceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 724 CMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 724 ~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
...|.||.+|+|.++ +++|+.|++||+|++|+..+. ...-..||.|.+
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~-~~~i~Ap~~G~v 56 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKM-ETEINAPTDGKV 56 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTE-EEEEECSSSEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccce-eEEEECCCCEEE
Confidence 457899999999888 999999999999999987542 122235677764
No 186
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=90.30 E-value=0.16 Score=60.30 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=53.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc-----------hHHHHHhhcc-cc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGR-EV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG-----------p~al~~~lG~-ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|. .. .-+...+.+.+ ..
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~e-A~ 185 (275)
T 1dci_A 107 PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADE-AL 185 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHH-HH
T ss_pred CCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHH-HH
Confidence 46999999999999999999999999999998654321 1223333443 11 01111111111 34
Q ss_pred ccCceEEEecCcHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.-|++|.++++..+....+++|
T Consensus 186 ~~GLv~~vv~~~~~l~~~a~~~ 207 (275)
T 1dci_A 186 DSGLVSRVFPDKDVMLNAAFAL 207 (275)
T ss_dssp HHTSSSEEESSHHHHHHHHHHH
T ss_pred HcCCcceecCChHHHHHHHHHH
Confidence 6899999997624444444444
No 187
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=90.23 E-value=9.1 Score=45.16 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh---------hhhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
...+.++......++++.+.. ..+=+|+|.-.+ .|+.|..- ......+....++..+..+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 109 (265)
T 3kqf_A 30 ANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAI 109 (265)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 368899999999999998865 467777776544 37766421 111223445677888999999999999
Q ss_pred ccCCcCCc-hhHhhhccccCCccceeecccccEEEee
Q 000092 2009 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2009 ~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
- |-+.| |..+++.+ |+ ++|.+++++|.-
T Consensus 110 ~--G~a~GgG~~lalac----D~--ria~~~a~f~~p 138 (265)
T 3kqf_A 110 N--GIALGGGTELSLAC----DF--RIAAESASLGLT 138 (265)
T ss_dssp C--SEEETHHHHHHHHS----SE--EEEETTCEEECC
T ss_pred C--CeeehHHHHHHHhC----CE--EEEcCCcEEECc
Confidence 6 66666 44445544 77 888888888753
No 188
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=89.94 E-value=8 Score=46.27 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=66.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh----------------hhchHHHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL----------------FEGILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e----------------~~gilk~ga~iv~al~~~~vP 2003 (2267)
..++++......++++.+.. ..+-+|+|.-.+ .|+.|..-. .....+....++..+..+.+|
T Consensus 46 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 125 (290)
T 3sll_A 46 NAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQP 125 (290)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 58889999999999998875 467777776543 477665310 111234556788889999999
Q ss_pred EEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2004 VFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
+|+.|- |-+.||+ .+++. .|+ ++|.++++++.-+
T Consensus 126 vIAav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 160 (290)
T 3sll_A 126 VIAAIN--GAAIGGGLCLALA----CDV--RVASQDAYFRAAG 160 (290)
T ss_dssp EEEEEC--SEEETHHHHHHHH----SSE--EEEETTCEEECTT
T ss_pred EEEEEC--CeehHHHHHHHHH----CCE--EEEeCCCEEECch
Confidence 999996 6666654 44444 477 8899998887633
No 189
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=89.93 E-value=16 Score=43.40 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=65.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhh-h------------hhchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-L------------FEGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~-e------------~~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
-.+.++-.....++++.+++ ..+-+|+|.-. +.|+.|..- + .....+....++..+..+.+|+|+
T Consensus 37 NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 116 (274)
T 4fzw_C 37 NSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVIC 116 (274)
T ss_dssp SCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 57899999999999998876 46677777543 347666421 0 111223345678889999999999
Q ss_pred EEccCCcCCchhH-hhhccccCCccceeecccccEEEee
Q 000092 2007 YIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2007 vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
.|- |-+.||+. +++. .|+ ++|.++++++.-
T Consensus 117 av~--G~a~GgG~~lala----cD~--ria~~~a~f~~p 147 (274)
T 4fzw_C 117 AVN--GVAAGAGATLALG----GDI--VIAARSAKFVMA 147 (274)
T ss_dssp EEC--SCEETHHHHHHHT----SSE--EEEETTCEEECC
T ss_pred EEC--CceeecCceeeec----cce--EEECCCCEEECc
Confidence 996 66666544 4444 477 889999988763
No 190
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=89.92 E-value=1.1 Score=58.88 Aligned_cols=87 Identities=7% Similarity=0.032 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhccc-C-CcEEEEecCCC-CCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhc
Q 000092 1947 DSATKTAQALMDFNRE-E-LPLFILANWRG-FSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD 2023 (2267)
Q Consensus 1947 ~sa~K~arai~~a~~~-~-lPLv~l~d~~G-f~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~ 2023 (2267)
.++..+.+.++.+... + --|+.-.|++| -+.. ........+..+....+|+++++- .-+-||.|+++.
T Consensus 70 ~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~-------~~~~I~~~i~~~k~~gkpvva~~~--~aas~~y~lAsa 140 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQP-------SMQYIGKALKEFRDSGKPVYAVGE--NYSQGQYYLASF 140 (593)
T ss_dssp EEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHH-------HHHHHHHHHHHHHHTTCCEEEEES--CEEHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHH-------HHHHHHHHHHHHHhcCCeEEEEEc--cchhHHHHHHHh
Confidence 4678888888887543 3 46888899987 2211 122344555556666799999874 433345554544
Q ss_pred cccCCccceeecccccEEEeeCccc
Q 000092 2024 SRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2024 ~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
+|. +||.|++.+++.+|-+
T Consensus 141 ----ad~--i~~~P~~~vg~~g~~~ 159 (593)
T 3bf0_A 141 ----ANK--IWLSPQGVVDLHGFAT 159 (593)
T ss_dssp ----SSE--EEECTTCCEECCCCBC
T ss_pred ----CCE--EEECCCceEEEecccc
Confidence 365 9999999999999954
No 191
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=89.71 E-value=0.18 Score=48.52 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 4579999999999999999999999999999863
No 192
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=89.60 E-value=17 Score=42.36 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=66.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h-------hhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L-------FEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e-------~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
-.++++-......+++.+++ ..+=+|+|.-.+ .|..|..- + .....+....++..+..+.+|+|+.|-
T Consensus 22 NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 99 (254)
T 3hrx_A 22 NAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVN-- 99 (254)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 58899999999999998866 566666665443 36655321 1 122334567788999999999999996
Q ss_pred CcCCchh-HhhhccccCCccceeecccccEEEee
Q 000092 2012 AELRGGA-WVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2012 g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|-+.||+ -+++. .|+ .+|.++|+++.-
T Consensus 100 G~a~GgG~~lala----cD~--ria~~~a~f~~p 127 (254)
T 3hrx_A 100 GVAAGAGMSLALW----GDL--RLAAVGASFTTA 127 (254)
T ss_dssp SEEETHHHHHHTT----CSE--EEEETTCEEECC
T ss_pred CEeeehhhhhhhc----cce--eeEcCCCEEEch
Confidence 6666654 44444 477 888888888763
No 193
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=89.50 E-value=0.16 Score=49.80 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=32.8
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
....|+||..|+|.++.+++|+.|..|++|+.|+..
T Consensus 38 ~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 38 ASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred cEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 346799999999999999999999999999999854
No 194
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=89.28 E-value=2.6 Score=49.89 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--h--------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--L--------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e--------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.+.......++++.+.. ..+-+|+|.-.+ .|+.|..- + .....+....++.++..+.+|+|+.|-
T Consensus 46 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 125 (263)
T 2j5g_A 46 LVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVN 125 (263)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 46788888999999988865 467777776432 25554321 1 011223345678889999999999996
Q ss_pred cCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||..+++.+ |+ ++|.++++++.
T Consensus 126 --G~a~GG~~Lalac----D~--ria~~~a~f~~ 151 (263)
T 2j5g_A 126 --GAALLHSEYILTT----DI--ILASENTVFQD 151 (263)
T ss_dssp --SEECSCGGGGGGC----SE--EEEETTCEECC
T ss_pred --CcchHHHHHHHhC----CE--EEEcCCCEEec
Confidence 7666776666654 77 89999998876
No 195
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=89.16 E-value=0.31 Score=50.31 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.6
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|.|+.+|+|..+ +++|+.|++||+|++|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 57899999999999 9999999999999999865
No 196
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=88.94 E-value=2.8 Score=49.37 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=66.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.+.......++++.+.+ ..+=+|+|.-.+ .|+.|..-. .....+....++..+..+.+|+|+.|-
T Consensus 38 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 116 (257)
T 1szo_A 38 LVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVN- 116 (257)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC-
Confidence 35788889999999988865 466777776543 366654211 011223345678889999999999996
Q ss_pred CCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||...++.+ |+ ++|.++++++.
T Consensus 117 -G~a~GG~~Lalac----D~--ria~~~a~f~~ 142 (257)
T 1szo_A 117 -GPVTNAPEIPVMS----DI--VLAAESATFQD 142 (257)
T ss_dssp -SCBCSSTHHHHTS----SE--EEEETTCEEEC
T ss_pred -CchHHHHHHHHHC----CE--EEEeCCCEEec
Confidence 7677877666664 77 89999998886
No 197
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=88.94 E-value=7.1 Score=45.79 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=66.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhhh---hchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF---EGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e~---~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G 2016 (2267)
..++++......++++.+.. ..+-+|+|.-. +.|+.|..-.. .........++..+..+..|+|+.|- |-+.|
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G~a~G 105 (255)
T 3p5m_A 28 NAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVH--GAAVG 105 (255)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEEC--SEEET
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeC--Ceehh
Confidence 57889999999999998865 46777777554 34776643110 02234456778889999999999996 66666
Q ss_pred h-hHhhhccccCCccceeecccccEEEe
Q 000092 2017 G-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2017 G-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
| ..+++.+ |+ ++|.++++++.
T Consensus 106 gG~~lalac----D~--~ia~~~a~f~~ 127 (255)
T 3p5m_A 106 FGCSLALAC----DL--VVAAPASYFQL 127 (255)
T ss_dssp HHHHHHHHS----SE--EEECTTCEEEC
T ss_pred hHHHHHHHC----CE--EEEcCCcEEeC
Confidence 4 4445544 77 88888888876
No 198
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=88.86 E-value=0.35 Score=56.95 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec--------chHHHHHhhccccccccccCCcccc----ccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT--------GFSALNKLLGREVYSSHMQLGGPKI----MATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt--------Gp~al~~~lG~evy~s~~~lGG~~i----~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+.|-.+ ...-|+
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~pg~~~l~~~vG~~~A~-~l~ltg~~~~a~eA~~~GL 176 (254)
T 3isa_A 98 PSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQAL-SILGSARAFDADEARRIGF 176 (254)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCSHHHHHHHHCHHHHH-HHHTTTCEEEHHHHHHTTS
T ss_pred CCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccHHHHHHHHHcCHHHHH-HHHHhCCCCcHHHHHHCCC
Confidence 4699999999999999999999999999999765433 333444555543210 011222222 346999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000092 1810 VHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
+|.+++++ +..+.+.++..
T Consensus 177 v~~vv~~~-~l~~~a~~~a~ 195 (254)
T 3isa_A 177 VRDCAAQA-QWPALIDAAAE 195 (254)
T ss_dssp SSEECCGG-GHHHHHHHHHH
T ss_pred ccEEeChh-HHHHHHHHHHH
Confidence 99999754 33333444433
No 199
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=88.71 E-value=0.25 Score=49.41 Aligned_cols=34 Identities=6% Similarity=0.090 Sum_probs=31.5
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|++|+.
T Consensus 47 ~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 47 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred EEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4678999999999999999999999999999974
No 200
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=88.66 E-value=13 Score=44.27 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=65.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-h------------hchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------------EGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~------------~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.++......++++.+.. ..+-+|+|.-. +.|+.|..-. . ....+....++..+..+..|+|+
T Consensus 39 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (279)
T 3g64_A 39 NALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIA 118 (279)
T ss_dssp TCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 68899999999999998875 46777777654 3477664311 0 01122345678889999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+ .+++. .|+ ++|.++++++.
T Consensus 119 av~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 148 (279)
T 3g64_A 119 ALH--GVAAGAGAVLALA----ADF--RVADPSTRFAF 148 (279)
T ss_dssp EEC--SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred EEc--CeeccccHHHHHh----CCE--EEEeCCCEEeC
Confidence 996 6666654 44444 477 88888888775
No 201
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=88.61 E-value=4.2 Score=47.51 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=66.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEec-CC-CCCCchhh--hh--------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILAN-WR-GFSGGQRD--LF--------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d-~~-Gf~~G~~~--e~--------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++-.....++++.+.+ ..+-+|+|.- .+ .|+.|..- +. ....+....++..+..+.+|+|+.|
T Consensus 22 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 101 (250)
T 2a7k_A 22 NPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAV 101 (250)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57889999999999998876 4677888865 33 37766521 10 1112234567788999999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeecccccEEEee
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
- |.+.|| ..+++. .|+ ++|.+++++|.-
T Consensus 102 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~p 130 (250)
T 2a7k_A 102 D--GYAIGMGFQFALM----FDQ--RLMASTANFVMP 130 (250)
T ss_dssp C--SEEETHHHHHHTT----SSE--EEEETTCEEECC
T ss_pred C--CeEeHHHHHHHHh----CCE--EEEcCCCEEeCc
Confidence 6 666664 444544 477 889999998873
No 202
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=88.43 E-value=0.46 Score=56.41 Aligned_cols=85 Identities=19% Similarity=0.143 Sum_probs=53.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec----------chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+ +=...-
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~A~~llltg~~i~A-~eA~~~ 177 (268)
T 3i47_A 99 PKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDA-TRAYSL 177 (268)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEH-HHHHHT
T ss_pred CCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHHHHHHHhCHHHHHHHHHcCCccCH-HHHHHc
Confidence 4699999999999999999999999999999865432 1112333333321 001111111 113468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000092 1808 GVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~L 1828 (2267)
|++|.++++ .+..+.+++|.
T Consensus 178 GLV~~vv~~-~~l~~~a~~~a 197 (268)
T 3i47_A 178 NLVQHCVPD-DTLLEFTLKYA 197 (268)
T ss_dssp TSCSEEECG-GGHHHHHHHHH
T ss_pred CCCcEeeCh-hHHHHHHHHHH
Confidence 999999975 34444444443
No 203
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=88.40 E-value=0.32 Score=53.17 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=33.6
Q ss_pred EEccCCCEEcCCCcEEEEEccccc-------eeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMC-------MPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~-------~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
.+|++||+|++||+|+++.--+.. +++.-.- .....+ ...+..|..|+.|..+
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NGGKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp ECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CSSCCCSCBCCEEECTTCEEEEE
T ss_pred EEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CCcceEEEccCceEcCCCEEEEe
Confidence 589999999999999998742222 2222111 111222 3346678889988876
No 204
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=88.37 E-value=0.07 Score=53.41 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
...|+||..|+|.++.+++|+.|..|++|+.||
T Consensus 62 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 62 QNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------------------------------
T ss_pred cEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 467999999999999999999999999999886
No 205
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=88.02 E-value=14 Score=44.07 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh----------hhhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+=+|+|.-.+ .|+.|..- ......+....++..+..+.+|+|+.|-
T Consensus 55 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 134 (287)
T 2vx2_A 55 NTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVN 134 (287)
T ss_dssp TCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57889999999999998876 456777776542 25544321 0111223445678889999999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|.+.||+ .+++. .|+ ++|.++++++.-+
T Consensus 135 --G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 163 (287)
T 2vx2_A 135 --GLATAAGCQLVAS----CDI--AVASDKSSFATPG 163 (287)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTCEEECCG
T ss_pred --CEEEcHHHHHHHh----CCE--EEEcCCCEEECch
Confidence 6666654 44444 477 8889999887633
No 206
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=87.98 E-value=16 Score=42.77 Aligned_cols=95 Identities=20% Similarity=0.143 Sum_probs=66.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--------hchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..++++......++++.+.+ ..+-+|+|.-.+ .|+.|..-.. ...++....++..+..+.+|+|+.|-
T Consensus 22 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 99 (254)
T 3gow_A 22 NAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVN-- 99 (254)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCCChHHHhhcchhHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 58889999999999998865 457777776543 4776642110 11223456788899999999999996
Q ss_pred CcCCch-hHhhhccccCCccceeecccccEEEee
Q 000092 2012 AELRGG-AWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2012 g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|-+.|| ..+++. .|+ ++|.++++++.-
T Consensus 100 G~a~GgG~~lala----cD~--~ia~~~a~f~~p 127 (254)
T 3gow_A 100 GVAAGAGMSLALW----GDL--RLAAVGASFTTA 127 (254)
T ss_dssp SEEETHHHHHHTT----CSE--EEEETTCEEECC
T ss_pred CeeehHHHHHHHH----CCE--EEEcCCCEEeCc
Confidence 666665 444544 477 888888888763
No 207
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=87.84 E-value=0.38 Score=57.31 Aligned_cols=86 Identities=17% Similarity=0.105 Sum_probs=54.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +=...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A-~eA~~ 184 (276)
T 2j5i_A 106 AKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGG-QKAAE 184 (276)
T ss_dssp SSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEH-HHHHH
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccH-HHHHH
Confidence 4699999999999999999999999999999765432 1223444444322 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+.+|..
T Consensus 185 ~GLv~~vv~~-~~l~~~a~~~a~ 206 (276)
T 2j5i_A 185 MGLVNESVPL-AQLREVTIELAR 206 (276)
T ss_dssp HTSSSEEECH-HHHHHHHHHHHH
T ss_pred cCCccEeeCH-HHHHHHHHHHHH
Confidence 8999999964 444455555543
No 208
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=87.79 E-value=0.28 Score=48.21 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCceecCCCceeEEEEccCCC-EEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd-~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+ .|..|++|+.|+.
T Consensus 48 ~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred cceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 457999999999999999999 8999999999984
No 209
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=87.76 E-value=0.52 Score=56.44 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=32.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII 1776 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ 1776 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.
T Consensus 119 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~ 153 (286)
T 3myb_A 119 PAPVIARVHGIATAAGCQLVAMCDLAVATRDARFA 153 (286)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEE
T ss_pred CCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEE
Confidence 46999999999999999999999999999997643
No 210
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=87.75 E-value=5.3 Score=47.24 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-h-----------hchHHHHHHHHHHHhcCCCCEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-----------EGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~-----------~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
...++++......++++.+.. ..+-+|+|.-. +.|+.|..-. . .........++..+..+.+|+|+
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 104 (268)
T 3i47_A 25 HNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIA 104 (268)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 368899999999999998865 45677777543 3477764211 0 01123345678889999999999
Q ss_pred EEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |.+.|| ..+++. .|+ ++|.++++++.
T Consensus 105 av~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (268)
T 3i47_A 105 MVQ--GAAFGGGAGLAAA----CDI--AIASTSARFCF 134 (268)
T ss_dssp EEC--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEC--CEEEhHhHHHHHh----CCE--EEEcCCCEEEC
Confidence 997 666664 444554 477 88888888775
No 211
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=87.56 E-value=0.39 Score=56.16 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=58.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+.+.+|... .-+...+.+. =...
T Consensus 90 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~-eA~~ 168 (243)
T 2q35_A 90 EIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGK-ELAE 168 (243)
T ss_dssp CSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHH-HHHH
T ss_pred CCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHH
Confidence 4699999999999999999999999999999865432 1223444455322 1111122222 1346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.+++ +.+..+.+.+|..-+
T Consensus 169 ~GLv~~vv~-~~~l~~~a~~~a~~l 192 (243)
T 2q35_A 169 RGIPFPVVS-RQDVLNYAQQLGQKI 192 (243)
T ss_dssp TTCSSCEEC-HHHHHHHHHHHHHHH
T ss_pred cCCCCEecC-hhHHHHHHHHHHHHH
Confidence 999999996 445666666665544
No 212
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}
Probab=87.48 E-value=2.9 Score=48.38 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=62.6
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhh--------hhhchHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD--------LFEGILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~--------e~~gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..+.++......++++.+.... -+|+|.-.+ .|+.|..- ......+....++.++..+.+|+|+.|- |
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~-~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 103 (232)
T 3ot6_A 27 NAISPDVIIAFNAALDQAEKDR-AIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACP--G 103 (232)
T ss_dssp TCBCHHHHHHHHHHHHHHHHTT-CEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECC--E
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-CEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEEC--C
Confidence 5788899999999998887543 466664433 26666421 1112234456788889999999999996 6
Q ss_pred cCCchhH-hhhccccCCccceeecccc-cEEEe
Q 000092 2013 ELRGGAW-VVVDSRINSDHIEMYADRT-AKGNV 2043 (2267)
Q Consensus 2013 ~~~GGa~-vv~~~~~n~d~~~~~A~p~-A~~gv 2043 (2267)
.+.||++ +++. .|+ ++|.++ ++++.
T Consensus 104 ~a~GgG~~lala----cD~--ria~~~~a~f~~ 130 (232)
T 3ot6_A 104 HAVAKGAFLLLS----ADY--RIGVAGPFSIGL 130 (232)
T ss_dssp EEETHHHHHHTT----SSE--EEEECSSCCEEC
T ss_pred EeehHHHHHHHH----CCE--EEEeCCCcEEEC
Confidence 6666544 4444 477 888887 67775
No 213
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=87.32 E-value=0.53 Score=55.62 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=54.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ecc---hHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LTG---FSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------ltG---p~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +.+ ..-+-+.+|... .-+...+.+ +=...-
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~g~~~~l~r~vG~~~A~~l~ltg~~~~A-~eA~~~ 182 (263)
T 3l3s_A 104 PKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDA-DWALAA 182 (263)
T ss_dssp SSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCCHHHHHHHHTTSCHHHHHHHHHHCCEEEH-HHHHHH
T ss_pred CCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCH-HHHHHC
Confidence 46999999999999999999999999999987643 331 122333334321 001111111 223468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000092 1808 GVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
|++|.+++ +.+..+.+++|..
T Consensus 183 GLv~~vv~-~~~l~~~a~~~a~ 203 (263)
T 3l3s_A 183 GLINRILP-EAALATHVADLAG 203 (263)
T ss_dssp TSSSEECC-HHHHHHHHHHHHH
T ss_pred CCccEEeC-HHHHHHHHHHHHH
Confidence 99999997 4455555555543
No 214
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}
Probab=87.28 E-value=0.45 Score=56.23 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=54.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCC-cceec-----------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQ-PIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a-~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++ .+.+. |..-+-+.+|... .-+...+.+. =..
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~-eA~ 179 (265)
T 2ppy_A 101 PQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQ-EAL 179 (265)
T ss_dssp SSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHH-HHH
T ss_pred CCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHH-HHH
Confidence 46999999999999999999999999999999 54432 2223444555322 1111222222 234
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
..|++|.+++++ +..+.+++|.
T Consensus 180 ~~GLv~~vv~~~-~l~~~a~~~a 201 (265)
T 2ppy_A 180 EIGLVNRVFPQA-ETRERTREYA 201 (265)
T ss_dssp HHTSSSEEECGG-GHHHHHHHHH
T ss_pred HCCCcceecCHH-HHHHHHHHHH
Confidence 699999999753 3344444443
No 215
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=87.21 E-value=0.64 Score=55.06 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc-----------hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG-----------p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+.. ..-+-+.+|... .-+...+.+ +=...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a-~eA~~ 180 (265)
T 3qxi_A 102 AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSA-ERAHA 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCH-HHHHH
Confidence 57999999999999999999999999999997644322 122333334321 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~ 200 (265)
T 3qxi_A 181 LGMVNVLAEPG-AALDAAIAL 200 (265)
T ss_dssp TTSCSEEECTT-CHHHHHHHH
T ss_pred CCCccEeeChh-HHHHHHHHH
Confidence 89999999754 334444444
No 216
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=87.17 E-value=0.46 Score=56.67 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=51.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEe-cCCcceec-----------chHHHHHhhccccc----cccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~-~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-+-..+|.... -+...+.+.+ ..
T Consensus 112 ~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~e-A~ 190 (280)
T 1pjh_A 112 SKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI-MC 190 (280)
T ss_dssp CSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHH-HH
T ss_pred CCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HH
Confidence 46999999999999999999999999999 88764432 22334555554221 1111122211 34
Q ss_pred ccCceEEEecCc
Q 000092 1806 TNGVVHLTVSDD 1817 (2267)
Q Consensus 1806 ~nGv~d~~v~dd 1817 (2267)
.-|++|.+++++
T Consensus 191 ~~GLv~~vv~~~ 202 (280)
T 1pjh_A 191 ENGFISKNFNMP 202 (280)
T ss_dssp HTTCCSEECCCC
T ss_pred HCCCcceeeCCc
Confidence 699999999875
No 217
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=87.08 E-value=4 Score=47.88 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h---------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F---------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~---------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..++++......++++.+.+ ..+-+|+|.-.+ .|+.|..-. . .........++..+..+.+|+|+.|-
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 107 (256)
T 3qmj_A 28 NAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVN 107 (256)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 68899999999999998866 467777776543 366664311 0 11123446778889999999999997
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|.++++++.
T Consensus 108 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 134 (256)
T 3qmj_A 108 --GLGVGIGATILGY----ADL--AFMSSTARLKC 134 (256)
T ss_dssp --SEEETHHHHGGGG----CSE--EEEETTCEEEC
T ss_pred --CeehhHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 6666654 44444 477 88888888776
No 218
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=87.08 E-value=11 Score=44.43 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=66.4
Q ss_pred CCccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhh----hhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCC
Q 000092 1941 GQVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD----LFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR 2015 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~----e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~ 2015 (2267)
...+.++......++++.+....+-+|+|.-.+ .|+.|..- ......+....++..+..+.+|+|+.|- |-+.
T Consensus 42 ~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G~a~ 119 (264)
T 3he2_A 42 RNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAIN--GPAI 119 (264)
T ss_dssp TTCBCHHHHHHHHHHHHCC---CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEEC--SCEE
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC--CcEE
Confidence 368899999999999998876577777776443 46666421 1223345566788889999999999997 6666
Q ss_pred chh-HhhhccccCCccceeecccccEEEe
Q 000092 2016 GGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2016 GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
||+ .+++. .|+ ++|.++++++.
T Consensus 120 GgG~~lala----cD~--ria~~~a~f~~ 142 (264)
T 3he2_A 120 GAGLQLAMQ----CDL--RVVAPDAFFQF 142 (264)
T ss_dssp THHHHHHHH----SSE--EEECTTCEEEC
T ss_pred cchhHHHHh----CCE--EEEcCCCEEEC
Confidence 654 44544 477 89999998876
No 219
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=86.88 E-value=19 Score=41.95 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=64.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhh--hhh----c---hHH--H-HHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD--LFE----G---ILQ--A-GSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~--e~~----g---ilk--~-ga~iv~al~~~~vP~i~v 2007 (2267)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|..- +.. . ... . ...++..+..+.+|+|+.
T Consensus 21 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 100 (253)
T 1uiy_A 21 NPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAA 100 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999998866 45666666543 347766421 100 0 111 1 456677889999999999
Q ss_pred EccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.|| ..+++. .|+ ++|.+++++|.
T Consensus 101 v~--G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 129 (253)
T 1uiy_A 101 VN--GPAVAGGAGLALA----CDL--VVMDEEARLGY 129 (253)
T ss_dssp EC--SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred EC--CeeeHHHHHHHHh----CCE--EEEcCCcEEeC
Confidence 96 666664 444554 477 89999999887
No 220
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=86.84 E-value=0.4 Score=58.69 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=52.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchH--------HHHHhhccccccccccCCcccc----ccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS--------ALNKLLGREVYSSHMQLGGPKI----MATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~--------al~~~lG~evy~s~~~lGG~~i----~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-.. .+-+.+|.... ...-|-|-.+ ...-|+
T Consensus 157 ~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g~l~~~vG~~~A-~ellltG~~i~A~eA~~~GL 235 (333)
T 3njd_A 157 DKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLGDQRA-KRLLFTGDCITGAQAAEWGL 235 (333)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTCCHHHHHCHHHH-HHHHTTCCEEEHHHHHHTTS
T ss_pred CCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHCCC
Confidence 5799999999999999999999999999999765443221 12222332110 0001112122 346899
Q ss_pred eEEEecCcHHHHHHHHHHH
Q 000092 1810 VHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~L 1828 (2267)
++.+++++ +..+.+++|.
T Consensus 236 V~~vv~~~-~l~~~a~~lA 253 (333)
T 3njd_A 236 AVEAPDPA-DLDARTERLV 253 (333)
T ss_dssp SSBCCCGG-GHHHHHHHHH
T ss_pred ccEecChH-HHHHHHHHHH
Confidence 99999743 4444444443
No 221
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=86.75 E-value=0.32 Score=57.93 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=56.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~e-A~~ 184 (275)
T 3hin_A 106 RVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAE-GVV 184 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999999764433 2233455555322 11112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+++|..-
T Consensus 185 ~GLv~~vv~~~-~l~~~a~~~a~~ 207 (275)
T 3hin_A 185 HGFSQYLIENG-SAYDKALELGNR 207 (275)
T ss_dssp HTSCSEEESSS-CHHHHHHHHHHH
T ss_pred CCCCCEEeChh-HHHHHHHHHHHH
Confidence 89999999754 344455555443
No 222
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*
Probab=86.51 E-value=1 Score=56.91 Aligned_cols=89 Identities=21% Similarity=0.108 Sum_probs=57.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec----------chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...-
T Consensus 284 pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g~~~L~rlvG~~~A~ellLtG~~i~A~E-A~~~ 362 (440)
T 2np9_A 284 EKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVSRQVILEGRRIWAKE-PEAR 362 (440)
T ss_dssp CCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCEETTS-GGGG
T ss_pred CCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHHC
Confidence 4799999999999999999999999999998764332 1112233333211 11111222222 3578
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|++|.++++ .+....+..+..-++
T Consensus 363 GLV~~Vvp~-~eL~~~a~~~A~~la 386 (440)
T 2np9_A 363 LLVDEVVEP-DELDAAIERSLTRLD 386 (440)
T ss_dssp GTCSEEECH-HHHHHHHHHHHHTTC
T ss_pred CCCcEecCh-HHHHHHHHHHHHHhC
Confidence 999999974 455666667766553
No 223
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=86.48 E-value=4.7 Score=47.44 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=63.6
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecC-CCCCCchhh--hhh-----------chHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRD--LFE-----------GILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~-~Gf~~G~~~--e~~-----------gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.++......++++.+.....=+|+|.-. +.|+.|..- +.. ...+....++..+..+.+|+|+.
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 107 (261)
T 2gtr_A 28 NSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA 107 (261)
T ss_dssp TEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5788899999999998876543345666543 347777531 110 11122446677888999999999
Q ss_pred EccCCcCCchhH-hhhccccCCccceeecccccEEEeeC
Q 000092 2008 IPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2008 I~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|- |.+.||+. +++. .|+ ++|.++++++.-+
T Consensus 108 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe 138 (261)
T 2gtr_A 108 VN--GPAIGLGASILPL----CDV--VWANEKAWFQTPY 138 (261)
T ss_dssp EC--SCEETHHHHTGGG----SSE--EEEETTCEEECCT
T ss_pred EC--CeEeeHHHHHHHh----CCE--EEEcCCCEEeCch
Confidence 96 66666544 3443 477 8888988887633
No 224
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}
Probab=86.45 E-value=18 Score=42.57 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=64.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEec-CC-CCCCchhh--hh------hchHHHH-HHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILAN-WR-GFSGGQRD--LF------EGILQAG-STIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d-~~-Gf~~G~~~--e~------~gilk~g-a~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.- .+ .|+.|..- +. ....+.. ..++..+..+.+|+|+.|-
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 109 (265)
T 2ppy_A 30 NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLE 109 (265)
T ss_dssp CCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 57888999999999998866 4667777765 33 36655421 10 1122334 5677889999999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeeccccc-EEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTA-KGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A-~~gv 2043 (2267)
|-+.||+ .+++. .|+ ++|.+++ ++|.
T Consensus 110 --G~a~GgG~~lala----cD~--ria~~~ag~f~~ 137 (265)
T 2ppy_A 110 --GHTVGGGLEMALA----CDL--RFMGDEAGKIGL 137 (265)
T ss_dssp --SEEETHHHHHHHT----SSE--EEEETTCCCEEC
T ss_pred --CEEeeHHHHHHHh----CCE--EEEeCCCCEEEC
Confidence 6666654 44444 477 8999999 8876
No 225
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=86.35 E-value=0.52 Score=56.00 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=57.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+. ++=...
T Consensus 105 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~-a~eA~~ 183 (272)
T 1hzd_A 105 PVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD-GKEAKA 183 (272)
T ss_dssp SSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEE-HHHHHH
T ss_pred CCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCC-HHHHHH
Confidence 4699999999999999999999999999999764432 2223444445322 01111221 122346
Q ss_pred cCceEEEecCcH---HHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDL---EGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~---e~~~~i~~~Lsyl 1831 (2267)
-|++|.+++++. ++.+.++++..-+
T Consensus 184 ~GLv~~vv~~~~l~~~~~~~a~~~a~~l 211 (272)
T 1hzd_A 184 VGLISHVLEQNQEGDAAYRKALDLAREF 211 (272)
T ss_dssp HTSCSEEECCCTTSCHHHHHHHHHHHTT
T ss_pred CCCcceecChhhhhHHHHHHHHHHHHHH
Confidence 899999998664 3455555555433
No 226
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}
Probab=86.28 E-value=48 Score=40.76 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=66.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh--hh----------hchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD--LF----------EGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~--e~----------~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
-++.++......++++.++. ..+-+|+|.-.+ .|..|..- +. .........++..+..+..|+|+
T Consensus 31 NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 110 (353)
T 4hdt_A 31 NSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVS 110 (353)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 57899999999999998876 577888887554 58877531 11 11123345677889999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+ .+++. .|+ .+|.++|+++.
T Consensus 111 av~--G~a~GgG~~lal~----cD~--ria~~~a~f~~ 140 (353)
T 4hdt_A 111 IMD--GIVMGGGVGVGAH----GNV--RVVTDTTKMAM 140 (353)
T ss_dssp EEC--BEEETHHHHHHTT----SSE--EEECTTCEEEC
T ss_pred EeE--CceeecCccccCC----cCe--eccchhccccC
Confidence 996 6666654 44444 477 88888888876
No 227
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=86.27 E-value=0.57 Score=55.01 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=54.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|... .-+.+.+.+ +=...
T Consensus 91 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A-~eA~~ 169 (254)
T 3hrx_A 91 EKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSA-EEALA 169 (254)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCH-HHHHH
Confidence 4699999999999999999999999999999864332 2334555555422 111111211 22346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+..|
T Consensus 170 ~GLv~~vv~~~-~l~~~a~~~ 189 (254)
T 3hrx_A 170 LGLVHRVVPAE-KLMEEALSL 189 (254)
T ss_dssp HTSCSEEECGG-GHHHHHHHH
T ss_pred CCCeEEecCcH-HHHHHHHHH
Confidence 89999999754 333444444
No 228
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=86.26 E-value=0.41 Score=57.10 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~~ 193 (278)
T 3h81_A 115 RTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAE-AER 193 (278)
T ss_dssp CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999864422 2233444455321 11112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+++|..
T Consensus 194 ~GLv~~vv~~~-~l~~~a~~~a~ 215 (278)
T 3h81_A 194 SGLVSRVVPAD-DLLTEARATAT 215 (278)
T ss_dssp HTSCSEEECGG-GHHHHHHHHHH
T ss_pred CCCccEEeChh-HHHHHHHHHHH
Confidence 89999999753 44455555543
No 229
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=86.26 E-value=7.3 Score=46.37 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=64.3
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--hh----c-------hHHHHHHHHHHHhcCCCCEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FE----G-------ILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~~----g-------ilk~ga~iv~al~~~~vP~i 2005 (2267)
...++++......++++.+.+ ..+ +|+|.-.+ .|+.|..-. .. . .......++.++..+.+|+|
T Consensus 47 ~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 125 (280)
T 2f6q_A 47 KNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLI 125 (280)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 367889999999999998865 567 88876543 255554211 00 0 11234566788999999999
Q ss_pred EEEccCCcCCchh-HhhhccccCCccceeecccccEEEee
Q 000092 2006 VYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
+.|- |-+.||+ .+++. .|+ ++|.++|+++.-
T Consensus 126 Aav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~p 157 (280)
T 2f6q_A 126 AVVN--GPAVGISVTLLGL----FDA--VYASDRATFHTP 157 (280)
T ss_dssp EEEC--SCEETHHHHGGGG----CSE--EEEETTCEEECC
T ss_pred EEEC--CeeehHHHHHHHh----CCE--EEECCCcEEECc
Confidence 9996 6666654 44444 477 888888888773
No 230
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=86.11 E-value=0.92 Score=54.13 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccccccccCCcccc----ccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy~s~~~lGG~~i----~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+-|-.+ ...
T Consensus 121 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~-~l~ltg~~~~A~eA~~ 199 (280)
T 2f6q_A 121 PKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT-EMLIFGKKLTAGEACA 199 (280)
T ss_dssp CSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH-HHHTTCCCEEHHHHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHH-HHHHcCCCCCHHHHHH
Confidence 4699999999999999999999999999998764432 223345555543210 011222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+++|..
T Consensus 200 ~GLv~~vv~~~-~l~~~a~~~a~ 221 (280)
T 2f6q_A 200 QGLVTEVFPDS-TFQKEVWTRLK 221 (280)
T ss_dssp TTSCSEEECTT-THHHHHHHHHH
T ss_pred CCCcceEECHH-HHHHHHHHHHH
Confidence 99999999754 34444555543
No 231
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=86.04 E-value=6.9 Score=46.87 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecC-CCCCCchhh-hh-h-----------chHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRD-LF-E-----------GILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~-~Gf~~G~~~-e~-~-----------gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.++......++++.+.....=+|+|.-. +.|+.|..- +. . ........++.++..+.+|+|+.
T Consensus 46 Nal~~~m~~~L~~al~~~~~d~~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 125 (291)
T 2fbm_A 46 NALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVS 125 (291)
T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5788999999999998886544456666654 347776531 11 0 11122345677888999999999
Q ss_pred EccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |.+.||++ +++. .|+ ++|.++|+++.
T Consensus 126 V~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 154 (291)
T 2fbm_A 126 VN--GPAIGLGASILPL----CDL--VWANEKAWFQT 154 (291)
T ss_dssp EC--SCEETHHHHTGGG----SSE--EEEETTCEEEC
T ss_pred EC--CeeecHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 96 66666544 3443 487 88999998876
No 232
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=85.91 E-value=16 Score=42.90 Aligned_cols=94 Identities=11% Similarity=0.178 Sum_probs=63.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchh--hhhhc-----hHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR--DLFEG-----ILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~--~e~~g-----ilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
-.++.+-.....++++.+.. ..+-+|+|.-.++ |+.|.. .+... .......+...+..+.+|+|+.|- |
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 104 (258)
T 4fzw_A 27 NALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVN--G 104 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEEC--S
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEc--C
Confidence 57889999999999988866 5677777765432 655532 11111 111245678889999999999996 6
Q ss_pred cCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-+.||+ -+++. .|+ .+|.++++++.
T Consensus 105 ~a~GgG~~lala----cD~--ria~~~a~f~~ 130 (258)
T 4fzw_A 105 YALGAGCELALL----CDV--VVAGENARFGL 130 (258)
T ss_dssp EEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred cceeeeeEeecc----cce--EEECCCCEEEC
Confidence 666654 44444 477 88888888876
No 233
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=85.68 E-value=0.52 Score=56.09 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=57.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|.... -+...+. ++-...
T Consensus 111 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~-A~eA~~ 189 (274)
T 4fzw_C 111 PKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLS-AEQAHE 189 (274)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEE-HHHHHH
T ss_pred CCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCC-HHHHHH
Confidence 4699999999999999999999999999999864432 23345555554321 1111111 122346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.+++++ +..+.+++|..-+
T Consensus 190 ~GLv~~vv~~~-~l~~~a~~~a~~l 213 (274)
T 4fzw_C 190 WGMIWQVVDDE-TLADTAQQLARHL 213 (274)
T ss_dssp TTSSSEEECGG-GHHHHHHHHHHHH
T ss_pred CCCceEEeChH-HHHHHHHHHHHHH
Confidence 99999999754 4444555554433
No 234
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=85.47 E-value=0.23 Score=47.96 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=32.1
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
......|+||..|+|.++++++|+.|..|++|+.|+
T Consensus 42 ~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~ 77 (80)
T 1pmr_A 42 DKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp SSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred cceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 334567999999999999999999999999999876
No 235
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=85.42 E-value=0.51 Score=56.24 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|... .-+.+.+.+. =...
T Consensus 109 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~-eA~~ 187 (275)
T 4eml_A 109 PKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQ-EAER 187 (275)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHH-HHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHH-HHHH
Confidence 4699999999999999999999999999999875542 2233444444322 0011112221 1346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+++|..
T Consensus 188 ~GLv~~vv~~~-~l~~~a~~~a~ 209 (275)
T 4eml_A 188 MGMVNTVVPVD-RLEEEGIQWAK 209 (275)
T ss_dssp HTSCSEEECGG-GHHHHHHHHHH
T ss_pred cCCccEeeCHH-HHHHHHHHHHH
Confidence 89999999754 44444444433
No 236
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A
Probab=85.37 E-value=5.5 Score=47.20 Aligned_cols=94 Identities=21% Similarity=0.169 Sum_probs=65.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-----------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-.. ....+....++.++..+.+|+|+.|
T Consensus 35 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (272)
T 3qk8_A 35 NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAI 114 (272)
T ss_dssp HEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57888999999999998865 467777776543 4777643110 1122334567888999999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |.+.|| ..+++. .|+ ++|.++|+++.
T Consensus 115 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 142 (272)
T 3qk8_A 115 R--GPAVGAGLVVALL----ADI--SVASATAKIID 142 (272)
T ss_dssp C--SEEEHHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred C--CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 7 666665 444444 477 88999998876
No 237
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=85.35 E-value=0.35 Score=57.71 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=54.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec-----chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT-----GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt-----Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |..-+-+.+|... .-+.+.+.+ +=..
T Consensus 113 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a-~eA~ 191 (279)
T 3g64_A 113 PFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRA-PEAE 191 (279)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHH
T ss_pred CCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCH-HHHH
Confidence 4699999999999999999999999999998764 343 2234455555322 111111222 1234
Q ss_pred ccCceEEEecCcHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.-|++|.+++++ +..+.+++|
T Consensus 192 ~~GLv~~vv~~~-~l~~~a~~~ 212 (279)
T 3g64_A 192 RIGLISELTEEG-RADEAARTL 212 (279)
T ss_dssp HHTCCSEECCTT-CHHHHHHHH
T ss_pred HCCCCCEecCch-HHHHHHHHH
Confidence 689999999753 334444444
No 238
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=85.20 E-value=5.2 Score=47.17 Aligned_cols=95 Identities=21% Similarity=0.137 Sum_probs=65.4
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCC-CCchhh-hh------------hchHHHHHHHHHHHhcCCCCE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGF-SGGQRD-LF------------EGILQAGSTIVENLRTYKQPV 2004 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf-~~G~~~-e~------------~gilk~ga~iv~al~~~~vP~ 2004 (2267)
...++++......++++.+.+ ..+-+|+|.-. +.| +.|..- +. ....+....++..+..+..|+
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 104 (263)
T 3lke_A 25 KNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVT 104 (263)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 368889999999999998865 45666666543 346 655421 10 112234556788899999999
Q ss_pred EEEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2005 FVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2005 i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+.|- |-+.||+ .+++. .|+ ++|.+++++|.
T Consensus 105 IAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 136 (263)
T 3lke_A 105 VALIN--GYAYGGGFNMMLA----CDR--RIALRRAKFLE 136 (263)
T ss_dssp EEEEC--SEEETHHHHGGGG----SSE--EEEETTCEEEC
T ss_pred EEEEC--CEeeHHHHHHHHH----CCE--EEEcCCCEEeC
Confidence 99996 6666654 44444 477 88999998875
No 239
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=85.10 E-value=0.49 Score=56.43 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=32.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII 1776 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ 1776 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.
T Consensus 117 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~ 151 (279)
T 3t3w_A 117 PKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFS 151 (279)
T ss_dssp SSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEE
T ss_pred CCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEe
Confidence 47999999999999999999999999999997643
No 240
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=85.03 E-value=14 Score=43.42 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh----hh--chHHHHHH-HHHHH-h--cCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL----FE--GILQAGST-IVENL-R--TYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e----~~--gilk~ga~-iv~al-~--~~~vP~i~vI~ 2009 (2267)
..+..+......++++.+.. ..+-+|+|.-.+ .|+.|..-. .. ...+.... ++.++ . .+..|+|+.|-
T Consensus 31 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~ 110 (265)
T 3rsi_A 31 NALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVN 110 (265)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHHHHHHHTTSSCCCSSCEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEEC
Confidence 67889999999999998865 457777775543 477664311 00 00011123 77778 8 89999999997
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|.++++++.
T Consensus 111 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 137 (265)
T 3rsi_A 111 --GACLGGGCEMLQQ----TDI--RVSDEHATFGL 137 (265)
T ss_dssp --SCEETHHHHHHTT----CSE--EEEETTCEEEC
T ss_pred --CeeeHHHHHHHHH----CCE--EEecCCCEEEC
Confidence 6666654 44444 477 88999988875
No 241
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=84.95 E-value=27 Score=41.17 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--------------hchHHHHHHHHHHHhcCCCCEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------EGILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------~gilk~ga~iv~al~~~~vP~i 2005 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-.. ....+....++.++..+.+|+|
T Consensus 25 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (269)
T 1nzy_A 25 NALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVL 104 (269)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57889999999999998866 467777776543 3665542110 0112234567788899999999
Q ss_pred EEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |-+.|| ..+++. .|+ ++|.++++++.
T Consensus 105 Aav~--G~a~GgG~~lal~----cD~--ria~~~a~f~~ 135 (269)
T 1nzy_A 105 AAIN--GVAAGGGLGISLA----SDM--AICADSAKFVC 135 (269)
T ss_dssp EEEC--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEEC--CeeecHHHHHHHh----CCE--EEecCCCEEeC
Confidence 9996 666665 444544 477 88888888876
No 242
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=84.93 E-value=0.5 Score=55.95 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+. =...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~-eA~~ 180 (265)
T 3kqf_A 102 PQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQ-EAKE 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHH-HHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHH
Confidence 4699999999999999999999999999999865432 2233444455321 0111112222 2346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+++|..
T Consensus 181 ~GLv~~vv~~-~~l~~~a~~~a~ 202 (265)
T 3kqf_A 181 YGLVEFVVPV-HLLEEKAIEIAE 202 (265)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHH
T ss_pred CCCccEEeCH-HHHHHHHHHHHH
Confidence 8999999974 444455555543
No 243
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=84.91 E-value=0.48 Score=56.43 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=50.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+ +=...
T Consensus 115 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a-~eA~~ 193 (278)
T 4f47_A 115 KKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITA-AEAKE 193 (278)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH-HHHHH
Confidence 4799999999999999999999999999999865432 2233444444322 001111221 22346
Q ss_pred cCceEEEecCc
Q 000092 1807 NGVVHLTVSDD 1817 (2267)
Q Consensus 1807 nGv~d~~v~dd 1817 (2267)
-|++|.+++++
T Consensus 194 ~GLv~~vv~~~ 204 (278)
T 4f47_A 194 MGLVGHVVPDG 204 (278)
T ss_dssp TTSCSEEECTT
T ss_pred CCCceEeeChh
Confidence 89999999764
No 244
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=84.89 E-value=0.85 Score=53.91 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=51.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccccccccCCcccc----ccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy~s~~~lGG~~i----~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+-|-.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~-~l~ltg~~~~a~eA~~ 180 (265)
T 3swx_A 102 SKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAM-RWMLTADTFDAVEAHR 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHH-HHHTTCCCEEHHHHHH
T ss_pred CCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHH-HHHHcCCcCCHHHHHH
Confidence 4699999999999999999999999999999875432 122345555532200 011222222 346
Q ss_pred cCceEEEecCc
Q 000092 1807 NGVVHLTVSDD 1817 (2267)
Q Consensus 1807 nGv~d~~v~dd 1817 (2267)
-|++|.+++++
T Consensus 181 ~GLv~~vv~~~ 191 (265)
T 3swx_A 181 IGIVQEIVPVG 191 (265)
T ss_dssp TTSCSEEESTT
T ss_pred cCCCCEecChh
Confidence 89999999764
No 245
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=84.82 E-value=0.51 Score=55.54 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=53.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +=...
T Consensus 92 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a-~eA~~ 170 (255)
T 3p5m_A 92 PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISA-ATAFE 170 (255)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCH-HHHHH
Confidence 4699999999999999999999999999999875442 1222333344321 001111222 22347
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 171 ~GLv~~vv~~~-~l~~~a~~~ 190 (255)
T 3p5m_A 171 WGMISHITSAD-EYESVLTDV 190 (255)
T ss_dssp TTSCSEECCTT-CHHHHHHHH
T ss_pred CCCCCEeeCHH-HHHHHHHHH
Confidence 99999999754 333444444
No 246
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=84.78 E-value=0.59 Score=47.11 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=38.4
Q ss_pred ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 722 KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 722 KM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
.-...|.||.+|+|..+ +++|+.|++||+|++|+..+.. ..-..||.|.+
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~-~~i~AP~~G~V 62 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKME-HTIKSPKDGTV 62 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSE-EEEECSSCEEE
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcccee-EEEECCCCeEE
Confidence 34567899999999888 9999999999999999875532 12234666654
No 247
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=84.64 E-value=21 Score=41.74 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=64.3
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-h------hchHH-HHHHHHHHHhcCCCCEEEEEcc
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------EGILQ-AGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~------~gilk-~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
...+.++......++++.+.+ ..+-+|+|.-. +.|+.|..-. . ....+ ....++.++..+.+|+|+.|-
T Consensus 24 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 102 (257)
T 2ej5_A 24 LNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVN- 102 (257)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEEC-
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 367889999999999988865 46677777653 3466654311 0 01111 245677889999999999996
Q ss_pred CCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.|| ..+++. .|+ ++|.+++++|.
T Consensus 103 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 129 (257)
T 2ej5_A 103 -GAAAGAGMSLALA----CDF--RLLSEKASFAP 129 (257)
T ss_dssp -SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred -ccccchhHHHHHh----CCE--EEEcCCCEEeC
Confidence 666664 444554 477 88888888876
No 248
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=84.62 E-value=0.55 Score=56.36 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=54.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|.... -+...+.+ +=...
T Consensus 123 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A-~eA~~ 201 (289)
T 3t89_A 123 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDA-KQALD 201 (289)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccH-HHHHH
Confidence 4699999999999999999999999999999876553 22233344443210 01111111 12346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+++|.
T Consensus 202 ~GLV~~vv~~~-~l~~~a~~~A 222 (289)
T 3t89_A 202 MGLVNTVVPLA-DLEKETVRWC 222 (289)
T ss_dssp HTSSSEEECGG-GHHHHHHHHH
T ss_pred CCCceEeeCHH-HHHHHHHHHH
Confidence 89999999744 3444444443
No 249
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=84.59 E-value=0.63 Score=55.82 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=55.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC-Ccceec-----------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.++ +.+.+. |..-+-+.+|... .-+...+.+. =..
T Consensus 103 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~-eA~ 181 (289)
T 3h0u_A 103 PAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDAD-LAE 181 (289)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHH-HHH
T ss_pred CCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHH
Confidence 4699999999999999999999999999998 764432 2234445555322 0111112222 234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.++++ .+..+.++++..
T Consensus 182 ~~GLV~~vv~~-~~l~~~a~~lA~ 204 (289)
T 3h0u_A 182 RYGWVNRAVPD-AELDEFVAGIAA 204 (289)
T ss_dssp HHTSSSEEECH-HHHHHHHHHHHH
T ss_pred HCCCccEecCH-HHHHHHHHHHHH
Confidence 68999999974 445555555543
No 250
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=84.52 E-value=0.44 Score=52.50 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
-+.|+=.+.+|++||+|++||+|+++.-
T Consensus 90 ~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 90 SLKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred hcCCCccEEEEeCCCEEcCCCEEEEECH
Confidence 3455556669999999999999999873
No 251
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=84.48 E-value=8 Score=46.30 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-C-CCCc-hhhhhh-----------chHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-G-FSGG-QRDLFE-----------GILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-G-f~~G-~~~e~~-----------gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.++......++++.+.. ..+=+|+|.-.+ . |++| .-.+.. ...+....++..+..+.+|+|+
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 108 (289)
T 3h0u_A 29 NLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIA 108 (289)
T ss_dssp CCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57889999999999999876 456677776543 3 4555 211111 1122345678889999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccc-cEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRT-AKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~-A~~gv 2043 (2267)
.|- |.+.||+ .+++. .|+ ++|.++ ++++.
T Consensus 109 aV~--G~a~GgG~~Lala----cD~--ria~~~~a~f~~ 139 (289)
T 3h0u_A 109 KLR--GRARGAGSEFLLA----CDM--RFASRENAILGQ 139 (289)
T ss_dssp EEC--SEEETHHHHHHHH----SSE--EEEETTTCEEEC
T ss_pred EEC--CEeehhhHHHHHh----CCE--EEEeCCCcEEeC
Confidence 996 6666654 44544 477 888888 88876
No 252
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=84.48 E-value=0.57 Score=55.41 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=54.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+. =...
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~-eA~~ 178 (263)
T 3moy_A 100 RKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAE-EAER 178 (263)
T ss_dssp CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHH-HHHH
T ss_pred CCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHH
Confidence 4699999999999999999999999999999875532 2233444444321 0111112211 1346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 179 ~GLv~~vv~~~-~l~~~a~~~ 198 (263)
T 3moy_A 179 VGLVSRIVPAA-DLLDEALAV 198 (263)
T ss_dssp TTSCSEEECGG-GHHHHHHHH
T ss_pred CCCccEecCch-HHHHHHHHH
Confidence 99999999753 344444444
No 253
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=84.47 E-value=0.59 Score=56.30 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=53.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+ +=...
T Consensus 130 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A-~eA~~ 208 (298)
T 3qre_A 130 RKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLA-EEAAQ 208 (298)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEH-HHHHH
T ss_pred CCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCH-HHHHH
Confidence 4699999999999999999999999999999875552 2233444444322 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 209 ~GLV~~vv~~~-~l~~~a~~~ 228 (298)
T 3qre_A 209 LGLVKEVVTPE-QLMPRALEY 228 (298)
T ss_dssp TTSCSEEECGG-GHHHHHHHH
T ss_pred cCCCeEecCHH-HHHHHHHHH
Confidence 89999999754 333333333
No 254
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}
Probab=84.45 E-value=0.66 Score=55.64 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=55.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEec-CCcceec-----------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRL-DQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~-~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+ ++.+.+. |..-|-+.+|... .-+...+.+ +=..
T Consensus 106 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A-~eA~ 184 (287)
T 3gkb_A 106 PQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDA-ETAA 184 (287)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCH-HHHH
Confidence 469999999999999999999999999999 7654432 2234455555322 111111211 1234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.++++ .+..+.+.++..
T Consensus 185 ~~GLV~~vv~~-~~l~~~a~~lA~ 207 (287)
T 3gkb_A 185 SYGWINRALPA-DELDEYVDRVAR 207 (287)
T ss_dssp HHTSSSEEECH-HHHHHHHHHHHH
T ss_pred HCCCCcEEeCh-hHHHHHHHHHHH
Confidence 68999999974 455555555543
No 255
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A
Probab=84.34 E-value=32 Score=41.37 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=57.8
Q ss_pred ccCHHHHHHHHHHHHHhcc------cCCcEEEEecCC-CCCCchhhh--h--------hchHHHHHH---HHHHH---hc
Q 000092 1943 VWFPDSATKTAQALMDFNR------EELPLFILANWR-GFSGGQRDL--F--------EGILQAGST---IVENL---RT 1999 (2267)
Q Consensus 1943 ~~~p~sa~K~arai~~a~~------~~lPLv~l~d~~-Gf~~G~~~e--~--------~gilk~ga~---iv~al---~~ 1999 (2267)
.+.++-.....++++.+.. ..+-+|+|.-.+ .|+.|..-. . .....+... .+..+ ..
T Consensus 59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (305)
T 3m6n_A 59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLG 138 (305)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788888888888887764 467778776543 377664211 0 011112222 23333 24
Q ss_pred CCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2000 YKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2000 ~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.+|+|+.|- |-+.|| ..+++. .|+ ++|.++|+++.
T Consensus 139 ~~kPvIAaV~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 175 (305)
T 3m6n_A 139 ARAHSIALVQ--GNALGGGFEAALS----CHT--IIAEEGVMMGL 175 (305)
T ss_dssp TTCEEEEEEC--SCEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred CCCCEEEEEC--CEeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 6899999996 666664 444554 377 88888888876
No 256
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=84.13 E-value=0.95 Score=51.75 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=48.5
Q ss_pred ceEEEEEcCcccchhhhhhccCCe--EEEecCCcceecchHH--------------------------HHHhhccccccc
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGFSA--------------------------LNKLLGREVYSS 1794 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~--~I~~~~a~i~ltGp~a--------------------------l~~~lG~evy~s 1794 (2267)
.|+++++.|.+.++|+|++.-||. ++|.+++.+++..|.. +.+.+|+..-.-
T Consensus 86 ~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i 165 (208)
T 2cby_A 86 CDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERI 165 (208)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 488999999999999999999998 8999999887765531 122223221000
Q ss_pred cccCCccccc-----cccCceEEEecCcHHHHHHHHHH
Q 000092 1795 HMQLGGPKIM-----ATNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1795 ~~~lGG~~i~-----~~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
...+..-.++ .+.|++|.+..+..+.+++++..
T Consensus 166 ~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~~~ 203 (208)
T 2cby_A 166 EADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQLEH 203 (208)
T ss_dssp HHHHHTTCEEEHHHHHHHTSCSEECSCC----------
T ss_pred HHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHHHHh
Confidence 0112222232 25799999988888877776654
No 257
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=83.79 E-value=0.59 Score=57.26 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEe-cCCcceec-----------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~-~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-|-+.+|... .-+...+. ++=..
T Consensus 167 ~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~-A~eA~ 245 (334)
T 3t8b_A 167 PKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYT-AEQMH 245 (334)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEE-HHHHH
T ss_pred CCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCC-HHHHH
Confidence 47999999999999999999999999999 88765432 2334444444322 11111111 12234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|+++.++++ .+..+.+++|..
T Consensus 246 ~~GLV~~vv~~-~~l~~~a~~~A~ 268 (334)
T 3t8b_A 246 QMGAVNAVAEH-AELETVGLQWAA 268 (334)
T ss_dssp HHTSCSEEECG-GGHHHHHHHHHH
T ss_pred HCCCCcEecCH-HHHHHHHHHHHH
Confidence 68999999975 344444555433
No 258
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=83.66 E-value=5.2 Score=47.04 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-hh--------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LF--------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e~--------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.-.. .|+.|..- +. ....+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (260)
T 1sg4_A 26 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 105 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 47888899999999988865 457777777652 37766431 11 11123345677889999999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecc--cccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYAD--RTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~--p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|. ++++++.
T Consensus 106 --G~a~GgG~~lala----cD~--~ia~~~~~a~f~~ 134 (260)
T 1sg4_A 106 --GACPAGGCLVALT----CDY--RILADNPRYCIGL 134 (260)
T ss_dssp --EEBCHHHHHHHTT----SSE--EEEECCTTCCBSC
T ss_pred --CeeehHHHHHHHh----CCE--EEEecCCCCEEeC
Confidence 6666654 44444 476 7777 7777654
No 259
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=83.56 E-value=5.5 Score=47.34 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=66.3
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecC-CCCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~-~Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.++ ..+-+|+|.-. +.|+.|..-. .....+....++..+..+.+|+|+.|-
T Consensus 38 Nal~~~~~~~L~~al~~~d-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 114 (275)
T 3hin_A 38 NALNDGLMAALKDCLTDIP-DQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALK-- 114 (275)
T ss_dssp TCBCHHHHHHHHHHTSSCC-TTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHhC-cCceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 6889999999999999885 57777777544 3476664211 111234456778889999999999997
Q ss_pred CcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2012 AELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2012 g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|-+.||+ .+++. .|+ ++|.++++++.-+
T Consensus 115 G~a~GgG~~lala----cD~--ria~~~a~f~~pe 143 (275)
T 3hin_A 115 GAVIGGGLELACA----AHI--RVAEASAYYALPE 143 (275)
T ss_dssp SEEETHHHHHHHH----SSE--EEEETTCEEECGG
T ss_pred CeeehHHHHHHHh----CCE--EEEcCCCEEECch
Confidence 6666654 44444 477 8888888887643
No 260
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=83.51 E-value=5.5 Score=48.61 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=65.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--h---------------------------------
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--E--------------------------------- 1984 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--~--------------------------------- 1984 (2267)
..+..+......++++.++. ..+-+|+|.-.+ .|+.|..-.. .
T Consensus 57 NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (333)
T 3njd_A 57 NAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDP 136 (333)
T ss_dssp TCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCTTSTTCHHHHHHTTCSSSCCCH
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccccccccccccccccccccccccccccch
Confidence 57888999999999998875 567777775543 4666642100 0
Q ss_pred ----chHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEeeCc
Q 000092 1985 ----GILQAGSTIVENLRTYKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 1985 ----gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
........++.++..+.+|+|+.|- |-+.|| ..+++. +|+ ++|.+++++|.-+.
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~--G~a~GgG~~Lala----cD~--rias~~a~f~~pe~ 195 (333)
T 3njd_A 137 MVDYQMMSRFVRGFASLMHCDKPTVVKIH--GYCVAGGTDIALH----ADQ--VIAAADAKIGYPPM 195 (333)
T ss_dssp HHHHHHHHHHHHHHTHHHHSSSCEEEEEC--SEEETHHHHHHTT----SSE--EEECTTCEEECGGG
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEC--CEEeHHHHHHHHh----CCE--EEECCCCeeechhh
Confidence 1122234456778889999999996 666664 444444 487 89999999887543
No 261
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.45 E-value=0.45 Score=48.05 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=32.0
Q ss_pred CCceecCCCceeEEEEccCCCEE-cCCCcEEEEEcc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHI-DADTPYAEVEVM 721 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V-~~G~~l~~iEaM 721 (2267)
...|+||..|+|.++++++|+.| ..|++|+.|+.-
T Consensus 50 ~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 50 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp EEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred eeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 46799999999999999999998 999999999853
No 262
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=83.41 E-value=1.2 Score=48.89 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=31.7
Q ss_pred EccCCCEEcCCCcEEEEEcc-------ccceeeecCCCcEEEEe-eCCCCccCCCC-EEEEEe
Q 000092 702 LVSDGSHIDADTPYAEVEVM-------KMCMPLLSPASGVLQFK-MAEGQAMQAGE-LIARLD 755 (2267)
Q Consensus 702 ~V~~Gd~V~~G~~l~~iEaM-------KM~~~l~ap~~G~v~~i-~~~G~~v~~G~-~La~l~ 755 (2267)
+|++||+|++||+|+++.-- .+..++.-.-......+ ...| .+..|+ .|..+.
T Consensus 99 ~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn~~~~~~~~~~~~-~v~~~~~~~~~~~ 160 (161)
T 1f3z_A 99 IAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTVGETPVIRIK 160 (161)
T ss_dssp CSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEESCGGGCSEEEECCS-EECTTTSEEEEEE
T ss_pred EEeCcCEECCCCEEEEECHHHHHhcCCCCeEEEEEECCcccceEEeccc-eEeeCCcEEEEEE
Confidence 99999999999999998732 23344443332222222 2234 465554 677653
No 263
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=83.40 E-value=0.9 Score=53.80 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=50.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~e-A~~ 177 (266)
T 3fdu_A 99 SKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAET-ALQ 177 (266)
T ss_dssp CSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHH-HHH
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999864432 2233445555432 11112222222 346
Q ss_pred cCceEEEec
Q 000092 1807 NGVVHLTVS 1815 (2267)
Q Consensus 1807 nGv~d~~v~ 1815 (2267)
-|++|.+++
T Consensus 178 ~GLv~~vv~ 186 (266)
T 3fdu_A 178 AGLVNEIVE 186 (266)
T ss_dssp TTSCSEECS
T ss_pred CCCHHHHHH
Confidence 899999997
No 264
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=83.31 E-value=0.28 Score=47.28 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 4579999999999999999999999999999874
No 265
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=83.04 E-value=0.67 Score=55.31 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=58.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 193 (277)
T 4di1_A 115 PKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEE-ALA 193 (277)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999999865432 1233444444321 01111122221 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.++++ .+..+.+++|..-+
T Consensus 194 ~GLV~~vv~~-~~l~~~a~~~a~~l 217 (277)
T 4di1_A 194 LGLIDDMVAP-DDVYDSAVAWARRY 217 (277)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHHTT
T ss_pred CCCccEEeCh-hHHHHHHHHHHHHH
Confidence 8999999974 45666777776654
No 266
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=82.83 E-value=0.8 Score=55.67 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=40.4
Q ss_pred EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|+.|+.-..=.....|++- -+..|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 9 ~~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 9 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ----CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 344555544444455666665 4678999999999999 9999999999999999543
No 267
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=82.82 E-value=16 Score=43.42 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhh--hhhc-----hH-HHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD--LFEG-----IL-QAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~--e~~g-----il-k~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.++. ..+-+|+|.-.++ |+.|..- +... .. ..... +..+..+.+|+|+.|-
T Consensus 47 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~-~~~l~~~~kPvIAav~-- 123 (278)
T 3h81_A 47 NALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFAT-WGKLAAVRTPTIAAVA-- 123 (278)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGG-GHHHHTCCSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHH-HHHHHhCCCCEEEEEC--
Confidence 68899999999999998865 4677787765432 7666431 1100 00 01111 5678889999999996
Q ss_pred CcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.|| ..+++. .|+ ++|.++++++.
T Consensus 124 G~a~GgG~~Lala----cD~--ria~~~a~f~~ 150 (278)
T 3h81_A 124 GYALGGGCELAMM----CDV--LIAADTAKFGQ 150 (278)
T ss_dssp BEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred CeeehHHHHHHHH----CCE--EEEcCCCEEEC
Confidence 666665 444554 477 88888888875
No 268
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=82.78 E-value=17 Score=42.58 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=62.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hhh------chHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE------GILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~~------gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.+.+ .++-+|+|.-.+ .|+.|..- +.. ...+.. .++..+..+..|+|+.|-
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~l~~~~kPvIAav~-- 103 (258)
T 2pbp_A 27 NALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQF-ADWDRLSIVKTPMIAAVN-- 103 (258)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTT-HHHHHHHTCCSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHH-HHHHHHHhCCCCEEEEEc--
Confidence 57889999999999998865 466677776532 25555421 100 000112 567788999999999996
Q ss_pred CcCCchh-HhhhccccCCccceeecccccEEEee
Q 000092 2012 AELRGGA-WVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2012 g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|-+.||+ .+++. .|+ ++|.+++++|.-
T Consensus 104 G~a~GgG~~lala----cD~--~ia~~~a~f~~p 131 (258)
T 2pbp_A 104 GLALGGGFELALS----CDL--IVASSAAEFGFP 131 (258)
T ss_dssp SEEETHHHHHHHT----SSE--EEEETTCEEECG
T ss_pred CEEEhHHHHHHHh----CCE--EEEcCCCEEECc
Confidence 6666654 44544 477 888899888763
No 269
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=82.74 E-value=0.58 Score=52.61 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=39.8
Q ss_pred ccCCCEEcCCCcEEEEEccccceeeecCCCcEEEE-----------------------------eeCCCCccCCCCEEE
Q 000092 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQF-----------------------------KMAEGQAMQAGELIA 752 (2267)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~-----------------------------i~~~G~~v~~G~~La 752 (2267)
|++|+.|++||+|+ =...+.|..+|+|.+ +|++|+.|++|+.|.
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence 79999999999999 467889999999975 789999999999987
No 270
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=82.65 E-value=5.8 Score=46.63 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=60.0
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG- 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG- 2017 (2267)
...+.++......++++.+.. ..+=+|+|.-. +.|+.|..-..-........+...+..+..|+|+.|- |-+.||
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~--G~a~GgG 107 (256)
T 3pe8_A 30 RNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAIN--GAAVTGG 107 (256)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEEC--SEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEEC--CeeechH
Confidence 368889999999999998865 45666666543 4477765321110001112233456678899999997 666664
Q ss_pred hHhhhccccCCccceeecccccEEEe
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
..+++. .|+ ++|.++++++.
T Consensus 108 ~~lala----cD~--~ia~~~a~f~~ 127 (256)
T 3pe8_A 108 LELALY----CDI--LIASENAKFAD 127 (256)
T ss_dssp HHHHHH----SSE--EEEETTCEEEC
T ss_pred HHHHHh----CCE--EEEcCCCEEEC
Confidence 444554 477 88899988875
No 271
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=82.60 E-value=0.6 Score=49.51 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCceecCCCceeEEEEccCCC-EEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd-~V~~G~~l~~iEa 720 (2267)
...|.||..|+|.+++|++|| .|+.||+|++|+.
T Consensus 70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 457999999999999999998 8999999999985
No 272
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=82.53 E-value=7.8 Score=45.81 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=66.5
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhh-hh----------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD-LF----------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~-e~----------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.++...+-+|+|.-.+ .|+.|..- +. .........++..+..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 108 (267)
T 3hp0_A 29 NTINDTLIEECLQVLNQCETSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVR 108 (267)
T ss_dssp TCBCSHHHHHHHHHHHHHHHSSCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 57888999999999998876567778886543 37666421 10 11234456788889999999999997
Q ss_pred cCCcCCc-hhHhhhccccCCccceeecccccEEEee
Q 000092 2010 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2010 ~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|.+.| |.-+++. .|+ ++|.++|+++.-
T Consensus 109 --G~a~GgG~~lala----cD~--ria~~~a~f~~p 136 (267)
T 3hp0_A 109 --GKVNAGGLGFVSA----TDI--AIADQTASFSLS 136 (267)
T ss_dssp --SEEETTHHHHHHH----SSE--EEECTTCEEECC
T ss_pred --CEEeehHHHHHHh----CCE--EEEcCCCEEECc
Confidence 66665 4444554 477 888888888763
No 273
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=82.52 E-value=12 Score=44.39 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-h-----chHH---HHHHHHHHHh---cCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-E-----GILQ---AGSTIVENLR---TYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-~-----gilk---~ga~iv~al~---~~~vP~i~v 2007 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-.. . .... ....++..+. .+.+|+|+.
T Consensus 42 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAa 121 (278)
T 4f47_A 42 NALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAA 121 (278)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC----------------------CTTCBTTTTBSCCCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 58889999999999998865 567777775543 4776643111 0 0000 1112334455 788999999
Q ss_pred EccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+ .+++. .|+ ++|.++++++.
T Consensus 122 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 150 (278)
T 4f47_A 122 VE--GPAIAGGTEILQG----TDI--RVAAESAKFGI 150 (278)
T ss_dssp EC--SEEETHHHHHHTT----CSE--EEEETTCEEEC
T ss_pred EC--CEEehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 96 6666654 44444 477 88888888875
No 274
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=82.50 E-value=0.53 Score=48.40 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCceecCCCceeEEEEccCCC-EEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd-~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.+++|++|+ .|..|++|++|+.
T Consensus 50 ~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~ 84 (108)
T 2dne_A 50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp EEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence 457999999999999999999 8999999999984
No 275
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=82.21 E-value=2.1 Score=42.83 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCC-Chhhh-hccEEEEccCCCCCCCccCHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRIN-AEHIR-IADQFVEVPGGTNNNNYANVQL 122 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG-~~v~~~~~~i~~v~~~t~~D~~~~-a~~vr-~ADe~v~vp~~~~~~~Y~dvd~ 122 (2267)
.++++|+|+|.|.++..+++.+.+.| ++++ ++ |.+.. ..... .--..+.. ++.+.+.
T Consensus 3 ~~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~-----------~~--~r~~~~~~~~~~~~~~~~~~-------d~~~~~~ 62 (118)
T 3ic5_A 3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVT-----------VA--DHDLAALAVLNRMGVATKQV-------DAKDEAG 62 (118)
T ss_dssp TTCEEEEEECCSHHHHHHHHHHHHCSSEEEE-----------EE--ESCHHHHHHHHTTTCEEEEC-------CTTCHHH
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCceEE-----------EE--eCCHHHHHHHHhCCCcEEEe-------cCCCHHH
Confidence 35689999999999999999999998 6654 23 21111 11111 11123322 3445566
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEe
Q 000092 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL 160 (2267)
Q Consensus 123 Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fi 160 (2267)
+.++.+ ++|.|+-..+.... ..+.+.+.+.|+.++
T Consensus 63 ~~~~~~--~~d~vi~~~~~~~~-~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 63 LAKALG--GFDAVISAAPFFLT-PIIAKAAKAAGAHYF 97 (118)
T ss_dssp HHHHTT--TCSEEEECSCGGGH-HHHHHHHHHTTCEEE
T ss_pred HHHHHc--CCCEEEECCCchhh-HHHHHHHHHhCCCEE
Confidence 666553 68998866543221 234455556666654
No 276
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=82.15 E-value=1.2 Score=52.51 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=54.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-c----------c-hHHHHHhhccccc----cccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-T----------G-FSALNKLLGREVY----SSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-t----------G-p~al~~~lG~evy----~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+| |..++..||++|+.+++.+.+ . | ..-+-+.+|.... -+...+.+.+ ..
T Consensus 108 ~kPvIAav~G~a~G-G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~e-A~ 185 (257)
T 1szo_A 108 EVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDART-AL 185 (257)
T ss_dssp CSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHH-HH
T ss_pred CCcEEEEECCchHH-HHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HH
Confidence 46999999999995 899999999999999987666 1 2 1234555554321 1111122222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.+++ +.+....+.+|..
T Consensus 186 ~~GLv~~vv~-~~~l~~~a~~~a~ 208 (257)
T 1szo_A 186 DYGAVNEVLS-EQELLPRAWELAR 208 (257)
T ss_dssp HHTSCSEEEC-HHHHHHHHHHHHH
T ss_pred HCCCceEEeC-hHHHHHHHHHHHH
Confidence 6899999996 4444455555443
No 277
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=82.14 E-value=22 Score=41.77 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=63.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhh-hh-h-----chHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD-LF-E-----GILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~-e~-~-----gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..+.++......++++.++. ..+-+|+|.-.++ |+.|..- +. . ...+....++.++..+.+|+|+.|- |
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 109 (263)
T 3moy_A 32 NALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVA--G 109 (263)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEEC--B
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEEC--C
Confidence 57889999999999998865 4677777766432 6665421 10 0 0011233467788999999999996 6
Q ss_pred cCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-+.||+ .+++. .|+ ++|.++++++.
T Consensus 110 ~a~GgG~~lala----cD~--~ia~~~a~f~~ 135 (263)
T 3moy_A 110 YALGGGCELAML----CDL--VIAADTARFGQ 135 (263)
T ss_dssp EEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EeehHHHHHHHH----CCE--EEecCCCEEeC
Confidence 666654 44444 477 88888888875
No 278
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=81.77 E-value=2.2 Score=45.89 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=66.8
Q ss_pred cEEEEECc----hHHHHHHHHHHHHcCCcccccccce--eEE-EEEeccCCCCCChhhhhccEEE-EccCCCCCCCccCH
Q 000092 49 HSILIANN----GMAAVKFIRSIRTWAYETFGTEKAI--LLV-AMATPEDMRINAEHIRIADQFV-EVPGGTNNNNYANV 120 (2267)
Q Consensus 49 kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~i--~~v-~~~t~~D~~~~a~~vr~ADe~v-~vp~~~~~~~Y~dv 120 (2267)
++|.|+|. |-.+..+++.+++.||+++..+... +.+ .+-++.+...- ..-+|-.+ .+|. ..+
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el---~~~~Dlvii~vp~-------~~v 83 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADV---PEKVDMVDVFRNS-------EAA 83 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTC---SSCCSEEECCSCS-------THH
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHc---CCCCCEEEEEeCH-------HHH
Confidence 57999998 6789999999999999877433332 221 12222222110 11234433 3332 235
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 121 QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
..+++-|.+.++.+||.-.|.. ..++.+.+++.|+.++||.---+
T Consensus 84 ~~v~~~~~~~g~~~i~i~~~~~--~~~l~~~a~~~Gi~~igpnc~g~ 128 (145)
T 2duw_A 84 WGVAQEAIAIGAKTLWLQLGVI--NEQAAVLAREAGLSVVMDRCPAI 128 (145)
T ss_dssp HHHHHHHHHHTCCEEECCTTCC--CHHHHHHHHTTTCEEECSCCHHH
T ss_pred HHHHHHHHHcCCCEEEEcCChH--HHHHHHHHHHcCCEEEcCCeeeE
Confidence 6666666678899998655433 45677888889999999875443
No 279
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}
Probab=81.74 E-value=6.8 Score=46.85 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=65.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-hhhc-------------hHHHHHHHHHHHhcCCCCE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LFEG-------------ILQAGSTIVENLRTYKQPV 2004 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e~~g-------------ilk~ga~iv~al~~~~vP~ 2004 (2267)
..+.++......++++.+.. ..+=+|+|.-.. .|+.|..- +... .......++.++..+.+|+
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 109 (287)
T 3gkb_A 30 NVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVT 109 (287)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57889999999999998875 467788886654 37766431 1110 0112345788899999999
Q ss_pred EEEEccCCcCCch-hHhhhccccCCccceeeccc-ccEEEe
Q 000092 2005 FVYIPMMAELRGG-AWVVVDSRINSDHIEMYADR-TAKGNV 2043 (2267)
Q Consensus 2005 i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p-~A~~gv 2043 (2267)
|+.|- |-+.|| ..+++. .|+ ++|.+ +|+++.
T Consensus 110 IAaV~--G~a~GgG~~lala----cD~--ria~~~~a~f~~ 142 (287)
T 3gkb_A 110 IVKLA--GKARGGGAEFVAA----ADM--AFAAAETAGLGQ 142 (287)
T ss_dssp EEEEC--SEEETHHHHHHHH----SSE--EEEETTTCEEEC
T ss_pred EEEEC--CeeehHHHHHHHH----CCE--EEEeCCCcEEEC
Confidence 99997 666664 444554 377 88888 888876
No 280
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=81.60 E-value=11 Score=44.50 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=60.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-hhc---------------hHHHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FEG---------------ILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~~g---------------ilk~ga~iv~al~~~~vP 2003 (2267)
..++++......++++.+.. ..+=+|+|.-.+ .|+.|..-. ... .+.....++..+..+.+|
T Consensus 33 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 112 (274)
T 3tlf_A 33 NALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKP 112 (274)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCSC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCCC
Confidence 68899999999999998865 456677776543 365554211 000 000112244556778899
Q ss_pred EEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2004 VFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+|+.|- |-+.|| ..+++. .|+ ++|.++++++.
T Consensus 113 vIAav~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 145 (274)
T 3tlf_A 113 VLTAVN--GICCGAGMDWVTT----TDI--VIASEQATFFD 145 (274)
T ss_dssp EEEEEC--SEEEGGGHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEEEEC--CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 999996 666664 444554 477 88889998876
No 281
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=81.46 E-value=7.8 Score=46.39 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=65.5
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh-hh---------c-hHHHHHHHHHHHhcCCCCEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL-FE---------G-ILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e-~~---------g-ilk~ga~iv~al~~~~vP~i~ 2006 (2267)
...++++......++++.+.. ..+=+|+|.-.+ .|+.|..-. .. . .......++..+..+.+|+|+
T Consensus 49 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 128 (289)
T 3t89_A 49 RNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVA 128 (289)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEE
Confidence 368899999999999998865 567788887654 366554211 00 0 011234677888999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+ .+++. .|+ ++|.+++++|.
T Consensus 129 aV~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 158 (289)
T 3t89_A 129 MVA--GYSIGGGHVLHMM----CDL--TIAADNAIFGQ 158 (289)
T ss_dssp EEC--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEC--CEeehHHHHHHHh----CCE--EEEeCCCEEec
Confidence 996 6666654 44444 477 89999999887
No 282
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=81.41 E-value=1.7 Score=46.71 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=71.9
Q ss_pred hHHHHHHhcCCCCCccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEE-E
Q 000092 34 EVDEFCRSLGGKKPIHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFV-E 107 (2267)
Q Consensus 34 ~~~~~~~~~~g~~~~kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~i~~v-~~~t~~D~~~~a~~vr~ADe~v-~ 107 (2267)
.++.+.+. -++|.|+|. |-.+.++++.+++.||+++..+..-+.+ .+-++.+...-. .-.|-.+ .
T Consensus 14 ~l~~ll~~------p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~---~~vDlvvi~ 84 (144)
T 2d59_A 14 DIREILTR------YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIP---DKIEVVDLF 84 (144)
T ss_dssp HHHHHHHH------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCS---SCCSEEEEC
T ss_pred HHHHHHcC------CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcC---CCCCEEEEE
Confidence 45555521 368999998 5788899999999999876433322211 112222211100 1234433 3
Q ss_pred ccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 108 vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
+|. ..+..+++.|.+.++.++|--.|.. ..++.+.+.++|+.++||.---+
T Consensus 85 vp~-------~~~~~vv~~~~~~gi~~i~~~~g~~--~~~l~~~a~~~Gi~vvGpnc~gv 135 (144)
T 2d59_A 85 VKP-------KLTMEYVEQAIKKGAKVVWFQYNTY--NREASKKADEAGLIIVANRCMMR 135 (144)
T ss_dssp SCH-------HHHHHHHHHHHHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEESCCHHH
T ss_pred eCH-------HHHHHHHHHHHHcCCCEEEECCCch--HHHHHHHHHHcCCEEEcCCchhh
Confidence 332 2356677777788999999766653 45678888889999999865433
No 283
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=81.40 E-value=0.91 Score=53.56 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=37.0
Q ss_pred cCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 710 DADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 710 ~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..=.....|++- -...|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 9 ~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 9 ITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 333445566653 3567999999999999 9999999999999999643
No 284
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=81.26 E-value=9.6 Score=45.80 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-hh----------------chHHHHHHHHHHHhcCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FE----------------GILQAGSTIVENLRTYKQ 2002 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~~----------------gilk~ga~iv~al~~~~v 2002 (2267)
..+.++......++++.++. ..+-+|+|.-. +.|+.|..-. .. ........++..+..+.+
T Consensus 52 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 131 (298)
T 3qre_A 52 NAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRK 131 (298)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------------------CCTTGGGGSSS
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 68899999999999998876 45667777544 3366553211 00 001112234556778899
Q ss_pred CEEEEEccCCcCCc-hhHhhhccccCCccceeecccccEEEeeC
Q 000092 2003 PVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2003 P~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|+|+.|- |-+.| |..+++. .|+ ++|.++++++.-+
T Consensus 132 PvIAaV~--G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 167 (298)
T 3qre_A 132 PVIAAIN--GPCVGIGLTQALM----CDV--RFAAAGAKFAAVF 167 (298)
T ss_dssp CEEEEEC--SCEETHHHHHHHH----SSE--EEEETTCEEECCC
T ss_pred CEEEEEC--CceeecchHHHhh----CCE--EEEcCCCEEECcc
Confidence 9999997 66666 4444555 477 8999999988743
No 285
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=81.09 E-value=1.8 Score=46.21 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=69.0
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEE-EccCCCCCCCccCHH
Q 000092 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFV-EVPGGTNNNNYANVQ 121 (2267)
Q Consensus 48 ~kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~i~~v-~~~t~~D~~~~a~~vr~ADe~v-~vp~~~~~~~Y~dvd 121 (2267)
-++|.|+|. |-.+.++++.+++.||+++..+..-+.+ .+-++.+... ...-+|-.+ .+|. ..+.
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~e---l~~~vDlvii~vp~-------~~v~ 83 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRE---LPKDVDVIVFVVPP-------KVGL 83 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGG---SCTTCCEEEECSCH-------HHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHH---hCCCCCEEEEEeCH-------HHHH
Confidence 368999998 8899999999999999877444332222 1122222211 111245443 3331 2356
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 122 ~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
.+++-|.+.++.++|.-.+. +..++.+.+++.|+.++||.---+
T Consensus 84 ~v~~~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~igpnc~g~ 127 (138)
T 1y81_A 84 QVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGRCIMV 127 (138)
T ss_dssp HHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSCCHHH
T ss_pred HHHHHHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEcCCcceE
Confidence 66666667889999976554 345678888889999999865433
No 286
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=81.05 E-value=30 Score=40.88 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=65.5
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hhh--------c----------hHHHHHHHHHHHh
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE--------G----------ILQAGSTIVENLR 1998 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~~--------g----------ilk~ga~iv~al~ 1998 (2267)
...+.++......++++.+.+ ..+=+|+|.-.+ .|+.|..- +.. . ..+....++.++.
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (275)
T 1dci_A 25 RNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIE 104 (275)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 368889999999999998866 467777776543 47766431 110 0 0122345677888
Q ss_pred cCCCCEEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 1999 TYKQPVFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
.+.+|+|+.|- |.+.||+ .+++. .|+ ++|.++|+++.-+
T Consensus 105 ~~~kPvIAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe 144 (275)
T 1dci_A 105 KCPKPVIAAIH--GGCIGGGVDLISA----CDI--RYCTQDAFFQVKE 144 (275)
T ss_dssp HSSSCEEEEEC--SEEETHHHHHHTT----SSE--EEEETTCEEECCG
T ss_pred hCCCCEEEEEC--CeeeHHHHHHHHh----CCE--EEEeCCCEEeCcc
Confidence 99999999996 6666654 44444 477 8888888887643
No 287
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=79.91 E-value=0.97 Score=52.91 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch----------HHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF----------SALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp----------~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-+-+.+|... .-+...+.+.+ ...-
T Consensus 94 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~~ 172 (250)
T 2a7k_A 94 NKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPR-CVDY 172 (250)
T ss_dssp CSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHH-HHHH
T ss_pred CCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHHHHHHHhHHHHHHHHHHcCCcccHHH-HHHc
Confidence 469999999999999999999999999999976443210 13444444321 11112222222 3468
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
|++|.++++ .+....+.+|..-
T Consensus 173 GLv~~vv~~-~~l~~~a~~~a~~ 194 (250)
T 2a7k_A 173 RLVNQVVES-SALLDAAITQAHV 194 (250)
T ss_dssp TCCSEEECH-HHHHHHHHHHHHH
T ss_pred CCcceecCH-HHHHHHHHHHHHH
Confidence 999999964 4455555555443
No 288
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=79.67 E-value=6.4 Score=46.22 Aligned_cols=75 Identities=8% Similarity=-0.042 Sum_probs=50.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 105 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~e-A~~ 183 (258)
T 3lao_A 105 SKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADE-ALR 183 (258)
T ss_dssp CSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999999875442 2223444444321 11111222211 346
Q ss_pred cCceEEEecCc
Q 000092 1807 NGVVHLTVSDD 1817 (2267)
Q Consensus 1807 nGv~d~~v~dd 1817 (2267)
-|++|.+++++
T Consensus 184 ~Glv~~vv~~~ 194 (258)
T 3lao_A 184 MRLLTEVVEPG 194 (258)
T ss_dssp TTSCSEEECTT
T ss_pred cCCCcEeeChh
Confidence 89999999753
No 289
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=79.60 E-value=1.1 Score=52.79 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=53.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |...+-+.+|... .-+...+.+ +=...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a-~eA~~ 179 (261)
T 2gtr_A 101 KKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTA-QEACG 179 (261)
T ss_dssp CSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCH-HHHHH
Confidence 4699999999999999999999999999999765432 1223444455322 111112222 22346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+.+|
T Consensus 180 ~GLv~~vv~~~-~l~~~a~~~ 199 (261)
T 2gtr_A 180 KGLVSQVFWPG-TFTQEVMVR 199 (261)
T ss_dssp TTSCSEEECGG-GHHHHHHHH
T ss_pred CCCcccccChh-HHHHHHHHH
Confidence 89999998743 333444444
No 290
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=79.41 E-value=1.1 Score=52.65 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=32.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 94 ~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~ 129 (253)
T 1uiy_A 94 PKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGY 129 (253)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEEC
T ss_pred CCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeC
Confidence 469999999999999999999999999999987554
No 291
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=79.08 E-value=0.98 Score=53.11 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=32.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 94 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~ 129 (257)
T 2ej5_A 94 EKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAP 129 (257)
T ss_dssp CSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeC
Confidence 469999999999999999999999999999987544
No 292
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=78.73 E-value=9.2 Score=45.47 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=64.1
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h-h-----c-------hHHHHHHHHHHHhcCCCCE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F-E-----G-------ILQAGSTIVENLRTYKQPV 2004 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~-~-----g-------ilk~ga~iv~al~~~~vP~ 2004 (2267)
...++++......++++.+.+ ..+-+|+|.-.+ .|+.|..-. . . + ..+....++.++..+..|+
T Consensus 41 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 120 (279)
T 3t3w_A 41 ANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPS 120 (279)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 367889999999999998865 467777776554 476664210 0 0 0 0112234567788999999
Q ss_pred EEEEccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2005 FVYIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2005 i~vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+.|- |.+.||++ +++. .|+ ++|.++++++.
T Consensus 121 IAav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 152 (279)
T 3t3w_A 121 IAAVQ--GRCISGGLLLCWP----CDL--IIAAEDALFSD 152 (279)
T ss_dssp EEEEC--SEEEGGGHHHHTT----SSE--EEEETTCEEEC
T ss_pred EEEEC--CeEhHHHHHHHHh----CCE--EEecCCCEEeC
Confidence 99996 66666554 4444 477 88888888876
No 293
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=78.63 E-value=0.95 Score=55.40 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=46.8
Q ss_pred eEEEEccCCCEEcCCCcEEEEEcc-ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 698 LLRYLVSDGSHIDADTPYAEVEVM-KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 698 vv~~~V~~Gd~V~~G~~l~~iEaM-KM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
|.-..|+.|+....=.....|++. .-+..|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 30 v~~~~v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 30 LAVAPATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp CCEEECEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred eEEEEeeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 333455555555555666777775 56788999999999999 9999999999999999863
No 294
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3
Probab=78.52 E-value=1.1 Score=53.11 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=32.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~ 139 (264)
T 1wz8_A 104 PRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLD 139 (264)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeC
Confidence 469999999999999999999999999999987544
No 295
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=78.51 E-value=13 Score=43.74 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEec-CC--CCCCchhhh--h------hchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILAN-WR--GFSGGQRDL--F------EGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d-~~--Gf~~G~~~e--~------~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.++......++++.+.+..+-+|+|.- .+ .|+.|..-. . .........++..+..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 104 (261)
T 1ef8_A 26 NALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVE- 104 (261)
T ss_dssp TCCCHHHHHHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHhhCCceEEEEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 578899999999999998764477777766 33 355553210 0 01112345678889999999999996
Q ss_pred CCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ .+++. .|+ ++|.++++++.
T Consensus 105 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 131 (261)
T 1ef8_A 105 -GSVWGGAFEMIMS----SDL--IIAASTSTFSM 131 (261)
T ss_dssp -SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred -CEEEeHhHHHHHh----CCE--EEecCCCEEeC
Confidence 6666654 44444 477 88889988876
No 296
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=78.35 E-value=1.2 Score=52.24 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=54.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+. ++=...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~-a~eA~~ 177 (256)
T 3qmj_A 99 PKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWID-AEEALR 177 (256)
T ss_dssp CSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEE-HHHHHH
T ss_pred CCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCC-HHHHHH
Confidence 4699999999999999999999999999999764432 1223444444321 11111121 222346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.++++ .+..+.+++|.
T Consensus 178 ~GLv~~vv~~-~~l~~~a~~~a 198 (256)
T 3qmj_A 178 MGLVWRICSP-EELLPEARRHA 198 (256)
T ss_dssp HTSSSEEECG-GGHHHHHHHHH
T ss_pred CCCccEEeCH-hHHHHHHHHHH
Confidence 8999999974 34444444443
No 297
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=78.08 E-value=15 Score=43.30 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhh-hhh----------chHHHHHHHHHHHhcCCCCEEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-LFE----------GILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~-e~~----------gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
...+.++......++++.+.. ..+=+|+|.-. +.|+.|..- +.. ........++..+..+.+|+|+.
T Consensus 26 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 105 (266)
T 3fdu_A 26 KNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIA 105 (266)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 368889999999999998865 45667777543 347766421 100 12234557788899999999999
Q ss_pred EccCCcCCchhH-hhhccccCCccceeecccccEEEee
Q 000092 2008 IPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2008 I~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|- |-+.||++ +++. .|+ ++|.++++++.-
T Consensus 106 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~p 135 (266)
T 3fdu_A 106 VK--GVAIGIGVTILLQ----ADL--VFADNTALFQIP 135 (266)
T ss_dssp EC--SEEETHHHHGGGG----CSE--EEECTTCEEECC
T ss_pred EC--CEEehHHHHHHHh----CCE--EEEcCCCEEECc
Confidence 96 66666544 4444 477 888888888763
No 298
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=78.08 E-value=1.3 Score=53.11 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=32.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 119 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~ 154 (291)
T 2fbm_A 119 KKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 154 (291)
T ss_dssp CSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEEC
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEEC
Confidence 469999999999999999999999999999987544
No 299
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=78.05 E-value=2.8 Score=44.03 Aligned_cols=108 Identities=15% Similarity=0.007 Sum_probs=69.2
Q ss_pred ccEEEEECch----HHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEEE-ccCCCCCCCccCHH
Q 000092 48 IHSILIANNG----MAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFVE-VPGGTNNNNYANVQ 121 (2267)
Q Consensus 48 ~kkVLIan~G----~~Av~iIrsaR~lG~~v~~~~~~i~~v-~~~t~~D~~~~a~~vr~ADe~v~-vp~~~~~~~Y~dvd 121 (2267)
.++|.|+|.. -.+.++++.+++.||+++..+.....+ .+-++.+...-.. .|-++. +|. ..+.
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~----vDlavi~~p~-------~~v~ 72 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG----VDTVTLYINP-------QNQL 72 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT----CCEEEECSCH-------HHHG
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC----CCEEEEEeCH-------HHHH
Confidence 4789999964 478899999999999876433332222 1223333221111 344333 222 2355
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHH
Q 000092 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMA 168 (2267)
Q Consensus 122 ~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~ 168 (2267)
.+++-|.+.++.+||--.|+. +.++.+.++++|+.++|...-.+.
T Consensus 73 ~~v~e~~~~g~k~v~~~~G~~--~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 73 SEYNYILSLKPKRVIFNPGTE--NEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp GGHHHHHHHCCSEEEECTTCC--CHHHHHHHHHTTCEEEESCHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCC--hHHHHHHHHHcCCeEECCcCeEEe
Confidence 667777888999999887874 457889899999999975544443
No 300
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=77.93 E-value=1.2 Score=52.48 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=32.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~ 130 (258)
T 2pbp_A 95 KTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGF 130 (258)
T ss_dssp CSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEEC
T ss_pred CCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEEC
Confidence 479999999999999999999999999999986544
No 301
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=77.86 E-value=1.1 Score=52.72 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=33.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~ 132 (260)
T 1mj3_A 97 KKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQ 132 (260)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeC
Confidence 479999999999999999999999999999987554
No 302
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*
Probab=77.67 E-value=1.2 Score=51.70 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=53.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec-c---hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT-G---FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt-G---p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. + ..-+-+.+|... .-+...+.+.+ ...
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~e-A~~ 173 (233)
T 3r6h_A 95 PKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGET-ALA 173 (233)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHH-HHH
T ss_pred CCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 4699999999999999999999999999998764 342 1 112233344321 00111122221 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+++|..
T Consensus 174 ~Glv~~vv~~-~~l~~~a~~~a~ 195 (233)
T 3r6h_A 174 AGFIDEISLP-EVVLSRAEEAAR 195 (233)
T ss_dssp HTSCSEECCG-GGHHHHHHHHHH
T ss_pred cCCCcEeeCH-HHHHHHHHHHHH
Confidence 8999999975 444444445433
No 303
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=77.60 E-value=1.3 Score=52.15 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=53.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |...+-+.+|... .-+...+.+ +=...
T Consensus 91 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a-~eA~~ 169 (254)
T 3gow_A 91 EKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSA-EEALA 169 (254)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCH-HHHHH
Confidence 4699999999999999999999999999999864432 2233444444322 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 170 ~Glv~~vv~~~-~l~~~a~~~ 189 (254)
T 3gow_A 170 LGLVHRVVPAE-KLMEEALSL 189 (254)
T ss_dssp HTSCSEEECGG-GHHHHHHHH
T ss_pred cCCCCEecCHH-HHHHHHHHH
Confidence 89999999753 344444444
No 304
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=77.56 E-value=1.3 Score=52.75 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=32.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+
T Consensus 122 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~ 157 (276)
T 3rrv_A 122 RIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLAD 157 (276)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEEC
T ss_pred CCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEEC
Confidence 469999999999999999999999999999986543
No 305
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=77.54 E-value=1.4 Score=51.91 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=53.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +=...
T Consensus 93 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a-~eA~~ 171 (256)
T 3trr_A 93 RKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTA-EDAAK 171 (256)
T ss_dssp SSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEH-HHHGG
T ss_pred CCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCH-HHHHH
Confidence 5799999999999999999999999999999764322 1223444444322 001111121 22346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+++|.
T Consensus 172 ~GLv~~vv~~~-~l~~~a~~~a 192 (256)
T 3trr_A 172 YGFINRLVDDG-QALDTALELA 192 (256)
T ss_dssp GTCCSEEECTT-CHHHHHHHHH
T ss_pred CCCeeEecChH-HHHHHHHHHH
Confidence 89999999754 3344444443
No 306
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=77.48 E-value=1.2 Score=52.82 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=52.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 100 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 178 (269)
T 1nzy_A 100 KRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEE-AKD 178 (269)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHH-HHH
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999999875442 1122334444221 11112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.++++ .+..+.+.+|
T Consensus 179 ~GLv~~vv~~-~~l~~~a~~~ 198 (269)
T 1nzy_A 179 WGLVSRVYPK-DEFREVAWKV 198 (269)
T ss_dssp HTSCSCEECH-HHHHHHHHHH
T ss_pred CCCccEeeCH-HHHHHHHHHH
Confidence 7888888864 3444444444
No 307
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=77.45 E-value=1.3 Score=52.21 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=53.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+. ++=...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~-a~eA~~ 180 (265)
T 3rsi_A 102 TKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLT-AFEAYH 180 (265)
T ss_dssp SSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEE-HHHHHH
T ss_pred CCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCC-HHHHHH
Confidence 4699999999999999999999999999999875432 1223444444321 00111111 122346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~ 200 (265)
T 3rsi_A 181 FGLVGHVVPAG-TALDKARSL 200 (265)
T ss_dssp TTSCSEEESTT-CHHHHHHHH
T ss_pred CCCccEecChh-HHHHHHHHH
Confidence 89999999754 344444444
No 308
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=77.34 E-value=1.2 Score=52.52 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=32.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+
T Consensus 96 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~ 131 (261)
T 1ef8_A 96 PKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSM 131 (261)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeC
Confidence 469999999999999999999999999999987554
No 309
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=77.24 E-value=1.4 Score=47.28 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=67.8
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccc--eeEE-EEEeccCCCCCChhhhhccEEE-EccCCCCCCCccC
Q 000092 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKA--ILLV-AMATPEDMRINAEHIRIADQFV-EVPGGTNNNNYAN 119 (2267)
Q Consensus 48 ~kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~--i~~v-~~~t~~D~~~~a~~vr~ADe~v-~vp~~~~~~~Y~d 119 (2267)
.++|.|+|. |-.+..+++.+++.||+++..+.. -+.+ .+-++.+...-. .-.|-++ .+|. ..
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~---~~vDlavi~vp~-------~~ 82 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLK---EPVDILDVFRPP-------SA 82 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCC---SCCSEEEECSCH-------HH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCC---CCCCEEEEEeCH-------HH
Confidence 478999998 678899999999999987744433 2221 122222211100 1234333 3332 12
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 120 vd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
+..+++-|.+.++.++|.-.|+. +.++.+.++++|+.++||.---+
T Consensus 83 ~~~v~~~~~~~gi~~i~~~~g~~--~~~~~~~a~~~Gir~vgpnc~g~ 128 (140)
T 1iuk_A 83 LMDHLPEVLALRPGLVWLQSGIR--HPEFEKALKEAGIPVVADRCLMV 128 (140)
T ss_dssp HTTTHHHHHHHCCSCEEECTTCC--CHHHHHHHHHTTCCEEESCCHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCcC--HHHHHHHHHHcCCEEEcCCccce
Confidence 44556666778888888776664 45688888889999999865443
No 310
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=77.09 E-value=2.3 Score=48.94 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=34.9
Q ss_pred ceEEEEEcCcccchhhhhhccCCe--EEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~--~I~~~~a~i~ltGp 1780 (2267)
.|+++++.|.+.++|++++.-||. ++|.+++.+++..|
T Consensus 104 ~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p 143 (218)
T 1y7o_A 104 ADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQP 143 (218)
T ss_dssp SCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCC
T ss_pred CCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEecc
Confidence 489999999999999999999999 99999999888766
No 311
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=76.97 E-value=1.2 Score=53.26 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=32.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+
T Consensus 126 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~ 161 (287)
T 2vx2_A 126 PVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFAT 161 (287)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEEC
Confidence 469999999999999999999999999999976543
No 312
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=76.81 E-value=30 Score=42.31 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=64.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--------CCCCchhhhhhc----------------h----HHHHHH
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--------GFSGGQRDLFEG----------------I----LQAGST 1992 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--------Gf~~G~~~e~~g----------------i----lk~ga~ 1992 (2267)
..+.++......++++.+.. ..+=+|+|.-.+ .|+.|..-...+ . ......
T Consensus 79 NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
T 3t8b_A 79 NAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILE 158 (334)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHH
Confidence 57899999999999998876 467788876654 266664311000 0 011335
Q ss_pred HHHHHhcCCCCEEEEEccCCcCCch-hHhhhccccCCccceeecc-cccEEEeeC
Q 000092 1993 IVENLRTYKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYAD-RTAKGNVLE 2045 (2267)
Q Consensus 1993 iv~al~~~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~-p~A~~gvl~ 2045 (2267)
++..+..+.+|+|+.|- |-+.|| .-+++. +|+ ++|. ++|+++.-+
T Consensus 159 ~~~~i~~~~kPvIAaV~--G~A~GgG~~Lala----cD~--riAs~~~A~f~~pe 205 (334)
T 3t8b_A 159 VQRLIRFMPKVVICLVN--GWAAGGGHSLHVV----CDL--TLASREYARFKQTD 205 (334)
T ss_dssp HHHHHHHSSSEEEEEEC--SEEETHHHHHHHH----SSE--EEEETTTCEEECCC
T ss_pred HHHHHHhCCCCEEEEEC--CccccCcchhHhh----CCE--EEEeCCCcEEECcc
Confidence 67788899999999997 666664 444554 377 7888 888887643
No 313
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Probab=76.79 E-value=26 Score=43.22 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh--hhh----------chHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD--LFE----------GILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~--e~~----------gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.........++++.+.. ..+=+|+|.-.+ .|+.|..- +.. ...+....++..+..+.+|+|+
T Consensus 28 Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 107 (363)
T 3bpt_A 28 NALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVA 107 (363)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57889999999999998865 467788887654 37665421 110 1112233567789999999999
Q ss_pred EEccCCcCCchhHhhhccccCCccceeecccccEEEee
Q 000092 2007 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2007 vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
.|- |.+.||+..... ..|+ ++|.++|+++.-
T Consensus 108 av~--G~a~GgG~~Lal---acD~--ria~~~a~f~~p 138 (363)
T 3bpt_A 108 LIH--GITMGGGVGLSV---HGQF--RVATEKCLFAMP 138 (363)
T ss_dssp EEC--SEEETHHHHTTT---TSSE--EEECTTCEEECC
T ss_pred EEC--CEEehHHHHHHH---hCCE--EEEcCCeEEeCC
Confidence 996 767766543222 3477 888888887763
No 314
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=76.57 E-value=1.4 Score=52.05 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=53.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +-...
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A-~eA~~ 176 (265)
T 3qxz_A 98 RTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSA-QRAVE 176 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCH-HHHHH
T ss_pred CCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCH-HHHHH
Confidence 4699999999999999999999999999999875432 1122333333221 011112222 22346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.++++ .+..+.+++|
T Consensus 177 ~GLv~~vv~~-~~l~~~a~~~ 196 (265)
T 3qxz_A 177 TGLANRCLPA-GKVLGAALRM 196 (265)
T ss_dssp HTSCSEEECH-HHHHHHHHHH
T ss_pred CCCccEeeCH-HHHHHHHHHH
Confidence 8999999964 4444444444
No 315
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=76.50 E-value=1.3 Score=52.25 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=54.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +=...
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a-~eA~~ 176 (261)
T 3pea_A 98 SKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITG-AEALK 176 (261)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH-HHHHH
Confidence 4699999999999999999999999999999865432 2233444444321 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+++|..
T Consensus 177 ~GLv~~vv~~-~~l~~~a~~~a~ 198 (261)
T 3pea_A 177 WGLVNGVFAE-ETFLDDTLKVAK 198 (261)
T ss_dssp HTSSSEEECG-GGHHHHHHHHHH
T ss_pred CCCccEecCH-HHHHHHHHHHHH
Confidence 8999999874 444445555443
No 316
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=76.18 E-value=1.4 Score=51.89 Aligned_cols=84 Identities=15% Similarity=0.054 Sum_probs=51.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEe--cCCcceec-----------chHHHHHhhcccc----ccccccCCccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQR--LDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIM 1804 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~--~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~ 1804 (2267)
..|+|+.|.|.|+|+|..++..||++|+. +++.+.+. |..-+-..+|... .-+...+.+. =.
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~-eA 175 (260)
T 1sg4_A 97 NLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPA-EA 175 (260)
T ss_dssp SSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHH-HH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHH-HH
Confidence 46999999999999999999999999999 77764332 1222334444321 0011112222 23
Q ss_pred cccCceEEEecCcHHHHHHHHHH
Q 000092 1805 ATNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1805 ~~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
..-|++|.++++ .+..+.+++|
T Consensus 176 ~~~GLv~~vv~~-~~l~~~a~~~ 197 (260)
T 1sg4_A 176 LQVGIVDQVVPE-EQVQSTALSA 197 (260)
T ss_dssp HHHTSSSEEECG-GGHHHHHHHH
T ss_pred HHcCCCCEecCH-HHHHHHHHHH
Confidence 468899988853 3334444444
No 317
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=76.18 E-value=1.2 Score=52.81 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=32.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~ 142 (273)
T 2uzf_A 107 PKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQ 142 (273)
T ss_dssp SSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEEC
Confidence 469999999999999999999999999999986544
No 318
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=76.13 E-value=12 Score=44.30 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=64.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEec-----CC--CCCCchhh--hh-------hchH-HHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILAN-----WR--GFSGGQRD--LF-------EGIL-QAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d-----~~--Gf~~G~~~--e~-------~gil-k~ga~iv~al~~~~vP 2003 (2267)
..++++......++++.++. ..+=+|+|.- .+ .|+.|..- +. .+.. .....++..+..+.+|
T Consensus 32 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 111 (275)
T 4eml_A 32 NAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKV 111 (275)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCC
Confidence 68899999999999998865 5677888876 33 46666421 00 0000 0134577888999999
Q ss_pred EEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2004 VFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+|+.|- |.+.||+ .+++. .|+ ++|.++|++|.
T Consensus 112 vIAav~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 144 (275)
T 4eml_A 112 VIALVA--GYAIGGGHVLHLV----CDL--TIAADNAIFGQ 144 (275)
T ss_dssp EEEEEC--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEEEEC--CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 999996 6666654 44444 487 89999999887
No 319
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=76.08 E-value=49 Score=39.12 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=59.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhh-hh-h-------chHH-H---HHH-HHHHHhcCCCCEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-LF-E-------GILQ-A---GST-IVENLRTYKQPVF 2005 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~-e~-~-------gilk-~---ga~-iv~al~~~~vP~i 2005 (2267)
..+.++......++++.+.+ ..+=+|+|.-. +.|+.|..- +. . .... . ... ++..+..+.+|+|
T Consensus 31 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 110 (276)
T 2j5i_A 31 NAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTI 110 (276)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57889999999999998876 35556666543 347766431 11 0 0001 1 112 2455677889999
Q ss_pred EEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |.+.|| ..+++. .|+ ++|.++++++.
T Consensus 111 Aav~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 141 (276)
T 2j5i_A 111 AMVN--GWCFGGGFSPLVA----CDL--AICADEATFGL 141 (276)
T ss_dssp EEEC--SCEEGGGHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEEC--CeeehhHHHHHHh----CCE--EEEcCCCEEeC
Confidence 9986 666664 444554 477 88888888876
No 320
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=76.07 E-value=1.4 Score=52.25 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=53.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec----------chHHHHHhhcccc----ccccc--cCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHM--QLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt----------Gp~al~~~lG~ev----y~s~~--~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|... .-+.. .+.+ +=..
T Consensus 110 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A-~eA~ 188 (274)
T 3tlf_A 110 AKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAGRELVRVSRVLPRSIALRMALMGKHERMSA-QRAY 188 (274)
T ss_dssp CSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCCCHHHHHHTTTSCHHHHHHHHHHGGGCCEEH-HHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcccchHHHHHHHHhCHHHHHHHHHcCCCCccCH-HHHH
Confidence 4699999999999999999999999999999864432 1122333333221 00111 1111 2234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.+++++ +..+.+++|..
T Consensus 189 ~~GLv~~vv~~~-~l~~~a~~~a~ 211 (274)
T 3tlf_A 189 ELGLISEIVEHD-RLLERAHEIAD 211 (274)
T ss_dssp HHTSSSEEECGG-GHHHHHHHHHH
T ss_pred HCCCCCeecCHH-HHHHHHHHHHH
Confidence 689999999754 44445555543
No 321
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=76.05 E-value=1.3 Score=52.49 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=32.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+
T Consensus 108 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~ 143 (267)
T 3oc7_A 108 RLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFAL 143 (267)
T ss_dssp SSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEEC
T ss_pred CCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeC
Confidence 469999999999999999999999999999986543
No 322
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=75.74 E-value=1.4 Score=52.05 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=50.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +=...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A-~eA~~ 179 (262)
T 3r9q_A 101 SKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHA-NEALD 179 (262)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH-HHHHH
Confidence 4699999999999999999999999999999865432 2223444444321 001111111 22346
Q ss_pred cCceEEEecCc
Q 000092 1807 NGVVHLTVSDD 1817 (2267)
Q Consensus 1807 nGv~d~~v~dd 1817 (2267)
-|++|.+++++
T Consensus 180 ~GLv~~vv~~~ 190 (262)
T 3r9q_A 180 IGLVNRVVARG 190 (262)
T ss_dssp TTSCSEEECTT
T ss_pred cCCccEecChh
Confidence 89999999754
No 323
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A
Probab=75.68 E-value=1.5 Score=52.95 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=32.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+
T Consensus 140 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~ 175 (305)
T 3m6n_A 140 RAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGL 175 (305)
T ss_dssp TCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEEC
Confidence 479999999999999999999999999999976443
No 324
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=75.51 E-value=1.4 Score=52.10 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=52.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec--------c---hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT--------G---FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt--------G---p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. + ..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 185 (264)
T 3he2_A 107 PMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEI-ALH 185 (264)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHH-HHH
Confidence 4699999999999999999999999999999864432 1 112333334321 00111111111 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++ ..++.+.+.++.
T Consensus 186 ~GLV~~v~~-~~~a~~~A~~la 206 (264)
T 3he2_A 186 TGMANRIGT-LADAQAWAAEIA 206 (264)
T ss_dssp HTSCSEECC-HHHHHHHHHHHH
T ss_pred CCCeEEEec-HHHHHHHHHHHH
Confidence 899999885 445544444443
No 325
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=75.34 E-value=2.2 Score=50.53 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=52.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-----------cc-hHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-----------TG-FSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-----------tG-p~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+| |..++..||++|+.+++.+.+ .| ..-+-+.+|... .-+...+.+.+ ..
T Consensus 117 ~kPvIAav~G~a~G-G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~e-A~ 194 (263)
T 2j5g_A 117 EVPVISAVNGAALL-HSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQ-AY 194 (263)
T ss_dssp CSCEEEEECSEECS-CGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHH-HH
T ss_pred CCCEEEEECCcchH-HHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HH
Confidence 46999999999994 899999999999999987665 12 223444455322 11111222222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.-|++|.+++++ +..+.+.+|
T Consensus 195 ~~GLv~~vv~~~-~l~~~a~~~ 215 (263)
T 2j5g_A 195 ELNVVHEVLPQS-KLMERAWEI 215 (263)
T ss_dssp HTTSCSEEECGG-GHHHHHHHH
T ss_pred HCCCccEecChH-HHHHHHHHH
Confidence 699999999754 333334443
No 326
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=75.28 E-value=1.4 Score=52.70 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=53.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec------------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT------------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt------------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+.+ ..
T Consensus 123 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~ 201 (290)
T 3sll_A 123 HQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADE-AE 201 (290)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HH
T ss_pred CCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 4699999999999999999999999999999764321 1223444455321 11111222222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.-|++|.+++++ +..+.+++|
T Consensus 202 ~~GLV~~vv~~~-~l~~~a~~~ 222 (290)
T 3sll_A 202 RIGLVSRKVASE-SLLEECYAI 222 (290)
T ss_dssp HHTSSSEEECGG-GHHHHHHHH
T ss_pred HCCCccEEeChh-HHHHHHHHH
Confidence 689999999754 344444444
No 327
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=75.26 E-value=1.5 Score=51.71 Aligned_cols=85 Identities=18% Similarity=0.059 Sum_probs=53.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +=...
T Consensus 92 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a-~eA~~ 170 (256)
T 3pe8_A 92 TKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSA-QDALR 170 (256)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCH-HHHHH
Confidence 4699999999999999999999999999999875432 2223444444321 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+.+|.
T Consensus 171 ~GLv~~vv~~~-~l~~~a~~~a 191 (256)
T 3pe8_A 171 AGLVTEVVAHD-DLLTAARRVA 191 (256)
T ss_dssp HTSCSCEECGG-GHHHHHHHHH
T ss_pred CCCCeEEeCHh-HHHHHHHHHH
Confidence 89999998753 4444444443
No 328
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=74.84 E-value=1.5 Score=51.81 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=49.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |...|-+.+|... .-+.+.+.+ +=...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A-~eA~~ 179 (267)
T 3r9t_A 101 DKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSA-AAARD 179 (267)
T ss_dssp SSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCH-HHHHH
Confidence 5799999999999999999999999999999764432 1223444444322 001111111 12346
Q ss_pred cCceEEEecCc
Q 000092 1807 NGVVHLTVSDD 1817 (2267)
Q Consensus 1807 nGv~d~~v~dd 1817 (2267)
-|++|.+++++
T Consensus 180 ~GLv~~vv~~~ 190 (267)
T 3r9t_A 180 WGLINEVVEAG 190 (267)
T ss_dssp HTSSSEEECTT
T ss_pred CCCccEEcChh
Confidence 89999998754
No 329
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=74.55 E-value=1.6 Score=51.46 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |-.-+-+.+|... .-+.+.+.+ +=...
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a-~eA~~ 173 (258)
T 4fzw_A 95 NKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITA-QQAQQ 173 (258)
T ss_dssp CSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcH-HHHHH
Confidence 3699999999999999999999999999999864432 2233444555322 011111211 22346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+++|..-
T Consensus 174 ~GLv~~vv~~~-~l~~~a~~~a~~ 196 (258)
T 4fzw_A 174 AGLVSDVFPSD-LTLEYALQLASK 196 (258)
T ss_dssp HTSCSEEECTT-THHHHHHHHHHH
T ss_pred CCCeeEEeCch-HHHHHHHHHHHH
Confidence 89999999754 344445555443
No 330
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=74.51 E-value=2.5 Score=47.21 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=16.1
Q ss_pred eeCCCCccCCCCEEEEEec
Q 000092 738 KMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 738 i~~~G~~v~~G~~La~l~~ 756 (2267)
.+++||.|.+||+|+++++
T Consensus 121 ~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 121 IAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp CSCTTCEECTTCEEEEECH
T ss_pred EEeCcCEEcCCCEEEEECH
Confidence 3788899999999999875
No 331
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=74.33 E-value=12 Score=45.13 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=73.2
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-------hccEEEEccCCCCCCCccCH
Q 000092 49 HSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-------IADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr-------~ADe~v~vp~~~~~~~Y~dv 120 (2267)
++|||.|. |.++..+++.+.+.|++++ ++.- +...+..... .--+.+.. ++.|.
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~---------~l~R--~~~~~~~~~~~~~~l~~~~v~~~~~-------Dl~d~ 72 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTY---------ILAR--PGPRSPSKAKIFKALEDKGAIIVYG-------LINEQ 72 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEE---------EEEC--SSCCCHHHHHHHHHHHHTTCEEEEC-------CTTCH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEE---------EEEC--CCCCChhHHHHHHHHHhCCcEEEEe-------ecCCH
Confidence 58999997 9999999999999998875 2222 1111111111 11123332 55678
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCC--CCCchHHHHHHcC-CeEe-----CCC-------HHHHHHhcCHHHHHHHHHHcCC
Q 000092 121 QLIVEMAEMTRVDAVWPGWGHAS--EIPELPDTLSTKG-IIFL-----GPP-------ATSMAALGDKIGSSLIAQAANV 185 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~G~~s--En~~la~~l~~~G-I~fi-----GPs-------~eam~~lgDK~~~k~laq~aGV 185 (2267)
+.+.++.++.++|+|+...+... ....+.+++.+.| +..+ |.+ .........|......+++.|+
T Consensus 73 ~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~e~~~~~p~~~y~~sK~~~e~~l~~~g~ 152 (346)
T 3i6i_A 73 EAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRVRQLVEESGI 152 (346)
T ss_dssp HHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECSCCSSCTTTCCCCTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEeecccCCCCCccCcCCCcchHHHHHHHHHHHHHHcCC
Confidence 88888888888898886655321 1112345666666 4322 211 1123344578999999999887
Q ss_pred CC
Q 000092 186 PT 187 (2267)
Q Consensus 186 Pt 187 (2267)
|.
T Consensus 153 ~~ 154 (346)
T 3i6i_A 153 PF 154 (346)
T ss_dssp CB
T ss_pred CE
Confidence 64
No 332
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A
Probab=74.14 E-value=1.5 Score=51.99 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=32.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1777 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l 1777 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~ 142 (272)
T 3qk8_A 107 DKPVVSAIRGPAVGAGLVVALLADISVASATAKIID 142 (272)
T ss_dssp CSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEEC
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEEC
Confidence 469999999999999999999999999999987544
No 333
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}
Probab=74.02 E-value=1.5 Score=50.83 Aligned_cols=87 Identities=17% Similarity=0.091 Sum_probs=53.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC-Cc-------ceec-ch---HHHHHhhccccccccccCCcccc----cc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QP-------IILT-GF---SALNKLLGREVYSSHMQLGGPKI----MA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~-------i~lt-Gp---~al~~~lG~evy~s~~~lGG~~i----~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.++ +. +++. +. ..+-..+|..... ..-+-|-.+ ..
T Consensus 94 ~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~-~l~ltg~~i~A~eA~ 172 (232)
T 3ot6_A 94 PFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFN-RSVINAEMFDPEGAM 172 (232)
T ss_dssp SSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHH-HHHTSCCEECHHHHH
T ss_pred CCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHH-HHHHcCCccCHHHHH
Confidence 4699999999999999999999999999997 44 3443 11 1122233432200 011122222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
.-|++|.++++ .+..+.+++|..-
T Consensus 173 ~~GLv~~vv~~-~~l~~~a~~~a~~ 196 (232)
T 3ot6_A 173 AAGFLDKVVSV-EELQGAALAVAAQ 196 (232)
T ss_dssp HHTSCSEEECT-TTHHHHHHHHHHH
T ss_pred HCCCCCEecCH-HHHHHHHHHHHHH
Confidence 68999999974 3444555555443
No 334
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=73.82 E-value=2 Score=48.32 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=24.9
Q ss_pred EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEE
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ 736 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~ 736 (2267)
++|++|+.|++||.||+=. +|.|..+|+|.
T Consensus 23 L~V~dG~~VkkG~~laeWD------PIitE~~G~V~ 52 (193)
T 2xha_A 23 LHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 52 (193)
T ss_dssp ESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence 5799999999999999865 77777777763
No 335
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=73.75 E-value=8.7 Score=44.74 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=62.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhhhchHHH------HHHHHHHHhcCCCCEEEEEccCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLFEGILQA------GSTIVENLRTYKQPVFVYIPMMAE 2013 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~~gilk~------ga~iv~al~~~~vP~i~vI~~~g~ 2013 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-. . .... ...++..+..+.+|+|+.|- |.
T Consensus 25 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~-~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G~ 100 (243)
T 2q35_A 25 NGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKE-F-LIRKTRGEVEVLDLSGLILDCEIPIIAAMQ--GH 100 (243)
T ss_dssp SBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHH-H-HHHHHTTCCCCCCCHHHHHTCCSCEEEEEC--SE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChH-H-HhhccchhhHHHHHHHHHHhCCCCEEEEEc--Cc
Confidence 57889999999999998866 467777776543 366664211 0 0000 12456778899999999996 66
Q ss_pred CCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2014 LRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2014 ~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.||++ +++. .|+ ++|.++++++.
T Consensus 101 a~GgG~~lala----cD~--ria~~~a~f~~ 125 (243)
T 2q35_A 101 SFGGGLLLGLY----ADF--VVFSQESVYAT 125 (243)
T ss_dssp EETHHHHHHHT----SSE--EEEESSSEEEC
T ss_pred cccchHHHHHh----CCE--EEEeCCCEEEC
Confidence 666544 4444 477 88999998876
No 336
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=73.55 E-value=34 Score=46.01 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-hh-----------hchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-----------EGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e~-----------~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
.++++.......++++.+.. ..+-.|+|.--. .|..|..- +. ....+....++..+..+..|+|+.
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 109 (715)
T 1wdk_A 30 NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAA 109 (715)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57888889999999988865 467788887633 37776421 11 011234556788899999999999
Q ss_pred EccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.| |..+++++ |+ .+|.+++++|.
T Consensus 110 v~--G~a~GgG~elalac----D~--ria~~~a~fgl 138 (715)
T 1wdk_A 110 IN--GIALGGGLEMCLAA----DF--RVMADSAKIGL 138 (715)
T ss_dssp EC--SCEETHHHHHHHTS----SE--EEEETTCEEEC
T ss_pred EC--CEeeHHHHHHHHHC----CE--EEEeCCCEEeC
Confidence 96 55555 55555554 66 78888888765
No 337
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3
Probab=73.08 E-value=27 Score=41.11 Aligned_cols=94 Identities=14% Similarity=0.090 Sum_probs=64.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-----h------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-----F------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-----~------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++......++++.+.+ ..+=+|+|.-. +.|+.|..-. . ....+....++.++..+.+|+|+.|
T Consensus 32 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (264)
T 1wz8_A 32 NAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAV 111 (264)
T ss_dssp GCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57888999999999998876 45666766543 3476664321 0 0112334566788899999999999
Q ss_pred ccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |.+.||+ .+++. .|+ .+|.+++++|.
T Consensus 112 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 139 (264)
T 1wz8_A 112 E--KVAVGAGLALALA----ADI--AVVGKGTRLLD 139 (264)
T ss_dssp C--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred C--CeeechhHHHHHh----CCE--EEecCCCEEeC
Confidence 6 6666654 44444 477 88888888876
No 338
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=72.50 E-value=2.4 Score=59.10 Aligned_cols=43 Identities=26% Similarity=0.536 Sum_probs=35.0
Q ss_pred EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCcc
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAM 745 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v 745 (2267)
++|++|+.|++||.|++-. .-..+|.|..+|+|++. +.+|-++
T Consensus 1003 l~v~~g~~V~~g~~ia~wD--p~~~piise~~G~v~f~d~~~g~t~ 1046 (1407)
T 3lu0_D 1003 LAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVRFTDMIDGQTI 1046 (1407)
T ss_dssp ESSCSSCEECTTCEEEECC--SSCCCEECSSCEEEEEESCCBTTTE
T ss_pred EEEcCCCEecCCCEEEEEe--cCceeEEeccceEEEEeeeccCcee
Confidence 6799999999999999885 56788999999999875 5555444
No 339
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=71.89 E-value=3.4 Score=45.20 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=44.8
Q ss_pred eecCCCceeEEEEccCCCEEcCCCcEEEEEcccccee-eecCCCcEEEEe
Q 000092 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK 738 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~-l~ap~~G~v~~i 738 (2267)
..=|.-|..+-..+.+|++|.+|+.+|-|.+=|-|.- ++||.+|+|..+
T Consensus 103 ~lvpaeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v 152 (169)
T 3d4r_A 103 ISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFM 152 (169)
T ss_dssp EEEEECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEE
T ss_pred EEEEeCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEE
Confidence 4568889999999999999999999999999999986 899999999877
No 340
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=71.77 E-value=1.8 Score=53.35 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=38.3
Q ss_pred EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
..|+.|+....=.....|++- -+..|.++.+|+|..+ +++|+.|++||+|++|+.
T Consensus 21 ~~v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 21 VTLEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp --------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 345555544444555667764 4568999999999999 999999999999999964
No 341
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=71.32 E-value=27 Score=41.42 Aligned_cols=95 Identities=11% Similarity=0.014 Sum_probs=63.8
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h------h-----c----hH----HHHHHHHHHHh
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F------E-----G----IL----QAGSTIVENLR 1998 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~------~-----g----il----k~ga~iv~al~ 1998 (2267)
...+.++......++++.+++ ..+-+|+|.-.+ .|+.|..-. . . . .. .....++.++.
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 109 (280)
T 1pjh_A 30 LNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFI 109 (280)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999998876 467777776543 376664211 0 0 0 00 11235677888
Q ss_pred cCCCCEEEEEccCCcCCchh-HhhhccccCCccceeecc-cccEEEe
Q 000092 1999 TYKQPVFVYIPMMAELRGGA-WVVVDSRINSDHIEMYAD-RTAKGNV 2043 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~-p~A~~gv 2043 (2267)
.+.+|+|+.|- |.+.||+ .+++. .|+ ++|. ++++++.
T Consensus 110 ~~~kPvIAav~--G~a~GgG~~Lala----cD~--~ia~~~~a~f~~ 148 (280)
T 1pjh_A 110 KHSKVLICCLN--GPAIGLSAALVAL----CDI--VYSINDKVYLLY 148 (280)
T ss_dssp HCCSEEEEEEC--SCEEHHHHHHHHH----SSE--EEESSTTCEEEC
T ss_pred hCCCCEEEEEC--CeeeeHHHHHHHH----CCE--EEEeCCCCEEeC
Confidence 99999999996 6666654 44444 477 8888 8888876
No 342
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=71.08 E-value=5.6 Score=41.69 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=57.1
Q ss_pred ccEEEEECchHHHHHHHHHHHHc-CCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTW-AYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~l-G~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
.++++|+|.|..|..+++.+++. ||++ ++++. | ++.........--+ +. .+.+.++
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~v---------vg~~d--~-~~~~~g~~i~g~pV----------~g-~~~l~~~ 60 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHP---------IAFID--D-DRKKHKTTMQGITI----------YR-PKYLERL 60 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEE---------EEEEC--S-CGGGTTCEETTEEE----------EC-GGGHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEE---------EEEEE--C-CcccCCCEecCeEE----------EC-HHHHHHH
Confidence 47899999999999999999875 4444 44443 2 11111111111111 12 4567888
Q ss_pred HHHcCCCEEEeCCCcCCC--CCchHHHHHHcCCeE-eCCCHH
Q 000092 127 AEMTRVDAVWPGWGHASE--IPELPDTLSTKGIIF-LGPPAT 165 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sE--n~~la~~l~~~GI~f-iGPs~e 165 (2267)
++++++|.|+...+..+. ..++.+.|.+.|+.+ +-|+..
T Consensus 61 ~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~ 102 (141)
T 3nkl_A 61 IKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLD 102 (141)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHH
T ss_pred HHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHH
Confidence 899999999876543321 123556677788876 445554
No 343
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=70.54 E-value=18 Score=42.87 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=61.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-hh--------hch-HHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LF--------EGI-LQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e~--------~gi-lk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..- +. ... ......++..+..+.+|+|+.|
T Consensus 35 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T 2uzf_A 35 NAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMV 114 (273)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEE
Confidence 57889999999999998865 456677776543 35544321 00 000 0012356778889999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.|| ..+++. .|+ ++|.+++++|.
T Consensus 115 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 142 (273)
T 2uzf_A 115 K--GYAVGGGNVLNVV----CDL--TIAADNAIFGQ 142 (273)
T ss_dssp C--EEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred C--CEEeehhHHHHHh----CCE--EEEcCCCEEEC
Confidence 6 666664 444554 477 88888888876
No 344
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}
Probab=70.30 E-value=17 Score=45.73 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchh--hhh--------------hchHHHHHHHHHHHhcCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQR--DLF--------------EGILQAGSTIVENLRTYKQ 2002 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~--~e~--------------~gilk~ga~iv~al~~~~v 2002 (2267)
..+..+......++++.+.+ ..+-+|+|.-.+ .|..|.. .+. .........++..+..+.+
T Consensus 64 NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k 143 (407)
T 3ju1_A 64 NALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGK 143 (407)
T ss_dssp SCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 58889999999999998865 456777777654 3766642 111 1111223456778999999
Q ss_pred CEEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2003 PVFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2003 P~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+|+.|- |-+.||+ .+++. .|+ ++|.++|+++.
T Consensus 144 PvIAaVn--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 177 (407)
T 3ju1_A 144 PVLVWGD--GIVMGGGLGLMAG----ASH--KVVTETSRIAM 177 (407)
T ss_dssp CEEEECC--SEEETHHHHHHHH----CSE--EEECTTCEEEC
T ss_pred CEEEEEC--CccccCcchHHhc----CCE--EEEcCCCEEeC
Confidence 9999886 6666654 44444 366 77877777765
No 345
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=70.16 E-value=14 Score=43.82 Aligned_cols=95 Identities=18% Similarity=0.099 Sum_probs=66.5
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-----------hhchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
...++++......++++.+.+ ..+-+|+|.-. +.|+.|..-. .....+....++..+..+.+|+|+.
T Consensus 49 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 128 (276)
T 3rrv_A 49 LNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAA 128 (276)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 368899999999999998876 46777777544 3477774211 0112334556788899999999999
Q ss_pred EccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |.+.|| ..+++. .|+ ++|.++++++.
T Consensus 129 v~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 157 (276)
T 3rrv_A 129 VN--GPAVGLGCSLVAL----SDI--VYIAENAYLAD 157 (276)
T ss_dssp EC--SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred EC--ceeeHHHHHHHHH----CCE--EEEeCCCEEEC
Confidence 97 666664 444554 477 88888888875
No 346
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=69.66 E-value=34 Score=40.09 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=60.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h-hhch-----HHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L-FEGI-----LQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e-~~gi-----lk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..++++...-..++++.+.+ .++=+|+|.-.+ .|+.|..- + .... .......+..+..+.+|+|+.|- |
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 106 (260)
T 1mj3_A 29 NALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVN--G 106 (260)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEEC--S
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHHHHHHHHHhCCCCEEEEEC--C
Confidence 57889999999999998865 456677775542 36555421 1 1000 00011124567788899999996 6
Q ss_pred cCCch-hHhhhccccCCccceeecccccEEEeeC
Q 000092 2013 ELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2013 ~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
-+.|| ..+++. .|+ ++|.+++++|.-+
T Consensus 107 ~a~GgG~~lala----cD~--ria~~~a~f~~pe 134 (260)
T 1mj3_A 107 YALGGGCELAMM----CDI--IYAGEKAQFGQPE 134 (260)
T ss_dssp EEETHHHHHHHH----SSE--EEEETTCEEECGG
T ss_pred EEEeHHHHHHHh----CCE--EEEcCCCEEeCcc
Confidence 66664 444554 477 8888888887633
No 347
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Probab=69.64 E-value=2.3 Score=52.66 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=34.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1779 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG 1779 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-
T Consensus 102 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe 139 (363)
T 3bpt_A 102 QKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPE 139 (363)
T ss_dssp SSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCG
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCc
Confidence 46999999999999999999999999999998766654
No 348
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=68.01 E-value=1.1 Score=55.02 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=41.3
Q ss_pred EccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 702 LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 702 ~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.|+.|+.-..=.....|++- -+..|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 11 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 11 EVKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EEEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 34444444444555666654 3568999999999999 9999999999999998643
No 349
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=67.84 E-value=5.6 Score=45.67 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=33.7
Q ss_pred ceEEEEEcCcccchhhhhhccCCe--EEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~--~I~~~~a~i~ltGp 1780 (2267)
.|+++++.|.+..+|+|++.-||. ++|.+++.|++.-|
T Consensus 97 ~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p 136 (215)
T 2f6i_A 97 SDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQP 136 (215)
T ss_dssp SCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCT
T ss_pred CCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEecc
Confidence 378888889999999999999999 99999999887665
No 350
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=67.30 E-value=3.6 Score=46.43 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=38.4
Q ss_pred EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccC
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQ 746 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~ 746 (2267)
++|++|+.|++||.||+. .+-..+|.+..+|+|++. +-+|.++.
T Consensus 64 L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~~ 108 (190)
T 2auk_A 64 LAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTIT 108 (190)
T ss_dssp ESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTEE
T ss_pred EEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcceE
Confidence 589999999999999977 578899999999999998 87776554
No 351
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=66.36 E-value=3.6 Score=55.47 Aligned_cols=85 Identities=22% Similarity=0.213 Sum_probs=56.1
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccccccccCCcccc----cccc
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MATN 1807 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy~s~~~lGG~~i----~~~n 1807 (2267)
.|+|+.|.|.|+|||.-++..||++|+.+++.+++. |-.-|-+++|..... ..=+.|-.+ ...-
T Consensus 107 kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~-~l~ltG~~i~a~eA~~~ 185 (742)
T 3zwc_A 107 KPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVAL-DLITSGKYLSADEALRL 185 (742)
T ss_dssp SCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHH-HHHHHCCCEEHHHHHHH
T ss_pred CCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHH-HHHHcCCchhHHHHHHc
Confidence 699999999999999999999999999999865432 233455555543210 011122222 3469
Q ss_pred CceEEEecCcH--HHHHHHHHHH
Q 000092 1808 GVVHLTVSDDL--EGISAILKWL 1828 (2267)
Q Consensus 1808 Gv~d~~v~dd~--e~~~~i~~~L 1828 (2267)
|++|.++++|. ++++.+.++.
T Consensus 186 GLv~~vv~~d~~~~A~~~A~~ia 208 (742)
T 3zwc_A 186 GILDAVVKSDPVEEAIKFAQKII 208 (742)
T ss_dssp TSCSEEESSCHHHHHHHHHHHHT
T ss_pred CCccEecCchhhHHHHHHHHHHh
Confidence 99999998765 3344444443
No 352
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=66.17 E-value=15 Score=43.16 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=61.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhhh-hch--------HHHHHHHHHHH-hcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-EGI--------LQAGSTIVENL-RTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e~-~gi--------lk~ga~iv~al-~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.+ ..+-+|+|.-. +.|+.|..-.. ... .+.....+..+ ..+..|+|+.|-
T Consensus 31 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~ 110 (265)
T 3swx_A 31 NAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVH 110 (265)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCCCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 68899999999999998865 46777777654 35877753111 000 00111223445 678899999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEee
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|.+.||+ .+++. .|+ ++|.++++++.-
T Consensus 111 --G~a~GgG~~lala----cD~--~ia~~~a~f~~p 138 (265)
T 3swx_A 111 --GKVLTLGIELALA----ADI--VIADETATFAQL 138 (265)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTCEEECG
T ss_pred --CeeehHHHHHHHH----CCE--EEEcCCCEEECc
Confidence 6666654 44444 477 888888888763
No 353
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=66.14 E-value=7.2 Score=43.56 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=25.5
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
--+.|+=...+|++||+|++||+|+++.-
T Consensus 111 V~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 111 VELKGEGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred cccCCccceEEEeCcCEEcCCCEEEEECH
Confidence 45678888999999999999999999864
No 354
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=65.92 E-value=4.4 Score=50.86 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=42.2
Q ss_pred EEccCCCEEcCCCcEEEEEcc-ccceeeecCCCcEEEEe-e-CCCCccCCCCEEEEEecC
Q 000092 701 YLVSDGSHIDADTPYAEVEVM-KMCMPLLSPASGVLQFK-M-AEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaM-KM~~~l~ap~~G~v~~i-~-~~G~~v~~G~~La~l~~~ 757 (2267)
..|+.|+....=.....|++. .-+..|.++.+|+|..+ + ++|+.|++||+|++|+..
T Consensus 97 ~~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 97 ATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp EECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred EEEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence 334444444444455666642 44678999999999999 7 999999999999999843
No 355
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}
Probab=65.82 E-value=2.9 Score=51.51 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=33.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT 1778 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt 1778 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.
T Consensus 105 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~p 141 (353)
T 4hdt_A 105 PKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMP 141 (353)
T ss_dssp SSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECC
T ss_pred CCCEEEEeECceeecCccccCCcCeeccchhccccCc
Confidence 3699999999999999999999999999999876664
No 356
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=65.67 E-value=9.9 Score=44.61 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=61.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-h-h-------chHHHHHHHHHHH-hcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-E-------GILQAGSTIVENL-RTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~-~-------gilk~ga~iv~al-~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.-. +.|+.|..-. . . ...+.....+..+ ..+.+|+|+.|-
T Consensus 34 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~ 113 (258)
T 3lao_A 34 NAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQ 113 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58889999999999998875 46777777554 3577775311 0 0 0011112334556 788899999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|.++++++.
T Consensus 114 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 140 (258)
T 3lao_A 114 --GTCWTAGIELMLN----ADI--AVAARGTRFAH 140 (258)
T ss_dssp --SEEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred --CEeEhHHHHHHHh----CCE--EEEcCCCEEeC
Confidence 6666654 44444 477 88888888776
No 357
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=64.70 E-value=3.3 Score=48.29 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=35.3
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp 1780 (2267)
.|+|+.+.|.|.|+|.|++..||++++.+++.+++.|.
T Consensus 80 kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv 117 (240)
T 3rst_A 80 KPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGV 117 (240)
T ss_dssp CCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCC
T ss_pred CeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccce
Confidence 59999999999999999999999999999998888864
No 358
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=64.61 E-value=26 Score=41.44 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=68.5
Q ss_pred CCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhh---hhc-cEEEEccCCCCCCCccCH
Q 000092 46 KPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHI---RIA-DQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 46 ~~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~v---r~A-De~v~vp~~~~~~~Y~dv 120 (2267)
.|+++|||.|. |.++..+++.+.+.|++++ +...+....+..+ ... -+.+.. ++.|.
T Consensus 9 ~m~~~ilVtGatG~iG~~l~~~L~~~g~~V~-----------~l~R~~~~~~~~~~~l~~~~v~~v~~-------Dl~d~ 70 (318)
T 2r6j_A 9 GMKSKILIFGGTGYIGNHMVKGSLKLGHPTY-----------VFTRPNSSKTTLLDEFQSLGAIIVKG-------ELDEH 70 (318)
T ss_dssp CCCCCEEEETTTSTTHHHHHHHHHHTTCCEE-----------EEECTTCSCHHHHHHHHHTTCEEEEC-------CTTCH
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHCCCcEE-----------EEECCCCchhhHHHHhhcCCCEEEEe-------cCCCH
Confidence 45678999995 9999999999999998875 2211211111111 111 123332 45667
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCC--CCchHHHHHHcC-Ce-Ee----CCC-------HHHHHHhcCHHHHHHHHHHcCC
Q 000092 121 QLIVEMAEMTRVDAVWPGWGHASE--IPELPDTLSTKG-II-FL----GPP-------ATSMAALGDKIGSSLIAQAANV 185 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~G~~sE--n~~la~~l~~~G-I~-fi----GPs-------~eam~~lgDK~~~k~laq~aGV 185 (2267)
+.+.++++ ++|+|+-..+.... ...+.+++.+.| +. |+ |.+ .........|......+++.|+
T Consensus 71 ~~l~~a~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~ 148 (318)
T 2r6j_A 71 EKLVELMK--KVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANI 148 (318)
T ss_dssp HHHHHHHT--TCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCCSSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc--CCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeeccccCcccccCCCCcchhHHHHHHHHHHHHhcCC
Confidence 77777665 57888765443211 112345555555 42 33 211 1112223678888888888887
Q ss_pred CC
Q 000092 186 PT 187 (2267)
Q Consensus 186 Pt 187 (2267)
++
T Consensus 149 ~~ 150 (318)
T 2r6j_A 149 PY 150 (318)
T ss_dssp CB
T ss_pred Ce
Confidence 64
No 359
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}
Probab=63.85 E-value=2.9 Score=52.55 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=34.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1779 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG 1779 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-
T Consensus 142 ~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe 179 (407)
T 3ju1_A 142 GKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPE 179 (407)
T ss_dssp SSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGG
T ss_pred CCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChH
Confidence 46999999999999999999999999999998766543
No 360
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}
Probab=63.54 E-value=21 Score=46.23 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhccc--CCcEEEEec-C-CCCCCchhh-hh--------hchHHHHHHHHHHH----hcCCCCE
Q 000092 1942 QVWFPDSATKTAQALMDFNRE--ELPLFILAN-W-RGFSGGQRD-LF--------EGILQAGSTIVENL----RTYKQPV 2004 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~--~lPLv~l~d-~-~Gf~~G~~~-e~--------~gilk~ga~iv~al----~~~~vP~ 2004 (2267)
.++++.......++++.+... .+=+|+|.- . +.|+.|..- +. ....+....++..+ ..+.+|+
T Consensus 53 NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPV 132 (556)
T 2w3p_A 53 NSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKF 132 (556)
T ss_dssp TEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 578889999999999887654 577777765 2 236655421 10 11123345567777 8999999
Q ss_pred EEEEccCCcCCc-hhHhhhccccCCccceeecccc--cEEEe
Q 000092 2005 FVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRT--AKGNV 2043 (2267)
Q Consensus 2005 i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~--A~~gv 2043 (2267)
|+.|- |-+.| |..+++.+ |+ ++|.++ +++|.
T Consensus 133 IAAVn--G~AlGGGleLALAC----D~--rIAse~~~A~Fgl 166 (556)
T 2w3p_A 133 LAAVN--GACAGGGYELALAC----DE--IYLVDDRSSSVSL 166 (556)
T ss_dssp EEEEC--SEEETHHHHHHHHS----SE--EEEECSSSCEEEC
T ss_pred EEEEC--CeechhhHHHHHhC----CE--EEEcCCCCcEEec
Confidence 99996 65555 55555554 77 888888 88776
No 361
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=62.88 E-value=9.1 Score=45.13 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=60.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h-h-------chHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F-E-------GILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~-~-------gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.++......++++.+.+ ..+=+|+|.-.+ .|+.|..-. . . ..... ..++..+..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAav~- 106 (265)
T 3qxz_A 29 NSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSA-SPVQPAAFELRTPVIAAVN- 106 (265)
T ss_dssp SCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCS-CCSSSCGGGSSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHH-HHHHHHHHhCCCCEEEEEC-
Confidence 57889999999999998875 456677775443 355553210 0 0 00011 3345667888999999996
Q ss_pred CCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ .+++. .|+ ++|.++++++.
T Consensus 107 -G~a~GgG~~lala----cD~--~ia~~~a~f~~ 133 (265)
T 3qxz_A 107 -GHAIGIGMTLALH----ADI--RILAEEGRYAI 133 (265)
T ss_dssp -SEEETHHHHHHTT----SSE--EEEETTCCEEC
T ss_pred -CEEehHhHHHHHH----CCE--EEEcCCCEEEC
Confidence 6666654 44444 477 88888888875
No 362
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=62.06 E-value=8.1 Score=43.49 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=34.0
Q ss_pred ceEEEEEcCcccchhhhhhccCCe--EEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~--~I~~~~a~i~ltGp 1780 (2267)
.|+++++.|.|..+|+|++.-||. ++|.+++.+++..|
T Consensus 85 ~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p 124 (193)
T 1yg6_A 85 PDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQP 124 (193)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCC
T ss_pred CCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEec
Confidence 488889999999999999999998 89999998887765
No 363
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=60.71 E-value=1.8 Score=54.77 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=0.0
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
+.++...-...|.||..|+|.+++|++||.|..||+|++|+..
T Consensus 37 ~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 37 CEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp -------------------------------------------
T ss_pred EEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 3344444456799999999999999999999999999999853
No 364
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=60.63 E-value=27 Score=38.97 Aligned_cols=73 Identities=11% Similarity=0.215 Sum_probs=45.9
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.|+||||.| .|.++..+++.+.+.|++++ ++..+... ... ..+..-.+.+ +..|.+.+.+
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~-~~~--~~~~~~~~~~-----Dl~d~~~~~~ 63 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVT-----------AVVRHPEK-IKI--ENEHLKVKKA-----DVSSLDEVCE 63 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEE-----------EECSCGGG-CCC--CCTTEEEECC-----CTTCHHHHHH
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEE-----------EEEcCccc-chh--ccCceEEEEe-----cCCCHHHHHH
Confidence 468999999 59999999999999998875 22111111 000 1122222222 4567788877
Q ss_pred HHHHcCCCEEEeCCC
Q 000092 126 MAEMTRVDAVWPGWG 140 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G 140 (2267)
+++ ++|+|+-.-|
T Consensus 64 ~~~--~~d~vi~~a~ 76 (227)
T 3dhn_A 64 VCK--GADAVISAFN 76 (227)
T ss_dssp HHT--TCSEEEECCC
T ss_pred Hhc--CCCEEEEeCc
Confidence 776 5899885543
No 365
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=60.00 E-value=20 Score=42.13 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=64.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--------h------chHHHHHHHHHHHhcCCCCEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------E------GILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--------~------gilk~ga~iv~al~~~~vP~i 2005 (2267)
..+.++......++++.+.. ..+-+|+|.-.+ .|+.|..-.. . ...+....++..+..+.+|+|
T Consensus 33 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 112 (267)
T 3oc7_A 33 NALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVI 112 (267)
T ss_dssp SCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 67899999999999998876 457777775443 3555532100 0 123455677888999999999
Q ss_pred EEEccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |.+.| |..+++.+ |+ ++|.++++++.
T Consensus 113 Aav~--G~a~GgG~~lalac----D~--~ia~~~a~f~~ 143 (267)
T 3oc7_A 113 AAID--GHVRAGGFGLVGAC----DI--AVAGPRSSFAL 143 (267)
T ss_dssp EEEC--SEEETTHHHHHHHS----SE--EEECTTCEEEC
T ss_pred EEEc--CeecccchHHHHHC----CE--EEEcCCCEEeC
Confidence 9997 66665 44445544 77 88888888875
No 366
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=59.98 E-value=5.5 Score=49.04 Aligned_cols=63 Identities=10% Similarity=-0.028 Sum_probs=48.6
Q ss_pred eecCCCceeEE--EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCC
Q 000092 690 LVAETPCKLLR--YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 690 l~APmPG~vv~--~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~~ 758 (2267)
|++|..|-+.. ..++.|+.|++||+|+.+-- .+++||.+|.+... . .-.|.+|+.++.+-...
T Consensus 266 v~a~~~g~~~~~~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~-p-~p~V~~G~~~~~i~~~~ 330 (350)
T 2bco_A 266 IVRLHDDFDFMFDDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF-P-NRHVAIGQRAALMVCEV 330 (350)
T ss_dssp EECCSSSEEESSCTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES-C-CTTCCTTSEEEEEEEEC
T ss_pred EEcCCCCeEEeccccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe-c-CCCCCCCcEEEEEEEEc
Confidence 56777774431 44789999999999999953 78999999975542 3 78899999888876554
No 367
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=58.70 E-value=11 Score=42.88 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=33.7
Q ss_pred ceEEEEEcCcccchhhhhhccCC--eEEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGM--RCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd--~~I~~~~a~i~ltGp 1780 (2267)
.|+++++.|.|.++|++++..|| .++|.+++.+++.-|
T Consensus 86 ~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP 125 (203)
T 3qwd_A 86 PDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQP 125 (203)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC
T ss_pred CCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecc
Confidence 48889999999999999999999 689999999887765
No 368
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}
Probab=58.42 E-value=5.1 Score=51.67 Aligned_cols=85 Identities=15% Similarity=-0.014 Sum_probs=53.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC--Ccceecc------------hHHHH--HhhccccccccccCCcccc--
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD--QPIILTG------------FSALN--KLLGREVYSSHMQLGGPKI-- 1803 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~--a~i~ltG------------p~al~--~~lG~evy~s~~~lGG~~i-- 1803 (2267)
..|+|+.|.|.|+|||..++..||++|+.++ +.+.+.- ..-+- +.+|.... ...-+.|-.+
T Consensus 129 pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA-~eLlLTGr~isA 207 (556)
T 2w3p_A 129 GLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRA-DIFCTVVEGVRG 207 (556)
T ss_dssp SCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHH-HHHTTCSSCEEH
T ss_pred CCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhhccCCHHHH-HHHHHcCCCCCH
Confidence 4699999999999999999999999999998 5543311 12233 34443220 0011222222
Q ss_pred --ccccCceEEEecCcHHHHHHHHHHH
Q 000092 1804 --MATNGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1804 --~~~nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
...-|++|.+++ +.+..+.+.+|.
T Consensus 208 ~EAl~lGLVdeVVp-~~eL~~~A~~lA 233 (556)
T 2w3p_A 208 ERAKAWRLVDEVVK-PNQFDQAIQARA 233 (556)
T ss_dssp HHHHHTTSCSEEEC-HHHHHHHHHHHH
T ss_pred HHHHHCCCceEEeC-hhHHHHHHHHHH
Confidence 246999999996 344444444443
No 369
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=58.31 E-value=6.3 Score=48.53 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=35.8
Q ss_pred EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEE----------e--------------------eCCCCccCCCCE
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQF----------K--------------------MAEGQAMQAGEL 750 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~----------i--------------------~~~G~~v~~G~~ 750 (2267)
++|++|+.|++||.||+=. +|.|..+|+|.. + ++.|+.|.+|++
T Consensus 63 l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~v 136 (352)
T 2xhc_A 63 LHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGLP 136 (352)
T ss_dssp ESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTCB
T ss_pred EEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCcE
Confidence 5789999999999999966 777777776631 1 456888888888
Q ss_pred EE
Q 000092 751 IA 752 (2267)
Q Consensus 751 La 752 (2267)
||
T Consensus 137 la 138 (352)
T 2xhc_A 137 LS 138 (352)
T ss_dssp SB
T ss_pred Ee
Confidence 87
No 370
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=56.60 E-value=1.2e+02 Score=35.65 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=57.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhhhhchH----HHHHHH-HHHHhcCCCCEEEEEccCCcC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLFEGIL----QAGSTI-VENLRTYKQPVFVYIPMMAEL 2014 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e~~gil----k~ga~i-v~al~~~~vP~i~vI~~~g~~ 2014 (2267)
..+..+......++++.+.. ..+-+|+|.-. +.|+.|..-..-... .....+ +..+.. .+|+|+.|- |.+
T Consensus 37 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~-~kPvIAav~--G~a 113 (265)
T 3qxi_A 37 NSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFTERPP-AKPLIAAVE--GYA 113 (265)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETTTEETTTTSCC-SSCEEEEEC--SEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhhhhhhHHHhhC-CCCEEEEEC--Cce
Confidence 67899999999999998865 46777777544 347776531110000 000001 222222 689999996 666
Q ss_pred Cchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2015 RGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2015 ~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
.||+ .+++. .|+ ++|.++++++.-+
T Consensus 114 ~GgG~~lala----cD~--ria~~~a~f~~pe 139 (265)
T 3qxi_A 114 LAGGTELALA----TDL--IVAARDSAFGIPE 139 (265)
T ss_dssp ETHHHHHHHH----SSE--EEEETTCEEECGG
T ss_pred eHHHHHHHHh----CCE--EEEcCCCEEECcc
Confidence 6654 44444 477 8888888887533
No 371
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=54.32 E-value=7 Score=44.82 Aligned_cols=108 Identities=9% Similarity=0.097 Sum_probs=61.7
Q ss_pred hhhhcccccCCCCCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCccccccccee
Q 000092 3 EAQRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAIL 82 (2267)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~ 82 (2267)
.+|=|+.++-++. +|+..-+ -....+.+++++.=|....++++|.|.|.++..+++... . .+.+++
T Consensus 46 ~~qiRkDls~fg~-~G~~g~G------Y~V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aLa~~~~---~----~~~g~~ 111 (212)
T 3keo_A 46 SATVRRDFSYFGE-LGRRGFG------YDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRF---H----DRNKMQ 111 (212)
T ss_dssp HHHHHHHHHTTGG-GTTTSSS------EEHHHHHHHHHHHTTTTSCEEEEEECCSHHHHHHTTCCC---C----TTSSEE
T ss_pred HHHHHHHHHHHhh-cCCCCCC------EEHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHhhh---c----ccCCeE
Confidence 4565666655542 4543111 245677788888777777889999999999988877631 1 122445
Q ss_pred EEEEEeccCCCCC-Chhh-hhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeC
Q 000092 83 LVAMATPEDMRIN-AEHI-RIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPG 138 (2267)
Q Consensus 83 ~v~~~t~~D~~~~-a~~v-r~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG 138 (2267)
.|++.. .++. .... .... +.+ | ..+.+.++++++++|.++-.
T Consensus 112 iVg~~D---~dp~~kiG~~~i~G--vpV--------~-~~~dL~~~v~~~~Id~vIIA 155 (212)
T 3keo_A 112 ISMAFD---LDSNDLVGKTTEDG--IPV--------Y-GISTINDHLIDSDIETAILT 155 (212)
T ss_dssp EEEEEE---CTTSTTTTCBCTTC--CBE--------E-EGGGHHHHC-CCSCCEEEEC
T ss_pred EEEEEe---CCchhccCceeECC--eEE--------e-CHHHHHHHHHHcCCCEEEEe
Confidence 555543 2222 2111 1111 111 1 24667888888889887733
No 372
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=54.01 E-value=41 Score=36.58 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=24.4
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000092 49 HSILIANN-GMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~lG~~v~ 75 (2267)
++|||.|. |.++..+++.+.+.|++++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~ 31 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVT 31 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEE
Confidence 58999996 9999999999999998875
No 373
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=53.76 E-value=24 Score=39.48 Aligned_cols=30 Identities=13% Similarity=-0.009 Sum_probs=26.0
Q ss_pred CCccEEEEEC-chHHHHHHHHHHH-HcCCccc
Q 000092 46 KPIHSILIAN-NGMAAVKFIRSIR-TWAYETF 75 (2267)
Q Consensus 46 ~~~kkVLIan-~G~~Av~iIrsaR-~lG~~v~ 75 (2267)
.|+|+|||.| .|.++..+++.+. +.|++++
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~ 34 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHIT 34 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEE
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEE
Confidence 4678899999 5899999999999 8998875
No 374
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=53.24 E-value=56 Score=38.38 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=58.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-hhch----H--HHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FEGI----L--QAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~~gi----l--k~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..+.++......++++.+.+ ..+=+|+|.-. +.|+.|..-. .... . .....+...+..+.+|+|+.|- |
T Consensus 33 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~--G 110 (262)
T 3r9q_A 33 NAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSKPVIAAIS--G 110 (262)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSSCEEEEEC--S
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCCCEEEEEC--C
Confidence 67889999999999998875 45667777543 3366664211 0000 0 0001122334577899999996 6
Q ss_pred cCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-+.|| ..+++. .|+ ++|.++++++.
T Consensus 111 ~a~GgG~~lala----cD~--ria~~~a~f~~ 136 (262)
T 3r9q_A 111 HAVAGGIELALW----CDL--RVVEEDAVLGV 136 (262)
T ss_dssp EEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred eeehhhhHHHHh----CCE--EEEeCCCEEec
Confidence 66664 444554 477 88999988875
No 375
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=53.21 E-value=9.3 Score=39.40 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=25.4
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
+++|+|+|.|..+..+++.+++.|++++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~ 33 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVL 33 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 4679999999999999999999998875
No 376
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=53.09 E-value=7.1 Score=40.83 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=25.8
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
+++|+|+|.|..+..+++.+.+.|++++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~ 33 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVL 33 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 5789999999999999999999999875
No 377
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=52.50 E-value=87 Score=36.57 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=58.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhhhhc----hHHHHHHHHHHHhcCCCCEEEEEccCCcCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLFEG----ILQAGSTIVENLRTYKQPVFVYIPMMAELR 2015 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e~~g----ilk~ga~iv~al~~~~vP~i~vI~~~g~~~ 2015 (2267)
..+.++......++++.+.+ ..+-+|+|.-. +.|+.|..-..-. ........+..+ .+.+|+|+.|- |.+.
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~--G~a~ 105 (256)
T 3trr_A 29 NAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTNV-PPRKPIIAAVE--GFAL 105 (256)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEETTSSS-CCSSCEEEEEC--SBCC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhhhHHHh-cCCCCEEEEEC--Ceee
Confidence 67889999999999998876 46777777554 3477775311000 000000012223 67789999997 6666
Q ss_pred chh-HhhhccccCCccceeecccccEEEe
Q 000092 2016 GGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2016 GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
||+ .+++. .|+ ++|.++++++.
T Consensus 106 GgG~~lala----cD~--~ia~~~a~f~~ 128 (256)
T 3trr_A 106 AGGTELVLS----CDL--VVAGRSAKFGI 128 (256)
T ss_dssp THHHHHHHT----SSE--EEEETTCEECC
T ss_pred echhHHHHh----CCE--EEECCCCEEEe
Confidence 654 44444 477 88888888765
No 378
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=52.24 E-value=26 Score=41.09 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=46.4
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHc--CCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHH
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTW--AYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~l--G~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il 124 (2267)
.++|||.|. |.++..+++.+.+. |++++ ++ +..........--+++.. +..|.+.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~-----------~~--~r~~~~~~~~~~~~~~~~-------D~~d~~~~~ 61 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVI-----------AS--DIRKLNTDVVNSGPFEVV-------NALDFNQIE 61 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEE-----------EE--ESCCCSCHHHHSSCEEEC-------CTTCHHHHH
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEE-----------EE--cCCCccccccCCCceEEe-------cCCCHHHHH
Confidence 468999996 99999999999998 88875 22 111111111111123333 456778888
Q ss_pred HHHHHcCCCEEEeC
Q 000092 125 EMAEMTRVDAVWPG 138 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG 138 (2267)
++.++.++|+|+-.
T Consensus 62 ~~~~~~~~d~vih~ 75 (312)
T 2yy7_A 62 HLVEVHKITDIYLM 75 (312)
T ss_dssp HHHHHTTCCEEEEC
T ss_pred HHHhhcCCCEEEEC
Confidence 88888889998844
No 379
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=51.88 E-value=15 Score=41.76 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=33.2
Q ss_pred ceEEEEEcCcccchhhhhhccCCe--EEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~--~I~~~~a~i~ltGp 1780 (2267)
.|+.+++.|.+.++|++++.-||. .+|.+++.|++.-|
T Consensus 89 ~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p 128 (201)
T 3p2l_A 89 PDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQP 128 (201)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCC
T ss_pred CCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEecc
Confidence 378888999999999999999998 89999998877665
No 380
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=51.60 E-value=27 Score=41.21 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-hh--------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LF--------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e~--------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..- +. ....+....++..+..+..|+|+.|-
T Consensus 34 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 113 (272)
T 1hzd_A 34 NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAID 113 (272)
T ss_dssp TCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 57888888999999988865 467777776543 36665421 10 11123345677889999999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|-+.||+ .+++. .|+ .+|.+++++|.-+
T Consensus 114 --G~a~GgG~~lala----cD~--ria~~~a~f~~pe 142 (272)
T 1hzd_A 114 --GLALGGGLELALA----CDI--RVAASSAKMGLVE 142 (272)
T ss_dssp --EEEETHHHHHHHH----SSE--EEEETTCEEECCG
T ss_pred --ceEEecHHHHHHh----CCE--EEEcCCCEEeCch
Confidence 6666654 44444 477 8888888887643
No 381
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=51.29 E-value=42 Score=39.50 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=25.5
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCccc
Q 000092 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan-~G~~Av~iIrsaR~lG~~v~ 75 (2267)
|++||||.| +|.++..+++.+.+.|++|+
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 30 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPI 30 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEE
Confidence 568999999 59999999999999999875
No 382
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=50.57 E-value=22 Score=36.37 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
.+|+|+|.|..+..+++.+.+.|++++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~ 31 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIV 31 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 379999999999999999999998775
No 383
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=50.48 E-value=7 Score=48.11 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=33.1
Q ss_pred ccCCCEEcCCCcEEEEEccccceeeecCCCcEEE----------------------------Ee-eCCCCccCCCCEEE
Q 000092 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ----------------------------FK-MAEGQAMQAGELIA 752 (2267)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~----------------------------~i-~~~G~~v~~G~~La 752 (2267)
|++|+.|++||+|+ =...+.|..+|+|. ++ +++||.|++|+.|.
T Consensus 125 v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~~G~~l~ 197 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 197 (352)
T ss_dssp CCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred cCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEeCCCCcc
Confidence 89999999999888 24555566666554 12 66889999999987
No 384
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=50.17 E-value=6.5 Score=42.08 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=36.6
Q ss_pred cCceeecccCCCCCceecCCCceeEEE---EccCCCEEc---CCC-cEEEEEc
Q 000092 675 DGRTCLLQNDHDPSKLVAETPCKLLRY---LVSDGSHID---ADT-PYAEVEV 720 (2267)
Q Consensus 675 ~g~t~~~~~~~d~~~l~APmPG~vv~~---~V~~Gd~V~---~G~-~l~~iEa 720 (2267)
+..-+.++...-.+.|.||..|+|+++ ++++|+.|+ .|+ .|+.|+.
T Consensus 62 Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 62 GEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEI 114 (136)
T ss_dssp TCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEE
T ss_pred CCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEE
Confidence 333444554455678999999999999 899999999 888 8999883
No 385
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=49.98 E-value=32 Score=40.29 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=66.2
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCC--Chhhh----h-ccEEEEccCCCCCCCccC
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRIN--AEHIR----I-ADQFVEVPGGTNNNNYAN 119 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~--a~~vr----~-ADe~v~vp~~~~~~~Y~d 119 (2267)
+++|||.|. |.++..+++.+.+.|++++ +...+.... ....+ + ....-.+.+ ++.|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~-----------~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~-----D~~d 67 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTF-----------LLVRESTASSNSEKAQLLESFKASGANIVHG-----SIDD 67 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEE-----------EECCCCCTTTTHHHHHHHHHHHTTTCEEECC-----CTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEE-----------EEECCcccccCHHHHHHHHHHHhCCCEEEEe-----ccCC
Confidence 578999996 9999999999999998875 221111110 00000 0 111111211 4566
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCC--CCCchHHHHHHcC-Ce-Ee----CC--------CHHHHHHhcCHHHHHHHHHHc
Q 000092 120 VQLIVEMAEMTRVDAVWPGWGHAS--EIPELPDTLSTKG-II-FL----GP--------PATSMAALGDKIGSSLIAQAA 183 (2267)
Q Consensus 120 vd~Il~iA~~~~vDaV~pG~G~~s--En~~la~~l~~~G-I~-fi----GP--------s~eam~~lgDK~~~k~laq~a 183 (2267)
.+.+.++.+ ++|+|+-.-+... ....+.+++.+.| +. |+ |. .+. ......|......+++.
T Consensus 68 ~~~l~~~~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~-~~~y~sK~~~e~~~~~~ 144 (308)
T 1qyc_A 68 HASLVEAVK--NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPA-KSVFEVKAKVRRAIEAE 144 (308)
T ss_dssp HHHHHHHHH--TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeecccccCccccccCCcc-hhHHHHHHHHHHHHHhc
Confidence 777776665 5788875544321 1122345566665 42 32 20 011 11225688888888888
Q ss_pred CCCC
Q 000092 184 NVPT 187 (2267)
Q Consensus 184 GVPt 187 (2267)
|++.
T Consensus 145 ~~~~ 148 (308)
T 1qyc_A 145 GIPY 148 (308)
T ss_dssp TCCB
T ss_pred CCCe
Confidence 8764
No 386
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=49.62 E-value=3.5 Score=47.87 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCCceecCCCceeEEEEccCCCE-EcCCCcEEEEEc
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSH-IDADTPYAEVEV 720 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~-V~~G~~l~~iEa 720 (2267)
+.-...|.||..|+|.+++|++||. |..|++|++|+.
T Consensus 43 dK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 43 DKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------
T ss_pred CCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 3334678999999999999999997 999999999973
No 387
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=49.33 E-value=49 Score=38.79 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=24.7
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG~~v~ 75 (2267)
+++|||.|. |.++..+++.+.+.|++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~ 32 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTY 32 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEE
Confidence 568999995 9999999999999998875
No 388
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=48.71 E-value=6.5 Score=41.43 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=27.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
.+.++|+|+|.|..+..+.+.+++.|++++
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~ 34 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLV 34 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEE
Confidence 456789999999999999999999999875
No 389
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=46.80 E-value=21 Score=42.52 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=34.0
Q ss_pred ceEEEEEcCcccchhhhhhccCCe--EEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~--~I~~~~a~i~ltGp 1780 (2267)
.|+++++.|.+..+|+|++.-||. ++|.+++.|++..|
T Consensus 141 ~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP 180 (277)
T 1tg6_A 141 NPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP 180 (277)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCC
T ss_pred CCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecc
Confidence 388888899999999999999998 89999999888776
No 390
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=46.73 E-value=15 Score=45.22 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=71.0
Q ss_pred CCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHH
Q 000092 44 GKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 44 g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~I 123 (2267)
|++| ||||+|.|..+..+++.+.+. +++. ++.- +. .....++.--..+.+ +..|.+.+
T Consensus 14 g~~m--kilvlGaG~vG~~~~~~L~~~-~~v~----------~~~~-~~-~~~~~~~~~~~~~~~-------d~~d~~~l 71 (365)
T 3abi_A 14 GRHM--KVLILGAGNIGRAIAWDLKDE-FDVY----------IGDV-NN-ENLEKVKEFATPLKV-------DASNFDKL 71 (365)
T ss_dssp --CC--EEEEECCSHHHHHHHHHHTTT-SEEE----------EEES-CH-HHHHHHTTTSEEEEC-------CTTCHHHH
T ss_pred CCcc--EEEEECCCHHHHHHHHHHhcC-CCeE----------EEEc-CH-HHHHHHhccCCcEEE-------ecCCHHHH
Confidence 4454 799999999999888888653 3332 2221 10 111111111123444 23567888
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCC
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~ 192 (2267)
.++++ ++|+|+...+.. -+..++++|.+.|..++-.+...- .=......++++|+...+-.+
T Consensus 72 ~~~~~--~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s~~~~----~~~~l~~~a~~~g~~~i~~~G 133 (365)
T 3abi_A 72 VEVMK--EFELVIGALPGF-LGFKSIKAAIKSKVDMVDVSFMPE----NPLELRDEAEKAQVTIVFDAG 133 (365)
T ss_dssp HHHHT--TCSEEEECCCGG-GHHHHHHHHHHHTCEEEECCCCSS----CGGGGHHHHHHTTCEEECCCB
T ss_pred HHHHh--CCCEEEEecCCc-ccchHHHHHHhcCcceEeeeccch----hhhhhhhhhccCCceeeecCC
Confidence 88876 469998765533 345688999999998875442210 111235678899999888655
No 391
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=46.29 E-value=21 Score=47.22 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=65.2
Q ss_pred chHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHH
Q 000092 147 ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASC 226 (2267)
Q Consensus 147 ~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a 226 (2267)
.+.+.+++.++.++.|....+ ++||..+..+.+-+ |--|+.. + +.++...++
T Consensus 474 ~ll~~l~~~~v~iieP~~~~l--lsNKailalLw~l~--p~hp~LL---------------p-----T~f~~~~~l---- 525 (619)
T 2io8_A 474 RLIDVLLRPEVLVFEPLWTVI--PGNKAILPILWSLF--PHHRYLL---------------D-----TDFTVNDEL---- 525 (619)
T ss_dssp CHHHHHTCTTCEEESCGGGGT--TTSTTHHHHHHHHS--TTCTTCC---------------C-----EESSCCHHH----
T ss_pred HHHHHHHhCCCEEECHHHHHH--hhhHHHHHHHHHhC--CCCCCCC---------------C-----eeecCCccc----
Confidence 688888888999998888866 99999999999976 3222221 0 001111121
Q ss_pred hhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000092 227 QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2267)
Q Consensus 227 ~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~ 280 (2267)
..- ..|+||..|..|.||.+++..++. .+.........+.+.|+|++-+
T Consensus 526 ~~~--~yV~KPi~gReG~nV~i~~~~~~~---~~~~~~~y~~~~~IyQe~~~lp 574 (619)
T 2io8_A 526 VKT--GYAVKPIAGRCGSNIDLVSHHEEV---LDKTSGKFAEQKNIYQQLWCLP 574 (619)
T ss_dssp HHH--CEEEEETTCCTTTTCEEECTTSCE---EEECCCTTTTSCEEEEECCCCC
T ss_pred ccC--CEEEccCCCCCCCCEEEEeCCChh---HhhccccccCCCeEEEEecCCC
Confidence 122 489999999999999999762221 0111111223578889999754
No 392
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=46.17 E-value=24 Score=40.92 Aligned_cols=58 Identities=10% Similarity=0.229 Sum_probs=44.0
Q ss_pred cc-EEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 48 IH-SILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 48 ~k-kVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
|+ ||||.|. |.++..+++.+.+.|++|+ ++ +. .+ -+..|.+.+.+
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~-----------~~--~r---------------~~-----~D~~d~~~~~~ 50 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIY-----------PF--DK---------------KL-----LDITNISQVQQ 50 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEE-----------EE--CT---------------TT-----SCTTCHHHHHH
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEE-----------Ee--cc---------------cc-----cCCCCHHHHHH
Confidence 45 9999995 9999999999999998875 33 21 11 14567888888
Q ss_pred HHHHcCCCEEEeC
Q 000092 126 MAEMTRVDAVWPG 138 (2267)
Q Consensus 126 iA~~~~vDaV~pG 138 (2267)
+.+..++|+|+-.
T Consensus 51 ~~~~~~~d~vi~~ 63 (287)
T 3sc6_A 51 VVQEIRPHIIIHC 63 (287)
T ss_dssp HHHHHCCSEEEEC
T ss_pred HHHhcCCCEEEEC
Confidence 8888899999854
No 393
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=46.16 E-value=17 Score=46.35 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhhhCCcEEEeecCCCCCcCeEE--ECCHHHHHHHHHHHHhhCCCCcEEEEEeccc
Q 000092 217 YTTEEAIASCQVVGYPAMIKASWGGGGKGIRK--VHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279 (2267)
Q Consensus 217 ~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~--V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g 279 (2267)
...++.....+... -+||||+.|.||+|+.+ --+.++.++..+++... ...+++|++++-
T Consensus 350 ~~~~~~~~vl~~l~-~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~--p~~yIaQe~v~l 411 (474)
T 3n6x_A 350 SKADDLKYVLDNLA-ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILAN--PANYIAQPTLAL 411 (474)
T ss_dssp TSHHHHHHHHHSGG-GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHS--GGGEEEEECCCC
T ss_pred CCHHHHHHHHhchh-heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhC--CCCEEEeeccCC
Confidence 45666666665554 68999999999999987 35678888877777642 124999999954
No 394
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=45.89 E-value=25 Score=39.86 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.4
Q ss_pred CCccEEEEEC-chHHHHHHHHHHHHcC-Cccc
Q 000092 46 KPIHSILIAN-NGMAAVKFIRSIRTWA-YETF 75 (2267)
Q Consensus 46 ~~~kkVLIan-~G~~Av~iIrsaR~lG-~~v~ 75 (2267)
.+|++|||.| .|.++..+++.+.+.| ++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~ 52 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQT 52 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEE
Confidence 4578999999 5999999999999998 6664
No 395
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=44.75 E-value=12 Score=50.47 Aligned_cols=87 Identities=17% Similarity=0.078 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|.... -+...+.+. =...
T Consensus 103 ~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~-eA~~ 181 (715)
T 1wdk_A 103 NVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAE-DALK 181 (715)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHH-HHHH
T ss_pred CCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHH
Confidence 4699999999999999999999999999998764332 22334444553220 111111111 1346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.++++ .+..+.+++|..-
T Consensus 182 ~GLv~~vv~~-~~l~~~a~~~a~~ 204 (715)
T 1wdk_A 182 VSAVDAVVTA-DKLGAAALDLIKR 204 (715)
T ss_dssp TTSSSEEECG-GGHHHHHHHHHHH
T ss_pred CCCceEEeCh-HHHHHHHHHHHHH
Confidence 8999999964 3445555555443
No 396
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=44.66 E-value=14 Score=44.96 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=30.0
Q ss_pred ceeeecCCCcEEEEeeCCCCccCCCCEEEEEecC
Q 000092 724 CMPLLSPASGVLQFKMAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 724 ~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~ 757 (2267)
...|+||.+|.+...++.|+.|++||+|++|...
T Consensus 257 ~~~v~A~~~Gl~~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 257 DCYLFSEHDGLFEIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp CCCEECSSCEEEEESSCTTCEECTTCEEEEEECS
T ss_pred cEEEeCCCCeEEEEcCCCCCEEcCCCEEEEEEcC
Confidence 3457999999998889999999999999999853
No 397
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=44.16 E-value=41 Score=39.81 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=45.2
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 48 ~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|+||||.| +|.++..+++.+.+.|++++ ++..........+.---+++.. +..|.+.+.++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~ 62 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVV-----------VVDNLQTGHEDAITEGAKFYNG-------DLRDKAFLRDV 62 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EEECCSSCCGGGSCTTSEEEEC-------CTTCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEE-----------EEeCCCcCchhhcCCCcEEEEC-------CCCCHHHHHHH
Confidence 46899998 49999999999999998875 2211111111111000123332 44567778888
Q ss_pred HHHcCCCEEEeC
Q 000092 127 AEMTRVDAVWPG 138 (2267)
Q Consensus 127 A~~~~vDaV~pG 138 (2267)
.++.++|+|+-.
T Consensus 63 ~~~~~~d~vih~ 74 (330)
T 2c20_A 63 FTQENIEAVMHF 74 (330)
T ss_dssp HHHSCEEEEEEC
T ss_pred HhhcCCCEEEEC
Confidence 777789998854
No 398
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=43.91 E-value=62 Score=36.99 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=51.4
Q ss_pred ccEEEEE--CchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccE----EEEccCCCCCCCccC--
Q 000092 48 IHSILIA--NNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ----FVEVPGGTNNNNYAN-- 119 (2267)
Q Consensus 48 ~kkVLIa--n~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe----~v~vp~~~~~~~Y~d-- 119 (2267)
|+||+|+ |+|..+..+++++.+-++. ++.++|++.. +++.....|.+ ++.++. .+|.+
T Consensus 1 m~rI~vl~SG~g~~~~~~l~~l~~~~~~-------~~i~~Vvs~~---~~~~~~~~A~~~gIp~~~~~~----~~~~~r~ 66 (216)
T 2ywr_A 1 MLKIGVLVSGRGSNLQAIIDAIESGKVN-------ASIELVISDN---PKAYAIERCKKHNVECKVIQR----KEFPSKK 66 (216)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTTSSC-------EEEEEEEESC---TTCHHHHHHHHHTCCEEECCG----GGSSSHH
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHhCCCC-------CeEEEEEeCC---CChHHHHHHHHcCCCEEEeCc----ccccchh
Confidence 3688888 9999999999999876541 2445667733 23445555554 333322 23333
Q ss_pred --HHHHHHHHHHcCCCEEE-eCCCc
Q 000092 120 --VQLIVEMAEMTRVDAVW-PGWGH 141 (2267)
Q Consensus 120 --vd~Il~iA~~~~vDaV~-pG~G~ 141 (2267)
-+.+++..++.++|.|+ .||+.
T Consensus 67 ~~~~~~~~~l~~~~~Dliv~a~y~~ 91 (216)
T 2ywr_A 67 EFEERMALELKKKGVELVVLAGFMR 91 (216)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred hhhHHHHHHHHhcCCCEEEEeCchh
Confidence 35688889999999766 45553
No 399
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=43.35 E-value=60 Score=43.71 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=60.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-hh-----------hchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-----------EGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e~-----------~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
.+++++......++++.+.. ..+=.|+|.--+ .|..|..- +. ....+....++..+..+..|+|+.
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 108 (725)
T 2wtb_A 29 NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAA 108 (725)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCTTCCEEEEEESSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEE
Confidence 47888889999999988865 467778887632 37766421 11 111122333445566778999999
Q ss_pred EccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.| |.-+++.+ |+ .+|.+++++|.
T Consensus 109 v~--G~a~GgG~elalac----D~--ria~~~a~fgl 137 (725)
T 2wtb_A 109 ID--GLALGGGLELAMAC----HA--RISAPAAQLGL 137 (725)
T ss_dssp EC--SEEETHHHHHHHHS----SE--EEECTTCEEEC
T ss_pred EC--CccCcccHHHHHhC----CE--EEEcCCCEEeC
Confidence 96 65555 44455554 66 78888888765
No 400
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=43.06 E-value=28 Score=44.71 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.5
Q ss_pred CccEEEEECchHHHHH-HHHHHHHcCCccc
Q 000092 47 PIHSILIANNGMAAVK-FIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~-iIrsaR~lG~~v~ 75 (2267)
.++||+|+|-|.+++. +.+.++++|++|.
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~ 50 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQIS 50 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEE
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEE
Confidence 4689999999988885 7999999999987
No 401
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=42.96 E-value=51 Score=34.98 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=25.4
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
-++|+|+|.|..+..+++.+++.|++++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~ 46 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVV 46 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 4689999999999999999999998765
No 402
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=42.50 E-value=72 Score=37.86 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=48.7
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh-----ccEEEEccCCCCCCCccCH
Q 000092 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI-----ADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 47 ~~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~-----ADe~v~vp~~~~~~~Y~dv 120 (2267)
+.++|||.| +|.++..+++.+.+.|++|+ ++..+.......... ......+.. +..|.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~-----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----Dl~d~ 67 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVV-----------IADNLVNSKREAIARIEKITGKTPAFHET-----DVSDE 67 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EECCCSSSCTHHHHHHHHHHSCCCEEECC-----CTTCH
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEE-----------EEecCCcchHHHHHHHHhhcCCCceEEEe-----ecCCH
Confidence 446899999 48999999999999999885 332222222222111 112222221 45678
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 000092 121 QLIVEMAEMTRVDAVWPG 138 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG 138 (2267)
+.+.++++..++|.|+-.
T Consensus 68 ~~~~~~~~~~~~d~vih~ 85 (341)
T 3enk_A 68 RALARIFDAHPITAAIHF 85 (341)
T ss_dssp HHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHhccCCcEEEEC
Confidence 888888888889998844
No 403
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=42.23 E-value=14 Score=42.58 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=24.9
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
++|||+|+|..|.+.++.+-+.|..++
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~Vt 58 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAIT 58 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 689999999999999999999998774
No 404
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=41.44 E-value=94 Score=36.98 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=47.2
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh-c--cEEEEccCCCCCCCccCHHHH
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI-A--DQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~-A--De~v~vp~~~~~~~Y~dvd~I 123 (2267)
++||||.|+ |.++..+++.+.+.|+.+. .+++.. .........+.. . .....+.+ +..|.+.+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~-------v~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-----Dl~d~~~~ 90 (346)
T 4egb_A 24 AMNILVTGGAGFIGSNFVHYMLQSYETYK-------IINFDA-LTYSGNLNNVKSIQDHPNYYFVKG-----EIQNGELL 90 (346)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCTTEE-------EEEEEC-CCTTCCGGGGTTTTTCTTEEEEEC-----CTTCHHHH
T ss_pred CCeEEEECCccHHHHHHHHHHHhhCCCcE-------EEEEec-cccccchhhhhhhccCCCeEEEEc-----CCCCHHHH
Confidence 468999996 9999999999999984321 122211 111111111111 0 11222221 55678889
Q ss_pred HHHHHHcCCCEEEeCCC
Q 000092 124 VEMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G 140 (2267)
.++++..++|+|+-.-+
T Consensus 91 ~~~~~~~~~d~Vih~A~ 107 (346)
T 4egb_A 91 EHVIKERDVQVIVNFAA 107 (346)
T ss_dssp HHHHHHHTCCEEEECCC
T ss_pred HHHHhhcCCCEEEECCc
Confidence 99998888999985433
No 405
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=41.39 E-value=1.1e+02 Score=36.08 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=66.9
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCC-CCCCh-hhh----h-cc--EEEEccCCCCCCC
Q 000092 47 PIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDM-RINAE-HIR----I-AD--QFVEVPGGTNNNN 116 (2267)
Q Consensus 47 ~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~-~~~a~-~vr----~-AD--e~v~vp~~~~~~~ 116 (2267)
++++|||.|. |.++..+++.+.+.|++++ + .+ .+. ....+ ... + .. +.+.. +
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~---------~-~~-R~~~~~~~~~~~~~l~~~~~~~v~~v~~-------D 64 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTF---------I-YA-RPLTPDSTPSSVQLREEFRSMGVTIIEG-------E 64 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEE---------E-EE-CCCCTTCCHHHHHHHHHHHHTTCEEEEC-------C
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEE---------E-EE-CCcccccChHHHHHHHHhhcCCcEEEEe-------c
Confidence 4568999995 9999999999999998775 1 12 111 00001 100 0 11 23332 5
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCC--CCCchHHHHHHcC-C-eEe----CCC-------HHHHHHhcCHHHHHHHHH
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWGHAS--EIPELPDTLSTKG-I-IFL----GPP-------ATSMAALGDKIGSSLIAQ 181 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G~~s--En~~la~~l~~~G-I-~fi----GPs-------~eam~~lgDK~~~k~laq 181 (2267)
+.|.+.+.++++ ++|+|+-.-|... ....+.+++.+.| + .|+ |.+ .........|.....+++
T Consensus 65 ~~d~~~l~~a~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~ 142 (321)
T 3c1o_A 65 MEEHEKMVSVLK--QVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIE 142 (321)
T ss_dssp TTCHHHHHHHHT--TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCSSCGGGCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHc--CCCEEEECCCccchhhHHHHHHHHHHhCCccEEeccccccCccccccCCCcchHHHHHHHHHHHHH
Confidence 567777777665 4788886544321 1122445666666 4 233 210 011122266888888888
Q ss_pred HcCCCC
Q 000092 182 AANVPT 187 (2267)
Q Consensus 182 ~aGVPt 187 (2267)
+.|+++
T Consensus 143 ~~~~~~ 148 (321)
T 3c1o_A 143 AAALPY 148 (321)
T ss_dssp HHTCCB
T ss_pred HcCCCe
Confidence 888764
No 406
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=41.20 E-value=16 Score=45.32 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=29.2
Q ss_pred eeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000092 726 PLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 726 ~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~ 756 (2267)
-|+||.+|.+...++.|+.|++||+|++|..
T Consensus 292 ~v~A~~~Gl~~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 292 KFHAPKAGMVEYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEECSSCEEEEECSCTTCCBCTTCEEEEEEC
T ss_pred EEecCCCEEEEEeCCCCCEeCCCCEEEEEEc
Confidence 5899999999999999999999999999986
No 407
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=40.68 E-value=48 Score=39.52 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=46.6
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 48 ~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+++|||.| +|.++..+++.+.+.|++|+ ++..+.......+...+....+.+ +..|.+.+.++
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~~~l~~~~~~~~~~~-----Dl~d~~~~~~~ 84 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVV-----------GIDNFATGRREHLKDHPNLTFVEG-----SIADHALVNQL 84 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EEECCSSCCGGGSCCCTTEEEEEC-----CTTCHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEE-----------EEECCCccchhhHhhcCCceEEEE-----eCCCHHHHHHH
Confidence 46899998 59999999999999998875 221111111111110012222221 45667778888
Q ss_pred HHHcCCCEEEeCCC
Q 000092 127 AEMTRVDAVWPGWG 140 (2267)
Q Consensus 127 A~~~~vDaV~pG~G 140 (2267)
++..++|+|+-.-|
T Consensus 85 ~~~~~~D~vih~A~ 98 (333)
T 2q1w_A 85 IGDLQPDAVVHTAA 98 (333)
T ss_dssp HHHHCCSEEEECCC
T ss_pred HhccCCcEEEECce
Confidence 77777999985433
No 408
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=40.65 E-value=12 Score=50.29 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=55.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+++|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~e-A~~ 180 (725)
T 2wtb_A 102 RKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEE-GHS 180 (725)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred cCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999998764332 2333445555322 11111222211 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+..++|..
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~a~ 202 (725)
T 2wtb_A 181 LGLIDAVVPPA-ELVTTARRWAL 202 (725)
T ss_dssp HTSCSEECCTT-THHHHHHHHHH
T ss_pred CCccceEcChh-HHHHHHHHHHH
Confidence 89999999643 33444445433
No 409
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=39.98 E-value=82 Score=37.51 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=43.3
Q ss_pred CCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHH
Q 000092 46 KPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 46 ~~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il 124 (2267)
...++|||.|. |.++..+++.+.+.|++|+ ++ +...... --+++.. +..|.+.+.
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~-----------~~--~r~~~~~----~~~~~~~-------Dl~d~~~~~ 72 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVR-----------GF--DLRPSGT----GGEEVVG-------SLEDGQALS 72 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEE-----------EE--ESSCCSS----CCSEEES-------CTTCHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEE-----------EE--eCCCCCC----CccEEec-------CcCCHHHHH
Confidence 34568999996 9999999999999999885 22 2111110 0112322 456677777
Q ss_pred HHHHHcCCCEEEeCCC
Q 000092 125 EMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G 140 (2267)
++++ ++|+|+-.-+
T Consensus 73 ~~~~--~~d~vih~A~ 86 (347)
T 4id9_A 73 DAIM--GVSAVLHLGA 86 (347)
T ss_dssp HHHT--TCSEEEECCC
T ss_pred HHHh--CCCEEEECCc
Confidence 7766 7899885433
No 410
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=39.98 E-value=35 Score=42.55 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=69.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCC---cccccccceeEEEEEeccCCCCCChhhhhcc----------EEEEccCCCCC
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAY---ETFGTEKAILLVAMATPEDMRINAEHIRIAD----------QFVEVPGGTNN 114 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~---~v~~~~~~i~~v~~~t~~D~~~~a~~vr~AD----------e~v~vp~~~~~ 114 (2267)
|+||+|+|.|.++..+++.+.+.|. .+ +++. .+.. ..-+.++ ..+.+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V----------~v~~-r~~~---~~~~la~~l~~~~~~~~~~~~~------ 60 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHI----------TLAS-RTLS---KCQEIAQSIKAKGYGEIDITTV------ 60 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEE----------EEEE-SCHH---HHHHHHHHHHHTTCCCCEEEEC------
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEE----------EEEE-CCHH---HHHHHHHHhhhhcCCceEEEEe------
Confidence 4799999999999999999998873 33 2222 1111 1111221 22232
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeC----CCHHHH-HHhcCHHHHHHHHHHcCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLG----PPATSM-AALGDKIGSSLIAQAANVPTLP 189 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiG----Ps~eam-~~lgDK~~~k~laq~aGVPtpp 189 (2267)
+..|.+.+.++++..++|.|+..-|... +..+.+.|.+.|..++- .++... .....-......++++|+.+.+
T Consensus 61 -D~~d~~~l~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~ 138 (405)
T 4ina_A 61 -DADSIEELVALINEVKPQIVLNIALPYQ-DLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL 138 (405)
T ss_dssp -CTTCHHHHHHHHHHHCCSEEEECSCGGG-HHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred -cCCCHHHHHHHHHhhCCCEEEECCCccc-ChHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence 3345677888888878999996654322 24466777777777761 111000 0000012455667777877666
Q ss_pred CCC
Q 000092 190 WSG 192 (2267)
Q Consensus 190 ~~~ 192 (2267)
..+
T Consensus 139 g~G 141 (405)
T 4ina_A 139 GSG 141 (405)
T ss_dssp CCB
T ss_pred cCC
Confidence 443
No 411
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=39.87 E-value=37 Score=39.63 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=26.1
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
|..+|+|+|+|.+++.+...+++.|+++.
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~ 42 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARYMLKTL 42 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CccCEEEECccHHHHHHHHHHHHCCCcEE
Confidence 45799999999999999999999998864
No 412
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=39.58 E-value=84 Score=36.65 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=65.2
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCC-CCCCh--hh------hh-ccEEEEccCCCCCCC
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDM-RINAE--HI------RI-ADQFVEVPGGTNNNN 116 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~-~~~a~--~v------r~-ADe~v~vp~~~~~~~ 116 (2267)
+++|||.|. |.++..+++.+.+.|++++ ++.- +. ....+ .. .. --+.+.. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~---------~~~R--~~~~~~~~~~~~~~~~~l~~~~v~~v~~-------D 63 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTY---------ALVR--KTITAANPETKEELIDNYQSLGVILLEG-------D 63 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEE---------EEEC--CSCCSSCHHHHHHHHHHHHHTTCEEEEC-------C
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEE---------EEEC--CCcccCChHHHHHHHHHHHhCCCEEEEe-------C
Confidence 467999996 9999999999999998775 1111 11 00001 00 00 0123332 4
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCC--CCCchHHHHHHcC-C-eEe----CC--------CHHHHHHhcCHHHHHHHH
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWGHAS--EIPELPDTLSTKG-I-IFL----GP--------PATSMAALGDKIGSSLIA 180 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G~~s--En~~la~~l~~~G-I-~fi----GP--------s~eam~~lgDK~~~k~la 180 (2267)
+.|.+.+.++++ ++|+|+-.-|... ....+.+++.+.| + .|+ |. .+. ......|......+
T Consensus 64 ~~d~~~l~~~~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~-~~~y~sK~~~e~~~ 140 (307)
T 2gas_A 64 INDHETLVKAIK--QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHDAVEPV-RQVFEEKASIRRVI 140 (307)
T ss_dssp TTCHHHHHHHHT--TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHh--CCCEEEECCcccccccHHHHHHHHHhcCCceEEeecccccCcccccCCCcc-hhHHHHHHHHHHHH
Confidence 556677766665 5788775544321 1112345555555 4 232 21 111 11225688888888
Q ss_pred HHcCCCC
Q 000092 181 QAANVPT 187 (2267)
Q Consensus 181 q~aGVPt 187 (2267)
++.|+++
T Consensus 141 ~~~~i~~ 147 (307)
T 2gas_A 141 EAEGVPY 147 (307)
T ss_dssp HHHTCCB
T ss_pred HHcCCCe
Confidence 8888774
No 413
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=38.92 E-value=73 Score=38.53 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-h--------ccEEEEccCCCCCC
Q 000092 46 KPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-I--------ADQFVEVPGGTNNN 115 (2267)
Q Consensus 46 ~~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr-~--------ADe~v~vp~~~~~~ 115 (2267)
.|+++|||.|. |.++..+++.+.+.|++|+ ++.-..+ ......+. + ......+.+
T Consensus 22 ~M~~~vlVtGatG~iG~~l~~~L~~~g~~V~---------~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~----- 86 (375)
T 1t2a_A 22 HMRNVALITGITGQDGSYLAEFLLEKGYEVH---------GIVRRSS-SFNTGRIEHLYKNPQAHIEGNMKLHYG----- 86 (375)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEE---------EEECCCS-SCCCTTTGGGC---------CEEEEEC-----
T ss_pred hcCcEEEEECCCchHHHHHHHHHHHCCCEEE---------EEECCcc-ccchhhHHHHhhhhccccCCCceEEEc-----
Confidence 35589999994 9999999999999998875 1221111 00001111 1 011212221
Q ss_pred CccCHHHHHHHHHHcCCCEEEeC
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPG 138 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG 138 (2267)
+..|.+.+.++++..++|+|+-.
T Consensus 87 Dl~d~~~~~~~~~~~~~d~vih~ 109 (375)
T 1t2a_A 87 DLTDSTCLVKIINEVKPTEIYNL 109 (375)
T ss_dssp CTTCHHHHHHHHHHHCCSEEEEC
T ss_pred cCCCHHHHHHHHHhcCCCEEEEC
Confidence 45677888888887789998854
No 414
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=36.24 E-value=71 Score=38.54 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=25.0
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHc-CCccc
Q 000092 48 IHSILIAN-NGMAAVKFIRSIRTW-AYETF 75 (2267)
Q Consensus 48 ~kkVLIan-~G~~Av~iIrsaR~l-G~~v~ 75 (2267)
++||||.| .|.++..+++.+.+. |++|+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~ 53 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVF 53 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEE
Confidence 57999999 599999999999998 88875
No 415
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=36.17 E-value=42 Score=38.86 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.7
Q ss_pred cEEEEECc-hHHHHHHHHHHHHc--CCccc
Q 000092 49 HSILIANN-GMAAVKFIRSIRTW--AYETF 75 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~l--G~~v~ 75 (2267)
++|||.|. |.++..+++.+.+. |++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~ 30 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQII 30 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEE
Confidence 46999996 99999999999998 88875
No 416
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=35.65 E-value=60 Score=38.64 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=45.8
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 49 HSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
++|||.|. |.++..+++.+.+.|++++ ++..+................+.+ +..|.+.+.+++
T Consensus 21 ~~vlVTGasG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~~~~~~l~~v~~~~~-----Dl~d~~~~~~~~ 84 (330)
T 2pzm_A 21 MRILITGGAGCLGSNLIEHWLPQGHEIL-----------VIDNFATGKREVLPPVAGLSVIEG-----SVTDAGLLERAF 84 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHGGGTCEEE-----------EEECCSSSCGGGSCSCTTEEEEEC-----CTTCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE-----------EEECCCccchhhhhccCCceEEEe-----eCCCHHHHHHHH
Confidence 47999996 9999999999999998875 221111111100000011212221 456677787877
Q ss_pred HHcCCCEEEeCCC
Q 000092 128 EMTRVDAVWPGWG 140 (2267)
Q Consensus 128 ~~~~vDaV~pG~G 140 (2267)
++.++|+|+-.-|
T Consensus 85 ~~~~~D~vih~A~ 97 (330)
T 2pzm_A 85 DSFKPTHVVHSAA 97 (330)
T ss_dssp HHHCCSEEEECCC
T ss_pred hhcCCCEEEECCc
Confidence 7778999885544
No 417
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=35.25 E-value=77 Score=37.71 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=25.4
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCccc
Q 000092 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan-~G~~Av~iIrsaR~lG~~v~ 75 (2267)
|.++|||.| .|.++..+++.+.+.|++|+
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 30 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPV 30 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence 457999998 49999999999999998875
No 418
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=35.01 E-value=1e+02 Score=37.32 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=25.4
Q ss_pred CCccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000092 46 KPIHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 46 ~~~kkVLIan~-G~~Av~iIrsaR~lG~~v~ 75 (2267)
.|+++|||.|. |.++..+++.+.+.|++|+
T Consensus 26 ~M~k~vlVtGatG~IG~~l~~~L~~~g~~V~ 56 (381)
T 1n7h_A 26 EPRKIALITGITGQDGSYLTEFLLGKGYEVH 56 (381)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred hhCCeEEEEcCCchHHHHHHHHHHHCCCEEE
Confidence 35589999996 9999999999999998875
No 419
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=34.85 E-value=85 Score=38.17 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=25.6
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000092 47 PIHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan~-G~~Av~iIrsaR~lG~~v~ 75 (2267)
++++|||.|. |.++..+++.+.+.|++++
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 57 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVI 57 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEE
Confidence 4578999996 9999999999999998875
No 420
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=34.81 E-value=67 Score=37.77 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh-hhc-----hH---HHHHHHHHHHhcCCCCEEEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL-FEG-----IL---QAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e-~~g-----il---k~ga~iv~al~~~~vP~i~vI 2008 (2267)
...++++......++++.+.. ..+=+|+|.-.+ .|+.|..-. ... .. .+....+ ....+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kPvIAav 108 (267)
T 3r9t_A 30 RNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGY-VRHFIDKPTIAAV 108 (267)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGT-TTCCCSSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHH-HHHhCCCCEEEEE
Confidence 367889999999999998876 467778886654 377664211 000 00 0000111 1226789999999
Q ss_pred ccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.||+ .+++. .|+ ++|.++++++.
T Consensus 109 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 136 (267)
T 3r9t_A 109 N--GTALGGGTELALA----SDL--VVADERAQFGL 136 (267)
T ss_dssp C--SEECTHHHHHHHH----SSE--EEEETTCEECC
T ss_pred C--CEEEhHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 6 6666654 44444 377 88888888765
No 421
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=33.90 E-value=39 Score=40.80 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=52.7
Q ss_pred ccEEEEECchHHHHH-HHHHHHHcCCcccccccceeEEEEEeccCCCCCChh---hhhccEEEEccCCCCCCCccCHHHH
Q 000092 48 IHSILIANNGMAAVK-FIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEH---IRIADQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~-iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~---vr~ADe~v~vp~~~~~~~Y~dvd~I 123 (2267)
++||+|+|-|.+++. +.+-++++|++|. .. |.....+. ++...-.+..+ ....+ +
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~-----------~~--D~~~~~~~~~~L~~~gi~v~~g--~~~~~------l 62 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVS-----------GC--DAKMYPPMSTQLEALGIDVYEG--FDAAQ------L 62 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEE-----------EE--ESSCCTTHHHHHHHTTCEEEES--CCGGG------G
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEE-----------EE--cCCCCcHHHHHHHhCCCEEECC--CCHHH------c
Confidence 689999999999996 7889999999986 33 43332222 22222223332 11111 1
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeC
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLG 161 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiG 161 (2267)
.+ .++|.|+..-|....+|++.+ ..+.|+++++
T Consensus 63 ~~----~~~d~vV~Spgi~~~~p~~~~-a~~~gi~v~~ 95 (326)
T 3eag_A 63 DE----FKADVYVIGNVAKRGMDVVEA-ILNLGLPYIS 95 (326)
T ss_dssp GS----CCCSEEEECTTCCTTCHHHHH-HHHTTCCEEE
T ss_pred CC----CCCCEEEECCCcCCCCHHHHH-HHHcCCcEEe
Confidence 00 357888877666666665544 4567888874
No 422
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=33.78 E-value=59 Score=38.85 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=31.3
Q ss_pred hhhHHHHHHhcCCCCCccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000092 32 MSEVDEFCRSLGGKKPIHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 32 ~~~~~~~~~~~~g~~~~kkVLIan~-G~~Av~iIrsaR~lG~~v~ 75 (2267)
+++++++-.... .+.++|||.|+ |.++..+++.+.+.|++|+
T Consensus 11 ~~~~~~~~~~~~--~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 53 (351)
T 3ruf_A 11 MSRYEEITQQLI--FSPKTWLITGVAGFIGSNLLEKLLKLNQVVI 53 (351)
T ss_dssp CHHHHHHHHHHH--HSCCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhhHHhhCC--CCCCeEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 345555554321 23479999994 9999999999999998875
No 423
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=33.22 E-value=98 Score=36.64 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=45.3
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCC----hhhhhcc--EEEEccCCCCCCCccCH
Q 000092 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINA----EHIRIAD--QFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 48 ~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a----~~vr~AD--e~v~vp~~~~~~~Y~dv 120 (2267)
|++|||.| +|.++..+++.+.+.|++|+ ++........ ..+.... +++.. +..|.
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~~~~~~~l~~~~~~~~~~~-------Dl~d~ 62 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLI-----------VFDNLSRKGATDNLHWLSSLGNFEFVHG-------DIRNK 62 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EEECCCSTTHHHHHHHHHTTCCCEEEEC-------CTTCH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEE-----------EEeCCCccCchhhhhhhccCCceEEEEc-------CCCCH
Confidence 46899999 59999999999999998875 2211110111 0111111 22322 45567
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 000092 121 QLIVEMAEMTRVDAVWPG 138 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG 138 (2267)
+.+.++.+..++|+|+-.
T Consensus 63 ~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 63 NDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp HHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHhccCCCEEEEC
Confidence 778888777779998854
No 424
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=32.82 E-value=1.1e+02 Score=36.24 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=46.3
Q ss_pred CCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCC-CChhhhh---ccEEEEccCCCCCCCccCH
Q 000092 46 KPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRI-NAEHIRI---ADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 46 ~~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~-~a~~vr~---ADe~v~vp~~~~~~~Y~dv 120 (2267)
.+.+||||.|+ |.++..+++.+.+.|++++ ++..+... ....+.. .+....+.+ +..|.
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----Dl~d~ 75 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVH-----------GLVARRSSDTRWRLRELGIEGDIQYEDG-----DMADA 75 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EEECCCSSCCCHHHHHTTCGGGEEEEEC-----CTTCH
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEE-----------EEeCCCccccccchhhccccCceEEEEC-----CCCCH
Confidence 46788999995 9999999999999998875 22111111 1111111 112212211 45677
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 000092 121 QLIVEMAEMTRVDAVWPG 138 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG 138 (2267)
+.+.++++..++|+|+-.
T Consensus 76 ~~~~~~~~~~~~d~Vih~ 93 (335)
T 1rpn_A 76 CSVQRAVIKAQPQEVYNL 93 (335)
T ss_dssp HHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 888888887789998854
No 425
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=32.65 E-value=48 Score=38.34 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=26.2
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
.|++||||.|.|.++..+++.+.+.|++++
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~ 32 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGWRII 32 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTCEEE
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCCEEE
Confidence 467899999999999999999999999875
No 426
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=32.31 E-value=96 Score=36.39 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=46.0
Q ss_pred CCCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHH
Q 000092 45 KKPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 45 ~~~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~I 123 (2267)
+...++|||.|+ |.++..+++.+.+.|++|+ ++..+.... . + --+++.. +..|.+.+
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~-----------~~~r~~~~~-~-l--~~~~~~~-------Dl~d~~~~ 66 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVF-----------GTSRNNEAK-L-P--NVEMISL-------DIMDSQRV 66 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EEESCTTCC-C-T--TEEEEEC-------CTTCHHHH
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCEEE-----------EEecCCccc-c-c--eeeEEEC-------CCCCHHHH
Confidence 455688999995 8999999999999998875 221111111 1 1 1122222 44577888
Q ss_pred HHHHHHcCCCEEEeCCC
Q 000092 124 VEMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G 140 (2267)
.++.+..++|+|+-.-|
T Consensus 67 ~~~~~~~~~d~vih~A~ 83 (321)
T 2pk3_A 67 KKVISDIKPDYIFHLAA 83 (321)
T ss_dssp HHHHHHHCCSEEEECCS
T ss_pred HHHHHhcCCCEEEEcCc
Confidence 88887777999885433
No 427
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=31.76 E-value=63 Score=39.40 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=22.7
Q ss_pred CccEEEEECchH-----HHHHHHHHHHHcCCccc
Q 000092 47 PIHSILIANNGM-----AAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan~G~-----~Av~iIrsaR~lG~~v~ 75 (2267)
|.+||||+++|. -|+.+++.+++.|+++.
T Consensus 1 M~~~i~i~~GGTgGHi~palala~~L~~~g~~V~ 34 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFPALACAREFQARGYAVH 34 (365)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 568999999764 37889999999999874
No 428
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=31.69 E-value=42 Score=39.46 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=25.0
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000092 47 PIHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan~-G~~Av~iIrsaR~lG~~v~ 75 (2267)
|.++|||.|. |.++..+++.+.+.|++++
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 30 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAV 30 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTCEEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCCeEE
Confidence 3478999996 9999999999999998875
No 429
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=30.20 E-value=25 Score=40.19 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=23.2
Q ss_pred hHHHHHHhcCCCCCccEEEEECchHHHHHHHHH
Q 000092 34 EVDEFCRSLGGKKPIHSILIANNGMAAVKFIRS 66 (2267)
Q Consensus 34 ~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrs 66 (2267)
.+.+++++.=|.....+|+|+|.|.++..+++.
T Consensus 66 ~L~~~~~~~lg~~~~~rV~IIGaG~~G~~la~~ 98 (211)
T 2dt5_A 66 VLKRELRHILGLNRKWGLCIVGMGRLGSALADY 98 (211)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECCSHHHHHHHHC
T ss_pred HHHHHHHHHhCcCCCCEEEEECccHHHHHHHHh
Confidence 444554444344445799999999999988874
No 430
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=29.82 E-value=46 Score=38.26 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=44.8
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
|+++|||.|. |.++..+++.+.+.|++++ ++ +.+.... . ......+.. +..|.+.+.+
T Consensus 1 M~~~ilVtGatG~iG~~l~~~L~~~g~~V~-----------~~--~r~~~~~-~--~~~~~~~~~-----Dl~d~~~~~~ 59 (267)
T 3ay3_A 1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVR-----------LS--DIVDLGA-A--EAHEEIVAC-----DLADAQAVHD 59 (267)
T ss_dssp CEEEEEEESTTSHHHHHHGGGGGGTEEEEE-----------EC--CSSCCCC-C--CTTEEECCC-----CTTCHHHHHH
T ss_pred CCceEEEECCCCHHHHHHHHHHHhCCCEEE-----------EE--eCCCccc-c--CCCccEEEc-----cCCCHHHHHH
Confidence 5789999996 9999999999999888775 33 1111110 0 111222222 4456677777
Q ss_pred HHHHcCCCEEEeCCCc
Q 000092 126 MAEMTRVDAVWPGWGH 141 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~ 141 (2267)
+++ ++|+|+-.-|.
T Consensus 60 ~~~--~~d~vi~~a~~ 73 (267)
T 3ay3_A 60 LVK--DCDGIIHLGGV 73 (267)
T ss_dssp HHT--TCSEEEECCSC
T ss_pred HHc--CCCEEEECCcC
Confidence 665 58998855443
No 431
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=29.72 E-value=57 Score=39.56 Aligned_cols=27 Identities=11% Similarity=-0.070 Sum_probs=21.9
Q ss_pred CCCCccEEEEECchHHHHHHHHHHHHc
Q 000092 44 GKKPIHSILIANNGMAAVKFIRSIRTW 70 (2267)
Q Consensus 44 g~~~~kkVLIan~G~~Av~iIrsaR~l 70 (2267)
||.+.-||.|+|.|.++...++.+++.
T Consensus 1 gM~~~~~vgiiG~G~~g~~~~~~l~~~ 27 (354)
T 3db2_A 1 GMYNPVGVAAIGLGRWAYVMADAYTKS 27 (354)
T ss_dssp -CCCCEEEEEECCSHHHHHHHHHHTTC
T ss_pred CCCCcceEEEEccCHHHHHHHHHHHhC
Confidence 444556899999999999999998876
No 432
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=29.46 E-value=72 Score=33.65 Aligned_cols=27 Identities=7% Similarity=0.199 Sum_probs=24.9
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
++|+|+|.|..+..+++.+.+.|++++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~ 30 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVT 30 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 579999999999999999999998875
No 433
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=29.38 E-value=56 Score=39.86 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=52.7
Q ss_pred hcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-hccEEEEccCCCCCCCccC
Q 000092 41 SLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-IADQFVEVPGGTNNNNYAN 119 (2267)
Q Consensus 41 ~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr-~ADe~v~vp~~~~~~~Y~d 119 (2267)
+.++-+.-++|||.|.|..+.-+++.+|.+|++++ ++..+...-....+ -||+.+. . ...++
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi-----------~~~~~~~~~~~~~~lGa~~vi~-~---~~~~~-- 245 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVI-----------VTSSSREKLDRAFALGADHGIN-R---LEEDW-- 245 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEE-----------EEESCHHHHHHHHHHTCSEEEE-T---TTSCH--
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EEecCchhHHHHHHcCCCEEEc-C---CcccH--
Confidence 45666777899999999999999999999998775 33111111111111 2566654 2 11233
Q ss_pred HHHHHHHHHHcCCCEEEeCCC
Q 000092 120 VQLIVEMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 120 vd~Il~iA~~~~vDaV~pG~G 140 (2267)
.+.+.++....++|.|+-..|
T Consensus 246 ~~~v~~~~~g~g~D~vid~~g 266 (363)
T 3uog_A 246 VERVYALTGDRGADHILEIAG 266 (363)
T ss_dssp HHHHHHHHTTCCEEEEEEETT
T ss_pred HHHHHHHhCCCCceEEEECCC
Confidence 456666665568999997655
No 434
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=29.22 E-value=1.1e+02 Score=36.26 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.7
Q ss_pred EEEEECc-hHHHHHHHHHHHHcCCccc
Q 000092 50 SILIANN-GMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 50 kVLIan~-G~~Av~iIrsaR~lG~~v~ 75 (2267)
||||.|. |.++..+++.+.+.|++++
T Consensus 15 ~ilVtGatG~iG~~l~~~L~~~g~~V~ 41 (342)
T 2x4g_A 15 KYAVLGATGLLGHHAARAIRAAGHDLV 41 (342)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 8999995 9999999999999998875
No 435
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=28.66 E-value=94 Score=37.18 Aligned_cols=72 Identities=10% Similarity=0.020 Sum_probs=46.0
Q ss_pred cEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh---cc--EEEEccCCCCCCCccCHHH
Q 000092 49 HSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI---AD--QFVEVPGGTNNNNYANVQL 122 (2267)
Q Consensus 49 kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~---AD--e~v~vp~~~~~~~Y~dvd~ 122 (2267)
++|||.| +|.++..+++.+.+.|++|+ ++..+.......... .+ +++.. +..|.+.
T Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~ 71 (357)
T 1rkx_A 10 KRVFVTGHTGFKGGWLSLWLQTMGATVK-----------GYSLTAPTVPSLFETARVADGMQSEIG-------DIRDQNK 71 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EEESSCSSSSCHHHHTTTTTTSEEEEC-------CTTCHHH
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEE-----------EEeCCCcccchhhHhhccCCceEEEEc-------cccCHHH
Confidence 5899999 59999999999999998875 221111111111111 11 23332 4566788
Q ss_pred HHHHHHHcCCCEEEeC
Q 000092 123 IVEMAEMTRVDAVWPG 138 (2267)
Q Consensus 123 Il~iA~~~~vDaV~pG 138 (2267)
+.++++..++|+|+-.
T Consensus 72 ~~~~~~~~~~d~vih~ 87 (357)
T 1rkx_A 72 LLESIREFQPEIVFHM 87 (357)
T ss_dssp HHHHHHHHCCSEEEEC
T ss_pred HHHHHHhcCCCEEEEC
Confidence 8888887789998854
No 436
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=28.63 E-value=54 Score=41.81 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=67.7
Q ss_pred CccEEEEECchHHHHHHHHHHHHc-CCcccccccceeEEEEEeccCCCCCChhhhhcc----EEEEccCCCCCCCccCHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTW-AYETFGTEKAILLVAMATPEDMRINAEHIRIAD----QFVEVPGGTNNNNYANVQ 121 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~l-G~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~AD----e~v~vp~~~~~~~Y~dvd 121 (2267)
.+++|||+|.|.++..+++.+.+. |++++ ++. .+. ...-.+++ ..+.+ ++.|.+
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~----------v~~---R~~-~ka~~la~~~~~~~~~~-------D~~d~~ 80 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDINVT----------VAC---RTL-ANAQALAKPSGSKAISL-------DVTDDS 80 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEEEE----------EEE---SSH-HHHHHHHGGGTCEEEEC-------CTTCHH
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCeEE----------EEE---CCH-HHHHHHHHhcCCcEEEE-------ecCCHH
Confidence 467999999999999999999987 55432 222 111 11112222 12222 334556
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCC
Q 000092 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2267)
Q Consensus 122 ~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~ 192 (2267)
.+.++++ ++|+|+..-+... .+.+.+.|.+.|..++-++...- +.......++++|+.+....+
T Consensus 81 ~l~~~l~--~~DvVIn~tp~~~-~~~v~~a~l~~g~~vvd~~~~~p----~~~~Ll~~Ak~aGv~~i~g~G 144 (467)
T 2axq_A 81 ALDKVLA--DNDVVISLIPYTF-HPNVVKSAIRTKTDVVTSSYISP----ALRELEPEIVKAGITVMNEIG 144 (467)
T ss_dssp HHHHHHH--TSSEEEECSCGGG-HHHHHHHHHHHTCEEEECSCCCH----HHHHHHHHHHHHTCEEECSCB
T ss_pred HHHHHHc--CCCEEEECCchhh-hHHHHHHHHhcCCEEEEeecCCH----HHHHHHHHHHHcCCEEEecCC
Confidence 6666554 6899997655332 23356667777777764432000 013444677889988766443
No 437
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=28.48 E-value=65 Score=37.84 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=26.8
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
.+.++|+|+|+|.+++.+...+++.|+++.
T Consensus 20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~ 49 (338)
T 3itj_A 20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPI 49 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCCE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEE
Confidence 467899999999999999999999998875
No 438
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=28.20 E-value=61 Score=36.20 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=36.1
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
.+.|+|+..|+|+..- |. +++|+--.=...+.+- +..+ |++||.|++||+|+.+..
T Consensus 48 gtpV~A~~~G~V~~~~---------G~-~V~I~H~~g~~t~Y~H----L~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 48 TYSVVAAHAGTVRVLS---------RC-QVRVTHPSGWATNYYH----MDQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCEEECSSSEEEEEEE---------TT-EEEEECTTSEEEEEES----EESCCCCTTCEECTTCEEEEECS
T ss_pred CCEEEeccCEEEEEEC---------Ce-EEEEEECCcEEEEEEc----CCccccCCCCEEcCCCEEEeecC
Confidence 3689999999998863 32 4444432211222221 1234 899999999999999864
No 439
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=28.00 E-value=1.4e+02 Score=34.36 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=50.3
Q ss_pred cEEEEE--CchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccE----EEEccCCCCCCCccC---
Q 000092 49 HSILIA--NNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ----FVEVPGGTNNNNYAN--- 119 (2267)
Q Consensus 49 kkVLIa--n~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe----~v~vp~~~~~~~Y~d--- 119 (2267)
.||+|+ |+|..+..+++++.+-.. +.+.++|++.. +++.....|.+ ++.++. .+|.+
T Consensus 23 ~rI~~l~SG~g~~~~~~l~~l~~~~~-------~~~I~~Vvt~~---~~~~~~~~A~~~gIp~~~~~~----~~~~~r~~ 88 (229)
T 3auf_A 23 IRIGVLISGSGTNLQAILDGCREGRI-------PGRVAVVISDR---ADAYGLERARRAGVDALHMDP----AAYPSRTA 88 (229)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHTTSS-------SEEEEEEEESS---TTCHHHHHHHHTTCEEEECCG----GGSSSHHH
T ss_pred cEEEEEEeCCcHHHHHHHHHHHhCCC-------CCeEEEEEcCC---CchHHHHHHHHcCCCEEEECc----ccccchhh
Confidence 578887 999999999999886421 23445667732 34555555654 333322 23333
Q ss_pred -HHHHHHHHHHcCCCEEE-eCCCc
Q 000092 120 -VQLIVEMAEMTRVDAVW-PGWGH 141 (2267)
Q Consensus 120 -vd~Il~iA~~~~vDaV~-pG~G~ 141 (2267)
-+.+++..++.++|.|+ .||+.
T Consensus 89 ~~~~~~~~l~~~~~Dliv~agy~~ 112 (229)
T 3auf_A 89 FDAALAERLQAYGVDLVCLAGYMR 112 (229)
T ss_dssp HHHHHHHHHHHTTCSEEEESSCCS
T ss_pred ccHHHHHHHHhcCCCEEEEcChhH
Confidence 36788899999999766 45553
No 440
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=27.90 E-value=1.3e+02 Score=35.93 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=54.0
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|.||.|+|. |.++...++++++.+.++ ++++.. +.... ..+.++ | ...-|.+.+.+++.
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~l---------vav~d~---~~~~~--~~~~~~---~---~~~~~~~~~~ll~~ 62 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVL---------VASLDP---ATNVG--LVDSFF---P---EAEFFTEPEAFEAY 62 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEE---------EEEECS---SCCCG--GGGGTC---T---TCEEESCHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEE---------EEEEcC---CHHHH--HHHhhC---C---CCceeCCHHHHHHH
Confidence 468999998 678888999999875443 454432 22221 222221 1 23457788888876
Q ss_pred H-----HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEe
Q 000092 127 A-----EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL 160 (2267)
Q Consensus 127 A-----~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fi 160 (2267)
+ ....+|+|+...-. ....++...+.++|..++
T Consensus 63 ~~~l~~~~~~vD~V~I~tP~-~~H~~~~~~al~aGkhVl 100 (312)
T 3o9z_A 63 LEDLRDRGEGVDYLSIASPN-HLHYPQIRMALRLGANAL 100 (312)
T ss_dssp HHHHHHTTCCCSEEEECSCG-GGHHHHHHHHHHTTCEEE
T ss_pred hhhhcccCCCCcEEEECCCc-hhhHHHHHHHHHCCCeEE
Confidence 5 45689999855221 122233444555666554
No 441
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=27.76 E-value=52 Score=41.79 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=25.0
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
++|||+|.|..|.+.++.+.+.|..+.
T Consensus 13 ~~vlVvGgG~va~~k~~~L~~~ga~V~ 39 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLLEAGARLT 39 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEE
Confidence 689999999999999999999998764
No 442
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=26.84 E-value=1.6e+02 Score=34.69 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=47.5
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCC-CChhhhhc---cEEEEccCCCCCCCccCHHHH
Q 000092 49 HSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRI-NAEHIRIA---DQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~-~a~~vr~A---De~v~vp~~~~~~~Y~dvd~I 123 (2267)
++|||.|. |.++..+++.+.+.|++++ ++..+... ....+... .....+.+ +..|.+.+
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~-----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----Dl~d~~~~ 67 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLLEKGYEVY-----------GADRRSGEFASWRLKELGIENDVKIIHM-----DLLEFSNI 67 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EECSCCSTTTTHHHHHTTCTTTEEECCC-----CTTCHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE-----------EEECCCcccccccHhhccccCceeEEEC-----CCCCHHHH
Confidence 58999996 9999999999999998875 33111111 11111111 12222322 45677888
Q ss_pred HHHHHHcCCCEEEeCCC
Q 000092 124 VEMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G 140 (2267)
.++++..++|+|+-.-|
T Consensus 68 ~~~~~~~~~d~vih~A~ 84 (345)
T 2z1m_A 68 IRTIEKVQPDEVYNLAA 84 (345)
T ss_dssp HHHHHHHCCSEEEECCC
T ss_pred HHHHHhcCCCEEEECCC
Confidence 88888778999885433
No 443
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=26.72 E-value=1.8e+02 Score=34.61 Aligned_cols=27 Identities=4% Similarity=0.009 Sum_probs=23.0
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcc
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWAYET 74 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG~~v 74 (2267)
..||.|.|- |-.+...++.+++.|++.
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~ 34 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKM 34 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeE
Confidence 368999997 999999999999888764
No 444
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=26.67 E-value=1.6e+02 Score=34.26 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=55.8
Q ss_pred EEEEEC-chHHHHHHHHHHHHc-CCcccccccceeEEEEEeccCCCCCCh-hhh-hccEEEEccCCCCCCCccCHHHHHH
Q 000092 50 SILIAN-NGMAAVKFIRSIRTW-AYETFGTEKAILLVAMATPEDMRINAE-HIR-IADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 50 kVLIan-~G~~Av~iIrsaR~l-G~~v~~~~~~i~~v~~~t~~D~~~~a~-~vr-~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
||+|+| .|..+..+++.+.+. ++++ ++++.. ..+.. ... .+|-.+.... + ......+.
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~el---------va~~d~---~~dl~~~~~~~~DvvIDfT~---p---~a~~~~~~ 63 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTL---------SAELDA---GDPLSLLTDGNTEVVIDFTH---P---DVVMGNLE 63 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEE---------EEEECT---TCCTHHHHHTTCCEEEECSC---T---TTHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEE---------EEEEcc---CCCHHHHhccCCcEEEEccC---h---HHHHHHHH
Confidence 799999 499999999998765 5554 333322 11222 222 4675554421 1 12566778
Q ss_pred HHHHcCCCEEEeCCCcCCCC-CchHHHHHHc-CCe-EeCCC
Q 000092 126 MAEMTRVDAVWPGWGHASEI-PELPDTLSTK-GII-FLGPP 163 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn-~~la~~l~~~-GI~-fiGPs 163 (2267)
.|.+.+++.|+-..|+..+. ..+.+++++. ++. ++.|+
T Consensus 64 ~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N 104 (245)
T 1p9l_A 64 FLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN 104 (245)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSC
T ss_pred HHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence 88889999988665654432 1223333333 554 45555
No 445
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=26.55 E-value=74 Score=37.14 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=24.6
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcC-Cccc
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWA-YETF 75 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG-~~v~ 75 (2267)
.++|||.|. |.++..+++.+.+.| ++++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~ 34 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVR 34 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEE
Confidence 478999996 999999999999988 7764
No 446
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=26.51 E-value=1.3e+02 Score=36.19 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=45.9
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCC-CChhhh-h-------ccEEEEccCCCCCCCc
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRI-NAEHIR-I-------ADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~-~a~~vr-~-------ADe~v~vp~~~~~~~Y 117 (2267)
|++|||.|+ |.++..+++.+.+.|++++ ++..+... ....+. . ......+.+ +.
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~-----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----Dl 64 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVH-----------GIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG-----DL 64 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE-----------EECC---------------------CCEEECCC-----CS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-----------EEECCCcccchHHHHHHhhccccCCCceEEEEC-----CC
Confidence 478999994 9999999999999998875 22111100 000010 0 012222222 45
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G 140 (2267)
.|.+.+.++++..++|.|+-.-|
T Consensus 65 ~d~~~~~~~~~~~~~d~vih~A~ 87 (372)
T 1db3_A 65 SDTSNLTRILREVQPDEVYNLGA 87 (372)
T ss_dssp SCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCHHHHHHHHHhcCCCEEEECCc
Confidence 67788888888778999885433
No 447
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=26.36 E-value=77 Score=41.09 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=26.2
Q ss_pred hhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 33 SEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 33 ~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
..+..+.+..|.....++++|+|.|..+..+++.+.+.|++++
T Consensus 333 ~~l~~~~~~~~~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~ 375 (565)
T 4gx0_A 333 SQLAALEYLIGEAPEDELIFIIGHGRIGCAAAAFLDRKPVPFI 375 (565)
T ss_dssp --------------CCCCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 3455555555554333899999999999999999999998875
No 448
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=25.58 E-value=66 Score=37.36 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=26.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
.+++|+|+|+|.+++.+...+++.|+++.
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~ 31 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNV 31 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeE
Confidence 35799999999999999999999998875
No 449
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=25.24 E-value=1.2e+02 Score=36.35 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=24.9
Q ss_pred ccEEEEECc-hHHHHHHHHHHHHcCCccc
Q 000092 48 IHSILIANN-GMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 48 ~kkVLIan~-G~~Av~iIrsaR~lG~~v~ 75 (2267)
+++|||.|. |.++..+++.+.+.|++++
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~ 55 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVV 55 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 468999996 9999999999999998875
No 450
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=24.63 E-value=2.6e+02 Score=31.24 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=25.1
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccc
Q 000092 49 HSILIANN-GMAAVKFIRSIRTWAYETFG 76 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~lG~~v~~ 76 (2267)
+||||.|. |.++..+++.+.+.|++++.
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~ 50 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKGHEPVA 50 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHhCCCeEEE
Confidence 58999996 99999999999999998864
No 451
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=24.58 E-value=47 Score=40.73 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=29.1
Q ss_pred ceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000092 724 CMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 724 ~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~ 756 (2267)
..-++||.+|.++..++.|+.|++||+|+++..
T Consensus 267 ~~~v~A~~~G~~~~~~~~g~~V~~G~~La~i~d 299 (354)
T 3cdx_A 267 DAYVMAPRTGLFEPTHYVGEEVRTGETAGWIHF 299 (354)
T ss_dssp GGEEECSSCEEEEESCCTTCEECTTSEEEEEEC
T ss_pred cEEEECCCCEEEEEeCCCCCEeCCCCEEEEEEC
Confidence 345789999988888999999999999999985
No 452
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.41 E-value=1.8e+02 Score=36.94 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=28.7
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 35 ~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
+.++-...+| ||++|.+.+..+..+.+.++++|.+++
T Consensus 303 ~~d~~~~l~g----krv~i~~~~~~~~~l~~~L~elG~~vv 339 (458)
T 1mio_B 303 MIDAQQYLQG----KKVALLGDPDEIIALSKFIIELGAIPK 339 (458)
T ss_dssp HHHTHHHHTT----CEEEEEECHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHcCC----CEEEEEcCchHHHHHHHHHHHCCCEEE
Confidence 3344344444 689999999999999999999998875
No 453
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=24.31 E-value=1.3e+02 Score=36.52 Aligned_cols=82 Identities=11% Similarity=0.013 Sum_probs=49.8
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCC-CCChhhhhccE----EEEccCCCCCCCccCHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMR-INAEHIRIADQ----FVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~-~~a~~vr~ADe----~v~vp~~~~~~~Y~dvd~I 123 (2267)
.||+++|....++.+++++.+.|+++ ++|+|..|.. ...+....|.+ ++..+.....+. +.+.+
T Consensus 23 mrIvf~G~~~fa~~~L~~L~~~~~~i---------~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~--~~~~~ 91 (329)
T 2bw0_A 23 MKIAVIGQSLFGQEVYCHLRKEGHEV---------VGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQ--ALPDV 91 (329)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEE---------EEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTE--ECHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeE---------EEEEeCCCcCCCCCHHHHHHHHcCCCEEecCccccccc--ccHHH
Confidence 48999999999999999999887655 5667744432 22344444443 233221100011 13567
Q ss_pred HHHHHHcCCCEEE-eCCCc
Q 000092 124 VEMAEMTRVDAVW-PGWGH 141 (2267)
Q Consensus 124 l~iA~~~~vDaV~-pG~G~ 141 (2267)
++..+..++|.++ .+||.
T Consensus 92 ~~~l~~~~~Dliv~a~y~~ 110 (329)
T 2bw0_A 92 VAKYQALGAELNVLPFCSQ 110 (329)
T ss_dssp HHHHHTTCCSEEEESSCSS
T ss_pred HHHHHhcCCCEEEEeehhh
Confidence 7888888999754 56653
No 454
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=24.28 E-value=50 Score=40.91 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=24.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCc
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYE 73 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~ 73 (2267)
|+++|+|+|+|.+++.+.+.+++.|++
T Consensus 1 M~~~vvIIGaG~AGl~aA~~L~~~g~~ 27 (410)
T 3ef6_A 1 MATHVAIIGNGVGGFTTAQALRAEGFE 27 (410)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEcccHHHHHHHHHHHccCcC
Confidence 467999999999999999999999987
No 455
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=23.75 E-value=61 Score=36.38 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=24.1
Q ss_pred EEEEECchHHHHHHHHHHHHcCCccc
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
||+|+|.|..+..+++.+.+.|++++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~ 27 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVV 27 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 69999999999999999999998875
No 456
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=23.65 E-value=2e+02 Score=33.02 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=63.4
Q ss_pred hhHHHHHHhcCCCCCccEEEEECch-------HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCC-hhhhhccE
Q 000092 33 SEVDEFCRSLGGKKPIHSILIANNG-------MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINA-EHIRIADQ 104 (2267)
Q Consensus 33 ~~~~~~~~~~~g~~~~kkVLIan~G-------~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a-~~vr~ADe 104 (2267)
..+.+|++ .-+||+|+.-+ ...-.+.++++++|+++. .+. ...+. ..++.||
T Consensus 22 ~~l~~~~~------~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~-----------~v~--~~~d~~~~l~~ad- 81 (229)
T 1fy2_A 22 PLIANQLN------GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVT-----------GIH--RVADPLAAIEKAE- 81 (229)
T ss_dssp HHHHHHHT------TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEE-----------ETT--SSSCHHHHHHHCS-
T ss_pred HHHHHHhc------CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE-----------EEe--ccccHHHHHhcCC-
Confidence 34677774 13789999866 566778889999998764 331 11122 5677888
Q ss_pred EEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHh
Q 000092 105 FVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170 (2267)
Q Consensus 105 ~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~l 170 (2267)
.+.+|||. ...+.+..++.+.+. .+.+.+ +.|.+++|-+.-++-++
T Consensus 82 ~I~lpGG~-------~~~~~~~l~~~gl~~------------~l~~~~-~~G~p~~G~sAG~~~l~ 127 (229)
T 1fy2_A 82 IIIVGGGN-------TFQLLKESRERGLLA------------PMADRV-KRGALYIGWSAGANLAC 127 (229)
T ss_dssp EEEECCSC-------HHHHHHHHHHTTCHH------------HHHHHH-HTTCEEEEETHHHHHTS
T ss_pred EEEECCCc-------HHHHHHHHHHCChHH------------HHHHHH-HcCCEEEEECHHHHhhc
Confidence 55566642 466777777765431 123333 56899999998876553
No 457
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Probab=23.63 E-value=76 Score=35.77 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=26.3
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
+.+++|+|.|.|..|..++..+++.+|+++
T Consensus 10 ~~~k~v~IiGAGg~g~~v~~~l~~~~~~~v 39 (220)
T 4ea9_A 10 LAIGGVVIIGGGGHAKVVIESLRACGETVA 39 (220)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred cCCCCEEEEcCCHHHHHHHHHHHhCCCEEE
Confidence 456799999999999999999999888774
No 458
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=23.42 E-value=63 Score=40.08 Aligned_cols=97 Identities=18% Similarity=0.077 Sum_probs=52.5
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||.|+|.|.++..-++++++.+........+++.++++..+. ...-+.|+++ -+ ..-|.|.+.++ ..
T Consensus 28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~----~~a~~~a~~~-~~-----~~~y~d~~~ll---~~ 94 (412)
T 4gqa_A 28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQ----AMAERHAAKL-GA-----EKAYGDWRELV---ND 94 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSH----HHHHHHHHHH-TC-----SEEESSHHHHH---HC
T ss_pred eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCH----HHHHHHHHHc-CC-----CeEECCHHHHh---cC
Confidence 799999999999888998887533221223566676654321 1122233332 11 12456666654 45
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEe
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFL 160 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fi 160 (2267)
..+|+|+...-. ....+++..+.++|..++
T Consensus 95 ~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl 124 (412)
T 4gqa_A 95 PQVDVVDITSPN-HLHYTMAMAAIAAGKHVY 124 (412)
T ss_dssp TTCCEEEECSCG-GGHHHHHHHHHHTTCEEE
T ss_pred CCCCEEEECCCc-HHHHHHHHHHHHcCCCeE
Confidence 678888854211 111223344445565554
No 459
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=23.21 E-value=2.7e+02 Score=35.37 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=50.0
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh-ccEEEEccCCCC
Q 000092 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI-ADQFVEVPGGTN 113 (2267)
Q Consensus 35 ~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~-ADe~v~vp~~~~ 113 (2267)
+.++-...+| ||+.|.+.+..+..+.+.++++|.+++ .+.++.. +. .+-+. .++.+ +
T Consensus 304 ~~d~~~~l~G----krv~i~~~~~~~~~l~~~L~elGm~vv---------~~~~~~~-~~--~~~~~~~~~v~-~----- 361 (458)
T 3pdi_B 304 MLDTHFMLSS----ARTAIAADPDLLLGFDALLRSMGAHTV---------AAVVPAR-AA--ALVDSPLPSVR-V----- 361 (458)
T ss_dssp HHHHHHHHTT----CEEEEECCHHHHHHHHHHHHTTTCEEE---------EEEESSC-CS--CCTTTTSSCEE-E-----
T ss_pred HHHHHHhcCC----CEEEEECCcHHHHHHHHHHHHCCCEEE---------EEEECCC-Ch--hhhhCccCcEE-e-----
Confidence 3344444444 679999999999999999999998875 3444331 11 11111 22222 2
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeC
Q 000092 114 NNNYANVQLIVEMAEMTRVDAVWPG 138 (2267)
Q Consensus 114 ~~~Y~dvd~Il~iA~~~~vDaV~pG 138 (2267)
.|...+.+.+++.++|.++.+
T Consensus 362 ----~D~~~le~~i~~~~pDllig~ 382 (458)
T 3pdi_B 362 ----GDLEDLEHAARAGQAQLVIGN 382 (458)
T ss_dssp ----SHHHHHHHHHHHHTCSEEEEC
T ss_pred ----CCHHHHHHHHHhcCCCEEEEC
Confidence 355678888889999999854
No 460
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=23.04 E-value=1.1e+02 Score=35.55 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=43.9
Q ss_pred CccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.-+||||.|+ |.++..+++.+.+.|++++ ++ +.. .-+..|.+.+.+
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~-----------~~--~r~--------------------~~Dl~d~~~~~~ 57 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVI-----------PT--DVQ--------------------DLDITNVLAVNK 57 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEE-----------EE--CTT--------------------TCCTTCHHHHHH
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEE-----------ec--cCc--------------------cCCCCCHHHHHH
Confidence 3478999995 9999999999999998875 33 211 014456777878
Q ss_pred HHHHcCCCEEEeCCC
Q 000092 126 MAEMTRVDAVWPGWG 140 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G 140 (2267)
+.+..++|+|+-.-|
T Consensus 58 ~~~~~~~d~vih~A~ 72 (292)
T 1vl0_A 58 FFNEKKPNVVINCAA 72 (292)
T ss_dssp HHHHHCCSEEEECCC
T ss_pred HHHhcCCCEEEECCc
Confidence 777778999985433
No 461
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=23.00 E-value=45 Score=36.52 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=25.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
--.|+|+|.|++++-+...+.+.|++|.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~ 29 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVH 29 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEE
Confidence 3469999999999999999999999874
No 462
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=22.74 E-value=1.4e+02 Score=34.35 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=44.3
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 48 ~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+|+|||.| +|.++..+.+.+.+.|++++ .+..+..... ..--+++.. +..|.+.+.++
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~-----------~~~r~~~~~~---~~~~~~~~~-------Dl~d~~~~~~~ 61 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAEILR-----------LADLSPLDPA---GPNEECVQC-------DLADANAVNAM 61 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEEEEE-----------EEESSCCCCC---CTTEEEEEC-------CTTCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCEEE-----------EEecCCcccc---CCCCEEEEc-------CCCCHHHHHHH
Confidence 57899999 58999999999999988775 2211111111 001123332 34567777777
Q ss_pred HHHcCCCEEEeCCCc
Q 000092 127 AEMTRVDAVWPGWGH 141 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~ 141 (2267)
++ ++|.|+---|.
T Consensus 62 ~~--~~D~vi~~Ag~ 74 (267)
T 3rft_A 62 VA--GCDGIVHLGGI 74 (267)
T ss_dssp HT--TCSEEEECCSC
T ss_pred Hc--CCCEEEECCCC
Confidence 76 68998855444
No 463
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=22.40 E-value=1.2e+02 Score=36.02 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.2
Q ss_pred CCCccEEEEEC-chHHHHHHHHHHHHc
Q 000092 45 KKPIHSILIAN-NGMAAVKFIRSIRTW 70 (2267)
Q Consensus 45 ~~~~kkVLIan-~G~~Av~iIrsaR~l 70 (2267)
|+| -||.|+| .|-.+..+++.+.+.
T Consensus 5 M~m-ikV~V~Ga~G~MG~~i~~~l~~~ 30 (272)
T 4f3y_A 5 MSS-MKIAIAGASGRMGRMLIEAVLAA 30 (272)
T ss_dssp -CC-EEEEESSTTSHHHHHHHHHHHHC
T ss_pred ccc-cEEEEECCCCHHHHHHHHHHHhC
Confidence 444 4799999 899999999998864
No 464
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=22.37 E-value=1.3e+02 Score=36.17 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=50.4
Q ss_pred hcCCCCCccEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh--hccEEEEccCCCCCCCc
Q 000092 41 SLGGKKPIHSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR--IADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 41 ~~~g~~~~kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr--~ADe~v~vp~~~~~~~Y 117 (2267)
+.++-+.-++|||.|. |.++.-+++.++.+|++++ ++..+... ....+ -||..+... .++
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi-----------~~~~~~~~-~~~~~~~ga~~v~~~~-----~~~ 215 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVI-----------AVVNRTAA-TEFVKSVGADIVLPLE-----EGW 215 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-----------EEESSGGG-HHHHHHHTCSEEEESS-----TTH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE-----------EEeCCHHH-HHHHHhcCCcEEecCc-----hhH
Confidence 5566667789999997 9999999999999998775 33222111 11221 255554331 122
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCc
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWGH 141 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G~ 141 (2267)
.+.+.++....++|.|+-..|.
T Consensus 216 --~~~v~~~~~~~g~Dvvid~~g~ 237 (342)
T 4eye_A 216 --AKAVREATGGAGVDMVVDPIGG 237 (342)
T ss_dssp --HHHHHHHTTTSCEEEEEESCC-
T ss_pred --HHHHHHHhCCCCceEEEECCch
Confidence 3445554444579999976553
No 465
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=22.01 E-value=25 Score=44.14 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=24.6
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
.+|+|+|-|..+..+.+.+++.|+.++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vv 31 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMV 31 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 369999999999999999999998875
No 466
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=21.89 E-value=70 Score=38.57 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=47.8
Q ss_pred cCCCCCccEEEEECchHHHHHHHHHHHHcCC-cccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCH
Q 000092 42 LGGKKPIHSILIANNGMAAVKFIRSIRTWAY-ETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 42 ~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~-~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dv 120 (2267)
..+- .-++|||.|.|..+.-+++.++.+|. +++ ++..+...-....++||+.+... ..++ .
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi-----------~~~~~~~~~~~~~~la~~v~~~~----~~~~--~ 221 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPIL-----------VSDPNPYRLAFARPYADRLVNPL----EEDL--L 221 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEE-----------EECSCHHHHGGGTTTCSEEECTT----TSCH--H
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEE-----------EECCCHHHHHHHHHhHHhccCcC----ccCH--H
Confidence 4444 66789999999999999999999998 665 33211111011111266654321 1222 3
Q ss_pred HHHHHHHHHcCCCEEEeCCC
Q 000092 121 QLIVEMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~G 140 (2267)
+.+.++. ..++|.|+-..|
T Consensus 222 ~~~~~~~-~~g~D~vid~~g 240 (343)
T 2dq4_A 222 EVVRRVT-GSGVEVLLEFSG 240 (343)
T ss_dssp HHHHHHH-SSCEEEEEECSC
T ss_pred HHHHHhc-CCCCCEEEECCC
Confidence 4455544 557999996655
No 467
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=21.87 E-value=1.2e+02 Score=38.31 Aligned_cols=87 Identities=10% Similarity=-0.040 Sum_probs=52.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCC--Ch---hhhhccEEEEccCCCCCCCccCHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRIN--AE---HIRIADQFVEVPGGTNNNNYANVQL 122 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~--a~---~vr~ADe~v~vp~~~~~~~Y~dvd~ 122 (2267)
.+||+|+|-|..++.+.+.+++.|++|. .+ |.+.. .+ .++...-.+..+. ...+.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~-----------~~--D~~~~~~~~~~~~L~~~gi~~~~g~--~~~~~----- 68 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVT-----------VN--DGKPFDENPTAQSLLEEGIKVVCGS--HPLEL----- 68 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEE-----------EE--ESSCGGGCHHHHHHHHTTCEEEESC--CCGGG-----
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEE-----------EE--eCCcccCChHHHHHHhCCCEEEECC--ChHHh-----
Confidence 3799999999999999999999999986 33 32211 11 1221122233322 11111
Q ss_pred HHHHHHHcC-CCEEEeCCCcCCCCCchHHHHHHcCCeEeC
Q 000092 123 IVEMAEMTR-VDAVWPGWGHASEIPELPDTLSTKGIIFLG 161 (2267)
Q Consensus 123 Il~iA~~~~-vDaV~pG~G~~sEn~~la~~l~~~GI~fiG 161 (2267)
+ .+ +|.|+..-|....+|++.. ..+.|+++++
T Consensus 69 -~-----~~~~d~vv~spgi~~~~p~~~~-a~~~gi~v~~ 101 (451)
T 3lk7_A 69 -L-----DEDFCYMIKNPGIPYNNPMVKK-ALEKQIPVLT 101 (451)
T ss_dssp -G-----GSCEEEEEECTTSCTTSHHHHH-HHHTTCCEEC
T ss_pred -h-----cCCCCEEEECCcCCCCChhHHH-HHHCCCcEEe
Confidence 1 13 6888877777666766544 4567888873
No 468
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=21.87 E-value=83 Score=37.59 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=51.1
Q ss_pred hcCCCCCccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh--hccEEEEccCCCCCCCc
Q 000092 41 SLGGKKPIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR--IADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 41 ~~~g~~~~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr--~ADe~v~vp~~~~~~~Y 117 (2267)
..++-+.-++|||.| .|..+.-+++.++.+|.+++ ++..+.. .....+ -||+.+... ..++
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi-----------~~~~~~~-~~~~~~~~Ga~~~~~~~----~~~~ 197 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLI-----------GTVSSPE-KAAHAKALGAWETIDYS----HEDV 197 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEE-----------EEESSHH-HHHHHHHHTCSEEEETT----TSCH
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEE-----------EEeCCHH-HHHHHHHcCCCEEEeCC----CccH
Confidence 445666778999999 79999999999999998775 3311111 111111 256655431 1222
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCc
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWGH 141 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G~ 141 (2267)
.+.+.+.....++|.|+-..|.
T Consensus 198 --~~~~~~~~~~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 198 --AKRVLELTDGKKCPVVYDGVGQ 219 (325)
T ss_dssp --HHHHHHHTTTCCEEEEEESSCG
T ss_pred --HHHHHHHhCCCCceEEEECCCh
Confidence 4555555555579999976554
No 469
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=21.84 E-value=1.3e+02 Score=34.67 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=22.8
Q ss_pred EEEEECc-hHHHHHHHHHHHHc-CCccc
Q 000092 50 SILIANN-GMAAVKFIRSIRTW-AYETF 75 (2267)
Q Consensus 50 kVLIan~-G~~Av~iIrsaR~l-G~~v~ 75 (2267)
||||.|. |.++..+++.+.+. |++++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~ 29 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFH 29 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEE
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEE
Confidence 5999994 99999999999988 88875
No 470
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=21.80 E-value=55 Score=37.72 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=26.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
|+.+|+|+|+|.+++.+...+++.|+++.
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~ 29 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNIL 29 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEE
Confidence 45799999999999999999999998764
No 471
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=21.48 E-value=1.3e+02 Score=35.20 Aligned_cols=71 Identities=8% Similarity=0.056 Sum_probs=43.3
Q ss_pred EEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||.|. |.++..+++.+.+.|++++ ++ +.......-...+....+.. +..|.+.+.++.+
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~-----------~~--~r~~~~~~~~~~~~~~~~~~-----Dl~~~~~~~~~~~ 63 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARGLEVA-----------VL--DNLATGKRENVPKGVPFFRV-----DLRDKEGVERAFR 63 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEE-----------EE--CCCSSCCGGGSCTTCCEECC-----CTTCHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEE-----------EE--ECCCcCchhhcccCeEEEEC-----CCCCHHHHHHHHH
Confidence 7999995 9999999999999998875 22 11111000011111111111 3456777777777
Q ss_pred HcCCCEEEeC
Q 000092 129 MTRVDAVWPG 138 (2267)
Q Consensus 129 ~~~vDaV~pG 138 (2267)
+.++|.|+-.
T Consensus 64 ~~~~d~vi~~ 73 (311)
T 2p5y_A 64 EFRPTHVSHQ 73 (311)
T ss_dssp HHCCSEEEEC
T ss_pred hcCCCEEEEC
Confidence 7789998854
No 472
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=21.24 E-value=1.6e+02 Score=37.27 Aligned_cols=152 Identities=13% Similarity=0.049 Sum_probs=83.4
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh--c--cEEEE------ccC---CCCCC
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI--A--DQFVE------VPG---GTNNN 115 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~--A--De~v~------vp~---~~~~~ 115 (2267)
-||.|+|.|.++...++.+.+. .+++.++++... .+......+. - +.... ++. .....
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~--------~~veLvAV~D~~-~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~ 94 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM--------QGIEVGALSARR-LPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIA 94 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS--------SSEEEEEEECSS-THHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEE
T ss_pred eEEEEECChHHHHHHHHHHhhC--------CCcEEEEEEeCC-HHHHHHHHHHhcCCccccccccchhhhhhhhccCCce
Confidence 4799999999999888887653 256667665422 1110011110 1 00000 000 00011
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
-|.|.+.++ ....+|+|+-..+......++...+.++|..++.-+.+.. ...=..+..+++++|+..-.-.+.
T Consensus 95 v~~D~eeLL---~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~--~~eg~eL~~~A~e~Gvvl~~~~gd-- 167 (446)
T 3upl_A 95 VTDDNDLIL---SNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEAD--VTIGPYLKAQADKQGVIYSLGAGD-- 167 (446)
T ss_dssp EESCHHHHH---TCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHH--HHHHHHHHHHHHHHTCCEEECTTS--
T ss_pred EECCHHHHh---cCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccC--HHHHHHHHHHHHHhCCeeeecCCc--
Confidence 345555554 4567999995533221123355666678888874333322 223357778899999875443330
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMI 235 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVI 235 (2267)
.....-++.++++..||.++.
T Consensus 168 -------------------qp~~~~eLv~~a~~~G~~~v~ 188 (446)
T 3upl_A 168 -------------------EPSSCMELIEFVSALGYEVVS 188 (446)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCEEEE
T ss_pred -------------------chHHHHHHHHHHHhCCCeEEE
Confidence 012356788889999998764
No 473
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=21.19 E-value=96 Score=37.65 Aligned_cols=27 Identities=4% Similarity=0.337 Sum_probs=24.2
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcC-Cccc
Q 000092 49 HSILIANN-GMAAVKFIRSIRTWA-YETF 75 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~lG-~~v~ 75 (2267)
++|||.|. |.++..+++.+.+.| ++|+
T Consensus 33 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~ 61 (377)
T 2q1s_A 33 TNVMVVGGAGFVGSNLVKRLLELGVNQVH 61 (377)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCceEE
Confidence 58999995 999999999999999 8875
No 474
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=21.14 E-value=2.6e+02 Score=33.55 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=39.1
Q ss_pred cEEEEECchHHHH-HHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 49 HSILIANNGMAAV-KFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 49 kkVLIan~G~~Av-~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
-||.|+|.|.++. ..++++++.. +++.++++.. ++.. . +...|.|.+.+++
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~~--------~~~lvav~d~---~~~~------------~---g~~~~~~~~~ll~-- 77 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKNA--------NFKLVATASR---HGTV------------E---GVNSYTTIEAMLD-- 77 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHCT--------TEEEEEEECS---SCCC------------T---TSEEESSHHHHHH--
T ss_pred ceEEEEecCHHHHHHHHHHHHhCC--------CeEEEEEEeC---Chhh------------c---CCCccCCHHHHHh--
Confidence 3899999999998 6889888762 3455665542 2211 1 1124666666654
Q ss_pred HH-cCCCEEEeC
Q 000092 128 EM-TRVDAVWPG 138 (2267)
Q Consensus 128 ~~-~~vDaV~pG 138 (2267)
. ..+|+|+..
T Consensus 78 -~~~~vD~V~i~ 88 (330)
T 4ew6_A 78 -AEPSIDAVSLC 88 (330)
T ss_dssp -HCTTCCEEEEC
T ss_pred -CCCCCCEEEEe
Confidence 4 578998854
No 475
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=21.13 E-value=1e+02 Score=38.06 Aligned_cols=83 Identities=12% Similarity=0.190 Sum_probs=50.1
Q ss_pred CCCCCccEEEEECchHHHHHHHHHHHHcCC-cccccccceeEEEEEeccCCCCCChhhh-hccEEEEccCCCCCCCccCH
Q 000092 43 GGKKPIHSILIANNGMAAVKFIRSIRTWAY-ETFGTEKAILLVAMATPEDMRINAEHIR-IADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 43 ~g~~~~kkVLIan~G~~Av~iIrsaR~lG~-~v~~~~~~i~~v~~~t~~D~~~~a~~vr-~ADe~v~vp~~~~~~~Y~dv 120 (2267)
++-+.-++|||.|.|..+.-+++.+|.+|. +++ ++..+........+ -||+.+.. ...++ .
T Consensus 209 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi-----------~~~~~~~~~~~~~~lGa~~vi~~----~~~~~--~ 271 (404)
T 3ip1_A 209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVI-----------LSEPSEVRRNLAKELGADHVIDP----TKENF--V 271 (404)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEE-----------EECSCHHHHHHHHHHTCSEEECT----TTSCH--H
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE-----------EECCCHHHHHHHHHcCCCEEEcC----CCCCH--H
Confidence 356667899999999999999999999998 443 34111111111111 15655432 11222 4
Q ss_pred HHHHHHHHHcCCCEEEeCCCcC
Q 000092 121 QLIVEMAEMTRVDAVWPGWGHA 142 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~G~~ 142 (2267)
+.+.++....++|.|+-..|..
T Consensus 272 ~~i~~~t~g~g~D~vid~~g~~ 293 (404)
T 3ip1_A 272 EAVLDYTNGLGAKLFLEATGVP 293 (404)
T ss_dssp HHHHHHTTTCCCSEEEECSSCH
T ss_pred HHHHHHhCCCCCCEEEECCCCc
Confidence 5566655556799999765543
No 476
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=21.12 E-value=3.9e+02 Score=32.87 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=34.6
Q ss_pred hHHHHHHhcCC-CCCccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 34 EVDEFCRSLGG-KKPIHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 34 ~~~~~~~~~~g-~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
.+++.++..|- .-.-|+|.|.|-|..+..+++.++++|.+++
T Consensus 160 ~~~~~~~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVv 202 (355)
T 1c1d_A 160 AMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLL 202 (355)
T ss_dssp HHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhcCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE
Confidence 46777777754 3345899999999999999999999998774
No 477
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=20.97 E-value=51 Score=38.23 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCccc
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETF 75 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~ 75 (2267)
++||||.|.|.++..+++.+.+.|++++
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~ 30 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVT 30 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 3689999999999999999999999886
No 478
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=20.93 E-value=2.4e+02 Score=32.09 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=49.6
Q ss_pred EEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccE----EEEccCCCCCCCccC----HHH
Q 000092 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ----FVEVPGGTNNNNYAN----VQL 122 (2267)
Q Consensus 51 VLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe----~v~vp~~~~~~~Y~d----vd~ 122 (2267)
||+.|+|.....++.++++-++ ..+.++|++ + .+++.....|.+ ++.++. .+|.+ -+.
T Consensus 12 vl~SG~gsnl~all~~~~~~~l-------~~~I~~Vis--n-~~~a~~l~~A~~~gIp~~~~~~----~~~~~r~~~d~~ 77 (209)
T 4ds3_A 12 IFISGGGSNMEALIRAAQAPGF-------PAEIVAVFS--D-KAEAGGLAKAEAAGIATQVFKR----KDFASKEAHEDA 77 (209)
T ss_dssp EEESSCCHHHHHHHHHHTSTTC-------SEEEEEEEE--S-CTTCTHHHHHHHTTCCEEECCG----GGSSSHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHcCCC-------CcEEEEEEE--C-CcccHHHHHHHHcCCCEEEeCc----cccCCHHHHHHH
Confidence 6788999999999999875432 234566666 3 234555556654 344432 23333 267
Q ss_pred HHHHHHHcCCCEEE-eCCCc
Q 000092 123 IVEMAEMTRVDAVW-PGWGH 141 (2267)
Q Consensus 123 Il~iA~~~~vDaV~-pG~G~ 141 (2267)
+++..++.++|.|+ .||+.
T Consensus 78 ~~~~l~~~~~Dliv~agy~~ 97 (209)
T 4ds3_A 78 ILAALDVLKPDIICLAGYMR 97 (209)
T ss_dssp HHHHHHHHCCSEEEESSCCS
T ss_pred HHHHHHhcCCCEEEEecccc
Confidence 88999999999766 56653
No 479
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=20.74 E-value=91 Score=37.34 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=51.3
Q ss_pred HhcCCCCCccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh--hccEEEEccCCCCCCC
Q 000092 40 RSLGGKKPIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR--IADQFVEVPGGTNNNN 116 (2267)
Q Consensus 40 ~~~~g~~~~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr--~ADe~v~vp~~~~~~~ 116 (2267)
.+.++-+.-++|||.| .|.++.-+++.++.+|.+++ ++..+... ....+ -||..+... ..+
T Consensus 141 ~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi-----------~~~~~~~~-~~~~~~~ga~~~~~~~----~~~ 204 (334)
T 3qwb_A 141 NEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTI-----------AVASTDEK-LKIAKEYGAEYLINAS----KED 204 (334)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEE-----------EEESSHHH-HHHHHHTTCSEEEETT----TSC
T ss_pred HHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-----------EEeCCHHH-HHHHHHcCCcEEEeCC----Cch
Confidence 3445666778999999 79999999999999998775 33211111 11111 145554331 122
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCc
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWGH 141 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G~ 141 (2267)
+ .+.+.++....++|.|+-..|.
T Consensus 205 ~--~~~~~~~~~~~g~D~vid~~g~ 227 (334)
T 3qwb_A 205 I--LRQVLKFTNGKGVDASFDSVGK 227 (334)
T ss_dssp H--HHHHHHHTTTSCEEEEEECCGG
T ss_pred H--HHHHHHHhCCCCceEEEECCCh
Confidence 2 4555555555578999976664
No 480
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.72 E-value=33 Score=37.42 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=24.8
Q ss_pred cEEEEECchHHHHHHHHHHHHc-CCccc
Q 000092 49 HSILIANNGMAAVKFIRSIRTW-AYETF 75 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~l-G~~v~ 75 (2267)
.+|+|+|.|..+..+++.+++. |++++
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~ 67 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISL 67 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEE
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEE
Confidence 4799999999999999999999 98875
No 481
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=20.46 E-value=1.6e+02 Score=35.26 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=49.9
Q ss_pred hcCCCCCccEEEEECch-HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh--hccEEEEccCCCCCCCc
Q 000092 41 SLGGKKPIHSILIANNG-MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR--IADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 41 ~~~g~~~~kkVLIan~G-~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr--~ADe~v~vp~~~~~~~Y 117 (2267)
+..+-+.-++|||.|.| .++.-+++.++.+|.+++ ++..+. ......+ -||..+... ..++
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi-----------~~~~~~-~~~~~~~~lga~~~~~~~----~~~~ 201 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLI-----------AVTRNN-KHTEELLRLGAAYVIDTS----TAPL 201 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEE-----------EEESSS-TTHHHHHHHTCSEEEETT----TSCH
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEE-----------EEeCCH-HHHHHHHhCCCcEEEeCC----cccH
Confidence 45566677899999976 899999999999998775 331111 1112222 245554321 1122
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWG 140 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G 140 (2267)
.+.+.++....++|.|+-..|
T Consensus 202 --~~~~~~~~~~~g~Dvvid~~g 222 (340)
T 3gms_A 202 --YETVMELTNGIGADAAIDSIG 222 (340)
T ss_dssp --HHHHHHHTTTSCEEEEEESSC
T ss_pred --HHHHHHHhCCCCCcEEEECCC
Confidence 455555555557899986655
No 482
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=20.38 E-value=1.4e+02 Score=34.87 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=43.9
Q ss_pred cEEEEECc-hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 49 HSILIANN-GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 49 kkVLIan~-G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
+||||.|. |.++..+++.+.+.|++++ ++ +... .-+..|.+.+.+++
T Consensus 4 ~~ilVtGatG~iG~~l~~~L~~~g~~v~-----------~~--~r~~-------------------~~D~~d~~~~~~~~ 51 (321)
T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQRGDVEL-----------VL--RTRD-------------------ELNLLDSRAVHDFF 51 (321)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEE-----------EC--CCTT-------------------TCCTTCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEE-----------EE--ecCc-------------------cCCccCHHHHHHHH
Confidence 58999995 9999999999999998764 33 1110 01456678888888
Q ss_pred HHcCCCEEEeCCC
Q 000092 128 EMTRVDAVWPGWG 140 (2267)
Q Consensus 128 ~~~~vDaV~pG~G 140 (2267)
+..++|+|+-.-+
T Consensus 52 ~~~~~d~vih~a~ 64 (321)
T 1e6u_A 52 ASERIDQVYLAAA 64 (321)
T ss_dssp HHHCCSEEEECCC
T ss_pred HhcCCCEEEEcCe
Confidence 8778999985433
No 483
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=20.38 E-value=53 Score=41.77 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=33.1
Q ss_pred hhhHHHHHHhcCCC-CCccEEEEECchHHHHHHHHHHHHcCCcc
Q 000092 32 MSEVDEFCRSLGGK-KPIHSILIANNGMAAVKFIRSIRTWAYET 74 (2267)
Q Consensus 32 ~~~~~~~~~~~~g~-~~~kkVLIan~G~~Av~iIrsaR~lG~~v 74 (2267)
...+.++.+.+|.. +..++|+|+|+|.++..+.+.+.+ ++.+
T Consensus 218 ~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v 260 (461)
T 4g65_A 218 SNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSV 260 (461)
T ss_dssp TTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEE
T ss_pred cchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCce
Confidence 35678888888764 468999999999999999998854 3443
No 484
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=20.32 E-value=2.5e+02 Score=31.88 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=49.1
Q ss_pred cEE--EEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccE----EEEccCCCCCCCccC---
Q 000092 49 HSI--LIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ----FVEVPGGTNNNNYAN--- 119 (2267)
Q Consensus 49 kkV--LIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe----~v~vp~~~~~~~Y~d--- 119 (2267)
+|| |+.|+|..+..+++++.+-.+ +.+.++|++.. ++++....|.+ ++.++. .+|.+
T Consensus 4 ~ki~vl~sG~g~~~~~~l~~l~~~~l-------~~~I~~Vit~~---~~~~v~~~A~~~gIp~~~~~~----~~~~~~~~ 69 (212)
T 3av3_A 4 KRLAVFASGSGTNFQAIVDAAKRGDL-------PARVALLVCDR---PGAKVIERAARENVPAFVFSP----KDYPSKAA 69 (212)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHTTCC-------CEEEEEEEESS---TTCHHHHHHHHTTCCEEECCG----GGSSSHHH
T ss_pred cEEEEEEECCcHHHHHHHHHHHhCCC-------CCeEEEEEeCC---CCcHHHHHHHHcCCCEEEeCc----ccccchhh
Confidence 465 556999999999999886521 23445666632 34566666654 333322 23333
Q ss_pred -HHHHHHHHHHcCCCEEE-eCCCc
Q 000092 120 -VQLIVEMAEMTRVDAVW-PGWGH 141 (2267)
Q Consensus 120 -vd~Il~iA~~~~vDaV~-pG~G~ 141 (2267)
-+.+++..++.++|.|+ .||+.
T Consensus 70 ~~~~~~~~l~~~~~Dliv~a~y~~ 93 (212)
T 3av3_A 70 FESEILRELKGRQIDWIALAGYMR 93 (212)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCCS
T ss_pred hHHHHHHHHHhcCCCEEEEchhhh
Confidence 34788889999999766 55553
Done!