Query 000094
Match_columns 2264
No_of_seqs 354 out of 1515
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 17:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00121 MAEBL; Provisional 98.6 9.9E-07 2.1E-11 115.5 18.7 10 82-91 603-612 (2084)
2 PF07001 BAT2_N: BAT2 N-termin 98.6 1.4E-07 3.1E-12 104.9 9.6 73 8-119 16-88 (189)
3 PTZ00121 MAEBL; Provisional 98.5 2.7E-06 5.9E-11 111.6 18.2 8 318-325 832-839 (2084)
4 KOG1029 Endocytic adaptor prot 98.5 4.3E-06 9.2E-11 105.2 17.9 14 872-885 726-739 (1118)
5 PTZ00266 NIMA-related protein 98.1 3.4E-05 7.3E-10 102.8 15.9 15 52-66 25-39 (1021)
6 KOG1029 Endocytic adaptor prot 98.1 7.8E-05 1.7E-09 94.4 17.6 24 561-584 312-338 (1118)
7 PTZ00266 NIMA-related protein 98.1 3.5E-05 7.5E-10 102.7 15.2 10 946-955 794-803 (1021)
8 KOG4364 Chromatin assembly fac 97.9 0.00018 3.9E-09 90.5 16.6 18 1272-1289 750-767 (811)
9 KOG2072 Translation initiation 97.9 0.0021 4.5E-08 83.0 24.9 12 763-774 898-909 (988)
10 KOG4364 Chromatin assembly fac 97.8 0.0003 6.6E-09 88.6 15.8 8 1299-1306 745-752 (811)
11 COG3064 TolA Membrane protein 97.8 0.00053 1.1E-08 81.0 15.6 18 548-565 64-81 (387)
12 KOG2891 Surface glycoprotein [ 97.6 0.0017 3.8E-08 75.6 17.4 23 521-543 197-223 (445)
13 KOG0163 Myosin class VI heavy 97.6 0.0018 3.9E-08 82.4 18.2 43 850-895 1214-1256(1259)
14 KOG2891 Surface glycoprotein [ 97.5 0.0039 8.5E-08 72.8 18.5 18 552-569 276-293 (445)
15 PRK09510 tolA cell envelope in 97.4 0.006 1.3E-07 75.1 19.1 15 548-562 64-78 (387)
16 KOG0163 Myosin class VI heavy 97.2 0.0094 2E-07 76.4 17.1 12 469-480 708-719 (1259)
17 COG3064 TolA Membrane protein 97.2 0.0082 1.8E-07 71.4 15.6 9 913-921 362-370 (387)
18 PF05262 Borrelia_P83: Borreli 97.2 0.0063 1.4E-07 76.7 15.7 27 454-482 93-121 (489)
19 KOG1144 Translation initiation 97.0 0.0013 2.8E-08 84.3 8.0 14 1132-1145 730-743 (1064)
20 KOG4661 Hsp27-ERE-TATA-binding 96.9 0.06 1.3E-06 67.8 20.4 56 322-384 355-411 (940)
21 KOG4661 Hsp27-ERE-TATA-binding 96.8 0.0071 1.5E-07 75.5 11.6 18 237-255 257-274 (940)
22 KOG2072 Translation initiation 96.8 0.27 5.8E-06 64.8 25.0 6 738-743 903-908 (988)
23 KOG2412 Nuclear-export-signal 96.8 0.047 1E-06 69.0 18.0 8 834-841 429-436 (591)
24 PF12037 DUF3523: Domain of un 96.3 0.16 3.5E-06 60.6 18.1 6 538-543 27-32 (276)
25 PF05672 MAP7: MAP7 (E-MAP-115 96.2 0.28 6.1E-06 55.3 17.9 36 663-698 118-153 (171)
26 KOG2002 TPR-containing nuclear 95.6 0.052 1.1E-06 72.1 10.5 13 545-557 753-765 (1018)
27 KOG0742 AAA+-type ATPase [Post 95.5 0.45 9.7E-06 59.4 17.2 7 537-543 70-76 (630)
28 KOG0742 AAA+-type ATPase [Post 95.4 0.47 1E-05 59.2 16.9 10 544-553 94-103 (630)
29 PF12037 DUF3523: Domain of un 95.3 1.7 3.6E-05 52.4 20.5 15 503-517 21-35 (276)
30 KOG3054 Uncharacterized conser 94.4 0.26 5.7E-06 57.7 10.8 12 545-556 97-108 (299)
31 PRK12704 phosphodiesterase; Pr 94.2 0.6 1.3E-05 60.2 14.6 6 745-750 220-225 (520)
32 PF09726 Macoilin: Transmembra 94.0 0.98 2.1E-05 60.1 16.2 9 188-196 196-204 (697)
33 KOG3654 Uncharacterized CH dom 94.0 0.27 6E-06 61.7 10.4 20 201-220 115-134 (708)
34 TIGR03319 YmdA_YtgF conserved 93.9 2.7 5.8E-05 54.4 19.3 6 861-866 358-363 (514)
35 PRK00247 putative inner membra 93.3 0.79 1.7E-05 57.9 12.9 7 177-183 39-45 (429)
36 PRK00106 hypothetical protein; 93.0 3 6.5E-05 54.3 17.7 7 861-867 379-385 (535)
37 KOG4817 Unnamed protein [Funct 91.9 2.5 5.5E-05 52.2 14.0 75 8-120 15-89 (468)
38 KOG1103 Predicted coiled-coil 90.3 1.3 2.8E-05 54.1 9.6 87 913-1011 399-491 (561)
39 PRK12705 hypothetical protein; 89.1 20 0.00044 46.8 19.4 7 549-555 23-29 (508)
40 TIGR01069 mutS2 MutS2 family p 87.8 12 0.00026 50.8 17.0 14 277-290 217-230 (771)
41 PRK00409 recombination and DNA 87.6 7.7 0.00017 52.7 15.1 12 277-288 222-233 (782)
42 KOG1265 Phospholipase C [Lipid 87.1 23 0.00049 48.4 18.0 41 318-365 752-794 (1189)
43 PF02029 Caldesmon: Caldesmon; 86.5 2.4 5.1E-05 54.7 9.0 15 875-889 459-473 (492)
44 KOG2689 Predicted ubiquitin re 85.1 7 0.00015 47.3 11.2 14 798-811 249-262 (290)
45 PLN02316 synthase/transferase 84.0 12 0.00026 52.3 14.3 9 267-275 120-128 (1036)
46 KOG0579 Ste20-like serine/thre 83.3 41 0.0009 45.0 17.4 12 346-357 574-585 (1187)
47 PF09731 Mitofilin: Mitochondr 83.2 61 0.0013 42.5 19.6 23 318-342 26-48 (582)
48 KOG4848 Extracellular matrix-a 82.6 76 0.0017 37.3 17.4 13 469-481 71-83 (225)
49 KOG0681 Actin-related protein 81.4 6.5 0.00014 51.0 9.6 18 493-510 184-201 (645)
50 PF06637 PV-1: PV-1 protein (P 81.2 32 0.0007 43.4 14.9 12 751-762 408-419 (442)
51 KOG2507 Ubiquitin regulatory p 81.2 3.7 7.9E-05 51.8 7.3 7 827-833 374-380 (506)
52 KOG0579 Ste20-like serine/thre 81.0 50 0.0011 44.3 17.0 12 182-193 472-483 (1187)
53 KOG0161 Myosin class II heavy 80.7 47 0.001 49.4 18.4 9 185-193 302-310 (1930)
54 KOG3654 Uncharacterized CH dom 80.5 11 0.00023 48.5 10.8 17 75-91 17-33 (708)
55 COG4372 Uncharacterized protei 80.2 1.2E+02 0.0025 38.9 19.0 9 551-559 83-91 (499)
56 KOG1103 Predicted coiled-coil 80.1 47 0.001 41.4 15.6 17 998-1014 413-429 (561)
57 PTZ00491 major vault protein; 79.1 50 0.0011 45.4 16.9 11 150-160 198-208 (850)
58 KOG0980 Actin-binding protein 78.9 2.3E+02 0.005 39.7 22.3 6 528-533 314-319 (980)
59 KOG0994 Extracellular matrix g 78.6 46 0.001 46.7 16.1 64 162-232 1193-1261(1758)
60 KOG0994 Extracellular matrix g 78.2 74 0.0016 44.9 17.7 9 185-193 1247-1255(1758)
61 KOG1265 Phospholipase C [Lipid 77.2 92 0.002 43.2 18.0 18 341-358 740-757 (1189)
62 PF06637 PV-1: PV-1 protein (P 77.0 92 0.002 39.7 16.9 6 475-480 129-134 (442)
63 PRK13428 F0F1 ATP synthase sub 76.4 1E+02 0.0022 39.8 18.1 7 841-847 258-264 (445)
64 KOG1363 Predicted regulator of 75.5 15 0.00032 47.5 10.4 9 501-509 205-213 (460)
65 PF06098 Radial_spoke_3: Radia 74.2 29 0.00062 42.7 11.9 12 336-347 3-14 (291)
66 PTZ00491 major vault protein; 73.3 56 0.0012 45.0 15.1 6 475-480 548-553 (850)
67 KOG2507 Ubiquitin regulatory p 72.4 6.6 0.00014 49.7 6.1 6 861-866 425-430 (506)
68 KOG0288 WD40 repeat protein Ti 71.5 1.1E+02 0.0024 39.4 16.0 16 996-1011 382-397 (459)
69 KOG0982 Centrosomal protein Nu 71.4 1.5E+02 0.0033 38.4 17.1 6 470-475 153-158 (502)
70 PRK04863 mukB cell division pr 69.4 1.6E+02 0.0035 43.5 19.0 11 1288-1298 830-840 (1486)
71 KOG0161 Myosin class II heavy 68.4 1.6E+02 0.0035 44.3 18.7 11 524-534 816-826 (1930)
72 KOG2668 Flotillins [Intracellu 66.9 1.8E+02 0.0039 37.0 16.2 7 470-476 140-146 (428)
73 PRK12472 hypothetical protein; 66.5 68 0.0015 41.9 13.1 10 469-478 122-131 (508)
74 PRK04863 mukB cell division pr 65.5 89 0.0019 45.9 15.5 40 836-876 727-768 (1486)
75 KOG0976 Rho/Rac1-interacting s 65.4 2.2E+02 0.0047 39.4 17.3 26 1062-1087 813-840 (1265)
76 PRK12472 hypothetical protein; 65.2 1.1E+02 0.0025 40.1 14.6 11 526-536 166-176 (508)
77 PF04094 DUF390: Protein of un 65.0 2E+02 0.0044 39.4 17.1 18 843-860 792-809 (828)
78 KOG0933 Structural maintenance 65.0 2.8E+02 0.006 39.5 18.6 28 530-557 653-682 (1174)
79 PF10168 Nup88: Nuclear pore c 64.7 1.1E+02 0.0024 41.9 15.4 11 81-91 83-93 (717)
80 TIGR02680 conserved hypothetic 64.4 1.6E+02 0.0035 43.0 17.6 7 349-355 33-39 (1353)
81 TIGR02680 conserved hypothetic 62.9 1.9E+02 0.004 42.4 17.8 11 834-844 608-618 (1353)
82 KOG0681 Actin-related protein 62.2 46 0.001 43.8 10.6 6 281-286 23-28 (645)
83 PF05667 DUF812: Protein of un 61.3 2.5E+02 0.0054 38.0 17.3 9 187-195 47-55 (594)
84 KOG3859 Septins (P-loop GTPase 61.2 1.3E+02 0.0029 37.3 13.5 7 327-333 71-77 (406)
85 KOG4722 Zn-finger protein [Gen 60.6 1.8E+02 0.004 37.4 14.9 17 189-205 82-98 (672)
86 TIGR02169 SMC_prok_A chromosom 60.4 3.3E+02 0.007 38.2 19.0 7 780-786 574-580 (1164)
87 KOG4673 Transcription factor T 60.3 3.6E+02 0.0077 37.1 17.8 21 1078-1098 893-913 (961)
88 KOG0996 Structural maintenance 59.5 2.2E+02 0.0049 40.8 16.6 8 809-816 616-623 (1293)
89 KOG4403 Cell surface glycoprot 59.3 2.4E+02 0.0053 36.7 15.6 7 398-404 77-83 (575)
90 PF06936 Selenoprotein_S: Sele 57.0 62 0.0013 37.9 9.7 10 471-480 32-41 (190)
91 KOG0249 LAR-interacting protei 56.5 1.5E+02 0.0033 40.4 13.8 12 912-923 440-451 (916)
92 KOG4572 Predicted DNA-binding 55.8 2.5E+02 0.0055 38.8 15.6 15 69-84 229-243 (1424)
93 PF04094 DUF390: Protein of un 55.7 3.5E+02 0.0075 37.4 16.8 9 547-555 440-448 (828)
94 KOG2441 mRNA splicing factor/p 55.1 17 0.00037 45.8 5.2 8 258-265 54-61 (506)
95 KOG3756 Pinin (desmosome-assoc 54.3 5.6E+02 0.012 32.5 17.7 13 376-388 53-65 (340)
96 KOG0288 WD40 repeat protein Ti 53.6 4.9E+02 0.011 34.1 17.0 8 1004-1011 354-361 (459)
97 KOG0976 Rho/Rac1-interacting s 51.2 6.1E+02 0.013 35.6 17.8 13 1534-1546 1197-1209(1265)
98 KOG0612 Rho-associated, coiled 50.1 2.5E+02 0.0054 40.5 14.9 11 1290-1300 1191-1201(1317)
99 KOG0249 LAR-interacting protei 49.9 2.2E+02 0.0048 39.0 13.8 11 1494-1504 824-834 (916)
100 PRK03918 chromosome segregatio 48.7 7.5E+02 0.016 34.2 19.3 8 348-355 31-38 (880)
101 PLN02316 synthase/transferase 47.7 73 0.0016 45.2 9.8 10 1810-1819 975-984 (1036)
102 KOG0577 Serine/threonine prote 47.7 4.9E+02 0.011 35.7 16.1 13 262-274 211-223 (948)
103 KOG2441 mRNA splicing factor/p 46.2 90 0.0019 39.9 9.2 7 473-479 172-178 (506)
104 KOG3915 Transcription regulato 46.0 1.4E+02 0.003 39.0 10.8 20 36-55 71-90 (641)
105 KOG3915 Transcription regulato 45.4 1.7E+02 0.0037 38.2 11.4 8 177-184 178-185 (641)
106 PF15359 CDV3: Carnitine defic 44.6 54 0.0012 36.3 6.4 62 117-193 60-123 (129)
107 KOG0996 Structural maintenance 43.6 6.7E+02 0.015 36.6 17.2 7 715-721 550-556 (1293)
108 COG4499 Predicted membrane pro 41.7 55 0.0012 41.7 6.6 11 547-557 346-356 (434)
109 KOG0804 Cytoplasmic Zn-finger 41.2 8.3E+02 0.018 32.5 16.4 10 376-385 235-244 (493)
110 COG5269 ZUO1 Ribosome-associat 40.4 2.7E+02 0.0059 34.5 11.6 15 269-283 14-28 (379)
111 KOG0612 Rho-associated, coiled 40.3 9.9E+02 0.022 35.2 18.1 15 56-70 91-105 (1317)
112 PLN03188 kinesin-12 family pro 40.3 7E+02 0.015 36.8 16.8 19 408-426 672-690 (1320)
113 KOG0250 DNA repair protein RAD 39.6 8.5E+02 0.018 35.3 17.3 15 280-295 497-512 (1074)
114 KOG3598 Thyroid hormone recept 39.2 76 0.0017 45.7 7.8 14 376-389 1924-1937(2220)
115 KOG2129 Uncharacterized conser 38.9 1.1E+03 0.023 31.3 16.7 18 876-893 483-500 (552)
116 KOG1425 Microfibrillar-associa 36.0 1.7E+02 0.0036 37.3 9.3 13 304-316 51-63 (430)
117 KOG4572 Predicted DNA-binding 35.7 8.5E+02 0.018 34.3 15.7 7 291-297 511-517 (1424)
118 KOG0250 DNA repair protein RAD 35.5 1.3E+03 0.028 33.6 18.1 17 404-420 85-101 (1074)
119 KOG0345 ATP-dependent RNA heli 34.5 1.8E+02 0.0038 38.5 9.5 14 374-387 350-363 (567)
120 KOG3973 Uncharacterized conser 34.5 65 0.0014 40.5 5.6 58 71-128 310-394 (465)
121 KOG2894 Uncharacterized conser 33.8 7.5E+02 0.016 31.1 13.8 9 735-743 150-158 (331)
122 PF03154 Atrophin-1: Atrophin- 33.8 23 0.00049 48.9 2.0 8 1130-1137 873-880 (982)
123 PRK02292 V-type ATP synthase s 33.6 5.6E+02 0.012 29.2 12.4 85 565-649 8-92 (188)
124 KOG2505 Ankyrin repeat protein 32.8 1.8E+02 0.0039 38.5 9.1 9 347-355 254-262 (591)
125 KOG3598 Thyroid hormone recept 31.2 1.1E+02 0.0024 44.3 7.3 18 465-482 2032-2049(2220)
126 KOG0345 ATP-dependent RNA heli 30.5 2.1E+02 0.0046 37.8 9.2 6 310-315 171-176 (567)
127 PF12004 DUF3498: Domain of un 29.0 18 0.0004 47.0 0.0 8 379-386 236-243 (495)
128 KOG0971 Microtubule-associated 28.8 1.7E+03 0.037 32.2 17.0 126 548-677 233-358 (1243)
129 PF00901 Orbi_VP5: Orbivirus o 28.4 1.6E+03 0.035 30.3 16.9 11 539-549 78-88 (508)
130 KOG0933 Structural maintenance 28.0 2E+03 0.044 31.8 17.7 15 495-509 662-676 (1174)
131 PLN03188 kinesin-12 family pro 27.7 1.7E+03 0.037 33.2 17.4 12 70-81 65-76 (1320)
132 PRK10929 putative mechanosensi 26.6 2E+03 0.043 32.2 18.1 16 1658-1673 1063-1078(1109)
133 KOG3973 Uncharacterized conser 26.1 47 0.001 41.7 2.6 19 36-54 441-459 (465)
134 PRK10361 DNA recombination pro 26.0 1.7E+03 0.038 29.8 18.9 15 714-728 200-216 (475)
135 PF15295 CCDC50_N: Coiled-coil 25.7 9.1E+02 0.02 27.5 11.8 74 598-671 57-130 (132)
136 PF15066 CAGE1: Cancer-associa 25.1 1.8E+03 0.039 29.7 18.4 36 185-220 20-57 (527)
137 PF04615 Utp14: Utp14 protein; 25.1 7.8E+02 0.017 34.0 13.7 47 1100-1146 585-633 (735)
138 COG0419 SbcC ATPase involved i 24.4 2.2E+03 0.048 30.5 19.1 7 349-355 34-40 (908)
139 KOG3878 Protein involved in ma 23.7 2.1E+02 0.0045 36.2 7.2 13 909-921 403-415 (469)
140 KOG0979 Structural maintenance 23.5 2.2E+03 0.048 31.4 17.0 16 186-201 348-363 (1072)
141 PHA00727 hypothetical protein 23.4 3.7E+02 0.0079 32.0 8.7 6 829-834 172-177 (278)
142 KOG2008 BTK-associated SH3-dom 23.2 1.7E+03 0.036 28.7 16.6 11 774-784 272-282 (426)
143 KOG0717 Molecular chaperone (D 22.8 1.1E+03 0.023 31.7 13.2 8 469-476 69-76 (508)
144 PF07415 Herpes_LMP2: Gammaher 22.8 29 0.00063 43.4 0.1 41 93-133 14-54 (489)
145 KOG2505 Ankyrin repeat protein 22.4 3.6E+02 0.0077 36.0 9.1 8 490-497 306-313 (591)
146 KOG0388 SNF2 family DNA-depend 21.7 6.4E+02 0.014 35.2 11.3 16 116-131 72-87 (1185)
147 KOG1150 Predicted molecular ch 21.7 1.3E+03 0.029 28.0 12.7 109 544-652 93-211 (250)
148 PRK01005 V-type ATP synthase s 21.5 1.2E+03 0.027 27.8 12.7 97 611-707 7-103 (207)
149 KOG0979 Structural maintenance 20.2 2.4E+03 0.053 31.0 16.4 17 894-910 574-591 (1072)
No 1
>PTZ00121 MAEBL; Provisional
Probab=98.60 E-value=9.9e-07 Score=115.47 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=6.2
Q ss_pred cccccccccC
Q 000094 82 SLRKEHERFD 91 (2264)
Q Consensus 82 slrkeh~~~d 91 (2264)
---+.-+|||
T Consensus 603 pq~~~m~rfd 612 (2084)
T PTZ00121 603 PQQKFMERFD 612 (2084)
T ss_pred cHHHHHHhcC
Confidence 3456667777
No 2
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.59 E-value=1.4e-07 Score=104.91 Aligned_cols=73 Identities=34% Similarity=0.542 Sum_probs=50.5
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000094 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2264)
Q Consensus 8 ~k~~svnln~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2264)
.||.++|||..|--.+.--+ -....-..||.+|++= +.. --||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~q------------------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEPQ------------------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCccccc------------------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 38999999999933332100 0122236799999982 111 1289999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000094 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWT 119 (2264)
Q Consensus 88 ~~~ds~g~~~~~~~~~~~g~~~~p~~sg~gwt 119 (2264)
.++| |+...|+.. |.||+
T Consensus 71 ~GnD-------pnv~lVP~~-------GsGWa 88 (189)
T PF07001_consen 71 KGND-------PNVSLVPKG-------GSGWA 88 (189)
T ss_pred cCCC-------CCceeecCC-------CcCcc
Confidence 9999 776655543 46998
No 3
>PTZ00121 MAEBL; Provisional
Probab=98.49 E-value=2.7e-06 Score=111.62 Aligned_cols=8 Identities=38% Similarity=0.704 Sum_probs=4.0
Q ss_pred ccccCCCC
Q 000094 318 AYWEGDFD 325 (2264)
Q Consensus 318 ~~w~~~fd 325 (2264)
+.|+.+|+
T Consensus 832 pC~e~~~~ 839 (2084)
T PTZ00121 832 PCLEGSFG 839 (2084)
T ss_pred ccCCCCCC
Confidence 44555544
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=4.3e-06 Score=105.21 Aligned_cols=14 Identities=36% Similarity=0.874 Sum_probs=8.7
Q ss_pred CCccccCCCCCCCC
Q 000094 872 GDVGWGQGRYRGNV 885 (2264)
Q Consensus 872 gd~~W~~s~s~grp 885 (2264)
++.||+.+.-++..
T Consensus 726 aEPGWlaGel~gkt 739 (1118)
T KOG1029|consen 726 AEPGWLAGELRGKT 739 (1118)
T ss_pred CCcccccceecccc
Confidence 66677776665543
No 5
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.10 E-value=3.4e-05 Score=102.82 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.8
Q ss_pred CCceEEeeccCcccc
Q 000094 52 GGGMLVLSRPRSSQK 66 (2264)
Q Consensus 52 ~ggm~vlsr~r~~~~ 66 (2264)
+=|.|.|.+.+.+..
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 345677777665543
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=7.8e-05 Score=94.44 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=12.1
Q ss_pred ccccCccchhhH---HHHHHHHHHHHH
Q 000094 561 TDFHDPVRESFE---AELERVQKMQEQ 584 (2264)
Q Consensus 561 aEeEEk~REEeE---rELERreeeEEE 584 (2264)
..||+++++.++ +|++++++..++
T Consensus 312 ~TFEDKrkeNy~kGqaELerRRq~lee 338 (1118)
T KOG1029|consen 312 VTFEDKRKENYEKGQAELERRRQALEE 338 (1118)
T ss_pred cchhhhhHHhHhhhhHHHHHHHHHHHH
Confidence 345555555554 555544444333
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.07 E-value=3.5e-05 Score=102.70 Aligned_cols=10 Identities=40% Similarity=0.262 Sum_probs=4.1
Q ss_pred cccccccccc
Q 000094 946 NEVEYNRLLR 955 (2264)
Q Consensus 946 ~~~~~~~~~r 955 (2264)
-+..|+|.-+
T Consensus 794 ~~~~~~~~~~ 803 (1021)
T PTZ00266 794 YERVYNHGNR 803 (1021)
T ss_pred hhccccCCcc
Confidence 3444444333
No 8
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.93 E-value=0.00018 Score=90.50 Aligned_cols=18 Identities=28% Similarity=0.115 Sum_probs=9.6
Q ss_pred CCCcceEEEeecccCCCC
Q 000094 1272 QAETPVKLQFGLFSGPSL 1289 (2264)
Q Consensus 1272 ~~e~pv~lqFGlfsGpsL 1289 (2264)
++.++|+-|+-.--|++-
T Consensus 750 ~~~lqv~~qw~y~l~~~~ 767 (811)
T KOG4364|consen 750 DSRLQVKKQWLYKLGLSP 767 (811)
T ss_pred cccccccceeeeeecCCC
Confidence 345566666655555443
No 9
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.0021 Score=83.02 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=7.7
Q ss_pred CCCCCCCccccc
Q 000094 763 RGKPFNSWRRDA 774 (2264)
Q Consensus 763 R~K~~nswRRd~ 774 (2264)
+.-....|+|-.
T Consensus 898 ~a~~~~~WrR~a 909 (988)
T KOG2072|consen 898 RAPEEAEWRRGA 909 (988)
T ss_pred CCCcchHHhhcc
Confidence 334567788776
No 10
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.81 E-value=0.0003 Score=88.58 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=4.0
Q ss_pred eccccCcc
Q 000094 1299 IGSIQMPL 1306 (2264)
Q Consensus 1299 IGSIQmPl 1306 (2264)
|-+.|.|=
T Consensus 745 l~~Fq~~~ 752 (811)
T KOG4364|consen 745 LSDFQDSR 752 (811)
T ss_pred HHhccccc
Confidence 44555553
No 11
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00053 Score=81.01 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=8.1
Q ss_pred hHHHHhhhhhhccccccC
Q 000094 548 VGVVKKKKDVLKQTDFHD 565 (2264)
Q Consensus 548 ~~~vKKKkEeaKqaEeEE 565 (2264)
..+++..++..++.+.++
T Consensus 64 ~~r~q~Q~~~akk~e~~r 81 (387)
T COG3064 64 YGRIQSQQSSAKKGEQQR 81 (387)
T ss_pred HHHHHHHHHHHhhhHHHH
Confidence 344555444444444433
No 12
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.64 E-value=0.0017 Score=75.56 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=12.5
Q ss_pred CCCCCCccccc----CCCCCCCCCCcc
Q 000094 521 EPYQDDPFMKD----FGSSSFDGRDPF 543 (2264)
Q Consensus 521 kpy~ED~~l~D----F~~~s~dgrDpf 543 (2264)
+||.+.|-.+. |...+|+|+--|
T Consensus 197 dplr~~mn~kisgiq~~gfg~g~dlff 223 (445)
T KOG2891|consen 197 DPLREEMNGKISGIQFHGFGFGGDLFF 223 (445)
T ss_pred chhHHHhcCccccceeeccccCcchhH
Confidence 34445554454 566666665555
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.61 E-value=0.0018 Score=82.42 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=29.6
Q ss_pred CCCCCCccccccccccccccccCCccccCCCCCCCCCCCCCCCCCC
Q 000094 850 GDHYGRNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYP 895 (2264)
Q Consensus 850 GD~fGrn~E~DSdf~en~~Er~gd~~W~~s~s~grp~PPy~~RmYq 895 (2264)
+.+-.|..|+-.+-|+..|+|+|+-.+.. -+...|.++..|.|
T Consensus 1214 gL~rKrGAEI~~~eFe~~W~r~Ggk~~~~---~~~a~p~~~~a~~q 1256 (1259)
T KOG0163|consen 1214 GLTRKRGAEILEHEFEREWERNGGKAYKN---LGAAKPNGPAAAMQ 1256 (1259)
T ss_pred ccccccccccChHHHHHHHHHhCcHHhHh---hcccCCCchHHHHh
Confidence 34555677788888888899999887766 34455666655544
No 14
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.54 E-value=0.0039 Score=72.76 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=7.6
Q ss_pred HhhhhhhccccccCccch
Q 000094 552 KKKKDVLKQTDFHDPVRE 569 (2264)
Q Consensus 552 KKKkEeaKqaEeEEk~RE 569 (2264)
.|+.++.++.+-++.+++
T Consensus 276 akraeerrqieterlrqe 293 (445)
T KOG2891|consen 276 AKRAEERRQIETERLRQE 293 (445)
T ss_pred HHHHHHHhhhhHHHHhhh
Confidence 344444444444443333
No 15
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.42 E-value=0.006 Score=75.09 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=6.0
Q ss_pred hHHHHhhhhhhcccc
Q 000094 548 VGVVKKKKDVLKQTD 562 (2264)
Q Consensus 548 ~~~vKKKkEeaKqaE 562 (2264)
...++..+....+.+
T Consensus 64 ~~~~q~q~~~~~~~e 78 (387)
T PRK09510 64 YNRQQQQQKSAKRAE 78 (387)
T ss_pred HHHHHHhHHhHHHHH
Confidence 344444444433333
No 16
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.17 E-value=0.0094 Score=76.35 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=7.1
Q ss_pred ccchhccccccC
Q 000094 469 QYGSEQYNRFRG 480 (2264)
Q Consensus 469 ay~idQynrYrg 480 (2264)
.-|-+.|..|.+
T Consensus 708 ~~F~dLYamYkk 719 (1259)
T KOG0163|consen 708 TSFADLYAMYKK 719 (1259)
T ss_pred ccHHHHHHHHHh
Confidence 345566776655
No 17
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.0082 Score=71.44 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 000094 913 RHPRVLPPP 921 (2264)
Q Consensus 913 rqPrVlPpP 921 (2264)
|+-.||+||
T Consensus 362 k~~kiP~pp 370 (387)
T COG3064 362 KTAKIPKPP 370 (387)
T ss_pred HhccCCCCC
Confidence 444444444
No 18
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=97.17 E-value=0.0063 Score=76.75 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=15.0
Q ss_pred ccccccccccC-CCCcccchhcccc-ccCCc
Q 000094 454 VHSFNSQRAER-NPWEQYGSEQYNR-FRGDA 482 (2264)
Q Consensus 454 msSws~R~~Er-t~DEay~idQynr-YrggA 482 (2264)
+..|++...-. |- +-||-.||= |||+.
T Consensus 93 ~~aygY~~~~a~~l--A~fit~YNAv~R~~~ 121 (489)
T PF05262_consen 93 EAAYGYSDEDAETL--ATFITIYNAVYRGDL 121 (489)
T ss_pred HHhcCCChhhHHHH--HHHHHHHHHHHcCCH
Confidence 45566655544 21 667777772 55543
No 19
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0013 Score=84.30 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=7.6
Q ss_pred cceeeccccceeec
Q 000094 1132 SNLVLGFNEGVEVP 1145 (2264)
Q Consensus 1132 ~~~vlgf~egv~v~ 1145 (2264)
|-+|||=-.|--|+
T Consensus 730 D~IvvcG~~GpIvT 743 (1064)
T KOG1144|consen 730 DQIVVCGLQGPIVT 743 (1064)
T ss_pred CEEEEcCCCCchhH
Confidence 66666554554443
No 20
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.92 E-value=0.06 Score=67.76 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCCCCCCccccccCcCCccccccccccccccC-CCCCcccCCCcCCCCCCcccc
Q 000094 322 GDFDMPRPSVLPHKPAHNVFERWGQRDSETGKVSSSEVARVD-PFGRDIRAPSREGREGNMWRA 384 (2264)
Q Consensus 322 ~~fd~~~~~~~p~k~~~~~~~~~g~r~~e~~k~~~~e~~~~~-~~~~d~~~~~reg~e~nsWr~ 384 (2264)
+-|||---.-||+-|.-+.-. ..-.+|.++++-.+-. +..++ .-+|.+---|+|..
T Consensus 355 rKfdfdAcnevpPapkeSSTs-----egAdqkmSs~~~~~d~k~~~k~--ekgrs~~gRNlWVS 411 (940)
T KOG4661|consen 355 RKFDFDACNEVPPAPKESSTS-----EGADQKMSSSGSSADNKTGAKS--EKGRSTLGRNLWVS 411 (940)
T ss_pred ccccccccccCCCCCcccccc-----ccccccccCccccccccccccc--cccccccccceeee
Confidence 468887777778666555322 2234555555432111 00001 12334455688976
No 21
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.82 E-value=0.0071 Score=75.45 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=9.8
Q ss_pred CcccccCCCcccCCccccC
Q 000094 237 MSPRLQSGQDVVGSRLREN 255 (2264)
Q Consensus 237 m~pq~~~~~~~~g~~~~~~ 255 (2264)
..|-+.+-+.+.|.+ +++
T Consensus 257 eedlfdSahpeegDl-Dla 274 (940)
T KOG4661|consen 257 EEDLFDSAHPEEGDL-DLA 274 (940)
T ss_pred ccccccccCCccccc-ccc
Confidence 445555566666654 443
No 22
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.27 Score=64.76 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.6
Q ss_pred CCCCCc
Q 000094 738 SGLHRS 743 (2264)
Q Consensus 738 ss~eR~ 743 (2264)
..|.|.
T Consensus 903 ~~WrR~ 908 (988)
T KOG2072|consen 903 AEWRRG 908 (988)
T ss_pred hHHhhc
Confidence 334444
No 23
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.76 E-value=0.047 Score=69.03 Aligned_cols=8 Identities=0% Similarity=-0.147 Sum_probs=2.9
Q ss_pred cccccccc
Q 000094 834 DEFTVSRG 841 (2264)
Q Consensus 834 dDYRqsrp 841 (2264)
+.++..|+
T Consensus 429 A~l~KkCP 436 (591)
T KOG2412|consen 429 ARLHKKCP 436 (591)
T ss_pred HHHHhcCC
Confidence 33333333
No 24
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=96.34 E-value=0.16 Score=60.61 Aligned_cols=6 Identities=50% Similarity=0.683 Sum_probs=3.6
Q ss_pred CCCCcc
Q 000094 538 DGRDPF 543 (2264)
Q Consensus 538 dgrDpf 543 (2264)
.|+||.
T Consensus 27 ~~FDP~ 32 (276)
T PF12037_consen 27 SGFDPE 32 (276)
T ss_pred CCCCcH
Confidence 366665
No 25
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=96.18 E-value=0.28 Score=55.32 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 000094 663 RRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIAD 698 (2264)
Q Consensus 663 RRKEEEEeKRrEeEERerreEeEeEKrRkeAEekaK 698 (2264)
+.+++.++.+.+.+....+..+++..++++.+.+.+
T Consensus 118 ka~EeAek~r~ErE~~~~q~eqERleRKKRiEEIMK 153 (171)
T PF05672_consen 118 KAREEAEKQRKERERIMQQEEQERLERKKRIEEIMK 153 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555444444444443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.052 Score=72.12 Aligned_cols=13 Identities=23% Similarity=-0.026 Sum_probs=5.8
Q ss_pred hhhhHHHHhhhhh
Q 000094 545 AGLVGVVKKKKDV 557 (2264)
Q Consensus 545 a~l~~~vKKKkEe 557 (2264)
...++++-+|...
T Consensus 753 ~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 753 KFNLALVLKKLAE 765 (1018)
T ss_pred HhHHHHHHHHHHH
Confidence 3345554444433
No 27
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.45 Score=59.42 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=4.6
Q ss_pred CCCCCcc
Q 000094 537 FDGRDPF 543 (2264)
Q Consensus 537 ~dgrDpf 543 (2264)
..|+||.
T Consensus 70 ~~gFDpe 76 (630)
T KOG0742|consen 70 WSGFDPE 76 (630)
T ss_pred ccCCChH
Confidence 4477876
No 28
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.47 Score=59.23 Aligned_cols=10 Identities=0% Similarity=0.172 Sum_probs=4.2
Q ss_pred chhhhHHHHh
Q 000094 544 SAGLVGVVKK 553 (2264)
Q Consensus 544 sa~l~~~vKK 553 (2264)
...+.+++++
T Consensus 94 aK~vfel~r~ 103 (630)
T KOG0742|consen 94 AKDVFELARM 103 (630)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 29
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=95.26 E-value=1.7 Score=52.43 Aligned_cols=15 Identities=20% Similarity=0.034 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCcccc
Q 000094 503 NDPMHNFSRDKRPLL 517 (2264)
Q Consensus 503 nD~llnFGRekR~~~ 517 (2264)
+.....+|||+-.+.
T Consensus 21 ~~~~~~~~FDP~aLE 35 (276)
T PF12037_consen 21 NPRTTASGFDPEALE 35 (276)
T ss_pred CCCcccCCCCcHHHH
Confidence 333445666765554
No 30
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.26 Score=57.74 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=5.4
Q ss_pred hhhhHHHHhhhh
Q 000094 545 AGLVGVVKKKKD 556 (2264)
Q Consensus 545 a~l~~~vKKKkE 556 (2264)
..+...+-+|++
T Consensus 97 ~~~~~kigkkK~ 108 (299)
T KOG3054|consen 97 GGLQAKIGKKKE 108 (299)
T ss_pred cchhhhhhhHHH
Confidence 334455544443
No 31
>PRK12704 phosphodiesterase; Provisional
Probab=94.23 E-value=0.6 Score=60.15 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.4
Q ss_pred CCCCCC
Q 000094 745 DMSSRN 750 (2264)
Q Consensus 745 Emg~Rs 750 (2264)
+|.-|+
T Consensus 220 ~mkgri 225 (520)
T PRK12704 220 EMKGRI 225 (520)
T ss_pred hhhcce
Confidence 344444
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.01 E-value=0.98 Score=60.10 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=4.8
Q ss_pred cccccccCC
Q 000094 188 SLQAALPAA 196 (2264)
Q Consensus 188 sl~a~~p~~ 196 (2264)
.|+-|||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 455555554
No 33
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=93.97 E-value=0.27 Score=61.71 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=13.2
Q ss_pred hhhcccchhHhhhcchhhcc
Q 000094 201 KKQKDGFSQKQKQGMSQELG 220 (2264)
Q Consensus 201 ~k~~~~~~qk~k~~~~~~~~ 220 (2264)
+|.-+.|.-||+|.|+.--+
T Consensus 115 kkkmea~fakqrqklgksaf 134 (708)
T KOG3654|consen 115 KKKMEAIFAKQRQKLGKSAF 134 (708)
T ss_pred HHHHHHHHHHHHHHhchhhe
Confidence 34445666788888776655
No 34
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.88 E-value=2.7 Score=54.43 Aligned_cols=6 Identities=0% Similarity=0.219 Sum_probs=2.4
Q ss_pred cccccc
Q 000094 861 SDFHEN 866 (2264)
Q Consensus 861 Sdf~en 866 (2264)
.++.++
T Consensus 358 AGLLHD 363 (514)
T TIGR03319 358 AGLLHD 363 (514)
T ss_pred HHHHHh
Confidence 333333
No 35
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=93.27 E-value=0.79 Score=57.94 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=2.9
Q ss_pred ccccccc
Q 000094 177 KASVLRG 183 (2264)
Q Consensus 177 ~~~vlrg 183 (2264)
.++++|.
T Consensus 39 ltiiVRl 45 (429)
T PRK00247 39 LVITVRA 45 (429)
T ss_pred HHHHHHH
Confidence 3344443
No 36
>PRK00106 hypothetical protein; Provisional
Probab=93.02 E-value=3 Score=54.32 Aligned_cols=7 Identities=14% Similarity=0.544 Sum_probs=3.0
Q ss_pred ccccccc
Q 000094 861 SDFHENI 867 (2264)
Q Consensus 861 Sdf~en~ 867 (2264)
.++.+++
T Consensus 379 AGLLHDI 385 (535)
T PRK00106 379 AGFLHDM 385 (535)
T ss_pred HHHHHhc
Confidence 4444443
No 37
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=91.87 E-value=2.5 Score=52.23 Aligned_cols=75 Identities=36% Similarity=0.510 Sum_probs=47.1
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000094 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2264)
Q Consensus 8 ~k~~svnln~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2264)
.||--|-||..|--.-. -.+- ..-..-+-||-.|.+ + ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~~-----------~~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSRE-----------PSAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCcC-----------Cccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 58988889888843310 0010 112233678877764 1 2223579999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000094 88 ERFDSSGSNGGPAGGGVSGAGQRPGSSGTGWTK 120 (2264)
Q Consensus 88 ~~~ds~g~~~~~~~~~~~g~~~~p~~sg~gwtk 120 (2264)
-+.| |..-.|+--| +||.+
T Consensus 71 ~g~d-------pn~~lVp~~G-------Tgw~~ 89 (468)
T KOG4817|consen 71 HGSD-------PNNLLVPVEG-------TGWGG 89 (468)
T ss_pred cCCC-------CCceeeecCC-------ccccc
Confidence 9999 7655444333 47764
No 38
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=90.29 E-value=1.3 Score=54.07 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=42.3
Q ss_pred CCCCCCCCCccccccCCCCCCCcCC---CCCCccccccccc---ccccccccccccccccccccccCCCcccccCCCCch
Q 000094 913 RHPRVLPPPTLTSMQKPSYRRENEC---PSPSTFQENEVEY---NRLLRSESISLAGLDRSEQHNLAQPEIIDVQPESTE 986 (2264)
Q Consensus 913 rqPrVlPpP~~~~~~~~s~~~~~~~---p~pstf~~~~~~~---~~~~r~e~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 986 (2264)
+-||-++||+.+.+-+ +..|++-. |+-|+....-+-- -.-.-.-+..-++|.++||+...|-- +|
T Consensus 399 gcP~~ie~~VpmPsPl-~S~GsslspS~~ASSSlt~~pcSSPV~~k~llGssaSSp~~qssyqvginqrf-------ha- 469 (561)
T KOG1103|consen 399 GCPRAIEPAVPMPSPL-MSIGSSLSPSLPASSSLTPRPCSSPVKKKPLLGSSASSPAVQSSYQVGINQRF-------HA- 469 (561)
T ss_pred CCCCCCCCCCCCCCcc-cccccccCCCCcccccCCCCCCCCccccccccccccCChhhhhhhhhcchhhh-------hh-
Confidence 5688888888888877 33444332 2222222111100 00000113345678888885444322 11
Q ss_pred hhhhcccccccCccCCCcccccccC
Q 000094 987 NEEQNLERSTTSRCDSQSSLSVSSA 1011 (2264)
Q Consensus 987 ~E~~~~~~~~t~~~dsqsslsvssp 1011 (2264)
--|++- ++.-.|-|+|.-.|+|
T Consensus 470 -aRhkf~--aqad~dqqasgl~sp~ 491 (561)
T KOG1103|consen 470 -ARHKFA--AQADMDQQASGLNSPA 491 (561)
T ss_pred -ccchhh--hcccCcccccccCCCc
Confidence 123333 4566677777666554
No 39
>PRK12705 hypothetical protein; Provisional
Probab=89.12 E-value=20 Score=46.81 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=2.9
Q ss_pred HHHHhhh
Q 000094 549 GVVKKKK 555 (2264)
Q Consensus 549 ~~vKKKk 555 (2264)
..++++.
T Consensus 23 ~~~~~~~ 29 (508)
T PRK12705 23 VLLKKRQ 29 (508)
T ss_pred HHHHHHH
Confidence 3344444
No 40
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=87.79 E-value=12 Score=50.84 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=7.0
Q ss_pred cCCCCCCeeeccCC
Q 000094 277 YFPGPLPLVRLKPR 290 (2264)
Q Consensus 277 ~~~gplplvrl~~~ 290 (2264)
+|.-|..+|-||-+
T Consensus 217 ~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 217 FYIEPQAIVKLNNK 230 (771)
T ss_pred EEEEcHHHHHHHHH
Confidence 44445555555543
No 41
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=87.64 E-value=7.7 Score=52.70 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=5.3
Q ss_pred cCCCCCCeeecc
Q 000094 277 YFPGPLPLVRLK 288 (2264)
Q Consensus 277 ~~~gplplvrl~ 288 (2264)
+|.-|..+|-|+
T Consensus 222 ~y~ep~~~~~ln 233 (782)
T PRK00409 222 LYIEPQSVVELN 233 (782)
T ss_pred EEEEcHHHHHHH
Confidence 334444444443
No 42
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=87.13 E-value=23 Score=48.43 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=20.5
Q ss_pred ccccCCCCCCCCCCCCCCC--CCccccccCcCCccccccccccccccCCC
Q 000094 318 AYWEGDFDMPRPSVLPHKP--AHNVFERWGQRDSETGKVSSSEVARVDPF 365 (2264)
Q Consensus 318 ~~w~~~fd~~~~~~~p~k~--~~~~~~~~g~r~~e~~k~~~~e~~~~~~~ 365 (2264)
+-|+++-=.++--|||--. --.+| +|-||+.---+.-||-.
T Consensus 752 pvy~eepfvF~KVvLpeLA~lRiavy-------eEggK~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 752 PVYEEEPFVFRKVVLPELASLRIAVY-------EEGGKFIGQRILPVDGL 794 (1189)
T ss_pred cccccCCcccceecccchhheeeeee-------ccCCceeeeeccchhcc
Confidence 4566553334455777321 11223 46667666556555543
No 43
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=86.47 E-value=2.4 Score=54.66 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=8.4
Q ss_pred cccCCCCCCCCCCCC
Q 000094 875 GWGQGRYRGNVHPPY 889 (2264)
Q Consensus 875 ~W~~s~s~grp~PPy 889 (2264)
-|+.....++..|.+
T Consensus 459 ~w~~~~~e~~~~~~~ 473 (492)
T PF02029_consen 459 QWLTKTPEGSKSPAP 473 (492)
T ss_pred HhhcCCCCCCCCCCC
Confidence 477766666554433
No 44
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.09 E-value=7 Score=47.29 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCcC
Q 000094 798 DSAFGGRAVPRKEF 811 (2264)
Q Consensus 798 D~~f~hrsprrk~f 811 (2264)
|++-=|++|+|..|
T Consensus 249 ~P~~f~t~fPR~tf 262 (290)
T KOG2689|consen 249 DPYSFHTGFPRVTF 262 (290)
T ss_pred CCeeeecCCCceec
Confidence 44556777777665
No 45
>PLN02316 synthase/transferase
Probab=83.96 E-value=12 Score=52.26 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.5
Q ss_pred hhhhhhccc
Q 000094 267 RSEQVRKQE 275 (2264)
Q Consensus 267 ~~e~~rk~~ 275 (2264)
+.|+.||+.
T Consensus 120 ~~~~~~~~~ 128 (1036)
T PLN02316 120 ERENLRKRE 128 (1036)
T ss_pred hHHHHHHHH
Confidence 344555554
No 46
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.31 E-value=41 Score=44.97 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=6.8
Q ss_pred cCCccccccccc
Q 000094 346 QRDSETGKVSSS 357 (2264)
Q Consensus 346 ~r~~e~~k~~~~ 357 (2264)
+|.|+.|+|-..
T Consensus 574 ~~~~~~~~~k~q 585 (1187)
T KOG0579|consen 574 ERANAVSNIKTQ 585 (1187)
T ss_pred hhhhhhhhhhhh
Confidence 466666665543
No 47
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=83.23 E-value=61 Score=42.55 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=10.1
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccc
Q 000094 318 AYWEGDFDMPRPSVLPHKPAHNVFE 342 (2264)
Q Consensus 318 ~~w~~~fd~~~~~~~p~k~~~~~~~ 342 (2264)
+||+..|+-.-...+| |+..+|+
T Consensus 26 A~~n~~f~d~f~~~vP--~~e~lv~ 48 (582)
T PF09731_consen 26 AKQNDNFRDFFEEYVP--YGEELVD 48 (582)
T ss_pred hhcChHHHHHHHHhCC--cHHHHHH
Confidence 4455555443333355 3444443
No 48
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=82.60 E-value=76 Score=37.26 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=8.5
Q ss_pred ccchhccccccCC
Q 000094 469 QYGSEQYNRFRGD 481 (2264)
Q Consensus 469 ay~idQynrYrgg 481 (2264)
+|--.+|+||-.-
T Consensus 71 ~y~r~~FgrYGa~ 83 (225)
T KOG4848|consen 71 AYRRERFGRYGAK 83 (225)
T ss_pred HHHHHHHHhhccc
Confidence 5666677777653
No 49
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=81.42 E-value=6.5 Score=51.04 Aligned_cols=18 Identities=17% Similarity=0.040 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 000094 493 FSSGGRGFPHNDPMHNFS 510 (2264)
Q Consensus 493 ~~~GgkGll~nD~llnFG 510 (2264)
|++-|++.+....-+|||
T Consensus 184 pvldG~~il~~~kRiN~G 201 (645)
T KOG0681|consen 184 PVLDGRLILKDVKRINWG 201 (645)
T ss_pred EEecCchhhhcceeeccC
Confidence 334466656555555554
No 50
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=81.23 E-value=32 Score=43.44 Aligned_cols=12 Identities=8% Similarity=-0.055 Sum_probs=6.0
Q ss_pred cccCCCCCcccC
Q 000094 751 QFARDNSSGFLD 762 (2264)
Q Consensus 751 ~TSrdsDSSsld 762 (2264)
+.|...|..+++
T Consensus 408 pnp~pidp~~le 419 (442)
T PF06637_consen 408 PNPPPIDPASLE 419 (442)
T ss_pred CCCCCCChHHHH
Confidence 344555555543
No 51
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=81.15 E-value=3.7 Score=51.79 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.0
Q ss_pred cccCccc
Q 000094 827 GILEPHM 833 (2264)
Q Consensus 827 gi~Di~l 833 (2264)
-+.|+.|
T Consensus 374 tllEl~L 380 (506)
T KOG2507|consen 374 TLLELRL 380 (506)
T ss_pred hHHHhcc
Confidence 3444433
No 52
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.98 E-value=50 Score=44.25 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=6.8
Q ss_pred ccCCCccccccc
Q 000094 182 RGEDFPSLQAAL 193 (2264)
Q Consensus 182 rgedfpsl~a~~ 193 (2264)
-|+-|-++|++.
T Consensus 472 ~G~~~~s~qs~~ 483 (1187)
T KOG0579|consen 472 QGSTFFSPQSSA 483 (1187)
T ss_pred cCccccCccccC
Confidence 355555666655
No 53
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.67 E-value=47 Score=49.36 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=5.1
Q ss_pred CCccccccc
Q 000094 185 DFPSLQAAL 193 (2264)
Q Consensus 185 dfpsl~a~~ 193 (2264)
||.-|....
T Consensus 302 ~Y~f~~~~~ 310 (1930)
T KOG0161|consen 302 DYKFLSNGE 310 (1930)
T ss_pred hhhhhcccc
Confidence 566555555
No 54
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=80.49 E-value=11 Score=48.55 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=9.9
Q ss_pred CCCCCCCcccccccccC
Q 000094 75 PPPLNLPSLRKEHERFD 91 (2264)
Q Consensus 75 p~plnlpslrkeh~~~d 91 (2264)
+.||.--+-.++||--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 44555445556777666
No 55
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=80.17 E-value=1.2e+02 Score=38.93 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.9
Q ss_pred HHhhhhhhc
Q 000094 551 VKKKKDVLK 559 (2264)
Q Consensus 551 vKKKkEeaK 559 (2264)
++.++++..
T Consensus 83 lr~~rtel~ 91 (499)
T COG4372 83 LRALRTELG 91 (499)
T ss_pred HHHHHHHHH
Confidence 444444443
No 56
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.12 E-value=47 Score=41.42 Aligned_cols=17 Identities=35% Similarity=0.143 Sum_probs=9.0
Q ss_pred CccCCCcccccccCCCC
Q 000094 998 SRCDSQSSLSVSSAPDS 1014 (2264)
Q Consensus 998 ~~~dsqsslsvsspp~s 1014 (2264)
++..+=||||.|+|-+|
T Consensus 413 Pl~S~GsslspS~~ASS 429 (561)
T KOG1103|consen 413 PLMSIGSSLSPSLPASS 429 (561)
T ss_pred cccccccccCCCCcccc
Confidence 34444566666665443
No 57
>PTZ00491 major vault protein; Provisional
Probab=79.09 E-value=50 Score=45.44 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.6
Q ss_pred CCcccccCCCC
Q 000094 150 DGVGVYVPPSV 160 (2264)
Q Consensus 150 ~~~~~~~~~s~ 160 (2264)
++.|.|+|..-
T Consensus 198 t~~gaylP~v~ 208 (850)
T PTZ00491 198 RTPGAYLPGVF 208 (850)
T ss_pred eccccccCCCc
Confidence 44667776553
No 58
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=78.85 E-value=2.3e+02 Score=39.67 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.2
Q ss_pred ccccCC
Q 000094 528 FMKDFG 533 (2264)
Q Consensus 528 ~l~DF~ 533 (2264)
|..+|.
T Consensus 314 ~~~~~~ 319 (980)
T KOG0980|consen 314 FEAEPA 319 (980)
T ss_pred cccCcc
Confidence 333333
No 59
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.59 E-value=46 Score=46.69 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=36.3
Q ss_pred cCCCCCCccCCCccccccccccCCCccccccccCCCCchh--hhcccch---hHhhhcchhhccccccCCCCCCCc
Q 000094 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFNA 232 (2264)
Q Consensus 162 ~~~~~~~~~~~~~~e~~~vlrgedfpsl~a~~p~~~~~~~--k~~~~~~---qk~k~~~~~~~~~~e~~~~~~~~~ 232 (2264)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.++
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~ 1261 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS 1261 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 566666555555554332 224566656666655 3322222 377788888888777665554443
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.17 E-value=74 Score=44.94 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=4.2
Q ss_pred CCccccccc
Q 000094 185 DFPSLQAAL 193 (2264)
Q Consensus 185 dfpsl~a~~ 193 (2264)
+.|-+-+.|
T Consensus 1247 ~L~~~E~~L 1255 (1758)
T KOG0994|consen 1247 DLPQEEETL 1255 (1758)
T ss_pred hhhhhhhhh
Confidence 444444444
No 61
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=77.25 E-value=92 Score=43.17 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=7.1
Q ss_pred ccccCcCCcccccccccc
Q 000094 341 FERWGQRDSETGKVSSSE 358 (2264)
Q Consensus 341 ~~~~g~r~~e~~k~~~~e 358 (2264)
|-++--++|-.--|+..|
T Consensus 740 ~rtrt~~~n~~npvy~ee 757 (1189)
T KOG1265|consen 740 FRTRTVQGNSFNPVYEEE 757 (1189)
T ss_pred hhhccccCCCCCcccccC
Confidence 333333444443333333
No 62
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=77.02 E-value=92 Score=39.73 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.5
Q ss_pred cccccC
Q 000094 475 YNRFRG 480 (2264)
Q Consensus 475 ynrYrg 480 (2264)
|.|||.
T Consensus 129 ~~Ry~a 134 (442)
T PF06637_consen 129 NQRYMA 134 (442)
T ss_pred HHHHHH
Confidence 344443
No 63
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=76.38 E-value=1e+02 Score=39.83 Aligned_cols=7 Identities=43% Similarity=1.099 Sum_probs=3.0
Q ss_pred cCccccC
Q 000094 841 GQRWNMS 847 (2264)
Q Consensus 841 pqrWgip 847 (2264)
..+|-.+
T Consensus 258 ~~rws~~ 264 (445)
T PRK13428 258 SQRWSAN 264 (445)
T ss_pred hCccCcc
Confidence 3445433
No 64
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=75.53 E-value=15 Score=47.52 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 000094 501 PHNDPMHNF 509 (2264)
Q Consensus 501 l~nD~llnF 509 (2264)
|||.....|
T Consensus 205 L~~e~v~~~ 213 (460)
T KOG1363|consen 205 LCNEAVVDY 213 (460)
T ss_pred hhhHHHHHH
Confidence 344444443
No 65
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=74.23 E-value=29 Score=42.73 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=5.7
Q ss_pred CCCccccccCcC
Q 000094 336 PAHNVFERWGQR 347 (2264)
Q Consensus 336 ~~~~~~~~~g~r 347 (2264)
|++-.||+|=-|
T Consensus 3 ~~NiM~D~RV~R 14 (291)
T PF06098_consen 3 YGNIMYDRRVVR 14 (291)
T ss_pred cccccCCCCcCC
Confidence 444555554333
No 66
>PTZ00491 major vault protein; Provisional
Probab=73.31 E-value=56 Score=45.04 Aligned_cols=6 Identities=33% Similarity=0.667 Sum_probs=4.6
Q ss_pred cccccC
Q 000094 475 YNRFRG 480 (2264)
Q Consensus 475 ynrYrg 480 (2264)
||||=.
T Consensus 548 YnW~F~ 553 (850)
T PTZ00491 548 YNWYFD 553 (850)
T ss_pred EEEEEe
Confidence 888865
No 67
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=72.35 E-value=6.6 Score=49.68 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.3
Q ss_pred cccccc
Q 000094 861 SDFHEN 866 (2264)
Q Consensus 861 Sdf~en 866 (2264)
+.|-.+
T Consensus 425 s~f~~~ 430 (506)
T KOG2507|consen 425 SSFANP 430 (506)
T ss_pred HHHhcc
Confidence 334333
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=71.53 E-value=1.1e+02 Score=39.42 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=9.0
Q ss_pred ccCccCCCcccccccC
Q 000094 996 TTSRCDSQSSLSVSSA 1011 (2264)
Q Consensus 996 ~t~~~dsqsslsvssp 1011 (2264)
.+-+|.|=.+-.|=||
T Consensus 382 ~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSP 397 (459)
T ss_pred cccccccccceeEECC
Confidence 3455665555555555
No 69
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.44 E-value=1.5e+02 Score=38.43 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.2
Q ss_pred cchhcc
Q 000094 470 YGSEQY 475 (2264)
Q Consensus 470 y~idQy 475 (2264)
|+++.+
T Consensus 153 ln~e~~ 158 (502)
T KOG0982|consen 153 LNTESW 158 (502)
T ss_pred hccchH
Confidence 333333
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.38 E-value=1.6e+02 Score=43.51 Aligned_cols=11 Identities=9% Similarity=0.289 Sum_probs=6.5
Q ss_pred CCCCCCCCcee
Q 000094 1288 SLIPSPFPAIQ 1298 (2264)
Q Consensus 1288 sLipspvPAIQ 1298 (2264)
.+.+.|=|+|+
T Consensus 830 ~f~~~pe~~~~ 840 (1486)
T PRK04863 830 AFEADPEAELR 840 (1486)
T ss_pred hcCCCcHHHHH
Confidence 35566666664
No 71
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.36 E-value=1.6e+02 Score=44.27 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=7.0
Q ss_pred CCCcccccCCC
Q 000094 524 QDDPFMKDFGS 534 (2264)
Q Consensus 524 ~ED~~l~DF~~ 534 (2264)
..|++..-|.+
T Consensus 816 r~w~W~~Lf~k 826 (1930)
T KOG0161|consen 816 RTWPWWRLFTK 826 (1930)
T ss_pred ccCHHHHHHHH
Confidence 46666666665
No 72
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=66.90 E-value=1.8e+02 Score=37.03 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=2.9
Q ss_pred cchhccc
Q 000094 470 YGSEQYN 476 (2264)
Q Consensus 470 y~idQyn 476 (2264)
.+|.+|+
T Consensus 140 mGi~I~s 146 (428)
T KOG2668|consen 140 MGIVIYS 146 (428)
T ss_pred cceEEEE
Confidence 3444444
No 73
>PRK12472 hypothetical protein; Provisional
Probab=66.48 E-value=68 Score=41.94 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=5.7
Q ss_pred ccchhccccc
Q 000094 469 QYGSEQYNRF 478 (2264)
Q Consensus 469 ay~idQynrY 478 (2264)
.++||.++|+
T Consensus 122 GiaIHGt~~p 131 (508)
T PRK12472 122 GIALHGGPLP 131 (508)
T ss_pred eEEEecCCCC
Confidence 3566666654
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.53 E-value=89 Score=45.88 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=19.7
Q ss_pred cccccc-CccccCCCCCCCCCcccccccc-ccccccccCCccc
Q 000094 836 FTVSRG-QRWNMSGDGDHYGRNIEMESDF-HENITERYGDVGW 876 (2264)
Q Consensus 836 YRqsrp-qrWgipgDGD~fGrn~E~DSdf-~en~~Er~gd~~W 876 (2264)
|...|| +..-|.+|-+-|.- ..|+.+. +....-+|+|+.|
T Consensus 727 ~L~~~p~d~~li~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 768 (1486)
T PRK04863 727 GLEDCPEDLYLIEGDPDSFDD-SVFSVEELEKAVVVKIADRQW 768 (1486)
T ss_pred hccCCccceeeecCChhHHhc-cCccHHHhcCCeeeeecchhh
Confidence 445576 55666444333322 2344333 3355555666666
No 75
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=65.42 E-value=2.2e+02 Score=39.42 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=14.8
Q ss_pred ccccCcCCccCC--ccchhcchhhhhhc
Q 000094 1062 MIAPASSISAGD--DEEWAVENDERLHE 1087 (2264)
Q Consensus 1062 ~~~~~s~~s~~d--d~ew~~~~~e~~~e 1087 (2264)
+|++-.-|+-+| .+-|.+++-=+--+
T Consensus 813 rmnGwlRVyRdd~~~stwl~~wammdl~ 840 (1265)
T KOG0976|consen 813 RMNGWLRVYRDDAEASTWLLGWAMMDLE 840 (1265)
T ss_pred hcccceeeeccccchhHHHHHHHHhhhc
Confidence 355544566555 45787777655333
No 76
>PRK12472 hypothetical protein; Provisional
Probab=65.19 E-value=1.1e+02 Score=40.07 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.7
Q ss_pred CcccccCCCCC
Q 000094 526 DPFMKDFGSSS 536 (2264)
Q Consensus 526 D~~l~DF~~~s 536 (2264)
|.--.+|..+.
T Consensus 166 d~~p~~~~~~~ 176 (508)
T PRK12472 166 DAAPVDISHPA 176 (508)
T ss_pred CCCccccCCcc
Confidence 33344455443
No 77
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=65.04 E-value=2e+02 Score=39.37 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=7.8
Q ss_pred ccccCCCCCCCCCccccc
Q 000094 843 RWNMSGDGDHYGRNIEME 860 (2264)
Q Consensus 843 rWgipgDGD~fGrn~E~D 860 (2264)
.|........|+.+++-+
T Consensus 792 sfeg~apr~~~~~~sdee 809 (828)
T PF04094_consen 792 SFEGSAPRLAFALNSDEE 809 (828)
T ss_pred cccCcCccccccCCCccc
Confidence 344333344555554433
No 78
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.99 E-value=2.8e+02 Score=39.47 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=13.8
Q ss_pred ccCCCCC--CCCCCccchhhhHHHHhhhhh
Q 000094 530 KDFGSSS--FDGRDPFSAGLVGVVKKKKDV 557 (2264)
Q Consensus 530 ~DF~~~s--~dgrDpfsa~l~~~vKKKkEe 557 (2264)
|.|...| -+|-.++.+.++-.+.+-.+.
T Consensus 653 DV~dP~GtlTGGs~~~~a~~L~~l~~l~~~ 682 (1174)
T KOG0933|consen 653 DVYDPSGTLTGGSRSKGADLLRQLQKLKQA 682 (1174)
T ss_pred ceeCCCCcccCCCCCCcccHHHHHHHHHHH
Confidence 4455555 445555555544444444333
No 79
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.68 E-value=1.1e+02 Score=41.87 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.5
Q ss_pred CcccccccccC
Q 000094 81 PSLRKEHERFD 91 (2264)
Q Consensus 81 pslrkeh~~~d 91 (2264)
|-+.-.|-.+-
T Consensus 83 ~~f~v~~i~~n 93 (717)
T PF10168_consen 83 PLFEVHQISLN 93 (717)
T ss_pred CceeEEEEEEC
Confidence 33444444433
No 80
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.42 E-value=1.6e+02 Score=43.04 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.4
Q ss_pred ccccccc
Q 000094 349 SETGKVS 355 (2264)
Q Consensus 349 ~e~~k~~ 355 (2264)
|-.||..
T Consensus 33 NGsGKS~ 39 (1353)
T TIGR02680 33 NGAGKSK 39 (1353)
T ss_pred CCCcHHH
Confidence 4455543
No 81
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=62.91 E-value=1.9e+02 Score=42.44 Aligned_cols=11 Identities=9% Similarity=-0.049 Sum_probs=4.0
Q ss_pred ccccccccCcc
Q 000094 834 DEFTVSRGQRW 844 (2264)
Q Consensus 834 dDYRqsrpqrW 844 (2264)
.||.....+.|
T Consensus 608 ~df~e~v~~~~ 618 (1353)
T TIGR02680 608 VDFADDVPADV 618 (1353)
T ss_pred eecCCCCCHHH
Confidence 33333333333
No 82
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=62.21 E-value=46 Score=43.84 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=2.6
Q ss_pred CCCeee
Q 000094 281 PLPLVR 286 (2264)
Q Consensus 281 plplvr 286 (2264)
+.|||-
T Consensus 23 ~~piVI 28 (645)
T KOG0681|consen 23 TIPIVI 28 (645)
T ss_pred CCcEEE
Confidence 444443
No 83
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.30 E-value=2.5e+02 Score=38.01 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=5.1
Q ss_pred ccccccccC
Q 000094 187 PSLQAALPA 195 (2264)
Q Consensus 187 psl~a~~p~ 195 (2264)
|++.+.||.
T Consensus 47 p~~~~~l~~ 55 (594)
T PF05667_consen 47 PSLGSSLPR 55 (594)
T ss_pred ccccCCCcc
Confidence 556555555
No 84
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.15 E-value=1.3e+02 Score=37.33 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 000094 327 PRPSVLP 333 (2264)
Q Consensus 327 ~~~~~~p 333 (2264)
|-++.+|
T Consensus 71 p~~H~~~ 77 (406)
T KOG3859|consen 71 PSTHTLP 77 (406)
T ss_pred CCccCCC
Confidence 3444444
No 85
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=60.64 E-value=1.8e+02 Score=37.40 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=11.6
Q ss_pred ccccccCCCCchhhhcc
Q 000094 189 LQAALPAASGSEKKQKD 205 (2264)
Q Consensus 189 l~a~~p~~~~~~~k~~~ 205 (2264)
|||..|+--+++.|-|+
T Consensus 82 lqagtpplqVnEEk~~a 98 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEKEKA 98 (672)
T ss_pred HhcCCCCCCCchhhccc
Confidence 67777777777666554
No 86
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=60.37 E-value=3.3e+02 Score=38.25 Aligned_cols=7 Identities=29% Similarity=0.558 Sum_probs=3.4
Q ss_pred CCccccc
Q 000094 780 SSTFITQ 786 (2264)
Q Consensus 780 ss~F~P~ 786 (2264)
.-.|+|-
T Consensus 574 r~tflpl 580 (1164)
T TIGR02169 574 RATFLPL 580 (1164)
T ss_pred CeeeccH
Confidence 3445553
No 87
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=60.33 E-value=3.6e+02 Score=37.06 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=12.0
Q ss_pred hcchhhhhhcccccccccCCC
Q 000094 1078 AVENDERLHEQEEYDEDEDGY 1098 (2264)
Q Consensus 1078 ~~~~~e~~~eq~eyded~~~y 1098 (2264)
+.++.+...++++|-.=+-+|
T Consensus 893 T~e~e~l~ek~~~~p~~~~~l 913 (961)
T KOG4673|consen 893 TAECEKLREKADRVPGIKAEL 913 (961)
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 456666666676664444333
No 88
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.50 E-value=2.2e+02 Score=40.81 Aligned_cols=8 Identities=50% Similarity=0.970 Sum_probs=4.1
Q ss_pred CcCCCCCC
Q 000094 809 KEFYGGPG 816 (2264)
Q Consensus 809 k~f~GG~G 816 (2264)
..|||+.|
T Consensus 616 ~Gf~GRLG 623 (1293)
T KOG0996|consen 616 PGFYGRLG 623 (1293)
T ss_pred Cccccccc
Confidence 34555554
No 89
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.26 E-value=2.4e+02 Score=36.66 Aligned_cols=7 Identities=43% Similarity=0.976 Sum_probs=2.9
Q ss_pred cCCCCCC
Q 000094 398 IGDNRNG 404 (2264)
Q Consensus 398 ~gner~G 404 (2264)
+-++.+|
T Consensus 77 mDDD~nG 83 (575)
T KOG4403|consen 77 MDDDHNG 83 (575)
T ss_pred cccccCC
Confidence 3444444
No 90
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=56.98 E-value=62 Score=37.87 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=0.0
Q ss_pred chhccccccC
Q 000094 471 GSEQYNRFRG 480 (2264)
Q Consensus 471 ~idQynrYrg 480 (2264)
++..|+||.-
T Consensus 32 ~L~~yGWyil 41 (190)
T PF06936_consen 32 FLSSYGWYIL 41 (190)
T ss_dssp ----------
T ss_pred HHHHhCHHHH
Confidence 4444454444
No 91
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=56.49 E-value=1.5e+02 Score=40.40 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=8.7
Q ss_pred cCCCCCCCCCcc
Q 000094 912 MRHPRVLPPPTL 923 (2264)
Q Consensus 912 ~rqPrVlPpP~~ 923 (2264)
||++-|.++|.-
T Consensus 440 ~~~~~~~~~p~~ 451 (916)
T KOG0249|consen 440 MDRMGVMTLPSD 451 (916)
T ss_pred ccCCccccCccc
Confidence 578888887743
No 92
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=55.80 E-value=2.5e+02 Score=38.79 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.2
Q ss_pred CCccccCCCCCCCccc
Q 000094 69 VPKLSVPPPLNLPSLR 84 (2264)
Q Consensus 69 ~~klsvp~plnlpslr 84 (2264)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55666666777 5554
No 93
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=55.72 E-value=3.5e+02 Score=37.39 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=3.6
Q ss_pred hhHHHHhhh
Q 000094 547 LVGVVKKKK 555 (2264)
Q Consensus 547 l~~~vKKKk 555 (2264)
|-+.+++-+
T Consensus 440 l~~v~re~e 448 (828)
T PF04094_consen 440 LDSVMRETE 448 (828)
T ss_pred HHHHHHHHH
Confidence 334444333
No 94
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=55.06 E-value=17 Score=45.81 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.9
Q ss_pred CCCCCCCc
Q 000094 258 INHDTGSA 265 (2264)
Q Consensus 258 ~~~~~g~~ 265 (2264)
+-+|.|+.
T Consensus 54 EDFGDGGA 61 (506)
T KOG2441|consen 54 EDFGDGGA 61 (506)
T ss_pred hhccCCCc
Confidence 34555554
No 95
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=54.30 E-value=5.6e+02 Score=32.54 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.7
Q ss_pred CCCCCcccccccc
Q 000094 376 GREGNMWRASSSL 388 (2264)
Q Consensus 376 g~e~nsWr~~spl 388 (2264)
|+.-++|+....+
T Consensus 53 gr~r~~~~lr~~~ 65 (340)
T KOG3756|consen 53 GRGRGSLLLRRGF 65 (340)
T ss_pred cchhhhhhhhhhh
Confidence 4444566655444
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=53.62 E-value=4.9e+02 Score=34.08 Aligned_cols=8 Identities=38% Similarity=0.119 Sum_probs=3.5
Q ss_pred cccccccC
Q 000094 1004 SSLSVSSA 1011 (2264)
Q Consensus 1004 sslsvssp 1011 (2264)
.+|.++|+
T Consensus 354 ~~lLsssR 361 (459)
T KOG0288|consen 354 LELLSSSR 361 (459)
T ss_pred eEEeeecC
Confidence 34444444
No 97
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=51.17 E-value=6.1e+02 Score=35.55 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.3
Q ss_pred CCCCccccceeee
Q 000094 1534 PRRPRRQRTEFRV 1546 (2264)
Q Consensus 1534 ~r~~~~~rtefrv 1546 (2264)
.++.+--|||||-
T Consensus 1197 ~~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1197 PHTVLAERTELRC 1209 (1265)
T ss_pred chhhhhhhhheee
Confidence 3457778899874
No 98
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=50.13 E-value=2.5e+02 Score=40.54 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=4.4
Q ss_pred CCCCCCceeec
Q 000094 1290 IPSPFPAIQIG 1300 (2264)
Q Consensus 1290 ipspvPAIQIG 1300 (2264)
-|+-++..+++
T Consensus 1191 ~~~~f~~l~l~ 1201 (1317)
T KOG0612|consen 1191 HPSEFSYLSLG 1201 (1317)
T ss_pred Cccccchhhcc
Confidence 33334444433
No 99
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.90 E-value=2.2e+02 Score=39.03 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=4.4
Q ss_pred CCCcccCCCCc
Q 000094 1494 AQGLTSGSRGK 1504 (2264)
Q Consensus 1494 ~~g~~s~~rg~ 1504 (2264)
+-+++.-|+-|
T Consensus 824 F~nLi~~gtdr 834 (916)
T KOG0249|consen 824 FNNLLALGTDR 834 (916)
T ss_pred HHhhhcccccc
Confidence 33444444333
No 100
>PRK03918 chromosome segregation protein; Provisional
Probab=48.72 E-value=7.5e+02 Score=34.20 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=5.1
Q ss_pred Cccccccc
Q 000094 348 DSETGKVS 355 (2264)
Q Consensus 348 ~~e~~k~~ 355 (2264)
.|-+||.+
T Consensus 31 ~nG~GKSt 38 (880)
T PRK03918 31 QNGSGKSS 38 (880)
T ss_pred CCCCCHHH
Confidence 36678855
No 101
>PLN02316 synthase/transferase
Probab=47.74 E-value=73 Score=45.16 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=6.2
Q ss_pred ccceeecCcc
Q 000094 1810 ASGFIFDSEN 1819 (2264)
Q Consensus 1810 ~~g~~~d~~~ 1819 (2264)
..||+|+..+
T Consensus 975 ~tGflf~~~d 984 (1036)
T PLN02316 975 PNGFSFDGAD 984 (1036)
T ss_pred CceEEeCCCC
Confidence 4577777543
No 102
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.69 E-value=4.9e+02 Score=35.73 Aligned_cols=13 Identities=23% Similarity=0.067 Sum_probs=5.7
Q ss_pred CCCcchhhhhhcc
Q 000094 262 TGSARRSEQVRKQ 274 (2264)
Q Consensus 262 ~g~~~~~e~~rk~ 274 (2264)
+|-.|.-=-.||+
T Consensus 211 LGITCIELAERkP 223 (948)
T KOG0577|consen 211 LGITCIELAERKP 223 (948)
T ss_pred ccchhhhhhhcCC
Confidence 4444543334554
No 103
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=46.20 E-value=90 Score=39.90 Aligned_cols=7 Identities=43% Similarity=0.833 Sum_probs=3.2
Q ss_pred hcccccc
Q 000094 473 EQYNRFR 479 (2264)
Q Consensus 473 dQynrYr 479 (2264)
.||-+|.
T Consensus 172 s~YIryt 178 (506)
T KOG2441|consen 172 SQYIRYT 178 (506)
T ss_pred cceeeec
Confidence 3444444
No 104
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=45.99 E-value=1.4e+02 Score=38.98 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000094 36 HSGYYGSNRARPTGGGGGGM 55 (2264)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ggm 55 (2264)
++|+.+...+.+|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33333334444444455555
No 105
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=45.40 E-value=1.7e+02 Score=38.20 Aligned_cols=8 Identities=50% Similarity=0.580 Sum_probs=3.6
Q ss_pred cccccccC
Q 000094 177 KASVLRGE 184 (2264)
Q Consensus 177 ~~~vlrge 184 (2264)
|-|-|||-
T Consensus 178 KmVd~rG~ 185 (641)
T KOG3915|consen 178 KMVDLRGA 185 (641)
T ss_pred eeeeecCc
Confidence 44444444
No 106
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=44.55 E-value=54 Score=36.33 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=33.6
Q ss_pred CCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCCcCC-CCCCccCCCccccccccc-cCCCccccccc
Q 000094 117 GWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGT-VGPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (2264)
Q Consensus 117 gwtkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~e~~~vlr-gedfpsl~a~~ 193 (2264)
=|.|++++.......- +... --...++|||.||.+|-.. .-....+ |==|- =+-||||+||.
T Consensus 60 PWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 60 PWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 6999887544444432 1111 1135678999999999332 1111111 11111 24799999874
No 107
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.57 E-value=6.7e+02 Score=36.57 Aligned_cols=7 Identities=0% Similarity=0.231 Sum_probs=2.8
Q ss_pred cCCCccc
Q 000094 715 DVGDWED 721 (2264)
Q Consensus 715 d~dDwEd 721 (2264)
+..+|..
T Consensus 550 ~l~~~k~ 556 (1293)
T KOG0996|consen 550 ELPSLKQ 556 (1293)
T ss_pred hhhhHHH
Confidence 3334443
No 108
>COG4499 Predicted membrane protein [Function unknown]
Probab=41.71 E-value=55 Score=41.72 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=5.1
Q ss_pred hhHHHHhhhhh
Q 000094 547 LVGVVKKKKDV 557 (2264)
Q Consensus 547 l~~~vKKKkEe 557 (2264)
+++.++++++.
T Consensus 346 ~~Al~k~~eev 356 (434)
T COG4499 346 LLALTKLYEEV 356 (434)
T ss_pred HHHHHHHHHHH
Confidence 34545444443
No 109
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.15 E-value=8.3e+02 Score=32.45 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.6
Q ss_pred CCCCCccccc
Q 000094 376 GREGNMWRAS 385 (2264)
Q Consensus 376 g~e~nsWr~~ 385 (2264)
|...|+|..+
T Consensus 235 ~~~~~Lwicl 244 (493)
T KOG0804|consen 235 GCTEDLWICL 244 (493)
T ss_pred cccccEEEEE
Confidence 4555666554
No 110
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=40.35 E-value=2.7e+02 Score=34.53 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=7.8
Q ss_pred hhhhcccccCCCCCC
Q 000094 269 EQVRKQEEYFPGPLP 283 (2264)
Q Consensus 269 e~~rk~~~~~~gplp 283 (2264)
|.+|-..+||-|-+-
T Consensus 14 ~~~~~~~~~f~~~~~ 28 (379)
T COG5269 14 ELARIHSEYFKGRNV 28 (379)
T ss_pred cccChHHHHhcchhH
Confidence 334555566666443
No 111
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=40.32 E-value=9.9e+02 Score=35.17 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=5.6
Q ss_pred EEeeccCccccccCC
Q 000094 56 LVLSRPRSSQKAAVP 70 (2264)
Q Consensus 56 ~vlsr~r~~~~~~~~ 70 (2264)
|-|-|-+++.++-++
T Consensus 91 V~lVr~k~t~~VYAM 105 (1317)
T KOG0612|consen 91 VALVRHKSTEKVYAM 105 (1317)
T ss_pred eEEEEeeccccchhH
Confidence 333333333333333
No 112
>PLN03188 kinesin-12 family protein; Provisional
Probab=40.30 E-value=7e+02 Score=36.76 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=9.0
Q ss_pred CCCcccccccccccccCCC
Q 000094 408 RPSSLNREANKETKFMSSP 426 (2264)
Q Consensus 408 rp~SR~Rg~SKkSkY~sSP 426 (2264)
.|++..=.|...++.-.+|
T Consensus 672 ~~~~lsi~p~~~~~~l~~p 690 (1320)
T PLN03188 672 SPSSLSIVPVEVSPVLKSP 690 (1320)
T ss_pred CccccccccccccccccCC
Confidence 4444444455555444444
No 113
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=39.59 E-value=8.5e+02 Score=35.32 Aligned_cols=15 Identities=53% Similarity=0.860 Sum_probs=7.5
Q ss_pred CCCC-eeeccCCCCCcc
Q 000094 280 GPLP-LVRLKPRSDWAD 295 (2264)
Q Consensus 280 gplp-lvrl~~~sdwad 295 (2264)
|||- +|.|.-- -||+
T Consensus 497 GPlG~~Vtl~~~-KWa~ 512 (1074)
T KOG0250|consen 497 GPLGKYVTLKEP-KWAL 512 (1074)
T ss_pred CCccceeEecCc-HHHH
Confidence 5553 4555433 6665
No 114
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=39.23 E-value=76 Score=45.67 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=8.9
Q ss_pred CCCCCccccccccc
Q 000094 376 GREGNMWRASSSLQ 389 (2264)
Q Consensus 376 g~e~nsWr~~spl~ 389 (2264)
+-++.+|-++..-+
T Consensus 1924 ~~~p~s~~a~~~~q 1937 (2220)
T KOG3598|consen 1924 AAAPTSWNAPIANQ 1937 (2220)
T ss_pred hcCCccccccchhc
Confidence 56777777755444
No 115
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=38.90 E-value=1.1e+03 Score=31.28 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=9.8
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 000094 876 WGQGRYRGNVHPPYPDRI 893 (2264)
Q Consensus 876 W~~s~s~grp~PPy~~Rm 893 (2264)
.+..++++..+|.+---|
T Consensus 483 lA~r~sH~s~~~t~~~~m 500 (552)
T KOG2129|consen 483 LAERRSHGSSPPTVVVQM 500 (552)
T ss_pred HHHHHhcCCCCcchhhhh
Confidence 334455666666655444
No 116
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton]
Probab=36.03 E-value=1.7e+02 Score=37.30 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.2
Q ss_pred CccccccCCCCCC
Q 000094 304 ITDRDRDHGFSKS 316 (2264)
Q Consensus 304 ~~~r~rd~gfsk~ 316 (2264)
+.+|-|++-|.+.
T Consensus 51 ~~~~~~~~a~~ee 63 (430)
T KOG1425|consen 51 IKDRKRDRAEPEE 63 (430)
T ss_pred HHHHHHHhcCcch
Confidence 4445555544443
No 117
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=35.68 E-value=8.5e+02 Score=34.30 Aligned_cols=7 Identities=29% Similarity=0.938 Sum_probs=3.5
Q ss_pred CCCcccc
Q 000094 291 SDWADDE 297 (2264)
Q Consensus 291 sdwadde 297 (2264)
-.||-+-
T Consensus 511 eEWaga~ 517 (1424)
T KOG4572|consen 511 EEWAGAH 517 (1424)
T ss_pred HHHHHhh
Confidence 3566543
No 118
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.51 E-value=1.3e+03 Score=33.63 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.8
Q ss_pred CcccCCCcccccccccc
Q 000094 404 GICERPSSLNREANKET 420 (2264)
Q Consensus 404 GIg~rp~SR~Rg~SKkS 420 (2264)
|+|.|++.-+|+.+.+.
T Consensus 85 glG~rAs~tnRgsslK~ 101 (1074)
T KOG0250|consen 85 GLGGRASATNRGSSLKD 101 (1074)
T ss_pred hhccccccccchhhHHH
Confidence 67789999999998443
No 119
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.53 E-value=1.8e+02 Score=38.45 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=7.7
Q ss_pred cCCCCCCccccccc
Q 000094 374 REGREGNMWRASSS 387 (2264)
Q Consensus 374 reg~e~nsWr~~sp 387 (2264)
|-||+||+-.++-|
T Consensus 350 R~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 350 RAGREGNAIVFLNP 363 (567)
T ss_pred hccCccceEEEecc
Confidence 44666665555544
No 120
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=34.46 E-value=65 Score=40.49 Aligned_cols=58 Identities=31% Similarity=0.637 Sum_probs=37.0
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC-----------------C----------CCCCCCCCCCCCCCCCCCCCCCc
Q 000094 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP-----------------A----------GGGVSGAGQRPGSSGTGWTKPGT 123 (2264)
Q Consensus 71 klsvp~plnlpslrkeh~~~ds~g~~~~~-----------------~----------~~~~~g~~~~p~~sg~gwtkp~~ 123 (2264)
.-.||||-..||.++...-||--|+-||. . ||-|+|-|.+-...|.||-+|+.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrgggkg~f~~~~~~~~~~~eqgg~Rgg~Gg~~gGrGgGRGggG~GGGggyqqp~~ 389 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGGKGTFDRPKTHEEQVLEQGGSRGGSGGNWGGRGGGRGGGGRGGGGGYQQPQQ 389 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCCCCCCcCccccccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchh
Confidence 34589999999999988888876654433 0 11122333344556689998876
Q ss_pred ccccc
Q 000094 124 AVGSD 128 (2264)
Q Consensus 124 ~~~~~ 128 (2264)
--.+-
T Consensus 390 ~~~~h 394 (465)
T KOG3973|consen 390 QQQQH 394 (465)
T ss_pred hhhcc
Confidence 55443
No 121
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=33.78 E-value=7.5e+02 Score=31.07 Aligned_cols=9 Identities=33% Similarity=0.172 Sum_probs=3.9
Q ss_pred CCCCCCCCc
Q 000094 735 SDSSGLHRS 743 (2264)
Q Consensus 735 sDSss~eR~ 743 (2264)
.|+++..+.
T Consensus 150 VDTSFLPDr 158 (331)
T KOG2894|consen 150 VDTSFLPDR 158 (331)
T ss_pred cccccCCch
Confidence 344444444
No 122
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=33.78 E-value=23 Score=48.87 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=3.5
Q ss_pred cccceeec
Q 000094 1130 MMSNLVLG 1137 (2264)
Q Consensus 1130 ~~~~~vlg 1137 (2264)
+||.|..|
T Consensus 873 l~dpla~g 880 (982)
T PF03154_consen 873 LVDPLAAG 880 (982)
T ss_pred ccchhccc
Confidence 44444433
No 123
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=33.56 E-value=5.6e+02 Score=29.23 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000094 565 DPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAE 644 (2264)
Q Consensus 565 Ek~REEeErELERreeeEEEERER~EEEKEREeEEaRKEEEEReReeREEEERRRReEEEeRErEEEEEQEReEaERREE 644 (2264)
++.+.+.+++.++...+.+++.....++.+++.++......++.+.+.+...++.........+......++.--..--+
T Consensus 8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~ 87 (188)
T PRK02292 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRN 87 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 000094 645 EQRIA 649 (2264)
Q Consensus 645 EERkR 649 (2264)
+.+.+
T Consensus 88 ~a~~k 92 (188)
T PRK02292 88 QVEDE 92 (188)
T ss_pred HHHHH
No 124
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=32.80 E-value=1.8e+02 Score=38.49 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=4.4
Q ss_pred CCccccccc
Q 000094 347 RDSETGKVS 355 (2264)
Q Consensus 347 r~~e~~k~~ 355 (2264)
+||--|++-
T Consensus 254 ~Da~gG~ah 262 (591)
T KOG2505|consen 254 HDAGGGAAH 262 (591)
T ss_pred hhccCCccc
Confidence 455444444
No 125
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=31.20 E-value=1.1e+02 Score=44.30 Aligned_cols=18 Identities=11% Similarity=-0.215 Sum_probs=8.1
Q ss_pred CCCcccchhccccccCCc
Q 000094 465 NPWEQYGSEQYNRFRGDA 482 (2264)
Q Consensus 465 t~DEay~idQynrYrggA 482 (2264)
+.+..++--|++-|+.+.
T Consensus 2032 ~~ps~~~~~q~m~~~~q~ 2049 (2220)
T KOG3598|consen 2032 MGPSMSGMNQNMGGMNQS 2049 (2220)
T ss_pred cCCcccccccchhhhhcc
Confidence 444455544444444433
No 126
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.52 E-value=2.1e+02 Score=37.78 Aligned_cols=6 Identities=50% Similarity=0.933 Sum_probs=2.6
Q ss_pred cCCCCC
Q 000094 310 DHGFSK 315 (2264)
Q Consensus 310 d~gfsk 315 (2264)
|-||-+
T Consensus 171 dmgFe~ 176 (567)
T KOG0345|consen 171 DMGFEA 176 (567)
T ss_pred cccHHH
Confidence 444433
No 127
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=29.02 E-value=18 Score=47.03 Aligned_cols=8 Identities=25% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CCcccccc
Q 000094 379 GNMWRASS 386 (2264)
Q Consensus 379 ~nsWr~~s 386 (2264)
.++||.++
T Consensus 236 ~~s~rqlS 243 (495)
T PF12004_consen 236 DFSRRQLS 243 (495)
T ss_dssp --------
T ss_pred chhhhhcc
Confidence 44555544
No 128
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.76 E-value=1.7e+03 Score=32.19 Aligned_cols=126 Identities=21% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000094 548 VGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETRE 627 (2264)
Q Consensus 548 ~~~vKKKkEeaKqaEeEEk~REEeErELERreeeEEEERER~EEEKEREeEEaRKEEEEReReeREEEERRRReEEEeRE 627 (2264)
+..+.+|.+.++.+..|++.|. .|+++..-..|.-.+=+-+..++.....++..+++ .+.++..+.+.+..++...
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl---~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR-~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKL---KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRAR-KEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000094 628 AVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEE 677 (2264)
Q Consensus 628 rEEEEEQEReEaERREEEERkREEEEerRREEEEERRKEEEEeKRrEeEE 677 (2264)
-+...|-.-++++-.+|...--+.+-+..++.-++-.-..|-.+.+-++.
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 129
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=28.40 E-value=1.6e+03 Score=30.28 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=5.8
Q ss_pred CCCccchhhhH
Q 000094 539 GRDPFSAGLVG 549 (2264)
Q Consensus 539 grDpfsa~l~~ 549 (2264)
..||....-..
T Consensus 78 ~pDPLsPgE~~ 88 (508)
T PF00901_consen 78 PPDPLSPGEQG 88 (508)
T ss_pred CCCCCCHhHHH
Confidence 56666544433
No 130
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.05 E-value=2e+03 Score=31.80 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCCC
Q 000094 495 SGGRGFPHNDPMHNF 509 (2264)
Q Consensus 495 ~GgkGll~nD~llnF 509 (2264)
.||.....++.|..+
T Consensus 662 TGGs~~~~a~~L~~l 676 (1174)
T KOG0933|consen 662 TGGSRSKGADLLRQL 676 (1174)
T ss_pred cCCCCCCcccHHHHH
Confidence 455555566655444
No 131
>PLN03188 kinesin-12 family protein; Provisional
Probab=27.70 E-value=1.7e+03 Score=33.18 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=5.7
Q ss_pred CccccCCCCCCC
Q 000094 70 PKLSVPPPLNLP 81 (2264)
Q Consensus 70 ~klsvp~plnlp 81 (2264)
+||-.|-|.+.|
T Consensus 65 ~~~~sp~p~~pp 76 (1320)
T PLN03188 65 AKLKSPLPPRPP 76 (1320)
T ss_pred ccccCCCCCCCC
Confidence 444444455544
No 132
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.56 E-value=2e+03 Score=32.15 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=9.2
Q ss_pred cceeEeeecCCccCCC
Q 000094 1658 SGVVRVFEQPGIEAPS 1673 (2264)
Q Consensus 1658 sg~vrvf~q~gie~p~ 1673 (2264)
-.|.+.|++.|||.|-
T Consensus 1063 ~~I~~~F~~~GIeIPf 1078 (1109)
T PRK10929 1063 QLILAGFREHGIDMPF 1078 (1109)
T ss_pred HHHHHHHHHCCCcCCC
Confidence 3455566666666654
No 133
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=26.07 E-value=47 Score=41.65 Aligned_cols=19 Identities=47% Similarity=0.835 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCCCCCCc
Q 000094 36 HSGYYGSNRARPTGGGGGG 54 (2264)
Q Consensus 36 ~~~~~~~~~~~~~~~~~gg 54 (2264)
+||+.|..+|.+||||+||
T Consensus 441 gggr~gggrgrgggggrg~ 459 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGG 459 (465)
T ss_pred CCCCCCCCCCCCCCCCCcc
Confidence 4444444444444444554
No 134
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.95 E-value=1.7e+03 Score=29.84 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=8.7
Q ss_pred ccCCCccc--cchhhhc
Q 000094 714 ADVGDWED--GERMVER 728 (2264)
Q Consensus 714 ad~dDwEd--~eRmvDR 728 (2264)
+..++|.. .++.++.
T Consensus 200 K~rG~WGE~qLerILE~ 216 (475)
T PRK10361 200 KTQGNWGEVVLTRVLEA 216 (475)
T ss_pred CcCcchHHHHHHHHHHH
Confidence 45677866 3555553
No 135
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=25.70 E-value=9.1e+02 Score=27.51 Aligned_cols=74 Identities=31% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000094 598 ELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQK 671 (2264)
Q Consensus 598 EEaRKEEEEReReeREEEERRRReEEEeRErEEEEEQEReEaERREEEERkREEEEerRREEEEERRKEEEEeK 671 (2264)
..+++.+++....+......+.+..++.-.+-.+.-++.+.++..+...+.++.++-+++..+++.++...+.+
T Consensus 57 ~vAk~~Q~eEd~~a~~~~~~~~~e~Ee~D~e~Ar~iqe~l~r~~e~~r~~Ee~de~iA~~Lqe~e~~~~~r~~k 130 (132)
T PF15295_consen 57 RVAKQEQEEEDERAQALRQQQQREIEEQDEEYAREIQEELQREAEEQRQQEEEDEEIARRLQEEERQEERRRSK 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
No 136
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=25.14 E-value=1.8e+03 Score=29.74 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=19.8
Q ss_pred CCccccccccCCCCchh-hhcccchh-Hhhhcchhhcc
Q 000094 185 DFPSLQAALPAASGSEK-KQKDGFSQ-KQKQGMSQELG 220 (2264)
Q Consensus 185 dfpsl~a~~p~~~~~~~-k~~~~~~q-k~k~~~~~~~~ 220 (2264)
|.|.--.+-..+|-..| +.|..--. .-|..|++++-
T Consensus 20 dSP~cmEtssttSdl~QnEikNvkRenEsk~Tlsed~y 57 (527)
T PF15066_consen 20 DSPFCMETSSTTSDLPQNEIKNVKRENESKFTLSEDIY 57 (527)
T ss_pred CCcceeeccccccccchHHhhhhhccCcccchhhHHHH
Confidence 66776667666665444 33322221 34577777754
No 137
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=25.14 E-value=7.8e+02 Score=34.01 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=25.7
Q ss_pred ccCCCCCcccccchhhhhcc--ccccccCCCCcccceeeccccceeecC
Q 000094 1100 EEDVPEGDDENIELTQEFEG--IHLEEKGSPHMMSNLVLGFNEGVEVPM 1146 (2264)
Q Consensus 1100 ~edei~~~deni~l~~e~~~--~hl~~k~~p~~~~~~vlgf~egv~v~m 1146 (2264)
+.+-|.++=..=|...||+. .-+.++.-|..+|..+-|...=+=.+|
T Consensus 585 q~~li~~AFA~DdV~~eF~~eK~~~~e~e~pk~~~~~LPGWG~W~G~g~ 633 (735)
T PF04615_consen 585 QRELIREAFAGDDVVAEFEKEKEEEIEEEKPKEIDLTLPGWGSWAGPGI 633 (735)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhhhCCcccccCCCCcccccCCCc
Confidence 44555555223355566763 223355667777887778765333333
No 138
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.36 E-value=2.2e+03 Score=30.51 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=4.1
Q ss_pred ccccccc
Q 000094 349 SETGKVS 355 (2264)
Q Consensus 349 ~e~~k~~ 355 (2264)
|=+||.+
T Consensus 34 nGsGKSS 40 (908)
T COG0419 34 NGAGKSS 40 (908)
T ss_pred CCCcHHH
Confidence 5566655
No 139
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=2.1e+02 Score=36.18 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=6.3
Q ss_pred ccccCCCCCCCCC
Q 000094 909 RYSMRHPRVLPPP 921 (2264)
Q Consensus 909 RYS~rqPrVlPpP 921 (2264)
|=-|.-||-.+-|
T Consensus 403 ~gA~~n~~~anKp 415 (469)
T KOG3878|consen 403 RGAVNNPTAANKP 415 (469)
T ss_pred hhhhcCCCCCCCC
Confidence 4444555554444
No 140
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.47 E-value=2.2e+03 Score=31.41 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=7.8
Q ss_pred CccccccccCCCCchh
Q 000094 186 FPSLQAALPAASGSEK 201 (2264)
Q Consensus 186 fpsl~a~~p~~~~~~~ 201 (2264)
|=-+|+-|+.+.++++
T Consensus 348 i~~~q~el~~~~~~e~ 363 (1072)
T KOG0979|consen 348 ILDAQAELQETEDPEN 363 (1072)
T ss_pred HHHHHhhhhhcCCccc
Confidence 3344555555555444
No 141
>PHA00727 hypothetical protein
Probab=23.43 E-value=3.7e+02 Score=32.04 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.3
Q ss_pred cCcccc
Q 000094 829 LEPHMD 834 (2264)
Q Consensus 829 ~Di~ld 834 (2264)
.|+.+|
T Consensus 172 l~l~id 177 (278)
T PHA00727 172 LDLTID 177 (278)
T ss_pred eecchh
Confidence 333333
No 142
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=23.21 E-value=1.7e+03 Score=28.66 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=4.6
Q ss_pred cccCCCCCccc
Q 000094 774 AFESGNSSTFI 784 (2264)
Q Consensus 774 ~~~r~~ss~F~ 784 (2264)
.|.+|.-+-|+
T Consensus 272 ~~~dds~~~~~ 282 (426)
T KOG2008|consen 272 AFEDDSCSNFV 282 (426)
T ss_pred hcccchhhccc
Confidence 34444433343
No 143
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.84 E-value=1.1e+03 Score=31.73 Aligned_cols=8 Identities=0% Similarity=0.040 Sum_probs=3.5
Q ss_pred ccchhccc
Q 000094 469 QYGSEQYN 476 (2264)
Q Consensus 469 ay~idQyn 476 (2264)
+|-..++.
T Consensus 69 ~wyd~hre 76 (508)
T KOG0717|consen 69 AWYDSHRE 76 (508)
T ss_pred hhHHHHHH
Confidence 44444444
No 144
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=22.82 E-value=29 Score=43.37 Aligned_cols=41 Identities=34% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 000094 93 SGSNGGPAGGGVSGAGQRPGSSGTGWTKPGTAVGSDQKIND 133 (2264)
Q Consensus 93 ~g~~~~~~~~~~~g~~~~p~~sg~gwtkp~~~~~~~~~~~~ 133 (2264)
-+++|||-|+-++++-.-|+++|.-|..|+.+..++.+.++
T Consensus 14 p~~~~~~dg~e~~~~~~~ps~~~~~~~~~~~p~~~d~~~~~ 54 (489)
T PF07415_consen 14 PSPHGGPDGYEGSNNSQYPSSFGSSWNSPGPPNYEDYPSNS 54 (489)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccCCCCC
Confidence 35678899999999999999999999999998888877764
No 145
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=22.37 E-value=3.6e+02 Score=35.98 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.6
Q ss_pred cCCCCCCC
Q 000094 490 KSSFSSGG 497 (2264)
Q Consensus 490 kss~~~Gg 497 (2264)
...||.|.
T Consensus 306 r~l~F~~~ 313 (591)
T KOG2505|consen 306 RNLFFEGD 313 (591)
T ss_pred cceeecCC
Confidence 33444444
No 146
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=21.69 E-value=6.4e+02 Score=35.19 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=9.7
Q ss_pred CCCCCCCccccccccc
Q 000094 116 TGWTKPGTAVGSDQKI 131 (2264)
Q Consensus 116 ~gwtkp~~~~~~~~~~ 131 (2264)
.-||.++.+-++++.-
T Consensus 72 k~wte~edaedD~d~~ 87 (1185)
T KOG0388|consen 72 KRWTEAEDAEDDDDLY 87 (1185)
T ss_pred cccCChhhcccCchhc
Confidence 4577776655555544
No 147
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=1.3e+03 Score=27.99 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred chhhhHHHHhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 000094 544 SAGLVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEE----------QERALELARREEEERLRVARE 613 (2264)
Q Consensus 544 sa~l~~~vKKKkEeaKqaEeEEk~REEeErELERreeeEEEERER~EEE----------KEREeEEaRKEEEEReReeRE 613 (2264)
.+.+...+++.-....-..........+.+...+......+.+++..++ ...-........-........
T Consensus 93 AqkAFdivkKA~k~l~n~~~rkr~~~~y~~ak~~~~~~~~ekkkklkKegkpt~ieedDp~lfk~av~~~~mklfae~er 172 (250)
T KOG1150|consen 93 AQKAFDIVKKAYKLLENDKIRKRCLDVYTAAKNRLEKVMSEKKKKLKKEGKPTIIEEDDPELFKQAVYKQVMKLFAELER 172 (250)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000094 614 QEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREE 652 (2264)
Q Consensus 614 EEERRRReEEEeRErEEEEEQEReEaERREEEERkREEE 652 (2264)
...++...+.+++++++++|-+++|++++++|-++-.|+
T Consensus 173 kRk~~e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfEE 211 (250)
T KOG1150|consen 173 KRKELEARANEERKRQREEEIEAEEKRKREREWQKNFEE 211 (250)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 148
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=21.45 E-value=1.2e+03 Score=27.78 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000094 611 AREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSD 690 (2264)
Q Consensus 611 eREEEERRRReEEEeRErEEEEEQEReEaERREEEERkREEEEerRREEEEERRKEEEEeKRrEeEERerreEeEeEKrR 690 (2264)
....++--.+..++..+..+++.++..++++++.++...+.+++..+..++.+++-+.++++.+...+...++...+.+.
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKq 86 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQ 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccchhhhhcccchhhc
Q 000094 691 SNSSDIADEKSSGLAKE 707 (2264)
Q Consensus 691 keAEekaKekaea~~kE 707 (2264)
......-........++
T Consensus 87 evi~~vf~~a~~~lv~~ 103 (207)
T PRK01005 87 AVENKIFRESLGEWLEH 103 (207)
T ss_pred HHHHHHHHHHHHHHHHH
No 149
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.20 E-value=2.4e+03 Score=31.01 Aligned_cols=17 Identities=12% Similarity=-0.062 Sum_probs=7.7
Q ss_pred CCCCC-CCcccccccccc
Q 000094 894 YPNPE-TDVISSFGRSRY 910 (2264)
Q Consensus 894 Yqnse-~d~~~sfgR~RY 910 (2264)
.||-. |++-+.|.|.+|
T Consensus 574 ~~~~r~~~~~~~~~~~i~ 591 (1072)
T KOG0979|consen 574 LQNIRQPNGSVFLKRNIA 591 (1072)
T ss_pred HhccccCCCchhHHHHhh
Confidence 44443 444444444444
Done!