Query 000094
Match_columns 2264
No_of_seqs 354 out of 1515
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 15:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 93.4 0.7 2.4E-05 67.9 16.6 19 1530-1548 2804-2822(3245)
2 3vkg_A Dynein heavy chain, cyt 91.7 1.2 4.1E-05 65.6 15.5 6 2049-2054 3179-3184(3245)
3 2zuo_A MVP, major vault protei 88.3 17 0.00058 47.9 20.0 16 340-355 382-399 (861)
4 2dfs_A Myosin-5A; myosin-V, in 85.3 20 0.00067 48.7 19.3 20 154-173 241-260 (1080)
5 2dfs_A Myosin-5A; myosin-V, in 85.1 6.9 0.00024 52.9 14.9 20 174-193 356-375 (1080)
6 2zuo_A MVP, major vault protei 84.7 26 0.00087 46.4 18.9 8 474-481 542-549 (861)
7 1i84_S Smooth muscle myosin he 84.5 1.3 4.4E-05 60.1 7.8 21 154-174 268-288 (1184)
8 1f5n_A Interferon-induced guan 80.1 22 0.00074 45.5 15.9 7 56-62 42-48 (592)
9 1i84_S Smooth muscle myosin he 79.9 7.2 0.00025 53.0 12.2 21 173-193 381-401 (1184)
10 4f61_I Stathmin-like domain R4 77.9 78 0.0027 36.7 17.7 9 549-557 45-53 (240)
11 2b5u_A Colicin E3; high resolu 72.5 1.3E+02 0.0046 37.9 19.0 10 538-547 278-287 (551)
12 2pk2_A Cyclin-T1, protein TAT; 45.5 4.4 0.00015 48.4 0.0 13 43-55 292-304 (358)
13 3iyk_A VP5; icosahedral virus; 34.6 8.3E+02 0.029 31.1 17.3 11 539-549 84-94 (526)
14 3iyk_A VP5; icosahedral virus; 23.9 1.2E+03 0.042 29.7 17.0 13 543-555 91-103 (526)
15 2pk2_A Cyclin-T1, protein TAT; 20.6 21 0.00072 42.7 0.0 11 45-55 297-307 (358)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.36 E-value=0.7 Score=67.89 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=10.9
Q ss_pred CCCCCCCCccccceeeeeh
Q 000094 1530 AVGFPRRPRRQRTEFRVRE 1548 (2264)
Q Consensus 1530 ~~g~~r~~~~~rtefrvre 1548 (2264)
+-||.+.+-+--.+|++.-
T Consensus 2804 plGWn~~YeFn~sDl~~s~ 2822 (3245)
T 3vkg_A 2804 PLGWTKFFEFNDADLRGAL 2822 (3245)
T ss_dssp TTSCSSCCCCCHHHHHHHH
T ss_pred ccccCcccccchHHHHHHH
Confidence 4466666665555555443
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.70 E-value=1.2 Score=65.55 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=3.0
Q ss_pred CCCccc
Q 000094 2049 TPPISL 2054 (2264)
Q Consensus 2049 tp~is~ 2054 (2264)
.|+|-+
T Consensus 3179 lPvi~l 3184 (3245)
T 3vkg_A 3179 ISIATL 3184 (3245)
T ss_dssp CCCEEE
T ss_pred CCceeE
Confidence 455544
No 3
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=88.26 E-value=17 Score=47.93 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=9.8
Q ss_pred cccccCc--CCccccccc
Q 000094 340 VFERWGQ--RDSETGKVS 355 (2264)
Q Consensus 340 ~~~~~g~--r~~e~~k~~ 355 (2264)
|-+..|- ||..+|||.
T Consensus 382 LdenEgIYVrd~kTG~VR 399 (861)
T 2zuo_A 382 LDQNEGIYVQDVKTGKVR 399 (861)
T ss_dssp CCTTCEEEEEETTTCCEE
T ss_pred eCCCceEEEEEcCCccEE
Confidence 3344453 777788865
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.29 E-value=20 Score=48.74 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=11.0
Q ss_pred cccCCCCCcCCCCCCccCCC
Q 000094 154 VYVPPSVRSGTVGPALSSFA 173 (2264)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2264)
.|+=--.||-...+.++.||
T Consensus 241 ~yLLEKsRVv~q~~~ERnfH 260 (1080)
T 2dfs_A 241 TYLLEKSRVVFQAEEERNYH 260 (1080)
T ss_dssp EECCCCGGGTCCCTTCCSBH
T ss_pred eEeecCceeeccCCCCCcch
Confidence 45555555555555666665
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.06 E-value=6.9 Score=52.94 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=12.9
Q ss_pred ccccccccccCCCccccccc
Q 000094 174 PAEKASVLRGEDFPSLQAAL 193 (2264)
Q Consensus 174 ~~e~~~vlrgedfpsl~a~~ 193 (2264)
.+++|+-|=|=|--.|..+|
T Consensus 356 ~l~~~a~LLgv~~~~L~~~l 375 (1080)
T 2dfs_A 356 PLTIFCDLMGVDYEEMAHWL 375 (1080)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHh
Confidence 56666666666666666665
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=84.68 E-value=26 Score=46.37 Aligned_cols=8 Identities=25% Similarity=0.073 Sum_probs=5.4
Q ss_pred ccccccCC
Q 000094 474 QYNRFRGD 481 (2264)
Q Consensus 474 QynrYrgg 481 (2264)
.||||=..
T Consensus 542 sYnW~F~~ 549 (861)
T 2zuo_A 542 AYNWHFEL 549 (861)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 48887654
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=84.46 E-value=1.3 Score=60.05 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=12.7
Q ss_pred cccCCCCCcCCCCCCccCCCc
Q 000094 154 VYVPPSVRSGTVGPALSSFAP 174 (2264)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~~ 174 (2264)
.|+=--.||-...+.++.||.
T Consensus 268 ~ylLEksRv~~q~~~Ernfhi 288 (1184)
T 1i84_S 268 TYLLEKSRAIRQAKDERTFHI 288 (1184)
T ss_dssp ECCCCCGGGSCCCTTCCCCTH
T ss_pred EeecCCceeeeecCCCCchhh
Confidence 455555566666666677663
No 8
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=80.15 E-value=22 Score=45.46 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.5
Q ss_pred EEeeccC
Q 000094 56 LVLSRPR 62 (2264)
Q Consensus 56 ~vlsr~r 62 (2264)
+|+++|+
T Consensus 42 aivG~pn 48 (592)
T 1f5n_A 42 AIVGLYR 48 (592)
T ss_dssp EEEEBTT
T ss_pred EEECCCC
Confidence 3555554
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.85 E-value=7.2 Score=52.98 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=14.5
Q ss_pred CccccccccccCCCccccccc
Q 000094 173 APAEKASVLRGEDFPSLQAAL 193 (2264)
Q Consensus 173 ~~~e~~~vlrgedfpsl~a~~ 193 (2264)
..+++|+-|=|=|--.|..+|
T Consensus 381 ~~~~~~a~lLg~~~~~l~~~l 401 (1184)
T 1i84_S 381 TAAQKVCHLMGINVTDFTRSI 401 (1184)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHh
Confidence 456777777777766666666
No 10
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=77.87 E-value=78 Score=36.67 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=4.3
Q ss_pred HHHHhhhhh
Q 000094 549 GVVKKKKDV 557 (2264)
Q Consensus 549 ~~vKKKkEe 557 (2264)
..+.+|.++
T Consensus 45 eEIqkKLeA 53 (240)
T 4f61_I 45 EEIQKKLEA 53 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444555444
No 11
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=72.53 E-value=1.3e+02 Score=37.89 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=6.0
Q ss_pred CCCCccchhh
Q 000094 538 DGRDPFSAGL 547 (2264)
Q Consensus 538 dgrDpfsa~l 547 (2264)
.+.+|.+.++
T Consensus 278 Sg~ePlYISv 287 (551)
T 2b5u_A 278 SGHNAVYVSV 287 (551)
T ss_dssp GCCCCEEEEE
T ss_pred CCCCceEEEE
Confidence 3677875443
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=45.54 E-value=4.4 Score=48.41 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCce
Q 000094 43 NRARPTGGGGGGM 55 (2264)
Q Consensus 43 ~~~~~~~~~~ggm 55 (2264)
++|++||||+|||
T Consensus 292 ~~~~~~~~~~~~~ 304 (358)
T 2pk2_A 292 SGGGSGGGTSGGV 304 (358)
T ss_dssp -------------
T ss_pred CCCCCCCCCCCCC
Confidence 3444444444444
No 13
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=34.63 E-value=8.3e+02 Score=31.15 Aligned_cols=11 Identities=45% Similarity=0.601 Sum_probs=5.4
Q ss_pred CCCccchhhhH
Q 000094 539 GRDPFSAGLVG 549 (2264)
Q Consensus 539 grDpfsa~l~~ 549 (2264)
..||....-..
T Consensus 84 ~pDPLsPgE~~ 94 (526)
T 3iyk_A 84 IPDPLSPGERG 94 (526)
T ss_pred CCCCCCHhHHH
Confidence 55666444333
No 14
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=23.89 E-value=1.2e+03 Score=29.69 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=5.4
Q ss_pred cchhhhHHHHhhh
Q 000094 543 FSAGLVGVVKKKK 555 (2264)
Q Consensus 543 fsa~l~~~vKKKk 555 (2264)
-+..+...+++-+
T Consensus 91 gE~~~~~Kl~eLE 103 (526)
T 3iyk_A 91 GERGIQAKLKELE 103 (526)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444333
No 15
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=20.60 E-value=21 Score=42.68 Aligned_cols=11 Identities=36% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCCCCCCCCce
Q 000094 45 ARPTGGGGGGM 55 (2264)
Q Consensus 45 ~~~~~~~~ggm 55 (2264)
||+|+||+||-
T Consensus 297 ~~~~~~~~~~~ 307 (358)
T 2pk2_A 297 GGGTSGGVPGQ 307 (358)
T ss_dssp -----------
T ss_pred CCCCCCCCCCc
Confidence 33344444433
Done!