Query 000094
Match_columns 2264
No_of_seqs 354 out of 1515
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 15:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000094.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000094hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2es4d1 a.137.15.1 (D:53-332) 37.6 16 0.0011 38.7 5.5 6 475-480 77-82 (280)
2 d1ejxb_ b.85.3.1 (B:) Urease, 15.9 20 0.0015 34.5 0.9 13 2077-2089 38-50 (101)
3 d1e9ya1 b.85.3.1 (A:106-238) U 13.7 25 0.0018 35.2 0.9 13 2077-2089 38-50 (133)
4 d4ubpb_ b.85.3.1 (B:) Urease, 13.2 26 0.0019 34.6 0.9 13 2077-2089 40-52 (122)
5 d1k47a2 d.58.26.4 (A:195-329) 7.8 70 0.0051 30.6 1.8 14 48-61 98-111 (135)
6 d2ap3a1 a.24.27.1 (A:12-196) H 4.4 1E+03 0.074 20.7 12.5 154 547-700 28-181 (185)
7 d1oopa_ b.121.4.1 (A:) Swine v 3.4 1.7E+02 0.012 32.0 1.4 22 2163-2184 186-208 (271)
8 d2vj3a2 g.3.11.1 (A:453-491) N 2.8 1.5E+02 0.011 23.7 -0.0 18 2126-2144 15-34 (39)
9 d1ncqa_ b.121.4.1 (A:) Rhinovi 2.6 2.3E+02 0.016 30.9 1.3 22 2163-2184 188-210 (273)
10 d1d4m1_ b.121.4.1 (1:) Human e 2.5 1.8E+02 0.013 31.9 0.3 22 2163-2184 199-221 (284)
No 1
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) {Burkholderia glumae [TaxId: 337]}
Probab=37.57 E-value=16 Score=38.71 Aligned_cols=6 Identities=33% Similarity=1.077 Sum_probs=2.7
Q ss_pred cccccC
Q 000094 475 YNRFRG 480 (2264)
Q Consensus 475 ynrYrg 480 (2264)
+.+|+.
T Consensus 77 ~~~Y~~ 82 (280)
T d2es4d1 77 WRRYRA 82 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 2
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=15.89 E-value=20 Score=34.47 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.8
Q ss_pred CCCCccccCccCC
Q 000094 2077 SHFPLYEMNPLLG 2089 (2264)
Q Consensus 2077 shf~~~emn~mlg 2089 (2264)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (101)
T d1ejxb_ 38 SHYHFAEVNPALK 50 (101)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChHHcCcccc
Confidence 8999999999885
No 3
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=13.71 E-value=25 Score=35.19 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000094 2077 SHFPLYEMNPLLG 2089 (2264)
Q Consensus 2077 shf~~~emn~mlg 2089 (2264)
|||.|||.|+.|=
T Consensus 38 SH~HF~E~N~aL~ 50 (133)
T d1e9ya1 38 SHFHFFEVNRCLD 50 (133)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 4
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=13.24 E-value=26 Score=34.61 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=11.9
Q ss_pred CCCCccccCccCC
Q 000094 2077 SHFPLYEMNPLLG 2089 (2264)
Q Consensus 2077 shf~~~emn~mlg 2089 (2264)
|||.|||.|+.|-
T Consensus 40 SH~HF~E~N~aL~ 52 (122)
T d4ubpb_ 40 SHIHFVEVNKELL 52 (122)
T ss_dssp TTSCGGGSCTTEE
T ss_pred cccChhhcCcccc
Confidence 8999999999985
No 5
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=7.82 E-value=70 Score=30.58 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=10.0
Q ss_pred CCCCCCceEEeecc
Q 000094 48 TGGGGGGMLVLSRP 61 (2264)
Q Consensus 48 ~~~~~ggm~vlsr~ 61 (2264)
|+||||+|++|.++
T Consensus 98 GaGgGG~~i~l~~~ 111 (135)
T d1k47a2 98 GAGGGDCGIALSFD 111 (135)
T ss_dssp SSCSSSEEEEEECS
T ss_pred cCcCCCeEEEEecC
Confidence 44557888888864
No 6
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=4.38 E-value=1e+03 Score=20.73 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000094 547 LVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETR 626 (2264)
Q Consensus 547 l~~~vKKKkEeaKqaEeEEk~REEeErELERreeeEEEERER~EEEKEREeEEaRKEEEEReReeREEEERRRReEEEeR 626 (2264)
...+.....+..........................................................+...........
T Consensus 28 ~~k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (185)
T d2ap3a1 28 GKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQL 107 (185)
T ss_dssp HHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhc
Q 000094 627 EAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEK 700 (2264)
Q Consensus 627 ErEEEEEQEReEaERREEEERkREEEEerRREEEEERRKEEEEeKRrEeEERerreEeEeEKrRkeAEekaKek 700 (2264)
...........+......+.......+.............................+...+..........+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek 181 (185)
T d2ap3a1 108 DDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEK 181 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 7
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}
Probab=3.43 E-value=1.7e+02 Score=31.97 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=0.0
Q ss_pred cccCccCccccccccccccc-cc
Q 000094 2163 YNHFAPVGQFGQVGLSFMGT-YI 2184 (2264)
Q Consensus 2163 ynhfapvgqfgq~gl~fmg~-yi 2184 (2264)
|+||..-|++|+.-+-+||+ +|
T Consensus 186 y~~f~~~~~YG~~p~N~mGtl~v 208 (271)
T d1oopa_ 186 WARFDKQGTYGISTLNNMGTLYM 208 (271)
T ss_dssp BSSTTSCSCBSGGGTCCCCEEEE
T ss_pred CCCCCCCCCCccccccCCeeEEE
No 8
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.76 E-value=1.5e+02 Score=23.70 Aligned_cols=18 Identities=33% Similarity=0.741 Sum_probs=0.0
Q ss_pred cCCCcccccc--CCCCCCCCc
Q 000094 2126 CHSGVDSFYG--PPAGYTGPF 2144 (2264)
Q Consensus 2126 ~hsgvdsfy~--pp~gf~gpf 2144 (2264)
|+..+++|.= || ||+|++
T Consensus 15 C~~~~~~y~C~C~~-G~~G~~ 34 (39)
T d2vj3a2 15 CLDQIGEFQCICMP-GYEGVH 34 (39)
T ss_dssp EEECSSCEEEECCT-TEESSS
T ss_pred EECCCCCEEEeCCC-CCccCc
No 9
>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Probab=2.61 E-value=2.3e+02 Score=30.89 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=0.0
Q ss_pred cccCccCccccccccccccc-cc
Q 000094 2163 YNHFAPVGQFGQVGLSFMGT-YI 2184 (2264)
Q Consensus 2163 ynhfapvgqfgq~gl~fmg~-yi 2184 (2264)
|.||..-|.+|+.-+-.||+ +|
T Consensus 188 y~~f~~~~~YG~~p~n~mGtl~i 210 (273)
T d1ncqa_ 188 YSHDDAETQYGITVLNHMGSMAF 210 (273)
T ss_dssp CSSSCSSSCCSGGGTCCCCEEEE
T ss_pred CCCCCCCCcccccccCcceeEEE
No 10
>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]}
Probab=2.53 E-value=1.8e+02 Score=31.94 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=0.0
Q ss_pred cccCccCccccccccccccc-cc
Q 000094 2163 YNHFAPVGQFGQVGLSFMGT-YI 2184 (2264)
Q Consensus 2163 ynhfapvgqfgq~gl~fmg~-yi 2184 (2264)
|.||..-|+.|+.-+-+||+ ||
T Consensus 199 y~~f~~~~~YG~~~~N~mGtl~~ 221 (284)
T d1d4m1_ 199 WSNFDQRGSYGYNTLNNLGHIYV 221 (284)
T ss_dssp EEETTTEEEESGGGGCCCCEEEE
T ss_pred cCCCCCCCCCCccccccceeEEE
Done!