Your job contains 1 sequence.
>000096
MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG
KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID
KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL
VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAA
PVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVT
DDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTE
EEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQ
QSKEVTPPSKRGRGRPRRADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVS
GVSGSAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRR
GKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVS
PSAVKGQSGTIDPSSAVAALNSELNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGV
TPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKI
QVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLG
NVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDS
ITEPYTGSTNTEGISNTIHHVPGAVAARTPSISTSAPAASLSIPPQASVSVPVKRHGRKT
PTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVN
DVARVMKEIFSETCSSKAKTGDSSLNEGKDASIRALSSSSAIAEVAKKQSSDDKTCSVTP
TVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIEN
IANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEA
FEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKN
TPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGN
TSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTD
VGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDAIVNNLLETPLDIK
SIGGPIVSMKAADVADADHPLETAVELGSPVNSCTVEPSAEAAERSSETIAERSLDNPLS
IEGIGLSVSAKTDDVADHPVEPPGCDKSDIASMEAEAAVSSSETIVESQVLTKALDVGIA
LDKTEIATSCDTASLDDSHDNGNVEVLCGGTGDKKADCKMEPDCLVASDSVNMELVPRDF
GVGRRDGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVI
VPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDEL
VDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKG
SIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAE
AGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMG
VSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKECAAEAADQMCV
SEGCVVVTEKLSEDLGLNSSSSETKEKKIEGSSEKDPVNSSVTVEDSKGFEAEACDQLHV
LRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEE
LGLPSSPMVVEEEKIEGLSEEEPSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDL
GLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPV
PEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE
GMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESKGSEAD
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000096
(2260 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2062840 - symbol:SYD "SPLAYED" species:3702 "A... 1605 2.0e-180 5
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 629 3.6e-61 4
UNIPROTKB|E1C2F7 - symbol:E1C2F7 "Uncharacterized protein... 655 4.9e-59 2
MGI|MGI:99603 - symbol:Smarca2 "SWI/SNF related, matrix a... 653 2.3e-58 2
RGD|1302988 - symbol:Smarca2 "SWI/SNF related, matrix ass... 653 4.0e-58 2
UNIPROTKB|E9PTG1 - symbol:Smarca2 "Protein Smarca2" speci... 653 4.0e-58 2
UNIPROTKB|A5PKK5 - symbol:SMARCA2 "SMARCA2 protein" speci... 651 9.4e-58 2
UNIPROTKB|E2RKP4 - symbol:SMARCA2 "Uncharacterized protei... 651 9.5e-58 2
UNIPROTKB|F1SJG5 - symbol:SMARCA2 "Uncharacterized protei... 651 9.5e-58 2
UNIPROTKB|P51531 - symbol:SMARCA2 "Probable global transc... 651 1.0e-57 2
UNIPROTKB|J9P5P2 - symbol:SMARCA2 "Uncharacterized protei... 651 1.3e-57 2
UNIPROTKB|D4A4J2 - symbol:Smarca2 "Protein Smarca2" speci... 653 1.3e-57 2
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 619 2.7e-57 2
UNIPROTKB|F1M6Y4 - symbol:Smarca4 "Transcription activato... 638 2.8e-56 2
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 617 4.5e-56 4
ZFIN|ZDB-GENE-030131-5964 - symbol:smarca2 "SWI/SNF relat... 636 1.1e-55 3
UNIPROTKB|E2RJ89 - symbol:SMARCA4 "Uncharacterized protei... 630 1.3e-55 2
MGI|MGI:88192 - symbol:Smarca4 "SWI/SNF related, matrix a... 629 3.0e-55 3
UNIPROTKB|A7Z019 - symbol:SMARCA4 "Transcription activato... 629 3.7e-55 3
RGD|621728 - symbol:Smarca4 "SWI/SNF related, matrix asso... 629 3.8e-55 3
UNIPROTKB|G3V790 - symbol:Smarca4 "SWI/SNF related, matri... 629 3.8e-55 3
ZFIN|ZDB-GENE-030605-1 - symbol:smarca4 "SWI/SNF related,... 622 2.3e-54 3
FB|FBgn0000212 - symbol:brm "brahma" species:7227 "Drosop... 625 2.3e-54 3
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 579 1.1e-53 3
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 579 1.1e-53 3
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 608 4.0e-53 3
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 577 5.9e-53 2
UNIPROTKB|F1MJ46 - symbol:SMARCA4 "Transcription activato... 606 6.0e-53 2
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 582 1.1e-52 2
UNIPROTKB|K7GT64 - symbol:LOC100622433 "Uncharacterized p... 590 1.6e-52 2
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 598 2.4e-52 3
UNIPROTKB|D4AA07 - symbol:Smarca4 "Transcription activato... 596 7.9e-52 2
UNIPROTKB|P51532 - symbol:SMARCA4 "Transcription activato... 590 3.5e-51 2
UNIPROTKB|Q9HBD4 - symbol:SMARCA4 "SMARCA4 isoform 2" spe... 590 3.4e-50 3
SGD|S000005816 - symbol:SNF2 "Catalytic subunit of the SW... 575 1.3e-49 3
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 563 1.6e-49 3
POMBASE|SPCC1620.14c - symbol:snf22 "ATP-dependent DNA he... 553 5.1e-48 2
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 542 5.6e-46 2
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 519 3.0e-45 4
UNIPROTKB|H0YGM3 - symbol:SMARCA4 "Transcription activato... 441 4.4e-45 4
UNIPROTKB|F1PWD8 - symbol:CHD7 "Uncharacterized protein" ... 469 8.8e-43 5
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 484 3.0e-42 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 500 2.0e-41 2
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 500 2.0e-41 2
DICTYBASE|DDB_G0280705 - symbol:DDB_G0280705 "CHR group p... 491 2.1e-41 3
ZFIN|ZDB-GENE-041111-187 - symbol:chd4a "chromodomain hel... 470 2.3e-41 2
MGI|MGI:1344380 - symbol:Chd4 "chromodomain helicase DNA ... 455 3.4e-41 3
ZFIN|ZDB-GENE-070912-179 - symbol:chd7 "chromodomain heli... 477 4.1e-41 3
FB|FBgn0086902 - symbol:kis "kismet" species:7227 "Drosop... 457 4.8e-41 4
UNIPROTKB|F5GWX5 - symbol:CHD4 "Chromodomain-helicase-DNA... 455 4.9e-41 2
UNIPROTKB|Q14839 - symbol:CHD4 "Chromodomain-helicase-DNA... 455 4.9e-41 2
FB|FBgn0262519 - symbol:Mi-2 species:7227 "Drosophila mel... 469 6.0e-41 3
UNIPROTKB|F1SLR5 - symbol:CHD4 "Uncharacterized protein" ... 455 6.3e-41 2
ZFIN|ZDB-GENE-030131-6320 - symbol:chd8 "chromodomain hel... 506 7.0e-41 2
UNIPROTKB|E2RHA0 - symbol:CHD4 "Uncharacterized protein" ... 455 8.0e-41 2
UNIPROTKB|J9NW81 - symbol:CHD4 "Uncharacterized protein" ... 455 8.3e-41 2
UNIPROTKB|F1N544 - symbol:CHD3 "Uncharacterized protein" ... 461 8.9e-41 2
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 473 1.0e-40 1
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 473 1.0e-40 1
UNIPROTKB|E9PU01 - symbol:Chd4 "Protein Chd4" species:101... 455 1.5e-40 3
UNIPROTKB|Q12873 - symbol:CHD3 "Chromodomain-helicase-DNA... 459 1.9e-40 2
UNIPROTKB|F1LM59 - symbol:Chd4 "Protein Chd4" species:101... 455 2.0e-40 3
UNIPROTKB|E9PG89 - symbol:CHD3 "Chromodomain-helicase-DNA... 459 2.0e-40 2
UNIPROTKB|E2RTI2 - symbol:CHD3 "Uncharacterized protein" ... 460 3.0e-40 2
MGI|MGI:2444748 - symbol:Chd7 "chromodomain helicase DNA ... 470 3.8e-40 5
UNIPROTKB|E1BPM4 - symbol:CHD7 "Uncharacterized protein" ... 468 4.5e-40 5
UNIPROTKB|E1BDZ3 - symbol:CHD9 "Uncharacterized protein" ... 472 1.1e-39 4
FB|FBgn0023395 - symbol:Chd3 "Chd3" species:7227 "Drosoph... 476 1.2e-39 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 458 1.5e-39 1
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 462 1.8e-39 1
UNIPROTKB|E2RDK8 - symbol:CHD9 "Uncharacterized protein" ... 472 1.9e-39 3
UNIPROTKB|H0YJG4 - symbol:CHD8 "Chromodomain-helicase-DNA... 480 2.0e-39 3
ZFIN|ZDB-GENE-030131-4532 - symbol:chd4b "chromodomain he... 461 3.4e-39 3
RGD|1311921 - symbol:Chd7 "chromodomain helicase DNA bind... 469 3.9e-39 5
UNIPROTKB|F1N3F6 - symbol:CHD4 "Uncharacterized protein" ... 455 4.0e-39 2
UNIPROTKB|F1NSG3 - symbol:CHD7 "Chromodomain-helicase-DNA... 470 5.2e-39 5
UNIPROTKB|F1ST12 - symbol:CHD3 "Uncharacterized protein" ... 460 5.5e-39 2
UNIPROTKB|F1N8K9 - symbol:CHD1 "Chromodomain-helicase-DNA... 422 5.5e-39 2
RGD|2323132 - symbol:LOC100359912 "SWI/SNF-related matrix... 461 6.9e-39 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 457 7.0e-39 2
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 462 8.0e-39 2
UNIPROTKB|B5DE69 - symbol:chd8 "Chromodomain-helicase-DNA... 469 1.1e-38 2
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 463 1.1e-38 2
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 461 1.2e-38 2
UNIPROTKB|H3BTW3 - symbol:CHD9 "Chromodomain-helicase-DNA... 472 1.4e-38 2
UNIPROTKB|F1NVT7 - symbol:CHD6 "Uncharacterized protein" ... 454 1.6e-38 1
UNIPROTKB|F1M7Q0 - symbol:Chd3 "Protein Chd3" species:101... 455 1.9e-38 3
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 451 1.9e-38 2
UNIPROTKB|Q3L8U1 - symbol:CHD9 "Chromodomain-helicase-DNA... 472 2.0e-38 3
MGI|MGI:1924001 - symbol:Chd9 "chromodomain helicase DNA ... 481 2.2e-38 4
UNIPROTKB|Q06A37 - symbol:CHD7 "Chromodomain-helicase-DNA... 470 4.3e-38 5
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 448 4.9e-38 1
UNIPROTKB|F1RIM3 - symbol:CHD5 "Uncharacterized protein" ... 461 5.0e-38 2
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 475 5.2e-38 3
UNIPROTKB|Q9P2D1 - symbol:CHD7 "Chromodomain-helicase-DNA... 470 6.7e-38 5
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 461 6.7e-38 2
RGD|1594200 - symbol:LOC680231 "similar to chromodomain h... 481 7.1e-38 4
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 458 7.2e-38 2
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 462 8.5e-38 2
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 462 8.5e-38 2
WARNING: Descriptions of 486 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 1605 (570.0 bits), Expect = 2.0e-180, Sum P(5) = 2.0e-180
Identities = 389/791 (49%), Positives = 472/791 (59%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MKRVE+NLGSIGN+K R+VHNSVMELRNICNHPYLSQLH+EEV+ +IPKH+LPPIVRLCG
Sbjct: 1014 MKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCG 1073
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
KLEMLDR+LPKLKATDHRVLFFSTMTRLLDVMEDYLT K Y+YLRLDG TSGGDRGALID
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
FN+ SPFFIFLLSIRAGGVGVNLQAADTVI+FDTDWNPQVDLQAQARAHRIGQK+DVL
Sbjct: 1134 GFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVL 1193
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXX 240
VLRFETV +VEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR+EYLESLLRE KKEE
Sbjct: 1194 VLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKEEDA 1253
Query: 241 XXXXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDG-EPLPPLPSRLV 299
R ESEID+FES+DKQR+E EM TW L+ G G+D +P +PSRLV
Sbjct: 1254 PVLDDDALNDLIARRESEIDIFESIDKQRKENEMETWNTLVHGPGSDSFAHIPSIPSRLV 1313
Query: 300 TDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWT 359
T+DDLK LYE MK+ D P VG+KRK +G LDT YGRGKRAREVRSYEE+ T
Sbjct: 1314 TEDDLKLLYETMKLNDVPMVAKESTVGMKRKDGSMGGLDTHQYGRGKRAREVRSYEEKLT 1373
Query: 360 EEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEXXXXXXXXXXXXXXXXX- 418
EEEFEK+CQ ES DSP+ K EG E+SL +S+ P S++
Sbjct: 1374 EEEFEKLCQTESPDSPQGKGEGSERSLAND-TSNIPVENSSDTLLPTSPTQAITVQPMEP 1432
Query: 419 ----XXXSKEVTPPSKXXXXXXXXADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLP 474
KE T P K DK+ PV L A S T TG + S++A+
Sbjct: 1433 VRPQSHTLKEETQPIKRGRGRPKRTDKALTPVSLSAVSRT------QATGNAISSAATGL 1486
Query: 475 XXXXXXXXXXXAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPS-TPMQPKGRGRRIQSG 533
A H +A +S + P PG QS A P+ TP++ +GRGR G
Sbjct: 1487 DFVSSDKRLEAASHPTSSLALTSPDLSG--P--PGFQSLPASPAPTPIRGRGRGRSRGRG 1542
Query: 534 EQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTA 593
RG+++ VL ++ I + + T+ +E+ + S + VS +P A
Sbjct: 1543 AG----RGRRVEGVLHGSNSSI-TQRTETATSLASDAEATKFALPRSASEI--VSRVPKA 1595
Query: 594 PVPDSVSPSAVKG-QSGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQS 652
+ +P V S T S AA + +L+ + K +
Sbjct: 1596 NEGSTSNPDQVSPVHSATTALRSDKAA-DKDLDAPPGFDSGSHVQTLNVLENSSERKAFA 1654
Query: 653 RKTQS--GGVTPRRRG-KRQALGSPPISD---VSAGPESKSNLQSENNSGGLRLSKSVSM 706
K + GV+ + G +Q L P + + GP N S G SKS S
Sbjct: 1655 VKKRPLIQGVSSQHPGPNKQPLDLPVSTSSTLLGGGPVQNQNAVSSVCDG----SKSPSE 1710
Query: 707 GKQDALSQELSNKIQVQPCGVATS-ADVAGP-DQKPAEQSVRVVQSNQP---INLPATHD 761
G+ Q ++ +++ +D P +P +V ++N P LPA
Sbjct: 1711 GRTYTALQGVTTAPSDATLPMSSQPSDATLPMSSQPVGSTVEAQEANVPSLPAALPAKRR 1770
Query: 762 SSSQPS-GSTP 771
+ PS G TP
Sbjct: 1771 VRNLPSRGETP 1781
Score = 119 (46.9 bits), Expect = 3.6e-180, Sum P(4) = 3.6e-180
Identities = 85/383 (22%), Positives = 146/383 (38%)
Query: 935 SQNKSRDSFGSKTISLRSKQETADVNDVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXX 994
SQ RD+ G+ ++++TADV DVARVMKEIFSET K K G+ S +
Sbjct: 1848 SQEIRRDTSGTGG---SARKQTADVTDVARVMKEIFSETSLLKHKVGEPSATTRTNVPDA 1904
Query: 995 XXXXXXXXXEVAKKQSSDD---KTCSVTPTVETPPPGFNS-PNENPGELTGTKNDASVRG 1050
V ++ D K + + P+ PG+LT SV
Sbjct: 1905 QSPGEMNLHTVETHKAEDSSGLKNQEALYNLSKADKLVSDIPHPVPGDLT---TSGSVAN 1961
Query: 1051 DHTPVSGHTLASKTEALK-PENKAQAGRIE-NIANSSPDDKSLPMVPNLETAPPGFDIPI 1108
+ +A++ E +K P + I+ ++ N+ SL TA +
Sbjct: 1962 KDVDIGSSKVAAENELVKIPGGDVDSSVIQLSLGNTLTAKSSLEKC----TAD---QLLG 2014
Query: 1109 EKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVT 1168
EK +++ + P GE ++ E +S E + S+ +K S
Sbjct: 2015 EKLSQEG--ETTPASDGETCHLAEETASSLSYVRSEPTASASTTAEPLPTDKLEKNISFQ 2072
Query: 1169 PAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEK 1228
++T G + T +++K++ + L EV P DG SV+
Sbjct: 2073 DEVKTLNGDKREAILLSSEEQTNVNSKIETNSEELQASRTD---EV--PH--VDGKSVDV 2125
Query: 1229 LEDTVDD----HSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL----ETPLIMKSTE 1280
TV + HS+ + PD ++ G++S D + L E + + +
Sbjct: 2126 ANQTVKEDEAKHSVEIQSSMLEPD--ELPNAGQKGHSSIDLQPLVLVTSNENAMSLDDKD 2183
Query: 1281 GPSVSMKADDVADHSRETPILSG 1303
+S K+ D+ E+ + G
Sbjct: 2184 YDPIS-KSADIEQDPEESVFVQG 2205
Score = 98 (39.6 bits), Expect = 4.8e-179, Sum P(3) = 4.8e-179
Identities = 137/679 (20%), Positives = 248/679 (36%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDI-SSEHAFGSSLVLQDKASEAEIGDRI--DEP-QVDGF 1668
D P G IVPE N+ E D+ +S H +V+ ++ E + + D P Q D
Sbjct: 2650 DIPPVGGIVPE----NLQEIVDVPASPHGVVPDVVVS-QSEEIQSPSILPDDVPGQPDDG 2704
Query: 1669 SPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKID------- 1721
+ M + + + G G + P + E L + E+ D
Sbjct: 2705 NCEKMDTMQNNTSIDIGITSGKTCQPSSSTQPEDENRNSLSHCEPSEVVEQRDSRDQVCI 2764
Query: 1722 GSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPS--SSLAPWEAKIDGS 1779
GS++ + + +LE+ I QS +V +++ + +P S+ D
Sbjct: 2765 GSVESQVEISSAILENRSADIQPP----QSILVDQKDIEESKEPGIESADVSLHQLADIQ 2820
Query: 1780 SEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK-DP 1838
+E + Q +E SKE E+ D + + + + P + + T + K G+E D
Sbjct: 2821 AEPSNLVDQMDIEESKEPGTESAD-VSLHQLADIQPGPSILVDQMDTEKSKEPGTESADV 2879
Query: 1839 DSSFAAQEDPKESVVEAGDQMGVSLG---GATVMEKSSEDLAT--PPLSLANEEEMIEGF 1893
A P S++ DQM G + S LA P S+ ++ E F
Sbjct: 2880 SLHQLADIQPGPSILV--DQMDTEKSKEPGTESADVSLHQLADIQPGPSILVDQMDTEEF 2937
Query: 1894 DNDPTGISMAVMDSKECAAEAADQMCVSEGCVVVTEKLSEDLGLNXXXXXXXXXXXXXXX 1953
N + + D + + +A Q + + E +L ++
Sbjct: 2938 KNPDVSLHQ-LADIEPSLSISAVQKNIEDKDQSHVETAGSEL-VDVSAECSTEPQVQLPP 2995
Query: 1954 XXDPVNSS-VTVEDSKG-FEAEACD---QLHVLRGGGVVAETVQEEEKTELSCEKQPIGS 2008
+PV V + SK AE D L ++ E + L+ ++ I
Sbjct: 2996 SSEPVGDMHVHLGASKSEIVAEGTDFSSSLPKTEEENAKSQLADTEPSSSLTAVQKNIED 3055
Query: 2009 SVDDE-------SKGPEVEPCVQMDVRGDGIVPETV--PEEL---GLPSSPMVVXXXXXX 2056
V+ S G EP VQ+ + +V E P L G+ +S ++
Sbjct: 3056 QVETAGCEFVVVSTGCSTEPQVQLPPSAEPVVAEGTEFPSSLLMTGVDNSSHLMTGVDNA 3115
Query: 2057 XXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEG 2116
SS P K +A+ + + G G + D+ L SS+ + + +
Sbjct: 3116 KTHLADVVPSSSPTTMEKNIEAQDQDQVTTGGCGLV------DV-LTECSSEPQLQ-LPP 3167
Query: 2117 FSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEE 2176
++PV SE +A+ +PL E + D+++++ VV + + E
Sbjct: 3168 SAEPVISEGTELAT-LPLTEEENADSQLANIEPSSSPSVVEKNIEAQDQDQVKTAGCELV 3226
Query: 2177 KNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKT 2236
CS EP V S EP+ + + + ++ EG PS V E
Sbjct: 3227 STGCSS-EP---QVHLPPSAEPDGDIHVHLKETEKSESMVVVGEGTAFPSSLPVTEEGNA 3282
Query: 2237 ENEIEE-DPVVNSVAVEES 2254
E+++ + +P + VE++
Sbjct: 3283 ESQLADTEPFTSPTVVEKN 3301
Score = 97 (39.2 bits), Expect = 3.6e-180, Sum P(4) = 3.6e-180
Identities = 106/460 (23%), Positives = 183/460 (39%)
Query: 1525 EVLCGGTG--DKKADCKMEPDCL-------VASDSVNMELVPRDFGVGRRDGDIEIFNME 1575
+V GG G D +C EP V S+ + +P + D ++ N+E
Sbjct: 3142 QVTTGGCGLVDVLTECSSEPQLQLPPSAEPVISEGTELATLPL---TEEENADSQLANIE 3198
Query: 1576 GGPSNALLSSSKDIIAE------SAKADVV---LDEHGKVQLLPGADNPEGGVIVPEHKS 1626
PS++ K+I A+ +A ++V +V L P A+ P+G + V ++
Sbjct: 3199 --PSSSPSVVEKNIEAQDQDQVKTAGCELVSTGCSSEPQVHLPPSAE-PDGDIHVHLKET 3255
Query: 1627 ENMGEKDDISSEHAFGSSL-VLQDKASEAEIGDRIDEPQVDGFSPRSMS-GVVD-ELVDE 1683
E + AF SSL V ++ +E+++ D EP SP + + D E V+
Sbjct: 3256 EKSESMVVVGEGTAFPSSLPVTEEGNAESQLADT--EPFT---SPTVVEKNIKDQEQVET 3310
Query: 1684 AG-----DHMGVSHSP-VHVVEREKSEELGLPSLSSATKEEKIDGSL---DKDPDSNLVV 1734
G D G S P V + + E L K E + + D DP +L+V
Sbjct: 3311 TGCGLVDDSTGCSSEPQVQLPPSAEPMEGTHMHLEETKKSETVVTEIQLADIDPSFSLIV 3370
Query: 1735 LEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSV-LEG 1793
++ + I DQ D ++G N+ C E +I SS +P + LE
Sbjct: 3371 VQTN---IEDQ-DQIETGGCDLINVPSGCST-------EPQIQLSSSAEPEEGMHIHLEA 3419
Query: 1794 S--KETVAEAGDQMDISIMPEKLPEHLD-----IPASLATPEEKTEGSEKDP-------- 1838
+ ETV G ++ S+ P E+ D + S++ E+T EKD
Sbjct: 3420 AMNSETVVTEGSELPSSL-PMTEDENADGQLAEVEPSVSLTVEQTNIEEKDHIETAECEL 3478
Query: 1839 -DSSFAAQEDPKESVVEAGDQMG-VSLGGATVM-EKSSEDLATPPLSLANEEEMIEGFDN 1895
D S P+ + D +G + + TV+ E + + + P + E + D
Sbjct: 3479 VDVSPGCSSQPEVKFPPSPDAVGGMDVHLETVVTEDTDSNSSLPKTEEKDAENPSDRLDG 3538
Query: 1896 DPTGISMAVMDSKECAAEAADQMCVSEGCVVVTEKLSEDL 1935
+ G ++A ++ C + V+E + K +ED+
Sbjct: 3539 ESDGTTVATVEGT-CVESNS---LVAEESNIEVPKDNEDV 3574
Score = 96 (38.9 bits), Expect = 7.9e-179, Sum P(3) = 7.9e-179
Identities = 134/624 (21%), Positives = 232/624 (37%)
Query: 1671 RSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPD- 1729
R G D +++ D + V E+EK+ + +P + T+++ + D+ P
Sbjct: 2208 RPKVGTADTQMEDTNDAKLLVGCSVESEEKEKTLQSLIPGDDADTEQDPEESVSDQRPKV 2267
Query: 1730 -SNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQ 1788
S +ED+ D+ V E Q S P + D +EK+P S
Sbjct: 2268 GSAYTQMEDT-----DEAKLLMGCSVESEEKEKTLQ---SHIPGD---DADTEKNPEESV 2316
Query: 1789 SVLEGSKETVAEAGDQM----DISIMP--EKLPEHLDIPASLATPEEKTEGSEKDPDSSF 1842
SV + V QM D ++ E + P + + +E++P+ S
Sbjct: 2317 SVQGVDRPKVGTTDTQMEDTNDAKLLVGCSVASEEKEKTLQSHIPGDDAD-TEQNPEESV 2375
Query: 1843 AAQ--EDPK----ESVVEAGDQMGVSLGGATVMEKSSEDLATP-PLSLA----NEEEMIE 1891
+ Q PK + +E D+ V +G + E+ + L + P A N EE +
Sbjct: 2376 SVQGVNRPKVGNANTQMEDTDEAKVLVGCSVESEEKEKTLQSHIPGDDADTEQNPEESVS 2435
Query: 1892 GFDNDPTGISMAVMDSKECAAEAADQMCVSEGCV--VVTEKLSEDLGLNXXXXXXXXXXX 1949
FD G + M+ + A SE + + S+D L+
Sbjct: 2436 NFDRPKDGTADTHMEDIDDAKLLVGCSVESEEKEKSLQSHMPSDDAVLHAPFENTKDSKG 2495
Query: 1950 XXXXXXDPVNS-SVTVEDSKGFEAEA---CDQLHVLRGGGVVAETVQEEEKTELSCEKQP 2005
V+ ++ V + KGFE+E D + RG V +E + + K +S + P
Sbjct: 2496 DDLHGESLVSCPTMEVMEQKGFESETHARTDSGGIDRGNEV-SENMSDGVKMNISSVQVP 2554
Query: 2006 IGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSA 2065
S + S+ P V GI PE V E + +P+SP S
Sbjct: 2555 DASHDLNVSQDQTDIPLV------GGIDPEHVQENVDVPASPHGAAPNIVIFQSEGHLSP 2608
Query: 2066 SSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGS-E 2124
S +P D A + E N +T +P S D++ + + PVG
Sbjct: 2609 SILP-------DDVAGQL---ESMSNDEKTNISSEQVPDVSHDLKVSQDQTDIPPVGGIV 2658
Query: 2125 KESIASAVPLDESK-G--PDAEVSSQTAIEGGGVVSIPVPEEAD-GPASFLAAEEEKNEC 2180
E++ V + S G PD VS I+ ++ VP + D G + +
Sbjct: 2659 PENLQEIVDVPASPHGVVPDVVVSQSEEIQSPSILPDDVPGQPDDGNCEKMDTMQNNTSI 2718
Query: 2181 -----SDKEPVGSSVSQIESKEPEAKAF-EPMDVVDGAVALENTSEGMGGPSPPL--VIA 2232
S K SS +Q E + + + EP +VV+ + + G + I
Sbjct: 2719 DIGITSGKTCQPSSSTQPEDENRNSLSHCEPSEVVEQRDSRDQVCIGSVESQVEISSAIL 2778
Query: 2233 EDKTEN-EIEEDPVVNSVAVEESK 2255
E+++ + + + +V+ +EESK
Sbjct: 2779 ENRSADIQPPQSILVDQKDIEESK 2802
Score = 94 (38.1 bits), Expect = 2.0e-180, Sum P(5) = 2.0e-180
Identities = 115/499 (23%), Positives = 189/499 (37%)
Query: 1548 SDSVNMEL----VP---RDFGVGRRDGDIEIFNMEGGPSNALLSSSKDIIAE--SAKADV 1598
SD V M + VP D V + DI + GG + + D+ A A ++
Sbjct: 2541 SDGVKMNISSVQVPDASHDLNVSQDQTDIPLV---GGIDPEHVQENVDVPASPHGAAPNI 2597
Query: 1599 VL---DEHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAE 1655
V+ + H +LP D+ G + +S + EK +ISSE S L K S+
Sbjct: 2598 VIFQSEGHLSPSILP--DDVAGQL-----ESMSNDEKTNISSEQVPDVSHDL--KVSQ-- 2646
Query: 1656 IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPS-LSSA 1714
D+ D P V G P ++ +VD A H GV P VV + SEE+ PS L
Sbjct: 2647 --DQTDIPPVGGIVPENLQEIVDV---PASPH-GVV--PDVVVSQ--SEEIQSPSILPDD 2696
Query: 1715 TKEEKIDGSLDK-DPDSNLVVLEDSKGSIGDQMDCCQSGVVVPE----NLSDFCQPSSSL 1769
+ DG+ +K D N ++ I C S PE N C+PS +
Sbjct: 2697 VPGQPDDGNCEKMDTMQNNTSIDIG---ITSGKTCQPSSSTQPEDENRNSLSHCEPSEVV 2753
Query: 1770 APWEAKID---GSSEKDPVSSQSVLEGSKETVAEAG----DQMDISIMPEKLPEHLDIPA 1822
+++ GS E S ++LE + DQ DI E E D+
Sbjct: 2754 EQRDSRDQVCIGSVESQVEISSAILENRSADIQPPQSILVDQKDIEESKEPGIESADVSL 2813
Query: 1823 -SLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPL 1881
LA + + D + + + + V + G + ++++ + + P
Sbjct: 2814 HQLADIQAEPSNLVDQMDIEESKEPGTESADVSLHQLADIQPGPSILVDQMDTEKSKEPG 2873
Query: 1882 SLANEEEMIEGFDNDPTGISMAV--MD---SKECAAEAAD----QMC-VSEGCVVVTEKL 1931
+ + + + + D P G S+ V MD SKE E+AD Q+ + G ++ +++
Sbjct: 2874 TESADVSLHQLADIQP-GPSILVDQMDTEKSKEPGTESADVSLHQLADIQPGPSILVDQM 2932
Query: 1932 SEDLGLNXXXXXXXXXXXXXXXXXDPVNSSVTVEDSKGFEAEACDQLHVLRGGGVVAETV 1991
+ N V ++ ED DQ HV G + +
Sbjct: 2933 DTEEFKNPDVSLHQLADIEPSLSISAVQKNI--EDK--------DQSHVETAGSELVDVS 2982
Query: 1992 QE---EEKTELSCEKQPIG 2007
E E + +L +P+G
Sbjct: 2983 AECSTEPQVQLPPSSEPVG 3001
Score = 91 (37.1 bits), Expect = 5.4e-08, Sum P(5) = 5.4e-08
Identities = 42/167 (25%), Positives = 68/167 (40%)
Query: 558 PGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAV 617
PGP+ + + P S S GG VSS+ S + Q T PS A
Sbjct: 1669 PGPNKQPLDLPVSTSSTLLGGGPVQNQNAVSSVCDGSKSPSEGRTYTALQGVTTAPSDAT 1728
Query: 618 AALNSE-------LNTN-LATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQ 669
++S+ +++ + + + K + R S G TP+R+GKR+
Sbjct: 1729 LPMSSQPSDATLPMSSQPVGSTVEAQEANVPSLPAALPAKRRVRNLPSRGETPKRQGKRR 1788
Query: 670 ALGSP-PISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQE 715
G P P +D S+ + Q E G L +K+ K DA+++E
Sbjct: 1789 --GQPLPATDASSARSTGLTPQIEVKVGNLSGTKA----KFDAVAKE 1829
Score = 90 (36.7 bits), Expect = 9.6e-180, Sum P(4) = 9.6e-180
Identities = 91/381 (23%), Positives = 154/381 (40%)
Query: 1536 ADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDI-EIFNMEGGPSNAL--LSSSKDIIAE 1592
AD + EP LV D +++E ++ G D + ++ +++ GPS + + + K
Sbjct: 2817 ADIQAEPSNLV--DQMDIE-ESKEPGTESADVSLHQLADIQPGPSILVDQMDTEKSKEPG 2873
Query: 1593 SAKADVVLDEHGKVQLLPGADNPEGGVIVPE---HKSENMG-EKDDISSEHAF----GSS 1644
+ ADV L + +Q PG P ++V + KS+ G E D+S G S
Sbjct: 2874 TESADVSLHQLADIQ--PG---PS--ILVDQMDTEKSKEPGTESADVSLHQLADIQPGPS 2926
Query: 1645 LVLQDKASEAEIGDRIDEPQVDGFSPR-SMSGVVDELVDEAGDHMGVSHSPVHVVEREKS 1703
+++ +E + Q+ P S+S V + D+ H+ + S + V E S
Sbjct: 2927 ILVDQMDTEEFKNPDVSLHQLADIEPSLSISAVQKNIEDKDQSHVETAGSELVDVSAECS 2986
Query: 1704 EE--LGLPSLSS----------ATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQS 1751
E + LP S A+K E + D E++K + D + S
Sbjct: 2987 TEPQVQLPPSSEPVGDMHVHLGASKSEIVAEGTDFSSSLPKTEEENAKSQLADT-EPSSS 3045
Query: 1752 GVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMP 1811
V +N+ D Q ++ + G S + V L S E V G + S+
Sbjct: 3046 LTAVQKNIED--QVETAGCEFVVVSTGCSTEPQVQ----LPPSAEPVVAEGTEFPSSL-- 3097
Query: 1812 EKLPEHLDIPASLATPEE--KTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVM 1869
L +D + L T + KT ++ P SS E K +EA DQ V+ GG ++
Sbjct: 3098 --LMTGVDNSSHLMTGVDNAKTHLADVVPSSSPTTME--KN--IEAQDQDQVTTGGCGLV 3151
Query: 1870 EKSSEDLATPPLSLANEEEMI 1890
+ +E + P L L E +
Sbjct: 3152 DVLTECSSEPQLQLPPSAEPV 3172
Score = 84 (34.6 bits), Expect = 2.0e-180, Sum P(5) = 2.0e-180
Identities = 35/153 (22%), Positives = 59/153 (38%)
Query: 890 SVPVKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAV--------FDAKLNQHSQNKSRD 941
++P KR R P+ GE P+R+GK++G D S+ + K+ S K++
Sbjct: 1764 ALPAKRRVRNLPSRGETPKRQGKRRGQPLPATDASSARSTGLTPQIEVKVGNLSGTKAKF 1823
Query: 942 SFGSKTISLRSKQETADVNDVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXX 1001
+K S+ D++ + +EI +T TG S+ + D
Sbjct: 1824 DAVAKEQPHFSQSVAPDIHSSGSLSQEIRRDTSG----TGGSARKQTADVTDVARVMKEI 1879
Query: 1002 XXEVAKKQSSDDKTCSVTPTVETPPPGFNSPNE 1034
E + + K + T T P SP E
Sbjct: 1880 FSETSLLKH---KVGEPSATTRTNVPDAQSPGE 1909
Score = 84 (34.6 bits), Expect = 1.4e-177, Sum P(3) = 1.4e-177
Identities = 92/447 (20%), Positives = 169/447 (37%)
Query: 1779 SSEKDPVSSQSVLEGSKETVAEAGDQMDI----SIMPEKLPEHLDIPASL--ATPEEKTE 1832
+ EK +SS+ V + S + + + DQ DI I+PE L E +D+PAS P+
Sbjct: 2624 NDEKTNISSEQVPDVSHD-LKVSQDQTDIPPVGGIVPENLQEIVDVPASPHGVVPDVVVS 2682
Query: 1833 GSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATV-MEKSSEDLATPPLSLANEEEMIE 1891
SE+ S + P + ++M ++ + +S P S E+E
Sbjct: 2683 QSEEIQSPSILPDDVPGQPDDGNCEKMDTMQNNTSIDIGITSGKTCQPSSSTQPEDENRN 2742
Query: 1892 GFDN-DPTGISMAVMDSKE--CAAEAADQMCVSEGCVVVTEKLSEDLGLNXXXXXXXXXX 1948
+ +P+ + + DS++ C Q+ +S + E S D+
Sbjct: 2743 SLSHCEPSEV-VEQRDSRDQVCIGSVESQVEISSA---ILENRSADI---QPPQSILVDQ 2795
Query: 1949 XXXXXXXDP-VNSS-VTVEDSKGFEAEAC---DQLHV--LRGGGVVAETVQEEEKTELSC 2001
+P + S+ V++ +AE DQ+ + + G + V + ++
Sbjct: 2796 KDIEESKEPGIESADVSLHQLADIQAEPSNLVDQMDIEESKEPGTESADVSLHQLADIQP 2855
Query: 2002 EKQPIGSSVDDE-SKGPEVEPC-VQM----DVR-GDGIVPETVPEELGL-PSSPMVVXXX 2053
+ +D E SK P E V + D++ G I+ + + E P +
Sbjct: 2856 GPSILVDQMDTEKSKEPGTESADVSLHQLADIQPGPSILVDQMDTEKSKEPGTESADVSL 2915
Query: 2054 XXXXXXXXXPS--ASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEE 2111
PS + E K PD + + D E P L + ++E+
Sbjct: 2916 HQLADIQPGPSILVDQMDTEEFKNPDVSLHQLADIE---------PS-LSISAVQKNIED 2965
Query: 2112 EKIEGFSKPVGSEKESIASAVPLDESKG--PDAEVSSQTAIEGGGVVSIPVPEEADGPAS 2169
K + + GSE +++ + P +E + G S V E D +S
Sbjct: 2966 -KDQSHVETAGSELVDVSAECSTEPQVQLPPSSEPVGDMHVHLGASKSEIVAEGTDFSSS 3024
Query: 2170 FLAAEEE--KNECSDKEPVGSSVSQIE 2194
EEE K++ +D EP SS++ ++
Sbjct: 3025 LPKTEEENAKSQLADTEP-SSSLTAVQ 3050
Score = 83 (34.3 bits), Expect = 1.8e-177, Sum P(3) = 1.8e-177
Identities = 68/283 (24%), Positives = 115/283 (40%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRG-DGIVPETVPEELGLPSSP 2047
E++ +EKT +S E+ P D S +V Q D+ GIVPE + E + +P+SP
Sbjct: 2620 ESMSNDEKTNISSEQVP------DVSHDLKVSQD-QTDIPPVGGIVPENLQEIVDVPASP 2672
Query: 2048 MVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGL----- 2102
V S S +P PD + N E M+ D+G+
Sbjct: 2673 HGVVPDVVVSQSEEIQSPSILPDDVPGQPD-DGN----CEKMDTMQNNTSIDIGITSGKT 2727
Query: 2103 --PLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPV 2160
P SS+ E+E S SE V +S+ S ++ +E +
Sbjct: 2728 CQPSSSTQPEDENRNSLSHCEPSE------VVEQRDSRDQVCIGSVESQVEISSAILENR 2781
Query: 2161 PEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE 2220
+ P S L +++ E KEP G + + + EP ++VD + +E + E
Sbjct: 2782 SADIQPPQSILVDQKDIEE--SKEP-GIESADVSLHQLADIQAEPSNLVD-QMDIEESKE 2837
Query: 2221 GMGGPSPPLVIAEDKTENEIEEDP--VVNSVAVEESK--GSEA 2259
G S + + + +I+ P +V+ + E+SK G+E+
Sbjct: 2838 P-GTESADVSLHQLA---DIQPGPSILVDQMDTEKSKEPGTES 2876
Score = 78 (32.5 bits), Expect = 9.5e-07, Sum P(5) = 9.5e-07
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 496 SSQPTTAFVPVA--P-GS----QSASACPSTP--MQPKGRGRRIQSGEQVPRRRGKKIGL 546
SSQP+ A +P++ P GS Q A+ PS P + K R R + S + P+R+GK+ G
Sbjct: 1732 SSQPSDATLPMSSQPVGSTVEAQEANV-PSLPAALPAKRRVRNLPSRGETPKRQGKRRGQ 1790
Query: 547 VLPAA-SDDIPSPGPDPK 563
LPA + S G P+
Sbjct: 1791 PLPATDASSARSTGLTPQ 1808
Score = 73 (30.8 bits), Expect = 2.8e-174, Sum P(4) = 2.8e-174
Identities = 80/364 (21%), Positives = 146/364 (40%)
Query: 1055 VSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPM-VPNLETAPPGFDIPIEKHN- 1112
VS H LA ++P +++ + P +S + + L PG I +++ +
Sbjct: 2879 VSLHQLAD----IQPGPSILVDQMDTEKSKEPGTESADVSLHQLADIQPGPSILVDQMDT 2934
Query: 1113 EQSRNQNNP--EVKGEETPVS-SEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTP 1169
E+ +N + ++ E +S S + E +Q V S L D+S++ CS P
Sbjct: 2935 EEFKNPDVSLHQLADIEPSLSISAVQKNIEDKDQSHVETAGS--ELVDVSAE---CSTEP 2989
Query: 1170 AMETAPGF----DIPIEKGVEQSGTEIDAKVKWKNTPLPG-EAIVAGIEVFKPENKTDGD 1224
++ P D+ + G +S EI A+ ++ LP E A ++ E +
Sbjct: 2990 QVQLPPSSEPVGDMHVHLGASKS--EIVAEGTDFSSSLPKTEEENAKSQLADTEPSSSLT 3047
Query: 1225 SVEK-LEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSE---DSSKMPLETPLIMKSTE 1280
+V+K +ED V+ E + S S +P + + ++ P + L+M +
Sbjct: 3048 AVQKNIEDQVETAGC--EFVVVSTGCSTEPQVQLPPSAEPVVAEGTEFP--SSLLMTGVD 3103
Query: 1281 GPSVSMKA-DDVADHSRET-PILSGSPINSGTE-----------CSTVSVKTDVGNHPQN 1327
S M D+ H + P S + + E C V V T+ + PQ
Sbjct: 3104 NSSHLMTGVDNAKTHLADVVPSSSPTTMEKNIEAQDQDQVTTGGCGLVDVLTECSSEPQL 3163
Query: 1328 VEPTSASPERS-GPQNSAVGFCDKSEIPSMEAEVAKCPSDAIVNNLLETP-LD-IKSIGG 1384
P SA P S G + + + ++ S A + S ++V +E D +K+ G
Sbjct: 3164 QLPPSAEPVISEGTELATLPLTEEENADSQLANIEPSSSPSVVEKNIEAQDQDQVKTAGC 3223
Query: 1385 PIVS 1388
+VS
Sbjct: 3224 ELVS 3227
Score = 72 (30.4 bits), Expect = 1.5e-177, Sum P(4) = 1.5e-177
Identities = 122/534 (22%), Positives = 193/534 (36%)
Query: 1662 EPQVDGFSPRSMSGVVDELVDEAGDHM--GVSHSPVHV---VEREKSEELGL-PSLSSAT 1715
EPQV P S VV E + + GV +S H+ V+ K+ + PS S T
Sbjct: 3074 EPQVQ--LPPSAEPVVAEGTEFPSSLLMTGVDNSS-HLMTGVDNAKTHLADVVPSSSPTT 3130
Query: 1716 KEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCC-QSGVVVPENLSDFCQPSSSLA--PW 1772
E+ I+ D+D V G + +C + + +P + + LA P
Sbjct: 3131 MEKNIEAQ-DQDQ-----VTTGGCGLVDVLTECSSEPQLQLPPSAEPVISEGTELATLPL 3184
Query: 1773 EAKIDGSSEK---DPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEE 1829
+ + S+ +P SS SV+E + EA DQ + +L + S
Sbjct: 3185 TEEENADSQLANIEPSSSPSVVEKN----IEAQDQDQVKTAGCEL---VSTGCSSEPQVH 3237
Query: 1830 KTEGSEKDPDSSFAAQEDPK-ESVVEAGDQMGVSLGGATVMEKSSED-LA-TPPLSLANE 1886
+E D D +E K ES+V G+ E ++E LA T P +
Sbjct: 3238 LPPSAEPDGDIHVHLKETEKSESMVVVGEGTAFPSSLPVTEEGNAESQLADTEPFTSPTV 3297
Query: 1887 -EEMIEGFDN-DPTGISMAVMDSKECAAEAADQMCVSEGCVVVTEKLSEDLGLNXXXXXX 1944
E+ I+ + + TG + V DS C++E Q+ S + T + L
Sbjct: 3298 VEKNIKDQEQVETTGCGL-VDDSTGCSSEPQVQLPPSAEPMEGTH-----MHLEETKKSE 3351
Query: 1945 XXXXXXXXXXXDPVNSSVTV----EDSKGFEAEACDQLHVLRGGGV-----VAETVQEEE 1995
DP S + V ED E CD ++V G ++ + + EE
Sbjct: 3352 TVVTEIQLADIDPSFSLIVVQTNIEDQDQIETGGCDLINVPSGCSTEPQIQLSSSAEPEE 3411
Query: 1996 KTELSCEKQPIGSSVDDE-SKGPEVEPCVQMDVRGDGIVPETVPEELGLPSSPMVVXXXX 2054
+ E +V E S+ P P + D DG + E P + L +
Sbjct: 3412 GMHIHLEAAMNSETVVTEGSELPSSLPMTE-DENADGQLAEVEPS-VSLTVEQTNIEEKD 3469
Query: 2055 XXXXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKI 2114
+ G S P+ + DA GG D+ L + V E+
Sbjct: 3470 HIETAEC--ELVDVSPGCSSQPEVKFPPSPDAVGG--------MDVHL---ETVVTEDTD 3516
Query: 2115 EGFSKPVGSEKESIASAVPLD-ESKGPDAEVSSQTAIEGGGVVS----IPVPEE 2163
S P EK++ + LD ES G T +E +V+ I VP++
Sbjct: 3517 SNSSLPKTEEKDAENPSDRLDGESDGTTVATVEGTCVESNSLVAEESNIEVPKD 3570
Score = 64 (27.6 bits), Expect = 1.6e-178, Sum P(5) = 1.6e-178
Identities = 69/291 (23%), Positives = 116/291 (39%)
Query: 1622 PEHKSENMGEKD-DISSEHAFGSSLVLQDKASEAEIG-DRIDEPQV-DGFSPRSMSGVVD 1678
P +N+ +D D + G VL + +SE ++ EP + +G ++ +
Sbjct: 3128 PTTMEKNIEAQDQDQVTTGGCGLVDVLTECSSEPQLQLPPSAEPVISEGTELATLPLTEE 3187
Query: 1679 ELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDS 1738
E D ++ S SP VVE+ E + +A E + +P +L +
Sbjct: 3188 ENADSQLANIEPSSSP-SVVEKN-IEAQDQDQVKTAGCE-LVSTGCSSEPQVHLPPSAEP 3244
Query: 1739 KGSIG---DQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGS-SEKDPVSSQSVLEGS 1794
G I + + +S VVV E + F PSS E + ++ +P +S +V+E +
Sbjct: 3245 DGDIHVHLKETEKSESMVVVGEGTA-F--PSSLPVTEEGNAESQLADTEPFTSPTVVEKN 3301
Query: 1795 ---KETVAEAG-----DQMDISIMPE-KLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQ 1845
+E V G D S P+ +LP + E+T+ SE A
Sbjct: 3302 IKDQEQVETTGCGLVDDSTGCSSEPQVQLPPSAEPMEGTHMHLEETKKSETVVTEIQLAD 3361
Query: 1846 EDPKES--VVEAG--DQMGVSLGGATVMEKSSEDLATPPLSLANEEEMIEG 1892
DP S VV+ DQ + GG ++ S P + L++ E EG
Sbjct: 3362 IDPSFSLIVVQTNIEDQDQIETGGCDLINVPSGCSTEPQIQLSSSAEPEEG 3412
Score = 64 (27.6 bits), Expect = 9.2e-172, Sum P(3) = 9.2e-172
Identities = 61/252 (24%), Positives = 97/252 (38%)
Query: 1012 DDKT-CSVTPTVETPPPGFNSPNENPG-ELTGTKNDASV-----RGDHTPVSGHTLASKT 1064
DD T CS P V+ PP P E L TK +V D P S + +T
Sbjct: 3317 DDSTGCSSEPQVQLPPSA--EPMEGTHMHLEETKKSETVVTEIQLADIDP-SFSLIVVQT 3373
Query: 1065 EALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVK 1124
++ +++ + G + I N + P + +A P + I H E + N +
Sbjct: 3374 N-IEDQDQIETGGCDLI-NVPSGCSTEPQIQLSSSAEPEEGMHI--HLEAAMNSETVVTE 3429
Query: 1125 GEETPVS----SEAPASTEAFEQE-KVTNTSSFVNLADLSS-DDKTCS---VTPAMETAP 1175
G E P S + A + E E V+ T N+ + + C V+P + P
Sbjct: 3430 GSELPSSLPMTEDENADGQLAEVEPSVSLTVEQTNIEEKDHIETAECELVDVSPGCSSQP 3489
Query: 1176 GFDIPIEK-GVEQSGTEIDAKVKW---KNTPLPG-EAIVAGIEVFKPENKTDGDSVEKLE 1230
P V ++ V N+ LP E A + + ++DG +V +E
Sbjct: 3490 EVKFPPSPDAVGGMDVHLETVVTEDTDSNSSLPKTEEKDAENPSDRLDGESDGTTVATVE 3549
Query: 1231 DT-VDDHSLVKE 1241
T V+ +SLV E
Sbjct: 3550 GTCVESNSLVAE 3561
Score = 62 (26.9 bits), Expect = 2.0e-180, Sum P(5) = 2.0e-180
Identities = 85/385 (22%), Positives = 157/385 (40%)
Query: 1010 SSDDKTCSVTPTVETPPPGFN-SPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALK 1068
SS+++T +V +ET S + + G D + + + H++ ++ L+
Sbjct: 2089 SSEEQT-NVNSKIETNSEELQASRTDEVPHVDGKSVDVANQTVKEDEAKHSVEIQSSMLE 2147
Query: 1069 PENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEET 1128
P+ AG+ +SS D + L +V + E A D + ++ + + +PE E
Sbjct: 2148 PDELPNAGQK---GHSSIDLQPLVLVTSNENAMSLDDKDYDPISKSADIEQDPE---ESV 2201
Query: 1129 PVSSEA-PASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQ 1187
V P A Q + TN + + + S++K ++ + PG D E+ E+
Sbjct: 2202 FVQGVGRPKVGTADTQMEDTNDAKLLVGCSVESEEKEKTLQSLI---PGDDADTEQDPEE 2258
Query: 1188 SGTEIDAKVKWKNTPLPG--EA-IVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKEL-I 1243
S ++ KV T + EA ++ G V +S EK E T+ H +
Sbjct: 2259 SVSDQRPKVGSAYTQMEDTDEAKLLMGCSV---------ESEEK-EKTLQSHIPGDDADT 2308
Query: 1244 HRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSG 1303
++P+ S V G D K+ T M+ T + + VA +E + S
Sbjct: 2309 EKNPEESVSVQG-------VDRPKVGT-TDTQMEDTNDAKLLVGCS-VASEEKEKTLQSH 2359
Query: 1304 SP-INSGTECS---TVSV----KTDVGNHPQNVEPTSASPERSG--PQNSAVGFCDKSEI 1353
P ++ TE + +VSV + VGN +E T + G ++ +S I
Sbjct: 2360 IPGDDADTEQNPEESVSVQGVNRPKVGNANTQMEDTDEAKVLVGCSVESEEKEKTLQSHI 2419
Query: 1354 PSMEAEVAKCPSDAIVNNLLETPLD 1378
P +A+ + P +++ N + P D
Sbjct: 2420 PGDDADTEQNPEESVSN--FDRPKD 2442
Score = 58 (25.5 bits), Expect = 7.3e-05, Sum P(5) = 7.3e-05
Identities = 35/128 (27%), Positives = 56/128 (43%)
Query: 676 ISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAG 735
+S V G +S S ++ G+ + S + + + + + QP G A A
Sbjct: 1698 VSSVCDGSKSPSEGRTYTALQGVTTAPSDATLPMSSQPSDATLPMSSQPVGSTVEAQEAN 1757
Query: 736 ----PDQKPAEQSVRVVQSN------------QPINLPATHDSSSQPSGSTPAQVPSMDL 779
P PA++ VR + S QP LPAT SS++ +G TP Q+ + +
Sbjct: 1758 VPSLPAALPAKRRVRNLPSRGETPKRQGKRRGQP--LPATDASSARSTGLTP-QI-EVKV 1813
Query: 780 GNVASDTK 787
GN+ S TK
Sbjct: 1814 GNL-SGTK 1820
Score = 57 (25.1 bits), Expect = 5.0e-171, Sum P(3) = 5.0e-171
Identities = 100/467 (21%), Positives = 165/467 (35%)
Query: 1122 EVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPI 1181
+V +P + E + EA +Q++VT L D+ ++ CS P ++ P + I
Sbjct: 3121 DVVPSSSPTTMEK--NIEAQDQDQVTTGGC--GLVDVLTE---CSSEPQLQLPPSAEPVI 3173
Query: 1182 EKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLE-DTVDDHSLVK 1240
+G E + + + + E + V K D D V+ + V +
Sbjct: 3174 SEGTELATLPLTEEENADSQLANIEPSSSPSVVEKNIEAQDQDQVKTAGCELVSTGCSSE 3233
Query: 1241 ELIHRSPD-HSDMVIGNVPGNTSEDSSKMPL-----ETPLIMKSTE-GPSVSMKADDVAD 1293
+H P D I +V +E S M + P + TE G + S AD
Sbjct: 3234 PQVHLPPSAEPDGDI-HVHLKETEKSESMVVVGEGTAFPSSLPVTEEGNAESQLADTEPF 3292
Query: 1294 HSR---ETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDK 1350
S E I + + T C V T + PQ P SA P + + K
Sbjct: 3293 TSPTVVEKNIKDQEQVET-TGCGLVDDSTGCSSEPQVQLPPSAEPMEGTHMH--LEETKK 3349
Query: 1351 SEIPSMEAEVAKC-PSDA--IVNNLLETPLDIKSIGGPIVSMKAADVADADHPLETAVE- 1406
SE E ++A PS + +V +E I++ G ++++ + + L ++ E
Sbjct: 3350 SETVVTEIQLADIDPSFSLIVVQTNIEDQDQIETGGCDLINVPSGCSTEPQIQLSSSAEP 3409
Query: 1407 -------LGSPVNSCTVEPXXXXXXXXXXXXXXXXLDNPLS-IE-GIGLSVSAKTDDVAD 1457
L + +NS TV D L+ +E + L+V + D
Sbjct: 3410 EEGMHIHLEAAMNSETVVTEGSELPSSLPMTEDENADGQLAEVEPSVSLTVEQTNIEEKD 3469
Query: 1458 HPVEPPGCDKSDXXXXXXXXXXXXXXXXXXXQVLTKALDVGIALDKTEIATSCDTASLDD 1517
H +E C+ D +DV + TE S + +
Sbjct: 3470 H-IETAECELVDVSPGCSSQPEVKFPPSPDA---VGGMDVHLETVVTEDTDSNSSLPKTE 3525
Query: 1518 SHDNGNVEVLCGGTGDKKADCKMEPDC-----LVASDSVNMELVPRD 1559
D N G D +E C LVA +S N+E VP+D
Sbjct: 3526 EKDAENPSDRLDGESDGTTVATVEGTCVESNSLVAEES-NIE-VPKD 3570
Score = 56 (24.8 bits), Expect = 1.8e-177, Sum P(5) = 1.8e-177
Identities = 43/161 (26%), Positives = 62/161 (38%)
Query: 711 ALSQELSNKIQVQP---CGVATSADVAGPDQKPAEQSVRV-VQSNQPINLPATHDSSSQP 766
A S L+ +I+V+ G D +Q QSV + S+ ++ D+S
Sbjct: 1800 ARSTGLTPQIEVKVGNLSGTKAKFDAVAKEQPHFSQSVAPDIHSSGSLSQEIRRDTSGT- 1858
Query: 767 SGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNI---QSFEEK 823
GS Q + D+ +VA KE+ SE S K V A R N+ QS E
Sbjct: 1859 GGSARKQ--TADVTDVARVMKEIFSETSLLKHKV------GEPSATTRTNVPDAQSPGEM 1910
Query: 824 ACTNASKSKAT-LPALDSITEPYTGSTNTEGISNTIHHVPG 863
KA L + Y S + +S+ H VPG
Sbjct: 1911 NLHTVETHKAEDSSGLKNQEALYNLSKADKLVSDIPHPVPG 1951
Score = 56 (24.8 bits), Expect = 1.3e-174, Sum P(3) = 1.3e-174
Identities = 104/452 (23%), Positives = 169/452 (37%)
Query: 1818 LDI-PASLATPEEKT---EGSEKDPDSSFA-AQEDPKESVVEAGDQMG-VSLGGA-TVME 1870
+D+ P L T E + + DP S A ++DP+ESV G +G +G A T ME
Sbjct: 2162 IDLQPLVLVTSNENAMSLDDKDYDPISKSADIEQDPEESVFVQG--VGRPKVGTADTQME 2219
Query: 1871 KSSEDLATPPLSLANEEE------MIEGFDNDPT-GISMAVMDSKECAAEAADQMCVSE- 1922
+++ S+ +EE+ +I G D D +V D + A QM ++
Sbjct: 2220 DTNDAKLLVGCSVESEEKEKTLQSLIPGDDADTEQDPEESVSDQRPKVGSAYTQMEDTDE 2279
Query: 1923 -----GCVVVTEKLSEDLGLNXXXXXXXXXXX-XXXXXXDPVNS-SVTVEDSKGFEAEAC 1975
GC V +E+ + L + V+ V D+ + E
Sbjct: 2280 AKLLMGCSVESEEKEKTLQSHIPGDDADTEKNPEESVSVQGVDRPKVGTTDT---QMEDT 2336
Query: 1976 DQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPE 2035
+ +L G V +E E+EKT S P G D E + PE VQ R
Sbjct: 2337 NDAKLLVGCSVASE---EKEKTLQS--HIP-GDDADTE-QNPEESVSVQGVNRPKVGNAN 2389
Query: 2036 TVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGNMRQT 2095
T E+ V+ S IP ++ D E N E N +
Sbjct: 2390 TQMEDT---DEAKVLVGCSVESEEKEKTLQSHIPGDDA---DTEQN---PEESVSNFDR- 2439
Query: 2096 VPQDLGLPLSSSDVEEEKI-EGFSKPVGSEKESIASAVPLDES--KGP--DAEVSSQTAI 2150
P+D D+++ K+ G S +++S+ S +P D++ P + + S +
Sbjct: 2440 -PKDGTADTHMEDIDDAKLLVGCSVESEEKEKSLQSHMPSDDAVLHAPFENTKDSKGDDL 2498
Query: 2151 EGGGVVSIPVPE--EADGPASFLAAEEEK------NECSDK--EPVGSSVSQIESKEPEA 2200
G +VS P E E G S A + NE S+ + V ++S ++ +
Sbjct: 2499 HGESLVSCPTMEVMEQKGFESETHARTDSGGIDRGNEVSENMSDGVKMNISSVQVPDASH 2558
Query: 2201 KAFEPMDVVD----GAVALENTSEGMGGPSPP 2228
D D G + E+ E + P+ P
Sbjct: 2559 DLNVSQDQTDIPLVGGIDPEHVQENVDVPASP 2590
Score = 54 (24.1 bits), Expect = 6.6e-173, Sum P(4) = 6.6e-173
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 732 DVAG-PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGST 770
DV G PD E+ + +Q+N I++ T + QPS ST
Sbjct: 2696 DVPGQPDDGNCEK-MDTMQNNTSIDIGITSGKTCQPSSST 2734
Score = 54 (24.1 bits), Expect = 1.0e-170, Sum P(3) = 1.0e-170
Identities = 18/84 (21%), Positives = 37/84 (44%)
Query: 2180 CSDKEPVGSSVSQIESKEPEAKAF---EPM--DVVDGAVALENTSEGMGGPSPPLVIAED 2234
C E SS+S + S EP A A EP+ D ++ ++ ++ + + G ++
Sbjct: 2032 CHLAEETASSLSYVRS-EPTASASTTAEPLPTDKLEKNISFQDEVKTLNGDKREAILLSS 2090
Query: 2235 KTENEIEEDPVVNSVAVEESKGSE 2258
+ + + NS ++ S+ E
Sbjct: 2091 EEQTNVNSKIETNSEELQASRTDE 2114
Score = 49 (22.3 bits), Expect = 1.1e-175, Sum P(5) = 1.1e-175
Identities = 71/346 (20%), Positives = 121/346 (34%)
Query: 912 KKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKEIFS 971
K++ +P AV A +K D G +S T +V + K S
Sbjct: 2468 KEKSLQSHMPSDDAVLHAPFENTKDSKGDDLHGESLVSC----PTMEVME----QKGFES 2519
Query: 972 ETCSSKAKTGDSSLNEGKDXXXXXXXXXXXX-XEVAKKQSSDDKTCSVTPTVETPPPGFN 1030
ET A+T ++ G + V +S D S T + P G
Sbjct: 2520 ET---HARTDSGGIDRGNEVSENMSDGVKMNISSVQVPDASHDLNVSQDQT-DIPLVGGI 2575
Query: 1031 SPN---ENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPD 1087
P EN ++ + + A+ GH S + P++ A G++E+++N
Sbjct: 2576 DPEHVQENV-DVPASPHGAAPNIVIFQSEGHLSPS----ILPDDVA--GQLESMSNDEKT 2628
Query: 1088 DKSLPMVPN----LETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQ 1143
+ S VP+ L+ + DIP Q +V V + S +
Sbjct: 2629 NISSEQVPDVSHDLKVSQDQTDIPPVGGIVPENLQEIVDVPASPHGVVPDVVVS----QS 2684
Query: 1144 EKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVE-QSGTEIDAKVKWKNTP 1202
E++ + S + DD C M+ DI I G Q + + + +N+
Sbjct: 2685 EEIQSPSILPDDVPGQPDDGNCEKMDTMQNNTSIDIGITSGKTCQPSSSTQPEDENRNSL 2744
Query: 1203 LPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKELIHRSPD 1248
E EV + + D + +E V+ S + E +RS D
Sbjct: 2745 SHCEPS----EVVEQRDSRDQVCIGSVESQVEISSAILE--NRSAD 2784
Score = 48 (22.0 bits), Expect = 1.2e-171, Sum P(4) = 1.2e-171
Identities = 50/216 (23%), Positives = 82/216 (37%)
Query: 1547 ASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDE--HG 1604
AS S E +P D E+ + G A+L SS++ ++K + +E
Sbjct: 2051 ASASTTAEPLPTDKLEKNISFQDEVKTLNGDKREAILLSSEEQTNVNSKIETNSEELQAS 2110
Query: 1605 KVQLLPGADNPEGGVI---VPE----HKSE---NMGEKDDISSEHAFG-SSLVLQDKA-- 1651
+ +P D V V E H E +M E D++ + G SS+ LQ
Sbjct: 2111 RTDEVPHVDGKSVDVANQTVKEDEAKHSVEIQSSMLEPDELPNAGQKGHSSIDLQPLVLV 2170
Query: 1652 SEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVER--EKSEELGLP 1709
+ E +D+ D P S S +++ +E+ GV V + E + + L
Sbjct: 2171 TSNENAMSLDDKDYD---PISKSADIEQDPEESVFVQGVGRPKVGTADTQMEDTNDAKLL 2227
Query: 1710 SLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQ 1745
S EEK P + +D + S+ DQ
Sbjct: 2228 VGCSVESEEKEKTLQSLIPGDDADTEQDPEESVSDQ 2263
Score = 47 (21.6 bits), Expect = 5.7e-170, Sum P(3) = 5.7e-170
Identities = 92/446 (20%), Positives = 154/446 (34%)
Query: 1016 CSVTPTVETPP---P----GFNSPN-------ENPGEL-TGTKNDASVRGDHTPVSGHTL 1060
CS P V+ PP P G P+ +N L TG N + D P S T
Sbjct: 3071 CSTEPQVQLPPSAEPVVAEGTEFPSSLLMTGVDNSSHLMTGVDNAKTHLADVVPSSSPTT 3130
Query: 1061 ASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNN 1120
K + +++ G + + + S P + PP + I + E +
Sbjct: 3131 MEKNIEAQDQDQVTTGGC-GLVDVLTECSSEPQLQ----LPPSAEPVISEGTELATLPLT 3185
Query: 1121 PEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIP 1180
E + + E +S E+ V A CS P + P
Sbjct: 3186 EEENADSQLANIEPSSSPSVVEKNIEAQDQDQVKTAGCELVSTGCSSEPQVHLPPS---- 3241
Query: 1181 IEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPEN---KTDGDSVEKLEDT--VDD 1235
E G D V K T +V G P + +G++ +L DT
Sbjct: 3242 ----AEPDG---DIHVHLKETEKSESMVVVGEGTAFPSSLPVTEEGNAESQLADTEPFTS 3294
Query: 1236 HSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHS 1295
++V++ I G V +T SS+ ++ P + EG + ++ +
Sbjct: 3295 PTVVEKNIKDQEQVETTGCGLVDDSTG-CSSEPQVQLPPSAEPMEGTHMHLEETKKS--- 3350
Query: 1296 RETPILSGSPINSGTECSTVSVKTDVGNHPQ---------NVEPTSASPERSGPQNSAVG 1346
ET + + S + V+T++ + Q NV P+ S E PQ
Sbjct: 3351 -ETVVTEIQLADIDPSFSLIVVQTNIEDQDQIETGGCDLINV-PSGCSTE---PQIQLSS 3405
Query: 1347 FCDKSEIPSMEAEVAKCPSDAIVNNLLETPLDI-----KSIGG------PIVSM--KAAD 1393
+ E + E A S+ +V E P + ++ G P VS+ + +
Sbjct: 3406 SAEPEEGMHIHLEAAM-NSETVVTEGSELPSSLPMTEDENADGQLAEVEPSVSLTVEQTN 3464
Query: 1394 VADADHPLETA-VELGSPVNSCTVEP 1418
+ + DH +ETA EL C+ +P
Sbjct: 3465 IEEKDH-IETAECELVDVSPGCSSQP 3489
Score = 47 (21.6 bits), Expect = 5.4e-08, Sum P(5) = 5.4e-08
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 332 EHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMC--QAESSDSPKLKEEGLE 383
EHL + +GR R +++ YE++ EE ++ Q E ++ +E LE
Sbjct: 551 EHLKSYKKHKHGR--RIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLE 602
Score = 43 (20.2 bits), Expect = 9.5e-172, Sum P(4) = 9.5e-172
Identities = 19/87 (21%), Positives = 39/87 (44%)
Query: 732 DVAGPDQKPAEQSVRVVQSNQPINLPATHDSS-SQPSGSTPAQVPSMDLGNVASDTKEVL 790
DVAG + + + S Q ++ +HD SQ P P +G + + + +
Sbjct: 2614 DVAGQLESMSNDEKTNISSEQVPDV--SHDLKVSQDQTDIP---P---VGGIVPENLQEI 2665
Query: 791 SENSSSKGGVIPILALSNMKAVERVNI 817
+ +S GV+P + +S + ++ +I
Sbjct: 2666 VDVPASPHGVVPDVVVSQSEEIQSPSI 2692
Score = 42 (19.8 bits), Expect = 2.0e-180, Sum P(5) = 2.0e-180
Identities = 41/182 (22%), Positives = 58/182 (31%)
Query: 2063 PSASSI-PRGE-SKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKP 2120
PS S P+ + S + E I E N V + LP S E+E +G
Sbjct: 3392 PSGCSTEPQIQLSSSAEPEEGMHIHLEAAMNSETVVTEGSELPSSLPMTEDENADGQLAE 3451
Query: 2121 VGSEKESIASAVPLDESKGPDAEVSSQTAIEGG--GVVSIPVPEEADGPASF-LAAEEEK 2177
V ++E + + G + P D + E
Sbjct: 3452 VEPSVSLTVEQTNIEEKDHIETAECELVDVSPGCSSQPEVKFPPSPDAVGGMDVHLETVV 3511
Query: 2178 NECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAV--ALENTSEGMGGPSPPLVIAEDK 2235
E +D SS+ + E K+ E P D +DG T EG S LV E
Sbjct: 3512 TEDTDSN---SSLPKTEEKDAE----NPSDRLDGESDGTTVATVEGTCVESNSLVAEESN 3564
Query: 2236 TE 2237
E
Sbjct: 3565 IE 3566
Score = 42 (19.8 bits), Expect = 3.2e-174, Sum P(5) = 3.2e-174
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 732 DVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLG-NVASDTKE 788
D A +Q P E+SV V Q +N P ++++Q + A+V +G +V S+ KE
Sbjct: 2363 DDADTEQNP-EESVSV----QGVNRPKVGNANTQMEDTDEAKVL---VGCSVESEEKE 2412
Score = 42 (19.8 bits), Expect = 1.9e-169, Sum P(3) = 1.9e-169
Identities = 20/97 (20%), Positives = 39/97 (40%)
Query: 2111 EEKIEGFSKPVGSEKESIASAVP-LDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPAS 2169
EE+ SK + +E AS + G +V++QT E S+ + P
Sbjct: 2091 EEQTNVNSKIETNSEELQASRTDEVPHVDGKSVDVANQTVKEDEAKHSVEIQSSMLEPDE 2150
Query: 2170 FLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPM 2206
A ++ + D +P+ S + + K ++P+
Sbjct: 2151 LPNAGQKGHSSIDLQPLVLVTSNENAMSLDDKDYDPI 2187
Score = 41 (19.5 bits), Expect = 3.2e-178, Sum P(5) = 3.2e-178
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 1529 GGTGDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDIE 1570
G G D ++P LV S+ M L +D+ + DIE
Sbjct: 2155 GQKGHSSID--LQPLVLVTSNENAMSLDDKDYDPISKSADIE 2194
Score = 39 (18.8 bits), Expect = 3.6e-180, Sum P(4) = 3.6e-180
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 1506 IATSCDTASLDDSHDNGNVEVLCGGTGDKKADCKMEP 1542
++ S +++D D +VE D A+C EP
Sbjct: 2954 LSISAVQKNIEDK-DQSHVETAGSELVDVSAECSTEP 2989
Score = 38 (18.4 bits), Expect = 1.4e-164, Sum P(3) = 1.4e-164
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1768 SLAPWEAKIDGSSEKDPVSSQSV 1790
+L+ +AK D +++ P SQSV
Sbjct: 1815 NLSGTKAKFDAVAKEQPHFSQSV 1837
Score = 37 (18.1 bits), Expect = 1.0e-171, Sum P(5) = 1.0e-171
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 1016 CSVTPTVETPP 1026
CS P V+ PP
Sbjct: 2985 CSTEPQVQLPP 2995
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 629 (226.5 bits), Expect = 3.6e-61, Sum P(4) = 3.6e-61
Identities = 138/300 (46%), Positives = 189/300 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 280 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 335
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 336 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 395
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 396 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 455
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 456 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 515
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 516 PDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 570
Score = 51 (23.0 bits), Expect = 3.6e-61, Sum P(4) = 3.6e-61
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 342 YGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
+GRG R R+ Y + TE+++ K E +++EE +K
Sbjct: 586 FGRGSRHRKEVDYSDSLTEKQWLKAI--EEGTLEEIEEEVRQK 626
Score = 48 (22.0 bits), Expect = 7.4e-61, Sum P(4) = 7.4e-61
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 801 IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+P + + VER+ + EEK S+ + + DS+TE
Sbjct: 562 LPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE 604
Score = 44 (20.5 bits), Expect = 3.6e-61, Sum P(4) = 3.6e-61
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 793 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 847
Query: 2234 DKTENEIEED 2243
D +E E EED
Sbjct: 848 DDSEEEQEED 857
Score = 44 (20.5 bits), Expect = 2.2e-60, Sum P(3) = 2.2e-60
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 568
GS+S S ++ GR + Q + RRR + P SDD +E+
Sbjct: 804 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD---------DSEEE 853
Query: 569 QSESLNPSGGE 579
Q E + SG E
Sbjct: 854 QEEDRSGSGSE 864
Score = 42 (19.8 bits), Expect = 5.8e-61, Sum P(4) = 5.8e-61
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 783 IEKEDDSEGEESEEEEEGEEEGSESES 809
Score = 42 (19.8 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 819 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE-----QEEDRSG 860
Score = 41 (19.5 bits), Expect = 3.6e-61, Sum P(4) = 3.6e-61
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 905 EAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSR 940
++ R+R + +GPS P S K ++ + K R
Sbjct: 627 KSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKR 662
Score = 40 (19.1 bits), Expect = 9.4e-61, Sum P(4) = 9.4e-61
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK 1836
D +EK + +++ EG+ E + E Q S ++ D A +TP T +K
Sbjct: 600 DSLTEKQWL--KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSDAGPSTPTTSTRSRDK 652
Query: 1837 DPDS 1840
D +S
Sbjct: 653 DDES 656
Score = 39 (18.8 bits), Expect = 5.8e-61, Sum P(4) = 5.8e-61
Identities = 30/126 (23%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K + K + K GR P +K P PNL
Sbjct: 633 KRDSDA-GPSTPTTSTRSRDKDDESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 682
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 683 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 741
Query: 1156 ADLSSD 1161
DL D
Sbjct: 742 NDLEKD 747
Score = 39 (18.8 bits), Expect = 2.1e-58, Sum P(2) = 2.1e-58
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 321 VSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373
V +G K K + + RG RA+ V S ++ E+E ++ D
Sbjct: 814 VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 866
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 655 (235.6 bits), Expect = 4.9e-59, Sum P(2) = 4.9e-59
Identities = 157/380 (41%), Positives = 221/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 972 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1030
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1031 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1090
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1091 SQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1150
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1151 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1210
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1211 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1262
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1263 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1319
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D KE+G EK+
Sbjct: 1320 RKRRRNVDKDSGKEDG-EKA 1338
Score = 51 (23.0 bits), Expect = 4.9e-59, Sum P(2) = 4.9e-59
Identities = 28/116 (24%), Positives = 46/116 (39%)
Query: 1570 EIFNMEGGP--SNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSE 1627
+ FN+EG ++++ S + +SA+ + +E + + D + E KS
Sbjct: 1435 QTFNLEGSQIYEDSIVLQS---VFKSARQKIAKEEESEDESNDDEDEDDEEESESESKSV 1491
Query: 1628 N----MGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDE 1679
+ +KD+ S E G + KA D DE Q D SG DE
Sbjct: 1492 KVKIKLNKKDEKSREKGKGKKRQSRAKAKPVVSDDDSDEDQ-DENDQSEASGSDDE 1546
Score = 43 (20.2 bits), Expect = 3.4e-58, Sum P(2) = 3.4e-58
Identities = 16/81 (19%), Positives = 39/81 (48%)
Query: 1776 IDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGS 1834
++GS +D + QSV + +++ +A+ + D S E + + + + + K + +
Sbjct: 1439 LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNDDEDEDDEEESESESKSVKVKIKLN 1498
Query: 1835 EKDPDSSFAAQEDPKESVVEA 1855
+KD S + ++S +A
Sbjct: 1499 KKDEKSREKGKGKKRQSRAKA 1519
Score = 41 (19.5 bits), Expect = 5.5e-58, Sum P(2) = 5.5e-58
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSE 692
+ K++ G +R+ + +A P +SD + + N QSE
Sbjct: 1500 KDEKSREKGKGKKRQSRAKA--KPVVSDDDSDEDQDENDQSE 1539
Score = 41 (19.5 bits), Expect = 5.5e-58, Sum P(2) = 5.5e-58
Identities = 17/83 (20%), Positives = 33/83 (39%)
Query: 665 RGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQP 724
+ RQ + S+ + + + + E+ S + + + K+D S+E + Q
Sbjct: 1456 KSARQKIAKEEESEDESNDDEDEDDEEESESESKSVKVKIKLNKKDEKSREKGKGKKRQS 1515
Query: 725 CGVA---TSADVAGPDQKPAEQS 744
A S D + DQ +QS
Sbjct: 1516 RAKAKPVVSDDDSDEDQDENDQS 1538
Score = 40 (19.1 bits), Expect = 7.0e-58, Sum P(2) = 7.0e-58
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 1986 VVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVE 2020
+V ++V + + +++ E++ S DDE + E E
Sbjct: 1449 IVLQSVFKSARQKIAKEEESEDESNDDEDEDDEEE 1483
Score = 37 (18.1 bits), Expect = 1.5e-57, Sum P(2) = 1.5e-57
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIA 2232
+E+E N+ D++ S S+ +S + + K D + + P+V
Sbjct: 1468 SEDESNDDEDEDDEEESESESKSVKVKIK-LNKKDEKSREKGKGKKRQSRA-KAKPVVSD 1525
Query: 2233 EDKTENEIEED 2243
+D E++ E D
Sbjct: 1526 DDSDEDQDEND 1536
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 653 (234.9 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 155/380 (40%), Positives = 222/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 1003 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1061
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1062 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1121
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1122 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1181
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1182 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1241
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1242 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1293
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1294 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1350
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D +KE+ +EK+
Sbjct: 1351 RKRRRNVDKDPVKED-VEKA 1369
Score = 47 (21.6 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSE 692
+ R T G P R GK + P +SD + E + N QSE
Sbjct: 1534 KGRDTGKGKKRPNR-GKAK----PVVSDFDSDEEQEENEQSE 1570
Score = 39 (18.8 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIA 2232
+EEE NE +++ S S+ +S + + K + + G + G + P+V
Sbjct: 1499 SEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEE--KGRDTGKGKKRPNRGKAKPVVSD 1556
Query: 2233 EDKTENEIEED 2243
D E + E +
Sbjct: 1557 FDSDEEQEENE 1567
Score = 37 (18.1 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
I K E N E + +E SEA
Sbjct: 1493 IAKEEESEEESNEEEEEDDEEESESEA 1519
Score = 37 (18.1 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 1992 QEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMD 2026
+EEE E S E++ + ES+ V+ ++++
Sbjct: 1495 KEEESEEESNEEEEEDDEEESESEAKSVKVKIKLN 1529
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 653 (234.9 bits), Expect = 4.0e-58, Sum P(2) = 4.0e-58
Identities = 155/380 (40%), Positives = 222/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1063
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1064 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1123
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1124 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1183
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1184 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1243
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1244 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1295
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1296 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1352
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D +KE+ +EK+
Sbjct: 1353 RKRRRNVDKDPVKED-VEKA 1371
Score = 45 (20.9 bits), Expect = 4.0e-58, Sum P(2) = 4.0e-58
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSE 692
+ R T G P R GK + P +SD + E N QSE
Sbjct: 1554 KGRDTGKGKKRPNR-GKAK----PVVSDFDSDEEQDENEQSE 1590
Score = 41 (19.5 bits), Expect = 5.4e-56, Sum P(3) = 5.4e-56
Identities = 41/174 (23%), Positives = 67/174 (38%)
Query: 2081 NNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGP 2140
N+ ++ EG + RQ + LP S ++ E E KPV +K S G
Sbjct: 1416 NSQLEIEGNSSGRQLSEVFIQLP-SRKELPEY-YELIRKPVDFKKIKERIRNHKYRSLGD 1473
Query: 2141 -DAEV-----SSQTA-IEGGGVV--SIPVPEEADGPASFLAAEEEKNECS--DKEPVGSS 2189
+ +V ++QT +EG + SI + +A EEE E S ++E
Sbjct: 1474 LEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEEEEEDEE 1533
Query: 2190 VSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKTENEIEED 2243
S+ E+K + K G + G + P+V D E + E +
Sbjct: 1534 ESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRGKAKPVVSDFDSDEEQDENE 1587
Score = 38 (18.4 bits), Expect = 1.1e-55, Sum P(3) = 1.1e-55
Identities = 12/63 (19%), Positives = 33/63 (52%)
Query: 1776 IDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGS 1834
++GS +D + QSV + +++ +A+ + + S E+ + + A + + K + +
Sbjct: 1490 LEGSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLN 1549
Query: 1835 EKD 1837
+K+
Sbjct: 1550 KKE 1552
Score = 37 (18.1 bits), Expect = 5.4e-56, Sum P(3) = 5.4e-56
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 687 SNLQSENNSGGLRLSK 702
S L+ E NS G +LS+
Sbjct: 1417 SQLEIEGNSSGRQLSE 1432
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 653 (234.9 bits), Expect = 4.0e-58, Sum P(2) = 4.0e-58
Identities = 155/380 (40%), Positives = 222/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1063
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1064 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1123
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1124 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1183
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1184 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1243
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1244 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1295
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1296 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1352
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D +KE+ +EK+
Sbjct: 1353 RKRRRNVDKDPVKED-VEKA 1371
Score = 45 (20.9 bits), Expect = 4.0e-58, Sum P(2) = 4.0e-58
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSE 692
+ R T G P R GK + P +SD + E N QSE
Sbjct: 1554 KGRDTGKGKKRPNR-GKAK----PVVSDFDSDEEQDENEQSE 1590
Score = 41 (19.5 bits), Expect = 5.4e-56, Sum P(3) = 5.4e-56
Identities = 41/174 (23%), Positives = 67/174 (38%)
Query: 2081 NNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGP 2140
N+ ++ EG + RQ + LP S ++ E E KPV +K S G
Sbjct: 1416 NSQLEIEGNSSGRQLSEVFIQLP-SRKELPEY-YELIRKPVDFKKIKERIRNHKYRSLGD 1473
Query: 2141 -DAEV-----SSQTA-IEGGGVV--SIPVPEEADGPASFLAAEEEKNECS--DKEPVGSS 2189
+ +V ++QT +EG + SI + +A EEE E S ++E
Sbjct: 1474 LEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEEEEEDEE 1533
Query: 2190 VSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKTENEIEED 2243
S+ E+K + K G + G + P+V D E + E +
Sbjct: 1534 ESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRGKAKPVVSDFDSDEEQDENE 1587
Score = 38 (18.4 bits), Expect = 1.1e-55, Sum P(3) = 1.1e-55
Identities = 12/63 (19%), Positives = 33/63 (52%)
Query: 1776 IDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGS 1834
++GS +D + QSV + +++ +A+ + + S E+ + + A + + K + +
Sbjct: 1490 LEGSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLN 1549
Query: 1835 EKD 1837
+K+
Sbjct: 1550 KKE 1552
Score = 37 (18.1 bits), Expect = 5.4e-56, Sum P(3) = 5.4e-56
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 687 SNLQSENNSGGLRLSK 702
S L+ E NS G +LS+
Sbjct: 1417 SQLEIEGNSSGRQLSE 1432
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 651 (234.2 bits), Expect = 9.4e-58, Sum P(2) = 9.4e-58
Identities = 155/380 (40%), Positives = 221/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 980 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1038
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1039 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1098
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1099 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1158
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1159 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1218
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1219 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1270
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1271 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1327
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D KE+ +EK+
Sbjct: 1328 RKRRRNVDKDPAKED-VEKA 1346
Score = 43 (20.2 bits), Expect = 9.4e-58, Sum P(2) = 9.4e-58
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 1776 IDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGS 1834
++GS +D + QSV + +++ +A+ + D S E+ + + + + + K + +
Sbjct: 1447 LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLN 1506
Query: 1835 EKD 1837
+KD
Sbjct: 1507 KKD 1509
Score = 42 (19.8 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 646 MQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSE 692
+ K + + + G RGK + P +SD + E N QSE
Sbjct: 1505 LNKKDEKGRDKGKGKKRPNRGKAK----PVVSDFDSDEEQDENEQSE 1547
Score = 39 (18.8 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 2171 LAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVD--GAVALENTSEGMGGPSPP 2228
+A EEE + S++E + ES+ K ++ D G + G + P
Sbjct: 1470 IAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKP 1529
Query: 2229 LVIAEDKTENEIEED 2243
+V D E + E +
Sbjct: 1530 VVSDFDSDEEQDENE 1544
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 651 (234.2 bits), Expect = 9.5e-58, Sum P(2) = 9.5e-58
Identities = 155/380 (40%), Positives = 221/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1040
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1041 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1100
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1101 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1160
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1161 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1220
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1221 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1272
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1273 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1329
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D KE+ +EK+
Sbjct: 1330 RKRRRNVDKDPAKED-VEKA 1348
Score = 43 (20.2 bits), Expect = 9.5e-58, Sum P(2) = 9.5e-58
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 1776 IDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGS 1834
++GS +D + QSV + +++ +A+ + D S E+ + + + + + K + +
Sbjct: 1449 LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLN 1508
Query: 1835 EKD 1837
+KD
Sbjct: 1509 KKD 1511
Score = 42 (19.8 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 646 MQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSE 692
+ K + + + G RGK + P +SD + E N QSE
Sbjct: 1507 LNKKDEKGRDKGKGKKRPNRGKAK----PVVSDFDSDEEQDENEQSE 1549
Score = 39 (18.8 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 2171 LAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVD--GAVALENTSEGMGGPSPP 2228
+A EEE + S++E + ES+ K ++ D G + G + P
Sbjct: 1472 IAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKP 1531
Query: 2229 LVIAEDKTENEIEED 2243
+V D E + E +
Sbjct: 1532 VVSDFDSDEEQDENE 1546
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 651 (234.2 bits), Expect = 9.5e-58, Sum P(2) = 9.5e-58
Identities = 155/380 (40%), Positives = 221/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1040
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1041 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1100
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1101 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1160
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1161 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1220
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1221 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1272
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1273 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1329
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D KE+ +EK+
Sbjct: 1330 RKRRRNVDKDPAKED-VEKA 1348
Score = 43 (20.2 bits), Expect = 9.5e-58, Sum P(2) = 9.5e-58
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 1776 IDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGS 1834
++GS +D + QSV + +++ +A+ + D S E+ + + + + + K + +
Sbjct: 1449 LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLN 1508
Query: 1835 EKD 1837
+KD
Sbjct: 1509 KKD 1511
Score = 42 (19.8 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 646 MQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSE 692
+ K + + + G RGK + P +SD + E N QSE
Sbjct: 1507 LNKKDEKGRDKGKGKKRPNRGKAK----PVVSDFDSDEEQDENEQSE 1549
Score = 39 (18.8 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 2171 LAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVD--GAVALENTSEGMGGPSPP 2228
+A EEE + S++E + ES+ K ++ D G + G + P
Sbjct: 1472 IAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKP 1531
Query: 2229 LVIAEDKTENEIEED 2243
+V D E + E +
Sbjct: 1532 VVSDFDSDEEQDENE 1546
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 651 (234.2 bits), Expect = 1.0e-57, Sum P(2) = 1.0e-57
Identities = 155/380 (40%), Positives = 221/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 998 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1056
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1057 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1116
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1117 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1176
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1177 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1236
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1237 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1288
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1289 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1345
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D KE+ +EK+
Sbjct: 1346 RKRRRNVDKDPAKED-VEKA 1364
Score = 43 (20.2 bits), Expect = 1.0e-57, Sum P(2) = 1.0e-57
Identities = 40/175 (22%), Positives = 69/175 (39%)
Query: 2080 ANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKG 2139
+N+ ++ EG + RQ + LP S ++ E E KPV +K S G
Sbjct: 1408 SNSQLEIEGNSSGRQLSEVFIQLP-SRKELPEY-YELIRKPVDFKKIKERIRNHKYRSLG 1465
Query: 2140 P-DAEV-----SSQTA-IEGGGVV--SIPVPEEADGPASFLAAEEEKNECSDKEPVGSSV 2190
+ +V ++QT +EG + SI + +A EEE + S++E
Sbjct: 1466 DLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDE 1525
Query: 2191 SQIESKEPEAKAFEPMDVVD--GAVALENTSEGMGGPSPPLVIAEDKTENEIEED 2243
+ ES+ K ++ D G + G + P+V D E + E +
Sbjct: 1526 EESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDERE 1580
Score = 43 (20.2 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 1776 IDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGS 1834
++GS +D + QSV + +++ +A+ + D S E+ + + + + + K + +
Sbjct: 1483 LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLN 1542
Query: 1835 EKD 1837
+KD
Sbjct: 1543 KKD 1545
Score = 41 (19.5 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 685 SKSNLQSENNSGGLRLSK 702
S S L+ E NS G +LS+
Sbjct: 1408 SNSQLEIEGNSSGRQLSE 1425
Score = 38 (18.4 bits), Expect = 3.5e-57, Sum P(2) = 3.5e-57
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 684 ESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQ 743
E +S ++++ ++L+K G+ ++ N+ + +P V + D + +Q EQ
Sbjct: 1525 EEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKP--VVSDFD-SDEEQDEREQ 1581
Query: 744 S 744
S
Sbjct: 1582 S 1582
Score = 38 (18.4 bits), Expect = 6.8e-56, Sum P(3) = 6.8e-56
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 1992 QEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGD 2030
+EEE + S E++ + ES+ V+ ++++ + D
Sbjct: 1508 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDD 1546
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 651 (234.2 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 155/380 (40%), Positives = 221/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1040
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1041 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1100
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1101 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1160
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1161 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1220
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1221 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1272
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1273 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1329
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D KE+ +EK+
Sbjct: 1330 RKRRRNVDKDPAKED-VEKA 1348
Score = 43 (20.2 bits), Expect = 5.0e-56, Sum P(3) = 5.0e-56
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 1776 IDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGS 1834
++GS +D + QSV + +++ +A+ + D S E+ + + + + + K + +
Sbjct: 1467 LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLN 1526
Query: 1835 EKD 1837
+KD
Sbjct: 1527 KKD 1529
Score = 42 (19.8 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 646 MQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSE 692
+ K + + + G RGK + P +SD + E N QSE
Sbjct: 1525 LNKKDEKGRDKGKGKKRPNRGKAK----PVVSDFDSDEEQDENEQSE 1567
Score = 42 (19.8 bits), Expect = 6.3e-56, Sum P(3) = 6.3e-56
Identities = 40/174 (22%), Positives = 68/174 (39%)
Query: 2081 NNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGP 2140
N+ ++ EG + RQ + LP S ++ E E KPV +K S G
Sbjct: 1393 NSQLEIEGNSSGRQLSEVFIQLP-SRKELPEY-YELIRKPVDFKKIKERIRNHKYRSLGD 1450
Query: 2141 -DAEV-----SSQTA-IEGGGVV--SIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVS 2191
+ +V ++QT +EG + SI + +A EEE + S++E
Sbjct: 1451 LEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEE 1510
Query: 2192 QIESKEPEAKAFEPMDVVD--GAVALENTSEGMGGPSPPLVIAEDKTENEIEED 2243
+ ES+ K ++ D G + G + P+V D E + E +
Sbjct: 1511 ESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDENE 1564
Score = 37 (18.1 bits), Expect = 5.0e-56, Sum P(3) = 5.0e-56
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 687 SNLQSENNSGGLRLSK 702
S L+ E NS G +LS+
Sbjct: 1394 SQLEIEGNSSGRQLSE 1409
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 653 (234.9 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 155/380 (40%), Positives = 222/380 (58%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLD 66
G +++ N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LD
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLD 1063
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+
Sbjct: 1064 RILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG 1123
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1124 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1183
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1184 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDD 1243
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLK 305
R E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1244 ETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD--- 1295
Query: 306 ALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEK 365
A E + + + +R ++ AL + + RA E + EE E +K
Sbjct: 1296 AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKK 1352
Query: 366 MCQAESSDSPKLKEEGLEKS 385
+ + D +KE+ +EK+
Sbjct: 1353 RKRRRNVDKDPVKED-VEKA 1371
Score = 39 (18.8 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 1781 EKDPVSSQSVLEGS-KETV 1798
EK P +SQ +EG+ KE+V
Sbjct: 1411 EKVPCNSQLEIEGNRKESV 1429
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 619 (223.0 bits), Expect = 2.7e-57, Sum P(2) = 2.7e-57
Identities = 124/262 (47%), Positives = 172/262 (65%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK 71
GN K +S+ N M+LR CNHPYL + A+ + K P IVR GK E+LDRLLPK
Sbjct: 653 GNGKSKSLQNLTMQLRKCCNHPYLF-VGADY--NMCKK---PEIVRASGKFELLDRLLPK 706
Query: 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131
LK HR+L FS MTRL+D++E YL+ Y YLRLDG T RG L+ +FN+ DSP+F+
Sbjct: 707 LKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFM 766
Query: 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191
FLLS RAGG+G+NLQ ADT+IIFD+DWNPQ+D QA+ RAHRIGQK++V V ++ ++E
Sbjct: 767 FLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIE 826
Query: 192 EQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXXX 251
E + A+ K+G+ + I AG F+ ++A+DRRE LE ++ +
Sbjct: 827 EVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMSKGTSSLGEDVPSEREINRL 886
Query: 252 XXRSESEIDVFESVDKQRREEE 273
R+E E +FE +D++RR++E
Sbjct: 887 AARTEEEFWMFEQMDEERRKKE 908
Score = 62 (26.9 bits), Expect = 2.7e-57, Sum P(2) = 2.7e-57
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 341 HYGR--GKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS--SSAPA 396
H+G GKR R+ Y + ++ ++ K ++E D+ K+ ++ T +S S A A
Sbjct: 939 HFGSLTGKRKRKEAVYSDSLSDLQWMKAMESEDEDASKVSQKRKRTDTKTRMSNGSKAEA 998
Query: 397 VYS 399
V S
Sbjct: 999 VLS 1001
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 638 (229.6 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 151/391 (38%), Positives = 226/391 (57%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1083
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 1263
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1264 PDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1318
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEE 362
A E + + + +++ ++ +L + + +++++ E+ T EE
Sbjct: 1319 ---AEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQW-----LKQLKAAIEEGTLEE 1370
Query: 363 FEKMCQAESSDSPKLKEEGLEKSLPTVVSSS 393
E+ + + S + ++ S PT + S
Sbjct: 1371 IEEEVRQKKSSRKRKRDSEAGSSTPTTSTRS 1401
Score = 44 (20.5 bits), Expect = 4.6e-55, Sum P(3) = 4.6e-55
Identities = 25/119 (21%), Positives = 45/119 (37%)
Query: 1006 AKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
++K+ D + S TPT T + E+ + + A + P + +
Sbjct: 1381 SRKRKRDSEAGSSTPTTSTRSR--DKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVD 1438
Query: 1066 ALKPENKAQAGR-IENIANSSPDDKSLPMVPNLETAPPGFDIPIEK-HNEQSRNQNNPE 1122
A+ + +GR + + P K LP L P F E+ N + R+ N+ E
Sbjct: 1439 AVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLE 1497
Score = 43 (20.2 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1571 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSDEE-----QEEDRSG 1612
Score = 43 (20.2 bits), Expect = 5.9e-55, Sum P(3) = 5.9e-55
Identities = 31/126 (24%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K E K + K GR P +K P PNL
Sbjct: 1385 KRDSEA-GSSTPTTSTRSRDKDEESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 1434
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 1435 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 1493
Query: 1156 ADLSSD 1161
DL D
Sbjct: 1494 NDLEKD 1499
Score = 42 (19.8 bits), Expect = 3.6e-56, Sum P(2) = 3.6e-56
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1535 IEKEDDSEGEESEEEEEGEEEGSESES 1561
Score = 41 (19.5 bits), Expect = 4.6e-56, Sum P(2) = 4.6e-56
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDD 554
GS+S S ++ GR + Q + RRR + P SDD
Sbjct: 1556 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1600
Score = 41 (19.5 bits), Expect = 4.6e-55, Sum P(3) = 4.6e-55
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 1545 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 1599
Query: 2234 DKTENEIEED 2243
D ++ E EED
Sbjct: 1600 DDSDEEQEED 1609
Score = 39 (18.8 bits), Expect = 1.5e-54, Sum P(3) = 1.5e-54
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 1789 SVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDS 1840
++ EG+ E + E Q S ++ D A +TP T +KD +S
Sbjct: 1362 AIEEGTLEEIEEEVRQKKSSRKRKR-----DSEAGSSTPTTSTRSRDKDEES 1408
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 617 (222.3 bits), Expect = 4.5e-56, Sum P(4) = 4.5e-56
Identities = 134/305 (43%), Positives = 189/305 (61%)
Query: 13 NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPI--VRLCGKLEMLDRLLP 70
N+ +S+ N+++ LR +CNHP+L + E ++ + R+ GKLE+L R+LP
Sbjct: 634 NTGSKSLRNTMIHLRKLCNHPFLFENVEESCRNFWDARFISAVDLYRVSGKLELLSRILP 693
Query: 71 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 130
KL+AT HRVL F MT ++ ++ED+L +YLRLDG T +RGAL+DKFN +S +F
Sbjct: 694 KLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGALLDKFNAPNSEYF 753
Query: 131 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190
+F+LS RAGG+G+NLQ ADTVIIFD+DWNP D+QAQ RAHRIGQK +V V R T +V
Sbjct: 754 LFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVRVFRLITANSV 813
Query: 191 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXX 249
EE++ A+A +KL V + I AG FDN ++ +RRE LE++++ E + EE
Sbjct: 814 EEKILAAARYKLNVDEKVIQAGKFDNRSTGAERREILENIIKTENESEEDEEVPNDEDIN 873
Query: 250 XXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYE 309
RSE E ++F+ +D++R E E A K R +G D P L + TD KA E
Sbjct: 874 DILSRSEEEFELFQKMDQERFENEQAQKAKP-RLVGEDEIPRDILRAADETDYIEKAKEE 932
Query: 310 AMKIY 314
Y
Sbjct: 933 GRVPY 937
Score = 61 (26.5 bits), Expect = 4.5e-56, Sum P(4) = 4.5e-56
Identities = 24/96 (25%), Positives = 32/96 (33%)
Query: 1155 LADLSSDDKTCSVTPAMETAPGFDIPIEKGVE-QSGTEIDAKVKWKNTPLPGEAIVAGIE 1213
L L +D T S E P P + +S + +K + P P
Sbjct: 964 LEKLFDEDDTTSARTEEEPNPAQPGPSSVSISLESSCDTQKDIKVDDVPAPPLTFKVPRL 1023
Query: 1214 VFKPENKTDGDSVEKLEDTVDDHSLVKELIHRSPDH 1249
K + E DD+SL KE HR DH
Sbjct: 1024 TIKLGGDEKKRKHNRSESDSDDNSLKKEKKHRKEDH 1059
Score = 60 (26.2 bits), Expect = 4.5e-56, Sum P(4) = 4.5e-56
Identities = 25/104 (24%), Positives = 45/104 (43%)
Query: 1782 KDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSS 1841
++P + +G KE + D P+K +H D S E+K + + D DS+
Sbjct: 1111 EEPPKKEHRDKGRKEEKSHKHRSDDDDSSPKK-KKHRDSDES---SEKKKKKHKHDSDSA 1166
Query: 1842 FAAQEDPKESVVEAGDQMGVSLGGA--TVMEKSSEDLATPPLSL 1883
+E SV + M + +G ++ ++ED PP+ L
Sbjct: 1167 LKLREGSPLSVDKEKSPMKIRIGQGQPSISLAANEDKNHPPIKL 1210
Score = 53 (23.7 bits), Expect = 2.4e-55, Sum P(4) = 2.4e-55
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1781 EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKL--PEHLDIPASLATPEEKTEGSEKDP 1838
E P+S K + + + ++ +K P L + P ++T+GS+KD
Sbjct: 1171 EGSPLSVDKEKSPMKIRIGQGQPSISLAANEDKNHPPIKLKLNVKFNMPSQETDGSKKDK 1230
Query: 1839 DSSFAAQEDPKESVVE 1854
+E KE E
Sbjct: 1231 KEPHKEKEKDKEKEKE 1246
Score = 53 (23.7 bits), Expect = 1.3e-52, Sum P(5) = 1.3e-52
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 1216 KPENKTDGDSVEKLED--TVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKM----P 1269
K E++ G EK + DD S K+ HR D S + S+ + K+ P
Sbjct: 1115 KKEHRDKGRKEEKSHKHRSDDDDSSPKKKKHRDSDESSEKKKKKHKHDSDSALKLREGSP 1174
Query: 1270 L-----ETPLIMKSTEG-PSVSMKADDVADH 1294
L ++P+ ++ +G PS+S+ A++ +H
Sbjct: 1175 LSVDKEKSPMKIRIGQGQPSISLAANEDKNH 1205
Score = 52 (23.4 bits), Expect = 1.1e-53, Sum P(4) = 1.1e-53
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 737 DQKPAEQSVRVVQSNQPINLPATHDSSSQPSG---STPAQVPSMDLGNVASDTKEVLSEN 793
D++ + +R+ Q I+L A D + P + +PS + D KE E
Sbjct: 1178 DKEKSPMKIRIGQGQPSISLAANEDKNHPPIKLKLNVKFNMPSQETDGSKKDKKEPHKEK 1237
Query: 794 SSSK 797
K
Sbjct: 1238 EKDK 1241
Score = 45 (20.9 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 328 KRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEE 380
K K E G +H + K + E TEEE + + E+ + KEE
Sbjct: 1243 KEKEEDKGKEKEKHKDKDKDKEHKKKSREDETEEE--RRARKEAKRLKRQKEE 1293
Score = 43 (20.2 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 2221 GMGGPSPPLVIAEDKTENEIEEDPVVN-SVAVEESKGSEAD 2260
G G PS L EDK I+ V ++ +E+ GS+ D
Sbjct: 1189 GQGQPSISLAANEDKNHPPIKLKLNVKFNMPSQETDGSKKD 1229
Score = 43 (20.2 bits), Expect = 1.1e-53, Sum P(4) = 1.1e-53
Identities = 15/67 (22%), Positives = 24/67 (35%)
Query: 894 KRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSK 953
K H +K+ RR +K+ DAKL + K+ + +S+
Sbjct: 1263 KEHKKKSREDETEEERRARKEAKRLKRQKEEQEDDAKLQEKLARKAAKKEQKRLEKEKSE 1322
Query: 954 QETADVN 960
T VN
Sbjct: 1323 SSTGTVN 1329
Score = 42 (19.8 bits), Expect = 1.4e-53, Sum P(4) = 1.4e-53
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 1110 KHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSS 1160
K ++ + + + K +E A + E+EK +++ VNL+ S
Sbjct: 1285 KRLKRQKEEQEDDAKLQEKLARKAAKKEQKRLEKEKSESSTGTVNLSAAGS 1335
Score = 41 (19.5 bits), Expect = 1.1e-53, Sum P(4) = 1.1e-53
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 560 PDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVK 605
P+P P S S++ T D V +P P+ V +K
Sbjct: 982 PNP-AQPGPSSVSISLESSCDTQKDIKVDDVPAPPLTFKVPRLTIK 1026
Score = 39 (18.8 bits), Expect = 2.4e-53, Sum P(5) = 2.4e-53
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 1110 KHNEQSRNQNNPEVKGEETPVSSEAPASTEA 1140
K ++ R +++P+ K +E E ST++
Sbjct: 1049 KKEKKHRKEDHPKEKEKEKKKEKEQEKSTDS 1079
Score = 38 (18.4 bits), Expect = 4.5e-56, Sum P(4) = 4.5e-56
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKA 2202
E+EK++ DK+ S+ + E E +A
Sbjct: 1252 EKEKHKDKDKDKEHKKKSREDETEEERRA 1280
Score = 37 (18.1 bits), Expect = 1.1e-53, Sum P(4) = 1.1e-53
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1693 SPVHVVEREKSEEL-----GLPSLSSATKEEK 1719
SP+ V ++EKS G PS+S A E+K
Sbjct: 1173 SPLSV-DKEKSPMKIRIGQGQPSISLAANEDK 1203
Score = 37 (18.1 bits), Expect = 1.4e-53, Sum P(4) = 1.4e-53
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 343 GRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
G K+ + RS E + +K + D PK KE+ +K
Sbjct: 1029 GDEKKRKHNRS-ESDSDDNSLKKEKKHRKEDHPKEKEKEKKK 1069
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 636 (228.9 bits), Expect = 1.1e-55, Sum P(3) = 1.1e-55
Identities = 135/297 (45%), Positives = 190/297 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE--VDTL-IPKHYL--PPIVRLCGKLEMLD 66
G +++ N++M+L+ ICNHPY+ Q H EE + L P + P + R GK E+LD
Sbjct: 1000 GKGGAKTLMNTIMQLKKICNHPYMFQ-HIEESFAEHLGFPNGIISGPDLYRASGKFELLD 1058
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKLKAT+HRVL F MT L+ ++EDY ++ + YLRLDG T DR L+ KFN++
Sbjct: 1059 RILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEG 1118
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR T
Sbjct: 1119 SQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1178
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXX 245
V +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + E
Sbjct: 1179 VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNMEEDEVPDD 1238
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R+E E ++F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1239 ETLNQMIARNEDEFELFMRMDLDRRREDARNPKRKPRLMEED-----ELPSWILKDD 1290
Score = 51 (23.0 bits), Expect = 1.1e-55, Sum P(3) = 1.1e-55
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 777 MDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLP 836
MDL D + + + +P L + VER+ + EEK S+ + +
Sbjct: 1258 MDLDRRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCEEEEEKIFGRGSRHRRDVD 1317
Query: 837 ALDSITE 843
D++TE
Sbjct: 1318 YSDALTE 1324
Score = 45 (20.9 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 342 YGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEE 380
+GRG R R Y + TE+++ + E + +++EE
Sbjct: 1306 FGRGSRHRRDVDYSDALTEKQWLRAI--EDGNLEEIEEE 1342
Score = 45 (20.9 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 652 SRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENN 694
S++ + G +RR R P +SD + + + N QSE +
Sbjct: 1522 SKRDERGQDKGKRRPSR-GKAKPVVSDDDSDEDQEDNEQSEGS 1563
Score = 41 (19.5 bits), Expect = 1.1e-55, Sum P(3) = 1.1e-55
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 890 SVPVKRHGRKTPTTGEAPRRRGKKQGSG-PSIPDGSAVFDAKLNQHSQNKSRD 941
SV VK K G+ +R +G P + D + D + N+ S+ D
Sbjct: 1514 SVKVKIKLSKRDERGQDKGKRRPSRGKAKPVVSDDDSDEDQEDNEQSEGSQSD 1566
Score = 38 (18.4 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1372 LLETPLDIKSIGGPIVSMKAADVADAD 1398
L+ P+D K I + S K V+D +
Sbjct: 1426 LIRKPVDFKKIKERVRSHKYRSVSDLE 1452
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 630 (226.8 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 154/391 (39%), Positives = 219/391 (56%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1083
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 1263
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1264 PDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1318
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEE 362
A E + + + R H +D Y ++ E+ T EE
Sbjct: 1319 ---AEVERLTCEEEEEKMFG------RGSRHRKEVD---YSDSLTEKQWLKAIEEGTLEE 1366
Query: 363 FEKMCQAESSDSPKLKEEGLEKSLPTVVSSS 393
E+ + + S + ++ S PT + S
Sbjct: 1367 IEEEVRQKKSSRKRKRDSDAGSSTPTTSTRS 1397
Score = 45 (20.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 568
GS+S S ++ GR + Q + RRR + P SDD +E+
Sbjct: 1552 GSESESRSVKVKIK-LGRKEKAQDRLKGSRRRPSRGSRAKPVVSDD---------DSEEE 1601
Query: 569 QSESLNPSGGE 579
Q E + SG E
Sbjct: 1602 QEEDRSGSGSE 1612
Score = 45 (20.9 bits), Expect = 3.3e-54, Sum P(3) = 3.3e-54
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G+ G + P V+++
Sbjct: 1541 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGS----RRRPSRGSRAKP-VVSD 1595
Query: 2234 DKTENEIEED 2243
D +E E EED
Sbjct: 1596 DDSEEEQEED 1605
Score = 43 (20.2 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1567 GRKEKAQDRLKGSRRRPSRGSRAKPVVSDDDSEEE-----QEEDRSG 1608
Score = 42 (19.8 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1531 IEKEDDSEGEESEEEEEGEEEGSESES 1557
Score = 40 (19.1 bits), Expect = 3.3e-54, Sum P(3) = 3.3e-54
Identities = 30/126 (23%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K + K + K GR P +K P PNL
Sbjct: 1381 KRDSDA-GSSTPTTSTRSRDKDDESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 1430
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 1431 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 1489
Query: 1156 ADLSSD 1161
DL D
Sbjct: 1490 NDLEKD 1495
Score = 39 (18.8 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 20/84 (23%), Positives = 32/84 (38%)
Query: 2105 SSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEA 2164
S + EE+ EG + SE S+ + L + + G + PV +
Sbjct: 1537 SEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGSRRRPSRGSRAKPVVSDD 1596
Query: 2165 DGPASFLAAEEEKNECSDKEPVGS 2188
D +EEE+ E D+ GS
Sbjct: 1597 D-------SEEEQEE--DRSGSGS 1611
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 629 (226.5 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 138/300 (46%), Positives = 189/300 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1083
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 1263
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1264 PDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1318
Score = 52 (23.4 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 342 YGRGKRAREVRSYEEQWTEEEFEKMCQA----ESSDSPKLKEEGLEKSLPTVVSSSAP 395
+GRG R R+ Y + TE+++ K + E + + K+ ++ + SS P
Sbjct: 1334 FGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTP 1391
Score = 48 (22.0 bits), Expect = 6.3e-54, Sum P(4) = 6.3e-54
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 801 IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+P + + VER+ + EEK S+ + + DS+TE
Sbjct: 1310 LPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE 1352
Score = 44 (20.5 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 568
GS+S S ++ GR + Q + RRR + P SDD +E+
Sbjct: 1551 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD---------DSEEE 1600
Query: 569 QSESLNPSGGE 579
Q E + SG E
Sbjct: 1601 QEEDRSGSGSE 1611
Score = 44 (20.5 bits), Expect = 3.1e-54, Sum P(4) = 3.1e-54
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 1540 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 1594
Query: 2234 DKTENEIEED 2243
D +E E EED
Sbjct: 1595 DDSEEEQEED 1604
Score = 42 (19.8 bits), Expect = 4.9e-55, Sum P(3) = 4.9e-55
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1530 IEKEDDSEGEESEEEEEGEEEGSESES 1556
Score = 42 (19.8 bits), Expect = 4.9e-55, Sum P(3) = 4.9e-55
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1566 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE-----QEEDRSG 1607
Score = 41 (19.5 bits), Expect = 6.3e-54, Sum P(4) = 6.3e-54
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK 1836
D +EK + +++ EG+ E + E Q S ++ D A +TP T +K
Sbjct: 1348 DSLTEKQWL--KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSEAGSSTPTTSTRSRDK 1400
Query: 1837 DPDS 1840
D +S
Sbjct: 1401 DEES 1404
Score = 40 (19.1 bits), Expect = 3.1e-54, Sum P(4) = 3.1e-54
Identities = 23/118 (19%), Positives = 43/118 (36%)
Query: 1006 AKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
++K+ D + S TPT T + E+ + + A + P + +
Sbjct: 1377 SRKRKRDSEAGSSTPTTSTRSR--DKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVD 1434
Query: 1066 ALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEK-HNEQSRNQNNPE 1122
A+ + ++ + P K LP L P F E+ N + R+ N+ E
Sbjct: 1435 AVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLE 1492
Score = 39 (18.8 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 321 VSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373
V +G K K + + RG RA+ V S ++ E+E ++ D
Sbjct: 1561 VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1613
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 629 (226.5 bits), Expect = 3.7e-55, Sum P(3) = 3.7e-55
Identities = 138/300 (46%), Positives = 189/300 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1020 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1075
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1076 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1135
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1136 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1195
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1196 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 1255
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1256 PDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1310
Score = 51 (23.0 bits), Expect = 3.7e-55, Sum P(3) = 3.7e-55
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 342 YGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
+GRG R R+ Y + TE+++ K E +++EE +K
Sbjct: 1326 FGRGSRHRKEVDYSDSLTEKQWLKAI--EEGTLEEIEEEVRQK 1366
Score = 48 (22.0 bits), Expect = 6.1e-54, Sum P(4) = 6.1e-54
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 801 IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+P + + VER+ + EEK S+ + + DS+TE
Sbjct: 1302 LPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE 1344
Score = 44 (20.5 bits), Expect = 3.7e-55, Sum P(3) = 3.7e-55
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 568
GS+S S ++ GR + Q + RRR + P SDD +E+
Sbjct: 1544 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD---------DSEEE 1593
Query: 569 QSESLNPSGGE 579
Q E + SG E
Sbjct: 1594 QEEDRSGSGSE 1604
Score = 44 (20.5 bits), Expect = 3.0e-54, Sum P(4) = 3.0e-54
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 1533 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 1587
Query: 2234 DKTENEIEED 2243
D +E E EED
Sbjct: 1588 DDSEEEQEED 1597
Score = 42 (19.8 bits), Expect = 6.0e-55, Sum P(3) = 6.0e-55
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1559 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE-----QEEDRSG 1600
Score = 42 (19.8 bits), Expect = 4.8e-54, Sum P(4) = 4.8e-54
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1523 IEKEDDSEGEESEEEEEGEEEGSESES 1549
Score = 41 (19.5 bits), Expect = 3.0e-54, Sum P(4) = 3.0e-54
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 905 EAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSR 940
++ R+R + +GPS P S K ++ + K R
Sbjct: 1367 KSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKR 1402
Score = 40 (19.1 bits), Expect = 7.7e-54, Sum P(4) = 7.7e-54
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK 1836
D +EK + +++ EG+ E + E Q S ++ D A +TP T +K
Sbjct: 1340 DSLTEKQWL--KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSDAGPSTPTTSTRSRDK 1392
Query: 1837 DPDS 1840
D +S
Sbjct: 1393 DDES 1396
Score = 39 (18.8 bits), Expect = 6.8e-55, Sum P(2) = 6.8e-55
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 321 VSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373
V +G K K + + RG RA+ V S ++ E+E ++ D
Sbjct: 1554 VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1606
Score = 39 (18.8 bits), Expect = 4.8e-54, Sum P(4) = 4.8e-54
Identities = 30/126 (23%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K + K + K GR P +K P PNL
Sbjct: 1373 KRDSDA-GPSTPTTSTRSRDKDDESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 1422
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 1423 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 1481
Query: 1156 ADLSSD 1161
DL D
Sbjct: 1482 NDLEKD 1487
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 629 (226.5 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 138/300 (46%), Positives = 189/300 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1083
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 1263
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1264 PDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1318
Score = 52 (23.4 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 342 YGRGKRAREVRSYEEQWTEEEFEKMCQA----ESSDSPKLKEEGLEKSLPTVVSSSAP 395
+GRG R R+ Y + TE+++ K + E + + K+ ++ + SS P
Sbjct: 1334 FGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTP 1391
Score = 48 (22.0 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 801 IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+P + + VER+ + EEK S+ + + DS+TE
Sbjct: 1310 LPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE 1352
Score = 43 (20.2 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1566 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSDEE-----QEEDRSG 1607
Score = 42 (19.8 bits), Expect = 4.9e-55, Sum P(3) = 4.9e-55
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1530 IEKEDDSEGEESEEEEEGEEEGSESES 1556
Score = 41 (19.5 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDD 554
GS+S S ++ GR + Q + RRR + P SDD
Sbjct: 1551 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1595
Score = 41 (19.5 bits), Expect = 6.3e-54, Sum P(4) = 6.3e-54
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 1540 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 1594
Query: 2234 DKTENEIEED 2243
D ++ E EED
Sbjct: 1595 DDSDEEQEED 1604
Score = 41 (19.5 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK 1836
D +EK + +++ EG+ E + E Q S ++ D A +TP T +K
Sbjct: 1348 DSLTEKQWL--KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSEAGSSTPTTSTRSRDK 1400
Query: 1837 DPDS 1840
D +S
Sbjct: 1401 DEES 1404
Score = 40 (19.1 bits), Expect = 6.3e-54, Sum P(4) = 6.3e-54
Identities = 23/118 (19%), Positives = 43/118 (36%)
Query: 1006 AKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
++K+ D + S TPT T + E+ + + A + P + +
Sbjct: 1377 SRKRKRDSEAGSSTPTTSTRSR--DKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVD 1434
Query: 1066 ALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEK-HNEQSRNQNNPE 1122
A+ + ++ + P K LP L P F E+ N + R+ N+ E
Sbjct: 1435 AVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLE 1492
Score = 38 (18.4 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 321 VSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373
V +G K K + + RG RA+ V S ++ E+E ++ D
Sbjct: 1561 VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSDEEQEEDRSGSGSEED 1613
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 629 (226.5 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 138/300 (46%), Positives = 189/300 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1083
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 1263
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1264 PDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1318
Score = 52 (23.4 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 342 YGRGKRAREVRSYEEQWTEEEFEKMCQA----ESSDSPKLKEEGLEKSLPTVVSSSAP 395
+GRG R R+ Y + TE+++ K + E + + K+ ++ + SS P
Sbjct: 1334 FGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTP 1391
Score = 48 (22.0 bits), Expect = 6.4e-54, Sum P(4) = 6.4e-54
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 801 IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+P + + VER+ + EEK S+ + + DS+TE
Sbjct: 1310 LPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE 1352
Score = 44 (20.5 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 25/119 (21%), Positives = 45/119 (37%)
Query: 1006 AKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
++K+ D + S TPT T + E+ + + A + P + +
Sbjct: 1377 SRKRKRDSEAGSSTPTTSTRSR--DKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVD 1434
Query: 1066 ALKPENKAQAGR-IENIANSSPDDKSLPMVPNLETAPPGFDIPIEK-HNEQSRNQNNPE 1122
A+ + +GR + + P K LP L P F E+ N + R+ N+ E
Sbjct: 1435 AVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLE 1493
Score = 43 (20.2 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1567 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSDEE-----QEEDRSG 1608
Score = 43 (20.2 bits), Expect = 3.1e-54, Sum P(4) = 3.1e-54
Identities = 31/126 (24%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K E K + K GR P +K P PNL
Sbjct: 1381 KRDSEA-GSSTPTTSTRSRDKDEESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 1430
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 1431 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 1489
Query: 1156 ADLSSD 1161
DL D
Sbjct: 1490 NDLEKD 1495
Score = 42 (19.8 bits), Expect = 4.9e-55, Sum P(3) = 4.9e-55
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1531 IEKEDDSEGEESEEEEEGEEEGSESES 1557
Score = 41 (19.5 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDD 554
GS+S S ++ GR + Q + RRR + P SDD
Sbjct: 1552 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1596
Score = 41 (19.5 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 1541 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 1595
Query: 2234 DKTENEIEED 2243
D ++ E EED
Sbjct: 1596 DDSDEEQEED 1605
Score = 41 (19.5 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK 1836
D +EK + +++ EG+ E + E Q S ++ D A +TP T +K
Sbjct: 1348 DSLTEKQWL--KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSEAGSSTPTTSTRSRDK 1400
Query: 1837 DPDS 1840
D +S
Sbjct: 1401 DEES 1404
Score = 38 (18.4 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 321 VSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373
V +G K K + + RG RA+ V S ++ E+E ++ D
Sbjct: 1562 VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSDEEQEEDRSGSGSEED 1614
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 622 (224.0 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 137/300 (45%), Positives = 187/300 (62%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1040 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGSDLYRASGKFE 1095
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1096 LLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFN 1155
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1156 DPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1215
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1216 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 1275
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
RSE E D F +D RR EE ++ R + D LP+ ++ DD
Sbjct: 1276 PDDETVNQMIARSEEEFDHFMRMDLDRRREEARNPKRRPRLMEED-----ELPTWIMKDD 1330
Score = 53 (23.7 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 342 YGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEE 380
+GRG R R+ Y + TE+++ K + + D +++EE
Sbjct: 1346 FGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLD--EIEEE 1382
Score = 51 (23.0 bits), Expect = 2.8e-54, Sum P(4) = 2.8e-54
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1213 EVFKPENKTDGDSVEKLEDTVDDHS 1237
++ K E +++GD E+ ED VD+ S
Sbjct: 1544 KIEKEEEESEGDDSEEEEDDVDEGS 1568
Score = 51 (23.0 bits), Expect = 2.8e-54, Sum P(4) = 2.8e-54
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 2174 EEEKNECSDKEPVGSSV---SQIESKEPEAKA-FEPMDVVDGAVALENTSEGMGGPSPPL 2229
EEE++E D E V S+ ES+ + K D + T P P
Sbjct: 1548 EEEESEGDDSEEEEDDVDEGSESESRSVKVKIKLSRKDKAERGKGRRRTGRS-SRPKP-- 1604
Query: 2230 VIAEDKTENEIEED 2243
V+++D +E + EE+
Sbjct: 1605 VVSDDDSEEDQEEE 1618
Score = 50 (22.7 bits), Expect = 2.8e-54, Sum P(4) = 2.8e-54
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 801 IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+P + + VER+ + EEK S+ + + DS+TE
Sbjct: 1322 LPTWIMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTE 1364
Score = 43 (20.2 bits), Expect = 2.8e-54, Sum P(4) = 2.8e-54
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 2086 AEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKE 2126
AE G R+T P+ S D EE E GSE++
Sbjct: 1587 AERGKGRRRTGRSSRPKPVVSDDDSEEDQEEEHSASGSEED 1627
Score = 42 (19.8 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 652 SRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGG 697
SRK ++ RRR R + P +SD +S+ + + E+++ G
Sbjct: 1582 SRKDKAERGKGRRRTGRSSRPKPVVSD----DDSEEDQEEEHSASG 1623
Score = 40 (19.1 bits), Expect = 2.8e-54, Sum P(4) = 2.8e-54
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 648 TKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPES 685
+ G+SR G ++RG+ PP +S P S
Sbjct: 1408 SSGRSRDKDDDGKKQKKRGR------PPAEKLSPNPPS 1439
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 625 (225.1 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 131/300 (43%), Positives = 192/300 (64%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL---PPIVRLCGKLEML 65
G G +++ N++++LR +CNHP++ Q E+ H + P + R+ GK E+L
Sbjct: 1044 GKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELL 1103
Query: 66 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 125
DR+LPKLKAT+HRVL F MT+ + ++EDYL ++Q+ YLRLDG T DRG L+ KFN +
Sbjct: 1104 DRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAK 1163
Query: 126 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 185
S F+FLLS RAGG+G+NLQ ADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1164 GSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLM 1223
Query: 186 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLREC--KKEEXXXXX 243
TV +VEE++ A+A +KL + + I AG FD ++ +R+++L+++L + ++EE
Sbjct: 1224 TVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVP 1283
Query: 244 XXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDD 303
RSE EI++F+ +D +R++E+ R L + E LP L DDD
Sbjct: 1284 DDEMINMMIARSEEEIEIFKRMDAERKKEDEEIHPGRER-LIDESE----LPDWLTKDDD 1338
Score = 47 (21.6 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 343 GRGKRAREVRSYEEQWTEEEFEK 365
GRG R R+ Y + TE+E+ K
Sbjct: 1354 GRGSRQRKEVDYTDSLTEKEWLK 1376
Score = 45 (20.9 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 510 SQSASACPSTPMQPKGR---GRRIQSGEQVPRRRGKKIGLVLPAASDDI 555
++S ++ P+TP Q G S +Q R+R +K + DD+
Sbjct: 1589 NKSLASAPATPTQSSSNVSSGAATTSKKQTRRKRSQKKYTISDDDDDDM 1637
Score = 40 (19.1 bits), Expect = 5.4e-53, Sum P(3) = 5.4e-53
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 812 VERVNIQSFEEKACTNASKSKATLPALDSITE 843
VER + Q E+ S+ + + DS+TE
Sbjct: 1340 VERFHYQYDEDTILGRGSRQRKEVDYTDSLTE 1371
Score = 39 (18.8 bits), Expect = 9.9e-54, Sum P(3) = 9.9e-54
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 1372 LLETPLDIKSIGGPIVSMKAADVADAD 1398
+++ P+DIK I I K AD+ + +
Sbjct: 1466 IIKRPVDIKKILQRIEDCKYADLNELE 1492
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 579 (208.9 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 131/298 (43%), Positives = 183/298 (61%)
Query: 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLI-PK-HYLPPIVRLCGKLEMLDRLLPKLKA 74
++ +N +M+L+ ICNHP++ EEV+ LI P I R+ GK E+LD++LPK KA
Sbjct: 1061 KNANNQIMQLKKICNHPFVY----EEVENLINPNIETNDQIWRVAGKFELLDKVLPKFKA 1116
Query: 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134
T H+VL F MT+++++MED+L F+ +Y+RLDG T DR L+ FN DS +F FLL
Sbjct: 1117 TGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLL 1176
Query: 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 194
S RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQK +V +LR T +VEE +
Sbjct: 1177 STRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMI 1236
Query: 195 RASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXXXXXR 254
A KL + + I AG FDN ++AE++ L +L+ K++E
Sbjct: 1237 LERAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIE--KEDERRQKGGTD-------E 1287
Query: 255 SESEIDVFE-SVDKQRREEEMATWRKLI--RGLGTDGEPLPPLPSRLVTDDDLKALYE 309
E ++D E + R E E+ +RK+ R L T P P SRL T+++L +Y+
Sbjct: 1288 EEEDLDDDELNQIIARNENELVVFRKMDEERYLATKNAPYP---SRLYTEEELPEIYK 1342
Score = 83 (34.3 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 293 PLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVR 352
P PSRL T+++L +Y+ + P K++ + ++ YGRG R R++
Sbjct: 1326 PYPSRLYTEEELPEIYK-----------IDPEELFKKED-----VASEEYGRGARERKIL 1369
Query: 353 SYEEQWTEEEFEKMCQAESSD 373
Y++ TEE++ K + SD
Sbjct: 1370 QYDDNLTEEQWLKKIEGMVSD 1390
Score = 51 (23.0 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 503 FVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDP 562
F+P P Q ++ T +GRGR G R RG+ G +L + + D
Sbjct: 1454 FIP--PKRQKSATPGGTTTSGRGRGRGRGRGRGRGRGRGR--GSLLSRYTPSVDPLTADE 1509
Query: 563 KTNEQPQSESL 573
++ Q Q E++
Sbjct: 1510 RSTLQNQIENI 1520
Score = 44 (20.5 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 360 EEEFEKMCQAESSDSPKLKEE---GLEKSLP 387
E + EK+ + E+ DSP L G E+S P
Sbjct: 1656 EAKLEKIDKGEAIDSPLLNASTTAGTEESTP 1686
Score = 40 (19.1 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 1821 PASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPP 1880
P+ L T EE E + DP+ F KE V A ++ G +++ +D T
Sbjct: 1328 PSRLYTEEELPEIYKIDPEELFK-----KEDV--ASEEYGRGARERKILQY--DDNLTEE 1378
Query: 1881 LSLANEEEMIEGFDND 1896
L E M+ D+D
Sbjct: 1379 QWLKKIEGMVSDDDDD 1394
Score = 39 (18.8 bits), Expect = 1.9e-52, Sum P(3) = 1.9e-52
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 1185 VEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEK-LEDTVDD 1235
V+ S +E++AK K + VA +E + + ++D SV++ + DD
Sbjct: 1402 VDMSDSEMEAKPKKPKGRRGRKPKVARVEDEESQTESDVISVKRQFPEDADD 1453
Score = 38 (18.4 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 649 KGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
+G+ R G R RG + +P + ++A S Q EN G
Sbjct: 1475 RGRGRGRGRGRGRGRGRGSLLSRYTPSVDPLTADERSTLQNQIENILG 1522
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 579 (208.9 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 131/298 (43%), Positives = 183/298 (61%)
Query: 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLI-PK-HYLPPIVRLCGKLEMLDRLLPKLKA 74
++ +N +M+L+ ICNHP++ EEV+ LI P I R+ GK E+LD++LPK KA
Sbjct: 1061 KNANNQIMQLKKICNHPFVY----EEVENLINPNIETNDQIWRVAGKFELLDKVLPKFKA 1116
Query: 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134
T H+VL F MT+++++MED+L F+ +Y+RLDG T DR L+ FN DS +F FLL
Sbjct: 1117 TGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLL 1176
Query: 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 194
S RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQK +V +LR T +VEE +
Sbjct: 1177 STRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMI 1236
Query: 195 RASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXXXXXR 254
A KL + + I AG FDN ++AE++ L +L+ K++E
Sbjct: 1237 LERAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIE--KEDERRQKGGTD-------E 1287
Query: 255 SESEIDVFE-SVDKQRREEEMATWRKLI--RGLGTDGEPLPPLPSRLVTDDDLKALYE 309
E ++D E + R E E+ +RK+ R L T P P SRL T+++L +Y+
Sbjct: 1288 EEEDLDDDELNQIIARNENELVVFRKMDEERYLATKNAPYP---SRLYTEEELPEIYK 1342
Score = 83 (34.3 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 293 PLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVR 352
P PSRL T+++L +Y+ + P K++ + ++ YGRG R R++
Sbjct: 1326 PYPSRLYTEEELPEIYK-----------IDPEELFKKED-----VASEEYGRGARERKIL 1369
Query: 353 SYEEQWTEEEFEKMCQAESSD 373
Y++ TEE++ K + SD
Sbjct: 1370 QYDDNLTEEQWLKKIEGMVSD 1390
Score = 51 (23.0 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 503 FVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDP 562
F+P P Q ++ T +GRGR G R RG+ G +L + + D
Sbjct: 1454 FIP--PKRQKSATPGGTTTSGRGRGRGRGRGRGRGRGRGR--GSLLSRYTPSVDPLTADE 1509
Query: 563 KTNEQPQSESL 573
++ Q Q E++
Sbjct: 1510 RSTLQNQIENI 1520
Score = 44 (20.5 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 360 EEEFEKMCQAESSDSPKLKEE---GLEKSLP 387
E + EK+ + E+ DSP L G E+S P
Sbjct: 1656 EAKLEKIDKGEAIDSPLLNASTTAGTEESTP 1686
Score = 40 (19.1 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 1821 PASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPP 1880
P+ L T EE E + DP+ F KE V A ++ G +++ +D T
Sbjct: 1328 PSRLYTEEELPEIYKIDPEELFK-----KEDV--ASEEYGRGARERKILQY--DDNLTEE 1378
Query: 1881 LSLANEEEMIEGFDND 1896
L E M+ D+D
Sbjct: 1379 QWLKKIEGMVSDDDDD 1394
Score = 39 (18.8 bits), Expect = 1.9e-52, Sum P(3) = 1.9e-52
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 1185 VEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEK-LEDTVDD 1235
V+ S +E++AK K + VA +E + + ++D SV++ + DD
Sbjct: 1402 VDMSDSEMEAKPKKPKGRRGRKPKVARVEDEESQTESDVISVKRQFPEDADD 1453
Score = 38 (18.4 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 649 KGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
+G+ R G R RG + +P + ++A S Q EN G
Sbjct: 1475 RGRGRGRGRGRGRGRGRGSLLSRYTPSVDPLTADERSTLQNQIENILG 1522
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 608 (219.1 bits), Expect = 4.0e-53, Sum P(3) = 4.0e-53
Identities = 121/264 (45%), Positives = 176/264 (66%)
Query: 13 NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL--PPIVRLCGKLEMLDRLLP 70
+S RS+ N+V+ LR +CNHP+L + + + ++R+ GKLE+LDR+LP
Sbjct: 801 SSGARSLMNTVVHLRKLCNHPFLFPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILP 860
Query: 71 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 130
KLKAT HR+L F MT ++++ ED+L F++Y YLRLDG T +RG L+ +FN +S F
Sbjct: 861 KLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNSDLF 920
Query: 131 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190
+F+LS RAGG+G+NLQ ADTVIIFD+DWNP D+QAQ RAHRIGQK++V VLR T +V
Sbjct: 921 LFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSV 980
Query: 191 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXX 249
EE++ A+A +KL V + I AG FD ++ +R++ LE +++ + ++EE
Sbjct: 981 EEKILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQIIQADGEEEEEEEVPDDETVN 1040
Query: 250 XXXXRSESEIDVFESVDKQRREEE 273
RSE E ++F+S+D RR EE
Sbjct: 1041 QMVARSEEEFNIFQSMDIDRRREE 1064
Score = 52 (23.4 bits), Expect = 4.0e-53, Sum P(3) = 4.0e-53
Identities = 35/122 (28%), Positives = 50/122 (40%)
Query: 2076 PDAEANNIIDA---EGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSK--PVGSEKESIAS 2130
P A+A A + GGN Q L L S + ++ + +K P EK+ +S
Sbjct: 1346 PPAQAQQFQQALMTQTGGN------QALMLQYMQSAMLAQRAQASTKVTPKKDEKKETSS 1399
Query: 2131 AVPLDESKGPDAEVSSQTAIEGGGVVSIPVP----EEADGPASFLAAEEEKNECSDKEPV 2186
+V +E+K D E S+ +A S P P E D EEE+ KEP
Sbjct: 1400 SVKTEEAKKDD-EPSTSSA-------SAPPPKKKKESEDSEDPMEEDEEEEIIGQKKEPA 1451
Query: 2187 GS 2188
S
Sbjct: 1452 SS 1453
Score = 46 (21.3 bits), Expect = 4.5e-52, Sum P(3) = 4.5e-52
Identities = 24/142 (16%), Positives = 50/142 (35%)
Query: 556 PSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSS 615
P P +P ++P + S + S ST+ +VS + + + ++ P+
Sbjct: 1291 PKPVEEPVKKKEPSTPSTS-SSRPSTSGTPSVSDLQRTQQATAQQMLMLMTHMQSLPPAQ 1349
Query: 616 AVA---ALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALG 672
A AL ++ N A TK +K + + + +
Sbjct: 1350 AQQFQQALMTQTGGNQALMLQYMQSAMLAQRAQASTKVTPKKDEKKETSSSVKTEEAKKD 1409
Query: 673 SPPISDVSAGPESKSNLQSENN 694
P + ++ P K +SE++
Sbjct: 1410 DEPSTSSASAPPPKKKKESEDS 1431
Score = 43 (20.2 bits), Expect = 4.0e-53, Sum P(3) = 4.0e-53
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 739 KPAEQSVRVVQSNQPINLPATHDSSSQPSGS-TPA 772
KP E+ V+ +P + P+T SSS+PS S TP+
Sbjct: 1292 KPVEEPVK---KKEP-STPST--SSSRPSTSGTPS 1320
Score = 43 (20.2 bits), Expect = 9.2e-52, Sum P(3) = 9.2e-52
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 1086 PDDKSLPMVPNLETAPPGFD-IPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQE 1144
P K P P+ ++ P P ++++ ++ T + S PA + F+Q
Sbjct: 1297 PVKKKEPSTPSTSSSRPSTSGTPSVSDLQRTQQATAQQMLMLMTHMQSLPPAQAQQFQQA 1356
Query: 1145 KVTNT 1149
+T T
Sbjct: 1357 LMTQT 1361
Score = 40 (19.1 bits), Expect = 8.3e-53, Sum P(3) = 8.3e-53
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 358 WTEEEFEKMCQAESSDSPKLKEEGLEKSLPTV--VSSSAPAVYST 400
W +E+++K + PK EE ++K P+ SSS P+ T
Sbjct: 1280 W-KEQYDKFM-----NPPKPVEEPVKKKEPSTPSTSSSRPSTSGT 1318
Score = 39 (18.8 bits), Expect = 4.5e-52, Sum P(3) = 4.5e-52
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 1822 ASLATPEEKTEGSEKDPDSSFAAQEDPKESVV 1853
AS P++K E SE DS +ED +E ++
Sbjct: 1417 ASAPPPKKKKE-SE---DSEDPMEEDEEEEII 1444
Score = 38 (18.4 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 1686 DHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDP 1728
D + S V E +K +E S S+ ++K + +DP
Sbjct: 1392 DEKKETSSSVKTEEAKKDDEPSTSSASAPPPKKKKESEDSEDP 1434
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 577 (208.2 bits), Expect = 5.9e-53, Sum P(2) = 5.9e-53
Identities = 124/278 (44%), Positives = 174/278 (62%)
Query: 11 IGNSKG--RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP--IVRLCGKLEMLD 66
+G +K + ++N +M+LR ICNHP++ EEV++++ L I R+ GK E+LD
Sbjct: 771 VGGAKSGIKGLNNKIMQLRKICNHPFVF----EEVESVLNSSRLTNDLIWRVSGKFELLD 826
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPK K + HRVL F MT+++D+MED+L +K +YLRLDG T +R ++ FN D
Sbjct: 827 RVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFNAPD 886
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +F FLLS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQK +V +LR T
Sbjct: 887 SDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLIT 946
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKK---EEXXXXX 243
+VEE + A KL + + I AG FDN ++AE++ +L+ LL E
Sbjct: 947 NDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAEEQEAFLKRLLEADANGADNEENDSL 1006
Query: 244 XXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLI 281
RSE E +F S+D++R+ E++ +LI
Sbjct: 1007 DDDELNEILARSEEEKVLFASMDEERKSEKVPYKSRLI 1044
Score = 491 (177.9 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 114/270 (42%), Positives = 158/270 (58%)
Query: 41 EEVDTLIPKHYLPP--IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 98
EEV++++ L I R+ GK E+LDR+LPK K + HRVL F MT+++D+MED+L +
Sbjct: 799 EEVESVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRW 858
Query: 99 KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW 158
K +YLRLDG T +R ++ FN DS +F FLLS RAGG+G+NLQ ADTVIIFDTDW
Sbjct: 859 KDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDW 918
Query: 159 NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 218
NP DLQAQ RAHRIGQK +V +LR T +VEE + A KL + + I AG FDN +
Sbjct: 919 NPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKS 978
Query: 219 SAEDRREYLESLLRECKKEEXXXXXXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWR 278
+AE++ +L+ LL + E++ + R EEE +
Sbjct: 979 TAEEQEAFLKRLLE--------ADANGADNEENDSLDDDELNEILA----RSEEEKVLFA 1026
Query: 279 KLIRGLGTDGEPLPPLPSRLVTDDDLKALY 308
+ E +P SRL+ D+L A++
Sbjct: 1027 SMDEE--RKSEKVP-YKSRLIEKDELPAVF 1053
Score = 70 (29.7 bits), Expect = 5.9e-53, Sum P(2) = 5.9e-53
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 1631 EKDDISSEHAFGSSLVLQDKASEAEIGDRID-EPQVDGFSPRSMSGVVDE---LVDEAGD 1686
+ DDI+ + G A E ++ D D EP+ DGF+ + +S V+DE L DE
Sbjct: 1162 DNDDINGDSGNGGG----GAAIELDVDDDDDNEPETDGFTSKCLS-VIDEITALTDETDG 1216
Query: 1687 H 1687
H
Sbjct: 1217 H 1217
Score = 51 (23.0 bits), Expect = 5.8e-51, Sum P(2) = 5.8e-51
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 1618 GVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVV 1677
G++ + K + +GE+DD E A + + + + + ID ++G S G
Sbjct: 1122 GLLEEDIKDDEVGEEDDEDFEEA--AQPRKRQRRARTPL-PHIDNDDINGDSGNGGGGAA 1178
Query: 1678 DEL-VDEAGDH 1687
EL VD+ D+
Sbjct: 1179 IELDVDDDDDN 1189
Score = 47 (21.6 bits), Expect = 1.5e-50, Sum P(2) = 1.5e-50
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 1885 NEEEMIEGFDNDPTGISMAVMDSKECAAEAADQMCVSEGCVVVTEKLSED 1934
+EE+ ++ D+D + A+ +E A+ + EG ++ E + +D
Sbjct: 1084 SEEQWLKAMDDDNDTVEEAIKRKEERIAKRKRNKAIREG--LLEEDIKDD 1131
Score = 38 (18.4 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 1281 GPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGN 1323
G ++ + DD D+ ET + ++ E + ++ +TD N
Sbjct: 1176 GAAIELDVDDDDDNEPETDGFTSKCLSVIDEITALTDETDGHN 1218
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 606 (218.4 bits), Expect = 6.0e-53, Sum P(2) = 6.0e-53
Identities = 137/300 (45%), Positives = 188/300 (62%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1020 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1075
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1076 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLT-FN 1134
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FI LLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1135 EPGSEYFI-LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1193
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXX 242
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1194 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEV 1253
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1254 PDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1308
Score = 316 (116.3 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 94/278 (33%), Positives = 144/278 (51%)
Query: 130 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189
+ LLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +
Sbjct: 1140 YFILLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1199
Query: 190 VEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXXXXXXX 249
VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1200 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE----------- 1248
Query: 250 XXXXRSESEIDVFESVDKQ--RREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKAL 307
E E+ E+V++ R EEE + ++ + P RL+ +D+L
Sbjct: 1249 -----EEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDEL--- 1300
Query: 308 YEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSY-----EEQW---- 358
P + + V+R + + +GRG R R+ Y E+QW
Sbjct: 1301 ---------PSWIIKDDAEVERLT--CEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAI 1349
Query: 359 ---TEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSS 393
T EE E+ + + S + ++ S PT + S
Sbjct: 1350 EEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTSTRS 1387
Score = 48 (22.0 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 801 IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+P + + VER+ + EEK S+ + + DS+TE
Sbjct: 1300 LPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE 1342
Score = 44 (20.5 bits), Expect = 6.0e-53, Sum P(2) = 6.0e-53
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 568
GS+S S ++ GR + Q + RRR + P SDD +E+
Sbjct: 1542 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD---------DSEEE 1591
Query: 569 QSESLNPSGGE 579
Q E + SG E
Sbjct: 1592 QEEDRSGSGSE 1602
Score = 44 (20.5 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 1531 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 1585
Query: 2234 DKTENEIEED 2243
D +E E EED
Sbjct: 1586 DDSEEEQEED 1595
Score = 42 (19.8 bits), Expect = 9.7e-53, Sum P(2) = 9.7e-53
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1557 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE-----QEEDRSG 1598
Score = 42 (19.8 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1521 IEKEDDSEGEESEEEEEGEEEGSESES 1547
Score = 41 (19.5 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 905 EAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSR 940
++ R+R + +GPS P S K ++ + K R
Sbjct: 1365 KSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKR 1400
Score = 40 (19.1 bits), Expect = 2.4e-51, Sum P(4) = 2.4e-51
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK 1836
D +EK + +++ EG+ E + E Q S ++ D A +TP T +K
Sbjct: 1338 DSLTEKQWL--KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSDAGPSTPTTSTRSRDK 1390
Query: 1837 DPDS 1840
D +S
Sbjct: 1391 DDES 1394
Score = 39 (18.8 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 321 VSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373
V +G K K + + RG RA+ V S ++ E+E ++ D
Sbjct: 1552 VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1604
Score = 39 (18.8 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 30/126 (23%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K + K + K GR P +K P PNL
Sbjct: 1371 KRDSDA-GPSTPTTSTRSRDKDDESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 1420
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 1421 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 1479
Query: 1156 ADLSSD 1161
DL D
Sbjct: 1480 NDLEKD 1485
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 582 (209.9 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 130/306 (42%), Positives = 190/306 (62%)
Query: 9 GSIGNSKG--RSVHNSVMELRNICNHPYLSQLHAEEVDTLI-PKHYLPPIV-RLCGKLEM 64
G+ G +KG + ++N +M+LR ICNHP++ +EV+ ++ P ++ R+ GK E+
Sbjct: 740 GTEGATKGGIKGLNNKIMQLRKICNHPFVF----DEVEGVVNPSRGNSDLLFRVAGKFEL 795
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
LDR+LPK KA+ HRVL F MT+++D+MED+L K +Y+RLDG T +R +++ FN
Sbjct: 796 LDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNA 855
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
DS +F FLLS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQK +V +LR
Sbjct: 856 PDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRL 915
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXX 243
T +VEE + A KL + + I AG FDN ++AE++ +L L+ E +++
Sbjct: 916 ITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIESETNRDDDDKAE 975
Query: 244 XXXXXXXXX-XRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
RS E +F+ +DK+R +E A + +GL +PP P RL+ D
Sbjct: 976 LDDDELNDTLARSADEKILFDKIDKERMNQERADAKA--QGLR-----VPP-P-RLIQLD 1026
Query: 303 DLKALY 308
+L ++
Sbjct: 1027 ELPKVF 1032
Score = 63 (27.2 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 28/123 (22%), Positives = 49/123 (39%)
Query: 902 TTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVND 961
TT +RR ++ SI + K N ++ S+++ G+K + K + ++ +
Sbjct: 1139 TTASRSKRRSSRKKRTISI----VTAEDKENTQEESTSQENGGAK-VEEEVKSSSVEIIN 1193
Query: 962 VARVMKEIFSETCSSKA-KTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTP 1020
+ K+ T K KT N+GK AKK + K+ + P
Sbjct: 1194 GSESKKKKPKLTVKIKLNKTTVLENNDGKRAEEKPESKSPAKKTAAKKTKTKSKSLGIFP 1253
Query: 1021 TVE 1023
TVE
Sbjct: 1254 TVE 1256
Score = 48 (22.0 bits), Expect = 5.1e-50, Sum P(3) = 5.1e-50
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1102 PGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTS 1150
P + I K N+ + +NN + EE P S++PA A ++ K + S
Sbjct: 1202 PKLTVKI-KLNKTTVLENNDGKRAEEKP-ESKSPAKKTAAKKTKTKSKS 1248
Score = 46 (21.3 bits), Expect = 6.9e-51, Sum P(2) = 6.9e-51
Identities = 23/106 (21%), Positives = 39/106 (36%)
Query: 2104 LSSSDVEEEKIEGFSK-PVGSEKESIAS---AVPLDESKGPDAEVSSQTAIEGGG----V 2155
L + +E +IE P SE I + +DE D E ++ +
Sbjct: 1095 LRQNGTKENEIETLENTPEASETSLIENNSFTAAVDEETNADKETTASRSKRRSSRKKRT 1154
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAK 2201
+SI E+ + ++E ++E SSV I E + K
Sbjct: 1155 ISIVTAEDKENTQEESTSQENGGAKVEEEVKSSSVEIINGSESKKK 1200
Score = 43 (20.2 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 1109 EKHNEQSRNQNNPEVKGEETPVSS--EAPASTEAFEQE-------KVTNTSSFVNLADLS 1159
E E+S +Q N K EE SS E +E+ +++ K+ T+ N
Sbjct: 1164 ENTQEESTSQENGGAKVEEEVKSSSVEIINGSESKKKKPKLTVKIKLNKTTVLENNDGKR 1223
Query: 1160 SDDKTCSVTPAMETA 1174
+++K S +PA +TA
Sbjct: 1224 AEEKPESKSPAKKTA 1238
Score = 42 (19.8 bits), Expect = 5.1e-50, Sum P(3) = 5.1e-50
Identities = 15/82 (18%), Positives = 32/82 (39%)
Query: 663 RRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQ-ELSNKIQ 721
RRR ++ I + PE+ ENNS + + + K+ S+ + + +
Sbjct: 1092 RRRLRQNGTKENEIETLENTPEASETSLIENNSFTAAVDEETNADKETTASRSKRRSSRK 1151
Query: 722 VQPCGVATSADVAGPDQKPAEQ 743
+ + T+ D ++ Q
Sbjct: 1152 KRTISIVTAEDKENTQEESTSQ 1173
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 590 (212.7 bits), Expect = 1.6e-52, Sum P(2) = 1.6e-52
Identities = 143/388 (36%), Positives = 217/388 (55%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 361 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 416
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 417 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 476
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 477 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 536
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXX 243
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 537 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCS 596
Query: 244 XXXXXXXXXXRSESEIDVFESVDKQ--RREEEMATWRKLIRGLGTDGEPLP-----PLPS 296
+ V +++ + E+E+ + + + E L
Sbjct: 597 TGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 656
Query: 297 RLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEE 356
R + K M+ + P + + V+R + + +GRG R R+ Y +
Sbjct: 657 RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLT--CEEEEEKMFGRGSRHRKEVDYSD 714
Query: 357 QWTEEEFEKMCQAESSDSPKLKEEGLEK 384
TE+++ K E +++EE +K
Sbjct: 715 SLTEKQWLKAI--EEGTLEEIEEEVRQK 740
Score = 44 (20.5 bits), Expect = 1.6e-52, Sum P(2) = 1.6e-52
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 568
GS+S S ++ GR + Q + RRR + P SDD +E+
Sbjct: 918 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD---------DSEEE 967
Query: 569 QSESLNPSGGE 579
Q E + SG E
Sbjct: 968 QEEDRSGSGSE 978
Score = 44 (20.5 bits), Expect = 8.1e-52, Sum P(3) = 8.1e-52
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 907 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 961
Query: 2234 DKTENEIEED 2243
D +E E EED
Sbjct: 962 DDSEEEQEED 971
Score = 42 (19.8 bits), Expect = 2.6e-52, Sum P(2) = 2.6e-52
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 933 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE-----QEEDRSG 974
Score = 42 (19.8 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 897 IEKEDDSEGEESEEEEEGEEEGSESES 923
Score = 41 (19.5 bits), Expect = 8.1e-52, Sum P(3) = 8.1e-52
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 905 EAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSR 940
++ R+R + +GPS P S K ++ + K R
Sbjct: 741 KSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKR 776
Score = 40 (19.1 bits), Expect = 1.0e-51, Sum P(3) = 1.0e-51
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK 1836
D +EK + +++ EG+ E + E Q S ++ D A +TP T +K
Sbjct: 714 DSLTEKQWL--KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSDAGPSTPTTSTRSRDK 766
Query: 1837 DPDS 1840
D +S
Sbjct: 767 DDES 770
Score = 39 (18.8 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 30/126 (23%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K + K + K GR P +K P PNL
Sbjct: 747 KRDSDA-GPSTPTTSTRSRDKDDESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 796
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 797 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 855
Query: 1156 ADLSSD 1161
DL D
Sbjct: 856 NDLEKD 861
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 598 (215.6 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 124/272 (45%), Positives = 176/272 (64%)
Query: 9 GSIGNSK-GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 67
G+ GN K + + N+ ++LR ICNHPYL + +E + I + ++R GK ++LDR
Sbjct: 1982 GADGNPKLAKGLKNTYVQLRKICNHPYL--FYDDEYN--IDDN----LIRYAGKFDLLDR 2033
Query: 68 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127
LLPKLKA HRVL FS MT+L++++E + +K Y++LRLDG T +RG L++ FN +S
Sbjct: 2034 LLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFNAPNS 2093
Query: 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187
+FIF+LS RAGG+G+NLQ ADTVIIFD+DWNPQ+DLQAQ RAHRIGQK+ V VLR T
Sbjct: 2094 EYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVLRLVTA 2153
Query: 188 QTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR--ECKKEEXXXXXXX 245
+VEE + A A K + + I AG F+N ++ DR++ LE L+ E + E
Sbjct: 2154 HSVEESILARANFKKELDKKIIQAGQFNNKSNRSDRKKMLEDLMTQDETAEMEKQTVPTD 2213
Query: 246 XXXXXXXXRSESEIDVFESVDKQRREEEMATW 277
RS E +++E++DK+R E + W
Sbjct: 2214 SQINEMIARSPEEFELYENMDKERMEIDQKKW 2245
Score = 65 (27.9 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 24/76 (31%), Positives = 33/76 (43%)
Query: 540 RGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPV-PDS 598
R KK V AAS P K E+ + + N GG D + +S P+ P+ P S
Sbjct: 2454 RSKKRAKV--AASK---KPSASSKKQEKEKKANSNGGGGGGGGGDDSSNSNPSTPLTPSS 2508
Query: 599 VSPSAVKGQSGTIDPS 614
S S++ Q PS
Sbjct: 2509 SSSSSITAQPPLPSPS 2524
Score = 65 (27.9 bits), Expect = 1.0e-51, Sum P(3) = 1.0e-51
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 2107 SDVEEEKIEGFSKPVGSEKES--IASAVPLDESKGPDAEVSSQTAIEGGG 2154
+D E+E+ E F +PV S+K + AS P SK + E + + GGG
Sbjct: 2439 ADEEDEEDEDFQRPVRSKKRAKVAASKKPSASSKKQEKEKKANSNGGGGG 2488
Score = 54 (24.1 bits), Expect = 6.9e-51, Sum P(3) = 6.9e-51
Identities = 35/136 (25%), Positives = 56/136 (41%)
Query: 661 TPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKI 720
TP R KR+ L S SD + ++ + E + R +S K A S++ S
Sbjct: 2415 TPSRTNKRKELESN-YSD-EEDDDDDADEEDEEDEDFQRPVRSKKRAKV-AASKKPSASS 2471
Query: 721 QVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSS---QPSGSTPAQVPSM 777
+ Q +++ G + S S P+ P++ SSS QP +P+ V
Sbjct: 2472 KKQEKEKKANSNGGGGGGGGGDDSSNSNPST-PLT-PSSSSSSSITAQPPLPSPSPVKKA 2529
Query: 778 DLGNVASDTKEVLSEN 793
G A K+ +SEN
Sbjct: 2530 GRGRPAGTMKKKISEN 2545
Score = 52 (23.4 bits), Expect = 5.4e-51, Sum P(3) = 5.4e-51
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 496 SSQPTTAFVPVAPGSQSASACPS----TPMQPKGRGR 528
+S P+T P + S S +A P +P++ GRGR
Sbjct: 2497 NSNPSTPLTPSSSSSSSITAQPPLPSPSPVKKAGRGR 2533
Score = 49 (22.3 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 677 SDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGP 736
++++ S +NL + NN GG R +LS L+N + P + P
Sbjct: 3071 NNINNNNNSNTNLNNINNGGGKRYDPM-------SLSN-LTNDDEPNPQPTFVTRPQQQP 3122
Query: 737 DQKPAEQSVRVVQSNQP 753
Q+ +Q + Q QP
Sbjct: 3123 QQQQPQQQQQPQQQQQP 3139
Score = 49 (22.3 bits), Expect = 1.1e-50, Sum P(3) = 1.1e-50
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 559 GPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTI 611
G D +N P S L PS S++ +++ P P P V + +GT+
Sbjct: 2491 GGDDSSNSNP-STPLTPSSSSSSS----ITAQPPLPSPSPVKKAGRGRPAGTM 2538
Score = 46 (21.3 bits), Expect = 4.9e-52, Sum P(3) = 4.9e-52
Identities = 22/115 (19%), Positives = 42/115 (36%)
Query: 1008 KQSSDDKTCSVTPTVETPPPGFN--SPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
K +S D++ S T T+E P SP + P + + + + +
Sbjct: 2692 KSNSADQS-STTSTIEQSQPTITQQSPQQQPQQQPQPQQQQQQQQQQQQQQQQK-PQQQQ 2749
Query: 1066 ALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNN 1120
A++ N + ++ + S N +PP + ++N S N NN
Sbjct: 2750 AIQSPNVDKNNSTTTTTSTKLLNNSKGNHNNNSLSPPASPCNLSQNNNISNNNNN 2804
Score = 43 (20.2 bits), Expect = 1.0e-51, Sum P(3) = 1.0e-51
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 1884 ANEEEMI-EGFDNDPTGISMAVMDS 1907
AN MI E FD+D G S + DS
Sbjct: 2316 ANNNAMISEFFDDDDDGSSSSSSDS 2340
Score = 42 (19.8 bits), Expect = 2.9e-50, Sum P(3) = 2.9e-50
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 552 SDDIPSPGPDPKTNEQPQSESLNP 575
+DD P+P P T Q Q + P
Sbjct: 3104 NDDEPNPQPTFVTRPQQQPQQQQP 3127
Score = 42 (19.8 bits), Expect = 6.0e-50, Sum P(3) = 6.0e-50
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 509 GSQSASACPSTPMQPKGRGRR-IQSGEQVPRRRG-KKIGLVLPAAS 552
G S+++ PSTP+ P I + +P KK G PA +
Sbjct: 2492 GDDSSNSNPSTPLTPSSSSSSSITAQPPLPSPSPVKKAGRGRPAGT 2537
Score = 40 (19.1 bits), Expect = 2.1e-51, Sum P(3) = 2.1e-51
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKES 1851
++ + S D DS F ++ PK +
Sbjct: 2330 DDGSSSSSSDSDSDFESKPTPKRT 2353
Score = 40 (19.1 bits), Expect = 2.0e-49, Sum P(3) = 2.0e-49
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 660 VTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGG 697
V ++R K A P S E K+N GG
Sbjct: 2453 VRSKKRAKVAASKKPSASSKKQEKEKKANSNGGGGGGG 2490
Score = 40 (19.1 bits), Expect = 1.4e-48, Sum P(3) = 1.4e-48
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1255 GNVPGNTSEDSSKMPLETPLIMKSTEGPSVS 1285
G G +DSS TPL S+ S++
Sbjct: 2485 GGGGGGGGDDSSNSNPSTPLTPSSSSSSSIT 2515
Score = 39 (18.8 bits), Expect = 2.6e-51, Sum P(3) = 2.6e-51
Identities = 39/167 (23%), Positives = 66/167 (39%)
Query: 1187 QSGTEI--DAKVKWKN--TPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKEL 1242
QSG+E+ DA V +N T L + + ++ KPE S+ + TV D +VK+
Sbjct: 2627 QSGSEVFEDA-VYLQNLFTELFNK-LFPNNQLPKPEPPLSPTSLAIQQATVKDQ-IVKDQ 2683
Query: 1243 I----HR----SPDHSDM---VIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDV 1291
+ H+ S D S + + P T + + P + P + + +
Sbjct: 2684 LDISEHQDKSNSADQSSTTSTIEQSQPTITQQSPQQQPQQQPQPQQQQQQQQQQQQQQQQ 2743
Query: 1292 ADHSRETPILSGSPINSGTECSTVSVK---TDVGNHPQNVEPTSASP 1335
++ I S + + + +T S K GNH N ASP
Sbjct: 2744 KPQQQQA-IQSPNVDKNNSTTTTTSTKLLNNSKGNHNNNSLSPPASP 2789
Score = 38 (18.4 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1501 LDKTEIATSCDTASLDDSHDNGNVEVL 1527
LD + + + + +D +DN NV V+
Sbjct: 2386 LDDDDDDNNSNNNNNNDDYDNNNVSVV 2412
Score = 38 (18.4 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 1112 NEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTS 1150
N + N NN + V + P+ T +E +N S
Sbjct: 2393 NNSNNNNNNDDYDNNNVSVVATTPSRTNK-RKELESNYS 2430
Score = 37 (18.1 bits), Expect = 4.3e-51, Sum P(3) = 4.3e-51
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 1511 DTASLDDSHDNGN 1523
DT LDD D+ N
Sbjct: 2382 DTNGLDDDDDDNN 2394
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 596 (214.9 bits), Expect = 7.9e-52, Sum P(2) = 7.9e-52
Identities = 144/390 (36%), Positives = 219/390 (56%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 827 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 882
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 883 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 942
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 943 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1002
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXX 243
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1003 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCS 1062
Query: 244 XXXXXXXXXXRSESEIDVFESVDKQ--RREEEMATWRKLIRGLGTDGEPLP-----PLPS 296
+ V +++ + E+E+ + + + E L
Sbjct: 1063 TGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1122
Query: 297 RLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEE 356
R + K M+ + P + + V+R + + +GRG R R+ Y +
Sbjct: 1123 RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLT--CEEEEEKMFGRGSRHRKEVDYSD 1180
Query: 357 QWTEEEFEKMCQA--ESSDSPKLKEEGLEK 384
TE+++ K +A E +++EE +K
Sbjct: 1181 SLTEKQWLKQLKAAIEEGTLEEIEEEVRQK 1210
Score = 39 (18.8 bits), Expect = 7.9e-52, Sum P(2) = 7.9e-52
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 1789 SVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDS 1840
++ EG+ E + E Q S ++ D A +TP T +KD +S
Sbjct: 1194 AIEEGTLEEIEEEVRQKKSSRKRKR-----DSEAGSSTPTTSTRSRDKDEES 1240
Score = 37 (18.1 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPD 1087
K D+ G TP + K E K + K E ++ + P+
Sbjct: 1217 KRDSEA-GSSTPTTSTRSRDKDEESKKQKKRGRPPAEKLSPNPPN 1260
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 590 (212.7 bits), Expect = 3.5e-51, Sum P(2) = 3.5e-51
Identities = 143/388 (36%), Positives = 217/388 (55%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1083
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXX 243
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCS 1263
Query: 244 XXXXXXXXXXRSESEIDVFESVDKQ--RREEEMATWRKLIRGLGTDGEPLP-----PLPS 296
+ V +++ + E+E+ + + + E L
Sbjct: 1264 TGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1323
Query: 297 RLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEE 356
R + K M+ + P + + V+R + + +GRG R R+ Y +
Sbjct: 1324 RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLT--CEEEEEKMFGRGSRHRKEVDYSD 1381
Query: 357 QWTEEEFEKMCQAESSDSPKLKEEGLEK 384
TE+++ K E +++EE +K
Sbjct: 1382 SLTEKQWLKAI--EEGTLEEIEEEVRQK 1407
Score = 44 (20.5 bits), Expect = 3.5e-51, Sum P(2) = 3.5e-51
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 568
GS+S S ++ GR + Q + RRR + P SDD +E+
Sbjct: 1585 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD---------DSEEE 1634
Query: 569 QSESLNPSGGE 579
Q E + SG E
Sbjct: 1635 QEEDRSGSGSE 1645
Score = 44 (20.5 bits), Expect = 7.9e-50, Sum P(3) = 7.9e-50
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 1574 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 1628
Query: 2234 DKTENEIEED 2243
D +E E EED
Sbjct: 1629 DDSEEEQEED 1638
Score = 42 (19.8 bits), Expect = 5.7e-51, Sum P(2) = 5.7e-51
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1564 IEKEDDSEGEESEEEEEGEEEGSESES 1590
Score = 42 (19.8 bits), Expect = 5.7e-51, Sum P(2) = 5.7e-51
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1600 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE-----QEEDRSG 1641
Score = 41 (19.5 bits), Expect = 7.9e-50, Sum P(3) = 7.9e-50
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK 1836
D +EK + +++ EG+ E + E Q S ++ D A +TP T +K
Sbjct: 1381 DSLTEKQWL--KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSDAGSSTPTTSTRSRDK 1433
Query: 1837 DPDS 1840
D +S
Sbjct: 1434 DDES 1437
Score = 40 (19.1 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 30/126 (23%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K + K + K GR P +K P PNL
Sbjct: 1414 KRDSDA-GSSTPTTSTRSRDKDDESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 1463
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 1464 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 1522
Query: 1156 ADLSSD 1161
DL D
Sbjct: 1523 NDLEKD 1528
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 590 (212.7 bits), Expect = 3.4e-50, Sum P(3) = 3.4e-50
Identities = 142/388 (36%), Positives = 217/388 (55%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLE 63
G +++ N++M+LR ICNHPY+ Q H EE +H + IV R GK E
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFE 1083
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXX 243
TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L +++E
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCS 1263
Query: 244 XXXXXXXXXXRSESEIDVFESVDKQ--RREEEMATWRKLIRGLGTDGEPLP-----PLPS 296
+ V +++ + E+E+ + + + E L
Sbjct: 1264 TGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1323
Query: 297 RLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEE 356
R + K M+ + P + + V+R + + +GRG R R+ Y +
Sbjct: 1324 RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLT--CEEEEEKMFGRGSRHRKEVDYSD 1381
Query: 357 QWTEEEF-EKMCQAESSDSPKLKEEGLE 383
TE+++ +K+ + D+ GL+
Sbjct: 1382 SLTEKQWLKKITGKDIHDTASSVARGLQ 1409
Score = 45 (20.9 bits), Expect = 3.4e-50, Sum P(3) = 3.4e-50
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 1786 SSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDS 1840
+S+++ EG+ E + E Q S ++ D A +TP T +KD +S
Sbjct: 1420 ASKAIEEGTLEEIEEEVRQKKSSRKRKR-----DSDAGSSTPTTSTRSRDKDDES 1469
Score = 44 (20.5 bits), Expect = 3.4e-50, Sum P(3) = 3.4e-50
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E E+ E ++E S ++ K + + D + G G + P V+++
Sbjct: 1606 ESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGG----RRRPSRGSRAKP-VVSD 1660
Query: 2234 DKTENEIEED 2243
D +E E EED
Sbjct: 1661 DDSEEEQEED 1670
Score = 44 (20.5 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 568
GS+S S ++ GR + Q + RRR + P SDD +E+
Sbjct: 1617 GSESESRSVKVKIK-LGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD---------DSEEE 1666
Query: 569 QSESLNPSGGE 579
Q E + SG E
Sbjct: 1667 QEEDRSGSGSE 1677
Score = 42 (19.8 bits), Expect = 1.8e-49, Sum P(3) = 1.8e-49
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEA 1134
IEK ++ ++ E +GEE SE+
Sbjct: 1596 IEKEDDSEGEESEEEEEGEEEGSESES 1622
Score = 42 (19.8 bits), Expect = 1.8e-49, Sum P(3) = 1.8e-49
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
G+ K Q RRR R + P +SD + E Q E+ SG
Sbjct: 1632 GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE-----QEEDRSG 1673
Score = 40 (19.1 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 356 EQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSS 393
E+ T EE E+ + + S + ++ S PT + S
Sbjct: 1425 EEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRS 1462
Score = 40 (19.1 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 30/126 (23%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K + K + K GR P +K P PNL
Sbjct: 1446 KRDSDA-GSSTPTTSTRSRDKDDESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 1495
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 1496 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 1554
Query: 1156 ADLSSD 1161
DL D
Sbjct: 1555 NDLEKD 1560
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 575 (207.5 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 134/322 (41%), Positives = 189/322 (58%)
Query: 8 LGSIGNSK--G-RSVHNSVMELRNICNHPYLSQLHAEEVDTLIP-KHYLPPIVRLCGKLE 63
+G N K G R +N +M+L+ ICNHP++ + E D + P + I R+ GK E
Sbjct: 1034 IGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFE---EVEDQINPTRETNDDIWRVAGKFE 1090
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDR+LPKLKAT HRVL F MT+++D+MED+L + +YLRLDGHT +R L+ FN
Sbjct: 1091 LLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFN 1150
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
DS + F+LS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQK +V +LR
Sbjct: 1151 APDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 1210
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL-----RECKKE- 237
T +VEE + A KL + + I AG FDN +++E++ L SLL R K+E
Sbjct: 1211 LITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRES 1270
Query: 238 --EXXXXXXXXXXXXXXXRSESEIDVFESVDKQR--REEEMATWRKLIRGLGTDGEPLPP 293
E R++ E+ V +D+ R +EEE+ +L+ + LP
Sbjct: 1271 GVEEEEELKDSEINEILARNDEEMAVLTRMDEDRSKKEEELGVKSRLL-----EKSELPD 1325
Query: 294 LPSRLVTDDDLKALYEAMKIYD 315
+ SR + + + E+ +Y+
Sbjct: 1326 IYSRDIGAELKREESESAAVYN 1347
Score = 62 (26.9 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 36/186 (19%), Positives = 73/186 (39%)
Query: 936 QNKSRDSFGSKTISLRSKQETADV--NDVARVMKEIFSETCS---------SKAKTGDSS 984
++K + G K+ L K E D+ D+ +K SE+ + K T + +
Sbjct: 1304 RSKKEEELGVKS-RLLEKSELPDIYSRDIGAELKREESESAAVYNGRGARERKTATYNDN 1362
Query: 985 LNEGKDXXXXXXXXXXXXXEVAKKQSS--DDKTCSVTPTVETPPPGFNSPNENPGELTGT 1042
++E + + A+KQ + +DK+ ++ E ++ N+ P +
Sbjct: 1363 MSEEQWLRQFEVSDDEKNDKQARKQRTKKEDKSEAIDGNGEIKGENIDADNDGP-RINNI 1421
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDD-KSLPMVPNLETAP 1101
+ D L+ K +A +P + + ++E NS P +S P+ + +
Sbjct: 1422 SAEDRADTDLAMNDDDFLSKKRKAGRPRGRPKKVKLEGSENSEPPALESSPVTGDNSPSE 1481
Query: 1102 PGFDIP 1107
DIP
Sbjct: 1482 DFMDIP 1487
Score = 46 (21.3 bits), Expect = 6.3e-48, Sum P(3) = 6.3e-48
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 2170 FLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPL 2229
F +++EKN DK+ + Q KE +++A + +G + EN GP
Sbjct: 1372 FEVSDDEKN---DKQ----ARKQRTKKEDKSEAIDG----NGEIKGENIDADNDGPRINN 1420
Query: 2230 VIAEDKTENEI 2240
+ AED+ + ++
Sbjct: 1421 ISAEDRADTDL 1431
Score = 41 (19.5 bits), Expect = 3.9e-46, Sum P(4) = 3.9e-46
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 493 IAPSSQPTTAFVPVA-PGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGK 542
+ + P+ F+ + P + ++ S +GRGR G R RG+
Sbjct: 1473 VTGDNSPSEDFMDIPKPRTAGKTSVKSARTSTRGRGRGRGRGRGRGRGRGR 1523
Score = 41 (19.5 bits), Expect = 3.9e-46, Sum P(4) = 3.9e-46
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 1109 EKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSS 1160
+K ++ N E+KGE ++ P +++ +T +N D S
Sbjct: 1390 KKEDKSEAIDGNGEIKGENIDADNDGPRINNISAEDRA-DTDLAMNDDDFLS 1440
Score = 38 (18.4 bits), Expect = 4.3e-47, Sum P(3) = 4.3e-47
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 1989 ETVQEEEKTELSCEKQPI-GSSVDDESKGPEVEPCVQMDVRGD 2030
+ ++E+K+E I G ++D ++ GP + + + R D
Sbjct: 1387 QRTKKEDKSEAIDGNGEIKGENIDADNDGPRINN-ISAEDRAD 1428
Score = 38 (18.4 bits), Expect = 3.9e-46, Sum P(4) = 3.9e-46
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 376 KLKEEGLEKSLPTVVSSS 393
K+K EG E S P + SS
Sbjct: 1454 KVKLEGSENSEPPALESS 1471
Score = 38 (18.4 bits), Expect = 3.9e-46, Sum P(4) = 3.9e-46
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 1771 PWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDI 1807
P + K++GS +P + +S + +E D MDI
Sbjct: 1452 PKKVKLEGSENSEPPALESSPVTGDNSPSE--DFMDI 1486
Score = 37 (18.1 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 5 EENLGSIGNSKGRSVHNS 22
+EN S+ + SVHN+
Sbjct: 351 DENFASVSPAGPSSVHNA 368
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 563 (203.2 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 131/307 (42%), Positives = 185/307 (60%)
Query: 12 GNSKG-RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLP 70
G G R + N +M+LR +CNHP++ + ++V+ + L I R GK E+LDR+LP
Sbjct: 809 GGKVGMRGLSNMLMQLRKLCNHPFVFEQVEDQVNPGRGTNDL--IWRTAGKFELLDRILP 866
Query: 71 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 130
K KAT HRVL F MT+++++MED+L + +YLRLDG T DR L+ FN DS +F
Sbjct: 867 KFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYF 926
Query: 131 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190
FLLS RAGG+G+NLQ ADTVIIFD+DWNP DLQAQ RAHRIGQK +V +LR T +V
Sbjct: 927 CFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSNSV 986
Query: 191 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXX 250
EE++ A+ KL + + I AG FDN ++ E+R L +LL + +
Sbjct: 987 EEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLETAEGTDQAGDQDEMDDDD 1046
Query: 251 XX---XRSESEIDVFESVDKQRREE-EMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKA 306
RS+ E+ VF+ +D++R++ KL R +G + E LP VT+++ A
Sbjct: 1047 LNNIMARSDEELAVFQRMDRERQKTCPYGPGHKLPRLMG-ESE----LPEIYVTEENPVA 1101
Query: 307 LYEAMKI 313
EA +I
Sbjct: 1102 -EEAAEI 1107
Score = 59 (25.8 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 336 ALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESS---DSPKLKEEGLEK 384
A + + GRG R R++ Y++ TEE++ A+ D+ KE +EK
Sbjct: 1104 AAEIELSGRGARERKITRYDDGLTEEQWLMAVDADDDTIEDAIARKEARVEK 1155
Score = 47 (21.6 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 535 QVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSG 577
+V +RR K A D+ SP P +T+E PQ + G
Sbjct: 1152 RVEKRRSNKEKRGRKAQGDE-SSPEPSRETSETPQPKKRGRRG 1193
Score = 43 (20.2 bits), Expect = 4.2e-49, Sum P(3) = 4.2e-49
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 519 TPMQPKGRGRRIQSGEQVPRRRGKKIGLVLP 549
TP QPK RGRR G P+R+ +++ P
Sbjct: 1183 TP-QPKKRGRR---GP-APKRKAEELAEETP 1208
Score = 38 (18.4 bits), Expect = 1.4e-48, Sum P(3) = 1.4e-48
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 1830 KTEGSEKDPDSSFAAQEDPK 1849
K +G E P+ S E P+
Sbjct: 1166 KAQGDESSPEPSRETSETPQ 1185
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 553 (199.7 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 121/289 (41%), Positives = 177/289 (61%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI-PKHYLPPIV-RLCGKLEMLD 66
G G + + + N+VM+L+ ICNHP++ E+V+ I P ++ R GK E+LD
Sbjct: 1138 GEKGKTGIKGLQNTVMQLKKICNHPFIF----EDVERAIDPSGTNVDLLWRAAGKFELLD 1193
Query: 67 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 126
R+LPKL T H+ L F MT+++ +MEDYL K ++YLRLDG T DR +L+ +FN
Sbjct: 1194 RILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPK 1253
Query: 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186
S +IF+LS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQ ++V +LR T
Sbjct: 1254 SDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLIT 1313
Query: 187 VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXXXX 246
+++EE + + A++KL + + I AG FDN ++ E+R +L SLL ++
Sbjct: 1314 EKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGEL 1373
Query: 247 XXXXXX---XRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLP 292
R++ E+ +F+ +DK+R ++ K + L T E LP
Sbjct: 1374 QDDELNELISRTDEELVLFKKLDKERAATDIYGKGKPLERLLTVNE-LP 1421
Score = 52 (23.4 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 1692 HSPVHVVERE--KSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGD 1744
++ +H E E E+ L L ++ E +D + D ++ EDS S +
Sbjct: 1626 NNSLHAYEEEALNEEQASLVFLENSEAELPLDSGIVSAEDDKVITYEDSSSSYSE 1680
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 542 (195.9 bits), Expect = 5.6e-46, Sum P(2) = 5.6e-46
Identities = 108/228 (47%), Positives = 154/228 (67%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV-RLCGKLEMLDRLLP 70
G + + + N+VM+L+ ICNHP++ + +D P + ++ R+ GK E+LDR+LP
Sbjct: 690 GKTGIKGLQNTVMQLKKICNHPFVFEDVERSID---PTGFNYDMLWRVSGKFELLDRILP 746
Query: 71 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 130
KL + HR+L F MT+++++MEDYL ++Q+RYLRLDG T DR L+ FN +
Sbjct: 747 KLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVN 806
Query: 131 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190
+FLLS RAGG+G+NLQ ADTVIIFD+DWNP DLQAQ RAHRIGQ ++V + R T ++V
Sbjct: 807 LFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSV 866
Query: 191 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 238
EE + A A++KL + + I AG FDN ++ E+R +L SLL EE
Sbjct: 867 EENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEE 914
Score = 38 (18.4 bits), Expect = 5.6e-46, Sum P(2) = 5.6e-46
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 337 LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSP 375
L + GRG R R Y+E + ++ ES P
Sbjct: 985 LQEEPLGRGARRRTPVVYDEAVRDAQWMAEMDMESEARP 1023
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 519 (187.8 bits), Expect = 3.0e-45, Sum P(4) = 3.0e-45
Identities = 127/378 (33%), Positives = 207/378 (54%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G G K + +N V +L+ ICNHPYL + +E D I + ++R GK + +D++
Sbjct: 896 GRSGRLKMKGFNNIVKQLQKICNHPYLFK---DEWD--INED----LIRTSGKFDTMDQI 946
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L K+ A+ HRVL F+ MT ++++ME+Y + K++ +LRLDG T +R L+ ++N+ DSP
Sbjct: 947 LTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSP 1006
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F+IF+LS AGG+G+NLQ ADTVIIFD+DWNPQ+DLQAQ R HRIGQ V V R +
Sbjct: 1007 FWIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISAN 1066
Query: 189 TVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXX-XXXXX 247
++EE++ A KL + + I AG F+ +++ ++RR LE L
Sbjct: 1067 SIEEKILGRATDKLEIDAKIIQAGMFNTHSNDQERRAKLEQFLHGFPNNTLDEVPVDLKE 1126
Query: 248 XXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKAL 307
R + E F+ +DK+R + + A +K +P+ P RL+ + +L
Sbjct: 1127 INKLIARDDFEFKQFQEMDKERLKVDQANSKKT-------RQPIKP---RLMIEKELPEW 1176
Query: 308 YEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMC 367
A P T ++ K++ + + ++ + + R E+ T E+++
Sbjct: 1177 VLA-----TPVTDKDEDIAGKKRSTAIASANSFVHDNLTDNQYARMIEKNMTFEQYKAHL 1231
Query: 368 QAESSDSPKLKEEGLEKS 385
+A+ + K K++G EKS
Sbjct: 1232 EAKKLKNGKSKKDG-EKS 1248
Score = 70 (29.7 bits), Expect = 3.0e-45, Sum P(4) = 3.0e-45
Identities = 32/121 (26%), Positives = 52/121 (42%)
Query: 1218 ENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL---ETPL 1274
EN +D ++ + + VDDH I S ++++ N GN+++ + ETP
Sbjct: 1340 ENNSDNENQDDIIQ-VDDHPT--NGIENSSNNNNNDDNNSNGNSNQQQQQQQSNNGETPT 1396
Query: 1275 IMKSTEG-PSVS-------MKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQ 1326
K G P +S K DD+ S ++P S + S TE S D G++
Sbjct: 1397 PAKKGRGRPRLSNNPTPIKRKLDDLKGKSDDSPKPSKKSLMSETETSDNEQSMDSGDNSN 1456
Query: 1327 N 1327
N
Sbjct: 1457 N 1457
Score = 57 (25.1 bits), Expect = 3.0e-45, Sum P(4) = 3.0e-45
Identities = 21/79 (26%), Positives = 30/79 (37%)
Query: 1785 VSSQSVLEG-SKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFA 1843
V+S + G S T + G + I PE + D EK +G+EKD D +
Sbjct: 1496 VASTAATNGTSVHTPGKRGRKKKIRPNPEDEEKDKDKENENENENEKEKGNEKDKDPTST 1555
Query: 1844 AQEDPKESVVEAGDQMGVS 1862
+ AG G S
Sbjct: 1556 TSPTTTTTSTSAGTSSGSS 1574
Score = 51 (23.0 bits), Expect = 8.1e-44, Sum P(3) = 8.1e-44
Identities = 24/126 (19%), Positives = 46/126 (36%)
Query: 1028 GFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPD 1087
G NS N N + N+ + + +++ S+ N A + +P
Sbjct: 1452 GDNSNNNNNNNNSNNNNNNNEKNNNSNGEPSENGSQENVNGNGNVASTAATNGTSVHTPG 1511
Query: 1088 DKSLP--MVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
+ + PN E D E NE + + N + ++ P S+ +P +T
Sbjct: 1512 KRGRKKKIRPNPEDEEKDKDKENENENENEKEKGNEK---DKDPTSTTSPTTTTTSTSAG 1568
Query: 1146 VTNTSS 1151
++ SS
Sbjct: 1569 TSSGSS 1574
Score = 50 (22.7 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 561 DPKTNEQPQSESLNPSGGESTATDGNVSSIPTAP 594
DP + P + + + S G S+ + +V + P +P
Sbjct: 1551 DPTSTTSPTTTTTSTSAGTSSGSSSSVLNTPLSP 1584
Score = 49 (22.3 bits), Expect = 1.9e-44, Sum P(3) = 1.9e-44
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 904 GEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETAD 958
GE P K +G P + + KL+ + KS DS SL S+ ET+D
Sbjct: 1392 GETPTPAKKGRGR-PRLSNNPTPIKRKLDD-LKGKSDDSPKPSKKSLMSETETSD 1444
Score = 44 (20.5 bits), Expect = 6.5e-44, Sum P(4) = 6.5e-44
Identities = 22/106 (20%), Positives = 38/106 (35%)
Query: 2135 DESKGPDAEVSSQTAIEGGGVV---------SIPVPEEADGPASFLAAEEEKNECSDKEP 2185
+ S G +E SQ + G G V S+ P + E++ + DKE
Sbjct: 1475 NNSNGEPSENGSQENVNGNGNVASTAATNGTSVHTPGKRGRKKKIRPNPEDEEKDKDKE- 1533
Query: 2186 VGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVI 2231
+ ++ E ++ K +P +TS G S V+
Sbjct: 1534 -NENENENEKEKGNEKDKDPTSTTSPTTTTTSTSAGTSSGSSSSVL 1578
Score = 42 (19.8 bits), Expect = 2.2e-43, Sum P(2) = 2.2e-43
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 496 SSQPTTAFVPVAPGSQSASACP--STPMQPK 524
++ PTT + G+ S S+ +TP+ P+
Sbjct: 1555 TTSPTTTTTSTSAGTSSGSSSSVLNTPLSPE 1585
Score = 39 (18.8 bits), Expect = 4.4e-43, Sum P(2) = 4.4e-43
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 899 KTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSR 940
K PT+ +P +G S S+V + L+ S +R
Sbjct: 1550 KDPTSTTSPTTTTTSTSAGTSSGSSSSVLNTPLSPESPFTTR 1591
Score = 38 (18.4 bits), Expect = 5.7e-43, Sum P(2) = 5.7e-43
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 902 TTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSK 946
T+ P +RG+K+ P+ D D K N++ ++ K
Sbjct: 1505 TSVHTPGKRGRKKKIRPNPEDEEKDKD-KENENENENEKEKGNEK 1548
Score = 37 (18.1 bits), Expect = 3.0e-45, Sum P(4) = 3.0e-45
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 1070 ENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFD---IPIEKHNEQSRNQNNPEVKGE 1126
++K + G+ N S D+ S + E D I +N + N+NN E
Sbjct: 1247 KSKKKKGKSRGRKNKSDDEDSSDDELDDEGISSDDDDNNINNNNNNNDNNNKNNNNNDDE 1306
Query: 1127 ET 1128
ET
Sbjct: 1307 ET 1308
>UNIPROTKB|H0YGM3 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 EMBL:AC011442
EMBL:AC011485 EMBL:AC006127 HGNC:HGNC:11100 ChiTaRS:SMARCA4
PRIDE:H0YGM3 Ensembl:ENST00000538456 Bgee:H0YGM3 Uniprot:H0YGM3
Length = 427
Score = 441 (160.3 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 96/203 (47%), Positives = 129/203 (63%)
Query: 101 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNP 160
++YLRLDG T DRG L+ FN+ S +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP
Sbjct: 1 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNP 60
Query: 161 QVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSA 220
DLQAQ RAHRIGQ+ +V VLR TV +VEE++ A+A++KL V + I AG FD +S+
Sbjct: 61 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSS 120
Query: 221 EDRREYLESLLR-ECKKEEXXXXXXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRK 279
+RR +L+++L E + EE R E E D+F +D RR EE ++
Sbjct: 121 HERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKR 180
Query: 280 LIRGLGTDGEPLPPLPSRLVTDD 302
R + D LPS ++ DD
Sbjct: 181 KPRLMEED-----ELPSWIIKDD 198
Score = 51 (23.0 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 342 YGRGKRAREVRSYEEQWTEEEF-EKMCQAESSDSPKLKEEGLE 383
+GRG R R+ Y + TE+++ +K+ + D+ GL+
Sbjct: 214 FGRGSRHRKEVDYSDSLTEKQWLKKITGKDIHDTASSVARGLQ 256
Score = 48 (22.0 bits), Expect = 4.6e-43, Sum P(3) = 4.6e-43
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 801 IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+P + + VER+ + EEK S+ + + DS+TE
Sbjct: 190 LPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE 232
Score = 42 (19.8 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 347 RAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSS 393
RA + E+ T EE E+ + + S + ++ S PT + S
Sbjct: 266 RASKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRS 312
Score = 40 (19.1 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 30/126 (23%), Positives = 46/126 (36%)
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
K D+ G TP + K + K + K GR P +K P PNL
Sbjct: 296 KRDSDA-GSSTPTTSTRSRDKDDESKKQKKR--GR-------PPAEKLSPNPPNLTKKMK 345
Query: 1103 GFDIPIEKHNEQSRNQNNPEV-----KGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNL 1155
+ K+ + S + EV +E P E F++ E++ N + +L
Sbjct: 346 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 404
Query: 1156 ADLSSD 1161
DL D
Sbjct: 405 NDLEKD 410
Score = 40 (19.1 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 1788 QSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDS 1840
+++ EG+ E + E Q S ++ D A +TP T +KD +S
Sbjct: 272 KAIEEGTLEEIEEEVRQKKSSRKRKR-----DSDAGSSTPTTSTRSRDKDDES 319
Score = 39 (18.8 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 526 RGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTAT 583
RG + Q G Q R K + + ++I K++ + + +S G ST T
Sbjct: 253 RGLQFQRGLQFCTRASKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDS---DAGSSTPT 307
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 469 (170.2 bits), Expect = 8.8e-43, Sum P(5) = 8.8e-43
Identities = 105/233 (45%), Positives = 144/233 (61%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVRLCGKLE 63
G + ++ N++MELR CNHPYL E++ +T P L +++ GKL
Sbjct: 1233 GQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLV 1292
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 1293 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1352
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V + R
Sbjct: 1353 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYR 1412
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 233
T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1413 LITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1465
Score = 103 (41.3 bits), Expect = 8.8e-43, Sum P(5) = 8.8e-43
Identities = 55/178 (30%), Positives = 73/178 (41%)
Query: 2077 DAEANNIIDAEGGGNMRQTVPQDLGL---P--LSSSDVEEEKIEGFSKPVGSEKESIASA 2131
DA N G GNM P +G P LSS+ V+EEK G S+ G E S+A+
Sbjct: 2125 DAH-KNFAQNRGAGNMSSLGPLAVGFGQTPAILSSAHVQEEKATGQSEGKGEESGSVATQ 2183
Query: 2132 VPLDESKGPDAEV------SSQTA-IEGGGVVSIPVPEE--AD-GPASFL--AAEEEKNE 2179
E K D EV S Q E G V S E AD GP S +EE++ E
Sbjct: 2184 EKT-EGKEDDEEVDGGEKDSKQGCEAEAGSVRSELKGMEVTADTGPKSISEKGSEEDEEE 2242
Query: 2180 CSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGM----GGPSPPLVIAE 2233
+ + SQ+E K F+ + A + T +G G PS ++ E
Sbjct: 2243 KLEDDDKSEESSQLEGAVSRGKNFDEESNASMSTARDETRDGFYMEDGDPSVAQLLHE 2300
Score = 67 (28.6 bits), Expect = 8.8e-43, Sum P(5) = 8.8e-43
Identities = 23/81 (28%), Positives = 34/81 (41%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEP 2021
V + D+K AE +L GG E +E+E E + P +D+ + P +
Sbjct: 1820 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSPPEDK 1878
Query: 2022 CVQMDVRGDGIVPETVPEELG 2042
MD+R G P ELG
Sbjct: 1879 EEAMDIRTTG-KPSESTAELG 1898
Score = 63 (27.2 bits), Expect = 3.3e-38, Sum P(5) = 3.3e-38
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 1823 SLATPEEKTEGSEKDPDSSFAAQEDPKESV-VEAGDQMGVSLGGATVMEKSSEDLATPPL 1881
S+AT +EKTEG E D + ++D K+ EAG L G V + +
Sbjct: 2179 SVAT-QEKTEGKEDDEEVD-GGEKDSKQGCEAEAGSVRS-ELKGMEVTADTGPKSISEKG 2235
Query: 1882 SLANEEEMIEGFD 1894
S +EEE +E D
Sbjct: 2236 SEEDEEEKLEDDD 2248
Score = 62 (26.9 bits), Expect = 3.3e-38, Sum P(5) = 3.3e-38
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 2161 PEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALEN 2217
P++A+G A F EEE E SD E ++ E E E +D +DG LEN
Sbjct: 2936 PDKAEGGA-F--QEEENLEGSDAEENLDKTAESSIFEDEMAQGEELDSLDGGDELEN 2989
Score = 58 (25.5 bits), Expect = 1.1e-37, Sum P(5) = 1.1e-37
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 1983 GGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEP-CVQMDVRGDGIVPETVPEEL 2041
G G + +V +EKTE + + + D +G E E V+ +++G + +T P+ +
Sbjct: 2172 GKGEESGSVATQEKTEGKEDDEEVDGGEKDSKQGCEAEAGSVRSELKGMEVTADTGPKSI 2231
Score = 57 (25.1 bits), Expect = 9.0e-37, Sum P(5) = 9.0e-37
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
A AG Q + EK P+ + EE EGS+ + + A+ E + G++
Sbjct: 2920 ALAGLQNAVGSGEEKAPDKAE--GGAFQEEENLEGSDAEENLDKTAESSIFEDEMAQGEE 2977
Query: 1859 MGVSLGGATVMEKSSED 1875
+ SL G +E + D
Sbjct: 2978 LD-SLDGGDELENNEND 2993
Score = 55 (24.4 bits), Expect = 3.3e-38, Sum P(5) = 3.3e-38
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 330 KGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPT 388
KGE G++ TQ GK E E E++ ++ C+AE+ S + + +G+E + T
Sbjct: 2173 KGEESGSVATQEKTEGKEDDE----EVDGGEKDSKQGCEAEAG-SVRSELKGMEVTADT 2226
Score = 50 (22.7 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 32/146 (21%), Positives = 57/146 (39%)
Query: 2071 GESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEE------KIEGFSKPVGSE 2124
G+S+G E+ ++ E D G S E E +++G +
Sbjct: 2168 GQSEGKGEESGSVATQEKTEGKEDDEEVDGGEKDSKQGCEAEAGSVRSELKGMEVTADTG 2227
Query: 2125 KESIAS-AVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDK 2183
+SI+ DE + + + S+ + + G VS + + AS A +E +
Sbjct: 2228 PKSISEKGSEEDEEEKLEDDDKSEESSQLEGAVSRGKNFDEESNASMSTARDETRDGFYM 2287
Query: 2184 EPVGSSVSQIESKEPEAKAFEPMDVV 2209
E SV+Q+ + A +F P D V
Sbjct: 2288 EDGDPSVAQLLHERTFAFSFWPKDRV 2313
Score = 49 (22.3 bits), Expect = 9.0e-37, Sum P(5) = 9.0e-37
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 1764 QPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETV-AEAG----DQMDISIMPEKLPEHL 1818
+ S S+A E K +G + + V + SK+ AEAG + + + + P+ +
Sbjct: 2175 EESGSVATQE-KTEGKEDDEEVDGGE--KDSKQGCEAEAGSVRSELKGMEVTADTGPKSI 2231
Query: 1819 DIPASLATPEEKTEGSEKDPDSS 1841
S EEK E +K +SS
Sbjct: 2232 SEKGSEEDEEEKLEDDDKSEESS 2254
Score = 48 (22.0 bits), Expect = 3.3e-38, Sum P(5) = 3.3e-38
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 1128 TPVSSEAPASTEAFEQEKVTNTSSFVNLADLS-SDDKTCSVTPAMETAPGFDIPIEKGVE 1186
TP + ++P +F + S V A +S S+D T S + E A +P ++
Sbjct: 2348 TPPTMDSPLQKRSFAE------LSMVGQASISGSEDLTTSPQLSKEDALNLSVPRQRRRR 2401
Query: 1187 QSGTEIDAK 1195
+ EI+A+
Sbjct: 2402 RRKIEIEAE 2410
Score = 48 (22.0 bits), Expect = 3.3e-38, Sum P(5) = 3.3e-38
Identities = 19/68 (27%), Positives = 25/68 (36%)
Query: 1818 LDIPASLATPEEKTEGSEKDPDSSFA-AQEDPKESVVEAGD-QMGVSLGGATVMEKSSED 1875
L+ P S A T + DPD + +E E+ E D + AT S
Sbjct: 2813 LNSPLSAAAGNATTASGQGDPDDGTSKGEEKGNENEEENKDSEKSTDAVSATDSANGSVG 2872
Query: 1876 LATPPLSL 1883
AT P L
Sbjct: 2873 AATAPAGL 2880
Score = 47 (21.6 bits), Expect = 8.8e-43, Sum P(5) = 8.8e-43
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ K+ L GAD+ E V +PE
Sbjct: 1748 RQEVIGDQADKI--LEGADSSEADVWIPE 1774
Score = 45 (20.9 bits), Expect = 2.3e-36, Sum P(5) = 2.3e-36
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 1965 EDSK-GFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPE 2018
+DSK G EAEA L+G V A+T + + S E + ++D+ K E
Sbjct: 2200 KDSKQGCEAEAGSVRSELKGMEVTADTGPKSISEKGSEEDEE--EKLEDDDKSEE 2252
Score = 45 (20.9 bits), Expect = 3.2e-36, Sum P(6) = 3.2e-36
Identities = 19/79 (24%), Positives = 35/79 (44%)
Query: 256 ESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYD 315
+ E+D E KQ E E + R ++G+ + P S +++D E K+ D
Sbjct: 2192 DEEVDGGEKDSKQGCEAEAGSVRSELKGMEVTADTGPKSISEKGSEED-----EEEKLED 2246
Query: 316 APKTGVSPNV-GVKRKGEH 333
K+ S + G +G++
Sbjct: 2247 DDKSEESSQLEGAVSRGKN 2265
Score = 44 (20.5 bits), Expect = 7.4e-41, Sum P(4) = 7.4e-41
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 1068 KPENKAQAGRIENIANSSPDDKSLPM 1093
KP I+ ANS P+DK M
Sbjct: 1857 KPTRTPFKDEIDEFANSPPEDKEEAM 1882
Score = 44 (20.5 bits), Expect = 3.1e-37, Sum P(6) = 3.1e-37
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 572 SLNPSGGEST-ATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNL 628
SL+ E T A + ++ + PT +P SP G +DP + + +N E T L
Sbjct: 2531 SLSAEDAEVTKAFEEDIETPPTRNIP---SP-------GQLDPDTRIPVINLEDGTRL 2578
Score = 43 (20.2 bits), Expect = 1.1e-37, Sum P(5) = 1.1e-37
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 1810 MPEKLPEHLDIP-ASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATV 1868
MP +P++ D+ +S P++K ++P+ +E V + G +GGA
Sbjct: 2603 MPSYVPKNADVLFSSFQKPKQKRHRC-RNPNKLDINTLTGEERVPVVNKRNGKKMGGA-- 2659
Query: 1869 MEKSSEDL 1876
M +DL
Sbjct: 2660 MAPPMKDL 2667
Score = 43 (20.2 bits), Expect = 3.1e-37, Sum P(6) = 3.1e-37
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 664 RRGKR--QALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQ 721
RRG+R + + +A + L + G+ L+ ++ Q+ S +L+ +
Sbjct: 2714 RRGRRPKSEIARAAAAAAAASTSGINPLLVNSLFAGMDLTSLQNL--QNLQSLQLAGLMG 2771
Query: 722 VQPCGVATSADVAGPDQKPA 741
P G+AT+A G + PA
Sbjct: 2772 FPP-GLATAAAAGGDTKNPA 2790
Score = 42 (19.8 bits), Expect = 5.0e-37, Sum P(6) = 5.0e-37
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 534 EQVP---RRRGKKIGLVLPAASDDIP 556
E+VP +R GKK+G + D+P
Sbjct: 2643 ERVPVVNKRNGKKMGGAMAPPMKDLP 2668
Score = 42 (19.8 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 553 DDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSA 603
DD S G + + +++ S +ATD S+ A P + PS+
Sbjct: 2834 DDGTSKGEEKGNENEEENKDSEKSTDAVSATDSANGSVGAATAPAGL-PSS 2883
Score = 41 (19.5 bits), Expect = 8.8e-43, Sum P(5) = 8.8e-43
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQ 368
YG G R ++ S Y+ Q TE++ E +C+
Sbjct: 1615 YGWG-RWTDILSHGRYKRQLTEQDVETICR 1643
Score = 40 (19.1 bits), Expect = 3.2e-36, Sum P(6) = 3.2e-36
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 977 KAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPTVETPPPGFNSPN 1033
K + G EG D E A+ + ++ PT P PG P+
Sbjct: 2508 KRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPD 2564
Score = 37 (18.1 bits), Expect = 3.9e-40, Sum P(4) = 3.9e-40
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 1113 EQSRNQNNPEVKGEETPVSSE 1133
E R +PE K TP E
Sbjct: 1846 EFDREDEDPEYKPTRTPFKDE 1866
Score = 37 (18.1 bits), Expect = 3.2e-36, Sum P(6) = 3.2e-36
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 673 SPPISDVSAGPESKSNLQSENN---SGGLRLSKSVSMGKQDALS 713
+PP D S + L SG L+ S + K+DAL+
Sbjct: 2348 TPPTMDSPLQKRSFAELSMVGQASISGSEDLTTSPQLSKEDALN 2391
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 484 (175.4 bits), Expect = 3.0e-42, Sum P(2) = 3.0e-42
Identities = 100/193 (51%), Positives = 130/193 (67%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK 71
G + + + N M+LR CNHPYL Q AE +L V GK+ +LD+LLPK
Sbjct: 451 GGGERKRLLNIAMQLRKCCNHPYLFQ-GAEPGPPYTTGDHL---VTNAGKMVLLDKLLPK 506
Query: 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131
LK D RVL FS MTRLLD++EDYL ++ Y+Y R+DG+T G +R A I+ +N+ S F+
Sbjct: 507 LKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFV 566
Query: 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191
FLLS RAGG+G+NL AD VI++D+DWNPQVDLQAQ RAHRIGQK++V V RF T +E
Sbjct: 567 FLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIE 626
Query: 192 EQVRASAEHKLGV 204
+V A KL +
Sbjct: 627 AKVIERAYKKLAL 639
Score = 60 (26.2 bits), Expect = 3.0e-42, Sum P(2) = 3.0e-42
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 2077 DAEANNIIDAEGGGNMRQTV----PQDLGLPLSSSDVEEEKI---EGFS 2118
+ E ++ A M+ T+ P+++G PL++ +VEE+++ EGFS
Sbjct: 800 EKEVRYLMQAHQKTQMKDTIEVDEPEEVGDPLTAEEVEEKELLLEEGFS 848
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 500 (181.1 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 103/224 (45%), Positives = 149/224 (66%)
Query: 8 LGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 67
L ++ SK + + N +M+LR CNHPYL EE + H ++ GK+ +LD+
Sbjct: 580 LNAMTGSKNQML-NILMQLRKCCNHPYLFD-GIEEPPYIEGNH----LIETSGKMSLLDK 633
Query: 68 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127
LLP+LK + RVL FS MTRLLD+++DY +K Y YLR+DG T G +R I++FN+ +S
Sbjct: 634 LLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNS 693
Query: 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187
+FIFLLS RAGG+G+NL AD VI+FD+D+NPQ+D+QA RAHRIGQK+ V+V RF T
Sbjct: 694 KYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQ 753
Query: 188 QTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL 231
+VEE++ A KL + + I G + N++ E+ ++ L +L
Sbjct: 754 NSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDIL 797
Score = 41 (19.5 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 683 PESKSNLQSENNSGGLRLSKSVSMGKQ 709
PE +N + NN +K + GKQ
Sbjct: 1152 PEKINNNDTNNNKSTTLKNKKLKKGKQ 1178
Score = 37 (18.1 bits), Expect = 5.1e-41, Sum P(2) = 5.1e-41
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 1224 DSVEKLEDTVDDHSLVKELIH 1244
D +EK+ED +++ + +E I+
Sbjct: 976 DELEKIEDKWNNYMINQEKIN 996
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 500 (181.1 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 103/224 (45%), Positives = 149/224 (66%)
Query: 8 LGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 67
L ++ SK + + N +M+LR CNHPYL EE + H ++ GK+ +LD+
Sbjct: 580 LNAMTGSKNQML-NILMQLRKCCNHPYLFD-GIEEPPYIEGNH----LIETSGKMSLLDK 633
Query: 68 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127
LLP+LK + RVL FS MTRLLD+++DY +K Y YLR+DG T G +R I++FN+ +S
Sbjct: 634 LLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNS 693
Query: 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187
+FIFLLS RAGG+G+NL AD VI+FD+D+NPQ+D+QA RAHRIGQK+ V+V RF T
Sbjct: 694 KYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQ 753
Query: 188 QTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL 231
+VEE++ A KL + + I G + N++ E+ ++ L +L
Sbjct: 754 NSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDIL 797
Score = 41 (19.5 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 683 PESKSNLQSENNSGGLRLSKSVSMGKQ 709
PE +N + NN +K + GKQ
Sbjct: 1152 PEKINNNDTNNNKSTTLKNKKLKKGKQ 1178
Score = 37 (18.1 bits), Expect = 5.1e-41, Sum P(2) = 5.1e-41
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 1224 DSVEKLEDTVDDHSLVKELIH 1244
D +EK+ED +++ + +E I+
Sbjct: 976 DELEKIEDKWNNYMINQEKIN 996
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 491 (177.9 bits), Expect = 2.1e-41, Sum P(3) = 2.1e-41
Identities = 98/200 (49%), Positives = 136/200 (68%)
Query: 13 NSKGRSVHNSVMELRNICNHPYLSQ-LHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLP 70
+++G S+ N +MELR CNHPYL++ + E ++ K + +++ GKL ++D+LLP
Sbjct: 784 SNQGPSLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQIFQKLIQASGKLVLIDKLLP 843
Query: 71 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 130
KLK +H+VL FS M +LD+++DYLT++ Y + R+DG G DR A ID+F++ DS F
Sbjct: 844 KLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQAAIDRFSKPDSDRF 903
Query: 131 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190
+FLL RAGG+G+NL AADTVIIFD+DWNPQ DLQAQAR HRIGQ + V V R T T
Sbjct: 904 VFLLCTRAGGIGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQDKMVKVYRLVTKNTY 963
Query: 191 EEQVRASAEHKLGVANQSIT 210
E + A KLG+ +T
Sbjct: 964 ERLMFDKASKKLGLDRAVLT 983
Score = 64 (27.6 bits), Expect = 2.1e-41, Sum P(3) = 2.1e-41
Identities = 25/120 (20%), Positives = 46/120 (38%)
Query: 742 EQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVI 801
+Q+ +N N DS + S S+ + PS ++ S K+ ++ + ++
Sbjct: 1253 KQNEEEENNNNNDNDKVNSDSIEKESSSSSSSSPSSNINQDNSIEKKEENDTTVKDEKMV 1312
Query: 802 PILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYTGSTNTEGISNTIHHV 861
I L K VN + T + + TL +TE N EG ++H+
Sbjct: 1313 DIHELQETKVEPNVNANTNSTTTTTTTTTTTTTL-----LTEFNDNDNNDEGYHEYLNHI 1367
Score = 60 (26.2 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 14/73 (19%), Positives = 31/73 (42%)
Query: 1104 FDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSS--- 1160
FD+ ++++ E+ N NN K + E+ +S+ + + +S + +
Sbjct: 1248 FDLELKQNEEEENNNNNDNDKVNSDSIEKESSSSSSSSPSSNINQDNSIEKKEENDTTVK 1307
Query: 1161 DDKTCSVTPAMET 1173
D+K + ET
Sbjct: 1308 DEKMVDIHELQET 1320
Score = 54 (24.1 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 20/113 (17%), Positives = 45/113 (39%)
Query: 926 VFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKEIFSETCSSKAKTGDSSL 985
+FD +L Q+ + ++ ++ + ++ S ++ + + + I + K + D+++
Sbjct: 1247 LFDLELKQNEEEENNNNNDNDKVNSDSIEKESSSSSSSSPSSNINQDNSIEKKEENDTTV 1306
Query: 986 NEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPTVETPPPGFNSPNENPGE 1038
+ K V +S T + T T T FN N+N E
Sbjct: 1307 KDEKMVDIHELQETKVEPNVNANTNSTTTTTTTTTTTTTLLTEFND-NDNNDE 1358
Score = 49 (22.3 bits), Expect = 2.1e-41, Sum P(3) = 2.1e-41
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 1111 HNEQSRNQNNPEVKGEETPVSSEAPAST-EAFEQEKVTNTSSFVNLADLSSDDKTCSVTP 1169
+N+ + NN G+ T + P+S ++ + V N +N + +K S+
Sbjct: 1961 NNDNNAKNNNTFTYGKSTKSKNRPPSSPMKSNRNQNVNNNHKNINNTNGIVVEKKASLIN 2020
Query: 1170 AMETAPGFDIPIEKGVEQSGTEIDA-KVKWKNTP 1202
+ + F +G ++ T D K K K++P
Sbjct: 2021 ILHSEEEFSD--NEGFKRIDTTDDRLKKKQKSSP 2052
Score = 45 (20.9 bits), Expect = 3.4e-40, Sum P(2) = 3.4e-40
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEG-MGGPSPPLVIA 2232
EEE N +D + V S IE + + + P ++ ++E E +V
Sbjct: 1257 EEENNNNNDNDKVNSD--SIEKESSSSSSSSPSSNINQDNSIEKKEENDTTVKDEKMVDI 1314
Query: 2233 EDKTENEIEEDPVVNS 2248
+ E ++E P VN+
Sbjct: 1315 HELQETKVE--PNVNA 1328
Score = 44 (20.5 bits), Expect = 7.0e-41, Sum P(3) = 7.0e-41
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSS-VSQIESKEPEAKA--FEPM-DVVDGAVALEN 2217
+++ G L ++EK DK+P GS +S ++ K ++ F+ + +VV LE
Sbjct: 1685 QQSTGDDDDLLEDDEKGGNIDKKPSGSDELSLVQCKRVLSRIQFFQKLRNVVLKIKDLEE 1744
Query: 2218 TSEGMGGPSP 2227
+ + PSP
Sbjct: 1745 VFKNL--PSP 1752
Score = 43 (20.2 bits), Expect = 8.9e-41, Sum P(3) = 8.9e-41
Identities = 11/66 (16%), Positives = 28/66 (42%)
Query: 1111 HNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTS-SFVNLADLSSDDKTCSVTP 1169
+N + N NN ++ + F + N S S +N+ +++S + +++
Sbjct: 2129 NNNNNNNNNNNNNNNNNNNNNNNNSNNNSLFTKNNNNNNSNSVLNIKNINSSNNGNNIST 2188
Query: 1170 AMETAP 1175
+ +P
Sbjct: 2189 EFDFSP 2194
Score = 41 (19.5 bits), Expect = 5.2e-39, Sum P(3) = 5.2e-39
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 934 HSQNKSRDSFGSKTISLRSKQETADVNDVARVMKE-IFSETCSSKAKTGDSSLNE 987
HS + + + ++E + ND +V + I E+ SS + + S++N+
Sbjct: 1238 HSYHLEKKRLFDLELKQNEEEENNNNNDNDKVNSDSIEKESSSSSSSSPSSNINQ 1292
Score = 39 (18.8 bits), Expect = 4.2e-37, Sum P(4) = 4.2e-37
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 1218 ENKTDGDSVEKLEDTVDDHSL 1238
E K + D+ K E VD H L
Sbjct: 1297 EKKEENDTTVKDEKMVDIHEL 1317
Score = 39 (18.8 bits), Expect = 4.2e-37, Sum P(4) = 4.2e-37
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 1105 DIPIEKHNEQSRNQNNPEVKG----EETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSS 1160
D IEK E + ++ +ET V A+T + T T++ L + +
Sbjct: 1293 DNSIEKKEENDTTVKDEKMVDIHELQETKVEPNVNANTNSTTTTTTTTTTTTTLLTEFND 1352
Query: 1161 DD 1162
+D
Sbjct: 1353 ND 1354
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 470 (170.5 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
Identities = 127/384 (33%), Positives = 200/384 (52%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL A E + Y + + GKL +
Sbjct: 979 EALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAAMEAAKMPNGMYEGGGLTKSSGKLLL 1038
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L + Y+Y R+DG +GG R ID+FN
Sbjct: 1039 LQKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNA 1098
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+P F+FLLS RAGG+G+NL ADTV+I+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1099 PGAPQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1158
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ +E
Sbjct: 1159 VTKASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILKFGTEELFKDEGE 1216
Query: 245 XXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP-SRLVTDDD 303
S D +++D+ + AT ++ + E L ++ V D+
Sbjct: 1217 GENKEGQEDSSVIHYDD-KAIDRLLDRNQDATDDTELQSMN---EYLSSFKVAQYVVKDE 1272
Query: 304 LKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWTE 360
+A E + + V P+ K H ++ G+GKR R+ +Y + E
Sbjct: 1273 EEAEEEVQREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQE 1332
Query: 361 EEFEKMCQAES-SDSPKLKEEGLE 383
+ + Q++ SD EEG E
Sbjct: 1333 DRDWQDDQSDGQSDYSVASEEGDE 1356
Score = 76 (31.8 bits), Expect = 8.5e-41, Sum P(3) = 8.5e-41
Identities = 35/137 (25%), Positives = 58/137 (42%)
Query: 2132 VPLDESKGPDAEVSS-------QTAIEGGGVVSIPVPEEADGPASFLAAEEEKN-ECSDK 2183
VP E G DA+ + A E I VP+E DG A+ + E+EK E +K
Sbjct: 1544 VPKAEDAGKDADKEKVKNGDGEKEANENKNSEVIAVPDE-DGRAASASEEKEKGKEEKEK 1602
Query: 2184 EPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKTENEIEED 2243
P SS ++ + E K E D ++T + G + ++ K E + +E
Sbjct: 1603 TPESSSEAEKADGKQEEKEEENAKSGDSEEKTDDTDKPKGSEADKET-SDAKGEKKDDEP 1661
Query: 2244 PVVNSVAVEESKGSEAD 2260
+++ V + K + D
Sbjct: 1662 EKMDTTPVTDEKKGQKD 1678
Score = 75 (31.5 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
Identities = 50/193 (25%), Positives = 69/193 (35%)
Query: 899 KTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETAD 958
KTPTTG P Q + P+ PDG + + K ++ G K + E
Sbjct: 1524 KTPTTG-TP---SDTQPNTPA-PDGVPKAEDAGKDADKEKVKNGDGEKEANENKNSEVIA 1578
Query: 959 VNDV---ARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKT 1015
V D A E + K KT +SS K E AK S++KT
Sbjct: 1579 VPDEDGRAASASEEKEKGKEEKEKTPESSSEAEK----ADGKQEEKEEENAKSGDSEEKT 1634
Query: 1016 CSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQ- 1074
P G + E K+D + D TPV+ K E K K +
Sbjct: 1635 DDTDK-----PKGSEADKETSDAKGEKKDDEPEKMDTTPVTDEKKGQKDE--KDSGKTEE 1687
Query: 1075 AGRIENIANSSPD 1087
AG++ N S+ D
Sbjct: 1688 AGKLPN-GESAKD 1699
Score = 72 (30.4 bits), Expect = 2.2e-40, Sum P(3) = 2.2e-40
Identities = 37/170 (21%), Positives = 69/170 (40%)
Query: 2063 PSASSIPRGESKGPDAEANNIIDAEGGGNMRQT-------VPQDLGLPLSSSDVEEEKIE 2115
P+ +P+ E G DA+ + + +G + VP + G S+S+ +E+ E
Sbjct: 1539 PAPDGVPKAEDAGKDADKEKVKNGDGEKEANENKNSEVIAVPDEDGRAASASEEKEKGKE 1598
Query: 2116 GFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEE 2175
K S E+ + +E + +A+ S + E P EAD S E+
Sbjct: 1599 EKEKTPESSSEAEKADGKQEEKEEENAK--SGDSEEKTDDTDKPKGSEADKETSDAKGEK 1656
Query: 2176 EKNECS--DKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMG 2223
+ +E D PV + ++ K E + +G A ++++ G G
Sbjct: 1657 KDDEPEKMDTTPVTDEKKGQKDEKDSGKTEEAGKLPNGESA-KDSAAGAG 1705
Score = 63 (27.2 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 46/182 (25%), Positives = 71/182 (39%)
Query: 2090 GNMRQTVPQDLG-LPLSSSDVEE-EKIEG-FSKP----VGSEKE-SIASAVPLDESKGPD 2141
G RQ V +G + L V+E E + G +S P + K S A + P SK P
Sbjct: 1468 GLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMMELSENKTTSTAGSHPDSPSKTPT 1527
Query: 2142 AEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIES-KEPEA 2200
S T +P E+A A E+ KN +KE + S++ + + +
Sbjct: 1528 TGTPSDTQPNTPAPDGVPKAEDAGKDAD---KEKVKNGDGEKEANENKNSEVIAVPDEDG 1584
Query: 2201 KAFEPMDVVD-GAVALENTSEGMGGPSPPLVIAEDKTENEIEE-DPVVNSVAVEESKGSE 2258
+A + + G E T E E+K E + D + ++ KGSE
Sbjct: 1585 RAASASEEKEKGKEEKEKTPESSSEAEKADGKQEEKEEENAKSGDSEEKTDDTDKPKGSE 1644
Query: 2259 AD 2260
AD
Sbjct: 1645 AD 1646
Score = 63 (27.2 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 42/172 (24%), Positives = 68/172 (39%)
Query: 1707 GLPSLSSATKE---EKI-DGSLDKDPDSN----LVVLEDSKGSIGDQMDCCQSGVV---- 1754
G+P A K+ EK+ +G +K+ + N ++ + D G + + G
Sbjct: 1543 GVPKAEDAGKDADKEKVKNGDGEKEANENKNSEVIAVPDEDGRAASASEEKEKGKEEKEK 1602
Query: 1755 VPENLSDFCQPSSSLAPWE---AKIDGSSEK-DPVSSQSVLEGSKETVAEAGDQMDISIM 1810
PE+ S+ + E AK S EK D E KET G++ D
Sbjct: 1603 TPESSSEAEKADGKQEEKEEENAKSGDSEEKTDDTDKPKGSEADKETSDAKGEKKDDE-- 1660
Query: 1811 PEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPK-ESVVEAGDQMGV 1861
PE +D + T E+K + EKD + A + P ES ++ G+
Sbjct: 1661 ----PEKMD--TTPVTDEKKGQKDEKDSGKTEEAGKLPNGESAKDSAAGAGI 1706
Score = 56 (24.8 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 40/157 (25%), Positives = 63/157 (40%)
Query: 1764 QPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPAS 1823
QP++ K + + KD + V G E A ++ +P++ D A+
Sbjct: 1535 QPNTPAPDGVPKAEDAG-KD-ADKEKVKNGDGEKEANENKNSEVIAVPDE-----DGRAA 1587
Query: 1824 LATPEEKTEGSE---KDPDSSFAA------QEDPKESVVEAGDQMGVSLGGATVMEKSSE 1874
A+ EEK +G E K P+SS A QE+ +E ++GD + T K SE
Sbjct: 1588 SAS-EEKEKGKEEKEKTPESSSEAEKADGKQEEKEEENAKSGDSEEKT--DDTDKPKGSE 1644
Query: 1875 -DLATPPLSLANEEEMIEGFDNDP-TGISMAVMDSKE 1909
D T +++ E D P T D K+
Sbjct: 1645 ADKETSDAKGEKKDDEPEKMDTTPVTDEKKGQKDEKD 1681
Score = 52 (23.4 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 1179 IPIEKGVEQSGTEIDAKVKWKNTPLP---GEAIVA-GIEVFKPE-NKTDGDSVEKLEDT 1232
+P E G S +E K K + P EA A G + K E N GDS EK +DT
Sbjct: 1579 VPDEDGRAASASEEKEKGKEEKEKTPESSSEAEKADGKQEEKEEENAKSGDSEEKTDDT 1637
Score = 52 (23.4 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 19/96 (19%), Positives = 37/96 (38%)
Query: 1059 TLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQ 1118
T S +EA K + K + EN + ++K+ + P G + E + + +
Sbjct: 1603 TPESSSEAEKADGKQEEKEEENAKSGDSEEKT-----DDTDKPKGSEADKETSDAKGEKK 1657
Query: 1119 NNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
++ K + TPV+ E + + K N
Sbjct: 1658 DDEPEKMDTTPVTDEKKGQKDEKDSGKTEEAGKLPN 1693
Score = 50 (22.7 bits), Expect = 9.8e-39, Sum P(2) = 9.8e-39
Identities = 29/165 (17%), Positives = 50/165 (30%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSI-PTAPVPDSVSPSAVKGQSGT---IDPSSAVAAL 620
N+ + +P T T G S P P PD V + G+ +
Sbjct: 1509 NKTTSTAGSHPDSPSKTPTTGTPSDTQPNTPAPDGVPKAEDAGKDADKEKVKNGDGEKEA 1568
Query: 621 NSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKT-QSGGVTPRRRGKRQALGSPPISDV 679
N N+ + + K + KT +S + GK++ +
Sbjct: 1569 NENKNSEVIAVPDEDGRAASASEEKEKGKEEKEKTPESSSEAEKADGKQEEKEE---ENA 1625
Query: 680 SAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQP 724
+G +S+ + G K S K + E K+ P
Sbjct: 1626 KSG-DSEEKTDDTDKPKGSEADKETSDAKGEKKDDE-PEKMDTTP 1668
Score = 49 (22.3 bits), Expect = 8.5e-41, Sum P(3) = 8.5e-41
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 1311 ECSTVSVKTDVGNHPQNVE--PTSASPERSGPQNSAVGFCDKSEIPSMEAEVAK 1362
E S + G+HP + PT+ +P + P A K+E +A+ K
Sbjct: 1505 ELSENKTTSTAGSHPDSPSKTPTTGTPSDTQPNTPAPDGVPKAEDAGKDADKEK 1558
Score = 46 (21.3 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 1699 EREKSEELGLPSLSSATKEEKIDGSLDKDPDSN 1731
E+EK +E + S+++ EK DG ++ + N
Sbjct: 1592 EKEKGKEEKEKTPESSSEAEKADGKQEEKEEEN 1624
Score = 46 (21.3 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1985 GVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVE 2020
G A +E+EK + EK P SS +++ G + E
Sbjct: 1584 GRAASASEEKEKGKEEKEKTPESSSEAEKADGKQEE 1619
Score = 45 (20.9 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 30/130 (23%), Positives = 51/130 (39%)
Query: 1017 SVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPV-SGHTLASKTEALKPENKAQA 1075
S T T +SP++ P TGT +D +TP G A + K +
Sbjct: 1507 SENKTTSTAGSHPDSPSKTP--TTGTPSDTQ---PNTPAPDGVPKAEDAGKDADKEKVKN 1561
Query: 1076 GRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAP 1135
G E AN + + + + VP+ + G + E+ + + E+TP SS
Sbjct: 1562 GDGEKEANENKNSEVIA-VPDED----GRAASASEEKEKGKEEK------EKTPESSSEA 1610
Query: 1136 ASTEAFEQEK 1145
+ ++EK
Sbjct: 1611 EKADGKQEEK 1620
Score = 41 (19.5 bits), Expect = 8.6e-38, Sum P(2) = 8.6e-38
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAK 2201
+++DG + + A EE +E D+ S+ S+ P K
Sbjct: 1339 DQSDGQSDYSVASEEGDEDFDER------SEANSRRPNRK 1372
Score = 39 (18.8 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 1318 KTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAE 1359
KT P + +P + +P+ A DK ++ + + E
Sbjct: 1524 KTPTTGTPSDTQPNTPAPDGVPKAEDAGKDADKEKVKNGDGE 1565
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 455 (165.2 bits), Expect = 3.4e-41, Sum P(3) = 3.4e-41
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 988 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1047
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1048 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1107
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1108 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1167
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1168 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1224
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1225 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1283
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1284 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1343
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1344 EDRDWQDDQSDNQSDYSVASEEGDE 1368
Score = 94 (38.1 bits), Expect = 3.4e-41, Sum P(3) = 3.4e-41
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 2135 DESKGPDAEVSSQTAIEGG-GVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQI 2193
+ES + EV S TA E P P A PA+ A E++K + P G ++
Sbjct: 1567 EESTEGEKEVKS-TAPEATVECAQPPAPAPATAPATATAPEDDKAPA--EPPEGEE--KV 1621
Query: 2194 ESKEPEAKAFEPMDV-VDGAVALENTSEGMGGPSPPLVIAEDKTENEIEED 2243
E E + + EPM+ G +E E P+V+ EDK E + EE+
Sbjct: 1622 EKAEVKERTEEPMETEAKGTTEVEKVEEKSAVDLTPIVV-EDKEEKKEEEE 1671
Score = 76 (31.8 bits), Expect = 7.1e-40, Sum P(2) = 7.1e-40
Identities = 43/161 (26%), Positives = 62/161 (38%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
E KK S TPT TP G PN P + ++ + +
Sbjct: 1518 EENKKMSQPGSPSPKTPTPSTP--GDTQPN-TPAPVPPAEDGIKIEENSLKEE-----ES 1569
Query: 1064 TEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEV 1123
TE K E K+ A + + P + P TAP P E + + + EV
Sbjct: 1570 TEGEK-EVKSTAPEA-TVECAQPPAPAPATAPATATAPEDDKAPAEPPEGEEKVEK-AEV 1626
Query: 1124 KGE-ETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDK 1163
K E P+ +EA +TE EKV S+ V+L + +DK
Sbjct: 1627 KERTEEPMETEAKGTTEV---EKVEEKSA-VDLTPIVVEDK 1663
Score = 73 (30.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 32/131 (24%), Positives = 50/131 (38%)
Query: 1764 QPSSSLAPWEAKIDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPA 1822
QP++ AP DG E++ + + EG KE V + + P PA
Sbjct: 1543 QPNTP-APVPPAEDGIKIEENSLKEEESTEGEKE-VKSTAPEATVECAQPPAPAPATAPA 1600
Query: 1823 SLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATP--P 1880
+ PE+ +E + + KE E M G T +EK E A P
Sbjct: 1601 TATAPEDDKAPAEPPEGEEKVEKAEVKERTEEP---METEAKGTTEVEKVEEKSAVDLTP 1657
Query: 1881 LSLANEEEMIE 1891
+ + ++EE E
Sbjct: 1658 IVVEDKEEKKE 1668
Score = 56 (24.8 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
Identities = 29/118 (24%), Positives = 47/118 (39%)
Query: 1182 EKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKE 1241
EK V+ + E A V+ P P A ++K + E E+ V+ VKE
Sbjct: 1573 EKEVKSTAPE--ATVECAQPPAPAPATAPATATAPEDDKAPAEPPEG-EEKVEKAE-VKE 1628
Query: 1242 LIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETP 1299
P ++ G E+ S + L TP++++ E + DV + ETP
Sbjct: 1629 RTEE-PMETEAK-GTTEVEKVEEKSAVDL-TPIVVEDKEEKKEEEEKKDVMLQNGETP 1683
Score = 55 (24.4 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 35/164 (21%), Positives = 62/164 (37%)
Query: 1610 PGADNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFS 1669
PG P VP + E++ + E + ++ A EA + +
Sbjct: 1539 PGDTQPNTPAPVPPAEDGIKIEENSLKEEESTEGEKEVKSTAPEATVECAQPPAPAPATA 1598
Query: 1670 PRSMSGVVDELVDEAGDHMGVSHSPVHVVE-REKSEELGLPSLSSATKEEKID--GSLDK 1726
P + + D D+A V E +E++EE T+ EK++ ++D
Sbjct: 1599 PATATAPED---DKAPAEPPEGEEKVEKAEVKERTEEPMETEAKGTTEVEKVEEKSAVDL 1655
Query: 1727 DPDSNLVVLEDS--KGSIGDQMDCCQSGVVVPENLSDFCQPSSS 1768
P +V+ED K ++ D P++LSD Q +S
Sbjct: 1656 TP----IVVEDKEEKKEEEEKKDVMLQNGETPKDLSDEKQKKNS 1695
Score = 51 (23.0 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 34/119 (28%), Positives = 50/119 (42%)
Query: 1084 SSPDDKSLPMVPNLETAPPGFD-IPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFE 1142
S+P D P P PP D I IE+++ + + + E GE+ V S AP +T
Sbjct: 1537 STPGDTQ-PNTP--APVPPAEDGIKIEENS--LKEEESTE--GEKE-VKSTAPEATVECA 1588
Query: 1143 QEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNT 1201
Q ++ A DDK PA E G + +EK + TE + + K T
Sbjct: 1589 QPPAPAPATAPATATAPEDDKA----PA-EPPEGEE-KVEKAEVKERTEEPMETEAKGT 1641
Score = 50 (22.7 bits), Expect = 3.4e-41, Sum P(3) = 3.4e-41
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA VP + G + L E S
Sbjct: 1512 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS--LKEEES 1569
Query: 796 SKG 798
++G
Sbjct: 1570 TEG 1572
Score = 44 (20.5 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 10/66 (15%), Positives = 32/66 (48%)
Query: 1771 PWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEK 1830
P E + G++E + V +S ++ + V + ++ + + + ++ + P L+ ++K
Sbjct: 1633 PMETEAKGTTEVEKVEEKSAVDLTPIVVEDKEEKKEEEEKKDVMLQNGETPKDLSDEKQK 1692
Query: 1831 TEGSEK 1836
++
Sbjct: 1693 KNSKQR 1698
Score = 43 (20.2 bits), Expect = 7.0e-36, Sum P(3) = 7.0e-36
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 1988 AETVQEEEKTELSCEKQPIGSSVDDESKGP-EVE 2020
AE + EEK E + K+ ++ E+KG EVE
Sbjct: 1612 AEPPEGEEKVEKAEVKERTEEPMETEAKGTTEVE 1645
Score = 40 (19.1 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 355 EEQWTEEEFEKMCQAESSDSPK-LKEEGLEKS 385
+E+ EEE +K ++ ++PK L +E +K+
Sbjct: 1663 KEEKKEEEEKKDVMLQNGETPKDLSDEKQKKN 1694
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 477 (173.0 bits), Expect = 4.1e-41, Sum P(3) = 4.1e-41
Identities = 108/236 (45%), Positives = 147/236 (62%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYL-----SQLHAE--EVDTLI-PKHYLPPIVRLCG 60
G G S ++ N++MELR CNHPYL ++ E E L P+ +L +++ G
Sbjct: 1283 GGGGGSNVPNLLNTMMELRKCCNHPYLINGAEEKIMEEFRETHPLDQPEFHLQAMIQAAG 1342
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
KL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A ID
Sbjct: 1343 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1402
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V
Sbjct: 1403 RFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK 1462
Query: 181 VLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 233
+ R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1463 IYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAANGVQQLSKKEIEDLLRK 1518
Score = 83 (34.3 bits), Expect = 4.1e-41, Sum P(3) = 4.1e-41
Identities = 36/150 (24%), Positives = 63/150 (42%)
Query: 2115 EGFSKPVGSEKESIASAVPLDES-KGPDAEVSSQTAIEGGGVVSIPVPE-EADGPASFLA 2172
+G PV +P DE K +V+ +E G + + + EA P +
Sbjct: 2219 KGVELPVIVSDPLTPLTLPKDEEVKEEQGDVTLPK-VENGSIEDVKEEKSEALSPKKEVK 2277
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKE-PEAKA-FEPMDVVDGAVALENTSEGMGGPSPPLV 2230
EE++N K+ ++E K+ E K E + VDG V + + P+ L
Sbjct: 2278 NEEDENGLGPKQEPKEEKMEVEEKDVTEFKTDVEQVCPVDGMVEKKPMDQE---PTDTLP 2334
Query: 2231 IAEDKTENEIEEDPVVNSVAVEESKGSEAD 2260
+EDK + +E P N ++ E++ E +
Sbjct: 2335 SSEDKNAQDEKELPTGNKLSTEKASEDEEE 2364
Score = 62 (26.9 bits), Expect = 6.4e-39, Sum P(3) = 6.4e-39
Identities = 36/154 (23%), Positives = 57/154 (37%)
Query: 1993 EEEKTELSCEKQPIGSSVD-DESKGPEVEPCVQMDVRGD--GIVPETVPEELGLPSSPMV 2049
+EE+ +++ K GS D E K + P ++ D G+ P+ P+E +
Sbjct: 2243 KEEQGDVTLPKVENGSIEDVKEEKSEALSPKKEVKNEEDENGLGPKQEPKEEKMEVEEKD 2302
Query: 2050 VXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDV 2109
V P + E K D E + + + N + G LS+
Sbjct: 2303 VTEFKTDVEQVC-PVDGMV---EKKPMDQEPTDTLPSSEDKNAQDEKELPTGNKLSTEKA 2358
Query: 2110 EEEKIEGFSKPVGSEKESIASAVPLDESKGPDAE 2143
E++ E + SEK S A L E K D E
Sbjct: 2359 SEDEEEKMDEDDKSEKSSQAEVGALSERKNFDEE 2392
Score = 61 (26.5 bits), Expect = 1.7e-38, Sum P(3) = 1.7e-38
Identities = 37/143 (25%), Positives = 64/143 (44%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVI-VPEHKSENMGEKDDISSEH-AFGSSLVLQDKAS 1652
K + V +E G V L P +N G + V E KSE + K ++ +E G + K
Sbjct: 2238 KDEEVKEEQGDVTL-PKVEN--GSIEDVKEEKSEALSPKKEVKNEEDENGLGPKQEPKEE 2294
Query: 1653 EAEIGDR-IDEPQVDGFSPRSMSGVVDE--LVDEAGDHMGVSHSPVHVVEREKSEELGLP 1709
+ E+ ++ + E + D + G+V++ + E D + S E+E L
Sbjct: 2295 KMEVEEKDVTEFKTDVEQVCPVDGMVEKKPMDQEPTDTLPSSEDKNAQDEKELPTGNKLS 2354
Query: 1710 S-LSSATKEEKIDGSLDKDPDSN 1731
+ +S +EEK+D DK S+
Sbjct: 2355 TEKASEDEEEKMDED-DKSEKSS 2376
Score = 54 (24.1 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 64/314 (20%), Positives = 113/314 (35%)
Query: 519 TPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGG 578
T P + Q +++P G K+ A+ D+ D K+ + Q+E S
Sbjct: 2330 TDTLPSSEDKNAQDEKELPT--GNKLSTE-KASEDEEEKMDEDDKSEKSSQAEVGALSER 2386
Query: 579 ESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXXX 638
++ + N +S+ TA D + + ++PS++ L +
Sbjct: 2387 KNFDEESN-ASLSTAR--DETNETRDCFSVDDVEPSASQMFSERSLFSFWPKDRVMINRM 2443
Query: 639 XXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGL 698
M+ K S + Q G P+ S G S S + S L
Sbjct: 2444 DNICEAVMKGKWPSNRRQFFDFPGLLPGYSSMATESPLQRRSLGDLSLVGQTSYSGSEDL 2503
Query: 699 RLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSN-----QP 753
+S V+ K DALS + + + + + A+ A + E ++ +S+ Q
Sbjct: 2504 TMSPQVN--KDDALSLSVPRQRRRRRRKIEIEAERAAKRRNLMEMVAQLRESHAEGQAQA 2561
Query: 754 INLP-ATHDSSSQPSGST-PAQVPSMDLGNVASDTKEVLSENSSSK----GGVIPILALS 807
I+L A H SS S S P + S E+L +SS+ G ++ +
Sbjct: 2562 IDLTKALHSVSSSSSASAFPGAMAS---SATLKAQMELLQPGASSRPRANGSLLDTELPN 2618
Query: 808 NMKAVERVNIQSFE 821
K R N++ E
Sbjct: 2619 RRKRGRRKNVEGLE 2632
Score = 51 (23.0 bits), Expect = 4.6e-37, Sum P(4) = 4.6e-37
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 1545 LVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHG 1604
++ SD + +P+D V GD+ + +E G + + ++ + DE+G
Sbjct: 2225 VIVSDPLTPLTLPKDEEVKEEQGDVTLPKVENGSIEDVKEEKSEALSPKKEVKNEEDENG 2284
Score = 51 (23.0 bits), Expect = 6.0e-37, Sum P(3) = 6.0e-37
Identities = 35/162 (21%), Positives = 51/162 (31%)
Query: 453 GTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQPTTAFVPVAPGSQS 512
G K EK A T SA A A S T AF P + +
Sbjct: 2957 GDEKEEKQAEKSSETVESADATGDAAALNAAAAA-----AAAGMSTGTLAFNPFLLSTMA 3011
Query: 513 ASAC-PSTPMQPKGRGRRIQSGEQVPRRRGKK-IGLVLPAASDDIPSPGPDPKTNEQPQS 570
PS + P G I Q + + L A +D S P+TN+ P +
Sbjct: 3012 PGLFYPSMFLPPSLGGLAIPGFPQASLADLQSAVSGALGATGEDKESD-KGPRTNQDPNA 3070
Query: 571 ESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTID 612
+ ++T D + SV + G + +D
Sbjct: 3071 SVADVETADNTLEDSDSEESQNKTADSSVLDDDLAGPAEEMD 3112
Score = 51 (23.0 bits), Expect = 1.5e-36, Sum P(4) = 1.5e-36
Identities = 30/142 (21%), Positives = 55/142 (38%)
Query: 1218 ENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIM- 1276
E KTD + V ++ V+ + +E P D ++D ++P L
Sbjct: 2305 EFKTDVEQVCPVDGMVEKKPMDQEPTDTLPSSED--------KNAQDEKELPTGNKLSTE 2356
Query: 1277 KSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKT--DVGNHPQN---VEPT 1331
K++E M DD ++ S + + + S + E S S+ T D N ++ V+
Sbjct: 2357 KASEDEEEKMDEDDKSEKSSQAEVGALSERKNFDEESNASLSTARDETNETRDCFSVDDV 2416
Query: 1332 SASPERSGPQNSAVGFCDKSEI 1353
S + + S F K +
Sbjct: 2417 EPSASQMFSERSLFSFWPKDRV 2438
Score = 50 (22.7 bits), Expect = 4.6e-37, Sum P(4) = 4.6e-37
Identities = 22/76 (28%), Positives = 32/76 (42%)
Query: 1615 PEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMS 1674
P G + E SE+ EK D + +K+S+AE+G + D S S+S
Sbjct: 2348 PTGNKLSTEKASEDEEEKMDEDDK---------SEKSSQAEVGALSERKNFDEESNASLS 2398
Query: 1675 GVVDELVDEAGDHMGV 1690
DE +E D V
Sbjct: 2399 TARDE-TNETRDCFSV 2413
Score = 47 (21.6 bits), Expect = 3.1e-36, Sum P(4) = 3.1e-36
Identities = 26/110 (23%), Positives = 40/110 (36%)
Query: 1775 KIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTE-- 1832
K++ S +D +S K+ V D+ + E E +++ T E KT+
Sbjct: 2253 KVENGSIEDVKEEKSEALSPKKEVKNEEDENGLGPKQEPKEEKMEVEEKDVT-EFKTDVE 2311
Query: 1833 ------GS-EKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSED 1875
G EK P P A D+ + G EK+SED
Sbjct: 2312 QVCPVDGMVEKKPMDQEPTDTLPSSEDKNAQDEKELPTGNKLSTEKASED 2361
Score = 47 (21.6 bits), Expect = 3.1e-36, Sum P(4) = 3.1e-36
Identities = 52/184 (28%), Positives = 75/184 (40%)
Query: 1754 VVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAG-DQMDISIMPE 1812
++ E LS CQPS L W G ++D +L G+ A+ G + D I+ +
Sbjct: 2157 LLEERLS-LCQPSPDLPAWWEP--GRHDRD------LLRGA----AKHGVSRTDYHILND 2203
Query: 1813 KLPEHLDIPASLATPEEKTEGSE-----KDPDSSFAAQEDPKESVVEAGDQM--GVSLGG 1865
PE + A + K G E DP + +D +E E GD V G
Sbjct: 2204 --PELSFLEAYRKFTQGK--GVELPVIVSDPLTPLTLPKD-EEVKEEQGDVTLPKVENGS 2258
Query: 1866 AT-VMEKSSEDLATPPLSLANEE-EMIEGFDNDPTGISMAVMDSKECAAEAAD--QMCVS 1921
V E+ SE L+ P + NEE E G +P M V + K+ D Q+C
Sbjct: 2259 IEDVKEEKSEALS-PKKEVKNEEDENGLGPKQEPKEEKMEV-EEKDVTEFKTDVEQVCPV 2316
Query: 1922 EGCV 1925
+G V
Sbjct: 2317 DGMV 2320
Score = 46 (21.3 bits), Expect = 4.1e-41, Sum P(3) = 4.1e-41
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1594 AKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDI 1635
AKA + ++ G + AD EG PE+K M KDD+
Sbjct: 1878 AKA-IAAEQRGADMM---ADGVEGEEEDPEYKPLRMSFKDDL 1915
Score = 45 (20.9 bits), Expect = 1.5e-36, Sum P(4) = 1.5e-36
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 739 KPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSK 797
K E V V P+ LP + + T +P ++ G++ D KE SE S K
Sbjct: 2219 KGVELPVIVSDPLTPLTLPKDEEVKEEQGDVT---LPKVENGSI-EDVKEEKSEALSPK 2273
Score = 43 (20.2 bits), Expect = 1.7e-38, Sum P(3) = 1.7e-38
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 1988 AETVQEEEKTELSCEKQPIGSSVDDESKGPEVE 2020
A+ E+ +E S K S +DD+ GP E
Sbjct: 3078 ADNTLEDSDSEESQNKTADSSVLDDDLAGPAEE 3110
Score = 43 (20.2 bits), Expect = 8.9e-38, Sum P(3) = 8.9e-38
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 1833 GSEKDPDSSFAAQEDPKESV--VEAGDQMGVSLGGATVMEKSSE------DLATPPLSLA 1884
G +K+ D +DP SV VE D K+++ DLA P +
Sbjct: 3053 GEDKESDKGPRTNQDPNASVADVETADNTLEDSDSEESQNKTADSSVLDDDLAGPAEEMD 3112
Query: 1885 NEEEMIEGFDND 1896
+ E ++ D+D
Sbjct: 3113 SMEGGMDDEDDD 3124
Score = 42 (19.8 bits), Expect = 5.2e-36, Sum P(3) = 5.2e-36
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 727 VATSADVAGPDQKPAEQSVRVVQS-NQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASD 785
V+ + G D K +++ R Q N + T D++ + S S +Q + D + D
Sbjct: 3045 VSGALGATGED-KESDKGPRTNQDPNASVADVETADNTLEDSDSEESQNKTADSSVLDDD 3103
Query: 786 TKEVLSENSSSKGGV 800
E S +GG+
Sbjct: 3104 LAGPAEEMDSMEGGM 3118
Score = 41 (19.5 bits), Expect = 5.0e-36, Sum P(4) = 5.0e-36
Identities = 27/115 (23%), Positives = 45/115 (39%)
Query: 692 ENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADV--AGPDQKPAEQSVRVVQ 749
+ G + L K V G + + +E S + + V D GP Q+P E+ + V +
Sbjct: 2243 KEEQGDVTLPK-VENGSIEDVKEEKSEALSPKK-EVKNEEDENGLGPKQEPKEEKMEVEE 2300
Query: 750 SN-----QPINLPATHDS--SSQPSGSTPAQ-VPSMDLGNVASDTKEVLSENSSS 796
+ + D +P P +PS + N A D KE+ + N S
Sbjct: 2301 KDVTEFKTDVEQVCPVDGMVEKKPMDQEPTDTLPSSEDKN-AQDEKELPTGNKLS 2354
Score = 39 (18.8 bits), Expect = 1.2e-36, Sum P(4) = 1.2e-36
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 1723 SLDKDPDSNLVVLEDSKGSIGDQMDCCQSGV 1753
S +K DS+ VL+D ++MD + G+
Sbjct: 3090 SQNKTADSS--VLDDDLAGPAEEMDSMEGGM 3118
Score = 38 (18.4 bits), Expect = 6.0e-37, Sum P(3) = 6.0e-37
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 356 EQWTEEEFEKMCQAESSDSPKLKEEG 381
E+ +E+E EKM + + S+ E G
Sbjct: 2356 EKASEDEEEKMDEDDKSEKSSQAEVG 2381
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 457 (165.9 bits), Expect = 4.8e-41, Sum P(4) = 4.8e-41
Identities = 99/224 (44%), Positives = 139/224 (62%)
Query: 21 NSVMELRNICNHPYLSQLHAEEVDTLI-------PKHYLPPIVRLCGKLEMLDRLLPKLK 73
N++MELR C HPYL E++ P+ Y ++ GK+ ++D+LLPKLK
Sbjct: 2304 NTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPESYYKNLILSAGKMVLIDKLLPKLK 2363
Query: 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133
A HRVL FS M R LD++EDYL +++Y + R+DG G R ID++++ S F+FL
Sbjct: 2364 ANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVFL 2423
Query: 134 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 193
L +AGG+G+NL AADTVII+D+DWNPQ DLQAQAR HRIGQ++ V + R T E +
Sbjct: 2424 LCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYERE 2483
Query: 194 VRASAEHKLGVAN---QSI-TAGFFDNNTSAEDRREYLESLLRE 233
+ A KLG+ QS+ T G D N ++E +E LL++
Sbjct: 2484 MFDKASMKLGLDKAVLQSMNTQGSKDGNNKQLSKKE-IEDLLKK 2526
Score = 101 (40.6 bits), Expect = 9.5e-06, Sum P(5) = 9.5e-06
Identities = 51/222 (22%), Positives = 83/222 (37%)
Query: 1020 PTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIE 1079
P + P P +E EL D + G + T++ + + ++ A ++
Sbjct: 1665 PKEKAPEP---KQDEEKSELDEATTDKPEGDEKFKTEGESKKDLTDSEETKLESSAMEVD 1721
Query: 1080 NIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPE-VKGEETPVSSEAPAST 1138
+ S PDD N + D + K +++S+ + E VK EE + E S+
Sbjct: 1722 SKEESEPDDSKKSDEDNKDKDKMEVDDEVGKSDKESKPEEQSETVKTEENSKAIEEDKSS 1781
Query: 1139 EAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKW 1198
+ + L + D+K A+ A G D EK + S E K
Sbjct: 1782 TVLTADHAKEPETV--LEKMEVDEKANDDQSAVSKAEGSD---EKSTDDSNPEEATTEKN 1836
Query: 1199 KNT-PLPGEA--IVAGIEVFKPEN--KTDGDSVEKLEDTVDD 1235
K + + GE + G E K EN KT+ D K E D
Sbjct: 1837 KESLEIEGEKERVKEGEESVKKENDEKTEADMENKPEPVFID 1878
Score = 95 (38.5 bits), Expect = 4.8e-41, Sum P(4) = 4.8e-41
Identities = 63/257 (24%), Positives = 103/257 (40%)
Query: 1991 VQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEELGLPSSPMVV 2050
++EE K+E S EK +++D K + E ++ + D PET +E L S +
Sbjct: 3688 IKEEIKSEESPEKHDTADNLED--KNSDAEESTKIKGKED-FNPETTEKE-ALDESTNL- 3742
Query: 2051 XXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVE 2110
P E K E + AE G ++ P+
Sbjct: 3743 -NKDKSSTETLVPEIEDSKPSEDK---MEVEELPVAENGE--KEGSPEKCS-DAEDKKFS 3795
Query: 2111 EEKIEGFSKPVG--SEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPA 2168
EEK + P G SE E+ +A +E+ D+E S + E V + EE G
Sbjct: 3796 EEKPSSPAVPDGKVSEMEADEAAPNTEENCSGDSE-SPEKECEDKVVEKV---EEEKGEN 3851
Query: 2169 SFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPP 2228
S+ AEE+K E E SS+ S++ E + V + ++ + + GPS P
Sbjct: 3852 SYEKAEEQKEETEKLEK--SSIESEPSEKSETVLEPEVAVPKKSTGDQDILDLVAGPSDP 3909
Query: 2229 L--VIAEDKTENEIEED 2243
+ ++K E +EE+
Sbjct: 3910 DDDEVMKEK-EKAVEEE 3925
Score = 81 (33.6 bits), Expect = 4.8e-41, Sum P(4) = 4.8e-41
Identities = 42/192 (21%), Positives = 74/192 (38%)
Query: 683 PESKSNLQSENNSGGLRLSKS----VSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQ 738
P S SEN SGG ++S ++ + S+ L K VA ++ +
Sbjct: 3024 PSSSGKSSSENASGGNDKTESENDATTVSESSYKSEVLPGKGSDLDVSVAQQDALSATPE 3083
Query: 739 KPAEQSVRVVQSNQPINLPATHD--SSSQPSGSTPAQ---VPSMDLG--NVASDTKEVLS 791
++ +++ ++ + D SS P + AQ V + D G ++ S+ K+
Sbjct: 3084 LANTSDPKMNKNDAQVSASVSCDPADSSSPEAAGKAQGTGVQTGDAGELDIESEKKDNEK 3143
Query: 792 ENSSSKGGVIPILALSNMKAVERVN---IQSFEEKACTNASKSKATLPALDSITEPYTGS 848
E S G + A + A+ R +S A TN S + T ++ T S
Sbjct: 3144 ETKESTGDAPAVEAKKDSAAIARAEGDKTESCTNNATTNISTTTTTTTITNTTTTTNNPS 3203
Query: 849 TNTEGISNTIHH 860
+ +NT H
Sbjct: 3204 SKAANSNNTTDH 3215
Score = 76 (31.8 bits), Expect = 8.5e-39, Sum P(5) = 8.5e-39
Identities = 40/206 (19%), Positives = 84/206 (40%)
Query: 901 PTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVN 960
P +P GK QG+G D + + ++ ++++S G ++ +K+++A +
Sbjct: 3107 PADSSSPEAAGKAQGTGVQTGDAGELDIESEKKDNEKETKESTGDAP-AVEAKKDSAAI- 3164
Query: 961 DVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTP 1020
AR + +E+C++ A T S+ + A ++ D S +
Sbjct: 3165 --ARAEGDK-TESCTNNATTNISTTTTTTTITNTTTTTNNPSSKAANSNNTTDHANSNSH 3221
Query: 1021 T---VETPPPGFNSPN----ENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKA 1073
E G P E+ + + D + R ++ + K E LK + KA
Sbjct: 3222 LGLDEEESVAGSYPPTVAAVEDATTMWPSMQDLNTRLRRV-ITAYQRNYKKEELKLQQKA 3280
Query: 1074 QAGRIENIANSSPDDKSLPMVPNLET 1099
+++ + +S+P S+P P L++
Sbjct: 3281 ---KLQALVSSTPP-LSVPTTPTLQS 3302
Score = 73 (30.8 bits), Expect = 9.5e-06, Sum P(5) = 9.5e-06
Identities = 69/349 (19%), Positives = 120/349 (34%)
Query: 495 PSSQPTTAFVPVAPG-SQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASD 553
P+S T A V G S+ + G G ++ + + + G G S
Sbjct: 1336 PNSTETPAAVKKRAGASKRRKQYGEDGAEQTGEGSEVEDNKPLVPKAGSADGEA-ETTSG 1394
Query: 554 DIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDP 613
G P ++ P S+ P G + VPDS DP
Sbjct: 1395 GTGVDGESPDYDDIPVSKI--PRGSNEDEKEAEAGDETVDSVPDSAG-----------DP 1441
Query: 614 SSAVAALNSELNT--NLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQAL 671
+S + + + +T + A + K ++ G + P G+ L
Sbjct: 1442 ASTPSRRDRKRSTARSRRNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTL 1501
Query: 672 GSPPISDVSAGPESKSNLQ-SENNSGGLRLSKSVSMG-KQDALSQELSNKIQV--QPCGV 727
P E SN + S N+ + V + D S +++ ++ +P
Sbjct: 1502 DRTPPPSPPPDSEMDSNKRRSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSAN 1561
Query: 728 ATSADVAGPD-QKPAEQSVRVVQSNQPI-----NLPATHDSSSQPSGSTPAQVP-----S 776
A++++ AG D +K QS + Q + NLP S + S ST A S
Sbjct: 1562 ASNSN-AGSDVEKTEPQSGAEGDAAQEVGEEKSNLPLDESSQLEASSSTSAVAEKERQIS 1620
Query: 777 MDLGNVASDTK-EVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKA 824
D N A +K + N+ + ++ L L+ + + +EKA
Sbjct: 1621 TDAANAAMSSKPNYVYINTGDEDSMVVQLVLAMRMGKRELILDKPKEKA 1669
Score = 72 (30.4 bits), Expect = 2.2e-38, Sum P(5) = 2.2e-38
Identities = 43/209 (20%), Positives = 76/209 (36%)
Query: 2065 ASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGS- 2123
++ I E P+ +D N ++ + L + S E+K+E PV
Sbjct: 3717 STKIKGKEDFNPETTEKEALDESTNLNKDKSSTETLVPEIEDSKPSEDKMEVEELPVAEN 3776
Query: 2124 -EKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEE--KNEC 2180
EKE E K E S A+ G V + E A + + E + EC
Sbjct: 3777 GEKEGSPEKCSDAEDKKFSEEKPSSPAVPDGKVSEMEADEAAPNTEENCSGDSESPEKEC 3836
Query: 2181 SDK--EPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKT-E 2237
DK E V + ++ E + E + ++ E + + P + + + T +
Sbjct: 3837 EDKVVEKVEEEKGENSYEKAEEQKEETEKLEKSSIESEPSEKSETVLEPEVAVPKKSTGD 3896
Query: 2238 NEIEE------DPVVNSVAVEESKGSEAD 2260
+I + DP + V E+ K E +
Sbjct: 3897 QDILDLVAGPSDPDDDEVMKEKEKAVEEE 3925
Score = 68 (29.0 bits), Expect = 8.5e-39, Sum P(5) = 8.5e-39
Identities = 52/215 (24%), Positives = 86/215 (40%)
Query: 1672 SMSGVVDELVDEAGDHMGV--SHSPVHVVERE-KSEEL--------GLPSLSSATKEE-K 1719
S+ V +L DE + V SPV ++ E KSEE L +S +E K
Sbjct: 3660 SVKNEVIDLDDELMTNESVIKKESPVTPIKEEIKSEESPEKHDTADNLEDKNSDAEESTK 3719
Query: 1720 IDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGS 1779
I G D +P++ D ++ D + +VPE + D +PS E K++
Sbjct: 3720 IKGKEDFNPETTEKEALDESTNLNK--DKSSTETLVPE-IED-SKPS------EDKME-- 3767
Query: 1780 SEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPD 1839
E+ PV+ EGS E ++A D+ E+ P +P + E E + +
Sbjct: 3768 VEELPVAENGEKEGSPEKCSDAEDKK----FSEEKPSSPAVPDGKVSEMEADEAAPNTEE 3823
Query: 1840 SSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSE 1874
+ E P++ + + G EK+ E
Sbjct: 3824 NCSGDSESPEKECEDKVVEKVEEEKGENSYEKAEE 3858
Score = 68 (29.0 bits), Expect = 8.4e-37, Sum P(6) = 8.4e-37
Identities = 59/301 (19%), Positives = 110/301 (36%)
Query: 1088 DKSLPMVPNLETAPPGFDIPIEKH--NEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
D +L V ++ G D+ + NE N + + G+E V + +T+ + K
Sbjct: 2953 DPNLCFVTHVGAGAAGDDLAVTSLPINEDDANSKHDD--GDE--VDDDGTTTTKDSDSTK 3008
Query: 1146 VTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPG 1205
+T + +L D + + S + E A G + E E T + ++ +K+ LPG
Sbjct: 3009 LTGGDNKDSLLD--PERPSSSGKSSSENASGGNDKTES--ENDATTV-SESSYKSEVLPG 3063
Query: 1206 EAIVAGIEVFK-------PENKTDGD-SVEKLEDTVDDHSLVKELIHRSPDHSDMVIGN- 1256
+ + V + PE D + K + V SP+ + G
Sbjct: 3064 KGSDLDVSVAQQDALSATPELANTSDPKMNKNDAQVSASVSCDPADSSSPEAAGKAQGTG 3123
Query: 1257 -VPGNTSE---DSSKMPLETPLIMKSTEGPSVSMKADDVA------DHSRETPILSGSPI 1306
G+ E +S K E + + P+V K D A D + + + I
Sbjct: 3124 VQTGDAGELDIESEKKDNEKETKESTGDAPAVEAKKDSAAIARAEGDKTESCTNNATTNI 3183
Query: 1307 NSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPSD 1366
++ T +T++ T N+P + S + NS +G ++ + D
Sbjct: 3184 STTTTTTTITNTTTTTNNPSSKAANSNNTTDHANSNSHLGLDEEESVAGSYPPTVAAVED 3243
Query: 1367 A 1367
A
Sbjct: 3244 A 3244
Score = 68 (29.0 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 49/245 (20%), Positives = 85/245 (34%)
Query: 557 SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSA 616
S G P T+ S + S A + +P P S P A + + A
Sbjct: 5094 SQGKMPSTSGSNTGTSTSSSKSSKAAATAAAAQLPQIPGMSSDFPQAFLAEMA----AQA 5149
Query: 617 VAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSP-P 675
+AA L + + G S + + +R+ ++ A
Sbjct: 5150 MAAAGGSLPLSGPGSLASLAGLTGGSAGG---GGSSASGSTSHSSSKRQREQDAFKQQMD 5206
Query: 676 ISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAG 735
+ G S +L +++GG S S + A + L + Q Q A S G
Sbjct: 5207 YYTKTLGLGSGISLIPTSSAGGSSASSSAANAAAAAYAAALDAEQQHQQQQKALSKRARG 5266
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQP-SGSTPAQVPSMDLGNVASDTKEVLSENS 794
D P ++ + + + P+NL A+ S + G + + S A K L+ +
Sbjct: 5267 -DLHPTKEELAALAAGLPLNLGASMSSIEKSLRGGSSSSSSSTPAPMTAEQDKVTLTPLN 5325
Query: 795 SSKGG 799
+S GG
Sbjct: 5326 ASGGG 5330
Score = 68 (29.0 bits), Expect = 1.4e-05, Sum P(7) = 1.4e-05
Identities = 39/152 (25%), Positives = 55/152 (36%)
Query: 647 QTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSM 706
QT Q ++ Q T +Q PI P + +L S N S + +
Sbjct: 708 QTSQQQQQPQQPQATLTSPHHQQMQHQSPIHQQQQSPHHQQHLPSYNQSQQQFDPFANIL 767
Query: 707 G-KQDALSQELSNKIQVQ-PCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSS 764
G Q A SQ+ + V P Q+P++Q V QS Q S
Sbjct: 768 GDNQPAASQQTMSPAHVSSPVPAQMQQQQHQTQQQPSQQ---VPQSQQ--------QQVS 816
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSS 796
QP T Q PS +++S E + N SS
Sbjct: 817 QPQQQTQQQQPSTPSHHLSSILNETANSNDSS 848
Score = 66 (28.3 bits), Expect = 8.5e-39, Sum P(5) = 8.5e-39
Identities = 32/142 (22%), Positives = 55/142 (38%)
Query: 959 VNDVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAK--KQSSDDKTC 1016
+N K+ SE + +A +G S G + + A +QSS +
Sbjct: 4159 LNSSTMAPKDWESEIANMEALSGSSGRGRGGNSSASSGMQPPPAHQHASLSRQSSGQFSK 4218
Query: 1017 SVTPTVETPPPGFNSPNENPGEL-----TGTKNDASVRG--DHTPVSGHTLASKTEALKP 1069
P ++TPPP +P + L T AS G D + V ++ SK ++
Sbjct: 4219 PAVPAMKTPPPSMGAPMDLSSSLPKMNMTEMLKSASSSGAIDLSEVQDFSMPSKKSSV-- 4276
Query: 1070 ENKAQAGRIENIANSSPDDKSL 1091
+ A + ++ N S D +L
Sbjct: 4277 -HAALSSAFPSMGNKSKLDDTL 4297
Score = 66 (28.3 bits), Expect = 0.00019, Sum P(5) = 0.00019
Identities = 64/302 (21%), Positives = 113/302 (37%)
Query: 493 IAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAAS 552
I +QP + ++P S S P+ MQ + + Q +QVP+ + +++
Sbjct: 766 ILGDNQPAASQQTMSPAHVS-SPVPAQ-MQQQQHQTQQQPSQQVPQSQQQQVSQPQQQTQ 823
Query: 553 DDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTID 612
PS P + +E+ N + + A N S+ ++ +S + S V Q ++
Sbjct: 824 QQQPST-PSHHLSSI-LNETANSNDSSTLAVAANDSNNSSS---NSSTNSIVNNQPTSVH 878
Query: 613 PSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALG 672
S++ +++NS N N Q G A+
Sbjct: 879 DSNSQSSINSSSN-NQQQLLMDNTNSHGGNSESAQNAGVDVGLFDNNSMSSNSAAVAAVA 937
Query: 673 SPPISDVSAGPESKS---NLQSENNSG---GLRLSKSVSMGKQDALSQELSNKIQVQPCG 726
S S +A +S S N + E N GL + + V + D L Q+ ++ + Q
Sbjct: 938 SNAASAAAALLDSNSQSSNAEFEKNQSEGEGLGVVEGVIANETD-LPQDENSVSKTQDIT 996
Query: 727 VATSADVAGPD--QKP-AE-QSVRVVQS-----NQPINLPAT-HDSSSQPSGSTPAQVPS 776
++T D +KP AE + ++ QS + P T +S S S P P
Sbjct: 997 LSTELPTIQDDLQEKPTAEMEQTQLGQSLGDLSKSLLEEPKTVEESGEDKSQSAPGVAPP 1056
Query: 777 MD 778
D
Sbjct: 1057 AD 1058
Score = 65 (27.9 bits), Expect = 1.0e-40, Sum P(5) = 1.0e-40
Identities = 55/252 (21%), Positives = 87/252 (34%)
Query: 1684 AGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLD-KDPDSNLVVLEDSKGSI 1742
AGD + V+ P++ + + G E DG+ KD DS + D+K S+
Sbjct: 2967 AGDDLAVTSLPINEDDANSKHDDG--------DEVDDDGTTTTKDSDSTKLTGGDNKDSL 3018
Query: 1743 GDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAG 1802
D SG EN S K + ++ VS S E + G
Sbjct: 3019 LDPERPSSSGKSSSENASG----------GNDKTESENDATTVSESSY---KSEVLPGKG 3065
Query: 1803 DQMDISIMPEKLPEHLDIPASLA-TPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMG- 1860
+D+S+ + + L LA T + K ++ +S + S AG G
Sbjct: 3066 SDLDVSVAQQ---DALSATPELANTSDPKMNKNDAQVSASVSCDPADSSSPEAAGKAQGT 3122
Query: 1861 -VSLGGATVMEKSSE--DLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKE-CAAEAAD 1916
V G A ++ SE D + +E D I+ A D E C A
Sbjct: 3123 GVQTGDAGELDIESEKKDNEKETKESTGDAPAVEA-KKDSAAIARAEGDKTESCTNNATT 3181
Query: 1917 QMCVSEGCVVVT 1928
+ + +T
Sbjct: 3182 NISTTTTTTTIT 3193
Score = 65 (27.9 bits), Expect = 1.7e-38, Sum P(5) = 1.7e-38
Identities = 67/322 (20%), Positives = 119/322 (36%)
Query: 1699 EREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVL--EDSKGSIGDQMDCCQSGVVVP 1756
E+ + E +++ K E ID LD + +N V+ E I +++ +S P
Sbjct: 3645 EKAAATEKAAAEKAASVKNEVID--LDDELMTNESVIKKESPVTPIKEEIKSEES----P 3698
Query: 1757 E--NLSDFCQPSSSLAPWEAKIDG-------SSEKDPVSSQSVLEGSKETVAEAGDQMDI 1807
E + +D + +S A KI G ++EK+ + + L K + +++
Sbjct: 3699 EKHDTADNLEDKNSDAEESTKIKGKEDFNPETTEKEALDESTNLNKDKSSTETLVPEIED 3758
Query: 1808 SIMPEKLPEHLDIPASLATPEEKTEGS-EK--DPDSSFAAQEDPKESVVEAG--DQMGVS 1862
S E E ++P +A EK EGS EK D + ++E P V G +M
Sbjct: 3759 SKPSEDKMEVEELP--VAENGEK-EGSPEKCSDAEDKKFSEEKPSSPAVPDGKVSEMEAD 3815
Query: 1863 LGGATVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKECAAEAADQMCV-S 1921
E S D +P E++++E + + S + ++ E ++ + S
Sbjct: 3816 EAAPNTEENCSGDSESPEKEC--EDKVVEKVEEEKGENSYEKAEEQKEETEKLEKSSIES 3873
Query: 1922 EGCVVVTEKLSEDLGLNXXXXXXXXXXXXXXXXXDPVNSSVTVEDSKGFEAEACDQLHVL 1981
E L ++ + DP + V E K E E Q L
Sbjct: 3874 EPSEKSETVLEPEVAVPKKSTGDQDILDLVAGPSDPDDDEVMKEKEKAVEEECKKQAAEL 3933
Query: 1982 RGGGVVAETVQEEEKTELSCEK 2003
+ E +Q + EK
Sbjct: 3934 KARFPDLEVIQPATVKQQKLEK 3955
Score = 64 (27.6 bits), Expect = 6.9e-36, Sum P(4) = 6.9e-36
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 533 GEQVPRRRGKKIGLVLPAASDD--IPSPG-PDPKTNEQPQSESLNPSGGESTATD-GNVS 588
G++ R++ +I L L AA + P P P K + P S S+ P+ +S++ N
Sbjct: 4314 GKEKKRKKLDEIVLGLSAAKEQKTFPDPSLPSSKKPQIPPSVSVTPANLQSSSNQQSNQK 4373
Query: 589 --SIPTAPVPDSVSPSAVKGQSGTIDPSSA 616
+I VP + SGT SSA
Sbjct: 4374 PFTITVTTVPGKSKSGSSNSGSGTGGSSSA 4403
Score = 62 (26.9 bits), Expect = 1.2e-35, Sum P(7) = 1.2e-35
Identities = 29/123 (23%), Positives = 53/123 (43%)
Query: 679 VSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQ---VQPCGVATSADVAG 735
+SA PE + + N ++S SVS D+ S E + K Q VQ G A D+
Sbjct: 3078 LSATPELANTSDPKMNKNDAQVSASVSCDPADSSSPEAAGKAQGTGVQT-GDAGELDIES 3136
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSS--QPSGSTPAQVPSMDLGNVASDTKEVLSEN 793
++K E+ + + P + A DS++ + G + N+++ T N
Sbjct: 3137 -EKKDNEKETKESTGDAPA-VEAKKDSAAIARAEGDKTESCTNNATTNISTTTTTTTITN 3194
Query: 794 SSS 796
+++
Sbjct: 3195 TTT 3197
Score = 57 (25.1 bits), Expect = 1.1e-36, Sum P(6) = 1.1e-36
Identities = 37/170 (21%), Positives = 62/170 (36%)
Query: 1056 SGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQS 1115
SG + A A + +++ S S P VP ++T PP P++ +
Sbjct: 4183 SGRGRGGNSSASSGMQPPPAHQHASLSRQSSGQFSKPAVPAMKTPPPSMGAPMDLSSSLP 4242
Query: 1116 RNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAP 1175
+ +K SS + + + S V+ A LSS P+M
Sbjct: 4243 KMNMTEMLKS----ASSSGAIDLSEVQDFSMPSKKSSVHAA-LSS------AFPSMGNKS 4291
Query: 1176 GFDIPIEKGVEQSGTEIDAKVKWKNTPLPG-EAIVAGIEVFKPENKTDGD 1224
D + K ++++ I+ V K + IV G+ K E KT D
Sbjct: 4292 KLDDTLNKLMKKNNCTIEEPVIGKEKKRKKLDEIVLGLSAAK-EQKTFPD 4340
Score = 56 (24.8 bits), Expect = 1.0e-40, Sum P(5) = 1.0e-40
Identities = 34/149 (22%), Positives = 59/149 (39%)
Query: 1111 HNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVT--NTSSFVNLADLSSDDKTCSVT 1168
HN R +N + E T VS+ AP S T + SS ++ +D S S
Sbjct: 2780 HNLVPRGRNGGKSNKESTGVSTPAPGSASGSNSGNTTPAHKSSALDGSDKDSGGINASAV 2839
Query: 1169 PAMETA---PGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEV-FKPENKTDGD 1224
A T+ P EK + ++ K K+ ++ + + + +++ GD
Sbjct: 2840 AAAVTSIHDPNHWSKKEK--YDADAYLEGAYK-KHLGRHANKVLLRVRMLYYIQHEVIGD 2896
Query: 1225 SVEKLEDTVDDHSLVKELIHRSPDHSDMV 1253
V++++D + EL R P D V
Sbjct: 2897 FVQQIKDNTP----ISELPIRPPPTPDQV 2921
Score = 56 (24.8 bits), Expect = 1.8e-32, Sum P(5) = 1.8e-32
Identities = 73/333 (21%), Positives = 120/333 (36%)
Query: 508 PGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQ 567
PG Q+ + P+ K G+R+ G + P+ K++ L + P+ DPK EQ
Sbjct: 4563 PGPQNLTGEEPVPVINKQTGKRL-GGNKAPQL--KRLMQWLT----ENPNYEVDPKWLEQ 4615
Query: 568 PQSESLNPSGGESTATDGNVSSIPTAPVPDSVSP-SAVKGQSGTIDPSSAVAALNSELNT 626
Q+ PS ++ G SS + +S S+ S T SSA S+
Sbjct: 4616 MQNPMSTPSPRPASMESGYGSSAVKSHGGRPLSNLSSTSSSSHTQQQSSAA---QSQAGG 4672
Query: 627 NLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESK 686
N ++ Q Q G+ P LG+ + A + K
Sbjct: 4673 NSGSSKKNSRQQTAASAALDQAALQFGSL--AGLNPSLLANLPGLGAFDPKNPLAAFDPK 4730
Query: 687 SNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVR 746
+ L S + GG+ MG L + + G+ ++AG D QS+
Sbjct: 4731 NPLLSMS-FGGMP-----GMGNIPGLGNLNNMNLFASLAGMGGLGNLAGMDT----QSLA 4780
Query: 747 VVQSNQPINLPA-THDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILA 805
+ + L T S SG + AQ S + +S +K+ + LA
Sbjct: 4781 ALMAAAGPTLGGLTGASGGAGSGKSQAQSQSSATSSSSSASKKKQQQQQQQAQNEAAQLA 4840
Query: 806 LSNMKAVERVNIQSFEEKACTNASKSKATLPAL 838
+ + A + S + A +AS+ A P L
Sbjct: 4841 AA-ISASTGGSGASGGKNAAASASQLAAGFPFL 4872
Score = 55 (24.4 bits), Expect = 1.4e-05, Sum P(7) = 1.4e-05
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 557 SPG-PDPKTNEQPQSESLNPSGGESTA-TDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPS 614
SP P P +Q Q+++ P S + ++ + P P P++ G +G P+
Sbjct: 429 SPAKPPPPQQQQQQTQAQQPQQVVSNQPSQHSIQGMVGLPSPRPQPPTSGAGGAGAKGPA 488
Query: 615 SAVAALNS 622
A +N+
Sbjct: 489 PVAAPVNT 496
Score = 53 (23.7 bits), Expect = 8.5e-39, Sum P(5) = 8.5e-39
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 1275 IMKSTEGPSVSMKADDVADHSRETPILSGSPIN-----SGTECSTVSVKTDVGNHPQNVE 1329
I KS G S S + A + E ++ +P+N SG+ S+ + N P
Sbjct: 5293 IEKSLRGGSSSSSSSTPAPMTAEQDKVTLTPLNASGGGSGSSSSSAAAAGLAANLPSQTT 5352
Query: 1330 PTSASPERSGPQNSA 1344
T A P SG S+
Sbjct: 5353 ITIAPPISSGASTSS 5367
Score = 53 (23.7 bits), Expect = 8.5e-39, Sum P(5) = 8.5e-39
Identities = 22/93 (23%), Positives = 31/93 (33%)
Query: 2140 PDAEVSSQTAIEGGGVVSIPVPEEADGPAS----FLAAEEEKNECSDKEPVGSSVSQIES 2195
P +S+ T GGV + VP G +A + E + SS +
Sbjct: 4109 PGMSLSAATGSSAGGVSGLSVPSAGSGVGKKRKRHIAIDVETERAKLHALLNSSTMAPKD 4168
Query: 2196 KEPEAKAFEPMDVVDGAVALENTSEGMGGPSPP 2228
E E E + G N+S G PP
Sbjct: 4169 WESEIANMEALSGSSGRGRGGNSSASSGMQPPP 4201
Score = 53 (23.7 bits), Expect = 6.9e-36, Sum P(4) = 6.9e-36
Identities = 43/202 (21%), Positives = 81/202 (40%)
Query: 676 ISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCG---VATSAD 732
++ ++ + S+ QS+++ + S+S + + L N + G V T +
Sbjct: 4912 LNGATSSASNTSSTQSKSHQSQSKSSQSRNTTASANSAASLMNAMASMGGGASTVTTPST 4971
Query: 733 VAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTP------AQVPSMDLGN----V 782
A + + S R P SS G+ P +++ +MDL +
Sbjct: 4972 SASGSGRGRQSSSRNQSQTTPTAADMAQLSSLLMPGADPHLLESLSRMSNMDLAQATRLM 5031
Query: 783 ASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLP----AL 838
+S LS SS GG + + +A N+Q+ E++ S ++ LP AL
Sbjct: 5032 SSLGMPPLSGTPSSSGGGNTSTSKRSSQAANEANVQAKEQQKWLE-SLARGALPTDLAAL 5090
Query: 839 DSITE---PYTGSTNTEGISNT 857
+ ++ P T +NT G S +
Sbjct: 5091 QAFSQGKMPSTSGSNT-GTSTS 5111
Score = 52 (23.4 bits), Expect = 2.4e-36, Sum P(5) = 2.4e-36
Identities = 22/93 (23%), Positives = 39/93 (41%)
Query: 2169 SFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPP 2228
+F A + EK ++K+ + E E A +V+D L + SP
Sbjct: 3626 AFNAEKAEKLAAAEKDAATEKAAATEKAAAEKAASVKNEVIDLDDELMTNESVIKKESPV 3685
Query: 2229 LVIAED-KTENEIEEDPVVNSVAVEESKGSEAD 2260
I E+ K+E E+ +++ E K S+A+
Sbjct: 3686 TPIKEEIKSEESPEKHDTADNL---EDKNSDAE 3715
Score = 52 (23.4 bits), Expect = 5.1e-35, Sum P(3) = 5.1e-35
Identities = 30/111 (27%), Positives = 41/111 (36%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAAS-DDIPSPGPDPKTNEQ 567
G S PST GRGR+ S R + + A + PG DP E
Sbjct: 4961 GGASTVTTPSTSASGSGRGRQSSS-----RNQSQTTPTAADMAQLSSLLMPGADPHLLES 5015
Query: 568 PQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVA 618
S N ++T +SS+ P+ + S S G + T SS A
Sbjct: 5016 -LSRMSNMDLAQATRL---MSSLGMPPLSGTPSSSG-GGNTSTSKRSSQAA 5061
Score = 51 (23.0 bits), Expect = 1.4e-05, Sum P(7) = 1.4e-05
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 932 NQHSQNKSRDSF-GSKTISLRSKQETADVNDVARVMKEIFSETCSSKAKTGDSSLNEGKD 990
N S N S +S ++ S+ + +N + +++ + +S +S+ N G D
Sbjct: 858 NNSSSNSSTNSIVNNQPTSVHDSNSQSSINSSSNNQQQLLMDNTNSHGGNSESAQNAGVD 917
Score = 50 (22.7 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 25/91 (27%), Positives = 38/91 (41%)
Query: 548 LPAASDDIPSPGPDPKTNEQPQSE--SLNPSGGESTATDGNVSSIPTAP-VPD----SVS 600
L S S P P T EQ + LN SGG S ++ + ++ A +P +++
Sbjct: 5297 LRGGSSSSSSSTPAPMTAEQDKVTLTPLNASGGGSGSSSSSAAAAGLAANLPSQTTITIA 5356
Query: 601 PSAVKGQSGTIDPSSAVAALNSELNTNLATA 631
P G S + + S + S TN A A
Sbjct: 5357 PPISSGASTSSERSERSESRISLTITNAADA 5387
Score = 49 (22.3 bits), Expect = 1.0e-40, Sum P(5) = 1.0e-40
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 662 PRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSN 718
PRRR + + G + ++++ E SN ++ + GG+ L K+D ++ N
Sbjct: 2617 PRRRTQIKRYGHEDVMELNS--EESSN-ENSDEEGGIGLRSRRRKEKRDRAREKKGN 2670
Score = 49 (22.3 bits), Expect = 8.5e-39, Sum P(5) = 8.5e-39
Identities = 19/65 (29%), Positives = 24/65 (36%)
Query: 547 VLPAASDDIP-SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVK 605
VLP D+ S + P E N S + D VS+ + DS SP A
Sbjct: 3060 VLPGKGSDLDVSVAQQDALSATP--ELANTSDPKMNKNDAQVSASVSCDPADSSSPEAAG 3117
Query: 606 GQSGT 610
GT
Sbjct: 3118 KAQGT 3122
Score = 49 (22.3 bits), Expect = 8.5e-39, Sum P(5) = 8.5e-39
Identities = 31/142 (21%), Positives = 53/142 (37%)
Query: 497 SQPTTAFVP-VAPGSQSAS-ACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDD 554
+ P FV V G+ A S P+ + G++V G SD
Sbjct: 2952 ADPNLCFVTHVGAGAAGDDLAVTSLPINEDDANSKHDDGDEVDDD-----GTTTTKDSDS 3006
Query: 555 IPSPGPDPKTN----EQP----QSESLNPSGG-ESTATDGNVSSIPTAPVPDSVSPSAVK 605
G D K + E+P +S S N SGG + T ++ + +++ + V P
Sbjct: 3007 TKLTGGDNKDSLLDPERPSSSGKSSSENASGGNDKTESENDATTVSESSYKSEVLPGKGS 3066
Query: 606 GQSGTIDPSSAVAALNSELNTN 627
++ A++A NT+
Sbjct: 3067 DLDVSVAQQDALSATPELANTS 3088
Score = 49 (22.3 bits), Expect = 6.5e-35, Sum P(5) = 6.5e-35
Identities = 30/119 (25%), Positives = 47/119 (39%)
Query: 510 SQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQ 569
+ SASA ++ P+ + S +P K I + AA + G N
Sbjct: 4050 ASSASAASTSSGVPQVTQSKPSSSNSLPGLDAKSINAAVAAAVAAAAAGG-----NATSL 4104
Query: 570 SESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSG-TIDPSSAVAALNSELNTN 627
S SL P S AT + + VP + S K + ID + A L++ LN++
Sbjct: 4105 S-SLLPGMSLSAATGSSAGGVSGLSVPSAGSGVGKKRKRHIAIDVETERAKLHALLNSS 4162
Score = 48 (22.0 bits), Expect = 8.7e-36, Sum P(6) = 8.7e-36
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 1006 AKKQSSDDKTCSVTP---TVETPPPGFNSPNENPGELTGTKNDASVRG 1050
A QSS ++ + P TV T P S + N G TG + AS G
Sbjct: 4360 ANLQSSSNQQSNQKPFTITVTTVPGKSKSGSSNSGSGTGGSSSASGGG 4407
Score = 47 (21.6 bits), Expect = 1.3e-37, Sum P(6) = 1.3e-37
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 1355 SMEAEVAKCPSDAIVNNLLETPLDIKSIG-GPIVSMKAADVADADHPLETAVELGSPVNS 1413
S + P A + + TPL+ G G S AA A+ P +T + + P++S
Sbjct: 5302 SSSSSSTPAPMTAEQDKVTLTPLNASGGGSGSSSSSAAAAGLAANLPSQTTITIAPPISS 5361
Score = 46 (21.3 bits), Expect = 8.5e-39, Sum P(5) = 8.5e-39
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 891 VPVKRHGRKTPTTGEAPRRRGKK----QGSGPSIPDGSAVFDAKLNQHSQNKSRDSFG 944
+PV +G K + + KK + S P++PDG V + + ++ + N + G
Sbjct: 3771 LPVAENGEKEGSPEKCSDAEDKKFSEEKPSSPAVPDGK-VSEMEADEAAPNTEENCSG 3827
Score = 46 (21.3 bits), Expect = 1.3e-37, Sum P(6) = 1.3e-37
Identities = 28/107 (26%), Positives = 43/107 (40%)
Query: 1266 SKMPLETPLIMKSTEGPS--VSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGN 1323
+K P L+ TE P+ V K + + TP + + SG S +VK+ G
Sbjct: 4588 NKAPQLKRLMQWLTENPNYEVDPKWLEQMQNPMSTPSPRPASMESGYGSS--AVKSHGGR 4645
Query: 1324 HPQNVEPTSASP----ERSGPQNSAVGFCDKSEIPSMEAEVAKCPSD 1366
N+ TS+S + S Q+ A G S+ S + A D
Sbjct: 4646 PLSNLSSTSSSSHTQQQSSAAQSQAGGNSGSSKKNSRQQTAASAALD 4692
Score = 45 (20.9 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 1030 NSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDK 1089
NS +++ E+ + D T ++G +K L PE + +G+ + S +DK
Sbjct: 2984 NSKHDDGDEVDDDGTTTTKDSDSTKLTGGD--NKDSLLDPERPSSSGKSSSENASGGNDK 3041
Query: 1090 S 1090
+
Sbjct: 3042 T 3042
Score = 45 (20.9 bits), Expect = 9.5e-06, Sum P(5) = 9.5e-06
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
++GQ++D++ + V + +L V+ +T G D TS EY E +
Sbjct: 1225 QVGQQQDLMDISGNVAMGAANAVSSIPTTQLPVSEDCVTQGAGD--TSVVGMLEYSEGM 1281
Score = 44 (20.5 bits), Expect = 9.9e-36, Sum P(5) = 9.9e-36
Identities = 48/227 (21%), Positives = 80/227 (35%)
Query: 1139 EAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGF-DIPIEKGVEQSGTEIDAKVK 1197
EAF EK ++ D +++ + A E A + I+ E E K +
Sbjct: 3625 EAFNAEKAEKLAAAEK--DAATEKAAATEKAAAEKAASVKNEVIDLDDELMTNESVIKKE 3682
Query: 1198 WKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNV 1257
TP+ E + E PE D++E ++ + +K +P+ ++ +
Sbjct: 3683 SPVTPIKEE--IKSEE--SPEKHDTADNLEDKNSDAEESTKIKGKEDFNPETTEKEALDE 3738
Query: 1258 PGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPIL-SGSPINSGTECSTVS 1316
N ++D S P I S PS +D + E P+ +G S +CS
Sbjct: 3739 STNLNKDKSSTETLVPEIEDSK--PS-----EDKME-VEELPVAENGEKEGSPEKCSDAE 3790
Query: 1317 VKTDVGNHPQN-VEPTSASPERSGPQ---NSAVGFCDKSEIPSMEAE 1359
K P + P E + N+ SE P E E
Sbjct: 3791 DKKFSEEKPSSPAVPDGKVSEMEADEAAPNTEENCSGDSESPEKECE 3837
Score = 43 (20.2 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 1701 EKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLE-DSKGSIG 1743
E S+E G L S ++EK D + +K + + E D+ ++G
Sbjct: 2642 ENSDEEGGIGLRSRRRKEKRDRAREKKGNDEYIPRERDALAALG 2685
Score = 42 (19.8 bits), Expect = 1.1e-37, Sum P(5) = 1.1e-37
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1129 PVSSEAPASTEAFEQEKVTNTSSFVNLAD 1157
P+SS A S+E E+ + + + N AD
Sbjct: 5358 PISSGASTSSERSERSESRISLTITNAAD 5386
Score = 42 (19.8 bits), Expect = 3.3e-37, Sum P(6) = 3.3e-37
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 1299 PILSGSPINSGTECSTVSVKTDVGNHPQNVE 1329
P LSG+P +SG ++ S ++ + NV+
Sbjct: 5037 PPLSGTPSSSGGGNTSTSKRSSQAANEANVQ 5067
Score = 42 (19.8 bits), Expect = 9.5e-36, Sum P(3) = 9.5e-36
Identities = 42/192 (21%), Positives = 73/192 (38%)
Query: 664 RRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQ 723
R G + S P + ++A + K L N SGG S S S A + L+ + Q
Sbjct: 5298 RGGSSSSSSSTP-APMTA-EQDKVTLTPLNASGGGSGSSSSS-----AAAAGLAANLPSQ 5350
Query: 724 PCGVATSADVAGPDQKPAE-QSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNV 782
T+ +A P A S R +S I+L T+ + + P D +
Sbjct: 5351 -----TTITIAPPISSGASTSSERSERSESRISLTITNAADA---AKLPPPYEEADELII 5402
Query: 783 ASDTKEVLSEN-SSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSI 841
K+ + N SS GG + L + + ++ S A A+ ++ + + +
Sbjct: 5403 QPILKKPTAANPGSSHGGSVDDLDTAENTSAANLSGSSSSSAAAAAAAAAEENRRSSNRL 5462
Query: 842 TEPYTGSTNTEG 853
P +G+ G
Sbjct: 5463 KRPRSGNEQGSG 5474
Score = 41 (19.5 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 2171 LAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFE 2204
L +EE NE SD+E G + KE +A E
Sbjct: 2634 LNSEESSNENSDEEG-GIGLRSRRRKEKRDRARE 2666
Score = 41 (19.5 bits), Expect = 4.2e-34, Sum P(5) = 4.2e-34
Identities = 24/102 (23%), Positives = 36/102 (35%)
Query: 517 PSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
PS+P P G+ +++ E P S D SP K E E +
Sbjct: 3799 PSSPAVPDGKVSEMEADEAAPNTEEN--------CSGDSESP---EKECEDKVVEKVEEE 3847
Query: 577 GGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTI-DPSSAV 617
GE++ T + S S +S T+ +P AV
Sbjct: 3848 KGENSYEKAEEQKEETEKLEKSSIESEPSEKSETVLEPEVAV 3889
Score = 41 (19.5 bits), Expect = 0.00025, Sum P(7) = 0.00025
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 499 PTTAFVP-VAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPS 557
PT + P ++P S P Q + + + Q +QV + + + +PS
Sbjct: 413 PTMSPHPQMSPRPVGVSPAKPPPPQQQQQQTQAQQPQQVVSNQPSQHSI---QGMVGLPS 469
Query: 558 PGPDPKTN 565
P P P T+
Sbjct: 470 PRPQPPTS 477
Score = 40 (19.1 bits), Expect = 1.8e-37, Sum P(5) = 1.8e-37
Identities = 24/94 (25%), Positives = 38/94 (40%)
Query: 2094 QTVPQDLGLPLS-SSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEG 2152
+T P +G P+ SS + + + K S S V D S P + S A+
Sbjct: 4225 KTPPPSMGAPMDLSSSLPKMNMTEMLKSASSSGAIDLSEVQ-DFSM-PSKKSSVHAALSS 4282
Query: 2153 GGVVSIPVPEEADGPASFLAAEEEKNECSDKEPV 2186
S+ + D + L +KN C+ +EPV
Sbjct: 4283 A-FPSMGNKSKLDDTLNKLM---KKNNCTIEEPV 4312
Score = 40 (19.1 bits), Expect = 8.4e-37, Sum P(6) = 8.4e-37
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 1036 PGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQA 1075
P G K++ G TP G S + P +K+ A
Sbjct: 2784 PRGRNGGKSNKESTGVSTPAPGSASGSNSGNTTPAHKSSA 2823
Score = 39 (18.8 bits), Expect = 1.0e-39, Sum P(5) = 1.0e-39
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1103 GFDIPIEKHNEQSRNQNNPEVKG 1125
G + +E ++E+S N+N+ E G
Sbjct: 2627 GHEDVMELNSEESSNENSDEEGG 2649
Score = 39 (18.8 bits), Expect = 2.3e-37, Sum P(5) = 2.3e-37
Identities = 18/87 (20%), Positives = 33/87 (37%)
Query: 2069 PRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESI 2128
P G+ D G GN R++ Q SSS + +K + + +++
Sbjct: 4501 PLGDQLSIDYVGGGGASGSGSGNSRRSNRQQGNSQQSSSAAQLQKQQQQQQQQQQQQQQH 4560
Query: 2129 ASAVPLD-ESKGPDAEVSSQTAIEGGG 2154
+ P + + P ++ QT GG
Sbjct: 4561 SMPGPQNLTGEEPVPVINKQTGKRLGG 4587
Score = 39 (18.8 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 1767 SSLAPWEAKIDGSSEKDPVSSQSVLEGS 1794
S+ AP A S P S L+GS
Sbjct: 2800 STPAPGSASGSNSGNTTPAHKSSALDGS 2827
Score = 39 (18.8 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 217 NTSAEDRREYLESLLR 232
N A++++++LESL R
Sbjct: 5065 NVQAKEQQKWLESLAR 5080
Score = 39 (18.8 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 489 VMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKG-RGRRIQSGEQVP 537
+++G++ + + T P P S+ PS + P + Q Q P
Sbjct: 4325 IVLGLSAAKEQKTFPDPSLPSSKKPQIPPSVSVTPANLQSSSNQQSNQKP 4374
Score = 39 (18.8 bits), Expect = 3.5e-05, Sum P(5) = 3.5e-05
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 206 NQSITAGFFDNNTSAED 222
N + G FDNN+ + +
Sbjct: 913 NAGVDVGLFDNNSMSSN 929
Score = 38 (18.4 bits), Expect = 4.8e-41, Sum P(4) = 4.8e-41
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 1827 PEEKTEGSEKDPDSSFAAQE---DPKESVVEAGDQMGVSLGGATVMEKSSEDLAT 1878
P K S D + + D +ESV + ++ AT M S +DL T
Sbjct: 3202 PSSKAANSNNTTDHANSNSHLGLDEEESVAGSYPPTVAAVEDATTMWPSMQDLNT 3256
Score = 38 (18.4 bits), Expect = 1.4e-05, Sum P(7) = 1.4e-05
Identities = 17/93 (18%), Positives = 34/93 (36%)
Query: 283 GLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKG-EHLGALDTQH 341
GLG G P PS+ + A + M Y + G ++ G+L Q
Sbjct: 117 GLGAYGHPQAAPPSQQQRQSNASAYRQHMPAYGQQDQQKLASYGAQQSMMAGYGSLAPQQ 176
Query: 342 YGRGKRAREVRSYEEQWTEEEFEKMCQAESSDS 374
+ + + + Q +++ ++ Q + S
Sbjct: 177 QQQQQPPTPQQQQQAQQVQQQAQQQQQQQQQQS 209
Score = 37 (18.1 bits), Expect = 1.1e-34, Sum P(6) = 1.1e-34
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1217 PENKTDGDSVEKLEDTVDDHSLVK 1240
PE + + VEK+E+ ++S K
Sbjct: 3832 PEKECEDKVVEKVEEEKGENSYEK 3855
Score = 37 (18.1 bits), Expect = 1.4e-33, Sum P(6) = 1.4e-33
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 1548 SDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALLSSSKDIIAESAKADV 1598
S+ NME + G GR M+ P++ S S+ + +K V
Sbjct: 4171 SEIANMEALSGSSGRGRGGNSSASSGMQPPPAHQHASLSRQSSGQFSKPAV 4221
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 455 (165.2 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 988 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1047
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1048 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1107
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1108 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1167
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1168 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1224
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1225 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1283
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1284 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1343
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1344 EDRDWQDDQSDNQSDYSVASEEGDE 1368
Score = 87 (35.7 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 37/132 (28%), Positives = 59/132 (44%)
Query: 2118 SKPVGSEKESIASAVPLDES-KGPDAEVSSQTAIEGGGVVSIPVPEEA----DGPASFLA 2172
S P ++ + A P ++ K + + + +IEG V PE A PA A
Sbjct: 1537 STPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAP--A 1594
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVD-GAVALENTSEGMGGPSPPLVI 2231
+E+EK + P G ++E E + + EPM+ GA +E E P+V+
Sbjct: 1595 SEDEKVVV--EPPEGEE--KVEKAEVKERTEEPMETEPKGAADVEKVEEKSAIDLTPIVV 1650
Query: 2232 AEDKTENEIEED 2243
EDK E + EE+
Sbjct: 1651 -EDKEEKKEEEE 1661
Score = 54 (24.1 bits), Expect = 1.4e-35, Sum P(4) = 1.4e-35
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEE 1705
++K +AE+ +R +EP P+ G D V++ + + +P+ V ++E+ +E
Sbjct: 1608 EEKVEKAEVKERTEEPMET--EPK---GAAD--VEKVEEKSAIDLTPIVVEDKEEKKE 1658
Score = 48 (22.0 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
Identities = 29/105 (27%), Positives = 43/105 (40%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEA--GDQMGVSLG 1864
I I L E I E + + + A ED K VVE G++ +
Sbjct: 1557 IKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPASEDEKV-VVEPPEGEE---KVE 1612
Query: 1865 GATVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKE 1909
A V E++ E + T P A+ E++ E D T I V++ KE
Sbjct: 1613 KAEVKERTEEPMETEPKGAADVEKVEEKSAIDLTPI---VVEDKE 1654
Score = 47 (21.6 bits), Expect = 1.4e-35, Sum P(4) = 1.4e-35
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA VP + G + L E S
Sbjct: 1512 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS--LKEEES 1569
Query: 796 SKG 798
+G
Sbjct: 1570 IEG 1572
Score = 47 (21.6 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
Identities = 33/146 (22%), Positives = 55/146 (37%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGF-NSPNENPGELTGTKNDASVRGDHTPVSGHTLAS 1062
E KK S TPT TP N+P P G K + + + + G
Sbjct: 1518 EENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGE---K 1574
Query: 1063 KTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNE--QSRNQNN 1120
+ ++ PE + + A +S D+K + P E ++ E+ E ++ +
Sbjct: 1575 EVKSTAPETAIECTQAP--APASEDEKVVVEPPEGEEKVEKAEVK-ERTEEPMETEPKGA 1631
Query: 1121 PEV-KGEETPVSSEAPASTEAFEQEK 1145
+V K EE P E E++K
Sbjct: 1632 ADVEKVEEKSAIDLTPIVVEDKEEKK 1657
Score = 43 (20.2 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 355 EEQWTEEEFEKMCQAESSDSPK-LKEEGLEKSL 386
+E+ EEE +K ++ ++PK L +E +K++
Sbjct: 1653 KEEKKEEEEKKEVMLQNGETPKDLNDEKQKKNI 1685
Score = 42 (19.8 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 1986 VVAETVQEEEKTELSCEKQPIGSSVDDESKGP-EVE 2020
VV E + EEK E + K+ ++ E KG +VE
Sbjct: 1600 VVVEPPEGEEKVEKAEVKERTEEPMETEPKGAADVE 1635
Score = 40 (19.1 bits), Expect = 1.4e-35, Sum P(4) = 1.4e-35
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDG 2031
E +EEEK E+ + ++DE + ++ ++ DG
Sbjct: 1655 EKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNI-ADG 1696
Score = 37 (18.1 bits), Expect = 5.9e-35, Sum P(3) = 5.9e-35
Identities = 10/60 (16%), Positives = 29/60 (48%)
Query: 1771 PWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEK 1830
P E + G+++ + V +S ++ + V + ++ + E + ++ + P L ++K
Sbjct: 1623 PMETEPKGAADVEKVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQNGETPKDLNDEKQK 1682
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 455 (165.2 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 995 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1054
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1055 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1114
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1115 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1174
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1175 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1231
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1232 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1290
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1291 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1350
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1351 EDRDWQDDQSDNQSDYSVASEEGDE 1375
Score = 87 (35.7 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 37/132 (28%), Positives = 59/132 (44%)
Query: 2118 SKPVGSEKESIASAVPLDES-KGPDAEVSSQTAIEGGGVVSIPVPEEA----DGPASFLA 2172
S P ++ + A P ++ K + + + +IEG V PE A PA A
Sbjct: 1544 STPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAP--A 1601
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVD-GAVALENTSEGMGGPSPPLVI 2231
+E+EK + P G ++E E + + EPM+ GA +E E P+V+
Sbjct: 1602 SEDEKVVV--EPPEGEE--KVEKAEVKERTEEPMETEPKGAADVEKVEEKSAIDLTPIVV 1657
Query: 2232 AEDKTENEIEED 2243
EDK E + EE+
Sbjct: 1658 -EDKEEKKEEEE 1668
Score = 54 (24.1 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEE 1705
++K +AE+ +R +EP P+ G D V++ + + +P+ V ++E+ +E
Sbjct: 1615 EEKVEKAEVKERTEEPMET--EPK---GAAD--VEKVEEKSAIDLTPIVVEDKEEKKE 1665
Score = 48 (22.0 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 29/105 (27%), Positives = 43/105 (40%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEA--GDQMGVSLG 1864
I I L E I E + + + A ED K VVE G++ +
Sbjct: 1564 IKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPASEDEKV-VVEPPEGEE---KVE 1619
Query: 1865 GATVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKE 1909
A V E++ E + T P A+ E++ E D T I V++ KE
Sbjct: 1620 KAEVKERTEEPMETEPKGAADVEKVEEKSAIDLTPI---VVEDKE 1661
Score = 47 (21.6 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA VP + G + L E S
Sbjct: 1519 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS--LKEEES 1576
Query: 796 SKG 798
+G
Sbjct: 1577 IEG 1579
Score = 47 (21.6 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
Identities = 33/146 (22%), Positives = 55/146 (37%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGF-NSPNENPGELTGTKNDASVRGDHTPVSGHTLAS 1062
E KK S TPT TP N+P P G K + + + + G
Sbjct: 1525 EENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGE---K 1581
Query: 1063 KTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNE--QSRNQNN 1120
+ ++ PE + + A +S D+K + P E ++ E+ E ++ +
Sbjct: 1582 EVKSTAPETAIECTQAP--APASEDEKVVVEPPEGEEKVEKAEVK-ERTEEPMETEPKGA 1638
Query: 1121 PEV-KGEETPVSSEAPASTEAFEQEK 1145
+V K EE P E E++K
Sbjct: 1639 ADVEKVEEKSAIDLTPIVVEDKEEKK 1664
Score = 43 (20.2 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 355 EEQWTEEEFEKMCQAESSDSPK-LKEEGLEKSL 386
+E+ EEE +K ++ ++PK L +E +K++
Sbjct: 1660 KEEKKEEEEKKEVMLQNGETPKDLNDEKQKKNI 1692
Score = 42 (19.8 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 1986 VVAETVQEEEKTELSCEKQPIGSSVDDESKGP-EVE 2020
VV E + EEK E + K+ ++ E KG +VE
Sbjct: 1607 VVVEPPEGEEKVEKAEVKERTEEPMETEPKGAADVE 1642
Score = 40 (19.1 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDG 2031
E +EEEK E+ + ++DE + ++ ++ DG
Sbjct: 1662 EKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNI-ADG 1703
Score = 37 (18.1 bits), Expect = 5.9e-35, Sum P(3) = 5.9e-35
Identities = 10/60 (16%), Positives = 29/60 (48%)
Query: 1771 PWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEK 1830
P E + G+++ + V +S ++ + V + ++ + E + ++ + P L ++K
Sbjct: 1630 PMETEPKGAADVEKVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQNGETPKDLNDEKQK 1689
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 469 (170.2 bits), Expect = 6.0e-41, Sum P(3) = 6.0e-41
Identities = 99/228 (43%), Positives = 142/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY-LPPIVRLCGKLEM 64
E L S S+ N +M+L+ CNHPYL AEE T Y + + + GKL +
Sbjct: 997 EALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVL 1056
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L +LKA +HRVL FS MT++LD++ED+L +QY+Y R+DG +G R ID+FN
Sbjct: 1057 LSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNA 1116
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F+FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1117 PGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1176
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE+V A+ K+ + + + G A ++ L+ +LR
Sbjct: 1177 VTRNSVEERVTQVAKRKMMLTHLVVRPGM--GGKGANFTKQELDDILR 1222
Score = 85 (35.0 bits), Expect = 6.0e-41, Sum P(3) = 6.0e-41
Identities = 55/183 (30%), Positives = 75/183 (40%)
Query: 2090 GNMRQTVPQDLG-LPLSSSDVEE-EKIEGF-SKP--VGSEKESIASAVPLDESK---GPD 2141
G RQ V +G + L V+E E I G+ S P + E + SA+ D + P
Sbjct: 1481 GLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILKPCEPVRSALKQDVAALEAPPT 1540
Query: 2142 AEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAK 2201
++A V P A PA E+K++ S+KE +S + E K+ E +
Sbjct: 1541 GGNVDKSATTSNSVT--PATSAAPSPAPASEKGEDKDKDSEKEKDKTSAEKSEVKQ-EQE 1597
Query: 2202 AFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKTE------NEIEEDPVVNSVAVEESK 2255
A E D G V EN E G + P AE KTE E +DP V E K
Sbjct: 1598 AEE--DKKPGDVKQENPVEEAAGDTKPSD-AEVKTEVAKTEPKEETKDPEVKEEPKTEEK 1654
Query: 2256 GSE 2258
E
Sbjct: 1655 EKE 1657
Score = 76 (31.8 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 41/160 (25%), Positives = 67/160 (41%)
Query: 1128 TPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETA----PGFDIPIEK 1183
TP +S AP+ A E+ + + S D +S +K+ V E PG D+ E
Sbjct: 1555 TPATSAAPSPAPASEKGEDKDKDSEKE-KDKTSAEKS-EVKQEQEAEEDKKPG-DVKQEN 1611
Query: 1184 GVEQSGTEI---DAKVKWKNTPL-PGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLV 1239
VE++ + DA+VK + P E E PE K + + EK ++ VDD +
Sbjct: 1612 PVEEAAGDTKPSDAEVKTEVAKTEPKE------ETKDPEVKEEPKTEEKEKEKVDDKKPI 1665
Query: 1240 KELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKST 1279
D D++I G + S+ P + + +T
Sbjct: 1666 PPTTVIDDDDDDVMIVKEDGELEKPSASSPKDQKAVAAAT 1705
Score = 70 (29.7 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 28/102 (27%), Positives = 40/102 (39%)
Query: 1274 LIMKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSA 1333
LI+K E P S DVA + E P G+ S T ++V+ T P
Sbjct: 1516 LILKPCE-PVRSALKQDVA--ALEAPPTGGNVDKSATTSNSVTPATSAAPSPAPASEKGE 1572
Query: 1334 SPERSGPQNSAVGFCDKSEIPS-MEAEVAKCPSDAIVNNLLE 1374
++ + +KSE+ EAE K P D N +E
Sbjct: 1573 DKDKDSEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENPVE 1614
Score = 60 (26.2 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 2107 SDV-EEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEAD 2165
S+V +E++ E KP G K+ ++K DAEV ++ A + PE +
Sbjct: 1590 SEVKQEQEAEEDKKP-GDVKQENPVEEAAGDTKPSDAEVKTEVA-KTEPKEETKDPEVKE 1647
Query: 2166 GPASFLAAEEEKNECSDKEPV 2186
P + E+EK + DK+P+
Sbjct: 1648 EPKT---EEKEKEKVDDKKPI 1665
Score = 53 (23.7 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
Identities = 30/108 (27%), Positives = 45/108 (41%)
Query: 1777 DGSSEKDPVSSQSVLEGSKETVAEA----GDQMDISIMPEKLPEHLDIPASLATPEEKTE 1832
D EKD S++ E +E AE GD + + E + A + T KTE
Sbjct: 1577 DSEKEKDKTSAEKS-EVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSDAEVKTEVAKTE 1635
Query: 1833 GSE--KDPDSSFAAQEDPK--ESVVEAGDQMGVSLGGATVMEKSSEDL 1876
E KDP+ +E+PK E E D + TV++ +D+
Sbjct: 1636 PKEETKDPE----VKEEPKTEEKEKEKVDDKK-PIPPTTVIDDDDDDV 1678
Score = 45 (20.9 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 1808 SIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKE 1850
S+ P PAS E+K + SEK+ D + A + + K+
Sbjct: 1553 SVTPATSAAPSPAPAS-EKGEDKDKDSEKEKDKTSAEKSEVKQ 1594
Score = 45 (20.9 bits), Expect = 8.6e-37, Sum P(3) = 8.6e-37
Identities = 20/94 (21%), Positives = 32/94 (34%)
Query: 1009 QSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALK 1068
+ DKT + V+ ++ PG++ GD P KTE K
Sbjct: 1579 EKEKDKTSAEKSEVKQEQEA--EEDKKPGDVKQENPVEEAAGDTKPSDAEV---KTEVAK 1633
Query: 1069 PENKAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
E K + E ++K V + + PP
Sbjct: 1634 TEPKEETKDPEVKEEPKTEEKEKEKVDDKKPIPP 1667
Score = 43 (20.2 bits), Expect = 6.0e-41, Sum P(3) = 6.0e-41
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 263 ESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRL 298
+ D Q E A R+L R D PLPPL +R+
Sbjct: 1371 DDFDDQNGAERKAK-RRLER---RDDRPLPPLLARV 1402
Score = 43 (20.2 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 561 DPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSA 616
DP+ E+P++E E D PT + D + + G ++ SA
Sbjct: 1642 DPEVKEEPKTEEK-----EKEKVDDKKPIPPTTVIDDDDDDVMIVKEDGELEKPSA 1692
Score = 43 (20.2 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 27/113 (23%), Positives = 42/113 (37%)
Query: 1166 SVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDS 1225
SVTPA AP EKG ++ K K + E KP + +
Sbjct: 1553 SVTPATSAAPSPAPASEKGEDKDKDSEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENP 1612
Query: 1226 VEKLE-DTVDDHSLVK-ELIHRSP--DHSDMVIGNVPGNTSEDSSKMPLETPL 1274
VE+ DT + VK E+ P + D + P ++ K+ + P+
Sbjct: 1613 VEEAAGDTKPSDAEVKTEVAKTEPKEETKDPEVKEEPKTEEKEKEKVDDKKPI 1665
Score = 42 (19.8 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 37/220 (16%), Positives = 76/220 (34%)
Query: 573 LNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVA-ALNSELNTNLATA 631
L P +A +V+++ P +V SA S T S+A + A SE +
Sbjct: 1518 LKPCEPVRSALKQDVAALEAPPTGGNVDKSATTSNSVTPATSAAPSPAPASEKGEDKDKD 1577
Query: 632 XXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPE-SKSNLQ 690
++ + ++ + + G + +A G SD E +K+ +
Sbjct: 1578 SEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSDAEVKTEVAKTEPK 1637
Query: 691 SENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQS 750
E ++ ++ +++ +K + P V D V +V+
Sbjct: 1638 EETKDPEVKEEPKT----EEKEKEKVDDKKPIPPTTVIDDDD----------DDVMIVKE 1683
Query: 751 NQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVL 790
+ + P+ Q + + + G A D+ EVL
Sbjct: 1684 DGELEKPSASSPKDQKAVAAATSAATGATGKGAEDSLEVL 1723
Score = 38 (18.4 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 254 RSESEIDVFESVDKQRREEEMATWRKLIR 282
+ E E + E + + + A W KL+R
Sbjct: 1278 KEEEEEEETEIIKQDAENSDPAYWVKLLR 1306
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 455 (165.2 bits), Expect = 6.3e-41, Sum P(2) = 6.3e-41
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 995 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1054
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1055 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1114
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1115 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1174
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1175 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1231
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1232 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1290
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1291 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1350
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1351 EDRDWQDDQSDNQSDYSVASEEGDE 1375
Score = 86 (35.3 bits), Expect = 6.3e-41, Sum P(2) = 6.3e-41
Identities = 37/131 (28%), Positives = 59/131 (45%)
Query: 2118 SKPVGSEKESIASAVPLDES-KGPDAEVSSQTAIEGGGVVSIPVPE---EADGPASFLAA 2173
S P ++ + A A P ++ K + + + + EG V PE E P A+
Sbjct: 1544 STPGDTQPNTPAPAPPAEDGIKIEENSLKEEESAEGEKEVKSAAPEATVECTQPP-VPAS 1602
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVA-LENTSEGMGGPSPPLVIA 2232
E+EK + P G ++E E + + EPM+ VA +E E G P+V+
Sbjct: 1603 EDEK--VLIEPPEGEE--KVEKAEVKERTEEPMETDPKGVADVEKAEEKAAGDLIPIVV- 1657
Query: 2233 EDKTENEIEED 2243
EDK E + EE+
Sbjct: 1658 EDKEEKKEEEE 1668
Score = 53 (23.7 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEE 1705
++K +AE+ +R +EP P+ GV D V++A + P+ V ++E+ +E
Sbjct: 1615 EEKVEKAEVKERTEEPMET--DPK---GVAD--VEKAEEKAAGDLIPIVVEDKEEKKE 1665
Score = 50 (22.7 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 30/131 (22%), Positives = 49/131 (37%)
Query: 1034 ENPGELTGTKNDASVRGDHTPVSGHTLASKTEA--LKP---ENKAQAGRIENIANS--SP 1086
E E+ +A+V PV AS+ E ++P E K + ++
Sbjct: 1578 EGEKEVKSAAPEATVECTQPPVP----ASEDEKVLIEPPEGEEKVEKAEVKERTEEPMET 1633
Query: 1087 DDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKV 1146
D K + V E G IPI +++ + + E K E + E P +Q+K
Sbjct: 1634 DPKGVADVEKAEEKAAGDLIPIVVEDKEEKKEE--EEKKEVMLQNGETPKDLNDEKQKKN 1691
Query: 1147 TNTSSFVNLAD 1157
N+AD
Sbjct: 1692 IKQRFMFNIAD 1702
Score = 48 (22.0 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 28/111 (25%), Positives = 47/111 (42%)
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
AE G +++ + + E+ + A PE E ++ P A ED K + +
Sbjct: 1560 AEDGIKIEENSLKEEESAEGEKEVKSAAPEATVECTQP-P---VPASEDEKVLIEPPEGE 1615
Query: 1859 MGVSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKE 1909
V A V E++ E + T P +A+ E+ E D I + V D +E
Sbjct: 1616 EKVEK--AEVKERTEEPMETDPKGVADVEKAEEKAAGDL--IPIVVEDKEE 1662
Score = 46 (21.3 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA P + G + L E S
Sbjct: 1519 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENS--LKEEES 1576
Query: 796 SKG 798
++G
Sbjct: 1577 AEG 1579
Score = 42 (19.8 bits), Expect = 9.6e-35, Sum P(3) = 9.6e-35
Identities = 32/137 (23%), Positives = 50/137 (36%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGF-NSPNENPGELTGTKNDASVRGDHTPVSGHTLAS 1062
E KK S TPT TP N+P P G K + + + G
Sbjct: 1525 EENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENSLKEEESAEGE---K 1581
Query: 1063 KTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPE 1122
+ ++ PE + + +S D+K L +E PP + +EK + R + E
Sbjct: 1582 EVKSAAPEATVEC--TQPPVPASEDEKVL-----IE--PPEGEEKVEKAEVKERTEEPME 1632
Query: 1123 V--KGEETPVSSEAPAS 1137
KG +E A+
Sbjct: 1633 TDPKGVADVEKAEEKAA 1649
Score = 40 (19.1 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDG 2031
E +EEEK E+ + ++DE + ++ ++ DG
Sbjct: 1662 EKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNI-ADG 1703
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 506 (183.2 bits), Expect = 7.0e-41, Sum P(2) = 7.0e-41
Identities = 111/237 (46%), Positives = 154/237 (64%)
Query: 7 NLGSIGNSKGRSVHNSVMELRNICNHPYL-----SQLHAE--EV-DTLIPKHYLPPIVRL 58
++G+ NS ++ N++MELR CNHPYL ++ +E EV D L P +L +VR
Sbjct: 1109 SMGATQNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQALVRS 1168
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
GKL +LD+LLP+LKA H+VL FS M R LD++EDYL K+Y Y R+DG G R A
Sbjct: 1169 AGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAA 1228
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
ID+F++ DS F+FLL RAGG+G+NL AADT +IFD+DWNPQ DLQAQAR HRIGQ +
Sbjct: 1229 IDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKA 1288
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR--REYLESLLRE 233
V V R T + E ++ A KLG+ ++++ N S+ + ++ +E LLR+
Sbjct: 1289 VKVYRLITRNSYEREMLDKASLKLGL-DRAVLQSMSGNKESSIQQFSKKEIEDLLRK 1344
Score = 53 (23.7 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 2063 PSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVG 2122
PS + G D+++++ D+ + R + D SDVE E+ G
Sbjct: 2091 PSERKLGGGGGGASDSDSDS--DSGSSSSSRHSGSSD---DSGDSDVEREQA-ALKMCDG 2144
Query: 2123 SEKESIASAVPLDESKGPDA 2142
E+ SI S P E P++
Sbjct: 2145 DEENSILSLTPSQEGAPPES 2164
Score = 45 (20.9 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 32/141 (22%), Positives = 53/141 (37%)
Query: 534 EQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTA 593
E+ R + I AA ++ G K +E P+ + E +V++
Sbjct: 1702 ERCGRPNEQDINAEQQAADPELGEGGDYDKYSEDPEFKPATRHAKEMYEEGDSVNADGEI 1761
Query: 594 PVPDSVSPSAVKG-QSGTID----PSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQT 648
V D +P V+G SG+ D P+S+ +L + L L TA +
Sbjct: 1762 CVEDRSAPMQVEGPSSGSSDLCYWPTSS--SLTARLR-RLITAYQRSYRREQLKIEAAE- 1817
Query: 649 KGQSRKTQSGGVTPRRRGKRQ 669
KG R+ + T + RQ
Sbjct: 1818 KGDRRRRRCEQATKLKEIARQ 1838
Score = 44 (20.5 bits), Expect = 7.2e-39, Sum P(4) = 7.2e-39
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 1131 SSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAP 1175
SS S++ V + + + D ++ S+TP+ E AP
Sbjct: 2117 SSRHSGSSDDSGDSDVEREQAALKMCDGDEENSILSLTPSQEGAP 2161
Score = 42 (19.8 bits), Expect = 7.2e-39, Sum P(4) = 7.2e-39
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 254 RSESEIDVFESVDKQRREEEMATWRKLI 281
R + +I+ E D++RR E AT K I
Sbjct: 1808 REQLKIEAAEKGDRRRRRCEQATKLKEI 1835
Score = 42 (19.8 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 26/113 (23%), Positives = 43/113 (38%)
Query: 2070 RGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVG-SEKESI 2128
+ ++ GP + GGG D G SSS + G S G S+ E
Sbjct: 2085 KSKNNGPSERK---LGGGGGGASDSDSDSDSG---SSSS---SRHSGSSDDSGDSDVERE 2135
Query: 2129 ASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECS 2181
+A+ + + ++ +S + EG S+ P D P + +N CS
Sbjct: 2136 QAALKMCDGDEENSILSLTPSQEGAPPESLTDPLRVDWPKDRILINRIENLCS 2188
Score = 41 (19.5 bits), Expect = 7.2e-39, Sum P(4) = 7.2e-39
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 369 AESSDSPKLKEEGLE 383
++S D +KEEGLE
Sbjct: 2033 SQSQDPAGIKEEGLE 2047
Score = 37 (18.1 bits), Expect = 7.0e-41, Sum P(2) = 7.0e-41
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 254 RSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSR 297
R + E++ E V R ++ W K +G+ L L +R
Sbjct: 2276 RKDHELEDAEGVLHAPRRRDLPNWLKENPDYEVEGDMLELLVNR 2319
Score = 37 (18.1 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 1543 DCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALL 1583
+ L SDS M L D VG + G + + GPS L
Sbjct: 2056 EALCPSDSPAMLLSHSDSKVGIQAGWVWKKSKNNGPSERKL 2096
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 455 (165.2 bits), Expect = 8.0e-41, Sum P(2) = 8.0e-41
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 995 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1054
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1055 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1114
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1115 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1174
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1175 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1231
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1232 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1290
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1291 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1350
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1351 EDRDWQDDQSDNQSDYSVASEEGDE 1375
Score = 85 (35.0 bits), Expect = 8.0e-41, Sum P(2) = 8.0e-41
Identities = 38/131 (29%), Positives = 59/131 (45%)
Query: 2118 SKPVGSEKESIASAVPLDES-KGPDAEVSSQTAIEGGGVVSIPVPE---EADGPASFLAA 2173
S P ++ + A A P ++ K + + + ++EG V PE E P + A+
Sbjct: 1544 STPGDTQPNTPAPAPPAEDGIKIEENSLKEEESVEGEKEVKSTAPEATVECTQPPA-PAS 1602
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVA-LENTSEGMGGPSPPLVIA 2232
E+EK E V V + E KE + EPM+ VA +E E P+V+
Sbjct: 1603 EDEKVLVEPPE-VEEKVEKAEVKE---RTEEPMETEPKGVADVEKVEEKSAVDLTPIVV- 1657
Query: 2233 EDKTENEIEED 2243
EDK E + EE+
Sbjct: 1658 EDKEEKKEEEE 1668
Score = 60 (26.2 bits), Expect = 9.2e-36, Sum P(4) = 9.2e-36
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 1647 LQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEE 1705
+++K +AE+ +R +EP P+ GV D V++ + V +P+ V ++E+ +E
Sbjct: 1614 VEEKVEKAEVKERTEEPMET--EPK---GVAD--VEKVEEKSAVDLTPIVVEDKEEKKE 1665
Score = 55 (24.4 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 35/134 (26%), Positives = 52/134 (38%)
Query: 1778 GS-SEKDPVSSQSVLEGSKETVAEAGDQMD-ISIMPEKLPEHLDIPASLATPEEKTEGSE 1835
GS S K P S + T A A D I I L E + E +
Sbjct: 1534 GSPSPKTPTPSTPG-DTQPNTPAPAPPAEDGIKIEENSLKEEESVEGEKEVKSTAPEATV 1592
Query: 1836 KDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDN 1895
+ A ED E V+ ++ + A V E++ E + T P +A+ E++ E
Sbjct: 1593 ECTQPPAPASED--EKVLVEPPEVEEKVEKAEVKERTEEPMETEPKGVADVEKVEEKSAV 1650
Query: 1896 DPTGISMAVMDSKE 1909
D T I V++ KE
Sbjct: 1651 DLTPI---VVEDKE 1661
Score = 54 (24.1 bits), Expect = 5.4e-36, Sum P(3) = 5.4e-36
Identities = 35/146 (23%), Positives = 56/146 (38%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGF-NSPNENPGELTGTKNDASVRGDHTPVSGHTLAS 1062
E KK S TPT TP N+P P G K + + + V G
Sbjct: 1525 EENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENSLKEEESVEGE---K 1581
Query: 1063 KTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNE--QSRNQNN 1120
+ ++ PE + + A +S D+K L P +E ++ E+ E ++ +
Sbjct: 1582 EVKSTAPEATVEC--TQPPAPASEDEKVLVEPPEVEEKVEKAEVK-ERTEEPMETEPKGV 1638
Query: 1121 PEV-KGEETPVSSEAPASTEAFEQEK 1145
+V K EE P E E++K
Sbjct: 1639 ADVEKVEEKSAVDLTPIVVEDKEEKK 1664
Score = 43 (20.2 bits), Expect = 9.2e-36, Sum P(4) = 9.2e-36
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA P + G + L E S
Sbjct: 1519 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENS--LKEEES 1576
Query: 796 SKG 798
+G
Sbjct: 1577 VEG 1579
Score = 40 (19.1 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDG 2031
E +EEEK E+ + ++DE + ++ ++ DG
Sbjct: 1662 EKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNI-ADG 1703
Score = 40 (19.1 bits), Expect = 7.6e-35, Sum P(3) = 7.6e-35
Identities = 29/130 (22%), Positives = 47/130 (36%)
Query: 1034 ENPGELTGTKNDASVRGDHTPVSGH----TLASKTEALKPENKAQAG-RIENIANSSPDD 1088
E E+ T +A+V P L E + KA+ R E + P
Sbjct: 1578 EGEKEVKSTAPEATVECTQPPAPASEDEKVLVEPPEVEEKVEKAEVKERTEEPMETEP-- 1635
Query: 1089 KSLPMVPNLETAPPGFDI-PIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVT 1147
K + V +E D+ PI +++ + + E K E + E P +Q+K
Sbjct: 1636 KGVADVEKVEEKS-AVDLTPIVVEDKEEKKEE--EEKKEVMLQNGETPKDLNDEKQKKNI 1692
Query: 1148 NTSSFVNLAD 1157
N+AD
Sbjct: 1693 KQRFMFNIAD 1702
Score = 39 (18.8 bits), Expect = 9.6e-35, Sum P(3) = 9.6e-35
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1986 VVAETVQEEEKTELSCEKQPIGSSVDDESKG-PEVE 2020
V+ E + EEK E + K+ ++ E KG +VE
Sbjct: 1607 VLVEPPEVEEKVEKAEVKERTEEPMETEPKGVADVE 1642
Score = 37 (18.1 bits), Expect = 8.7e-36, Sum P(2) = 8.7e-36
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 2217 NTSEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESK 2255
+T P+PP AED + IEE+ + +VE K
Sbjct: 1548 DTQPNTPAPAPP---AEDGIK--IEENSLKEEESVEGEK 1581
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 455 (165.2 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 1015 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1074
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1075 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1134
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1135 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1194
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1195 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1251
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1252 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1310
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1311 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1370
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1371 EDRDWQDDQSDNQSDYSVASEEGDE 1395
Score = 85 (35.0 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 38/131 (29%), Positives = 59/131 (45%)
Query: 2118 SKPVGSEKESIASAVPLDES-KGPDAEVSSQTAIEGGGVVSIPVPE---EADGPASFLAA 2173
S P ++ + A A P ++ K + + + ++EG V PE E P + A+
Sbjct: 1564 STPGDTQPNTPAPAPPAEDGIKIEENSLKEEESVEGEKEVKSTAPEATVECTQPPA-PAS 1622
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVA-LENTSEGMGGPSPPLVIA 2232
E+EK E V V + E KE + EPM+ VA +E E P+V+
Sbjct: 1623 EDEKVLVEPPE-VEEKVEKAEVKE---RTEEPMETEPKGVADVEKVEEKSAVDLTPIVV- 1677
Query: 2233 EDKTENEIEED 2243
EDK E + EE+
Sbjct: 1678 EDKEEKKEEEE 1688
Score = 60 (26.2 bits), Expect = 9.7e-36, Sum P(4) = 9.7e-36
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 1647 LQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEE 1705
+++K +AE+ +R +EP P+ GV D V++ + V +P+ V ++E+ +E
Sbjct: 1634 VEEKVEKAEVKERTEEPMET--EPK---GVAD--VEKVEEKSAVDLTPIVVEDKEEKKE 1685
Score = 55 (24.4 bits), Expect = 4.5e-36, Sum P(3) = 4.5e-36
Identities = 35/134 (26%), Positives = 52/134 (38%)
Query: 1778 GS-SEKDPVSSQSVLEGSKETVAEAGDQMD-ISIMPEKLPEHLDIPASLATPEEKTEGSE 1835
GS S K P S + T A A D I I L E + E +
Sbjct: 1554 GSPSPKTPTPSTPG-DTQPNTPAPAPPAEDGIKIEENSLKEEESVEGEKEVKSTAPEATV 1612
Query: 1836 KDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDN 1895
+ A ED E V+ ++ + A V E++ E + T P +A+ E++ E
Sbjct: 1613 ECTQPPAPASED--EKVLVEPPEVEEKVEKAEVKERTEEPMETEPKGVADVEKVEEKSAV 1670
Query: 1896 DPTGISMAVMDSKE 1909
D T I V++ KE
Sbjct: 1671 DLTPI---VVEDKE 1681
Score = 54 (24.1 bits), Expect = 5.7e-36, Sum P(3) = 5.7e-36
Identities = 35/146 (23%), Positives = 56/146 (38%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGF-NSPNENPGELTGTKNDASVRGDHTPVSGHTLAS 1062
E KK S TPT TP N+P P G K + + + V G
Sbjct: 1545 EENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENSLKEEESVEGE---K 1601
Query: 1063 KTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNE--QSRNQNN 1120
+ ++ PE + + A +S D+K L P +E ++ E+ E ++ +
Sbjct: 1602 EVKSTAPEATVEC--TQPPAPASEDEKVLVEPPEVEEKVEKAEVK-ERTEEPMETEPKGV 1658
Query: 1121 PEV-KGEETPVSSEAPASTEAFEQEK 1145
+V K EE P E E++K
Sbjct: 1659 ADVEKVEEKSAVDLTPIVVEDKEEKK 1684
Score = 43 (20.2 bits), Expect = 9.7e-36, Sum P(4) = 9.7e-36
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA P + G + L E S
Sbjct: 1539 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENS--LKEEES 1596
Query: 796 SKG 798
+G
Sbjct: 1597 VEG 1599
Score = 40 (19.1 bits), Expect = 4.5e-36, Sum P(3) = 4.5e-36
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDG 2031
E +EEEK E+ + ++DE + ++ ++ DG
Sbjct: 1682 EKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNI-ADG 1723
Score = 40 (19.1 bits), Expect = 7.9e-35, Sum P(3) = 7.9e-35
Identities = 29/130 (22%), Positives = 47/130 (36%)
Query: 1034 ENPGELTGTKNDASVRGDHTPVSGH----TLASKTEALKPENKAQAG-RIENIANSSPDD 1088
E E+ T +A+V P L E + KA+ R E + P
Sbjct: 1598 EGEKEVKSTAPEATVECTQPPAPASEDEKVLVEPPEVEEKVEKAEVKERTEEPMETEP-- 1655
Query: 1089 KSLPMVPNLETAPPGFDI-PIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVT 1147
K + V +E D+ PI +++ + + E K E + E P +Q+K
Sbjct: 1656 KGVADVEKVEEKS-AVDLTPIVVEDKEEKKEE--EEKKEVMLQNGETPKDLNDEKQKKNI 1712
Query: 1148 NTSSFVNLAD 1157
N+AD
Sbjct: 1713 KQRFMFNIAD 1722
Score = 39 (18.8 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1986 VVAETVQEEEKTELSCEKQPIGSSVDDESKG-PEVE 2020
V+ E + EEK E + K+ ++ E KG +VE
Sbjct: 1627 VLVEPPEVEEKVEKAEVKERTEEPMETEPKGVADVE 1662
Score = 37 (18.1 bits), Expect = 9.0e-36, Sum P(2) = 9.0e-36
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 2217 NTSEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESK 2255
+T P+PP AED + IEE+ + +VE K
Sbjct: 1568 DTQPNTPAPAPP---AEDGIK--IEENSLKEEESVEGEK 1601
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 461 (167.3 bits), Expect = 8.9e-41, Sum P(2) = 8.9e-41
Identities = 122/401 (30%), Positives = 208/401 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +++ GKL +
Sbjct: 1001 EALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLML 1060
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN
Sbjct: 1061 LQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNA 1120
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1121 HGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1180
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ E K+E
Sbjct: 1181 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGE 1240
Query: 243 XXXXXXXXXXXRSES-------EIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP 295
+E+ D E D Q E ++++ K+ + + + + + +
Sbjct: 1241 NKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF-KVAQYVVREEDKIEEIE 1299
Query: 296 SRLVT-DDDLKALYEAMKI---YDAPKTGVSPNVGV-KRKGEHLGALDTQHYGRGKRARE 350
++ ++++ Y + Y+ + ++ N+G KR + + D + ++
Sbjct: 1300 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEY 1359
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 391
EE+ +E+F++ + +L+ E +K LP +++
Sbjct: 1360 SVGSEEE--DEDFDERPEGRRQSKRQLRNEK-DKPLPPLLA 1397
Score = 79 (32.9 bits), Expect = 8.9e-41, Sum P(2) = 8.9e-41
Identities = 35/138 (25%), Positives = 54/138 (39%)
Query: 1006 AKKQSSDDKTCSVTPTVE------TPPPGFNSPNEN-PGELTGTKNDASVRGDHTPVSGH 1058
+ + SS KT TP T P +P+E G T + D + + P
Sbjct: 1524 SSRASSPTKTSPTTPEASAANSPCTSKPATPAPSEKGDGIRTPLEKDEAENQEEKPEKNS 1583
Query: 1059 TLASK--TEALKPENKAQAG-RIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQS 1115
+ K TEA P G R+E P + +P VP E P ++ E+S
Sbjct: 1584 RIGEKMETEADTPSPAPSLGERLE--PRKMPLEDEVPGVPG-EMEP---ELGYRGDREKS 1637
Query: 1116 RNQNNPEVKGEETPVSSE 1133
++ P +GEE P+ +
Sbjct: 1638 ATESTPGERGEEKPMDGQ 1655
Score = 60 (26.2 bits), Expect = 3.6e-37, Sum P(3) = 3.6e-37
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPS 614
+P PDP + + S + +P+ T + + ++ P P + +PS KG G P
Sbjct: 1510 MPELMPDPSADSKRSSRASSPTKTSPTTPEASAANSPCTSKPATPAPSE-KGD-GIRTPL 1567
Query: 615 SAVAALNSE 623
A N E
Sbjct: 1568 EKDEAENQE 1576
Score = 57 (25.1 bits), Expect = 7.4e-37, Sum P(3) = 7.4e-37
Identities = 26/90 (28%), Positives = 38/90 (42%)
Query: 496 SSQPTTAFVPVAPGSQSA-SACPSTPMQP----KGRGRRI-------QSGEQVPRRRGKK 543
+S PT P P + +A S C S P P KG G R ++ E+ P + +
Sbjct: 1527 ASSPTKTS-PTTPEASAANSPCTSKPATPAPSEKGDGIRTPLEKDEAENQEEKPEKNSR- 1584
Query: 544 IGLVLPAASDDIPSPGPDPKTNEQPQSESL 573
IG + +D PSP P +P+ L
Sbjct: 1585 IGEKMETEADT-PSPAPSLGERLEPRKMPL 1613
Score = 43 (20.2 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 1304 SPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKC 1363
S +S T+ S + + N P +P + +P G +K E + E + K
Sbjct: 1525 SRASSPTKTSPTTPEASAANSPCTSKPATPAPSEKGDGIRTP--LEKDEAENQEEKPEK- 1581
Query: 1364 PSDAIVNNLLETPLDIKS 1381
++ + +ET D S
Sbjct: 1582 --NSRIGEKMETEADTPS 1597
Score = 40 (19.1 bits), Expect = 3.6e-37, Sum P(3) = 3.6e-37
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSM-SGVVDELVDEAGDHMG 1689
+ A+E+ G+R +E +DG R G +L A D G
Sbjct: 1635 EKSATESTPGERGEEKPMDGQEHRERPEGETGDLGKRAEDVKG 1677
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 473 (171.6 bits), Expect = 1.0e-40, P = 1.0e-40
Identities = 105/238 (44%), Positives = 147/238 (61%)
Query: 2 KRVEENLGSIGNSKGRS-VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
K ++ G +G +G++ + N VM+LR CNHPYL AE +L V G
Sbjct: 398 KDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFD-GAEPGPPYTTDEHL---VYNSG 453
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD++L K KA RVL FS M+R+LD++EDY F+ Y Y R+DG TS DR ID
Sbjct: 454 KMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAID 513
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
++N DS FIFLL+ RAGG+G+NL +AD VI++D+DWNPQ DLQA RAHRIGQK+ V
Sbjct: 514 EYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVK 573
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAGF-FDNNTSAEDRREYLESLLRECKKE 237
V RF T + +EE+V A KL + I G ++N + + ++ L +++ KE
Sbjct: 574 VFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKE 631
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 473 (171.6 bits), Expect = 1.0e-40, P = 1.0e-40
Identities = 105/238 (44%), Positives = 147/238 (61%)
Query: 2 KRVEENLGSIGNSKGRS-VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
K ++ G +G +G++ + N VM+LR CNHPYL AE +L V G
Sbjct: 398 KDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFD-GAEPGPPYTTDEHL---VYNSG 453
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD++L K KA RVL FS M+R+LD++EDY F+ Y Y R+DG TS DR ID
Sbjct: 454 KMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAID 513
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
++N DS FIFLL+ RAGG+G+NL +AD VI++D+DWNPQ DLQA RAHRIGQK+ V
Sbjct: 514 EYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVK 573
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAGF-FDNNTSAEDRREYLESLLRECKKE 237
V RF T + +EE+V A KL + I G ++N + + ++ L +++ KE
Sbjct: 574 VFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKE 631
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 455 (165.2 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 988 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1047
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1048 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1107
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1108 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1167
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1168 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1224
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1225 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1283
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1284 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1343
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1344 EDRDWQDDQSDNQSDYSVASEEGDE 1368
Score = 88 (36.0 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 2159 PVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVD-GAVALEN 2217
P P A GPA A E++K + P G ++E E + +A EPM+ G +E
Sbjct: 1593 PAPAPAPGPAP--APEDDKAPA--EPPEGEE--KVEKAEVKERAEEPMETESKGTTEVEK 1646
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEED 2243
E P+V+ EDK E + EE+
Sbjct: 1647 AEEKSAVDLTPIVV-EDKEEKKEEEE 1671
Score = 64 (27.6 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 41/161 (25%), Positives = 58/161 (36%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
E KK S TPT TP G PN P + ++ + +
Sbjct: 1518 EENKKMSQPGSPSPKTPTPSTP--GDTQPN-TPAPVPPAEDGIKIEENSLKEE-----ES 1569
Query: 1064 TEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEV 1123
TE K E K A + P P P AP P E + + + EV
Sbjct: 1570 TEGEK-EVKPTAPEVTVECAQPPAPAPAP-APGPAPAPEDDKAPAEPPEGEEKVEK-AEV 1626
Query: 1124 KGE-ETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDK 1163
K E P+ +E+ +TE EK S+ V+L + +DK
Sbjct: 1627 KERAEEPMETESKGTTEV---EKAEEKSA-VDLTPIVVEDK 1663
Score = 53 (23.7 bits), Expect = 6.4e-37, Sum P(3) = 6.4e-37
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEE 1705
++K +AE+ +R +EP G + V++A + V +P+ V ++E+ +E
Sbjct: 1618 EEKVEKAEVKERAEEPM-----ETESKGTTE--VEKAEEKSAVDLTPIVVEDKEEKKE 1668
Score = 50 (22.7 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA VP + G + L E S
Sbjct: 1512 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS--LKEEES 1569
Query: 796 SKG 798
++G
Sbjct: 1570 TEG 1572
Score = 50 (22.7 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 31/125 (24%), Positives = 50/125 (40%)
Query: 1764 QPSSSLAPWEAKIDGSS-EKDPVSSQSVLEGSKETVAEAGD-QMDISIMPEKLPEHLDIP 1821
QP++ AP DG E++ + + EG KE A + ++ + P P P
Sbjct: 1543 QPNTP-APVPPAEDGIKIEENSLKEEESTEGEKEVKPTAPEVTVECAQPPAPAPAPAPGP 1601
Query: 1822 ASLA----TPEEKTEGSEKDPDSSFAAQ-EDPKES-------VVEAGDQMGVSLGGATVM 1869
A P E EG EK + + E+P E+ V +A ++ V L V
Sbjct: 1602 APAPEDDKAPAEPPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPIVVE 1661
Query: 1870 EKSSE 1874
+K +
Sbjct: 1662 DKEEK 1666
Score = 48 (22.0 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 25/110 (22%), Positives = 37/110 (33%)
Query: 496 SSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSG---EQVPRRRGKKIGLVLP--- 549
S P T P PG + P+ P+ P G +I+ E+ K++ P
Sbjct: 1528 SPSPKTP-TPSTPGDTQPNT-PA-PVPPAEDGIKIEENSLKEEESTEGEKEVKPTAPEVT 1584
Query: 550 --AASDDIPSPGPDPKTNEQPQSESL--NPSGGESTATDGNVSSIPTAPV 595
A P+P P P P+ + P GE V P+
Sbjct: 1585 VECAQPPAPAPAPAPGPAPAPEDDKAPAEPPEGEEKVEKAEVKERAEEPM 1634
Score = 47 (21.6 bits), Expect = 7.8e-37, Sum P(2) = 7.8e-37
Identities = 26/139 (18%), Positives = 46/139 (33%)
Query: 661 TPRRRGKRQALGSPPISDVSAGPESKSN-LQSENNSGGLRLSKSVSMGKQDALSQELSNK 719
TP G Q P+ G + + N L+ E ++ G + K + +Q +
Sbjct: 1535 TPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESTEGEKEVKPTAPEVTVECAQPPAPA 1594
Query: 720 IQVQPCGVATSADVAGPDQKP-AEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMD 778
P D P + P E+ V + + P +S + ++D
Sbjct: 1595 PAPAPGPAPAPEDDKAPAEPPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVD 1654
Query: 779 LGNVASDTKEVLSENSSSK 797
L + + KE E K
Sbjct: 1655 LTPIVVEDKEEKKEEEEKK 1673
Score = 46 (21.3 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1988 AETVQEEEKTELSCEKQPIGSSVDDESKGP-EVE 2020
AE + EEK E + K+ ++ ESKG EVE
Sbjct: 1612 AEPPEGEEKVEKAEVKERAEEPMETESKGTTEVE 1645
Score = 42 (19.8 bits), Expect = 7.6e-35, Sum P(3) = 7.6e-35
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 739 KPA--EQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSE--NS 794
KP E +V Q P PA + + PA+ P + ++ KE E +
Sbjct: 1577 KPTAPEVTVECAQPPAPAPAPAPGPAPAPEDDKAPAEPPEGEEKVEKAEVKERAEEPMET 1636
Query: 795 SSKG 798
SKG
Sbjct: 1637 ESKG 1640
Score = 41 (19.5 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 1990 TVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEELGLPSSP 2047
+++EEE TE E +P V E +P G P PE+ P+ P
Sbjct: 1563 SLKEEESTEGEKEVKPTAPEVTVEC----AQPPAPAPAPAPG--PAPAPEDDKAPAEP 1614
Score = 41 (19.5 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 1771 PWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEK 1830
P E + G++E + +S ++ + V + ++ + E L ++ + P L+ ++K
Sbjct: 1633 PMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKKEEEEKKEVLLQNGETPKDLSDEKQK 1692
Score = 40 (19.1 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 27/137 (19%), Positives = 49/137 (35%)
Query: 1021 TVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIEN 1080
TVE P +P PG ++D + P G K E + +A+ +E
Sbjct: 1584 TVECAQPPAPAPAPAPGPAPAPEDD---KAPAEPPEGEEKVEKAEV---KERAEEP-MET 1636
Query: 1081 IANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEA 1140
+ + + + ++ P I +E E+ + EV + + E P
Sbjct: 1637 ESKGTTEVEKAEEKSAVDLTP----IVVEDKEEKKEEEEKKEVLLQ----NGETPKDLSD 1688
Query: 1141 FEQEKVTNTSSFVNLAD 1157
+Q+K N+AD
Sbjct: 1689 EKQKKNLKQRFMFNIAD 1705
Score = 38 (18.4 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1960 SSVTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEV 2019
S T E K E A D ++ E +EEEK E+ + + DE + +
Sbjct: 1638 SKGTTEVEKAEEKSAVDLTPIVVEDK--EEKKEEEEKKEVLLQNGETPKDLSDEKQKKNL 1695
Query: 2020 EPCVQMDVRGDG 2031
+ ++ DG
Sbjct: 1696 KQRFMFNI-ADG 1706
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 459 (166.6 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 122/401 (30%), Positives = 208/401 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +++ GKL +
Sbjct: 1005 EALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLML 1064
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN
Sbjct: 1065 LQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNA 1124
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1125 PGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1184
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ E K+E
Sbjct: 1185 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGE 1244
Query: 243 XXXXXXXXXXXRSES-------EIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP 295
+E+ D E D Q E ++++ K+ + + + + + +
Sbjct: 1245 NKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF-KVAQYVVREEDKIEEIE 1303
Query: 296 SRLVT-DDDLKALYEAMKI---YDAPKTGVSPNVGV-KRKGEHLGALDTQHYGRGKRARE 350
++ ++++ Y + Y+ + ++ N+G KR + + D + ++
Sbjct: 1304 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEY 1363
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 391
EE+ +E+F++ + +L+ E +K LP +++
Sbjct: 1364 SVGSEEE--DEDFDERPEGRRQSKRQLRNEK-DKPLPPLLA 1401
Score = 78 (32.5 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 34/138 (24%), Positives = 53/138 (38%)
Query: 1006 AKKQSSDDKTCSVTPTVE------TPPPGFNSPNEN-PGELTGTKNDASVRGDHTPVSGH 1058
+ + SS KT TP T P +P+E G T + + + + P
Sbjct: 1528 SSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNS 1587
Query: 1059 TLASK--TEALKPENKAQAG-RIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQS 1115
+ K TEA P G R+E P + +P VP PG+ E+S
Sbjct: 1588 RIGEKMETEADAPSPAPSLGERLE--PRKIPLEDEVPGVPGEMEPEPGY----RGDREKS 1641
Query: 1116 RNQNNPEVKGEETPVSSE 1133
++ P +GEE P+ +
Sbjct: 1642 ATESTPGERGEEKPLDGQ 1659
Score = 74 (31.1 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
Identities = 41/163 (25%), Positives = 65/163 (39%)
Query: 1079 ENIANSSPDDKSLPMVPNLETAPPGFDIPIEKH---NEQSRNQNNPEVKGEETPVSSEAP 1135
E A +SP S P P G P+EK N++ + + N + GE+ ++AP
Sbjct: 1543 EASATNSPCT-SKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRI-GEKMETEADAP 1600
Query: 1136 ASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAK 1195
+ + + + + +D+ V ME PG+ EK S TE
Sbjct: 1601 SPAPSLGER--------LEPRKIPLEDEVPGVPGEMEPEPGYRGDREK----SATESTPG 1648
Query: 1196 VKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSL 1238
+ + PL G+ +PE +T GD + K ED D L
Sbjct: 1649 ERGEEKPLDGQE-----HRERPEGET-GD-LGKREDVKGDREL 1684
Score = 63 (27.2 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPS 614
+P PDP + + S + +P+ T + + ++ P P + +PS KG+ G P
Sbjct: 1514 MPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSE-KGE-GIRTPL 1571
Query: 615 SAVAALNSE 623
A N E
Sbjct: 1572 EKEEAENQE 1580
Score = 56 (24.8 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 25/86 (29%), Positives = 36/86 (41%)
Query: 496 SSQPTTAFVPVAP-GSQSASACPSTPMQP----KGRGRRI-------QSGEQVPRRRGKK 543
+S PT P P S + S C S P P KG G R ++ E+ P + +
Sbjct: 1531 ASSPTKTS-PTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSR- 1588
Query: 544 IGLVLPAASDDIPSPGPDPKTNEQPQ 569
IG + +D PSP P +P+
Sbjct: 1589 IGEKMETEAD-APSPAPSLGERLEPR 1613
Score = 54 (24.1 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 41/154 (26%), Positives = 62/154 (40%)
Query: 1683 EAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDK-DPDSNLVV-LEDSKG 1740
E G+ G+ +P+ E E EE P +S E K++ D P +L LE K
Sbjct: 1562 EKGE--GI-RTPLEKEEAENQEEK--PEKNSRIGE-KMETEADAPSPAPSLGERLEPRKI 1615
Query: 1741 SIGDQMDCCQSGVVVPEN--LSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETV 1798
+ D++ G + PE D + ++ P E E+ P+ Q E +
Sbjct: 1616 PLEDEVPGVP-GEMEPEPGYRGDREKSATESTPGER-----GEEKPLDGQEHRERPEGET 1669
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTE 1832
+ G + D+ E P D P S EEKTE
Sbjct: 1670 GDLGKREDVKGDRELRPGPRDEPRSNGRREEKTE 1703
Score = 41 (19.5 bits), Expect = 2.3e-37, Sum P(3) = 2.3e-37
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 1592 ESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDISSE 1638
E + + E G+ + L G ++ E PE ++ ++G+++D+ +
Sbjct: 1639 EKSATESTPGERGEEKPLDGQEHRER----PEGETGDLGKREDVKGD 1681
Score = 41 (19.5 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 1304 SPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKC 1363
S +S T+ S + + N P +P + +P G +K E + E + K
Sbjct: 1529 SRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTP--LEKEEAENQEEKPEK- 1585
Query: 1364 PSDAIVNNLLETPLDIKS 1381
++ + +ET D S
Sbjct: 1586 --NSRIGEKMETEADAPS 1601
Score = 38 (18.4 bits), Expect = 4.6e-37, Sum P(3) = 4.6e-37
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFS----PRSMSGVVDELVDEAGD 1686
+ A+E+ G+R +E +DG P +G + + D GD
Sbjct: 1639 EKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGD 1681
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 455 (165.2 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 1016 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1075
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1076 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1135
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1136 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1195
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1196 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1252
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1253 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1311
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1312 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1371
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1372 EDRDWQDDQSDNQSDYSVASEEGDE 1396
Score = 87 (35.7 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 25/86 (29%), Positives = 38/86 (44%)
Query: 2159 PVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVD-GAVALEN 2217
P P GP A E ++ + P G ++E E + +A EPM+ G +E
Sbjct: 1623 PAPASGPGPTPGPAPAPEDDKAPAEPPEGEE--KVEKAEVKERAEEPMETESKGTTEVEK 1680
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEED 2243
E P+V+ EDK E + EE+
Sbjct: 1681 AEEKSAVDLTPIVV-EDKEEKKEEEE 1705
Score = 65 (27.9 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 40/162 (24%), Positives = 58/162 (35%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
E KK S TPT TP G PN P + ++ + + T K
Sbjct: 1546 EENKKMSQPGSPSPKTPTPSTP--GDTQPN-TPAPVPPAEDGIKIEENSLKEEESTEGEK 1602
Query: 1064 TEALKPENKAQAGRIENIANSSPDDKSLP-MVPNLETAPPGFDIPIEKHNEQSRNQNNPE 1122
+KP +P S P P AP P E + + + E
Sbjct: 1603 E--VKPTAPEVTVECAQPPAPAPAPASGPGPTPGPAPAPEDDKAPAEPPEGEEKVEK-AE 1659
Query: 1123 VKGE-ETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDK 1163
VK E P+ +E+ +TE EK S+ V+L + +DK
Sbjct: 1660 VKERAEEPMETESKGTTEV---EKAEEKSA-VDLTPIVVEDK 1697
Score = 53 (23.7 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEE 1705
++K +AE+ +R +EP G + V++A + V +P+ V ++E+ +E
Sbjct: 1652 EEKVEKAEVKERAEEPM-----ETESKGTTE--VEKAEEKSAVDLTPIVVEDKEEKKE 1702
Score = 50 (22.7 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA VP + G + L E S
Sbjct: 1540 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENS--LKEEES 1597
Query: 796 SKG 798
++G
Sbjct: 1598 TEG 1600
Score = 49 (22.3 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 1990 TVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEELGLPSSP 2047
+++EEE TE E +P V E P G P PE+ P+ P
Sbjct: 1591 SLKEEESTEGEKEVKPTAPEVTVECAQPPAPAPAPASGPGPTPGPAPAPEDDKAPAEP 1648
Score = 46 (21.3 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1988 AETVQEEEKTELSCEKQPIGSSVDDESKGP-EVE 2020
AE + EEK E + K+ ++ ESKG EVE
Sbjct: 1646 AEPPEGEEKVEKAEVKERAEEPMETESKGTTEVE 1679
Score = 43 (20.2 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 27/140 (19%), Positives = 48/140 (34%)
Query: 1018 VTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGR 1077
VT PP +P PG G + D P K E + + +A+
Sbjct: 1611 VTVECAQPPAPAPAPASGPGPTPGPA--PAPEDDKAPAEPPEGEEKVEKAEVKERAEEP- 1667
Query: 1078 IENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPAS 1137
+E + + + + ++ P I +E E+ + EV + + E P
Sbjct: 1668 METESKGTTEVEKAEEKSAVDLTP----IVVEDKEEKKEEEEKKEVLLQ----NGETPKD 1719
Query: 1138 TEAFEQEKVTNTSSFVNLAD 1157
+Q+K N+AD
Sbjct: 1720 LSDEKQKKNLKQRFMFNIAD 1739
Score = 42 (19.8 bits), Expect = 9.4e-36, Sum P(3) = 9.4e-36
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 1811 PEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES--VVEAGDQMGVSLGGATV 1868
P PE PA EEK E +E + + + K + V +A ++ V L V
Sbjct: 1635 PAPAPEDDKAPAEPPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPIVV 1694
Query: 1869 MEKSSE 1874
+K +
Sbjct: 1695 EDKEEK 1700
Score = 41 (19.5 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 1771 PWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEK 1830
P E + G++E + +S ++ + V + ++ + E L ++ + P L+ ++K
Sbjct: 1667 PMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKKEEEEKKEVLLQNGETPKDLSDEKQK 1726
Score = 41 (19.5 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 14/48 (29%), Positives = 17/48 (35%)
Query: 549 PA-ASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPV 595
PA AS P+PGP P + P GE V P+
Sbjct: 1623 PAPASGPGPTPGPAPAPEDD--KAPAEPPEGEEKVEKAEVKERAEEPM 1668
Score = 39 (18.8 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 27/145 (18%), Positives = 49/145 (33%)
Query: 661 TPRRRGKRQALGSPPISDVSAGPESKSN-LQSENNSGGLRLSK------SVSMGKQDALS 713
TP G Q P+ G + + N L+ E ++ G + K +V + A +
Sbjct: 1563 TPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESTEGEKEVKPTAPEVTVECAQPPAPA 1622
Query: 714 QELSNKIQVQPCGVATSADVAGPDQKP-AEQSVRVVQSNQPINLPATHDSSSQPSGSTPA 772
++ P D P + P E+ V + + P +S
Sbjct: 1623 PAPASGPGPTPGPAPAPEDDKAPAEPPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAE 1682
Query: 773 QVPSMDLGNVASDTKEVLSENSSSK 797
+ ++DL + + KE E K
Sbjct: 1683 EKSAVDLTPIVVEDKEEKKEEEEKK 1707
Score = 38 (18.4 bits), Expect = 2.5e-35, Sum P(3) = 2.5e-35
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1960 SSVTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEV 2019
S T E K E A D ++ E +EEEK E+ + + DE + +
Sbjct: 1672 SKGTTEVEKAEEKSAVDLTPIVVEDK--EEKKEEEEKKEVLLQNGETPKDLSDEKQKKNL 1729
Query: 2020 EPCVQMDVRGDG 2031
+ ++ DG
Sbjct: 1730 KQRFMFNI-ADG 1740
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 459 (166.6 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 122/401 (30%), Positives = 208/401 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +++ GKL +
Sbjct: 1064 EALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLML 1123
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN
Sbjct: 1124 LQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNA 1183
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1184 PGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1243
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ E K+E
Sbjct: 1244 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGE 1303
Query: 243 XXXXXXXXXXXRSES-------EIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP 295
+E+ D E D Q E ++++ K+ + + + + + +
Sbjct: 1304 NKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF-KVAQYVVREEDKIEEIE 1362
Query: 296 SRLVT-DDDLKALYEAMKI---YDAPKTGVSPNVGV-KRKGEHLGALDTQHYGRGKRARE 350
++ ++++ Y + Y+ + ++ N+G KR + + D + ++
Sbjct: 1363 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEY 1422
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 391
EE+ +E+F++ + +L+ E +K LP +++
Sbjct: 1423 SVGSEEE--DEDFDERPEGRRQSKRQLRNEK-DKPLPPLLA 1460
Score = 78 (32.5 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 34/138 (24%), Positives = 53/138 (38%)
Query: 1006 AKKQSSDDKTCSVTPTVE------TPPPGFNSPNEN-PGELTGTKNDASVRGDHTPVSGH 1058
+ + SS KT TP T P +P+E G T + + + + P
Sbjct: 1587 SSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNS 1646
Query: 1059 TLASK--TEALKPENKAQAG-RIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQS 1115
+ K TEA P G R+E P + +P VP PG+ E+S
Sbjct: 1647 RIGEKMETEADAPSPAPSLGERLE--PRKIPLEDEVPGVPGEMEPEPGY----RGDREKS 1700
Query: 1116 RNQNNPEVKGEETPVSSE 1133
++ P +GEE P+ +
Sbjct: 1701 ATESTPGERGEEKPLDGQ 1718
Score = 74 (31.1 bits), Expect = 5.3e-40, Sum P(2) = 5.3e-40
Identities = 41/163 (25%), Positives = 65/163 (39%)
Query: 1079 ENIANSSPDDKSLPMVPNLETAPPGFDIPIEKH---NEQSRNQNNPEVKGEETPVSSEAP 1135
E A +SP S P P G P+EK N++ + + N + GE+ ++AP
Sbjct: 1602 EASATNSPCT-SKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRI-GEKMETEADAP 1659
Query: 1136 ASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAK 1195
+ + + + + +D+ V ME PG+ EK S TE
Sbjct: 1660 SPAPSLGER--------LEPRKIPLEDEVPGVPGEMEPEPGYRGDREK----SATESTPG 1707
Query: 1196 VKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSL 1238
+ + PL G+ +PE +T GD + K ED D L
Sbjct: 1708 ERGEEKPLDGQE-----HRERPEGET-GD-LGKREDVKGDREL 1743
Score = 63 (27.2 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPS 614
+P PDP + + S + +P+ T + + ++ P P + +PS KG+ G P
Sbjct: 1573 MPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSE-KGE-GIRTPL 1630
Query: 615 SAVAALNSE 623
A N E
Sbjct: 1631 EKEEAENQE 1639
Score = 56 (24.8 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 25/86 (29%), Positives = 36/86 (41%)
Query: 496 SSQPTTAFVPVAP-GSQSASACPSTPMQP----KGRGRRI-------QSGEQVPRRRGKK 543
+S PT P P S + S C S P P KG G R ++ E+ P + +
Sbjct: 1590 ASSPTKTS-PTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSR- 1647
Query: 544 IGLVLPAASDDIPSPGPDPKTNEQPQ 569
IG + +D PSP P +P+
Sbjct: 1648 IGEKMETEAD-APSPAPSLGERLEPR 1672
Score = 54 (24.1 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 41/154 (26%), Positives = 62/154 (40%)
Query: 1683 EAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDK-DPDSNLVV-LEDSKG 1740
E G+ G+ +P+ E E EE P +S E K++ D P +L LE K
Sbjct: 1621 EKGE--GI-RTPLEKEEAENQEEK--PEKNSRIGE-KMETEADAPSPAPSLGERLEPRKI 1674
Query: 1741 SIGDQMDCCQSGVVVPEN--LSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETV 1798
+ D++ G + PE D + ++ P E E+ P+ Q E +
Sbjct: 1675 PLEDEVPGVP-GEMEPEPGYRGDREKSATESTPGER-----GEEKPLDGQEHRERPEGET 1728
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTE 1832
+ G + D+ E P D P S EEKTE
Sbjct: 1729 GDLGKREDVKGDRELRPGPRDEPRSNGRREEKTE 1762
Score = 41 (19.5 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 1592 ESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDISSE 1638
E + + E G+ + L G ++ E PE ++ ++G+++D+ +
Sbjct: 1698 EKSATESTPGERGEEKPLDGQEHRER----PEGETGDLGKREDVKGD 1740
Score = 41 (19.5 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 1304 SPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKC 1363
S +S T+ S + + N P +P + +P G +K E + E + K
Sbjct: 1588 SRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTP--LEKEEAENQEEKPEK- 1644
Query: 1364 PSDAIVNNLLETPLDIKS 1381
++ + +ET D S
Sbjct: 1645 --NSRIGEKMETEADAPS 1660
Score = 38 (18.4 bits), Expect = 5.2e-37, Sum P(3) = 5.2e-37
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFS----PRSMSGVVDELVDEAGD 1686
+ A+E+ G+R +E +DG P +G + + D GD
Sbjct: 1698 EKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGD 1740
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 460 (167.0 bits), Expect = 3.0e-40, Sum P(2) = 3.0e-40
Identities = 122/401 (30%), Positives = 208/401 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +++ GKL +
Sbjct: 1003 EALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLML 1062
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN
Sbjct: 1063 LQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNA 1122
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1123 PGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1182
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ E K+E
Sbjct: 1183 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGE 1242
Query: 243 XXXXXXXXXXXRSES-------EIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP 295
+E+ D E D Q E ++++ K+ + + + + + +
Sbjct: 1243 NKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF-KVAQYVVREEDKIEEIE 1301
Query: 296 SRLVT-DDDLKALYEAMKI---YDAPKTGVSPNVGV-KRKGEHLGALDTQHYGRGKRARE 350
++ ++++ Y + Y+ + ++ N+G KR + + D + ++
Sbjct: 1302 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEY 1361
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 391
EE+ +E+F++ + +L+ E +K LP +++
Sbjct: 1362 SVGSEEE--DEDFDERPEGRRQSKRQLRNEK-DKPLPPLLA 1399
Score = 75 (31.5 bits), Expect = 3.0e-40, Sum P(2) = 3.0e-40
Identities = 35/137 (25%), Positives = 53/137 (38%)
Query: 1006 AKKQSSDDKTCSVTPTVE------TPPPGFNSPNEN-PGELTGTKNDASVRGDHTPVSGH 1058
+ + SS KT TP T P +P+E G T + D + P
Sbjct: 1526 SSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGDGSRTPLEKDEVENQEEKPEKNR 1585
Query: 1059 TLAS-KTEALKPENKAQAG-RIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSR 1116
T +TEA P G R+E S ++ +P VP PG+ E+S
Sbjct: 1586 TGEKIETEADAPSPAPSLGERLEPRKISLEEE--VPGVPGEMEPEPGY----RGDREKSA 1639
Query: 1117 NQNNPEVKGEETPVSSE 1133
++ P +GEE P+ +
Sbjct: 1640 TESTPGERGEEKPLDGQ 1656
Score = 62 (26.9 bits), Expect = 2.2e-37, Sum P(3) = 2.2e-37
Identities = 29/92 (31%), Positives = 38/92 (41%)
Query: 496 SSQPTTAFVPVAP-GSQSASACPSTPMQP----KGRGRR-------IQSGEQVPR--RRG 541
+S PT P P S + S C S P P KG G R +++ E+ P R G
Sbjct: 1529 ASSPTKTS-PTTPEASATNSPCTSKPATPAPSEKGDGSRTPLEKDEVENQEEKPEKNRTG 1587
Query: 542 KKIGLVLPAASDDIPSPGPDPKTNEQPQSESL 573
+KI D PSP P +P+ SL
Sbjct: 1588 EKI-----ETEADAPSPAPSLGERLEPRKISL 1614
Score = 61 (26.5 bits), Expect = 8.8e-39, Sum P(2) = 8.8e-39
Identities = 32/130 (24%), Positives = 51/130 (39%)
Query: 1079 ENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVK--GEETPVSSEAPA 1136
E A +SP S P P G P+EK +E + PE GE+ ++AP+
Sbjct: 1541 EASATNSPCT-SKPATPAPSEKGDGSRTPLEK-DEVENQEEKPEKNRTGEKIETEADAPS 1598
Query: 1137 STEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKV 1196
+ + + +S +++ V ME PG+ EK S TE
Sbjct: 1599 PAPSLGER--------LEPRKISLEEEVPGVPGEMEPEPGYRGDREK----SATESTPGE 1646
Query: 1197 KWKNTPLPGE 1206
+ + PL G+
Sbjct: 1647 RGEEKPLDGQ 1656
Score = 58 (25.5 bits), Expect = 2.6e-38, Sum P(3) = 2.6e-38
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPS 614
+P PDP + + S + +P+ T + + ++ P P + +PS KG G+ P
Sbjct: 1512 MPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSE-KGD-GSRTPL 1569
Query: 615 SAVAALNSE 623
N E
Sbjct: 1570 EKDEVENQE 1578
Score = 54 (24.1 bits), Expect = 2.6e-38, Sum P(3) = 2.6e-38
Identities = 31/135 (22%), Positives = 49/135 (36%)
Query: 1993 EEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEELGLPSSPMVVXX 2052
E E E EK G ++ E+ P P + G+ + P + E +P P +
Sbjct: 1573 EVENQEEKPEKNRTGEKIETEADAPSPAPSL-----GERLEPRKISLEEEVPGVPGEMEP 1627
Query: 2053 XXXXXXXXXXPSASSIP--RGESK---G------PDAEANNI---IDAEGGGNMRQTVPQ 2098
+ S P RGE K G P+ E ++ D +G +R P+
Sbjct: 1628 EPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPPR 1687
Query: 2099 DLGLPLSSSDVEEEK 2113
D P + + EK
Sbjct: 1688 DEPRPNGRREEKAEK 1702
Score = 54 (24.1 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
Identities = 36/146 (24%), Positives = 48/146 (32%)
Query: 1156 ADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDA-KVKWKNTPLPGEAIVAGIEV 1214
AD + S T T P + T + K TPL + + E
Sbjct: 1521 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGDGSRTPLEKDEVENQEE- 1579
Query: 1215 FKPENKTDGDSVEKLEDTVDDH-SLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETP 1273
KPE G+ +E D SL + L R + V G VPG +
Sbjct: 1580 -KPEKNRTGEKIETEADAPSPAPSLGERLEPRKISLEEEVPG-VPGEMEPEPGYRGDREK 1637
Query: 1274 LIMKSTEGPSVSMKADDVADHSRETP 1299
+ST G K D +H RE P
Sbjct: 1638 SATESTPGERGEEKPLDGQEH-RERP 1662
Score = 50 (22.7 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 16/80 (20%), Positives = 32/80 (40%)
Query: 1304 SPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKC 1363
S +S T+ S + + N P +P + +P G + +K E+ + E + K
Sbjct: 1527 SRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGDGSRTP--LEKDEVENQEEKPEKN 1584
Query: 1364 PSDAIVNNLLETPLDIKSIG 1383
+ + + P S+G
Sbjct: 1585 RTGEKIETEADAPSPAPSLG 1604
Score = 44 (20.5 bits), Expect = 5.4e-37, Sum P(2) = 5.4e-37
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 1821 PASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPP 1880
PA+ A P EK +GS + ++ K G+++ + E L
Sbjct: 1553 PATPA-PSEKGDGSRTPLEKDEVENQEEKPEKNRTGEKIETEADAPSPAPSLGERLEPRK 1611
Query: 1881 LSLANEEEMIEG 1892
+SL E + G
Sbjct: 1612 ISLEEEVPGVPG 1623
Score = 41 (19.5 bits), Expect = 2.2e-37, Sum P(3) = 2.2e-37
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 1592 ESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDISSE 1638
E + + E G+ + L G ++ E PE ++ ++G+++D+ +
Sbjct: 1636 EKSATESTPGERGEEKPLDGQEHRER----PEGETGDLGKREDVKGD 1678
Score = 38 (18.4 bits), Expect = 4.6e-37, Sum P(3) = 4.6e-37
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFS----PRSMSGVVDELVDEAGD 1686
+ A+E+ G+R +E +DG P +G + + D GD
Sbjct: 1636 EKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGD 1678
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 470 (170.5 bits), Expect = 3.8e-40, Sum P(5) = 3.8e-40
Identities = 104/233 (44%), Positives = 143/233 (61%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVRLCGKLE 63
G + ++ N++MELR CNHPYL E++ + P L +++ GKL
Sbjct: 1224 GQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLV 1283
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 1284 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1343
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V + R
Sbjct: 1344 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYR 1403
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 233
T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1404 LITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1456
Score = 81 (33.6 bits), Expect = 3.8e-40, Sum P(5) = 3.8e-40
Identities = 40/182 (21%), Positives = 69/182 (37%)
Query: 2028 RGDGIVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAE 2087
RG VP +G +P V+ + E ++ + E
Sbjct: 2125 RGASTVPPLNTLAMGFGQTPPVISSAHVHEEKAMEQAEGKAEECEHSPAKERSDGKEEEE 2184
Query: 2088 GGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQ 2147
G + Q+ + SS E + +EG + P GS+ S + +E K D + S +
Sbjct: 2185 EAGGAKDG-KQECEVEASSVKGELKGVEGSADP-GSKSVSEKGSEEDEEEKLEDDDKSEE 2242
Query: 2148 TAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMD 2207
++ G VS + + AS A +E + E +SV+Q+ + A +F P D
Sbjct: 2243 SSQPEAGAVSRGKTFDEESNASLSTARDETRDGFYMEDGDASVAQLLHERTFAFSFWPKD 2302
Query: 2208 VV 2209
V
Sbjct: 2303 RV 2304
Score = 59 (25.8 bits), Expect = 3.8e-40, Sum P(5) = 3.8e-40
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEP 2021
V + D+K AE +L GG E +E+E E + P +D+ + P +
Sbjct: 1811 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRAPFKDEIDEFANSPAEDK 1869
Query: 2022 CVQMDVRGDGIVPETVPEELG 2042
M+V G E+ ELG
Sbjct: 1870 EESMEVHSSGKHSES-NAELG 1889
Score = 58 (25.5 bits), Expect = 6.3e-36, Sum P(6) = 6.3e-36
Identities = 52/240 (21%), Positives = 86/240 (35%)
Query: 1500 ALDKTE-IATSCDTASLDDSHDNGNVEVLCGGTGDKKADCKMEPDCLVAS-DSVNMELVP 1557
A+++ E A C+ + + D E GG D K +C++E + V P
Sbjct: 2157 AMEQAEGKAEECEHSPAKERSDGKEEEEEAGGAKDGKQECEVEASSVKGELKGVEGSADP 2216
Query: 1558 RDFGVGRRDGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEG 1617
V + + + + SS + A + DE L D
Sbjct: 2217 GSKSVSEKGSEEDEEEKLEDDDKSEESSQPE--AGAVSRGKTFDEESNASLSTARDETRD 2274
Query: 1618 GVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVV 1677
G + E ++ + + E F S +D+ + D I E + G P +
Sbjct: 2275 GFYM-EDGDASVAQ---LLHERTFAFSFWPKDRVMINRL-DNICEAVLKGKWPVNRR--- 2326
Query: 1678 DELVDEAGDHMGVSHSPVHVVEREKS-EELGLPSLSSATKEEKIDGS--LDKDPDSNLVV 1734
++ D G G S V +++S EL + S +S + E I S L KD NL V
Sbjct: 2327 -QMFDFQGLVPGYPPSAVDSPLQKRSFAELSMVSQASISASEDITTSPQLSKDDALNLSV 2385
Score = 55 (24.4 bits), Expect = 2.2e-36, Sum P(5) = 2.2e-36
Identities = 44/192 (22%), Positives = 69/192 (35%)
Query: 2042 GLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLG 2101
GL ++P+ + E KG D E N D+E TV
Sbjct: 2803 GLLNNPLSAATGNTTTASSQGEPEDGTSKAEEKGNDNEDENR-DSE---KSTDTV----- 2853
Query: 2102 LPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIP-V 2160
S++D + + P +A L + P S G G +++P
Sbjct: 2854 ---SAADSANGSVGAATAPAALPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGF 2910
Query: 2161 P-----EEADGPASFLAAEE-EKNECSDKEPV-GSSVSQ-----IESK--EPEAKAFEPM 2206
P + A G + AA++ E C D E + GS + +ES E E E +
Sbjct: 2911 PALAGLQNAVGTSEEKAADKAEGGPCKDGETLEGSDAEENLDKTVESSILEDEVAQGEEL 2970
Query: 2207 DVVDGAVALENT 2218
D ++G +ENT
Sbjct: 2971 DSLEGGDEIENT 2982
Score = 54 (24.1 bits), Expect = 3.9e-36, Sum P(6) = 3.9e-36
Identities = 31/135 (22%), Positives = 50/135 (37%)
Query: 650 GQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQ 709
GQ+ S + QA G + S E + E +GG +K GKQ
Sbjct: 2141 GQTPPVISSAHVHEEKAMEQAEGKAEECEHSPAKERSDGKEEEEEAGG---AKD---GKQ 2194
Query: 710 DALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGS 769
+ + S K +++ GV SAD P K + + + + SSQP
Sbjct: 2195 ECEVEASSVKGELK--GVEGSAD---PGSKSVSEKGSEEDEEEKLEDDDKSEESSQPEAG 2249
Query: 770 TPAQVPSMDLGNVAS 784
++ + D + AS
Sbjct: 2250 AVSRGKTFDEESNAS 2264
Score = 52 (23.4 bits), Expect = 1.3e-35, Sum P(6) = 1.3e-35
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEE 1887
+E+++G E++ ++ A++ +E VEA G G + S+ ++ S +EE
Sbjct: 2174 KERSDGKEEEEEAG-GAKDGKQECEVEASSVKGELKGVEGSADPGSKSVSEKG-SEEDEE 2231
Query: 1888 EMIEGFD 1894
E +E D
Sbjct: 2232 EKLEDDD 2238
Score = 51 (23.0 bits), Expect = 1.8e-34, Sum P(7) = 1.8e-34
Identities = 27/118 (22%), Positives = 42/118 (35%)
Query: 1084 SSPDDKSLPMVPNLETAPPGFDI--PI--EKHNEQSRNQNNPEVKGEETPVSSEAPASTE 1139
S ++ VP L T GF P+ H + + E K EE S S
Sbjct: 2120 SFAQNRGASTVPPLNTLAMGFGQTPPVISSAHVHEEKAMEQAEGKAEECEHSPAKERSDG 2179
Query: 1140 AFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVK 1197
E+E+ ++ + SV ++ G P K V + G+E D + K
Sbjct: 2180 KEEEEEAGGAKDGKQECEVEAS----SVKGELKGVEGSADPGSKSVSEKGSEEDEEEK 2233
Score = 50 (22.7 bits), Expect = 2.2e-36, Sum P(5) = 2.2e-36
Identities = 27/115 (23%), Positives = 49/115 (42%)
Query: 518 STPMQPKGRGRRIQ-SGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
S P Q + R R+++ E+ +RR + +V + S N Q + L+ +
Sbjct: 2384 SVPRQRRRRRRKVEIEAERAAKRRNL-MEMVAQLRESQVVSE------NGQEKVVDLSKA 2436
Query: 577 GGESTATDGNVSSIPTAPVPDSVS-P--SAVKGQSGTIDPSSAVAALNSELNTNL 628
E+T++ N SS+ + + +VS P A K Q + + LN +L
Sbjct: 2437 SREATSSTSNFSSLTSKFILPNVSTPVSDAFKSQMELLQAGLSRTPTRHMLNGSL 2491
Score = 47 (21.6 bits), Expect = 8.1e-35, Sum P(6) = 8.1e-35
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 1818 LDIPASLATPEEKTEGSEKDP-DSSFAAQEDPKESVVEAGD-QMGVSLGGATVMEKSSED 1875
L+ P S AT T S+ +P D + A+E ++ E D + A S
Sbjct: 2805 LNNPLSAATGNTTTASSQGEPEDGTSKAEEKGNDNEDENRDSEKSTDTVSAADSANGSVG 2864
Query: 1876 LATPPLSL 1883
AT P +L
Sbjct: 2865 AATAPAAL 2872
Score = 47 (21.6 bits), Expect = 8.1e-35, Sum P(6) = 8.1e-35
Identities = 43/176 (24%), Positives = 67/176 (38%)
Query: 1707 GLPSLSSATKEEKIDGSLDKDPDS----NLVVLEDS-KGSIGDQMDCCQSGVVVPENLSD 1761
G P ++ EEK + + D++ DS + V DS GS+G + +P N
Sbjct: 2823 GEPEDGTSKAEEKGNDNEDENRDSEKSTDTVSAADSANGSVG----AATAPAALPSNPLA 2878
Query: 1762 FCQPS--SSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLD 1819
F P S++AP S P L G A AG Q + EK + +
Sbjct: 2879 F-NPFLLSTMAP--GLFYPSMFLPPGLGGLTLPGFP---ALAGLQNAVGTSEEKAADKAE 2932
Query: 1820 IPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSED 1875
E EGS+ + + + E V G+++ SL G +E + D
Sbjct: 2933 --GGPCKDGETLEGSDAEENLDKTVESSILEDEVAQGEELD-SLEGGDEIENTGND 2985
Score = 46 (21.3 bits), Expect = 3.8e-40, Sum P(5) = 3.8e-40
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ K+ L GAD+ E V +PE
Sbjct: 1739 RQEVIGDQAEKI--LEGADSSEADVWIPE 1765
Score = 45 (20.9 bits), Expect = 3.8e-40, Sum P(5) = 3.8e-40
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R ++ S Y+ Q TE++ E +C+A
Sbjct: 1606 YGWG-RWTDILSHGRYKRQLTEQDVETICRA 1635
Score = 44 (20.5 bits), Expect = 2.2e-36, Sum P(5) = 2.2e-36
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 664 RRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQ 723
RRG+R P S+++ + + + S + L L S+ G Q L N +Q
Sbjct: 2705 RRGRR------PKSEIARAAAAAAAVASTSGINPL-LVNSLFAGMDLTSLQNLQNLQSLQ 2757
Query: 724 -------PCGVATSADVAGPDQKPA 741
P G+AT+A G + PA
Sbjct: 2758 LAGLMGFPPGLATAATAGGDAKSPA 2782
Score = 43 (20.2 bits), Expect = 2.8e-36, Sum P(5) = 2.8e-36
Identities = 20/88 (22%), Positives = 34/88 (38%)
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPP-LVI 2231
AE + EC S + E +E + A +++ +G+ G + P
Sbjct: 2161 AEGKAEECEHSPAKERSDGKEEEEEAGGAKDGKQECEVEASSVKGELKGVEGSADPGSKS 2220
Query: 2232 AEDKTENEIEEDPVVNSVAVEESKGSEA 2259
+K E EE+ + + EES EA
Sbjct: 2221 VSEKGSEEDEEEKLEDDDKSEESSQPEA 2248
Score = 43 (20.2 bits), Expect = 3.9e-36, Sum P(6) = 3.9e-36
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 1126 EETPVSSEAPASTEAFEQE 1144
+ TP+S+E T+AFE++
Sbjct: 2519 KRTPLSAEDAEVTKAFEED 2537
Score = 43 (20.2 bits), Expect = 3.9e-36, Sum P(6) = 3.9e-36
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 1810 MPEKLPEHLDIP-ASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATV 1868
MP +P++ D+ +S P++K ++P+ +E V + G +GGA
Sbjct: 2594 MPSYVPKNTDVLFSSFQKPKQKRHRC-RNPNKLDINTLTGEERVPVVNKRNGKKMGGA-- 2650
Query: 1869 MEKSSEDL 1876
M +DL
Sbjct: 2651 MAPPMKDL 2658
Score = 43 (20.2 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 576 SGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNL 628
S ++ T I T P+ + SP G +DP + + +N E T L
Sbjct: 2524 SAEDAEVTKAFEEDIETPPIRNIPSP-------GQLDPDTRIPVINLEDGTRL 2569
Score = 42 (19.8 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 534 EQVP---RRRGKKIGLVLPAASDDIP 556
E+VP +R GKK+G + D+P
Sbjct: 2634 ERVPVVNKRNGKKMGGAMAPPMKDLP 2659
Score = 40 (19.1 bits), Expect = 3.7e-35, Sum P(5) = 3.7e-35
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1380 KSIGGPIVSMKAADVADADHPLETAVE 1406
K+ GGP + + +DA+ L+ VE
Sbjct: 2930 KAEGGPCKDGETLEGSDAEENLDKTVE 2956
Score = 39 (18.8 bits), Expect = 1.8e-34, Sum P(7) = 1.8e-34
Identities = 25/108 (23%), Positives = 43/108 (39%)
Query: 1640 AFGSSL-VLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSH--SPVH 1696
AF S + +LQ S ++ VDG P + V E D + +SH +P+
Sbjct: 2466 AFKSQMELLQAGLSRTPTRHMLNGSLVDGEPPMKRRRGRRKNV-EGLDLLFMSHKRTPLS 2524
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGD 1744
+ E ++ + + G LD D ++ LED +G+
Sbjct: 2525 AEDAEVTKAFEEDIETPPIRNIPSPGQLDPDTRIPVINLEDGTRLVGE 2572
Score = 38 (18.4 bits), Expect = 1.3e-35, Sum P(6) = 1.3e-35
Identities = 24/85 (28%), Positives = 32/85 (37%)
Query: 1335 PERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDAIVNNLLETPL----DIKSIGG--PIVS 1388
P G S G KSEI A A S + +N LL L D+ S+ + S
Sbjct: 2696 PVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQNLQNLQS 2755
Query: 1389 MKAADVADADHPLETAVELGSPVNS 1413
++ A + L TA G S
Sbjct: 2756 LQLAGLMGFPPGLATAATAGGDAKS 2780
Score = 37 (18.1 bits), Expect = 6.5e-38, Sum P(5) = 6.5e-38
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 1759 LSD---FCQPSSSLAPW 1772
LSD CQPS L W
Sbjct: 2064 LSDRLKLCQPSLDLPEW 2080
Score = 37 (18.1 bits), Expect = 6.3e-36, Sum P(6) = 6.3e-36
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 823 KACTNASKSKATLPALDSITEPYTGSTNTEGISNTIHHV 861
+ C +K + P L S+ EP T E S T++ +
Sbjct: 2014 RVCRMPAKPEDEPPDLASLIEPIT----EERASRTLYRI 2048
Score = 37 (18.1 bits), Expect = 8.3e-34, Sum P(6) = 8.3e-34
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 1498 GIALDKTEIAT-SCDTASLDDSHDNGNVEVLCGGTG--DKKADCKMEPDCLVASDSVN 1552
G+ + AT + TAS ++G + G D+ D + D + A+DS N
Sbjct: 2803 GLLNNPLSAATGNTTTASSQGEPEDGTSKAEEKGNDNEDENRDSEKSTDTVSAADSAN 2860
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 468 (169.8 bits), Expect = 4.5e-40, Sum P(5) = 4.5e-40
Identities = 107/245 (43%), Positives = 149/245 (60%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHY 51
+E+N + G++ + N++MELR CNHPYL E++ +T P
Sbjct: 1172 LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQ 1231
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 1232 LQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVR 1291
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 1292 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1351
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLE 228
RIGQ + V + R T + E ++ A KLG+ QS++ N + ++ +E
Sbjct: 1352 RIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIE 1411
Query: 229 SLLRE 233
LLR+
Sbjct: 1412 DLLRK 1416
Score = 87 (35.7 bits), Expect = 7.0e-40, Sum P(5) = 7.0e-40
Identities = 47/183 (25%), Positives = 71/183 (38%)
Query: 2028 RGDGIVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAE 2087
RG G P P LG +P A + R S+ P+ + +AE
Sbjct: 2085 RGAGGAPALNPLALGFGQTPAATPAAPGQEDKAGAAEAKA--REASEKPEGKEEE--EAE 2140
Query: 2088 GGG-NMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSS 2146
G G + RQ +LG S E ++ K + SEK S +E K D + S
Sbjct: 2141 GSGKDQRQDREAELGAGKSEPRGVEVGVDSGPKSI-SEKGSEED----EEEKLEDDDKSE 2195
Query: 2147 QTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPM 2206
+++ G VS + + AS A +E + E SV+Q+ + A +F P
Sbjct: 2196 ESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMEDGDPSVAQLLHERTFAFSFWPK 2255
Query: 2207 DVV 2209
D V
Sbjct: 2256 DRV 2258
Score = 72 (30.4 bits), Expect = 4.5e-40, Sum P(5) = 4.5e-40
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 2153 GGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGA 2212
GG+++ P+ A PA+ + ++ S E G + ESK+PE K+ E D A
Sbjct: 2756 GGLLNAPLSAAAGSPAATAGPTDPEDGASRAEEKGGE-HEDESKDPE-KSTEAAPGPDSA 2813
Query: 2213 VALENTSEGMGG-PSPPL 2229
+ G G PS PL
Sbjct: 2814 NGSVGAATGPAGLPSNPL 2831
Score = 63 (27.2 bits), Expect = 4.5e-40, Sum P(5) = 4.5e-40
Identities = 39/137 (28%), Positives = 60/137 (43%)
Query: 1610 PGADNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQ----- 1664
PG ++ G E K+ EK + E S Q + EAE+G EP+
Sbjct: 2111 PGQEDKAGAA---EAKAREASEKPEGKEEEEAEGSGKDQRQDREAELGAGKSEPRGVEVG 2167
Query: 1665 VDGFSPRSMS--GVVDELVD--EAGDHMGVSHSP-VHVVEREKS-EELGLPSLSSATKEE 1718
VD P+S+S G ++ + E D S P V R K+ +E S+S+A ++E
Sbjct: 2168 VDS-GPKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTA-RDE 2225
Query: 1719 KIDGSLDKDPDSNLVVL 1735
DG +D D ++ L
Sbjct: 2226 TRDGFYMEDGDPSVAQL 2242
Score = 61 (26.5 bits), Expect = 1.4e-39, Sum P(5) = 1.4e-39
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 2161 PEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALEN 2217
P++A+G A+F E+E E SD E ++ E E E +D +DG +EN
Sbjct: 2882 PDKAEG-AAF--QEDEPLEGSDAEESLDKTAESSVLEDEIAQGEELDSLDGGDEIEN 2935
Score = 61 (26.5 bits), Expect = 3.1e-37, Sum P(5) = 3.1e-37
Identities = 25/88 (28%), Positives = 39/88 (44%)
Query: 2172 AAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVI 2231
AAE + E S+K P G + E + + ++ GA E +G S P I
Sbjct: 2119 AAEAKAREASEK-PEGKEEEEAEGSGKDQRQDREAEL--GAGKSEPRGVEVGVDSGPKSI 2175
Query: 2232 AEDKTENEIEEDPVVNSVAVEESKGSEA 2259
+E +E + EE+ + + EES EA
Sbjct: 2176 SEKGSEED-EEEKLEDDDKSEESSQPEA 2202
Score = 60 (26.2 bits), Expect = 1.4e-39, Sum P(5) = 1.4e-39
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSED 1875
EE+ EGS KD A+ +S G ++GV G ++ EK SE+
Sbjct: 2136 EEEAEGSGKDQRQDREAELGAGKSEPR-GVEVGVDSGPKSISEKGSEE 2182
Score = 59 (25.8 bits), Expect = 7.0e-40, Sum P(5) = 7.0e-40
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEP 2021
V + D+K AE +L GG E +E+E E + P +D+ + P +
Sbjct: 1771 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSPPEDK 1829
Query: 2022 CVQMDVRGDG 2031
M++R G
Sbjct: 1830 EEPMEIRAPG 1839
Score = 54 (24.1 bits), Expect = 4.5e-40, Sum P(5) = 4.5e-40
Identities = 18/48 (37%), Positives = 21/48 (43%)
Query: 1068 KPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQS 1115
KP I+ ANS P+DK PM E PG KH+E S
Sbjct: 1808 KPTRTPFKDEIDEFANSPPEDKEEPM----EIRAPG------KHSEGS 1845
Score = 53 (23.7 bits), Expect = 6.2e-39, Sum P(4) = 6.2e-39
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
A AG Q + +K P+ + + +E EGS+ + A+ E + G++
Sbjct: 2866 ALAGLQGAVGAGEDKAPDKAE--GAAFQEDEPLEGSDAEESLDKTAESSVLEDEIAQGEE 2923
Query: 1859 MGVSLGGATVMEKSSED 1875
+ SL G +E + D
Sbjct: 2924 LD-SLDGGDEIENNEND 2939
Score = 52 (23.4 bits), Expect = 1.4e-39, Sum P(5) = 1.4e-39
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 1985 GVVAETVQEEEKTELSCEKQPIGSSVDDESKGPE--VEPCVQMDVRGDGIVPETVPEELG 2042
G A T + + + + G +DESK PE E D + T P G
Sbjct: 2768 GSPAATAGPTDPEDGASRAEEKGGEHEDESKDPEKSTEAAPGPDSANGSVGAATGPA--G 2825
Query: 2043 LPSSPM 2048
LPS+P+
Sbjct: 2826 LPSNPL 2831
Score = 50 (22.7 bits), Expect = 1.5e-38, Sum P(5) = 1.5e-38
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 1773 EAKIDGSSEKDPVSSQSVLEGS-----KETVAEAG----DQMDISIMPEKLPEHLDIPAS 1823
EAK +SEK + EGS ++ AE G + + + + P+ + S
Sbjct: 2121 EAKAREASEKPEGKEEEEAEGSGKDQRQDREAELGAGKSEPRGVEVGVDSGPKSISEKGS 2180
Query: 1824 LATPEEKTEGSEKDPDSS 1841
EEK E +K +SS
Sbjct: 2181 EEDEEEKLEDDDKSEESS 2198
Score = 49 (22.3 bits), Expect = 1.6e-38, Sum P(4) = 1.6e-38
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1723 SLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSD 1761
SLDK +S+ VLED G+++D G + N +D
Sbjct: 2904 SLDKTAESS--VLEDEIAQ-GEELDSLDGGDEIENNEND 2939
Score = 48 (22.0 bits), Expect = 5.7e-37, Sum P(4) = 5.7e-37
Identities = 26/84 (30%), Positives = 35/84 (41%)
Query: 550 AASDDIPSPGP-DPKTNEQPQSESLNPSGGE-STATDGNVSSIPTAPVPDSVSPS--AVK 605
AA + GP DP+ E GGE + S AP PDS + S A
Sbjct: 2766 AAGSPAATAGPTDPEDGASRAEEK----GGEHEDESKDPEKSTEAAPGPDSANGSVGAAT 2821
Query: 606 GQSGTIDPSSAVAALNSELNTNLA 629
G +G PS+ +A N L + +A
Sbjct: 2822 GPAGL--PSNPLA-FNPFLLSTMA 2842
Score = 44 (20.5 bits), Expect = 4.5e-39, Sum P(5) = 4.5e-39
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 1821 PASLATPEEKTEGSEKDPDSSFAAQE---DPKESVVEA-G-DQMGVSLGGAT-VMEKSSE 1874
PA+ A P + +G+ + + ++ DP++S A G D S+G AT S
Sbjct: 2770 PAATAGPTDPEDGASRAEEKGGEHEDESKDPEKSTEAAPGPDSANGSVGAATGPAGLPSN 2829
Query: 1875 DLATPPLSLA 1884
LA P L+
Sbjct: 2830 PLAFNPFLLS 2839
Score = 43 (20.2 bits), Expect = 4.5e-40, Sum P(5) = 4.5e-40
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 1810 MPEKLPEHLDIP-ASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATV 1868
MP +P++ D+ +S P++K ++P+ +E V + G +GGA
Sbjct: 2548 MPSYVPKNADVLFSSFQKPKQKRHRC-RNPNKLDINTLTGEERVPVVNKRNGKKMGGA-- 2604
Query: 1869 MEKSSEDL 1876
M +DL
Sbjct: 2605 MAPPMKDL 2612
Score = 43 (20.2 bits), Expect = 7.0e-40, Sum P(5) = 7.0e-40
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ K+ L GAD+ E + +PE
Sbjct: 1699 RQEVIGDQAEKI--LEGADSSEADLWIPE 1725
Score = 43 (20.2 bits), Expect = 1.0e-36, Sum P(5) = 1.0e-36
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 572 SLNPSGGEST-ATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNL 628
SL+ E T A + ++ + PT +P SP G +DP + + +N E T L
Sbjct: 2476 SLSTEDAEVTKAFEEDIETPPTRNIP---SP-------GHLDPDTRIPVINLEDGTRL 2523
Score = 42 (19.8 bits), Expect = 5.7e-37, Sum P(4) = 5.7e-37
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 534 EQVP---RRRGKKIGLVLPAASDDIP 556
E+VP +R GKK+G + D+P
Sbjct: 2588 ERVPVVNKRNGKKMGGAMAPPMKDLP 2613
Score = 42 (19.8 bits), Expect = 2.3e-34, Sum P(8) = 2.3e-34
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 673 SPPISDVSAGPESKSNLQSENN---SGGLRLSKSVSMGKQDALS 713
+PP +D S + L + SG L+ S + K DAL+
Sbjct: 2293 TPPTADSPLQKRSLAELSAVGQASISGSEELTASPQLSKDDALN 2336
Score = 42 (19.8 bits), Expect = 2.3e-34, Sum P(8) = 2.3e-34
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 977 KAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPTVETPPPGFNSPN 1033
K + G EG D E A+ + ++ PT P PG P+
Sbjct: 2453 KRRRGRRKNVEGLDLLFMSHKRTSLSTEDAEVTKAFEEDIETPPTRNIPSPGHLDPD 2509
Score = 41 (19.5 bits), Expect = 7.0e-40, Sum P(5) = 7.0e-40
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1114 QSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
+S ++ P K P S+ A +E F EK
Sbjct: 1530 ESDSEEKPCTKPRRPPDRSQGYARSECFRVEK 1561
Score = 41 (19.5 bits), Expect = 1.6e-36, Sum P(5) = 1.6e-36
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 664 RRGKRQALGSPPISDVSAGPESKSNLQSEN-NS--GGLRLSKSVSMGKQDALSQELSNKI 720
RRG+R + +A S S + NS G+ L+ ++ Q S +L+ +
Sbjct: 2659 RRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQNL--QSLQSLQLAGLM 2716
Query: 721 QVQPCGVATSADVAGPDQKPA 741
P G+AT+A G + PA
Sbjct: 2717 GFPP-GLATAAAAGGDAKNPA 2736
Score = 39 (18.8 bits), Expect = 1.5e-38, Sum P(5) = 1.5e-38
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 1981 LRGGGVVAETVQEEEKTELSCEKQPIGSSVDDES 2014
LRG VV+E QE+ +LS + SS + S
Sbjct: 2370 LRGSQVVSENGQEKV-VDLSKASREAASSTSNFS 2402
Score = 39 (18.8 bits), Expect = 2.2e-36, Sum P(6) = 2.2e-36
Identities = 26/91 (28%), Positives = 34/91 (37%)
Query: 1335 PERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDAIVNNLLETPL----DIKSIGG--PIVS 1388
P G S G KSEI A A S + +N LL L D+ S+ + S
Sbjct: 2650 PVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQNLQSLQS 2709
Query: 1389 MKAADVADADHPLETAVELGSPV-NSCTVEP 1418
++ A + L TA G N V P
Sbjct: 2710 LQLAGLMGFPPGLATAAAAGGDAKNPAAVLP 2740
Score = 38 (18.4 bits), Expect = 2.2e-36, Sum P(6) = 2.2e-36
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 1135 PASTEAFEQEKVTNTSSFVNLADLS-SDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEID 1193
P + ++ + S+ V A +S S++ T S + + A +P ++ + EI+
Sbjct: 2295 PTADSPLQKRSLAELSA-VGQASISGSEELTASPQLSKDDALNLSVPRQRRRRRRKIEIE 2353
Query: 1194 AK 1195
A+
Sbjct: 2354 AE 2355
Score = 38 (18.4 bits), Expect = 7.9e-36, Sum P(7) = 7.9e-36
Identities = 22/92 (23%), Positives = 34/92 (36%)
Query: 1591 AESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDK 1650
AE + D D + +L G P G + + +++ EK E ++
Sbjct: 2139 AEGSGKDQRQDR--EAELGAGKSEPRGVEVGVDSGPKSISEKGSEEDEEEKLEDDDKSEE 2196
Query: 1651 ASEAEIGDRIDEPQVDGFSPRSMSGVVDELVD 1682
+S+ E G D S SMS DE D
Sbjct: 2197 SSQPEAGAVSRGKNFDEESNASMSTARDETRD 2228
Score = 38 (18.4 bits), Expect = 2.3e-34, Sum P(8) = 2.3e-34
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 525 GRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATD 584
G G+ G +V G K + D+ D K+ E Q E+ S G++ +
Sbjct: 2155 GAGKSEPRGVEVGVDSGPKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEE 2214
Query: 585 GNVSSIPTA 593
N +S+ TA
Sbjct: 2215 SN-ASMSTA 2222
Score = 37 (18.1 bits), Expect = 1.4e-37, Sum P(6) = 1.4e-37
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 1113 EQSRNQNNPEVKGEETPVSSE 1133
E R +PE K TP E
Sbjct: 1797 EFDREDEDPEYKPTRTPFKDE 1817
Score = 37 (18.1 bits), Expect = 7.9e-36, Sum P(7) = 7.9e-36
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1722 GSLDKDPDSNLVVLEDSKGSIGDQ 1745
G LD D ++ LED +G++
Sbjct: 2504 GHLDPDTRIPVINLEDGTRLVGEE 2527
Score = 37 (18.1 bits), Expect = 1.0e-35, Sum P(7) = 1.0e-35
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 1127 ETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDD 1162
++P+ + A A Q ++ + LS DD
Sbjct: 2298 DSPLQKRSLAELSAVGQASISGSEELTASPQLSKDD 2333
Score = 37 (18.1 bits), Expect = 1.0e-35, Sum P(7) = 1.0e-35
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 1306 INSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAV 1345
++SG + ++S K + + +E S E S P+ AV
Sbjct: 2168 VDSGPK--SISEKGSEEDEEEKLEDDDKSEESSQPEAGAV 2205
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 472 (171.2 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 101/213 (47%), Positives = 137/213 (64%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HY 51
+E+N + G++ + N++MELR CNHPYL + E++ DT P +
Sbjct: 1115 LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFH 1174
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG
Sbjct: 1175 LQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVR 1234
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 1235 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1294
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 204
RIGQ + V V R T + E ++ A KLG+
Sbjct: 1295 RIGQNKAVKVYRLVTRNSYEREMFDRASLKLGL 1327
Score = 69 (29.3 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 48/206 (23%), Positives = 86/206 (41%)
Query: 1069 PENKAQAGRIENIANSSPDDKS-LPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEE 1127
P + G +N+A P S + +PNL P E E+ + ++ EV+G++
Sbjct: 2698 PAGLSSGGEAKNVAAMFPMLLSGMTGLPNLLGMGGLLTKPTESGTEEKKGNDSKEVEGKK 2757
Query: 1128 TPVSSEAPAS--TEAFEQEKVTNTSSFVNLA---DLSSDDKTCS--VTPAMETAPGFDIP 1180
S+ P + + ++T++ A L+ + S + P M PG ++
Sbjct: 2758 ERTESQNPENGGENSVSSSPASSTAALSTAAAASPLALNPLLLSNILYPGMLLTPGLNLH 2817
Query: 1181 IEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVK 1240
I + QS T D + K KN+ L G + +EV K E+ D +K + L +
Sbjct: 2818 IPT-LSQSNT-FDVQ-KNKNSDL-GSS--KSVEV-KEEDSRVRDQEDK--GGTEPSPLHE 2868
Query: 1241 ELIHRSPDHSDMVIGN-VPGNTSEDS 1265
+ +D G+ ++SEDS
Sbjct: 2869 NSTDEGSEKADASSGSDSTSSSSEDS 2894
Score = 58 (25.5 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPR 1671
D +G V PE+K KDDI + + LV+ D + GD++ P + R
Sbjct: 1727 DYMDGDVEDPEYKPAPAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKVYWPTQSALTTR 1785
Score = 58 (25.5 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 30/120 (25%), Positives = 47/120 (39%)
Query: 2147 QTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKA-FEP 2205
Q A+ + S+P D A L + K+E +EP S + S+E EP
Sbjct: 2021 QVALSASPLTSLP--RLLDPKAVILEDVKVKSENLKEEPQSSEEESMSSEETRTLIKSEP 2078
Query: 2206 MDVVDGAVAL---ENTSEGMGGPSPPLVIA--EDKTENEIEEDPVVNSVAVEESKGSEAD 2260
+ +G + + S G G +V A E T N + V+ E S S++D
Sbjct: 2079 VSPKNGVLPQATGDQKSGGKGETDRRMVAARTEPLTPNPASKKQRVHKRGSESSSDSDSD 2138
Score = 57 (25.1 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 26/136 (19%), Positives = 56/136 (41%)
Query: 518 STPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSG 577
S P+ PK +G+Q +G+ ++ A ++ + +P P K + S + S
Sbjct: 2076 SEPVSPKNGVLPQATGDQKSGGKGETDRRMVAARTEPL-TPNPASKKQRVHKRGSESSSD 2134
Query: 578 GESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXX 637
+S + + SS ++ S S S +SG+ SS+ + S +++ +++
Sbjct: 2135 SDSDSERSSCSSRSSSS--SSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSS 2192
Query: 638 XXXXXXXXMQTKGQSR 653
+ + Q R
Sbjct: 2193 SSSEESDSEEEEVQKR 2208
Score = 57 (25.1 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 546 LVLPAASDDIPSPGPDPKTNE--QPQSESLNP-SGGESTATDGNVSSIPTAPVPDSVSPS 602
L P S G D K E + ++ES NP +GGE++ + SS + SP
Sbjct: 2734 LTKPTESGTEEKKGNDSKEVEGKKERTESQNPENGGENSVSSSPASSTAALSTAAAASPL 2793
Query: 603 AV 604
A+
Sbjct: 2794 AL 2795
Score = 53 (23.7 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 38/168 (22%), Positives = 69/168 (41%)
Query: 1204 PGEAIVAGIEVFKPEN-KTDGDSVEKLEDTVDDHSLVKELIHRSP-DHSDMVIGNVPGNT 1261
P I+ ++V K EN K + S E E+++ + LI P + V+ G+
Sbjct: 2038 PKAVILEDVKV-KSENLKEEPQSSE--EESMSSEE-TRTLIKSEPVSPKNGVLPQATGD- 2092
Query: 1262 SEDSSKMPLETPLIMKSTEG--PSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKT 1319
+ K + ++ TE P+ + K V H R + S S +S +E S+ S ++
Sbjct: 2093 QKSGGKGETDRRMVAARTEPLTPNPASKKQRV--HKRGSE--SSSDSDSDSERSSCSSRS 2148
Query: 1320 DVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDA 1367
+ + S S RSG +S+ C + S + + S +
Sbjct: 2149 SSSSSSSS----SCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSS 2192
Score = 50 (22.7 bits), Expect = 6.6e-37, Sum P(4) = 6.6e-37
Identities = 31/128 (24%), Positives = 49/128 (38%)
Query: 1714 ATKEEKI-----DGSLDKDPDSNLVVLED-SKGSIGDQMDCCQSGVVVPENLSDFCQPSS 1767
A+K++++ + S D D DS S S C S + S C +S
Sbjct: 2118 ASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSAS 2177
Query: 1768 SLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGD-QMDISIMPEKLPEHLDIPASLAT 1826
S SS SS S S+E+ +E + Q P + ASL+T
Sbjct: 2178 S---------SSSSSSSSSSSSSSSSSEESDSEEEEVQKRAEGTPHMKAYDEESVASLST 2228
Query: 1827 PEEKTEGS 1834
+++T+ S
Sbjct: 2229 TQDETQDS 2236
Score = 50 (22.7 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 1262 SEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDV 1321
SE SS ++ S+ S S + + HSR SGS +S + CS+ S +
Sbjct: 2129 SESSSDSDSDSERSSCSSRSSSSSSSSSSCS-HSR-----SGSSSSSSSSCSSASSSSSS 2182
Query: 1322 GNHPQNVEPTSASPE 1336
+ + +S+S E
Sbjct: 2183 SSSSSSSSSSSSSEE 2197
Score = 49 (22.3 bits), Expect = 3.5e-36, Sum P(4) = 3.5e-36
Identities = 35/186 (18%), Positives = 75/186 (40%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQD 710
QS+ S TP + + AL + P++ + + K+ + + L + +++
Sbjct: 2004 QSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDPKAVILEDVKVKSENLKEEPQSSEEE 2063
Query: 711 ALS-QELSNKIQVQPCGVATSA-DVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSG 768
++S +E I+ +P A DQK + ++++ + T + P+
Sbjct: 2064 SMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKG----ETDRRMVAARTEPLTPNPA- 2118
Query: 769 STPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNA 828
S +V G+ +S + SE SS + S+ + R S +C++A
Sbjct: 2119 SKKQRVHKR--GSESSSDSDSDSERSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSA 2176
Query: 829 SKSKAT 834
S S ++
Sbjct: 2177 SSSSSS 2182
Score = 47 (21.6 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 42/196 (21%), Positives = 78/196 (39%)
Query: 677 SDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSN----KIQVQPCGVATSAD 732
S+ SA P + + ++ E++ ++SK ++ + ++ + K+ Q G+
Sbjct: 2314 SEPSAPPPAGAAVKEEHDQS-TQMSKVKKHVREKEFTVKIKDEGGLKLTFQKQGLTQRRP 2372
Query: 733 VAGPDQKPAEQS----VRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKE 788
+ D P +Q +R +Q +L + S P TP Q ++ V D +
Sbjct: 2373 LDSEDCAPGQQQYLTRLRDLQGASESSLASF--PKSLPLSGTPIQ-STLGANGVLLDNQP 2429
Query: 789 VLSENSSSKGGV--IPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYT 846
V+ + + V + IL + K V + T + S PAL S T+P
Sbjct: 2430 VVKKRRGRRKNVEGVDILFFNRNKPPNHVTL------GLTTSQISTGINPAL-SYTQP-- 2480
Query: 847 GSTNTEGISNTIHHVP 862
+GI +T VP
Sbjct: 2481 -----QGIPDTETPVP 2491
Score = 47 (21.6 bits), Expect = 1.2e-36, Sum P(5) = 1.2e-36
Identities = 20/72 (27%), Positives = 24/72 (33%)
Query: 1303 GSPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEA-EVA 1361
G + TE T K GN + VE E P+N S S A A
Sbjct: 2731 GGLLTKPTESGTEEKK---GNDSKEVEGKKERTESQNPENGGENSVSSSPASSTAALSTA 2787
Query: 1362 KCPSDAIVNNLL 1373
S +N LL
Sbjct: 2788 AAASPLALNPLL 2799
Score = 46 (21.3 bits), Expect = 7.0e-36, Sum P(4) = 7.0e-36
Identities = 31/156 (19%), Positives = 61/156 (39%)
Query: 668 RQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGV 727
R + S P+S + G ++ ++ G + V+ + S K +V G
Sbjct: 2071 RTLIKSEPVSPKN-GVLPQATGDQKSGGKGETDRRMVAARTEPLTPNPASKKQRVHKRGS 2129
Query: 728 ATSADVAGPDQKPA--EQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASD 785
+S+D ++ + +S S+ + + SSS S + A S + +S
Sbjct: 2130 ESSSDSDSDSERSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSS 2189
Query: 786 TKEVLSENSSSKGGVIPILA--LSNMKAVERVNIQS 819
+ SE S S+ + A +MKA + ++ S
Sbjct: 2190 SSSSSSEESDSEEEEVQKRAEGTPHMKAYDEESVAS 2225
Score = 45 (20.9 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 46/232 (19%), Positives = 80/232 (34%)
Query: 1565 RDGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVP-E 1623
RD ++ + S + ++ S+ + V L + LP +P+ ++ +
Sbjct: 1989 RDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSA-SPLTSLPRLLDPKAVILEDVK 2047
Query: 1624 HKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDE 1683
KSEN+ E+ S E + S SE PQ G G D +
Sbjct: 2048 VKSENLKEEPQSSEEESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKGETDRRMVA 2107
Query: 1684 AGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSK-GSI 1742
A ++ +P +R S S + E S S+ S+ GS
Sbjct: 2108 ARTEP-LTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCSHSRSGSS 2166
Query: 1743 GDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGS 1794
C S + S SSS + + + SE++ V ++ EG+
Sbjct: 2167 SSSSSSCSSA----SSSSSSSSSSSSSSSSSSSEESDSEEEEVQKRA--EGT 2212
Score = 45 (20.9 bits), Expect = 8.9e-36, Sum P(4) = 8.9e-36
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 900 TPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADV 959
TP + ++R K+GS S S D++ + S S S S + S S+ ++
Sbjct: 2114 TPNPA-SKKQRVHKRGSESSSDSDS---DSERSSCSSRSSSSSSSSSSCS-HSRSGSSSS 2168
Query: 960 NDVARVMKEIFSETCSSKAKTGDSSLNEGKD 990
+ + S + SS + + SS +E D
Sbjct: 2169 SSSSCSSASSSSSSSSSSSSSSSSSSSEESD 2199
Score = 43 (20.2 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1778 GSSEKDPVSSQSVLEGSKETVAEAG 1802
G +E P+ S EGS++ A +G
Sbjct: 2859 GGTEPSPLHENSTDEGSEKADASSG 2883
Score = 42 (19.8 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 685 SKSNL--QSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPA 741
S+SN +N + L SKSV + ++D+ ++ +K +P + ++ G ++ A
Sbjct: 2822 SQSNTFDVQKNKNSDLGSSKSVEVKEEDSRVRDQEDKGGTEPSPLHENSTDEGSEKADA 2880
Score = 42 (19.8 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 26/112 (23%), Positives = 41/112 (36%)
Query: 2065 ASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSE 2124
AS R +G ++ +++ D+E R + SSS G S S
Sbjct: 2118 ASKKQRVHKRGSESSSDSDSDSE-----RSSCSSRSSSSSSSSSSCSHSRSGSSS---SS 2169
Query: 2125 KESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEE 2176
S +SA S + SS ++ E V + A+G A +EE
Sbjct: 2170 SSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKRAEGTPHMKAYDEE 2221
Score = 41 (19.5 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 1009 QSSDDKTCSVTPT---VETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
QSS++++ S T +++ P SP G L D G +A++TE
Sbjct: 2058 QSSEEESMSSEETRTLIKSEPV---SPKN--GVLPQATGDQK-SGGKGETDRRMVAARTE 2111
Query: 1066 ALKPENKAQAGRIENIANSSPDD 1088
L P ++ R+ + S D
Sbjct: 2112 PLTPNPASKKQRVHKRGSESSSD 2134
Score = 39 (18.8 bits), Expect = 2.2e-37, Sum P(3) = 2.2e-37
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIA 2232
++ E++ CS + SS S S + A + ++S S
Sbjct: 2137 SDSERSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSE 2196
Query: 2233 E-DKTENEIEE 2242
E D E E+++
Sbjct: 2197 ESDSEEEEVQK 2207
Score = 39 (18.8 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 561 DPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTID 612
D + +Q PS +TD + DS S S+ S D
Sbjct: 2849 DSRVRDQEDKGGTEPSPLHENSTDEGSEKADASSGSDSTSSSSEDSDSSNED 2900
Score = 39 (18.8 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 1678 DELVDEAGDHMGVSHSPVHVVEREK-SEELGLPSLSSATKEEKIDG-SLDKD 1727
D V + D G SP+H ++ SE+ S S +T D S ++D
Sbjct: 2849 DSRVRDQEDKGGTEPSPLHENSTDEGSEKADASSGSDSTSSSSEDSDSSNED 2900
Score = 38 (18.4 bits), Expect = 6.6e-37, Sum P(4) = 6.6e-37
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESKGSEA 2259
T E G S + +++TE++ E+ NSV+ + + A
Sbjct: 2742 TEEKKGNDSKEVEGKKERTESQNPENGGENSVSSSPASSTAA 2783
Score = 38 (18.4 bits), Expect = 4.7e-35, Sum P(4) = 4.7e-35
Identities = 20/118 (16%), Positives = 40/118 (33%)
Query: 900 TPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADV 959
+P G P+ G ++ G D V A+ + N + + + R + ++D
Sbjct: 2080 SPKNGVLPQATGDQKSGGKGETDRRMVA-ARTEPLTPNPASKK---QRVHKRGSESSSDS 2135
Query: 960 NDVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCS 1017
+ + +CSS++ + SS + A SS + S
Sbjct: 2136 DSDSE------RSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSS 2187
Score = 38 (18.4 bits), Expect = 8.3e-34, Sum P(5) = 8.3e-34
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDES 2014
E+ EEE+ + E P + D+ES
Sbjct: 2197 ESDSEEEEVQKRAEGTPHMKAYDEES 2222
Score = 37 (18.1 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKS 385
K E E T+E EK + SDS E + S
Sbjct: 2858 KGGTEPSPLHENSTDEGSEKADASSGSDSTSSSSEDSDSS 2897
Score = 37 (18.1 bits), Expect = 4.7e-36, Sum P(5) = 4.7e-36
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 2166 GPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE 2220
G + + +EE + D+E G + + + E D G+ + ++SE
Sbjct: 2838 GSSKSVEVKEEDSRVRDQEDKGGTEPSPLHENSTDEGSEKADASSGSDSTSSSSE 2892
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 476 (172.6 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 100/227 (44%), Positives = 146/227 (64%)
Query: 8 LGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK--HYLPPIVRLCGKLEML 65
L G + S+ N +M+LR CNHPYL AEE T+ P + + + + GKL++L
Sbjct: 533 LNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEA-TISPSGLYEMSSLTKASGKLDLL 591
Query: 66 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 125
++L +LKA +HRVL FS MT++L+V+E +L + Y+Y R+DG G R ID+FN
Sbjct: 592 SKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDP 651
Query: 126 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 185
S F+FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHR+GQK+ V++ RF
Sbjct: 652 VSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFV 711
Query: 186 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+HK+ + + + G T+ ++ LE +LR
Sbjct: 712 THNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFS--KDELEDILR 756
Score = 39 (18.8 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 328 KRKGEHLGALDTQHY-GRGKRAREVRSYEEQW 358
++K +D + G+GKR R+ Y Q+
Sbjct: 847 QKKQSQQSQVDVESIMGKGKRIRKEIDYSNQY 878
Score = 39 (18.8 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 18/74 (24%), Positives = 31/74 (41%)
Query: 1632 KDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVS 1691
KD++ FG+ + +D SEA D+ V R+ G+ +E A +++ S
Sbjct: 748 KDELEDILRFGTEDLFKDGKSEAI---HYDDKAVADLLDRTNRGI-EEKESWANEYLS-S 802
Query: 1692 HSPVHVVEREKSEE 1705
+E EE
Sbjct: 803 FKVASYATKEDHEE 816
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 458 (166.3 bits), Expect = 1.5e-39, P = 1.5e-39
Identities = 106/231 (45%), Positives = 139/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 435 MKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 489
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R I+
Sbjct: 490 KMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIE 549
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA RAHRIGQK+ V
Sbjct: 550 AFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 609
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V R T TVEE++ AE KL + + I G D ++ + E L+ +
Sbjct: 610 VFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMI 660
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 462 (167.7 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 108/284 (38%), Positives = 158/284 (55%)
Query: 2 KRVEENLGSIGNSKGRS-----VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV 56
K +E+++ ++ + G+ + N VM+LR CNHPYL + AE +L V
Sbjct: 431 KILEKDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFE-GAEPGPPYTTDEHL---V 486
Query: 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG 116
GK+ +LD+LL +LKA RVL FS M+R+LD++EDY F++Y+Y R+DG T+ DR
Sbjct: 487 YNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRI 546
Query: 117 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 176
A ID++N+ S F+FLL+ RAGG+G+NL AD VI+FD+DWNPQ DLQA RAHRIGQ
Sbjct: 547 AAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQT 606
Query: 177 RDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKK 236
+ V V RF T+EE+V A KL + I G A ++ L S+++
Sbjct: 607 KQVYVYRFLVDNTIEEKVLERAAQKLHLDRLVIQQGRAQVAAKAAANKDELLSMIQHGAA 666
Query: 237 EEXXXXXXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKL 280
+ + +I+ + + R E A + KL
Sbjct: 667 KVFNKDSDGDVVKSADDIQDDDIEAMLASGESRTRELNARYEKL 710
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 472 (171.2 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 101/213 (47%), Positives = 137/213 (64%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HY 51
+E+N + G++ + N++MELR CNHPYL + E++ DT P +
Sbjct: 1116 LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFH 1175
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG
Sbjct: 1176 LQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVR 1235
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 1236 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1295
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 204
RIGQ + V V R T + E ++ A KLG+
Sbjct: 1296 RIGQNKAVKVYRLVTRNSYEREMFDRASLKLGL 1328
Score = 59 (25.8 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 42/159 (26%), Positives = 71/159 (44%)
Query: 1108 IEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSV 1167
+E E++ +QN+ E GE + SS + +ST A NT++ N L+ + +
Sbjct: 2754 LEGKKERTESQNS-ENGGENSVSSSPSTSSTAAL------NTAAAANPLALNPLLLSNIL 2806
Query: 1168 TPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVE 1227
P M PG ++ + + QS T D + K KN L G + +EV K E+ D +
Sbjct: 2807 YPGMLLTPGLNLHMPT-LSQSNT-FDVQ-KNKNNDL-GSS--KSLEV-KEEDSRVRDQED 2859
Query: 1228 KLEDTVDDHSLVKELIHRSPDHSDMVIGN-VPGNTSEDS 1265
K + L + + +D G+ ++SEDS
Sbjct: 2860 K--GGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDS 2896
Score = 59 (25.8 bits), Expect = 1.7e-36, Sum P(4) = 1.7e-36
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPR 1671
D +G V PE+K KDDI + + LV+ D + GD+I P + R
Sbjct: 1728 DYMDGDVEDPEYKPAPAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKIYWPTQSALTTR 1786
Score = 58 (25.5 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 25/137 (18%), Positives = 55/137 (40%)
Query: 518 STPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSG 577
S P+ PK +G+Q +G+ ++ A ++ + P+P + +Q + + S
Sbjct: 2077 SEPVSPKNGVLPQATGDQKSGGKGETDRRMVAARTEPLT---PNPASKKQRVHKRGSESS 2133
Query: 578 GESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXX 637
ES + S + S S S +SG+ SS+ + S +++ +++
Sbjct: 2134 SESDSDSERSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSS 2193
Query: 638 XXXXXXXXMQTKGQSRK 654
+ + Q R+
Sbjct: 2194 SSSEESDSEEEEVQKRE 2210
Score = 55 (24.4 bits), Expect = 6.8e-38, Sum P(3) = 6.8e-38
Identities = 33/154 (21%), Positives = 52/154 (33%)
Query: 566 EQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAV----KGQSGTIDPSSAVAALN 621
E+PQS E T T + S P +P + V P A G G D VAA
Sbjct: 2056 EEPQSSEEESMSSEETRT--LIKSEPVSP-KNGVLPQATGDQKSGGKGETD-RRMVAART 2111
Query: 622 SELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSA 681
L N A+ ++ S ++ + + S+
Sbjct: 2112 EPLTPNPASKKQRVHKRGSESSS--ESDSDSERSSCSSRSSSSSSSSSSCSHSRSGSSSS 2169
Query: 682 GPESKSNLQSENNSGGLRLSKSVSMGKQDALSQE 715
S S+ S ++S S S S +++ S+E
Sbjct: 2170 SSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEE 2203
Score = 53 (23.7 bits), Expect = 3.2e-37, Sum P(4) = 3.2e-37
Identities = 31/153 (20%), Positives = 61/153 (39%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQD 710
QS+ S TP + + AL + P++ + ++K + + L + +++
Sbjct: 2005 QSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDAKGIILEDMKVKSENLKEEPQSSEEE 2064
Query: 711 ALS-QELSNKIQVQPCGVATSA-DVAGPDQKPA---EQSVRVVQSN-QPINL-PATHDSS 763
++S +E I+ +P A DQK E R+V + +P+ PA+
Sbjct: 2065 SMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKGETDRRMVAARTEPLTPNPASKKQR 2124
Query: 764 SQPSGSTPAQVPSMDLGNVASDTKEVLSENSSS 796
GS + D + ++ S +SSS
Sbjct: 2125 VHKRGSESSSESDSDSERSSCSSRSSSSSSSSS 2157
Score = 52 (23.4 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 1262 SEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDV 1321
SE SS+ ++ S+ S S + + HSR SGS +S + CS+ S +
Sbjct: 2130 SESSSESDSDSERSSCSSRSSSSSSSSSSCS-HSR-----SGSSSSSSSSCSSASSSSSS 2183
Query: 1322 GNHPQNVEPTSASPE 1336
+ + +S+S E
Sbjct: 2184 SSSSSSSSSSSSSEE 2198
Score = 52 (23.4 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 29/137 (21%), Positives = 51/137 (37%)
Query: 900 TPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADV 959
TP + ++R K+GS S S D++ + S S S S + S S+ ++
Sbjct: 2115 TPNPA-SKKQRVHKRGSESSSESDS---DSERSSCSSRSSSSSSSSSSCS-HSRSGSSSS 2169
Query: 960 NDVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVT 1019
+ + S + SS + + SS +E D V K ++ S++
Sbjct: 2170 SSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGTPHV--KAYDEESVASLS 2227
Query: 1020 PTVETPPPGFNSPNENP 1036
T + F N P
Sbjct: 2228 TTQDETQDSFQMNNGTP 2244
Score = 49 (22.3 bits), Expect = 3.2e-37, Sum P(4) = 3.2e-37
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 1766 SSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLA 1825
SSS + + SS SS S S+E+ +E + P + ASL+
Sbjct: 2168 SSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGTPHVKAYDEESVASLS 2227
Query: 1826 TPEEKTEGSEK----DPDSSFAAQ 1845
T +++T+ S + P+S++ Q
Sbjct: 2228 TTQDETQDSFQMNNGTPESAYILQ 2251
Score = 49 (22.3 bits), Expect = 6.3e-36, Sum P(6) = 6.3e-36
Identities = 51/212 (24%), Positives = 82/212 (38%)
Query: 1679 ELVDEAGDHMGVSHSPVHVV----------EREKSEELGLPSLSSATKEEKIDGSLDKDP 1728
+L+ A H GVS + H++ +R S+ S +S ++ +L P
Sbjct: 1971 DLLIGAAKH-GVSRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASP 2029
Query: 1729 DSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSS--SLAPWEAKIDGSSEKDPVS 1786
++L L D+KG I + M V ENL + Q S S++ E + SE PVS
Sbjct: 2030 LTSLPRLLDAKGIILEDMK------VKSENLKEEPQSSEEESMSSEETRTLIKSE--PVS 2081
Query: 1787 SQS-VLEGSKETVAEAGD-QMDISIMPEKLPEHLDIPASLATPEEKT---EGSEKDPDSS 1841
++ VL + G + D ++ + PAS K SE D DS
Sbjct: 2082 PKNGVLPQATGDQKSGGKGETDRRMVAARTEPLTPNPASKKQRVHKRGSESSSESDSDSE 2141
Query: 1842 FAAQEDPKESVVEAGDQMGVSLGGATVMEKSS 1873
++ S + S G++ SS
Sbjct: 2142 RSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSS 2173
Score = 48 (22.0 bits), Expect = 1.4e-35, Sum P(4) = 1.4e-35
Identities = 40/192 (20%), Positives = 62/192 (32%)
Query: 1618 GVIVPEHK--SENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSG 1675
G+I+ + K SEN+ E+ S E + S SE PQ G G
Sbjct: 2041 GIILEDMKVKSENLKEEPQSSEEESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKG 2100
Query: 1676 VVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVL 1735
D + A ++ +P +R S S + E S S+
Sbjct: 2101 ETDRRMVAARTEP-LTPNPASKKQRVHKRGSESSSESDSDSERSSCSSRSSSSSSSSSSC 2159
Query: 1736 EDSK-GSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGS 1794
S+ GS C S + S SSS + E+ + + + V
Sbjct: 2160 SHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGTPHVKAYD 2219
Query: 1795 KETVAEAGDQMD 1806
+E+VA D
Sbjct: 2220 EESVASLSTTQD 2231
Score = 47 (21.6 bits), Expect = 6.8e-38, Sum P(3) = 6.8e-38
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESKGSEA 2259
T E G S L +++TE++ E+ NSV+ S S A
Sbjct: 2743 TEEKKGNDSKELEGKKERTESQNSENGGENSVSSSPSTSSTA 2784
Score = 47 (21.6 bits), Expect = 8.9e-36, Sum P(4) = 8.9e-36
Identities = 35/156 (22%), Positives = 63/156 (40%)
Query: 1216 KPEN-KTDGDSVEKLEDTVDDHSLVKELIHRSP-DHSDMVIGNVPGNTSEDSSKMPLETP 1273
K EN K + S E E+++ + LI P + V+ G+ + K +
Sbjct: 2050 KSENLKEEPQSSE--EESMSSEE-TRTLIKSEPVSPKNGVLPQATGD-QKSGGKGETDRR 2105
Query: 1274 LIMKSTEG--PSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPT 1331
++ TE P+ + K V H R + S S +S +E S+ S ++ + +
Sbjct: 2106 MVAARTEPLTPNPASKKQRV--HKRGSE--SSSESDSDSERSSCSSRSSSSSSSSS---- 2157
Query: 1332 SASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDA 1367
S S RSG +S+ C + S + + S +
Sbjct: 2158 SCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSS 2193
Score = 45 (20.9 bits), Expect = 1.7e-36, Sum P(4) = 1.7e-36
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1778 GSSEKDPVSSQSVLEGSKETVAEAG 1802
G +E P++ S EGS++ A +G
Sbjct: 2861 GGTEPSPLNENSTDEGSEKADASSG 2885
Score = 43 (20.2 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 37/198 (18%), Positives = 71/198 (35%)
Query: 531 QSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGN-VSS 589
QSG +P ++I L P +++ G PK+ ++ + + +T+ GN + +
Sbjct: 2608 QSGF-LPESMYERI-LTGPVVREEVSRRGRRPKSGIA-KATAAAAAAATATSASGNPLLA 2664
Query: 590 IPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTK 649
P D + A++ + A L + L++
Sbjct: 2665 NGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMG-MPAGLSSGGEAKNMAAMFPMLLSGMT 2723
Query: 650 GQSRKTQSGGVT--PRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMG 707
G GG+ P G + G+ S G + ++ Q+ N G +S S S
Sbjct: 2724 GLPNLLGMGGLLTKPTESGTEEKKGND--SKELEGKKERTESQNSENGGENSVSSSPSTS 2781
Query: 708 KQDALSQELS-NKIQVQP 724
AL+ + N + + P
Sbjct: 2782 STAALNTAAAANPLALNP 2799
Score = 42 (19.8 bits), Expect = 6.3e-36, Sum P(6) = 6.3e-36
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 2064 SASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSS-SDVEEEKI---EGFSK 2119
S+SS S + +++ A + + S SD EEE++ EG
Sbjct: 2155 SSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGTPH 2214
Query: 2120 PVGSEKESIAS-AVPLDESK 2138
++ES+AS + DE++
Sbjct: 2215 VKAYDEESVASLSTTQDETQ 2234
Score = 42 (19.8 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 2166 GPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE 2220
G + L +EE + D+E G + ++ + E D G+ + ++SE
Sbjct: 2840 GSSKSLEVKEEDSRVRDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSE 2894
Score = 41 (19.5 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 19/79 (24%), Positives = 34/79 (43%)
Query: 697 GLRLSKSVSMGKQDALSQELSNKIQVQP-----CGVATSADVAGPDQKPAEQSVRVVQSN 751
G+ L+ +++ LSQ SN VQ G + S +V D + +Q +
Sbjct: 2809 GMLLTPGLNL-HMPTLSQ--SNTFDVQKNKNNDLGSSKSLEVKEEDSRVRDQEDKGGTEP 2865
Query: 752 QPINLPATHDSSSQPSGST 770
P+N +T + S + S+
Sbjct: 2866 SPLNENSTDEGSEKADASS 2884
Score = 41 (19.5 bits), Expect = 2.2e-36, Sum P(4) = 2.2e-36
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 1626 SENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGF---SPRSMSGVVDELVD 1682
S + SS + SS + + E E+ R P V + S S+S DE D
Sbjct: 2176 SASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGTPHVKAYDEESVASLSTTQDETQD 2235
Query: 1683 EAGDHMGVSHS 1693
+ G S
Sbjct: 2236 SFQMNNGTPES 2246
Score = 40 (19.1 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 1031 SP-NENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
SP NEN + K DAS D T S S E
Sbjct: 2866 SPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNE 2901
Score = 40 (19.1 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 34/165 (20%), Positives = 62/165 (37%)
Query: 546 LVLPAASDDIPSPGPDPKTNE--QPQSESLNP-SGGE-STATDGNVSSIPTAPVPDSVSP 601
L P S G D K E + ++ES N +GGE S ++ + SS + +P
Sbjct: 2735 LTKPTESGTEEKKGNDSKELEGKKERTESQNSENGGENSVSSSPSTSSTAALNTAAAANP 2794
Query: 602 SAVKGQ--SGTIDPSSAVA-ALNSELNTNLATAXXXXXXXXXX----XXXXMQTKGQSRK 654
A+ S + P + LN + T L+ + ++ K + +
Sbjct: 2795 LALNPLLLSNILYPGMLLTPGLNLHMPT-LSQSNTFDVQKNKNNDLGSSKSLEVKEEDSR 2853
Query: 655 TQS----GGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNS 695
+ GG P + +D S+G +S S+ +++S
Sbjct: 2854 VRDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDS 2898
Score = 39 (18.8 bits), Expect = 2.2e-37, Sum P(3) = 2.2e-37
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 685 SKSNL--QSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPA 741
S+SN +N + L SKS+ + ++D+ ++ +K +P + ++ G ++ A
Sbjct: 2824 SQSNTFDVQKNKNNDLGSSKSLEVKEEDSRVRDQEDKGGTEPSPLNENSTDEGSEKADA 2882
Score = 39 (18.8 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 25/132 (18%), Positives = 51/132 (38%)
Query: 668 RQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGV 727
R + S P+S + G ++ ++ G + V+ + S K +V G
Sbjct: 2072 RTLIKSEPVSPKN-GVLPQATGDQKSGGKGETDRRMVAARTEPLTPNPASKKQRVHKRGS 2130
Query: 728 ATSADVAGPDQKPA--EQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASD 785
+S++ ++ + +S S+ + + SSS S + A S + +S
Sbjct: 2131 ESSSESDSDSERSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSS 2190
Query: 786 TKEVLSENSSSK 797
+ SE S S+
Sbjct: 2191 SSSSSSEESDSE 2202
Score = 39 (18.8 bits), Expect = 7.1e-36, Sum P(4) = 7.1e-36
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIA 2232
++ E++ CS + SS S S + A + ++S S
Sbjct: 2138 SDSERSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSE 2197
Query: 2233 E-DKTENEIEE 2242
E D E E+++
Sbjct: 2198 ESDSEEEEVQK 2208
Score = 39 (18.8 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 561 DPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTID 612
D + +Q PS +TD + DS S S+ S D
Sbjct: 2851 DSRVRDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNED 2902
Score = 38 (18.4 bits), Expect = 1.7e-36, Sum P(4) = 1.7e-36
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 1584 SSSKDIIAESAKADVVLDEHGKVQ 1607
S++KD +AE ++A+ DE K++
Sbjct: 1460 SATKDELAELSEAESEGDEKPKLR 1483
Score = 38 (18.4 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 32/171 (18%), Positives = 71/171 (41%)
Query: 1033 NENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKA--QAGRIENIANSSPDDKS 1090
+EN E + + S+ + T TL K+E + P+N QA + D+
Sbjct: 2051 SENLKEEPQSSEEESMSSEET----RTLI-KSEPVSPKNGVLPQATGDQKSGGKGETDRR 2105
Query: 1091 L------PMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEE-TPVSSEAPASTEAFEQ 1143
+ P+ PN P + K +S ++++ + + + SS + +S+ +
Sbjct: 2106 MVAARTEPLTPN----PASKKQRVHKRGSESSSESDSDSERSSCSSRSSSSSSSSSSCSH 2161
Query: 1144 EKV----TNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGT 1190
+ +++SS + + SS + S + + ++ D E+ ++ GT
Sbjct: 2162 SRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGT 2212
Score = 37 (18.1 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKS 385
K E E T+E EK + SDS E + S
Sbjct: 2860 KGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSS 2899
Score = 37 (18.1 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 18/84 (21%), Positives = 31/84 (36%)
Query: 458 EKDAMTGQSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQPTTAFVPVAPGSQSASACP 517
E D+ + +S+ +S S H G + SS + + A S S+S+
Sbjct: 2135 ESDSDSERSSCSSRS----SSSSSSSSSCSHSRSGSSSSSSSSCSS---ASSSSSSSSSS 2187
Query: 518 STPMQPKGRGRRIQSGEQVPRRRG 541
S+ E+V +R G
Sbjct: 2188 SSSSSSSSSEESDSEEEEVQKREG 2211
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 480 (174.0 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 110/234 (47%), Positives = 149/234 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT-------LIPKHY-LPPIVRLCGKLE 63
G++ ++ N++MELR CNHPYL E++ T +IP + L +VR GKL
Sbjct: 303 GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLV 362
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 363 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 422
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R
Sbjct: 423 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 482
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 233
T + E ++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 483 LITRNSYEREMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 535
Score = 42 (19.8 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R R++ S ++ + TE + E +C+A
Sbjct: 682 YGWG-RWRDILSHGRFKRRMTERDVETICRA 711
Score = 38 (18.4 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 660 VTPRRRGKRQALGSPPISDVSAGP 683
++P GK + L + + DVS P
Sbjct: 734 ISPAENGKTKELQNHSVFDVSPFP 757
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 461 (167.3 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 125/389 (32%), Positives = 196/389 (50%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL A E + Y + + GKL +
Sbjct: 1005 EALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPTAATEAPKMPNGMYDGSALTKASGKLML 1064
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L + Y+Y R+DG +GG R ID+FN
Sbjct: 1065 LFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRFNA 1124
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+P F+FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1125 PGAPQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1184
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ + K+E
Sbjct: 1185 VTKASVEERITQVAKKKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEQLFKDELGEG 1244
Query: 243 XXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+ ID +D+ + E + + L + + +V D+
Sbjct: 1245 DNKEEDSSVIHYDDKAID--RLLDRNQDATEDTELQSMNEYLSSF-----KVAQYVVKDE 1297
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSY----- 354
D + +I ++ V P+ K H +H G+GKR R+ +Y
Sbjct: 1298 DEEEEDVDREIIKQEES-VDPDYWEKLLRHHYEQQQEDLARHLGKGKRPRKPVNYNDCSQ 1356
Query: 355 EEQWTEEEFEKMCQAESSDSPKLKEEGLE 383
E++ + +++ SD EEG E
Sbjct: 1357 EDRGSRRDWQDDQSDNQSDYSVASEEGDE 1385
Score = 81 (33.6 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 38/164 (23%), Positives = 66/164 (40%)
Query: 1040 TGTKNDASVRGDHTPVSGHTLASKTEALKP-ENKAQAGRIENIANSSPDDKSLPMVPNLE 1098
TGT D +TP SKTE +K E K + + + S +D+ + + E
Sbjct: 1556 TGTPADTQ---PNTPAPEDL--SKTEDIKELEEKTEGDGEKEVKGSRQEDEIIEIPDEGE 1610
Query: 1099 TAPPGF--DIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLA 1156
+P + +K +E S ++ + E+ ++ S E + + S N
Sbjct: 1611 KSPSSAKKEEKTDKESEASSEKDGGSRENEKDGEKEKSAESKENMSSDVKADGSDATNSG 1670
Query: 1157 DLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKN 1200
D S+ K S M+T+P D E E+ G + + K +N
Sbjct: 1671 D-STKTKEESSEEKMDTSPASDEKKELKDEKDGVKPEDSAKLQN 1713
Score = 73 (30.8 bits), Expect = 2.3e-38, Sum P(3) = 2.3e-38
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 1759 LSDFCQPSSSLAPWEAKID----GSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKL 1814
+ D + S S A E K D SSEKD S ++ +G KE AE+ + M + +
Sbjct: 1605 IPDEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKDGEKEKSAESKENMSSDVKADGS 1664
Query: 1815 PEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKE 1850
D S + + K E SE+ D+S A ++ KE
Sbjct: 1665 ----DATNSGDSTKTKEESSEEKMDTS-PASDEKKE 1695
Score = 68 (29.0 bits), Expect = 7.8e-38, Sum P(3) = 7.8e-38
Identities = 41/187 (21%), Positives = 65/187 (34%)
Query: 905 EAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDV-- 962
E+ R G P P D + N + + K L K E +V
Sbjct: 1538 ESKRAAAIAAGEDPKTPSTGTPADTQPNTPAPEDLSKTEDIK--ELEEKTEGDGEKEVKG 1595
Query: 963 ARVMKEIFSETCSSKAKTGDSSLNEGK-DXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPT 1021
+R EI E K+ S+ E K D +K +K+
Sbjct: 1596 SRQEDEII-EIPDEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKDGEKEKSAESKEN 1654
Query: 1022 VETPPPGFNSPNENPGELTGTKNDASV-RGDHTPVSGHT--LASKTEALKPENKAQAGRI 1078
+ + S N G+ T TK ++S + D +P S L + + +KPE+ A+
Sbjct: 1655 MSSDVKADGSDATNSGDSTKTKEESSEEKMDTSPASDEKKELKDEKDGVKPEDSAKLQNG 1714
Query: 1079 ENIANSS 1085
EN +S
Sbjct: 1715 ENAKETS 1721
Score = 61 (26.5 bits), Expect = 4.1e-37, Sum P(3) = 4.1e-37
Identities = 33/130 (25%), Positives = 53/130 (40%)
Query: 1765 PSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASL 1824
P+ + A D S +D + EG E + Q D I ++P+ + S
Sbjct: 1559 PADTQPNTPAPEDLSKTEDIKELEEKTEGDGEKEVKGSRQEDEII---EIPDEGEKSPSS 1615
Query: 1825 ATPEEKTE-----GSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATP 1879
A EEKT+ SEKD S ++ KE E+ + M + +S D +T
Sbjct: 1616 AKKEEKTDKESEASSEKDGGSRENEKDGEKEKSAESKENMSSDVKADGSDATNSGD-STK 1674
Query: 1880 PLSLANEEEM 1889
++EE+M
Sbjct: 1675 TKEESSEEKM 1684
Score = 58 (25.5 bits), Expect = 8.5e-37, Sum P(3) = 8.5e-37
Identities = 36/178 (20%), Positives = 76/178 (42%)
Query: 1188 SGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKELIHRSP 1247
+GT D + NTP P E + ++ + E KT+GD ++++ + + ++ E+ P
Sbjct: 1556 TGTPADTQ---PNTPAP-EDLSKTEDIKELEEKTEGDGEKEVKGSRQEDEII-EI----P 1606
Query: 1248 DHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPIN 1307
D + P + ++ K E+ + +G S + D + S E+ S +
Sbjct: 1607 DEGE----KSPSSAKKEE-KTDKESEASSEK-DGGSRENEKDGEKEKSAESKENMSSDVK 1660
Query: 1308 S-GTECSTV--SVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAK 1362
+ G++ + S KT + + ++ + AS E+ ++ G + E AK
Sbjct: 1661 ADGSDATNSGDSTKTKEESSEEKMDTSPASDEKKELKDEKDGVKPEDSAKLQNGENAK 1718
Score = 54 (24.1 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 41/188 (21%), Positives = 68/188 (36%)
Query: 1982 RGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGI--VPETVPE 2039
R + A + T + QP + +D SK +++ ++ GDG V + E
Sbjct: 1541 RAAAIAAGEDPKTPSTGTPADTQPNTPAPEDLSKTEDIKE-LEEKTEGDGEKEVKGSRQE 1599
Query: 2040 E--LGLPSSPMVVXXXXXXXXXXXXPS-ASSIPRGESKGPDAEANNIIDAEGGGNMRQTV 2096
+ + +P S ASS G S+ + + AE NM V
Sbjct: 1600 DEIIEIPDEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKDGEKEKSAESKENMSSDV 1659
Query: 2097 PQDLGLPLSSSDVEEEKIEGFSK-----PVGSEKESIAS----AVPLDESKGPDAEVSSQ 2147
D +S D + K E + P EK+ + P D +K + E + +
Sbjct: 1660 KADGSDATNSGDSTKTKEESSEEKMDTSPASDEKKELKDEKDGVKPEDSAKLQNGENAKE 1719
Query: 2148 TAIEGGGV 2155
T+ G GV
Sbjct: 1720 TSGGGDGV 1727
Score = 53 (23.7 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 28/102 (27%), Positives = 40/102 (39%)
Query: 2090 GNMRQTVPQDLG-LPLSSSDVEE-EKIEG-FSKPVGSEKESIASAVPLDESKGPDAEVSS 2146
G RQ V +G + L V+E E + G +S P E E A + + G D + S
Sbjct: 1498 GLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMKELEESKRAAAI--AAGEDPKTPS 1555
Query: 2147 QTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGS 2188
T + P PE+ EE+ +KE GS
Sbjct: 1556 -TGTPADTQPNTPAPEDLSKTEDIKELEEKTEGDGEKEVKGS 1596
Score = 52 (23.4 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 345 GKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS 392
G++ + S E ++ + + S DS K KEE E+ + T +S
Sbjct: 1643 GEKEKSAESKENMSSDVKADGSDATNSGDSTKTKEESSEEKMDTSPAS 1690
Score = 47 (21.6 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 30/109 (27%), Positives = 46/109 (42%)
Query: 1707 GLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPS 1766
G S SSA KEEK D + + + E+ K G++ +S EN+S +
Sbjct: 1609 GEKSPSSAKKEEKTDKESEASSEKDGGSRENEKD--GEKEKSAES----KENMSSDVKAD 1662
Query: 1767 SSLAPWEAKIDGSSEKDPV-SSQSVLEGS--KETVAEAGDQMDISIMPE 1812
S +A G S K SS+ ++ S + E D+ D + PE
Sbjct: 1663 GS----DATNSGDSTKTKEESSEEKMDTSPASDEKKELKDEKD-GVKPE 1706
Score = 45 (20.9 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 29/128 (22%), Positives = 53/128 (41%)
Query: 1022 VETPPPGFNSPNE-NPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIEN 1080
+E P G SP+ E T +++AS D G + ++ + K E A++ EN
Sbjct: 1603 IEIPDEGEKSPSSAKKEEKTDKESEASSEKD-----GGSRENEKDGEK-EKSAESK--EN 1654
Query: 1081 IANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEA 1140
+++ D S + ++ + EK + + E+K E+ V E A +
Sbjct: 1655 MSSDVKADGS-DATNSGDSTKTKEESSEEKMDTSPASDEKKELKDEKDGVKPEDSAKLQN 1713
Query: 1141 FEQEKVTN 1148
E K T+
Sbjct: 1714 GENAKETS 1721
Score = 44 (20.5 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 25/111 (22%), Positives = 42/111 (37%)
Query: 2162 EEADGPASFLAAEEEKNECS----DKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALEN 2217
EE+ A+ A E+ K + D +P + + SK + K E DG ++
Sbjct: 1537 EESKRAAAIAAGEDPKTPSTGTPADTQPNTPAPEDL-SKTEDIKELEEKTEGDGEKEVKG 1595
Query: 2218 TSE--------GMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESKGSEAD 2260
+ + G SP E+KT+ E E + + E K E +
Sbjct: 1596 SRQEDEIIEIPDEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKDGEKE 1646
Score = 39 (18.8 bits), Expect = 8.0e-35, Sum P(3) = 8.0e-35
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 570 SESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSE 623
S++ N T + + + T+P D +K + + P + N E
Sbjct: 1664 SDATNSGDSTKTKEESSEEKMDTSPASDE--KKELKDEKDGVKPEDSAKLQNGE 1715
Score = 38 (18.4 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 360 EEEFEKMCQAESSDSPKLK--EEGLEKSLPTVVS 391
+E+F++ +A +S P K +K LP +++
Sbjct: 1384 DEDFDERSEAANSRRPSRKGLRNDKDKPLPPLLA 1417
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 469 (170.2 bits), Expect = 3.9e-39, Sum P(5) = 3.9e-39
Identities = 104/233 (44%), Positives = 143/233 (61%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVRLCGKLE 63
G + ++ N++MELR CNHPYL E++ + P L +++ GKL
Sbjct: 1223 GQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQAAGKLV 1282
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 1283 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1342
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V + R
Sbjct: 1343 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYR 1402
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 233
T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1403 LITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1455
Score = 79 (32.9 bits), Expect = 3.9e-39, Sum P(5) = 3.9e-39
Identities = 40/182 (21%), Positives = 67/182 (36%)
Query: 2028 RGDGIVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAE 2087
RG VP +G +P V+ + E ++ + E
Sbjct: 2124 RGASTVPSLNTLAMGFGQAPPVIASAHAHEEKVMEQAEGKAEECEHSPAKERSDGKEEEE 2183
Query: 2088 GGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQ 2147
G + + Q+ SS E + +EG P GS+ S + +E K D + S +
Sbjct: 2184 EAGGAKDS-RQECEAEASSVKGELKGVEGSGDP-GSKSVSEKGSEEDEEEKLEDDDKSEE 2241
Query: 2148 TAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMD 2207
++ G VS + + AS A +E + E SV+Q+ + A +F P D
Sbjct: 2242 SSQPEAGAVSRGKTFDEESNASMSTARDETRDGFYMEDGDPSVAQLLHERTFAFSFWPKD 2301
Query: 2208 VV 2209
V
Sbjct: 2302 RV 2303
Score = 55 (24.4 bits), Expect = 7.7e-37, Sum P(4) = 7.7e-37
Identities = 43/209 (20%), Positives = 77/209 (36%)
Query: 2026 DVRGDG-IVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNII 2084
D +G ++P +P GLP+ V + + S+G + +
Sbjct: 2776 DAKGPAAVLPLMLPGMAGLPN----VFGLGGLLNNPLSAATGNTTTASSQGEPEDGTSKA 2831
Query: 2085 DAEGGGNMRQTVPQDLGLP-LSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAE 2143
+ +G N + + +S++D + + P +A L + P
Sbjct: 2832 EEKGNDNEDENRDSEKSTDAVSAADSANGSVGAATAPAALPSNPLAFNPFLLSTMAPGLF 2891
Query: 2144 VSSQTAIEGGGVVSIP-VP-----EEADGPASFLAAEE-EKNECSDKEPV-GSSVSQ--- 2192
S G G +++P P + A G + AA++ E C D E + GS +
Sbjct: 2892 YPSMFLPPGLGGLTLPGFPALAGLQNAVGASEEKAADKAEGGPCKDGETLEGSDAEENLD 2951
Query: 2193 --IESK--EPEAKAFEPMDVVDGAVALEN 2217
IES E E E +D ++G +EN
Sbjct: 2952 KTIESSILEDEVAQGEELDSLEGGDEIEN 2980
Score = 55 (24.4 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 27/118 (22%), Positives = 43/118 (36%)
Query: 1084 SSPDDKSLPMVPNLETAPPGFDI--PI--EKHNEQSRNQNNPEVKGEETPVSSEAPASTE 1139
S ++ VP+L T GF P+ H + + E K EE S S
Sbjct: 2119 SFAQNRGASTVPSLNTLAMGFGQAPPVIASAHAHEEKVMEQAEGKAEECEHSPAKERSDG 2178
Query: 1140 AFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVK 1197
E+E+ + + + SV ++ G P K V + G+E D + K
Sbjct: 2179 KEEEEEAGGAKD----SRQECEAEASSVKGELKGVEGSGDPGSKSVSEKGSEEDEEEK 2232
Score = 54 (24.1 bits), Expect = 3.9e-39, Sum P(5) = 3.9e-39
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEP 2021
V + D+K AE +L GG E +E+E E + P +D+ + P +
Sbjct: 1810 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRAPFKDEIDEFANSPPEDK 1868
Query: 2022 CVQMDVRGDGIVPETVPEELG 2042
M+ + G E+ ELG
Sbjct: 1869 EDSMEAQSTGKHSES-NAELG 1888
Score = 52 (23.4 bits), Expect = 2.3e-36, Sum P(5) = 2.3e-36
Identities = 28/101 (27%), Positives = 39/101 (38%)
Query: 2160 VPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESK-EPEAKAFEPMDVVDGAVALENT 2218
V E+A+G A K KE + +S+ E EA+A + G
Sbjct: 2156 VMEQAEGKAEECEHSPAKERSDGKEEEEEAGGAKDSRQECEAEASSVKGELKGV------ 2209
Query: 2219 SEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESKGSEA 2259
EG G P V +K E EE+ + + EES EA
Sbjct: 2210 -EGSGDPGSKSV--SEKGSEEDEEEKLEDDDKSEESSQPEA 2247
Score = 51 (23.0 bits), Expect = 7.7e-37, Sum P(4) = 7.7e-37
Identities = 52/248 (20%), Positives = 92/248 (37%)
Query: 518 STPMQPKGRGRRIQ-SGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
S P Q + R R+++ E+ +RR + +V + S N Q + L+ +
Sbjct: 2383 SVPRQRRRRRRKVEIEAERAAKRRNL-MEMVAQLRESQVVSE------NGQEKVVDLSKA 2435
Query: 577 GGESTATDGNVSSIPTAPVPDSVS-P--SAVKGQSGTIDPSSAVAALNSELNTNLATAX- 632
E+T++ N SS+ + + +VS P A K Q + + LN +L
Sbjct: 2436 SREATSSTSNFSSLTSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHVLNGSLVDGEP 2495
Query: 633 ---XXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDV-SAGP-ESKS 687
+ R S + + + +PPI ++ S G + +
Sbjct: 2496 PMKRRRGRRKNVEGLDLLFMSHKRTPLSAEDAEVTKAFEEDIETPPIRNIPSPGQLDPDT 2555
Query: 688 NLQSENNSGGLRLSKSVSMGKQDALSQ-ELSNKIQVQ-PCGVATSADVA-GPDQKPAEQS 744
+ N G RL + +D + +L V P V +ADV P QKP ++
Sbjct: 2556 RIPVINLEDGTRLVGEEAPKNKDLVDWLKLHPMYTVDMPSYVPKNADVLFSPFQKPKQKR 2615
Query: 745 VRVVQSNQ 752
R N+
Sbjct: 2616 HRCRNPNK 2623
Score = 49 (22.3 bits), Expect = 8.2e-35, Sum P(6) = 8.2e-35
Identities = 48/232 (20%), Positives = 80/232 (34%)
Query: 1507 ATSCDTASLDDSHDNGNVEVLCGGTGDKKADCKMEPDCLVAS-DSVNMELVPRDFGVGRR 1565
A C+ + + D E GG D + +C+ E + V P V +
Sbjct: 2164 AEECEHSPAKERSDGKEEEEEAGGAKDSRQECEAEASSVKGELKGVEGSGDPGSKSVSEK 2223
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHK 1625
+ + + SS + A + DE + D G + E
Sbjct: 2224 GSEEDEEEKLEDDDKSEESSQPE--AGAVSRGKTFDEESNASMSTARDETRDGFYM-EDG 2280
Query: 1626 SENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAG 1685
++ + + E F S +D+ + D I E + G P + ++ D G
Sbjct: 2281 DPSVAQ---LLHERTFAFSFWPKDRVMINRL-DNICEAVLKGKWPINRR----QMFDFQG 2332
Query: 1686 DHMGVSHSPVHVVEREKS-EELGLPSLSSATKEEKIDGS--LDKDPDSNLVV 1734
G S V +++S EL + S +S + E I S L KD NL V
Sbjct: 2333 LVPGYPPSTVDSPLQKRSFAELSMVSQASVSASEDITTSPQLSKDDALNLSV 2384
Score = 47 (21.6 bits), Expect = 1.3e-34, Sum P(6) = 1.3e-34
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 1818 LDIPASLATPEEKTEGSEKDP-DSSFAAQEDPKESVVEAGD-QMGVSLGGATVMEKSSED 1875
L+ P S AT T S+ +P D + A+E ++ E D + A S
Sbjct: 2804 LNNPLSAATGNTTTASSQGEPEDGTSKAEEKGNDNEDENRDSEKSTDAVSAADSANGSVG 2863
Query: 1876 LATPPLSL 1883
AT P +L
Sbjct: 2864 AATAPAAL 2871
Score = 46 (21.3 bits), Expect = 3.9e-39, Sum P(5) = 3.9e-39
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ K+ L GAD+ E V +PE
Sbjct: 1738 RQEVIGDQAEKI--LEGADSSEADVWIPE 1764
Score = 46 (21.3 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 43/176 (24%), Positives = 67/176 (38%)
Query: 1707 GLPSLSSATKEEKIDGSLDKDPDS----NLVVLEDS-KGSIGDQMDCCQSGVVVPENLSD 1761
G P ++ EEK + + D++ DS + V DS GS+G + +P N
Sbjct: 2822 GEPEDGTSKAEEKGNDNEDENRDSEKSTDAVSAADSANGSVG----AATAPAALPSNPLA 2877
Query: 1762 FCQPS--SSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLD 1819
F P S++AP S P L G A AG Q + EK + +
Sbjct: 2878 F-NPFLLSTMAP--GLFYPSMFLPPGLGGLTLPGFP---ALAGLQNAVGASEEKAADKAE 2931
Query: 1820 IPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSED 1875
E EGS+ + + + E V G+++ SL G +E + D
Sbjct: 2932 --GGPCKDGETLEGSDAEENLDKTIESSILEDEVAQGEELD-SLEGGDEIENNGND 2984
Score = 45 (20.9 bits), Expect = 2.1e-34, Sum P(6) = 2.1e-34
Identities = 24/108 (22%), Positives = 42/108 (38%)
Query: 669 QALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSN-KIQVQPCGV 727
QA G + S E + E +GG + S+ + ++ EL + P
Sbjct: 2159 QAEGKAEECEHSPAKERSDGKEEEEEAGGAKDSRQECEAEASSVKGELKGVEGSGDPGSK 2218
Query: 728 ATSADVAGPDQKPA-EQSVRVVQSNQP----INLPATHDSSSQPSGST 770
+ S + D++ E + +S+QP ++ T D S S ST
Sbjct: 2219 SVSEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKTFDEESNASMST 2266
Score = 43 (20.2 bits), Expect = 3.9e-39, Sum P(5) = 3.9e-39
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R ++ S Y+ Q TE + E +C+A
Sbjct: 1605 YGWG-RWTDILSHGRYKRQLTEHDVETICRA 1634
Score = 43 (20.2 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 1068 KPENKAQAGRIENIANSSPDDK 1089
KP I+ ANS P+DK
Sbjct: 1847 KPTRAPFKDEIDEFANSPPEDK 1868
Score = 43 (20.2 bits), Expect = 3.8e-35, Sum P(5) = 3.8e-35
Identities = 22/77 (28%), Positives = 30/77 (38%)
Query: 488 HVMVGI-APSSQPTTA---FVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQ-VP---RR 539
H M + PS P A F P Q C + P +GE+ VP +R
Sbjct: 2586 HPMYTVDMPSYVPKNADVLFSPFQKPKQKRHRCRN----PNKLDINTLTGEERVPVVNKR 2641
Query: 540 RGKKIGLVLPAASDDIP 556
GKK+G + D+P
Sbjct: 2642 NGKKMGGAMAPPMKDLP 2658
Score = 43 (20.2 bits), Expect = 2.1e-34, Sum P(6) = 2.1e-34
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 1126 EETPVSSEAPASTEAFEQE 1144
+ TP+S+E T+AFE++
Sbjct: 2518 KRTPLSAEDAEVTKAFEED 2536
Score = 42 (19.8 bits), Expect = 3.8e-35, Sum P(5) = 3.8e-35
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 664 RRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQ 723
RRG+R P S+++ + + + S + L L S+ G Q L N +Q
Sbjct: 2704 RRGRR------PKSEIARAAAAAAAVASTSGINPL-LVNSLFAGMDLTSLQNLQNLQSLQ 2756
Query: 724 -------PCGVATSADVAGPDQKPA 741
P G+AT+A G + PA
Sbjct: 2757 LAGLMGFPPGLATAATAGGDAKGPA 2781
Score = 40 (19.1 bits), Expect = 5.9e-34, Sum P(4) = 5.9e-34
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKN 2178
G AE + A V IP P A+ PA + E +K+
Sbjct: 1743 GDQAEKILEGADSSEADVWIPEPFHAEVPADWWDKEADKS 1782
Score = 39 (18.8 bits), Expect = 7.7e-35, Sum P(5) = 7.7e-35
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1380 KSIGGPIVSMKAADVADADHPLETAVE 1406
K+ GGP + + +DA+ L+ +E
Sbjct: 2929 KAEGGPCKDGETLEGSDAEENLDKTIE 2955
Score = 38 (18.4 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1861 VSLGGATVMEKSSEDLATPPL 1881
+S A V + ED+ TPP+
Sbjct: 2522 LSAEDAEVTKAFEEDIETPPI 2542
Score = 38 (18.4 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1722 GSLDKDPDSNLVVLEDSKGSIGDQ 1745
G LD D ++ LED +G++
Sbjct: 2549 GQLDPDTRIPVINLEDGTRLVGEE 2572
Score = 38 (18.4 bits), Expect = 6.0e-35, Sum P(5) = 6.0e-35
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 2222 MG-GPSPPLVIA----EDKTENEIE--EDPVVNSVAVEESKGSEAD 2260
MG G +PP++ + E+K + E + +S A E S G E +
Sbjct: 2137 MGFGQAPPVIASAHAHEEKVMEQAEGKAEECEHSPAKERSDGKEEE 2182
Score = 38 (18.4 bits), Expect = 9.7e-35, Sum P(5) = 9.7e-35
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 1498 GIALDKTEIAT-SCDTASLDDSHDNGNVEVLCGGTG--DKKADCKMEPDCLVASDSVN 1552
G+ + AT + TAS ++G + G D+ D + D + A+DS N
Sbjct: 2802 GLLNNPLSAATGNTTTASSQGEPEDGTSKAEEKGNDNEDENRDSEKSTDAVSAADSAN 2859
Score = 37 (18.1 bits), Expect = 2.1e-37, Sum P(5) = 2.1e-37
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 1759 LSD---FCQPSSSLAPW 1772
LSD CQPS L W
Sbjct: 2063 LSDRLKLCQPSLDLPEW 2079
Score = 37 (18.1 bits), Expect = 8.2e-35, Sum P(6) = 8.2e-35
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 823 KACTNASKSKATLPALDSITEPYTGSTNTEGISNTIHHV 861
+ C +K + P L S+ EP T E S T++ +
Sbjct: 2013 RVCRMPAKPEDEPPDLASLIEPIT----EERASRTLYRI 2047
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 455 (165.2 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 121/385 (31%), Positives = 199/385 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L + G S+ N VM+L+ CNHPYL + A E + Y ++R GKL +
Sbjct: 1017 EALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLL 1076
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L LK HRVL FS MT++LD++ED+L + Y+Y R+DG +G R ID+FN
Sbjct: 1077 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1136
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1137 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1196
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T +VEE++ A+ K+ + + + G + T + ++E L+ +L+ EE
Sbjct: 1197 VTRASVEERITQVAKKKMMLTHLVVRPGL-GSKTGSMSKQE-LDDILK-FGTEELFKDEA 1253
Query: 245 XXXXXXXXXRSESEIDVFE--SVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
+S + ++ ++++ + T ++G+ + +V ++
Sbjct: 1254 TDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFK-VAQYVVREE 1312
Query: 303 DLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALD---TQHYGRGKRAREVRSYEEQWT 359
++ E + + V P+ K H ++ G+GKR R+ +Y +
Sbjct: 1313 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1372
Query: 360 EEEFEKMCQAES-SDSPKLKEEGLE 383
E+ + Q+++ SD EEG E
Sbjct: 1373 EDRDWQDDQSDNQSDYSVASEEGDE 1397
Score = 69 (29.3 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 37/133 (27%), Positives = 59/133 (44%)
Query: 2118 SKPVGSEKESIASAVPLDES-KGPDAEVSSQTAIEGGGVV-SIPVPEEA----DGPASFL 2171
S P ++ + A A P ++ K + + + + E V S+P PE A PA
Sbjct: 1566 STPGDTQPNTPAPAPPAEDGIKVEENNLKEEESAEAEKEVKSVP-PEAAVECTQPPAP-- 1622
Query: 2172 AAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDV-VDGAVALENTSEGMGGPSPPLV 2230
A+EEEK + P G ++E E + + E M+ G +E E P+V
Sbjct: 1623 ASEEEKVPV--EPPEGEE--KVEKAEVKERTEEAMETDPKGNADVEKVEEKAAVDLTPIV 1678
Query: 2231 IAEDKTENEIEED 2243
+ EDK E + EE+
Sbjct: 1679 V-EDKEEKKEEEE 1690
Score = 64 (27.6 bits), Expect = 5.2e-37, Sum P(3) = 5.2e-37
Identities = 35/118 (29%), Positives = 53/118 (44%)
Query: 1084 SSPDDKSLPMVPNLETAPPGFD-IPIEKHN--EQSRNQNNPEVKG--EETPVSSEAPAST 1138
S+P D P P APP D I +E++N E+ + EVK E V P +
Sbjct: 1566 STPGDTQ-PNTP--APAPPAEDGIKVEENNLKEEESAEAEKEVKSVPPEAAVECTQPPAP 1622
Query: 1139 EAFEQEKVT----NTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEI 1192
A E+EKV V A++ ++T AMET P + +EK E++ ++
Sbjct: 1623 -ASEEEKVPVEPPEGEEKVEKAEVK--ERT---EEAMETDPKGNADVEKVEEKAAVDL 1674
Score = 60 (26.2 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 27/115 (23%), Positives = 48/115 (41%)
Query: 1764 QPSSSLAPWEAKIDGSS-EKDPVSSQSVLEGSKETVAEAGDQ-MDISIMPEKLPEHLDIP 1821
QP++ AP DG E++ + + E KE + + ++ + P E +P
Sbjct: 1572 QPNTP-APAPPAEDGIKVEENNLKEEESAEAEKEVKSVPPEAAVECTQPPAPASEEEKVP 1630
Query: 1822 ASLATPEEKTEGSEKDPDSSFAAQEDPKES--VVEAGDQMGVSLGGATVMEKSSE 1874
EEK E +E + A + DPK + V + ++ V L V +K +
Sbjct: 1631 VEPPEGEEKVEKAEVKERTEEAMETDPKGNADVEKVEEKAAVDLTPIVVEDKEEK 1685
Score = 50 (22.7 bits), Expect = 3.9e-37, Sum P(2) = 3.9e-37
Identities = 34/132 (25%), Positives = 53/132 (40%)
Query: 2063 PSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPV- 2121
PS + + P A + I E N+++ + + S E +E P
Sbjct: 1565 PSTPGDTQPNTPAPAPPAEDGIKVEEN-NLKEEESAEAEKEVKSVP-PEAAVECTQPPAP 1622
Query: 2122 GSEKESIASAVPLDESKGPDAEVSSQT--AIEGG--GVVSIP-VPEEADGPASFLAAE-- 2174
SE+E + P E K AEV +T A+E G + V E+A + + E
Sbjct: 1623 ASEEEKVPVEPPEGEEKVEKAEVKERTEEAMETDPKGNADVEKVEEKAAVDLTPIVVEDK 1682
Query: 2175 EEKNECSDKEPV 2186
EEK E +K+ V
Sbjct: 1683 EEKKEEEEKKEV 1694
Score = 49 (22.3 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 33/139 (23%), Positives = 51/139 (36%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
E KK S TPT TP G PN P ++ V ++ A K
Sbjct: 1547 EENKKMSQPGSPSPKTPTPSTP--GDTQPN-TPAPAPPAEDGIKVEENNLKEEESAEAEK 1603
Query: 1064 -TEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPE 1122
+++ PE + + A +S ++K VP PP + +EK + R + E
Sbjct: 1604 EVKSVPPEAAVEC--TQPPAPASEEEK----VP---VEPPEGEEKVEKAEVKERTEEAME 1654
Query: 1123 V--KGEETPVSSEAPASTE 1139
KG E A+ +
Sbjct: 1655 TDPKGNADVEKVEEKAAVD 1673
Score = 48 (22.0 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 557 SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSA 603
+P P P + + E N ES + V S+P + P A
Sbjct: 1575 TPAPAPPAEDGIKVEENNLKEEESAEAEKEVKSVPPEAAVECTQPPA 1621
Score = 43 (20.2 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 355 EEQWTEEEFEKMCQAESSDSPK-LKEEGLEKSL 386
+E+ EEE +K ++ ++PK L +E +K++
Sbjct: 1682 KEEKKEEEEKKEVMLQNGETPKDLNDEKQKKNI 1714
Score = 43 (20.2 bits), Expect = 7.9e-35, Sum P(3) = 7.9e-35
Identities = 28/111 (25%), Positives = 48/111 (43%)
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
AE G +++ + + E+ + PE E ++ P + A E+ K V +
Sbjct: 1582 AEDGIKVEENNLKEEESAEAEKEVKSVPPEAAVECTQ--PPAP--ASEEEKVPVEPPEGE 1637
Query: 1859 MGVSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKE 1909
V A V E++ E + T P A+ E++ E D T I V++ KE
Sbjct: 1638 EKVEK--AEVKERTEEAMETDPKGNADVEKVEEKAAVDLTPI---VVEDKE 1683
Score = 42 (19.8 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 1316 SVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAE--VAKCPSDAIV 1369
S KT + P + +P + +P V + E S EAE V P +A V
Sbjct: 1559 SPKTPTPSTPGDTQPNTPAPAPPAEDGIKVEENNLKEEESAEAEKEVKSVPPEAAV 1614
Score = 41 (19.5 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ E++ ++ Q P T + +TPA P + G + + + E S+
Sbjct: 1541 PELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPAEDG-IKVEENNLKEEESA 1599
Score = 40 (19.1 bits), Expect = 5.2e-37, Sum P(3) = 5.2e-37
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDG 2031
E +EEEK E+ + ++DE + ++ ++ DG
Sbjct: 1684 EKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNI-ADG 1725
Score = 39 (18.8 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 1989 ETVQEEEKTELSCEKQPIGSS-VD--DESKGPEVEPCVQMD 2026
E + +E+TE + E P G++ V+ +E ++ P V D
Sbjct: 1641 EKAEVKERTEEAMETDPKGNADVEKVEEKAAVDLTPIVVED 1681
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 470 (170.5 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 107/245 (43%), Positives = 149/245 (60%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHY 51
+E+N + G++ + N++MELR CNHPYL E++ +T P
Sbjct: 460 LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQ 519
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 520 LQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVR 579
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 580 GNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 639
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLE 228
RIGQ + V + R T + E ++ A KLG+ QS++ N + ++ +E
Sbjct: 640 RIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 699
Query: 229 SLLRE 233
LLR+
Sbjct: 700 DLLRK 704
Score = 67 (28.6 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 35/178 (19%), Positives = 68/178 (38%)
Query: 918 PSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKEIFSETCSSK 977
P I + V + K + +++K GS+ + + K + + D+A K+ + C ++
Sbjct: 1394 PPIVPSTPVQEEKTTEQTESKVE---GSENPAAKEKSDIKEETDIAD--KDT-KQDCDAE 1447
Query: 978 AKTGD-----SSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTC-SVTPTVETPPPGFNS 1031
A+TG + D + +K DDK+ S P G N
Sbjct: 1448 AETGSVKCELKDIEMSTDVDPKSISEKGSEEDEEEKLDDDDKSEESSQPEAGAVSQGKNF 1507
Query: 1032 PNENPGELTGTKN---DASVRGDHTPVSGHTLASKTEALK--PENKAQAGRIENIANS 1084
E+ ++ ++ D D P L +T A P+++ R++NI +
Sbjct: 1508 DEESNASMSTARDETRDGFYMEDGDPSVVQLLHERTFAFSFWPKDRVMINRLDNICEA 1565
Score = 57 (25.1 bits), Expect = 1.8e-37, Sum P(5) = 1.8e-37
Identities = 35/122 (28%), Positives = 53/122 (43%)
Query: 1626 SENMG--EKDDISSEHAFGSSLVLQDKASEAEIGD-RIDEPQVD---GFSPRSMSGVVDE 1679
SEN EK DI E QD +EAE G + + ++ P+S+S E
Sbjct: 1418 SENPAAKEKSDIKEETDIADKDTKQDCDAEAETGSVKCELKDIEMSTDVDPKSISEKGSE 1477
Query: 1680 LVDEA----GDHMGVSHSP-VHVVEREKS-EELGLPSLSSATKEEKIDGSLDKDPDSNLV 1733
+E D S P V + K+ +E S+S+A ++E DG +D D ++V
Sbjct: 1478 EDEEEKLDDDDKSEESSQPEAGAVSQGKNFDEESNASMSTA-RDETRDGFYMEDGDPSVV 1536
Query: 1734 VL 1735
L
Sbjct: 1537 QL 1538
Score = 56 (24.8 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 1717 EEKIDGS-----LDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSD 1761
EE ++GS LDK DS+ +LED G+++D G + N +D
Sbjct: 2201 EENLEGSDAEESLDKTADSS--ILEDEIAQ-GEELDSLDGGEEIENNEND 2247
Score = 54 (24.1 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 44/186 (23%), Positives = 68/186 (36%)
Query: 2028 RGDG---IVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNII 2084
RG G V P G +P +V + S + G S+ P A+ + I
Sbjct: 1372 RGTGNANTVSSLHPVGAGCSQTPPIVPSTPVQEEKTTEQTESKV-EG-SENPAAKEKSDI 1429
Query: 2085 DAEGGGNMRQTVPQDLGLPLSSSDVE-EEKIEGFSKPVGSEKESIASAVPLDESKGPDAE 2143
E + T QD + V+ E K S V + S + +E K D +
Sbjct: 1430 KEETDIADKDT-KQDCDAEAETGSVKCELKDIEMSTDVDPKSISEKGSEEDEEEKLDDDD 1488
Query: 2144 VSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAF 2203
S +++ G VS + + AS A +E + E SV Q+ + A +F
Sbjct: 1489 KSEESSQPEAGAVSQGKNFDEESNASMSTARDETRDGFYMEDGDPSVVQLLHERTFAFSF 1548
Query: 2204 EPMDVV 2209
P D V
Sbjct: 1549 WPKDRV 1554
Score = 52 (23.4 bits), Expect = 5.8e-37, Sum P(5) = 5.8e-37
Identities = 27/109 (24%), Positives = 46/109 (42%)
Query: 1748 CCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSS-----EKDPVSSQSVLEGSKETV---- 1798
C Q+ +VP S Q + E+K++GS EK + ++ + K+T
Sbjct: 1390 CSQTPPIVP---STPVQEEKTTEQTESKVEGSENPAAKEKSDIKEETDI-ADKDTKQDCD 1445
Query: 1799 --AEAG----DQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSS 1841
AE G + DI + + P+ + S EEK + +K +SS
Sbjct: 1446 AEAETGSVKCELKDIEMSTDVDPKSISEKGSEEDEEEKLDDDDKSEESS 1494
Score = 51 (23.0 bits), Expect = 1.7e-38, Sum P(5) = 1.7e-38
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 2162 EEADGPASFLAAEEEKN-ECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALEN 2217
E+A A ++E+N E SD E + E E E +D +DG +EN
Sbjct: 2187 EKATDKTEGTAFKDEENLEGSDAEESLDKTADSSILEDEIAQGEELDSLDGGEEIEN 2243
Score = 51 (23.0 bits), Expect = 4.6e-37, Sum P(5) = 4.6e-37
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 518 STPMQPKGRGRRIQ-SGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
S P Q + R R+I+ E+ +RR + +V + S N Q + L+ +
Sbjct: 1634 SVPRQRRRRRRKIEIEAERAAKRRNL-MEMVAQLRESQVVSE------NGQEKVVDLSKA 1686
Query: 577 GGESTATDGNVSSIPTAPVPDSVS 600
E+T++ N SS+ + + +VS
Sbjct: 1687 SREATSSTSNFSSVTSKFILPNVS 1710
Score = 50 (22.7 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 19/77 (24%), Positives = 31/77 (40%)
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
A AG Q + EK + + + EE EGS+ + A E + G++
Sbjct: 2174 ALAGLQNAVGSNEEKATDKTE--GTAFKDEENLEGSDAEESLDKTADSSILEDEIAQGEE 2231
Query: 1859 MGVSLGGATVMEKSSED 1875
+ SL G +E + D
Sbjct: 2232 LD-SLDGGEEIENNEND 2247
Score = 50 (22.7 bits), Expect = 2.9e-37, Sum P(5) = 2.9e-37
Identities = 21/101 (20%), Positives = 46/101 (45%)
Query: 1098 ETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNL-A 1156
+T P P+++ E++ Q +V+G E P + E ++ E+ + + + + A
Sbjct: 1392 QTPPIVPSTPVQE--EKTTEQTESKVEGSENPAAKE---KSDIKEETDIADKDTKQDCDA 1446
Query: 1157 DLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVK 1197
+ + C + +E + D P K + + G+E D + K
Sbjct: 1447 EAETGSVKCELKD-IEMSTDVD-P--KSISEKGSEEDEEEK 1483
Score = 48 (22.0 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 1128 TPVSSEAPASTEAFEQEKVTNTSSFVNLADLS-SDDKTCSVTPAMETAPGFDIPIEKGVE 1186
TP + ++P +F + S + A +S S+D T S + E A +P ++
Sbjct: 1589 TPTAVDSPLQKRSFAE------LSMIGQASISGSEDITASPQLSKEDALNLSVPRQRRRR 1642
Query: 1187 QSGTEIDAK 1195
+ EI+A+
Sbjct: 1643 RRKIEIEAE 1651
Score = 48 (22.0 bits), Expect = 1.8e-37, Sum P(5) = 1.8e-37
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 1068 KPENKAQAGRIENIANSSPDDK--SLPMVPN 1096
KP I+ ANS P+DK S+ + PN
Sbjct: 1096 KPTRTPFKDEIDEFANSPPEDKEESIEIHPN 1126
Score = 48 (22.0 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGP 2017
V + D+K AE +L GG E +E+E E + P +D+ + P
Sbjct: 1059 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSP 1113
Score = 45 (20.9 bits), Expect = 7.0e-38, Sum P(5) = 7.0e-38
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 1215 FKPENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSED 1264
FK E +G E+ D D S++++ I + + + G N D
Sbjct: 2198 FKDEENLEGSDAEESLDKTADSSILEDEIAQGEELDSLDGGEEIENNEND 2247
Score = 45 (20.9 bits), Expect = 4.6e-37, Sum P(5) = 4.6e-37
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 659 GVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSN 718
G R G + G P S+++ + + + S + L L S+ G Q L N
Sbjct: 1945 GPVVREEGASRR-GRRPKSEIAKAAAAAAAVASTSGINPL-LMNSLFAGMDLTSLQNLQN 2002
Query: 719 KIQVQ-------PCGVATSADVAGPDQKPA 741
+Q P G+AT+A G + PA
Sbjct: 2003 LQSLQLAGLMGFPPGLATAAAAGGDAKNPA 2032
Score = 45 (20.9 bits), Expect = 9.4e-36, Sum P(6) = 9.4e-36
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 505 PVAPG-SQSASACPSTPMQPKGRGRRIQS---GEQVPRRRGK 542
PV G SQ+ PSTP+Q + + +S G + P + K
Sbjct: 1385 PVGAGCSQTPPIVPSTPVQEEKTTEQTESKVEGSENPAAKEK 1426
Score = 42 (19.8 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 534 EQVP---RRRGKKIGLVLPAASDDIP 556
E+VP +R GKK+G + D+P
Sbjct: 1884 ERVPVVNKRNGKKMGGAMAPPMKDLP 1909
Score = 41 (19.5 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQ 368
YG G R ++ S Y+ Q TE++ E +C+
Sbjct: 854 YGWG-RWTDILSHGRYKRQLTEQDVETICR 882
Score = 41 (19.5 bits), Expect = 1.8e-37, Sum P(5) = 1.8e-37
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRID 1661
D EG E EN+ D S S +L+D+ ++ E D +D
Sbjct: 2191 DKTEGTAFKDE---ENLEGSDAEESLDKTADSSILEDEIAQGEELDSLD 2236
Score = 41 (19.5 bits), Expect = 9.3e-37, Sum P(5) = 9.3e-37
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ ++ L GAD+ E V +PE
Sbjct: 987 RQEVIGDQADRI--LEGADSSEVDVWIPE 1013
Score = 40 (19.1 bits), Expect = 9.4e-36, Sum P(6) = 9.4e-36
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 572 SLNPSGGEST-ATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNL 628
SL E T A + ++ ++P +P SP G +DP + + +N E T L
Sbjct: 1772 SLTVEDAEVTKAFEEDMEALPARNIP---SP-------GQLDPDTRIPVINLEDGTRL 1819
Score = 38 (18.4 bits), Expect = 1.9e-36, Sum P(5) = 1.9e-36
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 1114 QSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
+S ++ P K S+ A +E F EK
Sbjct: 818 ESDSEEKPSTKPRRPQDKSQGYARSECFRVEK 849
Score = 37 (18.1 bits), Expect = 2.4e-36, Sum P(5) = 2.4e-36
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 1113 EQSRNQNNPEVKGEETPVSSE 1133
E R +PE K TP E
Sbjct: 1085 EFDREDEDPEYKPTRTPFKDE 1105
Score = 37 (18.1 bits), Expect = 2.0e-35, Sum P(5) = 2.0e-35
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 1763 CQPSSSLAPW-EAKIDGSSEKD 1783
CQPS L W E G +KD
Sbjct: 1318 CQPSLDLPEWWEC---GKHDKD 1336
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 460 (167.0 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 122/401 (30%), Positives = 208/401 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +++ GKL +
Sbjct: 1005 EALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLML 1064
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN
Sbjct: 1065 LQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNA 1124
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1125 PGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1184
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ E K+E
Sbjct: 1185 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGE 1244
Query: 243 XXXXXXXXXXXRSES-------EIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP 295
+E+ D E D Q E ++++ K+ + + + + + +
Sbjct: 1245 NKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF-KVAQYVVREEDKIEEIE 1303
Query: 296 SRLVT-DDDLKALYEAMKI---YDAPKTGVSPNVGV-KRKGEHLGALDTQHYGRGKRARE 350
++ ++++ Y + Y+ + ++ N+G KR + + D + ++
Sbjct: 1304 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEY 1363
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 391
EE+ +E+F++ + +L+ E +K LP +++
Sbjct: 1364 SVGSEEE--DEDFDERPEGRRQSKRQLRNEK-DKPLPPLLA 1401
Score = 68 (29.0 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 28/94 (29%), Positives = 39/94 (41%)
Query: 496 SSQPTTAFVPVAPGSQSA-SACPSTPMQP----KGRGRRI-------QSGEQVPRRRGKK 543
+S PT P P + +A S C S P P KG G R ++ E+ P + K
Sbjct: 1531 ASSPTKTS-PTTPEASAANSPCTSKPATPAPSEKGEGMRTPLEKDEAENQEEKPEKNSKT 1589
Query: 544 IGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSG 577
G + A +D PSP P +P+ L G
Sbjct: 1590 -GEKMEAEADT-PSPAPSLGERLEPRKVPLEDEG 1621
Score = 63 (27.2 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 33/138 (23%), Positives = 49/138 (35%)
Query: 1006 AKKQSSDDKTCSVTPTVE------TPPPGFNSPNEN-PGELTGTKNDASVRGDHTPVSGH 1058
+ + SS KT TP T P +P+E G T + D + + P
Sbjct: 1528 SSRASSPTKTSPTTPEASAANSPCTSKPATPAPSEKGEGMRTPLEKDEAENQEEKPEKNS 1587
Query: 1059 TLASKTEALK--PENKAQAG-RIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQS 1115
K EA P G R+E P + P P PG+ E+S
Sbjct: 1588 KTGEKMEAEADTPSPAPSLGERLE--PRKVPLEDEGPGGPGEMEPEPGY----RGDREKS 1641
Query: 1116 RNQNNPEVKGEETPVSSE 1133
++ P +GEE P+ +
Sbjct: 1642 ATESTPGERGEEKPLDGQ 1659
Score = 62 (26.9 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPS 614
+P PDP + + S + +P+ T + + ++ P P + +PS KG+ G P
Sbjct: 1514 MPELMPDPSADSKRSSRASSPTKTSPTTPEASAANSPCTSKPATPAPSE-KGE-GMRTPL 1571
Query: 615 SAVAALNSE 623
A N E
Sbjct: 1572 EKDEAENQE 1580
Score = 55 (24.4 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
Identities = 22/88 (25%), Positives = 33/88 (37%)
Query: 456 KVEKDAMTGQSTSASASLPXXXXXXXXXXXAQHV-MVGIAPSSQPTTAFVPVAPGSQSAS 514
K EK++ TG+ A A P + V + P P G + S
Sbjct: 1582 KPEKNSKTGEKMEAEADTPSPAPSLGERLEPRKVPLEDEGPGGPGEMEPEPGYRGDREKS 1641
Query: 515 ACPSTPMQPKGRGRRIQSGEQVPRRRGK 542
A STP + +G + + EQ R G+
Sbjct: 1642 ATESTPGE-RGEEKPLDGQEQRERPEGE 1668
Score = 52 (23.4 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 1079 ENIANSSPDDKSLPMVPNLETAPPGFDIPIEK---HNEQSRNQNNPEVKGE----ETPVS 1131
E A +SP S P P G P+EK N++ + + N + GE E
Sbjct: 1543 EASAANSPCT-SKPATPAPSEKGEGMRTPLEKDEAENQEEKPEKNSKT-GEKMEAEADTP 1600
Query: 1132 SEAPASTEAFEQEKV 1146
S AP+ E E KV
Sbjct: 1601 SPAPSLGERLEPRKV 1615
Score = 47 (21.6 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 1304 SPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSG-----P--QNSAVGFCDKSEIPS- 1355
S +S T+ S + + N P +P + +P G P ++ A +K E S
Sbjct: 1529 SRASSPTKTSPTTPEASAANSPCTSKPATPAPSEKGEGMRTPLEKDEAENQEEKPEKNSK 1588
Query: 1356 ----MEAEVAKCPSDA-IVNNLLE---TPLDIKSIGGP 1385
MEAE A PS A + LE PL+ + GGP
Sbjct: 1589 TGEKMEAE-ADTPSPAPSLGERLEPRKVPLEDEGPGGP 1625
Score = 43 (20.2 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 1025 PPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
P PG+ E + T++ RG+ P+ G + E
Sbjct: 1630 PEPGYRGDREK----SATESTPGERGEEKPLDGQEQRERPE 1666
Score = 41 (19.5 bits), Expect = 5.4e-38, Sum P(3) = 5.4e-38
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSM-SGVVDELVDEAGDHMG 1689
+ A+E+ G+R +E +DG R G +L A D G
Sbjct: 1639 EKSATESTPGERGEEKPLDGQEQRERPEGETGDLGKRAEDVKG 1681
>UNIPROTKB|F1N8K9 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 GeneTree:ENSGT00560000076896
EMBL:AADN02065411 EMBL:AADN02065412 EMBL:AADN02065413
IPI:IPI00592819 Ensembl:ENSGALT00000023600 ArrayExpress:F1N8K9
Uniprot:F1N8K9
Length = 559
Score = 422 (153.6 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 86/179 (48%), Positives = 120/179 (67%)
Query: 24 MELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFS 83
MEL+ CNH YL + ++ + + L ++R GKL +LD+LL +L+ +RVL FS
Sbjct: 1 MELKKCCNHCYLIK-PPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFS 59
Query: 84 TMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGV 143
M R+LD++ +YL ++Q+ + RLDG G R +D FN + S F FLLS RAGG+G+
Sbjct: 60 QMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGI 119
Query: 144 NLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 202
NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T +VEE + A+ K+
Sbjct: 120 NLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKM 178
Score = 42 (19.8 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 28/98 (28%), Positives = 42/98 (42%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSH----SPVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH +P+H
Sbjct: 423 GCIKALKDNSSGQERAGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELAPLH 473
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV 1734
EE + TK D K+ DSNL+V
Sbjct: 474 KSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLV 511
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 461 (167.3 bits), Expect = 6.9e-39, Sum P(2) = 6.9e-39
Identities = 105/231 (45%), Positives = 140/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L V G
Sbjct: 150 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSG 204
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+
Sbjct: 205 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSIN 264
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N+ +S F+F+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V
Sbjct: 265 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 324
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V RF T TVEE++ AE KL + + I G D N + + E L+ +
Sbjct: 325 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 375
Score = 42 (19.8 bits), Expect = 6.9e-39, Sum P(2) = 6.9e-39
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P + A +EE+ + + P+ ++E KE
Sbjct: 517 IGYKVPRSPDLPNAAQAQKEEQLKIDEAGPLNDE--ELEEKE 556
Score = 42 (19.8 bits), Expect = 6.9e-39, Sum P(2) = 6.9e-39
Identities = 34/162 (20%), Positives = 62/162 (38%)
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHK 1625
D DI+ G A ++ + ES+ + +D V G D E I
Sbjct: 392 DEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEW 451
Query: 1626 SE--NMGEKDDISSEHAFGSSL-VLQDKASEAEIGDRIDEPQVDGFS--PRSMSGVVDEL 1680
E K + +++ F +L V + KA +A + +P V F P + ++++
Sbjct: 452 IEPPKRERKANYAADAYFREALRVSEPKAPKAPRPPK--QPNVQDFQFFPPRLFELLEKE 509
Query: 1681 VDEAGDHMG--VSHSP--VHVVEREKSEELGLPSLSSATKEE 1718
+ +G V SP + + +K E+L + EE
Sbjct: 510 ILYYRKTIGYKVPRSPDLPNAAQAQKEEQLKIDEAGPLNDEE 551
Score = 40 (19.1 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 1124 KGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
K E+ + P + E E+++ T F N
Sbjct: 535 KEEQLKIDEAGPLNDEELEEKEKLLTQGFTN 565
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 457 (165.9 bits), Expect = 7.0e-39, Sum P(2) = 7.0e-39
Identities = 100/221 (45%), Positives = 135/221 (61%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK 71
G + + N +M+LR NHPYL AE +L V GK+ +LD+LLPK
Sbjct: 387 GKVEKMRLQNILMQLRKCTNHPYLFD-GAEPGPPYTTDTHL---VYNSGKMAILDKLLPK 442
Query: 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131
L+ RVL FS MTR+LD++EDY ++ Y Y RLDG T DR I +FN +S F+
Sbjct: 443 LQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFL 502
Query: 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191
F+LS RAGG+G+NL AD VII+D+DWNPQ+DLQA RAHRIGQK+ V V R T TVE
Sbjct: 503 FMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVE 562
Query: 192 EQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
E++ AE KL + I G +N S + ++ + +++R
Sbjct: 563 EKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIR 603
Score = 55 (24.4 bits), Expect = 7.0e-39, Sum P(2) = 7.0e-39
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 550 AASDDIPSPGPDPKTNEQPQSE 571
+AS + P+P P PK +++ +SE
Sbjct: 993 SASSNTPAPAPQPKASQKRKSE 1014
Score = 41 (19.5 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 566 EQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSS 615
E+ + + P G S A G+ SS AP P ++ K +S + SS
Sbjct: 974 ERAEKKKKAPKGSVS-AGSGSASSNTPAPAPQP--KASQKRKSEVVATSS 1020
Score = 37 (18.1 bits), Expect = 5.4e-37, Sum P(2) = 5.4e-37
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 763 SSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSK 797
S S +TPA P EV++ +S+SK
Sbjct: 991 SGSASSNTPAPAPQPKASQKRKS--EVVATSSNSK 1023
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 462 (167.7 bits), Expect = 8.0e-39, Sum P(2) = 8.0e-39
Identities = 101/232 (43%), Positives = 144/232 (62%)
Query: 2 KRVEENLGSIGNSKGRS-VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
K ++ G++G +G++ + N VM+LR CNHPYL + AE +L + G
Sbjct: 435 KDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFE-GAEPGPPYTTDEHL---IFNSG 490
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LL +LK RVL FS M+RLLD++EDY F+ + Y R+DG TS +R ID
Sbjct: 491 KMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAID 550
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
++N+ +S F+FLL+ RAGG+G+NL ADTVI+FD+DWNPQ DLQA RAHRIGQK+ V
Sbjct: 551 EYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVH 610
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
V RF T +EE+V A KL + I G S + ++ L +++
Sbjct: 611 VYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKDDLLDMIQ 662
Score = 51 (23.0 bits), Expect = 8.0e-39, Sum P(2) = 8.0e-39
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 1625 KSENMGE-KDDISSEHAFGSSLVLQDKASEAEIGDRIDE 1662
K+ ++G KDD+ FG+ + + KAS+ + ID+
Sbjct: 646 KTASLGNSKDDLLDMIQFGAKNMFEKKASKVTVDADIDD 684
Score = 37 (18.1 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKS----LPTVV 390
VR YE+ ++ A D+P + E S LPT +
Sbjct: 1056 VREYEQPDANKKKRSRTSATREDTPLSQNESTRASTVPNLPTTM 1099
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 469 (170.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 105/227 (46%), Positives = 146/227 (64%)
Query: 21 NSVMELRNICNHPYL-----SQLHAE--EVDTLIPKHY-LPPIVRLCGKLEMLDRLLPKL 72
N++MELR CNHPYL ++ +E E ++P + + +VR GKL ++D+LLPKL
Sbjct: 1030 NTMMELRKCCNHPYLITGAEEKIISEFREATPVVPPDFHVQAMVRSSGKLVLIDKLLPKL 1089
Query: 73 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132
+A H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F++ DS F+F
Sbjct: 1090 RAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVF 1149
Query: 133 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 192
LL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V + R T + E
Sbjct: 1150 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYER 1209
Query: 193 QVRASAEHKLGVAN---QSITAGFFDNNTSA---EDRREYLESLLRE 233
++ A KLG+ QS++ DN+ S + ++ +E LLR+
Sbjct: 1210 EMFDKASLKLGLDKAVLQSMSGR--DNHLSGPIQQFTKKEIEDLLRK 1254
Score = 52 (23.4 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 1813 KLPEHLDIPASLATPEEKTEGSEKDPDSSF-AAQEDPKESVVEAGDQMGVSLG 1864
+LP+ D + PE K ++KDP+ + D + SVV+ + + G
Sbjct: 1623 ELPDGGDFDRDIEDPEYKPLHAQKDPEDEIDSLMMDEEISVVDGEEATAMPSG 1675
Score = 41 (19.5 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 1261 TSEDSSKMPLETPLIMKSTEGP 1282
T+EDS + LETP ST+ P
Sbjct: 2000 TTEDSIQTALETP---HSTDWP 2018
Score = 38 (18.4 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 295 PSRLVTDDDLKALYEAMKIYDAPKTGV 321
P+ L T+D ++ E D PK V
Sbjct: 1996 PADLTTEDSIQTALETPHSTDWPKDRV 2022
Score = 37 (18.1 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 724 PCGVATSADVAGPDQKPA------EQSVRVVQSNQPINLPATHDSSSQPSG 768
P G D+ P+ KP E + + ++ I++ ++++ PSG
Sbjct: 1625 PDGGDFDRDIEDPEYKPLHAQKDPEDEIDSLMMDEEISVVDGEEATAMPSG 1675
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 463 (168.0 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 109/233 (46%), Positives = 144/233 (61%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L +V G
Sbjct: 412 MKDIDI-LNSAGKMDKMRLLNVLMQLRKCCNHPYLFD-GAEPGPPYTTDLHL--VVN-SG 466
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+
Sbjct: 467 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISIN 526
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
FN+ +S F+F+LS RAGG+G+NL AD VII+D+DWNPQVDLQA RAHRIGQK+ V
Sbjct: 527 AFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVR 586
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESLLR 232
V RF T TVEE++ AE KL + + I G D + + + E L S++R
Sbjct: 587 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDPSMNKLGKDEML-SIIR 638
Score = 47 (21.6 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P S +EE+ + + EP+ ++E KE
Sbjct: 778 IGYKVPRNPDLPNSAEMQKEEQAKIDEAEPLNEE--ELEEKE 817
Score = 43 (20.2 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 1690 VSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLD 1725
+ + + EREK+E+ +S+ ++ K DG+ D
Sbjct: 990 IERENMELEEREKAEKKKRGPRTSSAQKRKQDGTPD 1025
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 461 (167.3 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 105/231 (45%), Positives = 140/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L V G
Sbjct: 428 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSG 482
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+
Sbjct: 483 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSIN 542
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N+ +S F+F+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V
Sbjct: 543 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 602
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V RF T TVEE++ AE KL + + I G D N + + E L+ +
Sbjct: 603 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 653
Score = 49 (22.3 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P + A +EE+ + + EP+ ++E KE
Sbjct: 795 IGYKVPRSPDLPNAAQAQKEEQLKIDEAEPLNDE--ELEEKE 834
Score = 39 (18.8 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 1124 KGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
K E+ + P + E E+++ T F N
Sbjct: 813 KEEQLKIDEAEPLNDEELEEKEKLLTQGFTN 843
Score = 39 (18.8 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 34/162 (20%), Positives = 61/162 (37%)
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHK 1625
D DI+ G A ++ + ES+ + +D V G D E I
Sbjct: 670 DEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEW 729
Query: 1626 SE--NMGEKDDISSEHAFGSSL-VLQDKASEAEIGDRIDEPQVDGFS--PRSMSGVVDEL 1680
E K + + + F +L V + KA +A + +P V F P + ++++
Sbjct: 730 IEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPK--QPNVQDFQFFPPRLFELLEKE 787
Query: 1681 VDEAGDHMG--VSHSP--VHVVEREKSEELGLPSLSSATKEE 1718
+ +G V SP + + +K E+L + EE
Sbjct: 788 ILYYRKTIGYKVPRSPDLPNAAQAQKEEQLKIDEAEPLNDEE 829
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 472 (171.2 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 101/213 (47%), Positives = 137/213 (64%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HY 51
+E+N + G++ + N++MELR CNHPYL + E++ DT P +
Sbjct: 640 LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFH 699
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG
Sbjct: 700 LQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVR 759
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 760 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 819
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 204
RIGQ + V V R T + E ++ A KLG+
Sbjct: 820 RIGQNKAVKVYRLVTRNSYEREMFDRASLKLGL 852
Score = 38 (18.4 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 1584 SSSKDIIAESAKADVVLDEHGKVQ 1607
S++KD +AE ++A+ DE K++
Sbjct: 984 SATKDELAELSEAESEGDEKPKLR 1007
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 454 (164.9 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 109/247 (44%), Positives = 143/247 (57%)
Query: 4 VEENLGSIGNSKGRSVHN------SVMELRNICNHPYLSQLHAEEV--------DTLIPK 49
+E+N + SKG + HN ++MELR CNHPYL E++ P
Sbjct: 637 LEKNFSFL--SKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPD 694
Query: 50 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 109
L +++ GKL ++D+LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 695 FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGR 754
Query: 110 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 169
G R A ID+F + DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR
Sbjct: 755 VRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQAR 814
Query: 170 AHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREY 226
HRIGQ + V V R T + E ++ A KLG+ Q I N + E
Sbjct: 815 CHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME- 873
Query: 227 LESLLRE 233
+E LLR+
Sbjct: 874 VEDLLRK 880
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 455 (165.2 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 121/401 (30%), Positives = 208/401 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +++ GKL +
Sbjct: 1056 EALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLL 1115
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN
Sbjct: 1116 LQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNA 1175
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1176 PGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1235
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ E K+E
Sbjct: 1236 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGE 1295
Query: 243 XXXXXXXXXXXRSES-------EIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP 295
+E+ D + D Q E ++++ K+ + + + + + +
Sbjct: 1296 NKEEDSSVIHYDNEAIARLLDRNQDATDDTDVQNMNEYLSSF-KVAQYVVREEDKIEEIE 1354
Query: 296 SRLVT-DDDLKALYEAMKI---YDAPKTGVSPNVGV-KRKGEHLGALDTQHYGRGKRARE 350
++ ++++ Y + Y+ + ++ N+G KR + + D + ++
Sbjct: 1355 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEY 1414
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 391
EE+ +E+F++ + +L+ E +K LP +++
Sbjct: 1415 SVGSEEE--DEDFDERPEGRRQSKRQLRNEK-DKPLPPLLA 1452
Score = 74 (31.1 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 38/139 (27%), Positives = 56/139 (40%)
Query: 1006 AKKQSSDDKTCSVTP---TVETP---PPGFNSPNEN-PGELTGTKNDASVRGDHTPVSGH 1058
+ + SS KT TP T +P P +P+E G T + D + + P
Sbjct: 1579 SSRASSPTKTSPTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPEKSS 1638
Query: 1059 TLASK--TEALKPENKAQAG-RIENIANSSPDDKSLPMVPNLETAP-PGFDIPIEKHNEQ 1114
+ K TE P G R+E+ DD P VP E P PG+ E+
Sbjct: 1639 KVGEKMETEIDSPSPAPSLGERLEHRKILLEDDA--PGVPG-EIEPEPGY----RGDREK 1691
Query: 1115 SRNQNNPEVKGEETPVSSE 1133
S ++ P +GEE P+ +
Sbjct: 1692 SASEPTPGERGEEKPLDGQ 1710
Score = 62 (26.9 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 24/80 (30%), Positives = 32/80 (40%)
Query: 496 SSQPTTAFVPVAP-GSQSASACPSTPMQP----KGRGRRI---QSGEQVPRRRGKKIGLV 547
+S PT P P S + S C S P P KG G R + + P + +K V
Sbjct: 1582 ASSPTKTS-PTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPEKSSKV 1640
Query: 548 LPAASDDIPSPGPDPKTNEQ 567
+I SP P P E+
Sbjct: 1641 GEKMETEIDSPSPAPSLGER 1660
Score = 56 (24.8 bits), Expect = 4.5e-35, Sum P(4) = 4.5e-35
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKG 606
+P PDP + + S + +P+ T + + ++ P P + +PS KG
Sbjct: 1565 MPELMPDPSADSKRSSRASSPTKTSPTTPEASTTNSPCTSKPATPAPSE-KG 1615
Score = 45 (20.9 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 31/148 (20%), Positives = 59/148 (39%)
Query: 1790 VLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEK------TEGSEKDPDSSFA 1843
VL +E +++ + D++ +P L I A L E ++G+E P +F
Sbjct: 1916 VLNQLEELLSDM--KADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAFP 1973
Query: 1844 A---QEDPKESVVEAGDQMG-VSLGGATVMEKSSEDLAT-----PPLSLANEEEMIEGFD 1894
P + +G ++ GA + + T PP+ + E+EM+
Sbjct: 1974 PGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITATTNGPPVLVKKEKEMVGALV 2033
Query: 1895 NDPTGISMAVMDSKECAAEAADQMCVSE 1922
+D G+ D KE A + +C+ +
Sbjct: 2034 SDGLGL-----DRKE--PRAGEVICIDD 2054
Score = 45 (20.9 bits), Expect = 6.1e-34, Sum P(4) = 6.1e-34
Identities = 16/80 (20%), Positives = 33/80 (41%)
Query: 1304 SPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKC 1363
S +S T+ S + + N P +P + +P G + D +E P + E +
Sbjct: 1580 SRASSPTKTSPTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPEKSSK 1639
Query: 1364 PSDAIVNNLLETPLDIKSIG 1383
+ + + ++P S+G
Sbjct: 1640 VGEKMETEI-DSPSPAPSLG 1658
Score = 37 (18.1 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+ ASE G+R +E +DG R + E GD +G V+ ++ LG
Sbjct: 1690 EKSASEPTPGERGEEKPLDGQEHR------ERTEGETGD-LGKRED----VKADRELRLG 1738
Query: 1708 LPS---LSSATKEEKID 1721
P + +EEK++
Sbjct: 1739 PPRDEPRPNGRREEKVE 1755
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 451 (163.8 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 95/194 (48%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + E+ + + L ++R GKL +LD+L
Sbjct: 750 GTRGSTSG--FLNIVMELKKCCNHCYLIRA-PEDSERETGQEVLQSLIRSSGKLILLDKL 806
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 807 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 866
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 867 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 926
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 927 TVEEEIIERAKKKM 940
Score = 66 (28.3 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 37/134 (27%), Positives = 54/134 (40%)
Query: 1053 TPVSGHT--LASKTEALKPENKAQAGRIEN-IANSSPDDKSLPMVPNLETAPPGFD-IPI 1108
T SG L + +K ENKA + E+ + SSP P E G + P
Sbjct: 1337 TVTSGEEAKLKKRKPRVKKENKAPRLKDEHGLELSSPRHSDNPSEEG-EVKDDGLEKSPT 1395
Query: 1109 EKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTC-SV 1167
+K ++ N+ N +E PVSS + E++K + V D S K+ S
Sbjct: 1396 KKKQKKKENKEN-----KEKPVSSRKDREGDK-EKKKSKDKKEKVKGGDAKSSSKSKRSQ 1449
Query: 1168 TPAMETAPGFDIPI 1181
P TA +PI
Sbjct: 1450 GPVHITAGSEPVPI 1463
Score = 59 (25.8 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
Identities = 27/118 (22%), Positives = 49/118 (41%)
Query: 2103 PLSSSDVEEEKIEGFSKPVGS------EKESIASAVPLDESKGPDAEVSSQTAIEGG--- 2153
P ++E E KPV S +KE S ++ KG DA+ SS++ G
Sbjct: 1394 PTKKKQKKKENKENKEKPVSSRKDREGDKEKKKSKDKKEKVKGGDAKSSSKSKRSQGPVH 1453
Query: 2154 ---GVVSIPVPEEADGPASFLAAEEEKNECSDK-EPVGSSVSQIESKEPEAKAFEPMD 2207
G +P+ E+ D +E + C ++ PV ++ Q++ + E ++
Sbjct: 1454 ITAGSEPVPIGEDEDDDLD----QETFSICKERMRPVKKALKQLDKPDKGLNVQEQLE 1507
Score = 54 (24.1 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 45/185 (24%), Positives = 74/185 (40%)
Query: 1581 ALLSSSKDIIAESAKADVVLDEHGKVQLLPG-ADNP-EGGVIVPEHKSENMGEKDDISSE 1638
A L K + + KA + DEHG P +DNP E G + + ++ +K E
Sbjct: 1344 AKLKKRKPRVKKENKAPRLKDEHGLELSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKE 1403
Query: 1639 HAFGSSLVL---QDKASEAEIGDRIDEPQ-VDGFSPRSMSGVVDELVDEAGDHMGVSHSP 1694
+ + +D+ + E D+ + V G +S S + H+ P
Sbjct: 1404 NKENKEKPVSSRKDREGDKEKKKSKDKKEKVKGGDAKSSS---KSKRSQGPVHITAGSEP 1460
Query: 1695 VHVVEREKSEELGLPSLSSATKE----EKIDGSLDKDPDSNLVV---LEDSKG---SIGD 1744
V + E E ++L + S + +K LDK PD L V LE ++ IGD
Sbjct: 1461 VPIGEDE-DDDLDQETFSICKERMRPVKKALKQLDK-PDKGLNVQEQLEHTRSCLLKIGD 1518
Query: 1745 QMDCC 1749
++ C
Sbjct: 1519 RIAEC 1523
Score = 51 (23.0 bits), Expect = 1.3e-34, Sum P(4) = 1.3e-34
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 647 QTKGQSRKTQSGGVTPR--RRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRL---S 701
Q K ++++ + V+ R R G ++ S + G ++KS+ +S+ + G + + S
Sbjct: 1399 QKKKENKENKEKPVSSRKDREGDKEKKKSKDKKEKVKGGDAKSSSKSKRSQGPVHITAGS 1458
Query: 702 KSVSMGKQ--DALSQE 715
+ V +G+ D L QE
Sbjct: 1459 EPVPIGEDEDDDLDQE 1474
Score = 47 (21.6 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 326 GVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSP----KLKEEG 381
G+++KG + + R R ++ E E + SD+P ++K++G
Sbjct: 1331 GLEKKGTVTSGEEAKLKKRKPRVKKENKAPRLKDEHGLE-LSSPRHSDNPSEEGEVKDDG 1389
Query: 382 LEKSLPT 388
LEKS PT
Sbjct: 1390 LEKS-PT 1395
Score = 47 (21.6 bits), Expect = 4.9e-35, Sum P(4) = 4.9e-35
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1815 PEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P H D P+ E K +G EK P +++ KE+
Sbjct: 1373 PRHSDNPSEEG--EVKDDGLEKSPTKKKQKKKENKEN 1407
Score = 47 (21.6 bits), Expect = 4.9e-35, Sum P(4) = 4.9e-35
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ ++E + D + V E E+ +EL
Sbjct: 1013 ENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELE 1072
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1073 EIYMLPRIRSSTKKAQTNDS-DSDTES 1098
Score = 45 (20.9 bits), Expect = 4.9e-35, Sum P(4) = 4.9e-35
Identities = 18/77 (23%), Positives = 43/77 (55%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENT-SEGMGGP------S 2226
++++N+ + ++PV S + KE + K+ + + V G A ++ S+ GP S
Sbjct: 1400 KKKENKENKEKPVSSRKDREGDKEKK-KSKDKKEKVKGGDAKSSSKSKRSQGPVHITAGS 1458
Query: 2227 PPLVIAEDKTENEIEED 2243
P+ I ED+ +++++++
Sbjct: 1459 EPVPIGEDE-DDDLDQE 1474
Score = 40 (19.1 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 1761 DFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKE 1796
D + S + + K + +++ PVSS+ EG KE
Sbjct: 1388 DGLEKSPTKKKQKKKENKENKEKPVSSRKDREGDKE 1423
Score = 40 (19.1 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 893 VKRHG-RKTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLR 951
VK G K+PT + ++ K+ P D + + K + G S +
Sbjct: 1385 VKDDGLEKSPTKKKQKKKENKENKEKPVSSRKDREGDKEKKKSKDKKEKVKGGDAKSSSK 1444
Query: 952 SKQETADVNDVA 963
SK+ V+ A
Sbjct: 1445 SKRSQGPVHITA 1456
Score = 37 (18.1 bits), Expect = 1.3e-34, Sum P(4) = 1.3e-34
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 890 SVPVKR--HGRKTPTTGEAPRRRGKKQGSGP 918
S P ++ H K+P +P R +Q + P
Sbjct: 1795 SPPAQKSPHDSKSPLDHRSPLERSLEQKNNP 1825
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 472 (171.2 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 101/213 (47%), Positives = 137/213 (64%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HY 51
+E+N + G++ + N++MELR CNHPYL + E++ DT P +
Sbjct: 1114 LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFH 1173
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG
Sbjct: 1174 LQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVR 1233
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 1234 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1293
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 204
RIGQ + V V R T + E ++ A KLG+
Sbjct: 1294 RIGQNKAVKVYRLVTRNSYEREMFDRASLKLGL 1326
Score = 58 (25.5 bits), Expect = 1.8e-36, Sum P(5) = 1.8e-36
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPR 1671
D +G V PE+K KDDI + + LV+ D + GD++ P + R
Sbjct: 1726 DYMDGDVEDPEYKPAPAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKVYWPTQSALTTR 1784
Score = 56 (24.8 bits), Expect = 1.8e-36, Sum P(5) = 1.8e-36
Identities = 43/176 (24%), Positives = 74/176 (42%)
Query: 1679 ELVDEAGDHMGVSHSPVHVV----------EREKSEELGLPSLSSATKEEKIDGSLDKDP 1728
+L+ A H GVS + H++ +R S+ S +S ++ +L P
Sbjct: 1969 DLLIGAAKH-GVSRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASP 2027
Query: 1729 DSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSS--EKDPVS 1786
++L L D+KG I ++M V ENL + +P SS + ++ + + +PVS
Sbjct: 2028 LTSLPRLLDAKGIILEEMK------VKSENLKE--EPQSSEEESMSSVETRTLIKSEPVS 2079
Query: 1787 SQS-VLEGSKETVAEAGD-QMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDS 1840
++ VL + G + D ++ + PAS P GSE DS
Sbjct: 2080 PKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPNPAS-KKPRVHKRGSESSSDS 2134
Score = 55 (24.4 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 40/158 (25%), Positives = 65/158 (41%)
Query: 1109 EKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVT 1168
E + R ++ G E VSS S+ A NT++ N L+ + +
Sbjct: 2749 ESEGKTERTESQSSENGGENSVSSSPSTSSTA-----ALNTAAAANPLALNPLLLSNILY 2803
Query: 1169 PAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEK 1228
P M PG ++ I + QS T D V+ KN+ L G + +EV K E+ D +K
Sbjct: 2804 PGMLLTPGLNLHIPT-LSQSNT-FD--VQNKNSDL-GSS--KSVEV-KEEDSRIKDQEDK 2855
Query: 1229 LEDTVDDHSLVKELIHRSPDHSDMVIGN-VPGNTSEDS 1265
+ L + + +D G+ ++SEDS
Sbjct: 2856 --GGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDS 2891
Score = 55 (24.4 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 27/139 (19%), Positives = 53/139 (38%)
Query: 518 STPMQPKGRGRRIQSGEQVPRRRGK-KIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
S P+ PK +G+Q + GK + + AA + +P P K +P+
Sbjct: 2075 SEPVSPKNGVLPQATGDQ--KSGGKCETDRRMVAARTEPLTPNPASK---KPRVHKRGSE 2129
Query: 577 GGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXX 636
+ +D SS + S S S +SG+ SS+ + S +++ ++
Sbjct: 2130 SSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSS 2189
Query: 637 XXXXXXXXXMQTKGQSRKT 655
+ + Q R++
Sbjct: 2190 SSSSEESDSDEEEAQKRES 2208
Score = 54 (24.1 bits), Expect = 2.9e-36, Sum P(5) = 2.9e-36
Identities = 31/129 (24%), Positives = 48/129 (37%)
Query: 1721 DGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSS 1780
+ S D D DS S C S + S C +SS + S+
Sbjct: 2129 ESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSS------SSST 2182
Query: 1781 EKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEK---- 1836
SS S E S EA + + M E + ASL+T +++T+ S +
Sbjct: 2183 SSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESV---ASLSTTQDETQDSFQMNNG 2239
Query: 1837 DPDSSFAAQ 1845
P+S++ Q
Sbjct: 2240 TPESAYILQ 2248
Score = 53 (23.7 bits), Expect = 5.8e-37, Sum P(3) = 5.8e-37
Identities = 41/198 (20%), Positives = 69/198 (34%)
Query: 531 QSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGN-VSS 589
QSG +P ++I L P +++ G PK+ + + + +T+ GN + +
Sbjct: 2605 QSGF-LPESMYERI-LTGPVVREEVSRRGRRPKSGIAKATAAA--AAASATSVSGNPLLA 2660
Query: 590 IPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTK 649
P D + A++ + A L + T L +
Sbjct: 2661 NGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMG-MPTGLPSGGEAKNMAAMFPMLLSGMA 2719
Query: 650 GQSRKTQSGGVT--PRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMG 707
G GG+ P G GS S S G ++ QS N G +S S S
Sbjct: 2720 GLPNLLGMGGLLTKPTESGTEDKKGSD--SKESEGKTERTESQSSENGGENSVSSSPSTS 2777
Query: 708 KQDALSQELS-NKIQVQP 724
AL+ + N + + P
Sbjct: 2778 STAALNTAAAANPLALNP 2795
Score = 53 (23.7 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 21/83 (25%), Positives = 32/83 (38%)
Query: 1262 SEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDV 1321
SE SS ++ S S S + HSR SGS +S + CS+ S +
Sbjct: 2128 SESSSDSDSDSE--RSSCSSRSSSSSSSSSCSHSR-----SGSSSSSSSSCSSASSSSSS 2180
Query: 1322 GNHPQNVEPTSASPERSGPQNSA 1344
+ +S+S E + A
Sbjct: 2181 STSSSSSSSSSSSEESDSDEEEA 2203
Score = 52 (23.4 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 29/137 (21%), Positives = 47/137 (34%)
Query: 900 TPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADV 959
TP + + R K+GS S S D++ + S S S S RS ++
Sbjct: 2113 TPNPA-SKKPRVHKRGSESSSDSDS---DSERSSCSSRSSSSSSSSSCSHSRSGSSSSSS 2168
Query: 960 NDVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVT 1019
+ + S T SS + + SS E D + K ++ S++
Sbjct: 2169 SSCSSASSSSSSSTSSSSSSSSSSS--EESDSDEEEAQKRESTTHM--KAYDEESVASLS 2224
Query: 1020 PTVETPPPGFNSPNENP 1036
T + F N P
Sbjct: 2225 TTQDETQDSFQMNNGTP 2241
Score = 52 (23.4 bits), Expect = 6.5e-37, Sum P(4) = 6.5e-37
Identities = 32/153 (20%), Positives = 60/153 (39%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQD 710
QS+ S TP + + AL + P++ + ++K + E L + +++
Sbjct: 2003 QSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDAKGIILEEMKVKSENLKEEPQSSEEE 2062
Query: 711 ALSQ-ELSNKIQVQPCGVATSA-DVAGPDQKPA---EQSVRVVQSN-QPINL-PATHDSS 763
++S E I+ +P A DQK E R+V + +P+ PA+
Sbjct: 2063 SMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPNPASKKPR 2122
Query: 764 SQPSGSTPAQVPSMDLGNVASDTKEVLSENSSS 796
GS + D + ++ S +SSS
Sbjct: 2123 VHKRGSESSSDSDSDSERSSCSSRSSSSSSSSS 2155
Score = 49 (22.3 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 37/157 (23%), Positives = 67/157 (42%)
Query: 1216 KPEN-KTDGDSVEKLE-DTVDDHSLVK-ELIHRSPDHSDMVIGNVPGNTSEDSSKMPLET 1272
K EN K + S E+ +V+ +L+K E + SP + V+ G+ + K +
Sbjct: 2048 KSENLKEEPQSSEEESMSSVETRTLIKSEPV--SPKNG--VLPQATGD-QKSGGKCETDR 2102
Query: 1273 PLIMKSTEG--PSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEP 1330
++ TE P+ + K V H R + S S +S +E S+ S ++ +
Sbjct: 2103 RMVAARTEPLTPNPASKKPRV--HKRGSE--SSSDSDSDSERSSCSSRSSSSS-----SS 2153
Query: 1331 TSASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDA 1367
+S S RSG +S+ C + S + + S +
Sbjct: 2154 SSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSS 2190
Score = 48 (22.0 bits), Expect = 1.7e-36, Sum P(4) = 1.7e-36
Identities = 31/157 (19%), Positives = 65/157 (41%)
Query: 668 RQALGSPPISDVSAG-PESKSNLQSENNSGGLRLSKSVSMGKQDALSQE-LSNKIQVQPC 725
R + S P+S + P++ + +S G + + + + L+ S K +V
Sbjct: 2070 RTLIKSEPVSPKNGVLPQATGDQKS---GGKCETDRRMVAARTEPLTPNPASKKPRVHKR 2126
Query: 726 GVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASD 785
G +S+D + D + + S R S+ + + SS S S+ + S + +S
Sbjct: 2127 GSESSSD-SDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSS 2185
Query: 786 TKEVLS---ENSSSKGGVIPILALSNMKAVERVNIQS 819
+ S E+ S + + ++MKA + ++ S
Sbjct: 2186 SSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVAS 2222
Score = 47 (21.6 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 35/163 (21%), Positives = 59/163 (36%)
Query: 546 LVLPAASDDIPSPGPDPKTNE----QPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSP 601
L P S G D K +E + +S+S G S ++ + SS + +P
Sbjct: 2731 LTKPTESGTEDKKGSDSKESEGKTERTESQSSENGGENSVSSSPSTSSTAALNTAAAANP 2790
Query: 602 SAVKGQ--SGTIDPSSAVA-ALNSELNT--NLATAXXXXXXXXXXXXXXMQTKGQ-SR-K 654
A+ S + P + LN + T T ++ K + SR K
Sbjct: 2791 LALNPLLLSNILYPGMLLTPGLNLHIPTLSQSNTFDVQNKNSDLGSSKSVEVKEEDSRIK 2850
Query: 655 TQS--GGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNS 695
Q GG P + +D S+G +S S+ +++S
Sbjct: 2851 DQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDS 2893
Score = 46 (21.3 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 685 SKSN-LQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPA 741
S+SN +N + L SKSV + ++D+ ++ +K +P + ++ G ++ A
Sbjct: 2820 SQSNTFDVQNKNSDLGSSKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADA 2877
Score = 45 (20.9 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 705 SMGKQDALSQ--ELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPI 754
++G+Q L++ EL + + S V+G +P + V+ NQPI
Sbjct: 2376 ALGQQQYLTRLRELQSASETSLVNFPKSIPVSGTSIQPTLGANGVILDNQPI 2427
Score = 45 (20.9 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1778 GSSEKDPVSSQSVLEGSKETVAEAG 1802
G +E P++ S EGS++ A +G
Sbjct: 2856 GGTEPSPLNENSTDEGSEKADASSG 2880
Score = 44 (20.5 bits), Expect = 9.8e-38, Sum P(4) = 9.8e-38
Identities = 35/150 (23%), Positives = 58/150 (38%)
Query: 719 KIQVQPCGVATSADVAGPDQKPAEQS----VRVVQSNQPINLPATHDSSSQPSGSTPAQV 774
K+ Q G+A G D +Q +R +QS +L + S P T Q
Sbjct: 2356 KLTFQKQGLAQKRPFDGEDGALGQQQYLTRLRELQSASETSL--VNFPKSIPVSGTSIQ- 2412
Query: 775 PSMDLGNVASDTKEVLSENSSSKGGV--IPILALSNMKAVERVNIQSFEEKACTNASKSK 832
P++ V D + ++ + + V + I + K V++ T++ S
Sbjct: 2413 PTLGANGVILDNQPIVKKRRGRRKNVEGVDIFFFNRNKPPNHVSL------GLTSSQIST 2466
Query: 833 ATLPALDSITEPYTGSTNTEGISNTIHHVP 862
PAL S T+P +GI +T VP
Sbjct: 2467 GINPAL-SYTQP-------QGIPDTESPVP 2488
Score = 44 (20.5 bits), Expect = 4.4e-36, Sum P(4) = 4.4e-36
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 1009 QSSDDKTCSVTPTVETPPPGFNSP-NENPGELTGTKNDASVRGDHTPVSGHTLASKTEAL 1067
QSS++++ S +VET + P + G L D G +A++TE L
Sbjct: 2057 QSSEEESMS---SVETRTLIKSEPVSPKNGVLPQATGDQK-SGGKCETDRRMVAARTEPL 2112
Query: 1068 KPENKAQAGRIENIANSSPDD 1088
P ++ R+ + S D
Sbjct: 2113 TPNPASKKPRVHKRGSESSSD 2133
Score = 44 (20.5 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 38/192 (19%), Positives = 62/192 (32%)
Query: 1618 GVIVPEHK--SENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDE-PQVDGFSPRSMS 1674
G+I+ E K SEN+ E+ S E + SS+ + + + PQ G
Sbjct: 2039 GIILEEMKVKSENLKEEPQSSEEESM-SSVETRTLIKSEPVSPKNGVLPQATGDQKSGGK 2097
Query: 1675 GVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV 1734
D + A ++ +P R S S + E S S+
Sbjct: 2098 CETDRRMVAARTEP-LTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSC 2156
Query: 1735 LEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGS 1794
GS C S + + SSS + E+ D + S+ +
Sbjct: 2157 SHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYD 2216
Query: 1795 KETVAEAGDQMD 1806
+E+VA D
Sbjct: 2217 EESVASLSTTQD 2228
Score = 40 (19.1 bits), Expect = 5.8e-37, Sum P(3) = 5.8e-37
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 2166 GPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE 2220
G + + +EE + D+E G + ++ + E D G+ + ++SE
Sbjct: 2835 GSSKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSE 2889
Score = 40 (19.1 bits), Expect = 2.7e-36, Sum P(4) = 2.7e-36
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 1031 SP-NENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
SP NEN + K DAS D T S S E
Sbjct: 2861 SPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNE 2896
Score = 40 (19.1 bits), Expect = 8.9e-36, Sum P(4) = 8.9e-36
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 732 DVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGN 781
D G D K +E +S N + SS PS S+ A + + N
Sbjct: 2741 DKKGSDSKESEGKTERTESQSSEN-GGENSVSSSPSTSSTAALNTAAAAN 2789
Score = 39 (18.8 bits), Expect = 6.5e-37, Sum P(4) = 6.5e-37
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 1010 SSDDKTCSVTPTVE-TPPPGFNSPNENPGELTGTKNDASVRGDHTP 1054
+S + + P + T P G E+P + K+ + GD P
Sbjct: 2460 TSSQISTGINPALSYTQPQGIPD-TESPVPVINLKDGTRLAGDDAP 2504
Score = 38 (18.4 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 561 DPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTID 612
D + +Q PS +TD + DS S S+ S D
Sbjct: 2846 DSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNED 2897
Score = 38 (18.4 bits), Expect = 1.8e-36, Sum P(5) = 1.8e-36
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 1584 SSSKDIIAESAKADVVLDEHGKVQ 1607
S++KD +AE ++A+ DE K++
Sbjct: 1458 SATKDELAELSEAESEGDEKPKLR 1481
Score = 38 (18.4 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 1505 EIATSCDTASLDDSHD-NGNVEVLCGGTGDKKADCKMEPD 1543
E +S +T +L S + VL TGD+K+ K E D
Sbjct: 2062 ESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETD 2101
Score = 37 (18.1 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKS 385
K E E T+E EK + SDS E + S
Sbjct: 2855 KGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSS 2894
Score = 37 (18.1 bits), Expect = 3.7e-36, Sum P(5) = 3.7e-36
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESKGSEA 2259
T + G S ++TE++ E+ NSV+ S S A
Sbjct: 2739 TEDKKGSDSKESEGKTERTESQSSENGGENSVSSSPSTSSTA 2780
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 481 (174.4 bits), Expect = 2.2e-38, Sum P(4) = 2.2e-38
Identities = 110/246 (44%), Positives = 153/246 (62%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HY 51
+E+N + G++ + N++MELR CNHPYL + E++ DT P +
Sbjct: 1113 LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPSASDFH 1172
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG
Sbjct: 1173 LQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVR 1232
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 1233 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1292
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDR--REY 226
RIGQ + V V R T + E ++ A KLG+ QS++ D+N S + ++
Sbjct: 1293 RIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR--DSNVSGIQQLSKKE 1350
Query: 227 LESLLR 232
+E LLR
Sbjct: 1351 IEDLLR 1356
Score = 59 (25.8 bits), Expect = 2.2e-38, Sum P(4) = 2.2e-38
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPR 1671
D +G V PE+K KDDI + + LV+ D + GD++ P + R
Sbjct: 1725 DYMDGDVEDPEYKPAPAIFKDDIEDDVSSPGDLVIADGEGQLMEGDKVYWPTPSALTTR 1783
Score = 55 (24.4 bits), Expect = 9.9e-38, Sum P(5) = 9.9e-38
Identities = 39/172 (22%), Positives = 69/172 (40%)
Query: 1679 ELVDEAGDHMGVSHSPVHVV----------EREKSEELGLPSLSSATKEEKIDGSLDKDP 1728
+L+ A H GVS + H++ +R ++ S +SA ++ +L P
Sbjct: 1968 DLLIGAAKH-GVSRTDYHILRDPELSFMAAQRNYNQSKAAHSRTSAPLLQQYQVALSASP 2026
Query: 1729 DSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQ 1788
++L L +KG++ + M + S+ SS K + S K+ V SQ
Sbjct: 2027 LTSLPRLLGAKGTLLEDMKVKSESLTEEPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQ 2086
Query: 1789 SVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDS 1840
+ + +E +M ++ E L + PAS P GS+ DS
Sbjct: 2087 ATGDQKSGGKSETDRRM-VAARTEPLTPN---PAS-KKPRVHKRGSQSSSDS 2133
Score = 52 (23.4 bits), Expect = 3.0e-37, Sum P(4) = 3.0e-37
Identities = 23/114 (20%), Positives = 51/114 (44%)
Query: 518 STPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSG 577
S P+ PK +G+Q + + ++ A ++ + +P P K + S + S
Sbjct: 2074 SEPVSPKNGVLSQATGDQKSGGKSETDRRMVAARTEPL-TPNPASKKPRVHKRGSQSSSD 2132
Query: 578 GESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATA 631
+S + + SS ++ S S S + S + SS +A +S +++ +++
Sbjct: 2133 SDSDSARSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSS 2186
Score = 50 (22.7 bits), Expect = 2.2e-38, Sum P(4) = 2.2e-38
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 1766 SSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLA 1825
SSS + + SS SS S S+E+ +E Q K + + ASL+
Sbjct: 2165 SSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEDVQKREGTPHRKAYDEESV-ASLS 2223
Query: 1826 TPEEKTEGSEK----DPDSSFAAQ 1845
T +++T+ S + P+S++ Q
Sbjct: 2224 TTQDETQDSFQANNGTPESAYLLQ 2247
Score = 49 (22.3 bits), Expect = 5.7e-35, Sum P(5) = 5.7e-35
Identities = 32/167 (19%), Positives = 68/167 (40%)
Query: 1186 EQSGTEIDAKVKWKNTPL-PGEAIVA---GIEVFKPENKTDGDSVE-KLEDTVDDHSLVK 1240
E+S + ++ + + K+ P+ P +++ G + +++TD V + E + + K
Sbjct: 2060 EESMSSMETRTRVKSEPVSPKNGVLSQATGDQKSGGKSETDRRMVAARTEPLTPNPASKK 2119
Query: 1241 ELIHR--SPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRET 1298
+H+ S SD + + S SS + S G S S + + S
Sbjct: 2120 PRVHKRGSQSSSDSDSDSARSSCSSRSSSSSSSSSSCSHSRSGSS-SSSSSSCSSAS--- 2175
Query: 1299 PILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAV 1345
S S +S + S+ S ++ + ++V+ +P R +V
Sbjct: 2176 ---SSSSSSSSSSSSSSSSSSEESDSEEDVQKREGTPHRKAYDEESV 2219
Score = 47 (21.6 bits), Expect = 5.1e-36, Sum P(4) = 5.1e-36
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 1009 QSSDDKTCSVTPT---VETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
QSS++++ S T V++ P SP G L+ D G + +A++TE
Sbjct: 2056 QSSEEESMSSMETRTRVKSEPV---SPKN--GVLSQATGDQK-SGGKSETDRRMVAARTE 2109
Query: 1066 ALKPENKAQAGRIENIANSSPDD 1088
L P ++ R+ + S D
Sbjct: 2110 PLTPNPASKKPRVHKRGSQSSSD 2132
Score = 47 (21.6 bits), Expect = 5.9e-34, Sum P(6) = 5.9e-34
Identities = 21/115 (18%), Positives = 42/115 (36%)
Query: 932 NQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMK---EIFSETCSSKAKTGDSSLNEG 988
+Q S + DS S + S RS ++ + + S +CSS + + SS +
Sbjct: 2127 SQSSSDSDSDSARS-SCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSS 2185
Query: 989 KDXXXXXXXXXXXXXEVAKKQSS-------DDKTCSVTPTVETPPPGFNSPNENP 1036
+V K++ + ++ S++ T + F + N P
Sbjct: 2186 SSSSSSSSEESDSEEDVQKREGTPHRKAYDEESVASLSTTQDETQDSFQANNGTP 2240
Score = 47 (21.6 bits), Expect = 5.9e-34, Sum P(6) = 5.9e-34
Identities = 33/156 (21%), Positives = 62/156 (39%)
Query: 668 RQALGSPPISDVSAGPESKSNLQSENNSGGL-RLSKSVSMGKQDALSQE-LSNKIQVQPC 725
R + S P+S + G S++ + SGG + + + + L+ S K +V
Sbjct: 2069 RTRVKSEPVSPKN-GVLSQAT--GDQKSGGKSETDRRMVAARTEPLTPNPASKKPRVHKR 2125
Query: 726 GVATSADVAGPDQKPA--EQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVA 783
G +S+D + + +S S+ + + SSS S + A S + +
Sbjct: 2126 GSQSSSDSDSDSARSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSS 2185
Query: 784 SDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQS 819
S + SE S S+ V + KA + ++ S
Sbjct: 2186 SSSSSSSSEESDSEEDVQKREGTPHRKAYDEESVAS 2221
Score = 47 (21.6 bits), Expect = 5.9e-34, Sum P(6) = 5.9e-34
Identities = 36/160 (22%), Positives = 54/160 (33%)
Query: 566 EQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSA--VAALNSE 623
E+PQS T T V S P +P +S + +SG + VAA
Sbjct: 2053 EEPQSSEEESMSSMETRT--RVKSEPVSPKNGVLSQATGDQKSGGKSETDRRMVAARTEP 2110
Query: 624 LNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGP 683
L N A+ Q+ S + S + R + S S +G
Sbjct: 2111 LTPNPASKKPRVHKRGS------QSSSDS-DSDSARSSCSSRSSSSSSSSSSCSHSRSGS 2163
Query: 684 ESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQ 723
S S+ + S S S S + S+E ++ VQ
Sbjct: 2164 SSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEDVQ 2203
Score = 46 (21.3 bits), Expect = 3.0e-37, Sum P(4) = 3.0e-37
Identities = 34/146 (23%), Positives = 61/146 (41%)
Query: 647 QTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSA-------GPESKSNLQSENNS-GGL 698
+ +G+ +T+S +P G+R GSP S +A P + + L N G+
Sbjct: 2738 ELEGKKERTESQ--SPENGGERCVPGSPSTSSTAALSSAAAAKPIALNPLLLSNILYPGM 2795
Query: 699 RLSKSVSMGKQDALSQELSNKIQVQP-----CGVATSADVAGPDQKPAEQSVRVVQSNQP 753
L+ +++ LSQ SN VQ + S ++ + + +Q + P
Sbjct: 2796 LLTPGLNL-HLPTLSQ--SNAFDVQKNKSDDLDSSKSVEIKEENSRVRDQEEKGGTEPSP 2852
Query: 754 INLPATHDSSSQPS-GSTPAQVPSMD 778
+N +T + S + S GS + S D
Sbjct: 2853 LNENSTDEGSERASSGSDSSSSSSED 2878
Score = 42 (19.8 bits), Expect = 2.2e-38, Sum P(4) = 2.2e-38
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R RE+ S ++ Q E + E +C+A
Sbjct: 1504 YGWG-RWREILSHGRFKRQLNEHDVEVICRA 1533
Score = 41 (19.5 bits), Expect = 2.4e-33, Sum P(6) = 2.4e-33
Identities = 28/152 (18%), Positives = 55/152 (36%)
Query: 458 EKDAMTGQSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQPT--TAFVPVAPGSQSASA 515
+ D+ + +S+ +S S H G + SS + +A + S S+S+
Sbjct: 2132 DSDSDSARSSCSSRS----SSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSS 2187
Query: 516 CPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNP 575
S+ + +Q E P R+ V ++ + N P+S L
Sbjct: 2188 SSSSSSEESDSEEDVQKREGTPHRKAYDEESVASLSTTQDETQDSFQANNGTPESAYLLQ 2247
Query: 576 SGGESTATDGNVSSIPTAPVPDSVSPSAVKGQ 607
G A+ + + DS+ + +KG+
Sbjct: 2248 GGYMLAASYWPKDRVMINRL-DSICQTVLKGK 2278
Score = 40 (19.1 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 1018 VTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTP 1054
+ P + P P E+P + K+ + GD P
Sbjct: 2458 MNPALSYPQPQRIPDTESPVPVINLKDGTRLAGDDAP 2494
Score = 40 (19.1 bits), Expect = 5.7e-35, Sum P(5) = 5.7e-35
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 1756 PENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVL 1791
PEN + C P S A + ++ P++ +L
Sbjct: 2751 PENGGERCVPGSPSTSSTAALSSAAAAKPIALNPLL 2786
Score = 40 (19.1 bits), Expect = 1.8e-34, Sum P(6) = 1.8e-34
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 1323 NHPQNVEPTSASPERSGPQ 1341
N P N PT +P S PQ
Sbjct: 2448 NKPPNHIPTGMNPALSYPQ 2466
Score = 39 (18.8 bits), Expect = 9.9e-38, Sum P(5) = 9.9e-38
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 2064 SASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGS 2123
S S G S + ++ + + + S S+ + +K EG
Sbjct: 2155 SCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEDVQKREGTPHRKAY 2214
Query: 2124 EKESIAS-AVPLDESK 2138
++ES+AS + DE++
Sbjct: 2215 DEESVASLSTTQDETQ 2230
Score = 39 (18.8 bits), Expect = 1.6e-36, Sum P(4) = 1.6e-36
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 704 VSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSS 763
V K D L S +I+ + V + G + P ++ S + + + SS
Sbjct: 2816 VQKNKSDDLDSSKSVEIKEENSRVRDQEEKGGTEPSPLNENSTDEGSERASSGSDSSSSS 2875
Query: 764 SQPSGST 770
S+ S S+
Sbjct: 2876 SEDSDSS 2882
Score = 39 (18.8 bits), Expect = 7.5e-34, Sum P(5) = 7.5e-34
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 1526 VLCGGTGDKKADCKMEPD 1543
VL TGD+K+ K E D
Sbjct: 2083 VLSQATGDQKSGGKSETD 2100
Score = 38 (18.4 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1778 GSSEKDPVSSQSVLEGSKETVAEAGDQMDIS 1808
G +E P++ S EGS E + D S
Sbjct: 2846 GGTEPSPLNENSTDEGS-ERASSGSDSSSSS 2875
Score = 37 (18.1 bits), Expect = 1.7e-35, Sum P(5) = 1.7e-35
Identities = 30/112 (26%), Positives = 44/112 (39%)
Query: 1234 DDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDV-A 1292
DD ++ E R+ D+ D G+V ED P P I K VS D V A
Sbjct: 1713 DDKAVAAE--QRANDYMD---GDV-----EDPEYKP--APAIFKDDIEDDVSSPGDLVIA 1760
Query: 1293 DHSRETPILSGSPINSGTECS---------TVSVKTDVGNHPQNVEPTSASP 1335
D E ++ G + T + T +T+ H Q ++PT + P
Sbjct: 1761 DG--EGQLMEGDKVYWPTPSALTTRLRRLITAYQRTNKNRHIQQMQPTFSLP 1810
Score = 37 (18.1 bits), Expect = 5.7e-35, Sum P(5) = 5.7e-35
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1821 PASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P + + +E +E + DSS ++ ED S
Sbjct: 2852 PLNENSTDEGSERASSGSDSSSSSSEDSDSS 2882
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 470 (170.5 bits), Expect = 4.3e-38, Sum P(5) = 4.3e-38
Identities = 107/245 (43%), Positives = 149/245 (60%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHY 51
+E+N + G++ + N++MELR CNHPYL E++ +T P
Sbjct: 1223 LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQ 1282
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 1283 LQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVR 1342
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 1343 GNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1402
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLE 228
RIGQ + V + R T + E ++ A KLG+ QS++ N + ++ +E
Sbjct: 1403 RIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1462
Query: 229 SLLRE 233
LLR+
Sbjct: 1463 DLLRK 1467
Score = 66 (28.3 bits), Expect = 4.3e-38, Sum P(5) = 4.3e-38
Identities = 35/178 (19%), Positives = 68/178 (38%)
Query: 918 PSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKEIFSETCSSK 977
P I + V + K + +++K GS+ + + K + + D+A K+ + C ++
Sbjct: 2157 PPIVPSTPVQEEKSTEQTESKVE---GSENPAAKEKSDIKEETDIAD--KDT-KQDCDAE 2210
Query: 978 AKTGD-----SSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTC-SVTPTVETPPPGFNS 1031
A+TG + D + +K DDK+ S P G N
Sbjct: 2211 AETGSVKCELKDIEMSTDVDPKSISEKGSEEDEEEKLDDDDKSEESSQPEAGAVSQGKNF 2270
Query: 1032 PNENPGELTGTKN---DASVRGDHTPVSGHTLASKTEALK--PENKAQAGRIENIANS 1084
E+ ++ ++ D D P L +T A P+++ R++NI +
Sbjct: 2271 DEESNASMSTARDETRDGFYMEDGDPSVVQLLHERTFAFSFWPKDRVMINRLDNICEA 2328
Score = 57 (25.1 bits), Expect = 1.2e-36, Sum P(5) = 1.2e-36
Identities = 35/122 (28%), Positives = 53/122 (43%)
Query: 1626 SENMG--EKDDISSEHAFGSSLVLQDKASEAEIGD-RIDEPQVD---GFSPRSMSGVVDE 1679
SEN EK DI E QD +EAE G + + ++ P+S+S E
Sbjct: 2181 SENPAAKEKSDIKEETDIADKDTKQDCDAEAETGSVKCELKDIEMSTDVDPKSISEKGSE 2240
Query: 1680 LVDEA----GDHMGVSHSP-VHVVEREKS-EELGLPSLSSATKEEKIDGSLDKDPDSNLV 1733
+E D S P V + K+ +E S+S+A ++E DG +D D ++V
Sbjct: 2241 EDEEEKLDDDDKSEESSQPEAGAVSQGKNFDEESNASMSTA-RDETRDGFYMEDGDPSVV 2299
Query: 1734 VL 1735
L
Sbjct: 2300 QL 2301
Score = 56 (24.8 bits), Expect = 4.3e-38, Sum P(5) = 4.3e-38
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 1717 EEKIDGS-----LDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSD 1761
EE ++GS LDK DS+ +LED G+++D G + N +D
Sbjct: 2964 EENLEGSDAEESLDKTADSS--ILEDEIAQ-GEELDSLDGGEEIENNEND 3010
Score = 55 (24.4 bits), Expect = 1.9e-36, Sum P(5) = 1.9e-36
Identities = 28/109 (25%), Positives = 46/109 (42%)
Query: 1748 CCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSS-----EKDPVSSQSVLEGSKETV---- 1798
C Q+ +VP S Q S E+K++GS EK + ++ + K+T
Sbjct: 2153 CSQTPPIVP---STPVQEEKSTEQTESKVEGSENPAAKEKSDIKEETDI-ADKDTKQDCD 2208
Query: 1799 --AEAG----DQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSS 1841
AE G + DI + + P+ + S EEK + +K +SS
Sbjct: 2209 AEAETGSVKCELKDIEMSTDVDPKSISEKGSEEDEEEKLDDDDKSEESS 2257
Score = 54 (24.1 bits), Expect = 2.5e-35, Sum P(5) = 2.5e-35
Identities = 44/186 (23%), Positives = 68/186 (36%)
Query: 2028 RGDG---IVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNII 2084
RG G V P G +P +V + S + G S+ P A+ + I
Sbjct: 2135 RGTGNANTVSSLHPVGAGCSQTPPIVPSTPVQEEKSTEQTESKV-EG-SENPAAKEKSDI 2192
Query: 2085 DAEGGGNMRQTVPQDLGLPLSSSDVE-EEKIEGFSKPVGSEKESIASAVPLDESKGPDAE 2143
E + T QD + V+ E K S V + S + +E K D +
Sbjct: 2193 KEETDIADKDT-KQDCDAEAETGSVKCELKDIEMSTDVDPKSISEKGSEEDEEEKLDDDD 2251
Query: 2144 VSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAF 2203
S +++ G VS + + AS A +E + E SV Q+ + A +F
Sbjct: 2252 KSEESSQPEAGAVSQGKNFDEESNASMSTARDETRDGFYMEDGDPSVVQLLHERTFAFSF 2311
Query: 2204 EPMDVV 2209
P D V
Sbjct: 2312 WPKDRV 2317
Score = 53 (23.7 bits), Expect = 9.2e-37, Sum P(5) = 9.2e-37
Identities = 22/101 (21%), Positives = 46/101 (45%)
Query: 1098 ETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNL-A 1156
+T P P+++ E+S Q +V+G E P + E ++ E+ + + + + A
Sbjct: 2155 QTPPIVPSTPVQE--EKSTEQTESKVEGSENPAAKE---KSDIKEETDIADKDTKQDCDA 2209
Query: 1157 DLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVK 1197
+ + C + +E + D P K + + G+E D + K
Sbjct: 2210 EAETGSVKCELKD-IEMSTDVD-P--KSISEKGSEEDEEEK 2246
Score = 51 (23.0 bits), Expect = 1.4e-37, Sum P(5) = 1.4e-37
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 2162 EEADGPASFLAAEEEKN-ECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALEN 2217
E+A A ++E+N E SD E + E E E +D +DG +EN
Sbjct: 2950 EKATDKTEGTAFKDEENLEGSDAEESLDKTADSSILEDEIAQGEELDSLDGGEEIEN 3006
Score = 51 (23.0 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 518 STPMQPKGRGRRIQ-SGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
S P Q + R R+I+ E+ +RR + +V + S N Q + L+ +
Sbjct: 2397 SVPRQRRRRRRKIEIEAERAAKRRNL-MEMVAQLRESQVVSE------NGQEKVVDLSKA 2449
Query: 577 GGESTATDGNVSSIPTAPVPDSVS 600
E+T++ N SS+ + + +VS
Sbjct: 2450 SREATSSTSNFSSVTSKFILPNVS 2473
Score = 50 (22.7 bits), Expect = 1.8e-37, Sum P(5) = 1.8e-37
Identities = 19/77 (24%), Positives = 31/77 (40%)
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
A AG Q + EK + + + EE EGS+ + A E + G++
Sbjct: 2937 ALAGLQNAVGSNEEKATDKTE--GTAFKDEENLEGSDAEESLDKTADSSILEDEIAQGEE 2994
Query: 1859 MGVSLGGATVMEKSSED 1875
+ SL G +E + D
Sbjct: 2995 LD-SLDGGEEIENNEND 3010
Score = 48 (22.0 bits), Expect = 4.3e-38, Sum P(5) = 4.3e-38
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 1128 TPVSSEAPASTEAFEQEKVTNTSSFVNLADLS-SDDKTCSVTPAMETAPGFDIPIEKGVE 1186
TP + ++P +F + S + A +S S+D T S + E A +P ++
Sbjct: 2352 TPTAVDSPLQKRSFAE------LSMIGQASISGSEDITASPQLSKEDALNLSVPRQRRRR 2405
Query: 1187 QSGTEIDAK 1195
+ EI+A+
Sbjct: 2406 RRKIEIEAE 2414
Score = 48 (22.0 bits), Expect = 9.2e-37, Sum P(5) = 9.2e-37
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 1068 KPENKAQAGRIENIANSSPDDK--SLPMVPN 1096
KP I+ ANS P+DK S+ + PN
Sbjct: 1859 KPTRTPFKDEIDEFANSPPEDKEESIEIHPN 1889
Score = 48 (22.0 bits), Expect = 2.5e-35, Sum P(5) = 2.5e-35
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGP 2017
V + D+K AE +L GG E +E+E E + P +D+ + P
Sbjct: 1822 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSP 1876
Score = 45 (20.9 bits), Expect = 5.7e-37, Sum P(5) = 5.7e-37
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 1215 FKPENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSED 1264
FK E +G E+ D D S++++ I + + + G N D
Sbjct: 2961 FKDEENLEGSDAEESLDKTADSSILEDEIAQGEELDSLDGGEEIENNEND 3010
Score = 45 (20.9 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 659 GVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSN 718
G R G + G P S+++ + + + S + L L S+ G Q L N
Sbjct: 2708 GPVVREEGASRR-GRRPKSEIAKAAAAAAAVASTSGINPL-LMNSLFAGMDLTSLQNLQN 2765
Query: 719 KIQVQ-------PCGVATSADVAGPDQKPA 741
+Q P G+AT+A G + PA
Sbjct: 2766 LQSLQLAGLMGFPPGLATAAAAGGDAKNPA 2795
Score = 45 (20.9 bits), Expect = 8.6e-35, Sum P(6) = 8.6e-35
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 505 PVAPG-SQSASACPSTPMQPKGRGRRIQS---GEQVPRRRGK 542
PV G SQ+ PSTP+Q + + +S G + P + K
Sbjct: 2148 PVGAGCSQTPPIVPSTPVQEEKSTEQTESKVEGSENPAAKEK 2189
Score = 44 (20.5 bits), Expect = 7.6e-36, Sum P(5) = 7.6e-36
Identities = 23/102 (22%), Positives = 36/102 (35%)
Query: 647 QTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSM 706
Q +G + P G Q +PPI + E KS Q+E+ G +
Sbjct: 2133 QNRGTGNANTVSSLHPVGAGCSQ---TPPIVPSTPVQEEKSTEQTESKVEGSE--NPAAK 2187
Query: 707 GKQDALSQ-ELSNKIQVQPCGVATSADVAGPDQKPAEQSVRV 747
K D + ++++K Q C + K E S V
Sbjct: 2188 EKSDIKEETDIADKDTKQDCDAEAETGSVKCELKDIEMSTDV 2229
Score = 42 (19.8 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 13/67 (19%), Positives = 25/67 (37%)
Query: 1295 SRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCD-KSEI 1353
S+ PI+ +P+ K + +P E + E CD ++E
Sbjct: 2154 SQTPPIVPSTPVQEEKSTEQTESKVEGSENPAAKEKSDIKEETDIADKDTKQDCDAEAET 2213
Query: 1354 PSMEAEV 1360
S++ E+
Sbjct: 2214 GSVKCEL 2220
Score = 42 (19.8 bits), Expect = 2.5e-35, Sum P(5) = 2.5e-35
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 534 EQVP---RRRGKKIGLVLPAASDDIP 556
E+VP +R GKK+G + D+P
Sbjct: 2647 ERVPVVNKRNGKKMGGAMAPPMKDLP 2672
Score = 41 (19.5 bits), Expect = 4.3e-38, Sum P(5) = 4.3e-38
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQ 368
YG G R ++ S Y+ Q TE++ E +C+
Sbjct: 1617 YGWG-RWTDILSHGRYKRQLTEQDVETICR 1645
Score = 41 (19.5 bits), Expect = 1.5e-36, Sum P(5) = 1.5e-36
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRID 1661
D EG E EN+ D S S +L+D+ ++ E D +D
Sbjct: 2954 DKTEGTAFKDE---ENLEGSDAEESLDKTADSSILEDEIAQGEELDSLD 2999
Score = 41 (19.5 bits), Expect = 6.0e-36, Sum P(5) = 6.0e-36
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ ++ L GAD+ E V +PE
Sbjct: 1750 RQEVIGDQADRI--LEGADSSEVDVWIPE 1776
Score = 40 (19.1 bits), Expect = 8.6e-35, Sum P(6) = 8.6e-35
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 572 SLNPSGGEST-ATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNL 628
SL E T A + ++ ++P +P SP G +DP + + +N E T L
Sbjct: 2535 SLTVEDAEVTKAFEEDMEALPARNIP---SP-------GQLDPDTRIPVINLEDGTRL 2582
Score = 38 (18.4 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 1114 QSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
+S ++ P K S+ A +E F EK
Sbjct: 1581 ESDSEEKPSTKPRRPQDKSQGYARSECFRVEK 1612
Score = 37 (18.1 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 1113 EQSRNQNNPEVKGEETPVSSE 1133
E R +PE K TP E
Sbjct: 1848 EFDREDEDPEYKPTRTPFKDE 1868
Score = 37 (18.1 bits), Expect = 1.3e-34, Sum P(5) = 1.3e-34
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 1763 CQPSSSLAPW-EAKIDGSSEKD 1783
CQPS L W E G +KD
Sbjct: 2081 CQPSLDLPEWWEC---GKHDKD 2099
Score = 37 (18.1 bits), Expect = 1.3e-33, Sum P(5) = 1.3e-33
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 2244 PVVNSVAVEESKGSE 2258
P+V S V+E K +E
Sbjct: 2158 PIVPSTPVQEEKSTE 2172
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 448 (162.8 bits), Expect = 4.9e-38, P = 4.9e-38
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + + L ++R GKL +LD+L
Sbjct: 745 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGQEILLSLIRSSGKLILLDKL 801
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 802 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 861
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 862 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 921
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 922 TVEEEIIERAKKKM 935
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 461 (167.3 bits), Expect = 5.0e-38, Sum P(2) = 5.0e-38
Identities = 97/228 (42%), Positives = 143/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 901 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLML 960
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 961 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1020
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1021 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1080
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1081 VTRASVEERITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1126
Score = 59 (25.8 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 1776 IDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPAS--------LATP 1827
+DG +D S E ++E E ++ S PE+LP+ +P L+
Sbjct: 1527 LDGVEGEDKHESSDGKERAREERLEEAEKAQPS--PEQLPKEEVLPEKEKILDKLELSLI 1584
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
+ +GS+ PD + A +++P E+ + GD+
Sbjct: 1585 HSRGDGSDFRPDDTKAEEKEPIETQ-QNGDK 1614
Score = 52 (23.4 bits), Expect = 3.4e-35, Sum P(5) = 3.4e-35
Identities = 37/165 (22%), Positives = 68/165 (41%)
Query: 1010 SSDDKT-CSVTPTVETP-PPGFNSPNENPGELTGT-KNDASVRGDHTP-----VSGHTLA 1061
SSD T +P P PPG P++ +L + + V+ P + G
Sbjct: 1476 SSDPNTPVPASPAHLLPAPPGL--PDKLEAQLGYMDEKEPGVQKPKKPPEIQALDGVEGE 1533
Query: 1062 SKTEALKPENKAQAGRIENIANSSPDDKSLP---MVPNLETAPPGFDIPIEKHNEQSRNQ 1118
K E+ + +A+ R+E + P + LP ++P E ++ + H+ +
Sbjct: 1534 DKHESSDGKERAREERLEEAEKAQPSPEQLPKEEVLPEKEKILDKLELSLI-HSRGDGSD 1592
Query: 1119 NNPE-VKGEET-PVSSEAPASTEAFEQEKVTNTSS---FV-NLAD 1157
P+ K EE P+ ++ E E+ K + + F+ N+AD
Sbjct: 1593 FRPDDTKAEEKEPIETQQNGDKEEDEEGKKEDRNGKFKFMFNIAD 1637
Score = 51 (23.0 bits), Expect = 5.0e-38, Sum P(2) = 5.0e-38
Identities = 29/97 (29%), Positives = 40/97 (41%)
Query: 290 PLPPLPSRLV-TDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRA 348
P+P P+ L+ L EA Y K P V +K + ALD G+
Sbjct: 1482 PVPASPAHLLPAPPGLPDKLEAQLGYMDEK---EPGVQKPKKPPEIQALDGVE---GEDK 1535
Query: 349 REVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGL-EK 384
E +E+ EE E+ +A+ S KEE L EK
Sbjct: 1536 HESSDGKERAREERLEEAEKAQPSPEQLPKEEVLPEK 1572
Score = 45 (20.9 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS 598
N + + L P G E +SS P PVP S
Sbjct: 1453 NGKYSTPDLIPEGPEGKKPGEVISSDPNTPVPAS 1486
Score = 45 (20.9 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 263 ESVDKQRREEEMATWRKLIRGLGTDGE-PLPPLPSRLVTDDDLKALYEAMK---IYDAPK 318
E D + R E + R+ R L +D + PLPPL +R+ + ++ + + +
Sbjct: 1311 EDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMR 1370
Query: 319 TGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLK 378
G+ P H D RGK +E R+Y + E + + +
Sbjct: 1371 WGMPPQDAFN---SHWLVRDL----RGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVP 1423
Query: 379 EEGLEK 384
EGL +
Sbjct: 1424 REGLSR 1429
Score = 42 (19.8 bits), Expect = 6.6e-36, Sum P(5) = 6.6e-36
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 340 QHYGRGKRAREVRSY------EEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
++ G+GKR R+ +Y +++W +E + Q+E S + ++E E+
Sbjct: 1269 RNLGKGKRIRKQVNYNDASQEDQEWQDELSDN--QSEYSIGSEDEDEDFEE 1317
Score = 40 (19.1 bits), Expect = 3.0e-33, Sum P(5) = 3.0e-33
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSE-KDPDSSFAAQEDPKESV 1852
+S++ +K+ E + +TP+ EG E K P ++ DP V
Sbjct: 1439 MSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKPGEVISS--DPNTPV 1483
Score = 39 (18.8 bits), Expect = 3.0e-37, Sum P(3) = 3.0e-37
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 1175 PGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGE-AIVAGIEVFKPENKTDGDSVEKLEDTV 1233
P IP + + AK K +TP PG+ V V ++ +++ +D
Sbjct: 1147 PATPIPDVQSSKGGALAASAKKKHGSTP-PGDNKDVEDSSVIHYDDAAISKLLDRNQDAT 1205
Query: 1234 DDHSL 1238
DD L
Sbjct: 1206 DDTEL 1210
Score = 38 (18.4 bits), Expect = 9.1e-34, Sum P(5) = 9.1e-34
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDG 2031
E ++E EK + S E+ P + ++ K + + RGDG
Sbjct: 1548 ERLEEAEKAQPSPEQLPKEEVLPEKEKILDKLELSLIHSRGDG 1590
Score = 37 (18.1 bits), Expect = 6.6e-36, Sum P(5) = 6.6e-36
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 522 QPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDI 555
+P+G+ R QS Q+ R K + +L +I
Sbjct: 1318 RPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNI 1351
Score = 37 (18.1 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPM 2206
E +D + + E+++E ++ P G S + ++ ++ +P+
Sbjct: 1296 ELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDKPL 1340
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 475 (172.3 bits), Expect = 5.2e-38, Sum P(3) = 5.2e-38
Identities = 106/236 (44%), Positives = 146/236 (61%)
Query: 6 ENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLE 63
+N + KG ++ N + EL+ CNHPYL Q +E + L K L ++R GKL
Sbjct: 1010 KNFQELNKGKGEKTTLLNIMTELKKTCNHPYLYQNARDECE-LGAKDLLDSMIRASGKLV 1068
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LD+LL +LK T HRVL FS M R+LD++ DYL + +++ RLDG S R +D+FN
Sbjct: 1069 LLDKLLIRLKETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRFN 1128
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
DSP F FLLS +AGG+G+NL ADTVIIFD+DWNPQ DLQA+ARAHRIGQK V + R
Sbjct: 1129 AVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYR 1188
Query: 184 FETVQTVEEQVRASAEHKLGVAN-------QSITAGFFDNNTSAEDRREYLESLLR 232
+ +VEE + A+ K+ + + +S TA N S +E LE++L+
Sbjct: 1189 LVSKSSVEEDILERAKQKMVLDHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILK 1244
Score = 49 (22.3 bits), Expect = 5.2e-38, Sum P(3) = 5.2e-38
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 652 SRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKS-NLQSENNSGGLRLSK 702
S+ T SGG + + S +D S+ S+S N S NNS SK
Sbjct: 1854 SKYTASGGKELKSLYDKMKKSSSSNNDSSSSSSSRSSNSSSSNNSNSSSSSK 1905
Score = 45 (20.9 bits), Expect = 2.2e-37, Sum P(3) = 2.2e-37
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 653 RKTQSG--GVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNS 695
+KT G V P + G+R S + + SKS+ S+++S
Sbjct: 1685 KKTSFGRLSVPPNKMGERSPSKSTTTTTTTTTSSSKSSRNSKHHS 1729
Score = 44 (20.5 bits), Expect = 5.2e-38, Sum P(3) = 5.2e-38
Identities = 24/103 (23%), Positives = 44/103 (42%)
Query: 215 DNNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXXXXXRSESEIDVFESVDKQRREEEM 274
++ + ED + Y ++LLR+C++ S+S++ + REE++
Sbjct: 1767 NHESDEEDDKYYDKNLLRKCQQ---YLSPIKELLENFRSLSDSKVQI-------SREEKV 1816
Query: 275 ATWRKLIRGLGTD-GEPLPPLPSRLVTDDDLKALYEAMKIYDA 316
+ +K + LG + L S + D D Y A K Y A
Sbjct: 1817 SKTKKYLLSLGKEISIILDEKKSANIKDLDSHLWYSASK-YTA 1858
Score = 42 (19.8 bits), Expect = 8.4e-38, Sum P(3) = 8.4e-38
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 355 EEQWTEEEFEKMCQAESSDSPKLKEEGLEKSL 386
+E + EEE +K + ++K E L+K +
Sbjct: 1650 DEDYMEEEEKKEKTKNTRTKKRIKSEELQKEI 1681
Score = 42 (19.8 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 651 QSRKTQSGGVT-PRRRGKRQALGSPPISDVSAGPESKSNLQSENNSG 696
Q+++ + G P++RG++ S I +VS + + ENN+G
Sbjct: 1570 QTKEKEEGEFKIPKKRGRK----SKEIKEVSNNNHNNKETK-ENNNG 1611
Score = 42 (19.8 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 19/83 (22%), Positives = 31/83 (37%)
Query: 889 VSVPVKRHGRKTP-------TTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQ---HSQNK 938
+SVP + G ++P TT + + S D D N + +
Sbjct: 1692 LSVPPNKMGERSPSKSTTTTTTTTTSSSKSSRNSKHHSDDDDDDYRDKDSNSGRGRGRGR 1751
Query: 939 SRDSFGSKTISLRSKQETADVND 961
S +S S + S R+K +D D
Sbjct: 1752 SSNSSSSSSSSSRNKNHESDEED 1774
Score = 40 (19.1 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 17/91 (18%), Positives = 37/91 (40%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLG-G 1865
+S+ P K+ E ++ T T S+ +S + +D + + G G G
Sbjct: 1692 LSVPPNKMGERSPSKSTTTTTTTTTSSSKSSRNSKHHSDDDD-DDYRDKDSNSGRGRGRG 1750
Query: 1866 ATVMEKSSEDLATPPLSLANEEEMIEGFDND 1896
+ SS ++ + ++EE + +D +
Sbjct: 1751 RSSNSSSSSSSSSRNKNHESDEEDDKYYDKN 1781
Score = 38 (18.4 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPS 2226
EEEK E K + +I+S+E + + P G +++ G PS
Sbjct: 1656 EEEKKE---KTKNTRTKKRIKSEELQKEILSPKKTSFGRLSVPPNKMGERSPS 1705
Score = 37 (18.1 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 361 EEFEKMCQAESSDSPKLKEEGLEKSLP 387
++ K +SS K KEEG E +P
Sbjct: 1557 KDISKTTNKKSSKQTKEKEEG-EFKIP 1582
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 470 (170.5 bits), Expect = 6.7e-38, Sum P(5) = 6.7e-38
Identities = 104/233 (44%), Positives = 143/233 (61%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEV--------DTLIPKHYLPPIVRLCGKLE 63
G + ++ N++MELR CNHPYL E++ + P L +++ GKL
Sbjct: 1234 GQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLV 1293
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 1294 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1353
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V + R
Sbjct: 1354 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYR 1413
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 233
T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1414 LITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1466
Score = 63 (27.2 bits), Expect = 6.7e-38, Sum P(5) = 6.7e-38
Identities = 37/182 (20%), Positives = 64/182 (35%)
Query: 2028 RGDGIVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAE 2087
RG G P +G +P V+ + + E+ + + E
Sbjct: 2135 RGAGNTSSLNPLAVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEE 2194
Query: 2088 GGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQ 2147
+ Q+ SS E + +E GS+ S + +E K D + S +
Sbjct: 2195 ETDGSGKESKQECEAEASSVKNELKGVE-VGADTGSKSISEKGSEEDEEEKLEDDDKSEE 2253
Query: 2148 TAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMD 2207
++ G VS + + AS A +E + E SV+Q+ + A +F P D
Sbjct: 2254 SSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMEDGDPSVAQLLHERTFAFSFWPKD 2313
Query: 2208 VV 2209
V
Sbjct: 2314 RV 2315
Score = 63 (27.2 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSED 1875
EE+T+GS K+ A+ ++ ++ G ++G G ++ EK SE+
Sbjct: 2193 EEETDGSGKESKQECEAEASSVKNELK-GVEVGADTGSKSISEKGSEE 2239
Score = 58 (25.5 bits), Expect = 6.7e-38, Sum P(5) = 6.7e-38
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEP 2021
V + D+K AE +L GG E +E+E E + P +D+ + P +
Sbjct: 1821 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSPSEDK 1879
Query: 2022 CVQMDVRGDGIVPETVPEELG 2042
M++ G E+ ELG
Sbjct: 1880 EESMEIHATGKHSES-NAELG 1899
Score = 56 (24.8 bits), Expect = 8.4e-35, Sum P(6) = 8.4e-35
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 1277 KSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSASPE 1336
+ T+G K + A+ S L G + + T ++S K + + +E S E
Sbjct: 2194 EETDGSGKESKQECEAEASSVKNELKGVEVGADTGSKSISEKGSEEDEEEKLEDDDKSEE 2253
Query: 1337 RSGPQNSAV 1345
S P+ AV
Sbjct: 2254 SSQPEAGAV 2262
Score = 52 (23.4 bits), Expect = 1.3e-34, Sum P(6) = 1.3e-34
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 1701 EKSEELGLPSLSSATKE-EKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENL 1759
+K+E G P T E + SLDK +S+L LED G+++D G + N
Sbjct: 2940 DKAE--GGPFKDGETLEGSDAEESLDKTAESSL--LEDEIAQ-GEELDSLDGGDEIENNE 2994
Query: 1760 SD 1761
+D
Sbjct: 2995 ND 2996
Score = 50 (22.7 bits), Expect = 2.4e-35, Sum P(5) = 2.4e-35
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 518 STPMQPKGRGRRIQ-SGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
S P Q + R R+I+ E+ +RR + +V + S N Q + L+ +
Sbjct: 2395 SVPRQRRRRRRKIEIEAERAAKRRNL-MEMVAQLRESQVVSE------NGQEKVVDLSKA 2447
Query: 577 GGESTATDGNVSSIPTAPVPDSVS 600
E+T++ N SS+ + + +VS
Sbjct: 2448 SREATSSTSNFSSLSSKFILPNVS 2471
Score = 49 (22.3 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 45/191 (23%), Positives = 71/191 (37%)
Query: 2042 GLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLG 2101
GL ++P+ S +GE KG + E N D+E + T D
Sbjct: 2814 GLLNNPLSAATGNTTTASSQGEPEDSTSKGEEKGNENEDENK-DSE-----KST---DA- 2863
Query: 2102 LPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIP-V 2160
+S++D + + P G +A L + P S G G +++P
Sbjct: 2864 --VSAADSANGSVGAATAPAGLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGF 2921
Query: 2161 P-----EEADGPASFLAAEE-EKNECSDKEPV-GSSVSQ-----IESK--EPEAKAFEPM 2206
P + A G + AA++ E D E + GS + ES E E E +
Sbjct: 2922 PALAGLQNAVGSSEEKAADKAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEEL 2981
Query: 2207 DVVDGAVALEN 2217
D +DG +EN
Sbjct: 2982 DSLDGGDEIEN 2992
Score = 49 (22.3 bits), Expect = 2.7e-34, Sum P(6) = 2.7e-34
Identities = 20/68 (29%), Positives = 27/68 (39%)
Query: 1818 LDIPASLATPEEKTEGSEKDP-DSSFAAQEDPKESVVEAGD-QMGVSLGGATVMEKSSED 1875
L+ P S AT T S+ +P DS+ +E E+ E D + A S
Sbjct: 2816 LNNPLSAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVG 2875
Query: 1876 LATPPLSL 1883
AT P L
Sbjct: 2876 AATAPAGL 2883
Score = 48 (22.0 bits), Expect = 4.9e-35, Sum P(5) = 4.9e-35
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 1128 TPVSSEAPASTEAFEQEKVTNTSSFVNLADLS-SDDKTCSVTPAMETAPGFDIPIEKGVE 1186
TP + ++P +F + S V A +S S+D T S + E A +P ++
Sbjct: 2350 TPTTVDSPLQKRSFAE------LSMVGQASISGSEDITTSPQLSKEDALNLSVPRQRRRR 2403
Query: 1187 QSGTEIDAK 1195
+ EI+A+
Sbjct: 2404 RRKIEIEAE 2412
Score = 47 (21.6 bits), Expect = 6.7e-38, Sum P(5) = 6.7e-38
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ K+ L GAD+ E V +PE
Sbjct: 1749 RQEVIGDQADKI--LEGADSSEADVWIPE 1775
Score = 47 (21.6 bits), Expect = 4.3e-34, Sum P(6) = 4.3e-34
Identities = 45/176 (25%), Positives = 69/176 (39%)
Query: 1707 GLPSLSSATKEEKIDGSLDKDPDS----NLVVLEDS-KGSIGDQMDCCQSGVVVPENLSD 1761
G P S++ EEK + + D++ DS + V DS GS+G +G+ P N
Sbjct: 2834 GEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAAT--APAGL--PSNPLA 2889
Query: 1762 FCQPS--SSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLD 1819
F P S++AP S P L G A AG Q + EK + +
Sbjct: 2890 F-NPFLLSTMAP--GLFYPSMFLPPGLGGLTLPGFP---ALAGLQNAVGSSEEKAADKAE 2943
Query: 1820 IPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSED 1875
E EGS+ + A+ E + G+++ SL G +E + D
Sbjct: 2944 --GGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELD-SLDGGDEIENNEND 2996
Score = 44 (20.5 bits), Expect = 2.4e-35, Sum P(5) = 2.4e-35
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 664 RRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQ 723
RRG+R P S+++ + + + S + L L S+ G Q L N +Q
Sbjct: 2716 RRGRR------PKSEIARAAAAAAAVASTSGINPL-LVNSLFAGMDLTSLQNLQNLQSLQ 2768
Query: 724 -------PCGVATSADVAGPDQKPA 741
P G+AT+A G + PA
Sbjct: 2769 LAGLMGFPPGLATAATAGGDAKNPA 2793
Score = 44 (20.5 bits), Expect = 9.8e-35, Sum P(5) = 9.8e-35
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 572 SLNPSGGEST-ATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNL 628
SL+ E T A + ++ + PT +P SP G +DP + + +N E T L
Sbjct: 2533 SLSAEDAEVTKAFEEDIETPPTRNIP---SP-------GQLDPDTRIPVINLEDGTRL 2580
Score = 43 (20.2 bits), Expect = 4.9e-35, Sum P(5) = 4.9e-35
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 1810 MPEKLPEHLDIP-ASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATV 1868
MP +P++ D+ +S P++K ++P+ +E V + G +GGA
Sbjct: 2605 MPSYVPKNADVLFSSFQKPKQKRHRC-RNPNKLDINTLTGEERVPVVNKRNGKKMGGA-- 2661
Query: 1869 MEKSSEDL 1876
M +DL
Sbjct: 2662 MAPPMKDL 2669
Score = 42 (19.8 bits), Expect = 7.8e-35, Sum P(5) = 7.8e-35
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 1764 QPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMD----ISIMPEKLPEHLD 1819
+P + A + K +G E++ S E +E AEA + + + + + +
Sbjct: 2177 EPENPAA--KEKCEGKEEEEETDG-SGKESKQECEAEASSVKNELKGVEVGADTGSKSIS 2233
Query: 1820 IPASLATPEEKTEGSEKDPDSS 1841
S EEK E +K +SS
Sbjct: 2234 EKGSEEDEEEKLEDDDKSEESS 2255
Score = 42 (19.8 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 534 EQVP---RRRGKKIGLVLPAASDDIP 556
E+VP +R GKK+G + D+P
Sbjct: 2645 ERVPVVNKRNGKKMGGAMAPPMKDLP 2670
Score = 41 (19.5 bits), Expect = 6.7e-38, Sum P(5) = 6.7e-38
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQ 368
YG G R ++ S Y+ Q TE++ E +C+
Sbjct: 1616 YGWG-RWTDILSHGRYKRQLTEQDVETICR 1644
Score = 40 (19.1 bits), Expect = 1.2e-34, Sum P(5) = 1.2e-34
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 1965 EDSKGFEAEACDQLHVLRGGGVVAETVQEE--EKTELSCEKQPI-GSSVDDESKGPE 2018
E + EAEA + L+G V A+T + EK E++ + +ES PE
Sbjct: 2202 ESKQECEAEASSVKNELKGVEVGADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPE 2258
Score = 40 (19.1 bits), Expect = 2.1e-34, Sum P(6) = 2.1e-34
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 977 KAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPTVETPPPGFNSPN 1033
K + G EG D E A+ + ++ PT P PG P+
Sbjct: 2510 KRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPD 2566
Score = 38 (18.4 bits), Expect = 8.4e-35, Sum P(6) = 8.4e-35
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 1113 EQSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
E R +PE K TP E + ++K
Sbjct: 1847 EFDREDEDPEYKPTRTPFKDEIDEFANSPSEDK 1879
Score = 38 (18.4 bits), Expect = 1.3e-34, Sum P(6) = 1.3e-34
Identities = 26/91 (28%), Positives = 34/91 (37%)
Query: 1335 PERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDAIVNNLLETPL----DIKSIGG--PIVS 1388
P G S G KSEI A A S + +N LL L D+ S+ + S
Sbjct: 2707 PVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQNLQNLQS 2766
Query: 1389 MKAADVADADHPLETAVELGSPV-NSCTVEP 1418
++ A + L TA G N V P
Sbjct: 2767 LQLAGLMGFPPGLATAATAGGDAKNPAAVLP 2797
Score = 38 (18.4 bits), Expect = 3.2e-34, Sum P(5) = 3.2e-34
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 1380 KSIGGPIVSMKAADVADADHPLETAVE 1406
K+ GGP + + +DA+ L+ E
Sbjct: 2941 KAEGGPFKDGETLEGSDAEESLDKTAE 2967
Score = 38 (18.4 bits), Expect = 5.5e-33, Sum P(6) = 5.5e-33
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 1218 ENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLE 1271
E +TDG E ++ + S VK + +D ++ SE+ + LE
Sbjct: 2193 EEETDGSGKESKQECEAEASSVKNELKGVEVGADTGSKSISEKGSEEDEEEKLE 2246
Score = 37 (18.1 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKN 2178
G A+ + A V IP P A+ PA + E +K+
Sbjct: 1754 GDQADKILEGADSSEADVWIPEPFHAEVPADWWDKEADKS 1793
Score = 37 (18.1 bits), Expect = 5.4e-34, Sum P(6) = 5.4e-34
Identities = 21/94 (22%), Positives = 39/94 (41%)
Query: 292 PPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHY-GRGKRARE 350
PP+ S D+ + L +A + P+ N K K E G + + G GK +++
Sbjct: 2154 PPVISSAHIQDE-RVLEQAEGKVEEPE-----NPAAKEKCE--GKEEEEETDGSGKESKQ 2205
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
E + E + + + S + E+G E+
Sbjct: 2206 ECEAEASSVKNELKGVEVGADTGSKSISEKGSEE 2239
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 461 (167.3 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 105/231 (45%), Positives = 140/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L V G
Sbjct: 428 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSG 482
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+
Sbjct: 483 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSIN 542
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N+ +S F+F+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V
Sbjct: 543 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 602
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V RF T TVEE++ AE KL + + I G D N + + E L+ +
Sbjct: 603 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 653
Score = 42 (19.8 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P + A +EE+ + + P+ ++E KE
Sbjct: 795 IGYKVPRSPDLPNAAQAQKEEQLKIDEAGPLNDE--ELEEKE 834
Score = 40 (19.1 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 1124 KGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
K E+ + P + E E+++ T F N
Sbjct: 813 KEEQLKIDEAGPLNDEELEEKEKLLTQGFTN 843
Score = 39 (18.8 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 34/162 (20%), Positives = 61/162 (37%)
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHK 1625
D DI+ G A ++ + ES+ + +D V G D E I
Sbjct: 670 DEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEW 729
Query: 1626 SE--NMGEKDDISSEHAFGSSL-VLQDKASEAEIGDRIDEPQVDGFS--PRSMSGVVDEL 1680
E K + + + F +L V + KA +A + +P V F P + ++++
Sbjct: 730 IEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPK--QPNVQDFQFFPPRLFELLEKE 787
Query: 1681 VDEAGDHMG--VSHSP--VHVVEREKSEELGLPSLSSATKEE 1718
+ +G V SP + + +K E+L + EE
Sbjct: 788 ILYYRKTIGYKVPRSPDLPNAAQAQKEEQLKIDEAGPLNDEE 829
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 481 (174.4 bits), Expect = 7.1e-38, Sum P(4) = 7.1e-38
Identities = 110/246 (44%), Positives = 153/246 (62%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HY 51
+E+N + G++ + N++MELR CNHPYL + E++ DT P +
Sbjct: 1113 LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNPSASDFH 1172
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG
Sbjct: 1173 LQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVR 1232
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 1233 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1292
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDR--REY 226
RIGQ + V V R T + E ++ A KLG+ QS++ D+N S + ++
Sbjct: 1293 RIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR--DSNVSGIQQLSKKE 1350
Query: 227 LESLLR 232
+E LLR
Sbjct: 1351 IEDLLR 1356
Score = 68 (29.0 bits), Expect = 3.2e-37, Sum P(5) = 3.2e-37
Identities = 65/281 (23%), Positives = 113/281 (40%)
Query: 523 PKGRGRRIQSGEQVPR---RRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGE 579
P+ RI +G V RRG++ +P A+ +PG N + L P G +
Sbjct: 2601 PESMYERILTGPVVREEVSRRGRRPKSGVPKATIAAAAPGSSGPGNPL-LANGLLP-GVD 2658
Query: 580 STATDG---NVSSIPTAPVPDSVS--PSAVK--GQSGTID---PS--SAVAALNSELNTN 627
TA N+ ++ + V + P+ + G++ T+ P S +A L + L
Sbjct: 2659 LTALQALQQNLQNLQSLHVTAGLMGMPAGLSSGGEAKTMAAMFPMLFSGMAGLPNLLGMG 2718
Query: 628 -LATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAG--PE 684
L + + +G+ +T+S +P G+R GSP S +A P
Sbjct: 2719 GLLSKTAESGAEGKKGNDSKELEGKKERTESQ--SPENGGERCVPGSPSTSSTAAATKPL 2776
Query: 685 SKSNLQSENNS-GGLRLSKSVSMGKQDALSQELSNKIQVQP-----CGVATSADVAGPDQ 738
+ + L N G+ L+ +++ ALSQ SN VQ + S ++ D
Sbjct: 2777 ALNPLLLSNMLYPGMLLTPGLNL-HLPALSQ--SNTFDVQKNKSSDLESSKSVEIKEEDS 2833
Query: 739 KPAEQSVRVVQSNQPINLPATHDSSSQPS-GSTPAQVPSMD 778
+ +Q + P+N +T + S + S GS + S D
Sbjct: 2834 RGRDQEEKGGTEPSPLNENSTDEGSERASSGSDSSSSSSED 2874
Score = 58 (25.5 bits), Expect = 7.1e-38, Sum P(4) = 7.1e-38
Identities = 41/173 (23%), Positives = 70/173 (40%)
Query: 651 QSRKTQS-GGVTPRRRGKRQALGSPPISDVSAGP-ESKSNLQSENNSGGLRLSKSVSMGK 708
QS + +S + R R K + + SP +S P E KS +SE + + V+
Sbjct: 2058 QSSEEESMSSMETRTRVKSEPV-SPKNGVLSQAPGEQKSGGKSETDR------RMVAART 2110
Query: 709 QDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSG 768
+ S K +V G +S+D + D + + S R S+ + + SS S
Sbjct: 2111 EPLTPNPASKKQRVHKRGSESSSD-SDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSS 2169
Query: 769 ST--PAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQS 819
S+ A S + +S + SE S S+ V + KA + ++ S
Sbjct: 2170 SSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKREGTPHAKAYDEESVAS 2222
Score = 55 (24.4 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 40/222 (18%), Positives = 82/222 (36%)
Query: 1119 NNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTP---AMETAP 1175
++P + G + P+ + +E+ +E ++ ++ + + K+ V+P + AP
Sbjct: 2031 SSPRLLGAKGPLVEDVRVKSESLAEEPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQAP 2090
Query: 1176 GFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDD 1235
G +K +S T+ V + PL V K +++ DS D+ +
Sbjct: 2091 GE----QKSGGKSETD-RRMVAARTEPLTPNPASKKQRVHKRGSESSSDS-----DSDSE 2140
Query: 1236 HSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHS 1295
S S S ++S SS + S+ S S + + +D
Sbjct: 2141 RSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSE 2200
Query: 1296 RETPILSGSP-INSGTECSTVSVKTDVGNHPQNVEPTSASPE 1336
E G+P + E S S+ + + ++ +PE
Sbjct: 2201 EEVQKREGTPHAKAYDEESVASLSATQDETQDSFQASNGAPE 2242
Score = 55 (24.4 bits), Expect = 2.8e-35, Sum P(5) = 2.8e-35
Identities = 50/214 (23%), Positives = 83/214 (38%)
Query: 1625 KSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEA 1684
KSE++ E+ SSE ++ S E R+ V SP++ GV+ + E
Sbjct: 2049 KSESLAEEPQ-SSE---------EESMSSMETRTRVKSEPV---SPKN--GVLSQAPGEQ 2093
Query: 1685 GDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKI-----DGSLDKDPDSNLVVLEDSK 1739
G S + +V ++E L P+ A+K++++ + S D D DS
Sbjct: 2094 KSG-GKSETDRRMVAA-RTEPL-TPN--PASKKQRVHKRGSESSSDSDSDSERSSCSSRS 2148
Query: 1740 GSIGDQMDCCQSGVVVPENLSDFCQP----SSSLAPWEAKIDGSSEKDPVSSQSVLEGSK 1795
S C S + S C SSS + + SS ++ S + V +
Sbjct: 2149 SSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKREG 2208
Query: 1796 ETVAEAGDQMDISIMPEKLPEHLD-IPASLATPE 1828
A+A D+ ++ + E D AS PE
Sbjct: 2209 TPHAKAYDEESVASLSATQDETQDSFQASNGAPE 2242
Score = 53 (23.7 bits), Expect = 2.0e-36, Sum P(4) = 2.0e-36
Identities = 33/179 (18%), Positives = 72/179 (40%)
Query: 518 STPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSG 577
S P+ PK GEQ + + ++ A ++ + P+P + +Q + + S
Sbjct: 2076 SEPVSPKNGVLSQAPGEQKSGGKSETDRRMVAARTEPLT---PNPASKKQRVHKRGSESS 2132
Query: 578 GESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXX 637
+S + D SS + S S S +SG+ SS+ S +++ +++
Sbjct: 2133 SDSDS-DSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSC---SSASSSSSSSSSSSSS 2188
Query: 638 XXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGP-ESKSNLQSENNS 695
++ + +K + TP + A ++ +SA E++ + Q+ N +
Sbjct: 2189 SSSSSSEESDSEEEVQKREG---TPHAK----AYDEESVASLSATQDETQDSFQASNGA 2240
Score = 52 (23.4 bits), Expect = 3.7e-37, Sum P(4) = 3.7e-37
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 1622 PEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPR 1671
PE+K KDDI + + LV+ D + GD++ P + R
Sbjct: 1736 PEYKPAPAIFKDDIEDDVSSPGDLVIADGEGQLMEGDKVYWPTPSALTTR 1785
Score = 50 (22.7 bits), Expect = 9.0e-35, Sum P(5) = 9.0e-35
Identities = 26/117 (22%), Positives = 47/117 (40%)
Query: 1253 VIGNVPGNTSEDSSKMPLETPLIMKSTEG--PSVSMKADDVADHSRETPILSGSPINSGT 1310
V+ PG + K + ++ TE P+ + K V H R + S S +S +
Sbjct: 2085 VLSQAPGE-QKSGGKSETDRRMVAARTEPLTPNPASKKQRV--HKRGSE--SSSDSDSDS 2139
Query: 1311 ECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDA 1367
E S+ S ++ + +S S RSG +S+ C + S + + S +
Sbjct: 2140 ERSSCSSRSSSSS-----SSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSS 2191
Score = 48 (22.0 bits), Expect = 1.4e-34, Sum P(5) = 1.4e-34
Identities = 21/113 (18%), Positives = 40/113 (35%)
Query: 932 NQHSQNKSRDSFGSKTISLRSKQETADVNDVARV-MKEIFSETCSSKAKTGDSSLNEGKD 990
++ S + DS S S S ++ +R S +CSS + + SS +
Sbjct: 2129 SESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSS 2188
Query: 991 XXXXXXXXXXXXXEVAKKQSS-------DDKTCSVTPTVETPPPGFNSPNENP 1036
EV K++ + ++ S++ T + F + N P
Sbjct: 2189 SSSSSSEESDSEEEVQKREGTPHAKAYDEESVASLSATQDETQDSFQASNGAP 2241
Score = 46 (21.3 bits), Expect = 7.1e-38, Sum P(4) = 7.1e-38
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 924 SAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKEIFSETCSSKAKTG-D 982
S FD + N+ S +S S K R + + + E ++ S +A +G D
Sbjct: 2807 SNTFDVQKNKSSDLESSKSVEIKEEDSRGRDQEEKGGTEPSPLNENSTDEGSERASSGSD 2866
Query: 983 SSLNEGKD 990
SS + +D
Sbjct: 2867 SSSSSSED 2874
Score = 45 (20.9 bits), Expect = 3.7e-37, Sum P(4) = 3.7e-37
Identities = 33/174 (18%), Positives = 62/174 (35%)
Query: 1699 EREKSEELGLPSLSSAT--KEEKI---DGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGV 1753
E + SEE + S+ + T K E + +G L + P K +M ++
Sbjct: 2056 EPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQAPGEQK---SGGKSETDRRMVAARTEP 2112
Query: 1754 VVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEK 1813
+ P S + + + D SE+ SS+S S + + + S
Sbjct: 2113 LTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSC 2172
Query: 1814 LPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGAT 1867
+S ++ + S ++ DS Q+ +A D+ V+ AT
Sbjct: 2173 SSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKREGTPHAKAYDEESVASLSAT 2226
Score = 43 (20.2 bits), Expect = 3.2e-37, Sum P(5) = 3.2e-37
Identities = 16/76 (21%), Positives = 26/76 (34%)
Query: 466 STSASASLPXXXXXXXXXXXAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKG 525
S S +S H G + SS + + + S S+S+ S+
Sbjct: 2137 SDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCS----SASSSSSSSSSSSSSSSSS 2192
Query: 526 RGRRIQSGEQVPRRRG 541
S E+V +R G
Sbjct: 2193 SSEESDSEEEVQKREG 2208
Score = 43 (20.2 bits), Expect = 6.0e-37, Sum P(4) = 6.0e-37
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 2064 SASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGS 2123
S S G S + ++ + + + S S+ E +K EG
Sbjct: 2156 SCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKREGTPHAKAY 2215
Query: 2124 EKESIAS-AVPLDESK 2138
++ES+AS + DE++
Sbjct: 2216 DEESVASLSATQDETQ 2231
Score = 43 (20.2 bits), Expect = 4.6e-34, Sum P(5) = 4.6e-34
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 1009 QSSDDKTCSVTPT---VETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTE 1065
QSS++++ S T V++ P SP G L+ + G + +A++TE
Sbjct: 2058 QSSEEESMSSMETRTRVKSEPV---SPKN--GVLSQAPGEQK-SGGKSETDRRMVAARTE 2111
Query: 1066 ALKPENKAQAGRIENIANSSPDD 1088
L P ++ R+ + S D
Sbjct: 2112 PLTPNPASKKQRVHKRGSESSSD 2134
Score = 42 (19.8 bits), Expect = 7.1e-38, Sum P(4) = 7.1e-38
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R RE+ S ++ Q E + E +C+A
Sbjct: 1504 YGWG-RWREILSHGRFKRQLNEHDVEVICRA 1533
Score = 42 (19.8 bits), Expect = 7.6e-37, Sum P(4) = 7.6e-37
Identities = 19/100 (19%), Positives = 38/100 (38%)
Query: 2123 SEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSD 2182
SE+ S +S S + S ++ S + +S ++ +E SD
Sbjct: 2139 SERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESD 2198
Query: 2183 KEPVGSSVSQIESKE--PEAKAFEPMDVVDGAVALENTSE 2220
E +++ +E P AKA++ V + + T +
Sbjct: 2199 SE------EEVQKREGTPHAKAYDEESVASLSATQDETQD 2232
Score = 38 (18.4 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1778 GSSEKDPVSSQSVLEGSKETVAEAGDQMDIS 1808
G +E P++ S EGS E + D S
Sbjct: 2842 GGTEPSPLNENSTDEGS-ERASSGSDSSSSS 2871
Score = 37 (18.1 bits), Expect = 3.2e-37, Sum P(5) = 3.2e-37
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1821 PASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P + + +E +E + DSS ++ ED S
Sbjct: 2848 PLNENSTDEGSERASSGSDSSSSSSEDSDSS 2878
Score = 37 (18.1 bits), Expect = 2.1e-35, Sum P(4) = 2.1e-35
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 1868 VMEKSSEDLATPPLSLANEEEMIEGFDNDP 1897
V+++ E LA P L+ + ++ G N P
Sbjct: 1661 VIQQPHETLAAPWAPLSCDFWLLLGLSNSP 1690
Score = 37 (18.1 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 746 RVVQSNQPINLPATHDSSSQPSGSTPAQV 774
R++ + Q N H +QP+ S PA V
Sbjct: 1788 RLITAYQRTN-KNRHIQQAQPTFSVPASV 1815
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 458 (166.3 bits), Expect = 7.2e-38, Sum P(2) = 7.2e-38
Identities = 106/231 (45%), Positives = 139/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 435 MKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 489
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R I+
Sbjct: 490 KMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIE 549
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA RAHRIGQK+ V
Sbjct: 550 AFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 609
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V R T TVEE++ AE KL + + I G D ++ + E L+ +
Sbjct: 610 VFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMI 660
Score = 45 (20.9 bits), Expect = 7.2e-38, Sum P(2) = 7.2e-38
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P +A EE+ + EP+ + + E KE
Sbjct: 802 IGYKVPRNPDIPNPAVAQREEQKKIDGAEPL--TPEETEEKE 841
Score = 37 (18.1 bits), Expect = 5.0e-37, Sum P(2) = 5.0e-37
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPD 1729
++ ++ P+++ +++KIDG+ P+
Sbjct: 808 RNPDIPNPAVAQREEQKKIDGAEPLTPE 835
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 462 (167.7 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
Identities = 105/231 (45%), Positives = 140/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L V G
Sbjct: 429 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSG 483
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+
Sbjct: 484 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESIN 543
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N+ +S F+F+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V
Sbjct: 544 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 603
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V RF T TVEE++ AE KL + + I G D N + + E L+ +
Sbjct: 604 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
Score = 49 (22.3 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P + A +EE+ + + EP+ ++E KE
Sbjct: 796 IGYKVPRNPDLPNAAQAQKEEQLKIDEAEPLNDE--ELEEKE 835
Score = 40 (19.1 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 1103 GFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
G+ +P N N + K E+ + P + E E+++ T F N
Sbjct: 797 GYKVP---RNPDLPNAAQAQ-KEEQLKIDEAEPLNDEELEEKEKLLTQGFTN 844
Score = 37 (18.1 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPE 1616
D DI+ G A ++ + ES+ + +D V G D E
Sbjct: 671 DEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYRE 721
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 462 (167.7 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
Identities = 105/231 (45%), Positives = 140/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L V G
Sbjct: 429 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSG 483
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+
Sbjct: 484 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESIN 543
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N+ +S F+F+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V
Sbjct: 544 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 603
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V RF T TVEE++ AE KL + + I G D N + + E L+ +
Sbjct: 604 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
Score = 49 (22.3 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P + A +EE+ + + EP+ ++E KE
Sbjct: 796 IGYKVPRNPDLPNAAQAQKEEQLKIDEAEPLNDE--ELEEKE 835
Score = 40 (19.1 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 1103 GFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
G+ +P N N + K E+ + P + E E+++ T F N
Sbjct: 797 GYKVP---RNPDLPNAAQAQ-KEEQLKIDEAEPLNDEELEEKEKLLTQGFTN 844
Score = 37 (18.1 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPE 1616
D DI+ G A ++ + ES+ + +D V G D E
Sbjct: 671 DEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYRE 721
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 462 (167.7 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
Identities = 105/231 (45%), Positives = 140/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L V G
Sbjct: 429 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSG 483
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+
Sbjct: 484 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESIN 543
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N+ +S F+F+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V
Sbjct: 544 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 603
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V RF T TVEE++ AE KL + + I G D N + + E L+ +
Sbjct: 604 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
Score = 49 (22.3 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P + A +EE+ + + EP+ ++E KE
Sbjct: 796 IGYKVPRNPDLPNAAQAQKEEQLKIDEAEPLNDE--ELEEKE 835
Score = 40 (19.1 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 1103 GFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
G+ +P N N + K E+ + P + E E+++ T F N
Sbjct: 797 GYKVP---RNPDLPNAAQAQ-KEEQLKIDEAEPLNDEELEEKEKLLTQGFTN 844
Score = 37 (18.1 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPE 1616
D DI+ G A ++ + ES+ + +D V G D E
Sbjct: 671 DEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYRE 721
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 461 (167.3 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 105/231 (45%), Positives = 140/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L V G
Sbjct: 429 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSG 483
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R I+
Sbjct: 484 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSIN 543
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N+ +S F+F+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V
Sbjct: 544 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 603
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V RF T TVEE++ AE KL + + I G D N + + E L+ +
Sbjct: 604 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
Score = 40 (19.1 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 34/162 (20%), Positives = 62/162 (38%)
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHK 1625
D DI+ G A ++ + ES+ + +D V G D E I
Sbjct: 671 DEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEW 730
Query: 1626 SE--NMGEKDDISSEHAFGSSL-VLQDKASEAEIGDRIDEPQVDGFS--PRSMSGVVDEL 1680
E K + + + F +L V + KA +A + +P V F P + ++++
Sbjct: 731 IEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPK--QPNVQDFQFFPPRLFELLEKE 788
Query: 1681 VDEAGDHMG--VSHSPV--HVVEREKSEELGLPSLSSATKEE 1718
+ +G V +P + + +K E+L + S EE
Sbjct: 789 ILFYRKTIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEE 830
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 464 (168.4 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 106/231 (45%), Positives = 140/231 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L V G
Sbjct: 414 MKDIDI-LNSAGKLDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMHL---VTNSG 468
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LLPKLK RVL FS MTR+LD++EDY ++ Y Y RLDG T +R A I+
Sbjct: 469 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASIN 528
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N+ S F+F+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ + V
Sbjct: 529 AYNEPGSSKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 588
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V RF T TVEE++ AE KL + + I G D N + + E L+ +
Sbjct: 589 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQMI 639
Score = 49 (22.3 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P + A +EE+ + + EP+ ++E KE
Sbjct: 781 IGYKVPRNPDLPNAAQAQKEEQLKIDEAEPLNDE--ELEEKE 820
Score = 43 (20.2 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1690 VSHSPVHVVEREKSEELGL-PSLSSATKEEKIDGSLD 1725
+ + + E+EK+E+ P SSA K K+DG+ D
Sbjct: 993 IERENMELEEKEKAEKKKRGPKPSSAQKR-KMDGTPD 1028
Score = 40 (19.1 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 1103 GFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
G+ +P N N + K E+ + P + E E+++ T F N
Sbjct: 782 GYKVP---RNPDLPNAAQAQ-KEEQLKIDEAEPLNDEELEEKEKLLTQGFTN 829
Score = 38 (18.4 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 1566 DGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPE 1616
D DI+ G A ++ + ES+ + +D V G D E
Sbjct: 656 DEDIDHILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYRE 706
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 418 (152.2 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 91/171 (53%), Positives = 118/171 (69%)
Query: 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 76
R+++N MELR CNHP L+ + + K +L VR CGKL +LDR+L KL+ T
Sbjct: 1272 RTLNNRCMELRKACNHPLLNYPYFNDFS----KDFL---VRSCGKLWILDRILIKLQRTG 1324
Query: 77 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136
HRVL FSTMT+LLD++E+YL +++ Y R+DG TS DR + I FN D+ FIFLLSI
Sbjct: 1325 HRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSI 1384
Query: 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187
RA G G+NLQ ADTV+I+D D NP+ + QA ARAHRIGQ R+V V+ E V
Sbjct: 1385 RAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAV 1435
Score = 101 (40.6 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 187 VQTVEEQVRASAE-HKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKK--EEXXXXX 243
+ ++E +R + + +K+ +A++ I AG FD T+ E+RR LE+LL + ++ E
Sbjct: 1467 IGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP 1526
Query: 244 XXXXXXXXXXRSESEIDVFESVDKQRR-EEEMATWRKLIRGL 284
RSE E+++F+ +D++ EEM ++ + L
Sbjct: 1527 SLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHEQVPKWL 1568
Score = 52 (23.4 bits), Expect = 3.5e-37, Sum P(4) = 3.5e-37
Identities = 58/294 (19%), Positives = 106/294 (36%)
Query: 521 MQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGES 580
+QP G G + G R + KKI DDI G +++E+ +S N G+
Sbjct: 1598 VQPGGPGGERKRG----RPKSKKINY--KEIEDDIA--GYSEESSEERNIDSGNEEEGDI 1649
Query: 581 TATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXXXXX 640
D + + A + G++ + + + N A
Sbjct: 1650 RQFDDD--ELTGALGDHQTNKGEFDGENPVCGYDYPPGSGSYKKNPPRDDAGSSGSSPES 1707
Query: 641 XXXXXMQTKGQSRKTQSGGVTPRRRGK--RQALGSPPISDVSAGPESKSNLQSENNSGGL 698
M + S+K S R G ++ L +++A +S +LQ +
Sbjct: 1708 HRSKEMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGSWAHD 1767
Query: 699 RLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQS-NQPINLP 757
R Q + ++ S I+++P A D G + PA Q ++V +S +
Sbjct: 1768 RDEGDEEQVLQPTIKRKRS--IRLRPRQTAERVD--GSEM-PAAQPLQVDRSYRSKLRTV 1822
Query: 758 ATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKA 811
SS Q + +++ S+ VAS +K +S S + + N +A
Sbjct: 1823 VDSHSSRQDQSDSSSRLRSVPAKKVASTSKLHVSSPKSGRLNATQLTVEDNAEA 1876
Score = 49 (22.3 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 2088 GGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKG 2139
G G+ ++ P+D S S E + + + PV S+K SA LD G
Sbjct: 1685 GSGSYKKNPPRD-DAGSSGSSPESHRSKEMASPVSSQKFGSLSA--LDTRPG 1733
Score = 49 (22.3 bits), Expect = 3.8e-36, Sum P(4) = 3.8e-36
Identities = 60/310 (19%), Positives = 113/310 (36%)
Query: 1549 DSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQL 1608
+ N E VP+ R+ + + ++ PS +LSSS I+ K +
Sbjct: 1557 EMTNHEQVPKWLRASTREVNATVADLSKKPSKNMLSSSNLIVQPGGPGGERKRGRPKSKK 1616
Query: 1609 LPGADNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGD-RIDEPQVDG 1667
+ + + + + E+ E++ S G D +GD + ++ + DG
Sbjct: 1617 INYKEIEDD---IAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGEFDG 1673
Query: 1668 FSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKD 1727
+P + G + +G + + P R+ + G S +KE S K
Sbjct: 1674 ENP--VCGY--DYPPGSGSYK--KNPP-----RDDAGSSGSSPESHRSKEMASPVSSQKF 1722
Query: 1728 PDSNLVVLEDSKGSIGDQM-DCCQSGVVVPENLSDF-CQPSSSLAPWEAKIDGSSEKDPV 1785
+L L+ GS+ ++ D + G + S Q S S W D E+ +
Sbjct: 1723 --GSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGS---WAHDRDEGDEEQVL 1777
Query: 1786 SSQSVLEGS-KETVAEAGDQMDISIMPEKLPEHLD--IPASLATPEEKTEGSEKDPDSSF 1842
+ S + + +++D S MP P +D + L T + + DSS
Sbjct: 1778 QPTIKRKRSIRLRPRQTAERVDGSEMPAAQPLQVDRSYRSKLRTVVDSHSSRQDQSDSSS 1837
Query: 1843 AAQEDPKESV 1852
+ P + V
Sbjct: 1838 RLRSVPAKKV 1847
Score = 48 (22.0 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 29/121 (23%), Positives = 50/121 (41%)
Query: 661 TPR----RRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRL-SKSVSMGKQDALSQE 715
TPR +GKRQ L + P ++ S+ S+ Q EN+ +++ K +G + + E
Sbjct: 2032 TPRGAGISQGKRQKLVNEPETEPSSPQRSQ---QRENSRIRVQIPQKETKLGGTTSHTDE 2088
Query: 716 LSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPAT---HDSSSQPSGSTPA 772
+ I P G D++ + R S+ P++ P S SG P
Sbjct: 2089 --SPILAHP-GELVICKKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPR 2145
Query: 773 Q 773
+
Sbjct: 2146 E 2146
Score = 45 (20.9 bits), Expect = 3.5e-37, Sum P(4) = 3.5e-37
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1124 KGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSD 1161
+G +PVS P T +Q++ N + N + + D
Sbjct: 2133 RGLRSPVSGGVPRETRLAQQQRWPNQPTHPNNSGAAGD 2170
Score = 44 (20.5 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 737 DQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSS 796
DQ + +R V + + + H SS + Q+ D + +T + S SSS
Sbjct: 1831 DQSDSSSRLRSVPAKKVASTSKLHVSSPKSGRLNATQLTVEDNAEASRETWDGTSPISSS 1890
Query: 797 KGG 799
G
Sbjct: 1891 NAG 1893
Score = 38 (18.4 bits), Expect = 1.9e-36, Sum P(4) = 1.9e-36
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 1835 EKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATP 1879
E +P S +Q+ + Q LGG T S LA P
Sbjct: 2051 ETEPSSPQRSQQRENSRIRVQIPQKETKLGGTTSHTDESPILAHP 2095
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 461 (167.3 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 97/228 (42%), Positives = 143/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 352 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLML 411
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 412 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 471
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 472 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 531
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 532 VTRASVEERITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 577
Score = 47 (21.6 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS 598
N + + L P G E + +SS P PVP S
Sbjct: 904 NGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPAS 937
Score = 45 (20.9 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 263 ESVDKQRREEEMATWRKLIRGLGTDGE-PLPPLPSRLVTDDDLKALYEAMK---IYDAPK 318
E D + R E + R+ R L +D + PLPPL +R+ + ++ + + +
Sbjct: 762 EDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMR 821
Query: 319 TGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLK 378
G+ P H D RGK +E R+Y + E + + +
Sbjct: 822 WGMPPQDAFN---SHWLVRDL----RGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVP 874
Query: 379 EEGLEK 384
EGL +
Sbjct: 875 REGLSR 880
Score = 44 (20.5 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 2120 PVGSEKESIASAVPLDESKGPDAEVSSQTA-IEG--GGVVSIPVPEEADGPASFLAAEEE 2176
P+G + A +DE K P A+ Q ++ + + ++ + PAS A EE
Sbjct: 945 PLGLPDKMEAQLGYMDE-KDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREE 1003
Query: 2177 KNECSDKEP 2185
+ E ++K P
Sbjct: 1004 RPEETEKAP 1012
Score = 42 (19.8 bits), Expect = 1.6e-36, Sum P(5) = 1.6e-36
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 340 QHYGRGKRAREVRSY------EEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
++ G+GKR R+ +Y +++W +E + Q+E S + ++E E+
Sbjct: 720 RNLGKGKRIRKQVNYNDASQEDQEWQDELSDN--QSEYSIGSEDEDEDFEE 768
Score = 38 (18.4 bits), Expect = 1.3e-35, Sum P(5) = 1.3e-35
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESV 1852
+S++ +K+ E + +TP+ EG E S DP V
Sbjct: 890 MSLVRKKVQEFEHVNGKYSTPDLIPEGPE-GKKSGEVISSDPNTPV 934
Score = 37 (18.1 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPM 2206
E +D + + E+++E ++ P G S + ++ ++ +P+
Sbjct: 747 ELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDKPL 791
Score = 37 (18.1 bits), Expect = 1.6e-36, Sum P(5) = 1.6e-36
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 522 QPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDI 555
+P+G+ R QS Q+ R K + +L +I
Sbjct: 769 RPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNI 802
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 483 (175.1 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 112/235 (47%), Positives = 150/235 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE-VDT-------LIPKHY-LPPIVRLCGKL 62
G++ ++ N++MELR CNHPYL AEE + T +IP + L +VR GKL
Sbjct: 1030 GHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKL 1089
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
++D+LLPKLKA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F
Sbjct: 1090 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 1149
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V
Sbjct: 1150 SKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVY 1209
Query: 183 RFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 233
R T + E ++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1210 RLITRNSYEREMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1263
Score = 53 (23.7 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 1234 DDHSLVKELIHRSPDH-SDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVA 1292
DD ++ E HR D+ SD+V G ED PL+ P + EG + M ++++
Sbjct: 1618 DDKAIAAE--HRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEIS 1675
Score = 53 (23.7 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 22/117 (18%), Positives = 47/117 (40%)
Query: 1780 SEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPD 1839
S+ P+ S+SV E ++ ++D+S KL +S ++ T+ SE + +
Sbjct: 2002 SDTTPLVSRSVPPVKLEDEDDSDSELDLS----KLSPSSSSSSSSSSSSSSTDESEDEKE 2057
Query: 1840 SSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDND 1896
A + + + + + + + + E + TP L L E + + D
Sbjct: 2058 EKLTADQS-RSKLYDEESLLSLPMSQDGFPNEDGEQM-TPELLLLQERQRASEWPKD 2112
Score = 49 (22.3 bits), Expect = 5.7e-37, Sum P(5) = 5.7e-37
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSEN 793
P +KP E++ V S + + L H+ ++ S TP D+ SDT ++S +
Sbjct: 1958 PVEKPPEETAAQVPSLESLTLKLEHEVVAR-SRPTPQDY---DMRVAPSDTTPLVSRS 2011
Score = 48 (22.0 bits), Expect = 1.6e-36, Sum P(4) = 1.6e-36
Identities = 24/126 (19%), Positives = 54/126 (42%)
Query: 1063 KTEALKPENKAQAGRIEN--IANS--SPDDKSLPMVPNLETAP------PGFDIPIEKHN 1112
+T A P ++ ++E+ +A S +P D + + P+ +T P P + E +
Sbjct: 1965 ETAAQVPSLESLTLKLEHEVVARSRPTPQDYDMRVAPS-DTTPLVSRSVPPVKLEDEDDS 2023
Query: 1113 EQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAME 1172
+ + + + SS + +ST+ E EK ++ + + L ++ S+ + +
Sbjct: 2024 DSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTADQSRSKLYDEESLLSLPMSQD 2083
Query: 1173 TAPGFD 1178
P D
Sbjct: 2084 GFPNED 2089
Score = 42 (19.8 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R R++ S ++ + TE + E +C+A
Sbjct: 1410 YGWG-RWRDILSHGRFKRRMTERDVETICRA 1439
Score = 40 (19.1 bits), Expect = 3.1e-37, Sum P(4) = 3.1e-37
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 1532 GDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALL 1583
G++K ++E +C+ + ++++L R + + DG + + E P A L
Sbjct: 2243 GNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVG--EDAPRRAEL 2292
Score = 38 (18.4 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEE 2175
GP + ++ G PVP A+ +A EE
Sbjct: 2147 GPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEE 2183
Score = 38 (18.4 bits), Expect = 5.3e-37, Sum P(3) = 5.3e-37
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 464 GQSTSASASLPXXXXXXXXXXXAQHV 489
G S++ SASLP + HV
Sbjct: 2416 GHSSATSASLPFMPFVMGGAASSPHV 2441
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 483 (175.1 bits), Expect = 2.4e-37, Sum P(5) = 2.4e-37
Identities = 112/235 (47%), Positives = 150/235 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE-VDT-------LIPKHY-LPPIVRLCGKL 62
G++ ++ N++MELR CNHPYL AEE + T +IP + L +VR GKL
Sbjct: 1077 GHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKL 1136
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
++D+LLPKLKA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F
Sbjct: 1137 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 1196
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V
Sbjct: 1197 SKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVY 1256
Query: 183 RFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 233
R T + E ++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1257 RLITRNSYEREMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1310
Score = 54 (24.1 bits), Expect = 2.4e-37, Sum P(5) = 2.4e-37
Identities = 23/125 (18%), Positives = 51/125 (40%)
Query: 1772 WEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKT 1831
+E ++ S+ P+ S+SV E ++ ++D+S KL +S ++ T
Sbjct: 2042 YEMRV-APSDTTPLVSRSVPPVKLEDEDDSDSELDLS----KLSPSSSSSSSSSSSSSST 2096
Query: 1832 EGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEEEMIE 1891
+ SE + + A + + + + +++ + E + TP L L E +
Sbjct: 2097 DESEDEKEEKLTADRS-RSKLYDEESLLSLTMSQDGFPNEDGEQM-TPELLLLQERQRAS 2154
Query: 1892 GFDND 1896
+ D
Sbjct: 2155 EWPKD 2159
Score = 53 (23.7 bits), Expect = 2.4e-37, Sum P(5) = 2.4e-37
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 1234 DDHSLVKELIHRSPDH-SDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVA 1292
DD ++ E HR D+ SD+V G ED PL+ P + EG + M ++++
Sbjct: 1665 DDKAIAAE--HRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEIS 1722
Score = 53 (23.7 bits), Expect = 6.5e-36, Sum P(5) = 6.5e-36
Identities = 25/126 (19%), Positives = 55/126 (43%)
Query: 1063 KTEALKPENKAQAGRIEN--IANS--SPDDKSLPMVPNLETAP------PGFDIPIEKHN 1112
+T A P ++ ++E+ +A S +P D + + P+ +T P P + E +
Sbjct: 2012 ETAAQVPSLESLTLKLEHEVVARSRPTPQDYEMRVAPS-DTTPLVSRSVPPVKLEDEDDS 2070
Query: 1113 EQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAME 1172
+ + + + SS + +ST+ E EK ++ + + L ++ S+T + +
Sbjct: 2071 DSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTADRSRSKLYDEESLLSLTMSQD 2130
Query: 1173 TAPGFD 1178
P D
Sbjct: 2131 GFPNED 2136
Score = 45 (20.9 bits), Expect = 4.3e-35, Sum P(5) = 4.3e-35
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSEN 793
P +KP E++ V S + + L H+ ++ S TP ++ SDT ++S +
Sbjct: 2005 PVEKPPEETAAQVPSLESLTLKLEHEVVAR-SRPTPQDY---EMRVAPSDTTPLVSRS 2058
Score = 42 (19.8 bits), Expect = 2.4e-37, Sum P(5) = 2.4e-37
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R R++ S ++ + TE + E +C+A
Sbjct: 1457 YGWG-RWRDILSHGRFKRRMTERDVETICRA 1486
Score = 40 (19.1 bits), Expect = 6.5e-36, Sum P(5) = 6.5e-36
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 1532 GDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALL 1583
G++K ++E +C+ + ++++L R + + DG + + E P A L
Sbjct: 2290 GNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVG--EDAPRRAEL 2339
Score = 38 (18.4 bits), Expect = 2.3e-36, Sum P(6) = 2.3e-36
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEE 2175
GP + ++ G PVP A+ +A EE
Sbjct: 2194 GPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEE 2230
Score = 38 (18.4 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 464 GQSTSASASLPXXXXXXXXXXXAQHV 489
G S++ SASLP + HV
Sbjct: 2463 GHSSATSASLPFMPFVMGGAASSPHV 2488
Score = 37 (18.1 bits), Expect = 2.4e-37, Sum P(5) = 2.4e-37
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 2216 ENTSEGMGGPSPPLVIAEDKTENEIEEDPV 2245
E + GM GP L+ + T E + PV
Sbjct: 2186 EMVTGGMLGPGNHLLDSPSLTPGEYGDSPV 2215
Score = 37 (18.1 bits), Expect = 2.3e-36, Sum P(6) = 2.3e-36
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEED 2243
T+ G PPL ED+ + + ++D
Sbjct: 2525 TTSGTALRLPPLQPEEDEDDEDEDDD 2550
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 455 (165.2 bits), Expect = 2.5e-37, Sum P(3) = 2.5e-37
Identities = 121/401 (30%), Positives = 208/401 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +++ GKL +
Sbjct: 961 EALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLL 1020
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN
Sbjct: 1021 LQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNA 1080
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1081 PGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1140
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ E K+E
Sbjct: 1141 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGE 1200
Query: 243 XXXXXXXXXXXRSES-------EIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP 295
+E+ D + D Q E ++++ K+ + + + + + +
Sbjct: 1201 NKEEDSSVIHYDNEAIARLLDRNQDATDDTDVQNMNEYLSSF-KVAQYVVREEDKIEEIE 1259
Query: 296 SRLVT-DDDLKALYEAMKI---YDAPKTGVSPNVGV-KRKGEHLGALDTQHYGRGKRARE 350
++ ++++ Y + Y+ + ++ N+G KR + + D + ++
Sbjct: 1260 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEY 1319
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 391
EE+ +E+F++ + +L+ E +K LP +++
Sbjct: 1320 SVGSEEE--DEDFDERPEGRRQSKRQLRNEK-DKPLPPLLA 1357
Score = 62 (26.9 bits), Expect = 2.5e-37, Sum P(3) = 2.5e-37
Identities = 24/80 (30%), Positives = 32/80 (40%)
Query: 496 SSQPTTAFVPVAP-GSQSASACPSTPMQP----KGRGRRI---QSGEQVPRRRGKKIGLV 547
+S PT P P S + S C S P P KG G R + + P + +K V
Sbjct: 1487 ASSPTKTS-PTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPEKSSKV 1545
Query: 548 LPAASDDIPSPGPDPKTNEQ 567
+I SP P P E+
Sbjct: 1546 GEKMETEIDSPSPAPSLGER 1565
Score = 56 (24.8 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKG 606
+P PDP + + S + +P+ T + + ++ P P + +PS KG
Sbjct: 1470 MPELMPDPSADSKRSSRASSPTKTSPTTPEASTTNSPCTSKPATPAPSE-KG 1520
Score = 45 (20.9 bits), Expect = 2.5e-37, Sum P(3) = 2.5e-37
Identities = 31/148 (20%), Positives = 59/148 (39%)
Query: 1790 VLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEK------TEGSEKDPDSSFA 1843
VL +E +++ + D++ +P L I A L E ++G+E P +F
Sbjct: 1787 VLNQLEELLSDM--KADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAFP 1844
Query: 1844 A---QEDPKESVVEAGDQMG-VSLGGATVMEKSSEDLAT-----PPLSLANEEEMIEGFD 1894
P + +G ++ GA + + T PP+ + E+EM+
Sbjct: 1845 PGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITATTNGPPVLVKKEKEMVGALV 1904
Query: 1895 NDPTGISMAVMDSKECAAEAADQMCVSE 1922
+D G+ D KE A + +C+ +
Sbjct: 1905 SDGLGL-----DRKE--PRAGEVICIDD 1925
Score = 45 (20.9 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 16/80 (20%), Positives = 33/80 (41%)
Query: 1304 SPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKC 1363
S +S T+ S + + N P +P + +P G + D +E P + E +
Sbjct: 1485 SRASSPTKTSPTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPEKSSK 1544
Query: 1364 PSDAIVNNLLETPLDIKSIG 1383
+ + + ++P S+G
Sbjct: 1545 VGEKMETEI-DSPSPAPSLG 1563
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 479 (173.7 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 109/234 (46%), Positives = 148/234 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQ-------LHAEEVDTLIPKHY-LPPIVRLCGKLE 63
G++ ++ N++MELR CNHPYL + E +IP+ + L +VR GKL
Sbjct: 1079 GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLV 1138
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 1139 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1198
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R
Sbjct: 1199 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 1258
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 233
T + E ++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1259 LITRNSYEREMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1311
Score = 52 (23.4 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 1234 DDHSLVKELIHRSPDH-SDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVA 1292
DD ++ E HR D+ SD+V G ED PL+ P EG + M ++++
Sbjct: 1666 DDKAIAAE--HRVLDNFSDLVEGIDFDKDCEDPEYKPLQGPPKDPDDEGDPLMMMDEEIS 1723
Score = 47 (21.6 bits), Expect = 2.3e-36, Sum P(4) = 2.3e-36
Identities = 18/90 (20%), Positives = 39/90 (43%)
Query: 1094 VPNLETAPPGFDIPIEKHNEQSRNQNNPEVK-----GEETPVSSEAPASTEAFEQEKVTN 1148
V + +TAP +P K ++ + + ++ + SS + +ST+ E EK
Sbjct: 2047 VGSSDTAPLSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEK 2106
Query: 1149 TSSFVNLADLSSDDKTCSVTPAMETAPGFD 1178
++ + L ++ S+T + + P D
Sbjct: 2107 LTADRSRPKLYDEESLLSLTMSQDGFPNED 2136
Score = 45 (20.9 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1078 IENIANSSPDDKSLPMVPNL--ETAPPGFDIPIEKHNEQSR---NQNNPEVKGEETPVSS 1132
+ ++ +SS SLP +P + APP D H+ + ++ G T
Sbjct: 2459 VSSLGHSSTTSASLPFMPFVMGAAAPPHVDSSTMLHHHHHHPHPHHHHHHHPGLRTTGYP 2518
Query: 1133 EAPAST 1138
+PA+T
Sbjct: 2519 SSPATT 2524
Score = 45 (20.9 bits), Expect = 2.1e-36, Sum P(5) = 2.1e-36
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 1808 SIMPEKLPEHLDIPASL----ATPEEKTEGSEKDPDSSFAAQEDPKESVVEA 1855
S+ P KL + D + L +P + S SS ED KE + A
Sbjct: 2058 SVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTA 2109
Score = 42 (19.8 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R R++ S ++ + TE + E +C+A
Sbjct: 1458 YGWG-RWRDILSHGRFKRRMTERDVETICRA 1487
Score = 42 (19.8 bits), Expect = 2.1e-36, Sum P(5) = 2.1e-36
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEE 2175
GP + ++ G PVP G A+ +A EE
Sbjct: 2194 GPGNHLLDSPSLTPGEDGDSPVPTPRSGSAASMAEEE 2230
Score = 42 (19.8 bits), Expect = 2.3e-35, Sum P(5) = 2.3e-35
Identities = 21/102 (20%), Positives = 37/102 (36%)
Query: 1101 PPGFDIP-----IEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNL 1155
PPG ++P + E R V + + + S A + N + +
Sbjct: 1917 PPGLELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGASA 1976
Query: 1156 ADLSSDD-----KTCSVTPAMETAPGFDIPIEKGVEQSGTEI 1192
A LS + C+ A + D P+EK E+S ++
Sbjct: 1977 ASLSRCSTPLLHQQCTSRTASPSPLRPDAPVEKSPEESTVQV 2018
Score = 40 (19.1 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 1532 GDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDI 1569
G++K ++E +C+ + ++++L R + + DG +
Sbjct: 2290 GNRKKLVELEVECMEEPNHLDLDLETRIPVINKVDGTL 2327
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 455 (165.2 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
Identities = 121/401 (30%), Positives = 208/401 (51%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +++ GKL +
Sbjct: 1056 EALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLL 1115
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KLK HRVL FS MT++LD++ED+L ++ Y+Y R+DG +G R ID+FN
Sbjct: 1116 LQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNA 1175
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVIIFD+DWNP D+QA +RAHRIGQ V++ RF
Sbjct: 1176 PGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRF 1235
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEEXXXX 242
T +VEE++ A+ K+ + + + G + S ++ + L+ E K+E
Sbjct: 1236 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGE 1295
Query: 243 XXXXXXXXXXXRSES-------EIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLP 295
+E+ D + D Q E ++++ K+ + + + + + +
Sbjct: 1296 NKEEDSSVIHYDNEAIARLLDRNQDATDDTDVQNMNEYLSSF-KVAQYVVREEDKIEEIE 1354
Query: 296 SRLVT-DDDLKALYEAMKI---YDAPKTGVSPNVGV-KRKGEHLGALDTQHYGRGKRARE 350
++ ++++ Y + Y+ + ++ N+G KR + + D + ++
Sbjct: 1355 REIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEY 1414
Query: 351 VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 391
EE+ +E+F++ + +L+ E +K LP +++
Sbjct: 1415 SVGSEEE--DEDFDERPEGRRQSKRQLRNEK-DKPLPPLLA 1452
Score = 62 (26.9 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
Identities = 24/80 (30%), Positives = 32/80 (40%)
Query: 496 SSQPTTAFVPVAP-GSQSASACPSTPMQP----KGRGRRI---QSGEQVPRRRGKKIGLV 547
+S PT P P S + S C S P P KG G R + + P + +K V
Sbjct: 1582 ASSPTKTS-PTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPEKSSKV 1640
Query: 548 LPAASDDIPSPGPDPKTNEQ 567
+I SP P P E+
Sbjct: 1641 GEKMETEIDSPSPAPSLGER 1660
Score = 56 (24.8 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKG 606
+P PDP + + S + +P+ T + + ++ P P + +PS KG
Sbjct: 1565 MPELMPDPSADSKRSSRASSPTKTSPTTPEASTTNSPCTSKPATPAPSE-KG 1615
Score = 45 (20.9 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
Identities = 31/148 (20%), Positives = 59/148 (39%)
Query: 1790 VLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEK------TEGSEKDPDSSFA 1843
VL +E +++ + D++ +P L I A L E ++G+E P +F
Sbjct: 1882 VLNQLEELLSDM--KADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAFP 1939
Query: 1844 A---QEDPKESVVEAGDQMG-VSLGGATVMEKSSEDLAT-----PPLSLANEEEMIEGFD 1894
P + +G ++ GA + + T PP+ + E+EM+
Sbjct: 1940 PGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITATTNGPPVLVKKEKEMVGALV 1999
Query: 1895 NDPTGISMAVMDSKECAAEAADQMCVSE 1922
+D G+ D KE A + +C+ +
Sbjct: 2000 SDGLGL-----DRKE--PRAGEVICIDD 2020
Score = 45 (20.9 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 16/80 (20%), Positives = 33/80 (41%)
Query: 1304 SPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKC 1363
S +S T+ S + + N P +P + +P G + D +E P + E +
Sbjct: 1580 SRASSPTKTSPTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTENPEEKPEKSSK 1639
Query: 1364 PSDAIVNNLLETPLDIKSIG 1383
+ + + ++P S+G
Sbjct: 1640 VGEKMETEI-DSPSPAPSLG 1658
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 458 (166.3 bits), Expect = 4.1e-37, Sum P(3) = 4.1e-37
Identities = 98/213 (46%), Positives = 136/213 (63%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTLIPK---HY 51
+E+N + G++ + N++MELR CNHPYL + E++ + P +
Sbjct: 1167 LEKNFSFLAKGAGQANVPNLLNTMMELRKCCNHPYLIKGAEEKIMEDFKEVYSPAAVDFH 1226
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPK+KA H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 1227 LQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVR 1286
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 1287 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1346
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 204
RIGQ + V V R T + E ++ A KLG+
Sbjct: 1347 RIGQNKAVKVYRLITRNSYEREMFDRASLKLGL 1379
Score = 63 (27.2 bits), Expect = 4.1e-36, Sum P(4) = 4.1e-36
Identities = 38/152 (25%), Positives = 64/152 (42%)
Query: 1653 EAEIGDRIDEPQVDGFSPRSMSGV--VDEL--VDEAGDHMGVSHS-PV--HVVEREKSEE 1705
E E G+R + + P + SGV D++ V E+ M + + P+ + + R K ++
Sbjct: 2131 EEEAGERELKMETASVRPPTPSGVDEKDDILKVGESESRMEAARTKPLTPNSITR-KQKK 2189
Query: 1706 LGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQP 1765
L S A +E + D D D S+ S S +SG + S C
Sbjct: 2190 LSKRSRREARRESRSDS--DSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSSS-CSS 2246
Query: 1766 --SSSLAPWEAKIDGSSEKDPVSSQSVLEGSK 1795
SSS + + +GS ++ + SV+ G K
Sbjct: 2247 GSSSSSSSSSSSSEGSDSEEAPKNASVVPGVK 2278
Score = 57 (25.1 bits), Expect = 6.1e-37, Sum P(4) = 6.1e-37
Identities = 28/134 (20%), Positives = 47/134 (35%)
Query: 898 RKTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETA 957
RK + RR +++ S DGS+ + S + SR S S + S ++
Sbjct: 2185 RKQKKLSKRSRREARRESRSDSDSDGSSS-----SSSSSSSSRSSSSSSSSSRSGSSSSS 2239
Query: 958 DVNDVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDD--KT 1015
+ + S + SS + G S K+ VA ++ D +
Sbjct: 2240 SSSSCSSGSSS--SSSSSSSSSEGSDSEEAPKNASVVPGVKGFDEDSVASLNTTQDDMQD 2297
Query: 1016 CSVTPTVETPPPGF 1029
VT + PP F
Sbjct: 2298 SHVTNGISNPPHPF 2311
Score = 55 (24.4 bits), Expect = 4.1e-37, Sum P(3) = 4.1e-37
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 1258 PGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHS 1295
PG SED E P K T GP S KAD + S
Sbjct: 2896 PGQ-SEDKDSDEGEEPDEKKDTSGPEGSAKADSSSSES 2932
Score = 54 (24.1 bits), Expect = 4.1e-37, Sum P(3) = 4.1e-37
Identities = 24/136 (17%), Positives = 53/136 (38%)
Query: 1031 SPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKS 1090
SP N EL K + G+ L +T +++P + ++I +
Sbjct: 2114 SPLLNQTEL---KEEPLSEGEEE-AGERELKMETASVRPPTPSGVDEKDDILKVGESESR 2169
Query: 1091 LPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTS 1150
+ P +K +++SR + E + + S + +S+ + + +++S
Sbjct: 2170 MEAARTKPLTPNSITRKQKKLSKRSRREARRESRSDSDSDGSSSSSSSSSSSRSSSSSSS 2229
Query: 1151 SFVNLADLSSDDKTCS 1166
S + + SS +CS
Sbjct: 2230 SSRSGSSSSSSSSSCS 2245
Score = 54 (24.1 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 19/87 (21%), Positives = 32/87 (36%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAE 2233
E + SD + GSS S S + + G+ + ++S G S +
Sbjct: 2197 EARRESRSDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSS 2256
Query: 2234 DKTENEIEEDPVVNSVAVEESKGSEAD 2260
+E E+ N+ V KG + D
Sbjct: 2257 SSSEGSDSEEAPKNASVVPGVKGFDED 2283
Score = 54 (24.1 bits), Expect = 6.1e-35, Sum P(5) = 6.1e-35
Identities = 37/166 (22%), Positives = 65/166 (39%)
Query: 1703 SEEL-GLPSLSSATKEEKIDGSLDKDPDSNLVV--------LEDSKGSIGDQMDCCQSG- 1752
S+E+ G+ L +++K G + K NL + + SK + +Q SG
Sbjct: 2783 SQEVAGVAPLGDEEEKKKSAGDIPKSSALNLSLDGKAERTEAQSSKATTSNQTSASASGH 2842
Query: 1753 --VVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQ---SVLEGSKETVAEAGDQMDI 1807
+ P LS P L P + +++ ++Q ++ + E +A Q +
Sbjct: 2843 PLALNPLLLSSMLYPGMLLTPG-LNLPVANQPQAANTQPTPALQPAASEAMAPQPGQSED 2901
Query: 1808 SIMPEKLPEHLDIPASLATPE--EKTEGSEKDPDSSFAAQEDPKES 1851
E E D + PE K + S + DSS ++ ED S
Sbjct: 2902 KDSDEG--EEPDEKKDTSGPEGSAKADSSSSESDSSSSSSEDSDSS 2945
Score = 53 (23.7 bits), Expect = 1.8e-36, Sum P(5) = 1.8e-36
Identities = 26/117 (22%), Positives = 47/117 (40%)
Query: 657 SGGVTPRRRGKRQALGSPP--ISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQ 714
+G P+R+ Q L P ++DV A + + LQ ++ + + + K D S
Sbjct: 2550 AGEDAPKRKELDQWLKEHPGFVADVGAFIPTANKLQFQDGRPKQKRHRCRNPNKIDINS- 2608
Query: 715 ELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTP 771
L+ + +VQ + + G P + R +Q N +P + SG P
Sbjct: 2609 -LTGEERVQIINRRNARKIGGAFAPPLKDLSRFLQENPEYGVPPEWADVVKQSGYLP 2664
Score = 53 (23.7 bits), Expect = 3.8e-35, Sum P(5) = 3.8e-35
Identities = 39/185 (21%), Positives = 64/185 (34%)
Query: 556 PSPGPDPKTNEQPQSESLNP------------SGGESTATDGNVSSIPTAPVPDSVSPSA 603
P+P P P + Q + S +P S GE A + + + TA V +PS
Sbjct: 2096 PTPLPTPLQHIQMKEASASPLLNQTELKEEPLSEGEEEAGERELK-METASVRPP-TPSG 2153
Query: 604 VKGQSGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRK-TQSGGVTP 662
V + + + + + + L + + +SR + S G +
Sbjct: 2154 VDEKDDILKVGESESRMEAARTKPLTPNSITRKQKKLSKRSRREARRESRSDSDSDGSSS 2213
Query: 663 RRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQV 722
+ S S S S S+ S +SG S S S + + S+E V
Sbjct: 2214 SSSSSSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSEGSDSEEAPKNASV 2273
Query: 723 QPCGV 727
P GV
Sbjct: 2274 VP-GV 2277
Score = 52 (23.4 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 545 GLVLPAASDDIPSPGPDPKTNEQPQ-SESLNPSGGESTATDGNVSSIPTAPVPDSVSPSA 603
GL LP A+ + P QP SE++ P G+S D + P S +
Sbjct: 2864 GLNLPVANQP-QAANTQPTPALQPAASEAMAPQPGQSEDKDSDEGEEPDEKKDTSGPEGS 2922
Query: 604 VKGQSGTIDPSSA 616
K S + + S+
Sbjct: 2923 AKADSSSSESDSS 2935
Score = 52 (23.4 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 22/100 (22%), Positives = 38/100 (38%)
Query: 2123 SEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSD 2182
S+ +S S+ S + SS ++ G S + G +S ++ +E SD
Sbjct: 2204 SDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSEGSD 2263
Query: 2183 KEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGM 2222
E + S + P K F+ D +L T + M
Sbjct: 2264 SEEAPKNASVV----PGVKGFDE----DSVASLNTTQDDM 2295
Score = 51 (23.0 bits), Expect = 6.1e-35, Sum P(5) = 6.1e-35
Identities = 22/94 (23%), Positives = 38/94 (40%)
Query: 652 SRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDA 711
+RK + RR +R++ SD S G S S+ S + S S S S +
Sbjct: 2184 TRKQKKLSKRSRREARRESRSD---SD-SDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSS 2239
Query: 712 LSQELSNKIQVQPCGVATSADVAGPDQKPAEQSV 745
S S+ ++S++ + ++ P SV
Sbjct: 2240 SSSSCSSGSSSSSSSSSSSSEGSDSEEAPKNASV 2273
Score = 50 (22.7 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 292 PPLPSRLVTDDDLKALYEAMKIYDAPKTG-VSPNVGVKRKGEHLGALDTQHYGRGKRA 348
PP PS + DD+ + E+ +A +T ++PN + RK + L + R R+
Sbjct: 2148 PPTPSGVDEKDDILKVGESESRMEAARTKPLTPN-SITRKQKKLSKRSRREARRESRS 2204
Score = 49 (22.3 bits), Expect = 6.1e-37, Sum P(4) = 6.1e-37
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 1050 GDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETA---P----- 1101
GD S L+ +A + E ++ N ++S L + P L ++ P
Sbjct: 2803 GDIPKSSALNLSLDGKAERTEAQSSKATTSNQTSASASGHPLALNPLLLSSMLYPGMLLT 2862
Query: 1102 PGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
PG ++P+ + + Q P ++ P +SEA A ++K
Sbjct: 2863 PGLNLPVANQPQAANTQPTPALQ----PAASEAMAPQPGQSEDK 2902
Score = 49 (22.3 bits), Expect = 4.1e-36, Sum P(4) = 4.1e-36
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 1611 GADNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRID 1661
G D +G V PE+K KDD+ + + LV+ D A E G +D
Sbjct: 1781 GNDFIDGDVDDPEYKPAPALMKDDMEDDASSPGDLVITD-AGEG--GSMLD 1828
Score = 49 (22.3 bits), Expect = 4.8e-35, Sum P(5) = 4.8e-35
Identities = 25/106 (23%), Positives = 42/106 (39%)
Query: 758 ATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNI 817
++ SSS S S S + +S + S +SSS G A N V +
Sbjct: 2220 SSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSEGSDSEEAPKNASVVP--GV 2277
Query: 818 QSFEEKACTNASKSKATLPALDSITEPYTGSTNTEGISNTIHHVPG 863
+ F+E + + + ++ D + + + T GISN H G
Sbjct: 2278 KGFDEDSVASLNTTQ------DDMQDSHV----TNGISNPPHPFQG 2313
Score = 48 (22.0 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 32/168 (19%), Positives = 69/168 (41%)
Query: 1021 TVETPPPGFNSPNENPGELTGTKNDASVRGDHT-PVSGHTLASKTEALKPENKAQAGRIE 1079
T PP + +E L ++++ + T P++ +++ K + L ++ +A R E
Sbjct: 2143 TASVRPPTPSGVDEKDDILKVGESESRMEAARTKPLTPNSITRKQKKLSKRSRREARR-E 2201
Query: 1080 NIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTE 1139
+ ++S D S + + + S + ++ G + SS + +S+E
Sbjct: 2202 SRSDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSS-SSSSSSSSE 2260
Query: 1140 AFEQEKVTNTSSFV---------NLADLSS--DDKTCS-VTPAMETAP 1175
+ E+ +S V ++A L++ DD S VT + P
Sbjct: 2261 GSDSEEAPKNASVVPGVKGFDEDSVASLNTTQDDMQDSHVTNGISNPP 2308
Score = 47 (21.6 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 26/130 (20%), Positives = 44/130 (33%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSS 795
P+ +Q +S + + DS S S S+ + S + +S + S +SS
Sbjct: 2180 PNSITRKQKKLSKRSRREARRESRSDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSS 2239
Query: 796 SKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYTGSTNTEGIS 855
S S + + S E A K+ + +P + E S NT
Sbjct: 2240 SSSS-----CSSGSSSSSSSSSSSSEGSDSEEAPKNASVVPGVKGFDEDSVASLNTTQDD 2294
Query: 856 NTIHHVPGAV 865
HV +
Sbjct: 2295 MQDSHVTNGI 2304
Score = 47 (21.6 bits), Expect = 5.0e-34, Sum P(5) = 5.0e-34
Identities = 24/127 (18%), Positives = 57/127 (44%)
Query: 1112 NEQSRNQNNPEV-KGEETPVSSEAPAS-TEAFEQEKVTN--TSSFVNLADLSSDDKTCS- 1166
+E+ + ++ ++ K +S + A TEA + T+ TS+ + L+ + S
Sbjct: 2794 DEEEKKKSAGDIPKSSALNLSLDGKAERTEAQSSKATTSNQTSASASGHPLALNPLLLSS 2853
Query: 1167 -VTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDS 1225
+ P M PG ++P+ + + T+ ++ P EA+ + ++ +G+
Sbjct: 2854 MLYPGMLLTPGLNLPVANQPQAANTQPTPALQ----PAASEAMAPQPGQSEDKDSDEGEE 2909
Query: 1226 VEKLEDT 1232
++ +DT
Sbjct: 2910 PDEKKDT 2916
Score = 45 (20.9 bits), Expect = 8.3e-36, Sum P(4) = 8.3e-36
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 1112 NEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAM 1171
+ SR+ ++ SS + +S + +++SS +D K SV P +
Sbjct: 2218 SSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSEGSDSEEAPKNASVVPGV 2277
Query: 1172 ETAPGFD 1178
+ GFD
Sbjct: 2278 K---GFD 2281
Score = 45 (20.9 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 20/90 (22%), Positives = 40/90 (44%)
Query: 1695 VHVVEREKSEELG---LPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQM-DCCQ 1750
V ++ R + ++G P L ++ + + P+ VV + G + + M D
Sbjct: 2615 VQIINRRNARKIGGAFAPPLKDLSRFLQENPEYGVPPEWADVVKQS--GYLPESMFDRIL 2672
Query: 1751 SGVVVPENLSDFCQPSSSLAPWEAKIDGSS 1780
+G +VPE +S + + P A + G+S
Sbjct: 2673 TGPIVPEEVSRRGRRPKNAMPKAAMVTGAS 2702
Score = 43 (20.2 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 504 VPVAPGSQSASACPSTPMQPKG-RGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDP 562
+PVA Q+A+ P+ +QP Q G+ + + G P D P
Sbjct: 2867 LPVANQPQAANTQPTPALQPAASEAMAPQPGQSEDKDSDE--GEE-PDEKKDTSGPEGSA 2923
Query: 563 KTNEQP-QSESLNPSGGESTATD 584
K + +S+S + S +S ++D
Sbjct: 2924 KADSSSSESDSSSSSSEDSDSSD 2946
Score = 41 (19.5 bits), Expect = 4.1e-36, Sum P(4) = 4.1e-36
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 2116 GFSKPVGSEKESIASAVPL---DESKGPDAEVSSQTAI 2150
G S +G+ + +A PL +E K ++ +A+
Sbjct: 2774 GMSSLIGNPSQEVAGVAPLGDEEEKKKSAGDIPKSSAL 2811
Score = 41 (19.5 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 29/118 (24%), Positives = 43/118 (36%)
Query: 461 AMTGQSTSASAS-LPXXXXXXXXXXXAQHVMV---GI-AP-SSQPTTAFVPVAPGSQSAS 514
A T TSASAS P M+ G+ P ++QP A P Q A+
Sbjct: 2829 ATTSNQTSASASGHPLALNPLLLSSMLYPGMLLTPGLNLPVANQPQAANTQPTPALQPAA 2888
Query: 515 ACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSES 572
+ P + + GE+ P + G A +D S D ++ S+S
Sbjct: 2889 SEAMAPQPGQSEDKDSDEGEE-PDEKKDTSGPEGSAKADSSSSES-DSSSSSSEDSDS 2944
Score = 41 (19.5 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 24/131 (18%), Positives = 46/131 (35%)
Query: 2079 EANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESK 2138
E+ + D++G + + SSS S S S +S+ S+
Sbjct: 2201 ESRSDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSE 2260
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEP 2198
G D+E + + A GV + D AS +++ + + + +
Sbjct: 2261 GSDSEEAPKNASVVPGVKGF----DEDSVASLNTTQDDMQDSHVTNGISNPPHPFQGGYM 2316
Query: 2199 EAKAFEPMDVV 2209
A ++ P D V
Sbjct: 2317 LAASYWPKDRV 2327
Score = 41 (19.5 bits), Expect = 2.9e-34, Sum P(4) = 2.9e-34
Identities = 37/215 (17%), Positives = 82/215 (38%)
Query: 900 TPTTGEAPRRRGK-KQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETAD 958
TPT P + + K+ S + + + + + L++ + +T S+R +
Sbjct: 2095 TPTPLPTPLQHIQMKEASASPLLNQTELKEEPLSEGEEEAGERELKMETASVRPPTPSG- 2153
Query: 959 VNDVARVMKEIFSETCSSKAKTGDSSLNE--GKDXXXXXXXXXXXXXEVAKKQSSDDKTC 1016
V++ ++K SE+ A+T + N K E SD +
Sbjct: 2154 VDEKDDILKVGESESRMEAARTKPLTPNSITRKQKKLSKRSRREARRESRSDSDSDGSSS 2213
Query: 1017 SVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALK--PENKAQ 1074
S + + + +S + G + + + + G + S + +S+ + P+N +
Sbjct: 2214 SSSSSSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSEGSDSEEAPKNASV 2273
Query: 1075 AGRI-----ENIA--NSSPDDKSLPMVPNLETAPP 1102
+ +++A N++ DD V N + PP
Sbjct: 2274 VPGVKGFDEDSVASLNTTQDDMQDSHVTNGISNPP 2308
Score = 41 (19.5 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 33/175 (18%), Positives = 64/175 (36%)
Query: 1163 KTCSVTPAMETAPGFDIPIEKGVEQSGT-EIDAKVKWKNTPLPGEAIVAGIEVFKPENKT 1221
K S +P + + P+ +G E++G E+ + P P +G++ K +
Sbjct: 2109 KEASASPLLNQTELKEEPLSEGEEEAGERELKMETASVRPPTP-----SGVDE-KDDILK 2162
Query: 1222 DGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEG 1281
G+S ++E + K L S + + S+ ++ S+
Sbjct: 2163 VGESESRMEA-----ARTKPLTPNSITRKQKKLSKRSRREARRESRSDSDSDGSSSSSSS 2217
Query: 1282 PSVSMKADDVADHSRE--TPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSAS 1334
S S + + SR + S S +SG+ S+ S + P +AS
Sbjct: 2218 SSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSEGSDSEEAPKNAS 2272
Score = 41 (19.5 bits), Expect = 2.1e-33, Sum P(5) = 2.1e-33
Identities = 29/146 (19%), Positives = 51/146 (34%)
Query: 1004 EVAKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
E KK+S+ D S + + ++ T + AS G ++ L+S
Sbjct: 2795 EEEKKKSAGDIPKSSALNLSLDGKAERTEAQSSKATTSNQTSASASGHPLALNPLLLSSM 2854
Query: 1064 TEA---LKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGF--DIPIEKHNE--QSR 1116
L P AN+ P P PG D ++ E + +
Sbjct: 2855 LYPGMLLTPGLNLPVANQPQAANTQPTPALQPAASEAMAPQPGQSEDKDSDEGEEPDEKK 2914
Query: 1117 NQNNPEVKGEETPVSSEAPASTEAFE 1142
+ + PE + SSE+ +S+ + E
Sbjct: 2915 DTSGPEGSAKADSSSSESDSSSSSSE 2940
Score = 40 (19.1 bits), Expect = 9.5e-34, Sum P(4) = 9.5e-34
Identities = 27/129 (20%), Positives = 52/129 (40%)
Query: 1691 SHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGD---QMD 1747
S SP+ K E L + +E K++ + + P + V +D +G+ +M+
Sbjct: 2112 SASPLLNQTELKEEPLSEGEEEAGERELKMETASVRPPTPSGVDEKDDILKVGESESRME 2171
Query: 1748 CCQSGVVVPENLSDFCQPSSSLAPWEAK--------IDGSSEKDPVSSQSVLEGSKETVA 1799
++ + P +++ + S + EA+ DGSS SS S S + +
Sbjct: 2172 AARTKPLTPNSITRKQKKLSKRSRREARRESRSDSDSDGSSSSSSSSSSSRSSSSSSSSS 2231
Query: 1800 EAGDQMDIS 1808
+G S
Sbjct: 2232 RSGSSSSSS 2240
Score = 39 (18.8 bits), Expect = 4.8e-35, Sum P(5) = 4.8e-35
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1117 NQNNPEVKGEETP 1129
N+N P V E+TP
Sbjct: 2495 NRNRPPVMPEQTP 2507
Score = 38 (18.4 bits), Expect = 2.6e-33, Sum P(5) = 2.6e-33
Identities = 32/166 (19%), Positives = 62/166 (37%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
Q+ A A +GD ++ + G P+S + ++ +D + S + + G
Sbjct: 2784 QEVAGVAPLGDEEEKKKSAGDIPKSSA--LNLSLDGKAERTEAQSSKATTSNQTSASASG 2841
Query: 1708 LP-SLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQ---SGVVVPE-NLSDF 1762
P +L+ + + P NL V + + Q S + P+ S+
Sbjct: 2842 HPLALNPLLLSSMLYPGMLLTPGLNLPVANQPQAANTQPTPALQPAASEAMAPQPGQSED 2901
Query: 1763 CQPSSSLAPWEAKI----DGSSEKDPVSSQSVLEGSKETVAEAGDQ 1804
P E K +GS++ D SS+S S +++ D+
Sbjct: 2902 KDSDEGEEPDEKKDTSGPEGSAKADSSSSESDSSSSSSEDSDSSDE 2947
Score = 37 (18.1 bits), Expect = 3.8e-35, Sum P(5) = 3.8e-35
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 911 GKKQGSGPSIPDGSAVFDAK 930
G SG S P G + FD +
Sbjct: 2516 GMSGPSGLSTPQGPSTFDTE 2535
Score = 37 (18.1 bits), Expect = 3.3e-33, Sum P(5) = 3.3e-33
Identities = 37/198 (18%), Positives = 70/198 (35%)
Query: 1688 MGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVL---EDSKGSIGD 1744
MG+ H P ++ G+ L + + G+ ++ + + L E+ K S GD
Sbjct: 2746 MGLPHDPSNMAAMFPMMLSGMTGLPNLLGMSSLIGNPSQEV-AGVAPLGDEEEKKKSAGD 2804
Query: 1745 QMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSK---ETVAEA 1801
+ + + ++ + SS A + S+ P++ +L S +
Sbjct: 2805 IPKSSALNLSL-DGKAERTEAQSSKATTSNQTSASASGHPLALNPLLLSSMLYPGMLLTP 2863
Query: 1802 GDQMDISIMPEKLPEH----LDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGD 1857
G + ++ P+ L AS A + + +KD D E S E
Sbjct: 2864 GLNLPVANQPQAANTQPTPALQPAASEAMAPQPGQSEDKDSDEGEEPDEKKDTSGPEGSA 2923
Query: 1858 QMGVSLGGATVMEKSSED 1875
+ S + SSED
Sbjct: 2924 KADSSSSESDSSSSSSED 2941
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 453 (164.5 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 99/217 (45%), Positives = 136/217 (62%)
Query: 12 GNSKGR---SVHNSVMELRNICNHPYLSQLHAEEV---DTLIPKHYLPPIVRLCGKLEML 65
G++ GR S+ N V+EL+ + NHPYL AE+ + + L I+ GK+ +L
Sbjct: 650 GHTDGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLL 709
Query: 66 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 125
D+LL +LK HRVL FS M R+L+++ +Y++ + Y Y RLDG R ID FN
Sbjct: 710 DKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAP 769
Query: 126 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 185
DSP F+FLLS RAGG+G+NL ADTVIIFD+DWNPQ DLQA ARAHRIGQK V V RF
Sbjct: 770 DSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFL 829
Query: 186 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 222
+ TVEE + A K+ + I+ G + + ++++
Sbjct: 830 SKDTVEEDILERARRKMILEYAIISLGVTEKSKNSKN 866
Score = 47 (21.6 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 27/150 (18%), Positives = 53/150 (35%)
Query: 1008 KQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEA- 1066
K+ + K + + T +T G S + K + + RGD T G + E
Sbjct: 1214 KRKYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKKKEEETNRGDETSPEGTVGEDEVEEE 1273
Query: 1067 ---LKPENKA---QAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNN 1120
+P +A +G+ + ++ + + TA D ++ + + +
Sbjct: 1274 PRQAEPPKRALRSNSGKAASNKRTTRNSMKTHSAMDTLTAVAALDAELDNMSNEKAKEEV 1333
Query: 1121 PEVKGEETPVSSEAPASTEAFEQEKVTNTS 1150
VK E +E + E E+ T S
Sbjct: 1334 DHVKSENGESVNEPNTEDLSLETEENTTVS 1363
Score = 46 (21.3 bits), Expect = 5.6e-37, Sum P(2) = 5.6e-37
Identities = 24/142 (16%), Positives = 56/142 (39%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQD 710
Q K + P + RQ IS+ +K + E N G S ++G +D
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKKKEEETNRGD-ETSPEGTVG-ED 1268
Query: 711 ALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGST 770
+ +E + + + +++ A +++ S++ + + A D+ +
Sbjct: 1269 EVEEE-PRQAEPPKRALRSNSGKAASNKRTTRNSMKTHSAMDTLTAVAALDAELDNMSNE 1327
Query: 771 PAQVPSMDLGNVASDTKEVLSE 792
A+ ++ +V S+ E ++E
Sbjct: 1328 KAKE---EVDHVKSENGESVNE 1346
Score = 45 (20.9 bits), Expect = 2.5e-35, Sum P(3) = 2.5e-35
Identities = 14/72 (19%), Positives = 27/72 (37%)
Query: 2187 GSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKTEN-EIEEDPV 2245
G + S + K MD + AL+ + M + K+EN E +P
Sbjct: 1289 GKAASNKRTTRNSMKTHSAMDTLTAVAALDAELDNMSNEKAKEEVDHVKSENGESVNEPN 1348
Query: 2246 VNSVAVEESKGS 2257
+++E + +
Sbjct: 1349 TEDLSLETEENT 1360
Score = 38 (18.4 bits), Expect = 3.9e-36, Sum P(2) = 3.9e-36
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 602 SAVKGQSGTIDPSSAVAALNSELN 625
+++K S +D +AVAAL++EL+
Sbjct: 1300 NSMKTHSA-MDTLTAVAALDAELD 1322
Score = 38 (18.4 bits), Expect = 2.5e-35, Sum P(3) = 2.5e-35
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1992 QEEEKTELSCEKQPIGSSVDDE-SKGP-EVEP 2021
++EE+T E P G+ +DE + P + EP
Sbjct: 1248 KKEEETNRGDETSPEGTVGEDEVEEEPRQAEP 1279
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 479 (173.7 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 109/234 (46%), Positives = 148/234 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQ-------LHAEEVDTLIPKHY-LPPIVRLCGKLE 63
G++ ++ N++MELR CNHPYL + E +IP+ + L +VR GKL
Sbjct: 1077 GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLV 1136
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 1137 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1196
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R
Sbjct: 1197 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 1256
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 233
T + E ++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1257 LITRNSYEREMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1309
Score = 52 (23.4 bits), Expect = 1.3e-36, Sum P(5) = 1.3e-36
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 1234 DDHSLVKELIHRSPDH-SDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVA 1292
DD ++ E HR D+ SD+V G ED PL+ P EG + M ++++
Sbjct: 1664 DDKAIAAE--HRVLDNFSDLVEGIDFDKDCEDPEYKPLQGPPKDPDDEGDPLMMMDEEIS 1721
Score = 51 (23.0 bits), Expect = 1.3e-36, Sum P(5) = 1.3e-36
Identities = 28/139 (20%), Positives = 56/139 (40%)
Query: 1759 LSDFCQPSSSLAPWEAKID-GSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEH 1817
L D S L P + +I SS+ P+S +SV E ++ ++D+S KL
Sbjct: 2026 LEDEVVARSRLTPQDYEIRVASSDTAPLS-RSVPPVKLEDDDDSDSELDLS----KLSPS 2080
Query: 1818 LDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLA 1877
+S ++ ++ SE + + A + + + + +++ + E +
Sbjct: 2081 SSSSSSSSSSSSSSDESEDEKEEKLTADRS-RPKLYDEESLLSLTMSQDGFPNEDGEQM- 2138
Query: 1878 TPPLSLANEEEMIEGFDND 1896
TP L L E + + D
Sbjct: 2139 TPELLLLQERQRASEWPKD 2157
Score = 43 (20.2 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 1078 IENIANSSPDDKSLPMVPNL---ETAPPGFDIPIEKHNEQSR---NQNNPEVKGEETPVS 1131
+ ++ +SS SLP +P + APP D H+ + ++ G T
Sbjct: 2457 VSSLGHSSATSASLPFMPFVMGGAAAPPHVDSSTMLHHHHHHPHPHHHHHHHPGLRTTGY 2516
Query: 1132 SEAPAST 1138
+PA+T
Sbjct: 2517 PSSPATT 2523
Score = 43 (20.2 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 2097 PQDLGLPLSSSDVEEEKIEGFSKPV 2121
P D G PL D E I+G PV
Sbjct: 1706 PDDEGDPLMMMDEEISVIDGDEAPV 1730
Score = 43 (20.2 bits), Expect = 3.0e-34, Sum P(5) = 3.0e-34
Identities = 38/185 (20%), Positives = 65/185 (35%)
Query: 1101 PPGFDIP-----IEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNL 1155
PPG ++P + E R V + + + S A + N + +
Sbjct: 1915 PPGLELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGASA 1974
Query: 1156 ADLSSDD-----KTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVA 1210
A LS + C+ A + D+P EK E++ ++ + + L E +
Sbjct: 1975 ASLSRCSTPLLHQQCTSRTASPSPLRPDVPAEKSPEENAVQVPS-LDSLTLKLEDEVVAR 2033
Query: 1211 G--------IEVFKPENKTDGDSVE--KLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGN 1260
I V + SV KLED DD +L SP S + +
Sbjct: 2034 SRLTPQDYEIRVASSDTAPLSRSVPPVKLEDD-DDSDSELDLSKLSPSSSSSSSSSSSSS 2092
Query: 1261 TSEDS 1265
+S++S
Sbjct: 2093 SSDES 2097
Score = 42 (19.8 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R R++ S ++ + TE + E +C+A
Sbjct: 1456 YGWG-RWRDILSHGRFKRRMTERDVETICRA 1485
Score = 39 (18.8 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 1532 GDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDI 1569
G++K ++E +C+ + ++++L R + + DG +
Sbjct: 2288 GNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTL 2325
Score = 38 (18.4 bits), Expect = 1.3e-36, Sum P(5) = 1.3e-36
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 2216 ENTSEGMGGPSPPLVIAEDKTENEIEEDPV 2245
E T+ G+ GP L+ + T E + PV
Sbjct: 2184 EMTTGGILGPGNHLLDSPSLTPGEYGDSPV 2213
Score = 37 (18.1 bits), Expect = 3.6e-35, Sum P(5) = 3.6e-35
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 1636 SSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPV 1695
SS + SS +D+ E DR D S S++ D +E G+ M + +
Sbjct: 2086 SSSSSSSSSDESEDEKEEKLTADRSRPKLYDEESLLSLTMSQDGFPNEDGEQM--TPELL 2143
Query: 1696 HVVEREKSEE 1705
+ ER+++ E
Sbjct: 2144 LLQERQRASE 2153
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 443 (161.0 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 100/226 (44%), Positives = 140/226 (61%)
Query: 8 LGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 67
+G+ GN+ + N M+LR CNHPYL AEE +H ++ GK+ +LD+
Sbjct: 534 VGAKGNTGRVRLLNICMQLRKACNHPYLFD-GAEEEPYTTGEH----LIDNSGKMALLDK 588
Query: 68 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127
LL KLK RVL FS M+R+LD++EDY+ ++ Y+Y R+DG T R I+ +N+ S
Sbjct: 589 LLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGS 648
Query: 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187
F FLL+ RAGG+G+ L AD VI+FD+DWNPQ+DLQAQ RAHRIGQ + V V RF T
Sbjct: 649 DLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTE 708
Query: 188 QTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESLLR 232
++EE++ AE KL + I G + N +A+ E L ++LR
Sbjct: 709 NSMEEKMVEKAEMKLQLDALVIQQGRLVEANKNAKP--EELLAMLR 752
Score = 55 (24.4 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 1056 SGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQS 1115
SG T ASK + P NK G+ ++ S P K P + ++ P P K + +
Sbjct: 1122 SGVT-ASKAKTESP-NKT-LGKRKDAPPSKPPAK--PSKASAKSKPA----PKSKTSTTT 1172
Query: 1116 RNQNNPEVKGEETPVSSEAPASTEAFEQEKV 1146
+ +G++ PV E P E E+E+V
Sbjct: 1173 K-PTTTNGRGKKKPVEEEEPMEEEEEEEEEV 1202
Score = 52 (23.4 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 495 PSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVP 537
P ++P+ A P +S ++ + P GRG++ E+ P
Sbjct: 1149 PPAKPSKASAKSKPAPKSKTSTTTKPTTTNGRGKKKPVEEEEP 1191
Score = 45 (20.9 bits), Expect = 5.5e-36, Sum P(2) = 5.5e-36
Identities = 25/93 (26%), Positives = 36/93 (38%)
Query: 2168 ASFLAAEEEKNECSDKEPVGSSVSQIESKEPE--AKAF---EPMDVVDGAVALENTSEGM 2222
AS + A + K E +K +G SK P +KA +P + + T+
Sbjct: 1121 ASGVTASKAKTESPNKT-LGKRKDAPPSKPPAKPSKASAKSKPAPKSKTSTTTKPTTTNG 1179
Query: 2223 GGPSPPLVIAEDKTENEIEEDPVVNSVAVEESK 2255
G P+ E E E EE+ V EE K
Sbjct: 1180 RGKKKPVEEEEPMEEEEEEEEEVEEEEEEEEVK 1212
Score = 42 (19.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 343 GRGKR--AREVRSYEEQWTEEEFEKMCQAESSDSPKL 377
GRGK+ E EE+ EEE E++ + E + K+
Sbjct: 1179 GRGKKKPVEEEEPMEEE--EEEEEEVEEEEEEEEVKV 1213
Score = 42 (19.8 bits), Expect = 4.1e-34, Sum P(3) = 4.1e-34
Identities = 20/80 (25%), Positives = 30/80 (37%)
Query: 1059 TLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDI--PIEKHNE-QS 1115
TL + +A P +K A + A S P KS T G P+E+ +
Sbjct: 1137 TLGKRKDA--PPSKPPAKPSKASAKSKPAPKSKTSTTTKPTTTNGRGKKKPVEEEEPMEE 1194
Query: 1116 RNQNNPEVKGEETPVSSEAP 1135
+ EV+ EE + P
Sbjct: 1195 EEEEEEEVEEEEEEEEVKVP 1214
Score = 37 (18.1 bits), Expect = 4.1e-34, Sum P(3) = 4.1e-34
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 893 VKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKS 939
+K H + EA +R+ +K+ + S V +K S NK+
Sbjct: 1094 IKEHQEEVEAAKEAEKRKKEKEKLKLA---ASGVTASKAKTESPNKT 1137
Score = 37 (18.1 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 2103 PLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIE 2151
P S + K SKP K S + +G V + +E
Sbjct: 1145 PPSKPPAKPSKASAKSKPAPKSKTSTTTKPTTTNGRGKKKPVEEEEPME 1193
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 448 (162.8 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + + L ++R GKL +LD+L
Sbjct: 745 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGQEILLSLIRSSGKLILLDKL 801
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 802 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 861
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 862 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 921
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 922 TVEEEIIERAKKKM 935
Score = 55 (24.4 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
Identities = 47/191 (24%), Positives = 77/191 (40%)
Query: 1577 GPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPG-ADNP-EGGVIVPEHKSENMGEKDD 1634
G A L K + + KA + DEHG P +DNP E G + + ++ +K
Sbjct: 1336 GGEEAKLKKRKPRVKKENKAPRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQ 1395
Query: 1635 ISSEHAFGSSLVL---QDKASEAE---IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHM 1688
E+ + +DK + E D+ ++P+ G +S S + H+
Sbjct: 1396 KKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPK--GGDAKSSS---KSKRSQGPVHI 1450
Query: 1689 GVSHSPVHVVEREKSEELGLPSLSSATKE----EKIDGSLDKDPDSNLVV---LEDSKG- 1740
PV + E E ++L + S + +K LDK PD L V LE ++
Sbjct: 1451 TAGSEPVPIGEDE-DDDLDQETFSICKERMRPVKKALKQLDK-PDKGLNVQEQLEHTRNC 1508
Query: 1741 --SIGDQMDCC 1749
IGD++ C
Sbjct: 1509 LLKIGDRIAEC 1519
Score = 51 (23.0 bits), Expect = 4.0e-35, Sum P(4) = 4.0e-35
Identities = 23/104 (22%), Positives = 44/104 (42%)
Query: 2111 EEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGG------GVVSIPVPEEA 2164
+EK K +KE S ++ KG DA+ SS++ G G +P+ E+
Sbjct: 1404 KEKQMSSRKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDE 1463
Query: 2165 DGPASFLAAEEEKNECSDK-EPVGSSVSQIESKEPEAKAFEPMD 2207
D +E + C ++ PV ++ Q++ + E ++
Sbjct: 1464 DDDLD----QETFSICKERMRPVKKALKQLDKPDKGLNVQEQLE 1503
Score = 47 (21.6 bits), Expect = 4.0e-35, Sum P(4) = 4.0e-35
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ ++E + D + V E E+ +EL
Sbjct: 1008 ENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELE 1067
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1068 EIYMLPRIRSSTKKAQTNDS-DSDTES 1093
Score = 46 (21.3 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 31/148 (20%), Positives = 52/148 (35%)
Query: 1029 FNSP--NENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSP 1086
F+SP ++NP E K+D + +P+ K + K ENK + +
Sbjct: 1366 FSSPRHSDNPSEEGEVKDDGL---EKSPM-------KKKQKKKENKENKEKQMSSRKDKE 1415
Query: 1087 DDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAP--ASTEAFEQE 1144
DK + + P G D +++S+ + E P+ + E F
Sbjct: 1416 GDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDEDDDLDQETFSIC 1475
Query: 1145 KVTNTSSFVNLADLSSDDKTCSVTPAME 1172
K L L DK +V +E
Sbjct: 1476 KERMRPVKKALKQLDKPDKGLNVQEQLE 1503
Score = 45 (20.9 bits), Expect = 4.0e-35, Sum P(4) = 4.0e-35
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1815 PEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P H D P+ E K +G EK P +++ KE+
Sbjct: 1369 PRHSDNPSEEG--EVKDDGLEKSPMKKKQKKKENKEN 1403
Score = 40 (19.1 bits), Expect = 5.1e-35, Sum P(3) = 5.1e-35
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 362 EFEKMCQAES-SDSPKLKEEGLEKS 385
EF +++ S+ ++K++GLEKS
Sbjct: 1365 EFSSPRHSDNPSEEGEVKDDGLEKS 1389
Score = 37 (18.1 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 1038 ELTGTKNDASVRGDHTPVSGH 1058
E +G+ D+ + HTP + H
Sbjct: 1585 EASGSSRDSLMSQSHTPHNLH 1605
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 459 (166.6 bits), Expect = 5.7e-37, Sum P(3) = 5.7e-37
Identities = 97/228 (42%), Positives = 143/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 901 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLML 960
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 961 LQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1020
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1021 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1080
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1081 VTRASVEERITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1126
Score = 56 (24.8 bits), Expect = 5.7e-37, Sum P(3) = 5.7e-37
Identities = 21/85 (24%), Positives = 34/85 (40%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGA 1866
+S++ +K+ E + +TP+ EG E S + DP V G
Sbjct: 1404 MSLVRKKVQEFEHVNGKYSTPDMILEGPESKKCSEMVSS-DPNTPV--PASPAHTHAGPL 1460
Query: 1867 TVMEKSSEDLATPPLSLANEEEMIE 1891
+ EK A PPL E++ +E
Sbjct: 1461 ALAEK-----ADPPLGFQEEKDQVE 1480
Score = 49 (22.3 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 1698 VEREKSEEL-GLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSG 1752
++ EK EE G+ A ++ + + S K D + ED+K +Q + Q+G
Sbjct: 1550 LKEEKQEENEGIQEKEKALEKPESNSSPGKGEDKEVKPAEDTKVEEKEQSETQQNG 1605
Score = 49 (22.3 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 1065 EALKPENKAQAGRIENI--ANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPE 1122
E LK E + + I+ A P+ S P + P D +E+ EQS Q N +
Sbjct: 1548 EKLKEEKQEENEGIQEKEKALEKPESNSSPGKGEDKEVKPAEDTKVEE-KEQSETQQNGD 1606
Query: 1123 VKGEE 1127
K EE
Sbjct: 1607 -KEEE 1610
Score = 48 (22.0 bits), Expect = 3.1e-35, Sum P(4) = 3.1e-35
Identities = 21/87 (24%), Positives = 29/87 (33%)
Query: 964 RVMKEIFSETCSSKAKTGDSSL--NEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPT 1021
+V E + E C SK K + NEG K + + K T
Sbjct: 1534 KVESEEYQENCESKEKLKEEKQEENEGIQEKEKALEKPESNSSPGKGEDKEVKPAEDTK- 1592
Query: 1022 VETPPPGFNSPNENPGELTGTKNDASV 1048
VE N + E G K+D +V
Sbjct: 1593 VEEKEQSETQQNGDKEEEDGKKDDRNV 1619
Score = 46 (21.3 bits), Expect = 6.2e-36, Sum P(3) = 6.2e-36
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 356 EQWTEEEFEKMCQA-ESSDSPKLKE-EGL---EKSLPTVVSSSAP 395
E+ EE+++ C++ E K +E EG+ EK+L S+S+P
Sbjct: 1533 EKVESEEYQENCESKEKLKEEKQEENEGIQEKEKALEKPESNSSP 1577
Score = 42 (19.8 bits), Expect = 5.7e-37, Sum P(3) = 5.7e-37
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 340 QHYGRGKRAREVRSY------EEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
++ G+GKR R+ +Y +++W +E + Q+E S + ++E E+
Sbjct: 1236 RNLGKGKRIRKQVNYNDASQEDQEWQDELSDN--QSEYSIGSEDEDEDFEE 1284
Score = 42 (19.8 bits), Expect = 6.2e-36, Sum P(3) = 6.2e-36
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 549 PAASDDIP-SPGPDPKTNEQPQSESLNPSGGESTATDG 585
P +D P D K E+ QSE+ G+ DG
Sbjct: 1577 PGKGEDKEVKPAEDTKVEEKEQSET--QQNGDKEEEDG 1612
Score = 42 (19.8 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 577 GGESTATDGNVSSIPTAPVPDS 598
G ES VSS P PVP S
Sbjct: 1430 GPESKKCSEMVSSDPNTPVPAS 1451
Score = 41 (19.5 bits), Expect = 3.1e-35, Sum P(4) = 3.1e-35
Identities = 29/135 (21%), Positives = 52/135 (38%)
Query: 255 SESEIDV-FESVDKQRREEEMATWRKLIRGLGTDGE-PLPPLPSRLVTDDDLKALYEAMK 312
++SE + E D+ E R+ R L +D + PLPPL +R+ + ++ +
Sbjct: 1267 NQSEYSIGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQR 1326
Query: 313 ---IYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQA 369
+ + G+ P H D RGK +E R+Y + E
Sbjct: 1327 KAFLNAIMRWGMPPQDAFN---SHWLVRDL----RGKSEKEFRAYVSLFMRHLCEPGADG 1379
Query: 370 ESSDSPKLKEEGLEK 384
+ + + EGL +
Sbjct: 1380 AETFADGVPREGLSR 1394
Score = 38 (18.4 bits), Expect = 3.3e-34, Sum P(4) = 3.3e-34
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 1811 PEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVV 1853
P L E D P +++ E + S DP +V+
Sbjct: 1459 PLALAEKADPPLGFQEEKDQVEQKSRRASDSQVGSHDPVPTVL 1501
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 448 (162.8 bits), Expect = 5.7e-37, Sum P(2) = 5.7e-37
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + + L ++R GKL +LD+L
Sbjct: 732 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGQEILLSLIRSSGKLILLDKL 788
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 789 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 848
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 849 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 908
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 909 TVEEEIIERAKKKM 922
Score = 54 (24.1 bits), Expect = 5.7e-37, Sum P(2) = 5.7e-37
Identities = 47/190 (24%), Positives = 74/190 (38%)
Query: 1577 GPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPG-ADNP-EGGVIVPEHKSENMGEKDD 1634
G A L K + + KA + DEHG P +DNP E G + + ++ +K
Sbjct: 1323 GGEEAKLKKRKPRVKKENKAPRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQ 1382
Query: 1635 ISSEHAFGSSLVL---QDKASEAEIGDRID--EPQVDGFSPRSMSGVVDELVDEAGDHMG 1689
E+ + +DK + E D E + G +S S + H+
Sbjct: 1383 KKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKKPKGGDAKSSS---KSKRSQGPVHIT 1439
Query: 1690 VSHSPVHVVEREKSEELGLPSLSSATKE----EKIDGSLDKDPDSNLVV---LEDSKG-- 1740
PV + E E ++L + S + +K LDK PD L V LE ++
Sbjct: 1440 AGSEPVPIGEDE-DDDLDQETFSICKERMRPVKKALKQLDK-PDKGLNVQEQLEHTRNCL 1497
Query: 1741 -SIGDQMDCC 1749
IGD++ C
Sbjct: 1498 LKIGDRIAEC 1507
Score = 47 (21.6 bits), Expect = 7.2e-34, Sum P(4) = 7.2e-34
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ ++E + D + V E E+ +EL
Sbjct: 995 ENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELE 1054
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1055 EIYMLPRIRSSTKKAQTNDS-DSDTES 1080
Score = 45 (20.9 bits), Expect = 7.2e-34, Sum P(4) = 7.2e-34
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1815 PEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P H D P+ E K +G EK P +++ KE+
Sbjct: 1356 PRHSDNPSEEG--EVKDDGLEKSPMKKKQKKKENKEN 1390
Score = 40 (19.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 362 EFEKMCQAES-SDSPKLKEEGLEKS 385
EF +++ S+ ++K++GLEKS
Sbjct: 1352 EFSSPRHSDNPSEEGEVKDDGLEKS 1376
Score = 37 (18.1 bits), Expect = 7.2e-34, Sum P(4) = 7.2e-34
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1992 QEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVP 2034
+E +K++ EK+P G SK + V + G VP
Sbjct: 1405 KERKKSKDKKEKKPKGGDAKSSSKSKRSQGPVHITA-GSEPVP 1446
Score = 37 (18.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 1038 ELTGTKNDASVRGDHTPVSGH 1058
E +G+ D+ + HTP + H
Sbjct: 1574 EASGSSRDSLMSQSHTPHNLH 1594
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 454 (164.9 bits), Expect = 6.1e-37, Sum P(2) = 6.1e-37
Identities = 110/247 (44%), Positives = 144/247 (58%)
Query: 4 VEENLGSIGNSKGRSVHN------SVMELRNICNHPYLSQLHAEEV--DTL------IPK 49
+E+N + SKG + HN ++MELR CNHPYL E++ D P
Sbjct: 714 LEKNFSFL--SKGANQHNMPNLINTMMELRKCCNHPYLISGAEEKILEDFRKTHSPDAPD 771
Query: 50 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 109
L +++ GKL ++D+LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 772 FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGR 831
Query: 110 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 169
G R A ID+F + DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR
Sbjct: 832 VRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQAR 891
Query: 170 AHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREY 226
HRIGQ + V V R T + E ++ A KLG+ Q I N + E
Sbjct: 892 CHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKME- 950
Query: 227 LESLLRE 233
+E LLR+
Sbjct: 951 VEDLLRK 957
Score = 61 (26.5 bits), Expect = 8.7e-36, Sum P(3) = 8.7e-36
Identities = 42/194 (21%), Positives = 66/194 (34%)
Query: 503 FVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDP 562
F + PG + S PM G VP+ G GL+ + S P P
Sbjct: 2506 FAAMPPGEEVKSTLSMLPMVLPGMAA-------VPQMFGVG-GLLNTPMATTCASAVPAP 2557
Query: 563 KTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNS 622
++ S E NV + P+A SP + I SS VA N
Sbjct: 2558 LSSTTKGGVSAAEKTAEDQPGSHNVKTDPSAEDKPGPSPFSSDQPEPAITTSSPVA-FNP 2616
Query: 623 ELNTNLATAXXXXXXXXX-XXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSA 681
L ++ + Q+R +++ G+ +RR +++ G P +
Sbjct: 2617 FLIPGVSPGLIYPSMFLSPGMGMALPAMQQARHSEAAGLESQRRKRKKTKGDAP----NP 2672
Query: 682 GPESKSNLQSENNS 695
PE L+ E S
Sbjct: 2673 NPEPVPGLEREPGS 2686
Score = 59 (25.8 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 25/103 (24%), Positives = 41/103 (39%)
Query: 1036 PGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVP 1095
P T N+ +VRG+ T V L K E LK K S+ ++ LP P
Sbjct: 1969 PDPFTSKANNVTVRGEPTAVPPELLQVKQELLKEPWK----------ESTEGNQGLPPYP 2018
Query: 1096 N-LETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPAS 1137
E P D ++ ++ N + + G+ + S++ S
Sbjct: 2019 EGSELKPEDMDYESKEELDKDGNCQSQDYPGKYSEEESKSSTS 2061
Score = 53 (23.7 bits), Expect = 6.1e-37, Sum P(2) = 6.1e-37
Identities = 25/88 (28%), Positives = 35/88 (39%)
Query: 496 SSQPTTAFVP-VAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPA---- 550
+S P AF P + PG PS + P G G + + +Q R + GL
Sbjct: 2608 TSSPV-AFNPFLIPGVSPGLIYPSMFLSP-GMGMALPAMQQA--RHSEAAGLESQRRKRK 2663
Query: 551 -ASDDIPSPGPDPKTN--EQPQSESLNP 575
D P+P P+P +P SE P
Sbjct: 2664 KTKGDAPNPNPEPVPGLEREPGSEQSCP 2691
Score = 49 (22.3 bits), Expect = 2.1e-33, Sum P(4) = 2.1e-33
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKG 798
+PSG+ P V + G ++ SE+SSS G
Sbjct: 2123 EPSGTLPTPVLTSSTGPRGGISEPEASEHSSSSG 2156
Score = 42 (19.8 bits), Expect = 2.1e-33, Sum P(4) = 2.1e-33
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 889 VSVPVKRHGRKTPTTG-EAPRRRGKK-QGSGPS 919
+++P + R + G E+ RR+ KK +G P+
Sbjct: 2639 MALPAMQQARHSEAAGLESQRRKRKKTKGDAPN 2671
Score = 39 (18.8 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 1824 LATPEEKTEGSEKDPDSSFAAQEDPKESVVEA-GDQMGVSL-GGATVMEKSSED 1875
L+ + T+G+ P+ +ED E V+ QM S GG + + +D
Sbjct: 1319 LSAEQGVTDGASDVPERGHTDKEDNTEDKVDGLQKQMESSSDGGDGLFAEKKDD 1372
Score = 39 (18.8 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 1052 HTPVSGHTLASKTEA-LKPENKAQAGRIENIANSSPDDKSLPMVPNLETAP 1101
+TP++ T AS A L K E A P ++ P+ E P
Sbjct: 2543 NTPMAT-TCASAVPAPLSSTTKGGVSAAEKTAEDQPGSHNVKTDPSAEDKP 2592
Score = 39 (18.8 bits), Expect = 2.3e-32, Sum P(4) = 2.3e-32
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 662 PRRRGKR---QALGSPP-ISDVSAG 682
PRRRG+R + L +P ++D +G
Sbjct: 2443 PRRRGRRPRSELLKTPALVADAPSG 2467
Score = 38 (18.4 bits), Expect = 8.7e-36, Sum P(3) = 8.7e-36
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 2063 PSASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQD 2099
P P E P+ A D E R+ PQD
Sbjct: 2678 PGLEREPGSEQSCPEPRAPAPPDREHAAQAREGGPQD 2714
Score = 38 (18.4 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 1323 NHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPSD-AIVNNLLET 1375
N P+N+ A + GP ++ S +V D +++ LET
Sbjct: 1656 NEPENLMKIEAGDDHLGPPRGSLSDMTCESFISKTQDVLSLTHDESLLPGSLET 1709
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 435 (158.2 bits), Expect = 6.6e-37, P = 6.6e-37
Identities = 93/202 (46%), Positives = 130/202 (64%)
Query: 4 VEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKL 62
VE N+ + + + N +M LR CNHPYL + +D + + + +V GK
Sbjct: 547 VETNI-PVESEVNLKLQNIMMLLRKCCNHPYLIEY---PIDPVTQEFKIDEELVTNSGKF 602
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
+LDR+LP+LKA H+VL FS MTR+LD++ DY F+ + + RLDG S +R + F
Sbjct: 603 LILDRMLPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSF 662
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
N D FIFL+S RAGG+G+NL AADTVII+D+DWNPQ DLQAQ R HRIGQ + V+V
Sbjct: 663 NT-DPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 721
Query: 183 RFETVQTVEEQV--RASAEHKL 202
R T T+++++ RA+A+ KL
Sbjct: 722 RLVTANTIDQKIVERAAAKRKL 743
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 461 (167.3 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 97/228 (42%), Positives = 143/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 915 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLML 974
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 975 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1034
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1035 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1094
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1095 VTRASVEERITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1140
Score = 47 (21.6 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 15/74 (20%), Positives = 31/74 (41%)
Query: 1219 NKTDGDSVEKLEDTVDD--HSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIM 1276
++ +G+ ++ D + ++E+ P ++ GN + SK PL +
Sbjct: 1493 DRVEGEDKQESSDGKERAREERLEEMEKAQPSPEQLLKGNFISHVLLLISKRSRNVPLSV 1552
Query: 1277 KSTEGPSVSMKADD 1290
T GP KA++
Sbjct: 1553 SRTPGPRDDTKAEE 1566
Score = 45 (20.9 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 1821 PASLATPEEKTEGSEKDP--DSSFAAQEDPKESVVEA 1855
PA+L T ++ EG +K D A+E+ E + +A
Sbjct: 1485 PAALPTALDRVEGEDKQESSDGKERAREERLEEMEKA 1521
Score = 45 (20.9 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 1213 EVFKPENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSD 1251
E+FK + + D VE D + + +L+ R+ D +D
Sbjct: 1145 ELFKDDVEGDNKDVEDSSVIHYDDAAISKLLDRNQDATD 1183
Score = 45 (20.9 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS 598
N + + L P G E +SS P PVP S
Sbjct: 1421 NGKYSTPDLIPEGPEGKKPGEVISSDPNTPVPAS 1454
Score = 45 (20.9 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 340 QHYGRGKRAREVRSY-----EEQWTEEEFEKMCQAESSDSPKLKEEGLEKS 385
++ G+GKR R+ +Y E+Q + E+ + E D + E G +S
Sbjct: 1246 RNLGKGKRIRKQVNYNDASQEDQDNQSEYSIGSEDEDEDFEERPEGGRRQS 1296
Score = 41 (19.5 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 331 GEHLGALDTQ-HYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLK 378
GE AL T G+ +E +E+ EE E+M +A+ S LK
Sbjct: 1482 GEGPAALPTALDRVEGEDKQESSDGKERAREERLEEMEKAQPSPEQLLK 1530
Score = 41 (19.5 bits), Expect = 1.9e-35, Sum P(4) = 1.9e-35
Identities = 29/135 (21%), Positives = 52/135 (38%)
Query: 255 SESEIDV-FESVDKQRREEEMATWRKLIRGLGTDGE-PLPPLPSRLVTDDDLKALYEAMK 312
++SE + E D+ E R+ R L +D + PLPPL +R+ + ++ +
Sbjct: 1270 NQSEYSIGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQR 1329
Query: 313 ---IYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQA 369
+ + G+ P H D RGK +E R+Y + E
Sbjct: 1330 KAFLNAIMRWGMPPQDAFN---SHWLVRDL----RGKSEKEFRAYVSLFMRHLCEPGADG 1382
Query: 370 ESSDSPKLKEEGLEK 384
+ + + EGL +
Sbjct: 1383 AETFADGVPREGLSR 1397
Score = 40 (19.1 bits), Expect = 9.4e-36, Sum P(3) = 9.4e-36
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSE-KDPDSSFAAQEDPKESV 1852
+S++ +K+ E + +TP+ EG E K P ++ DP V
Sbjct: 1407 MSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKPGEVISS--DPNTPV 1451
Score = 39 (18.8 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSS-VSQIESKEPEAKAFEPM 2206
E+ D + + E+++E ++ P G S+ + K K P+
Sbjct: 1266 EDQDNQSEYSIGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPLPPL 1311
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 446 (162.1 bits), Expect = 7.6e-37, Sum P(2) = 7.6e-37
Identities = 105/234 (44%), Positives = 143/234 (61%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + L ++R GKL +LD+L
Sbjct: 745 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGIETLQSLIRSSGKLILLDKL 801
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 802 LTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 861
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 862 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 921
Query: 189 TVEEQVRASAEHKLGVANQSI----TAG--FFDNNTSAED----RREYLESLLR 232
TVEE++ A+ K+ + + I T G DNN+ + +E L ++L+
Sbjct: 922 TVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLDNNSGRSNSNPFNKEELTAILK 975
Score = 55 (24.4 bits), Expect = 7.6e-37, Sum P(2) = 7.6e-37
Identities = 21/87 (24%), Positives = 36/87 (41%)
Query: 1060 LASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFD-IPIEKHNEQSRNQ 1118
L + +K ENKA + E+ SP S E G D P++K ++ N+
Sbjct: 1343 LKKRKPRVKKENKAPKVKDEHGNELSPPRHSDNQSEEGEVKDDGLDKSPVKKKQKKKENK 1402
Query: 1119 NNPEVKGEETPVSSEAPASTEAFEQEK 1145
N E K + E+ + +++K
Sbjct: 1403 ENKE-KQTSSKKEKESDKEKKKTKEKK 1428
Score = 49 (22.3 bits), Expect = 2.5e-35, Sum P(3) = 2.5e-35
Identities = 22/81 (27%), Positives = 33/81 (40%)
Query: 1573 NMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENMGEK 1632
NM+ G L K + + KA V DEHG +L P P H S+N E+
Sbjct: 1334 NMKDGEEGKL-KKRKPRVKKENKAPKVKDEHGN-ELSP-----------PRH-SDNQSEE 1379
Query: 1633 DDISSEHAFGSSLVLQDKASE 1653
++ + S + + K E
Sbjct: 1380 GEVKDDGLDKSPVKKKQKKKE 1400
Score = 46 (21.3 bits), Expect = 6.7e-36, Sum P(2) = 6.7e-36
Identities = 22/117 (18%), Positives = 42/117 (35%)
Query: 647 QTKGQSRKTQSGG-VTPRRRGKRQAL-GSPPISDVSAGPESKSNLQSENNSGGLRLSKSV 704
+ K K + G ++P R Q+ G + P K + EN + + S
Sbjct: 1353 ENKAPKVKDEHGNELSPPRHSDNQSEEGEVKDDGLDKSPVKKKQKKKENKENKEKQTSSK 1412
Query: 705 SMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHD 761
+ D ++ K + G A S G K ++ V + ++P+ + D
Sbjct: 1413 KEKESDKEKKKTKEKKEKPKGGEAKS----GSKGKRSQGPVHITAGSEPVPIGEDED 1465
Score = 46 (21.3 bits), Expect = 2.5e-35, Sum P(3) = 2.5e-35
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 2174 EEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMG--GP------ 2225
+++K +KE SS + ES + + K E + G A ++ S+G GP
Sbjct: 1396 QKKKENKENKEKQTSSKKEKESDKEKKKTKEKKEKPKGGEA-KSGSKGKRSQGPVHITAG 1454
Query: 2226 SPPLVIAEDKTENEIEED 2243
S P+ I ED+ +++++++
Sbjct: 1455 SEPVPIGEDE-DDDLDQE 1471
Score = 44 (20.5 bits), Expect = 8.2e-35, Sum P(3) = 8.2e-35
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 1699 EREKS-EELG-LPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMD 1747
ER+K EE+ LP + S+TK+ + + S + D ++ L+ S GS + D
Sbjct: 1063 ERQKELEEIYMLPRIRSSTKKAQTNDS-ESDAETKRR-LQRSSGSESETDD 1111
Score = 41 (19.5 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 2175 EEKNECSDKEPVGSSVSQIESKEPEAK 2201
E K++ DK PV + E+KE + K
Sbjct: 1381 EVKDDGLDKSPVKKKQKKKENKENKEK 1407
Score = 40 (19.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 1689 GVSHSPVHVVEREKSEELGLPSLSSATKEEKID 1721
G+ SPV +++K + +S+ KE++ D
Sbjct: 1386 GLDKSPVKKKQKKKENKENKEKQTSSKKEKESD 1418
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 22/117 (18%), Positives = 51/117 (43%)
Query: 1826 TPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLAN 1885
T +K + S+K+ + +E PK ++G + G G + SE + P+
Sbjct: 1409 TSSKKEKESDKEKKKTKEKKEKPKGGEAKSGSK-GKRSQGPVHITAGSEPV---PIGEDE 1464
Query: 1886 EEEMI-EGFD-----NDPTGISMAVMDSKECAAEAADQMCVSEGCVV-VTEKLSEDL 1935
++++ E F P ++ +D + +Q+ + C++ + +++SE L
Sbjct: 1465 DDDLDQETFSICKERMRPVKKALKQLDKPDKGLTVQEQLEHTRNCLLKIGDRISECL 1521
Score = 38 (18.4 bits), Expect = 4.6e-35, Sum P(2) = 4.6e-35
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 337 LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEE 380
LD + ++ +E + +E+ T + EK E + + KE+
Sbjct: 1387 LDKSPVKKKQKKKENKENKEKQTSSKKEKESDKEKKKTKEKKEK 1430
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 480 (174.0 bits), Expect = 7.6e-37, Sum P(6) = 7.6e-37
Identities = 110/234 (47%), Positives = 149/234 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT-------LIPKHY-LPPIVRLCGKLE 63
G++ ++ N++MELR CNHPYL E++ T +IP + L +VR GKL
Sbjct: 1077 GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLV 1136
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 1137 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1196
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R
Sbjct: 1197 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 1256
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 233
T + E ++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1257 LITRNSYEREMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1309
Score = 59 (25.8 bits), Expect = 7.6e-37, Sum P(6) = 7.6e-37
Identities = 30/126 (23%), Positives = 55/126 (43%)
Query: 1772 WEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDIS-IMPEKLPEHLDIPASLATPEEK 1830
+E ++ S+ P+ S+SV E ++ ++D+S + P +S +T E +
Sbjct: 2041 YEMRVS-PSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESE 2099
Query: 1831 TEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEEEMI 1890
E EK D S + D +ES++ + +S G + E + TP L L E +
Sbjct: 2100 DEKEEKLTDQSRSKLYD-EESLLS----LTMSQDGFP--NEDGEQM-TPELLLLQERQRA 2151
Query: 1891 EGFDND 1896
+ D
Sbjct: 2152 SEWPKD 2157
Score = 53 (23.7 bits), Expect = 7.6e-37, Sum P(6) = 7.6e-37
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 1234 DDHSLVKELIHRSPDH-SDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVA 1292
DD ++ E HR D+ SD+V G ED PL+ P + EG + M ++++
Sbjct: 1664 DDKAIAAE--HRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEIS 1721
Score = 42 (19.8 bits), Expect = 7.6e-37, Sum P(6) = 7.6e-37
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R R++ S ++ + TE + E +C+A
Sbjct: 1456 YGWG-RWRDILSHGRFKRRMTERDVETICRA 1485
Score = 41 (19.5 bits), Expect = 1.3e-35, Sum P(6) = 1.3e-35
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1178 DIPIEKGVEQSGTEI 1192
D P+EK E++ T++
Sbjct: 2002 DAPVEKSPEETATQV 2016
Score = 40 (19.1 bits), Expect = 7.6e-37, Sum P(6) = 7.6e-37
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEED 2243
T+ G PPL ED E+E ++D
Sbjct: 2523 TASGTTLRLPPLQPEEDDDEDEEDDD 2548
Score = 40 (19.1 bits), Expect = 6.9e-36, Sum P(5) = 6.9e-36
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 1532 GDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALL 1583
G++K ++E +C+ + ++++L R + + DG + + E P A L
Sbjct: 2288 GNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVG--EDAPRRAEL 2337
Score = 38 (18.4 bits), Expect = 7.6e-37, Sum P(6) = 7.6e-37
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEE 2175
GP + ++ G PVP A+ +A EE
Sbjct: 2192 GPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEE 2228
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 431 (156.8 bits), Expect = 7.9e-37, Sum P(2) = 7.9e-37
Identities = 91/194 (46%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 739 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 795
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 796 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 855
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 856 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 915
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 916 SVEEDILERAKKKM 929
Score = 70 (29.7 bits), Expect = 7.9e-37, Sum P(2) = 7.9e-37
Identities = 67/303 (22%), Positives = 119/303 (39%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHS----PVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH P+H
Sbjct: 1174 GCIKALKDNSSGTERTGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELIPLH 1224
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQS 1751
EE ++ TK D K+ DSNL++ E GS I D +
Sbjct: 1225 KSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLT 1284
Query: 1752 GVVVPENLSDFCQPSS--SLAPWEAKI-DGSSEKDPVSSQSVLEGSKETVAEAGDQMDIS 1808
++P++ Q + A + K+ K S GSK A A + + +
Sbjct: 1285 HKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKEAQRLSGAGGSKRRKARA--KKNKA 1342
Query: 1809 IMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATV 1868
+ K+ E + +S E+ E +K +S ++E K+S V + G
Sbjct: 1343 MKSIKVKEEMKSDSSPLPSEKSDEDDDKLNESKSESKERSKKSSVSDAPVHITASGEPVP 1402
Query: 1869 MEKSSEDLATPPLSLANE-----EEMIEGFDNDPTGISMA--VMDSKECAAEAADQM--C 1919
+ + SE+L S+ E + ++ D G+S + +++C + D + C
Sbjct: 1403 ISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITEC 1462
Query: 1920 VSE 1922
+ E
Sbjct: 1463 LKE 1465
Score = 51 (23.0 bits), Expect = 3.9e-33, Sum P(3) = 3.9e-33
Identities = 25/84 (29%), Positives = 32/84 (38%)
Query: 944 GSKTISLRSKQETADVN-DVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXX 1002
GSK R+K+ A + V MK S S K+ D LNE K
Sbjct: 1329 GSKRRKARAKKNKAMKSIKVKEEMKSDSSPLPSEKSDEDDDKLNESKSESK--------- 1379
Query: 1003 XEVAKKQSSDDKTCSVTPTVETPP 1026
E +KK S D +T + E P
Sbjct: 1380 -ERSKKSSVSDAPVHITASGEPVP 1402
Score = 38 (18.4 bits), Expect = 3.9e-33, Sum P(3) = 3.9e-33
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 1244 HRSPDHSDMVIGNVPGNTSED 1264
HRS DH + G++ + D
Sbjct: 1611 HRSRDHRSNLEGSIKDRSHSD 1631
Score = 37 (18.1 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 21/83 (25%), Positives = 29/83 (34%)
Query: 1276 MKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNV----EPT 1331
MKS P S K+D+ D E S +E S K+ V + P ++ EP
Sbjct: 1352 MKSDSSPLPSEKSDEDDDKLNE----------SKSESKERSKKSSVSDAPVHITASGEPV 1401
Query: 1332 SASPERSGPQNSAVGFCDKSEIP 1354
S E C + P
Sbjct: 1402 PISEESEELDQKTFSICKERMRP 1424
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 411 (149.7 bits), Expect = 9.5e-37, P = 9.5e-37
Identities = 90/202 (44%), Positives = 127/202 (62%)
Query: 4 VEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKL 62
VE N+ I + + N +M LR CNHPY+ + +D + + + +V GK
Sbjct: 202 VEGNI-PIESEVNLKLQNIMMLLRKCCNHPYMIEY---PIDPVTQEFKIDEELVTNSGKF 257
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
+LDR+LP+LK H+VL FS MT +LD++ DY + + + RLDG S +R I F
Sbjct: 258 LILDRMLPELKKRCHKVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYSEREKNIYSF 317
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
N D F+FL+S RAGG+G+NL AADTVII+D+DWNPQ DLQAQ R HRIGQ + V+V
Sbjct: 318 NT-DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 376
Query: 183 RFETVQTVEEQV--RASAEHKL 202
R T T+++++ RA+A+ KL
Sbjct: 377 RLVTANTIDQKIVERAAAKRKL 398
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 461 (167.3 bits), Expect = 9.9e-37, Sum P(3) = 9.9e-37
Identities = 97/228 (42%), Positives = 143/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 832 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLML 891
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 892 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 951
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 952 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1011
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1012 VTRASVEERITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1057
Score = 49 (22.3 bits), Expect = 9.9e-37, Sum P(3) = 9.9e-37
Identities = 33/146 (22%), Positives = 59/146 (40%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSE-KDPDSSFAAQEDPKESVVEA---------G 1856
+S++ +K+ E + +TP+ EG E K P ++ DP V + G
Sbjct: 1370 MSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKPSEVISS--DPNTPVPASPAHLLPAPLG 1427
Query: 1857 --DQMGVSLGGATVMEKSSEDLATPP--LSLANEEEMIEGFDNDPTGISMAVMDSKECAA 1912
D+M LG E + PP +L + +EG D + ++ E A
Sbjct: 1428 LPDKMEAQLGYMDEKELGVQKPKKPPEIQALPTALDRVEGEDKHESSDGKERLEETEKAP 1487
Query: 1913 EAADQMCVSEGCVVVTEKLSEDLGLN 1938
+ +Q+ E + EK+ + L L+
Sbjct: 1488 PSPEQL-PKEEMLPEKEKILDKLELS 1512
Score = 46 (21.3 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS 598
N + + L P G E +SS P PVP S
Sbjct: 1384 NGKYSTPDLIPEGPEGKKPSEVISSDPNTPVPAS 1417
Score = 45 (20.9 bits), Expect = 9.9e-37, Sum P(3) = 9.9e-37
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 263 ESVDKQRREEEMATWRKLIRGLGTDGE-PLPPLPSRLVTDDDLKALYEAMK---IYDAPK 318
E D + R E + R+ R L +D + PLPPL +R+ + ++ + + +
Sbjct: 1242 EDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMR 1301
Query: 319 TGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLK 378
G+ P H D RGK +E R+Y + E + + +
Sbjct: 1302 WGMPPQDAFN---SHWLVRDL----RGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVP 1354
Query: 379 EEGLEK 384
EGL +
Sbjct: 1355 REGLSR 1360
Score = 42 (19.8 bits), Expect = 5.4e-35, Sum P(4) = 5.4e-35
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 340 QHYGRGKRAREVRSY------EEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
++ G+GKR R+ +Y +++W +E + Q+E S + ++E E+
Sbjct: 1200 RNLGKGKRIRKQVNYNDASQEDQEWQDELSDN--QSEYSIGSEDEDEDFEE 1248
Score = 37 (18.1 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPM 2206
E +D + + E+++E ++ P G S + ++ ++ +P+
Sbjct: 1227 ELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDKPL 1271
Score = 37 (18.1 bits), Expect = 5.4e-35, Sum P(4) = 5.4e-35
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 522 QPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDI 555
+P+G+ R QS Q+ R K + +L +I
Sbjct: 1249 RPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNI 1282
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 460 (167.0 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 100/214 (46%), Positives = 137/214 (64%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHY 51
+E+N + G++ + N++MELR CNHPYL + E++ +T P +
Sbjct: 1111 LEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFKETYNPTAPDFH 1170
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPK+KA H+VL FS M R LD++EDYL K+Y Y R+DG
Sbjct: 1171 LQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVR 1230
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQ-AQARA 170
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQ AQAR
Sbjct: 1231 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQKAQARC 1290
Query: 171 HRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 204
HRIGQ + V V R T + E ++ A KLG+
Sbjct: 1291 HRIGQNKAVKVYRLITRNSYEREMFDRASLKLGL 1324
Score = 83 (34.3 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 41/190 (21%), Positives = 76/190 (40%)
Query: 651 QSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQD 710
QS+ S TP + AL + P++ S P++K N + + +++
Sbjct: 2001 QSKVALSRTSTPLLHQYQMALSASPLTPQSRLPDAKVNTPEDTKVKSENRKEDAQSSEEE 2060
Query: 711 ALS-QELSNKIQVQPCGVATSADVAGPDQKPA---EQSVRVVQSN-QPINL-PATHDSSS 764
++S +E ++ +P A V + KP+ E R+V + +P+ PA+
Sbjct: 2061 SMSTEETQTVMKSEPLSPKNGAPVQNTEHKPSVKIEADRRMVAARTEPLTPNPASKKQRV 2120
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKA 824
GS + D SD S +SSS + S+ + R S +
Sbjct: 2121 SKRGSDSSSDSDSD-----SDRSSCSSRSSSSSS------SSSSSCSHSRSGSSSSSSSS 2169
Query: 825 CTNASKSKAT 834
C++AS S ++
Sbjct: 2170 CSSASSSSSS 2179
Score = 69 (29.3 bits), Expect = 2.2e-36, Sum P(4) = 2.2e-36
Identities = 49/266 (18%), Positives = 107/266 (40%)
Query: 511 QSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQS 570
++ + S P+ PK G +Q+ E P + + ++ A ++ + P+P + +Q S
Sbjct: 2066 ETQTVMKSEPLSPKN-GAPVQNTEHKPSVKIEADRRMVAARTEPLT---PNPASKKQRVS 2121
Query: 571 ESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLAT 630
+ + S +S + D + SS + S S S+ S + SS+ ++ +S +++ ++
Sbjct: 2122 KRGSDSSSDSDS-DSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSS 2180
Query: 631 AXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAG-PESKSNL 689
+ + +++K G TP + A ++ +S E++ +
Sbjct: 2181 SSSSSSSSSSSSEESDSDEEEAQKRAEG--TPHIK----AYDEESVASLSTTHDETQDSF 2234
Query: 690 QSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAG--PDQKPAEQSVRV 747
Q N+G S + G A S +++ + + G P + S V
Sbjct: 2235 QM--NNGTPNSSYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRNYDSNTV 2292
Query: 748 VQ--SNQPINLPATHDSSSQPSGSTP 771
+ + ++ P S+PS TP
Sbjct: 2293 ASFYTTKLLDSPGAATDYSEPSAPTP 2318
Score = 63 (27.2 bits), Expect = 1.2e-34, Sum P(5) = 1.2e-34
Identities = 34/182 (18%), Positives = 66/182 (36%)
Query: 1018 VTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHT-LASKTEALKPENKAQAG 1076
+TP P N+P + + K DA + + + T K+E L P+N A
Sbjct: 2026 LTPQSRLPDAKVNTPEDTKVKSENRKEDAQSSEEESMSTEETQTVMKSEPLSPKNGAPVQ 2085
Query: 1077 RIENIANSSPD-DKSL------PMVPN-----LETAPPGFDIPIEKHNEQSRNQNNPEVK 1124
E+ + + D+ + P+ PN + G D + ++ R+ +
Sbjct: 2086 NTEHKPSVKIEADRRMVAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSS 2145
Query: 1125 GEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKG 1184
+ SS S ++ SS + + SS + S + + E + + +K
Sbjct: 2146 SSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKR 2205
Query: 1185 VE 1186
E
Sbjct: 2206 AE 2207
Score = 60 (26.2 bits), Expect = 6.9e-36, Sum P(5) = 6.9e-36
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPR 1671
D +G V PE+K KDDI + + LV+ D + GD+I P + R
Sbjct: 1724 DYMDGDVEDPEYKPAPAMFKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTR 1782
Score = 58 (25.5 bits), Expect = 6.7e-35, Sum P(6) = 6.7e-35
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 1262 SEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDV 1321
S+ SS ++ S+ S S + HSR SGS +S + CS+ S +
Sbjct: 2125 SDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSR-----SGSSSSSSSSCSSASSSSSS 2179
Query: 1322 GNHPQNVEPTSASPERSGPQNSA 1344
+ + +S+S E + A
Sbjct: 2180 SSSSSSSSSSSSSEESDSDEEEA 2202
Score = 56 (24.8 bits), Expect = 6.0e-34, Sum P(5) = 6.0e-34
Identities = 22/106 (20%), Positives = 41/106 (38%)
Query: 1260 NTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKT 1319
NT ED+ +S+E S+S + S +G+P+ + +V ++
Sbjct: 2038 NTPEDTKVKSENRKEDAQSSEEESMSTEETQTVMKSEPLSPKNGAPVQNTEHKPSVKIEA 2097
Query: 1320 DVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPS 1365
D EP + +P + S G D S +++ + C S
Sbjct: 2098 DRRMVAARTEPLTPNPASKKQRVSKRG-SDSSSDSDSDSDRSSCSS 2142
Score = 55 (24.4 bits), Expect = 6.7e-35, Sum P(6) = 6.7e-35
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 1009 QSSDDKTCSV--TPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEA 1066
QSS++++ S T TV P + N P + T K + D V A++TE
Sbjct: 2055 QSSEEESMSTEETQTVMKSEP-LSPKNGAPVQNTEHKPSVKIEADRRMV-----AARTEP 2108
Query: 1067 LKPENKAQAGRIENIANSSPDD 1088
L P ++ R+ + S D
Sbjct: 2109 LTPNPASKKQRVSKRGSDSSSD 2130
Score = 54 (24.1 bits), Expect = 6.9e-36, Sum P(5) = 6.9e-36
Identities = 36/143 (25%), Positives = 57/143 (39%)
Query: 1714 ATKEEKI-----DGSLDKDPDSNLVVLED--SKGSIGDQMDCCQSGVVVPENLSDFCQPS 1766
A+K++++ D S D D DS+ S S C S + S C +
Sbjct: 2114 ASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSA 2173
Query: 1767 SSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLAT 1826
SS + SS SS S E S EA + + + + E + ASL+T
Sbjct: 2174 SSSS------SSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDE--ESVASLST 2225
Query: 1827 PEEKTEGSEK----DPDSSFAAQ 1845
++T+ S + P+SS+ Q
Sbjct: 2226 THDETQDSFQMNNGTPNSSYLLQ 2248
Score = 51 (23.0 bits), Expect = 1.9e-33, Sum P(5) = 1.9e-33
Identities = 32/155 (20%), Positives = 62/155 (40%)
Query: 1216 KPEN-KTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPL 1274
K EN K D S E+ + ++ V + SP + V + S K+ + +
Sbjct: 2046 KSENRKEDAQSSEEESMSTEETQTVMKSEPLSPKNG----APVQNTEHKPSVKIEADRRM 2101
Query: 1275 IMKSTEG--PSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTS 1332
+ TE P+ + K V+ + S S +S ++ S+ S ++ + + +S
Sbjct: 2102 VAARTEPLTPNPASKKQRVSKRGSD----SSSDSDSDSDRSSCSSRSSSSSSSSS---SS 2154
Query: 1333 ASPERSGPQNSAVGFCDKSEIPSMEAEVAKCPSDA 1367
S RSG +S+ C + S + + S +
Sbjct: 2155 CSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSS 2189
Score = 49 (22.3 bits), Expect = 3.1e-33, Sum P(5) = 3.1e-33
Identities = 28/137 (20%), Positives = 49/137 (35%)
Query: 900 TPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADV 959
TP + ++R K+GS S S + + S + S S S + S RS ++
Sbjct: 2110 TPNPA-SKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHS-RSGSSSSSS 2167
Query: 960 NDVARVMKEIFSETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVT 1019
+ + S + SS + + SS +E D K ++ S++
Sbjct: 2168 SSCSSASSS--SSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYD-EESVASLS 2224
Query: 1020 PTVETPPPGFNSPNENP 1036
T + F N P
Sbjct: 2225 TTHDETQDSFQMNNGTP 2241
Score = 48 (22.0 bits), Expect = 6.9e-34, Sum P(6) = 6.9e-34
Identities = 21/85 (24%), Positives = 31/85 (36%)
Query: 1278 STEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSASPER 1337
S G S +D +D S + S S +S + CS S + + S+S
Sbjct: 2121 SKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSH-SRSGSSSSSSSSCSSASSSSSS 2179
Query: 1338 SGPQNSAVGFCDKSEIPSMEAEVAK 1362
S +S+ E S E E K
Sbjct: 2180 SSSSSSSSSSSSSEESDSDEEEAQK 2204
Score = 43 (20.2 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R RE+ S ++ Q E++ E +C+A
Sbjct: 1503 YGWG-RWREILSHGRFKRQLNEQDVEIICRA 1532
Score = 43 (20.2 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 20/81 (24%), Positives = 32/81 (39%)
Query: 495 PSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRR--IQSGEQVPRRRGKKIGLVLPAAS 552
P S P + S + S P+ K RGRR ++ + + R K+ V P +
Sbjct: 2401 PKSLPESGTSSHLTASANGVIVDSQPVLKKRRGRRKNVEGVDVLFINRNKQPNHVNPGIN 2460
Query: 553 DDIPSPGPDPKTNEQPQSESL 573
+ G P N QS+ +
Sbjct: 2461 SCQVAAGISPALN-YTQSQGM 2480
Score = 42 (19.8 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKN 2178
V +P P+ ++ PA + AE +K+
Sbjct: 1658 VWVPEPDHSEVPAEWWDAEADKS 1680
Score = 42 (19.8 bits), Expect = 1.6e-32, Sum P(5) = 1.6e-32
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 661 TPRRRGKRQALG-SPPISDVSAGPESKSNLQSENNSGGLRLS 701
TP G ++ SP +S V K N+ GGL+L+
Sbjct: 2317 TPPLAGVKEEYDQSPQMSKVKKHVREKEFTVKINDEGGLKLT 2358
Score = 39 (18.8 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 592 TAPVPDSVSPSAVKGQSGTID 612
+APVP VK Q+ T D
Sbjct: 1573 SAPVPRGRKGKKVKTQASTFD 1593
Score = 39 (18.8 bits), Expect = 1.1e-36, Sum P(5) = 1.1e-36
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1778 GSSEKDPVSSQSVLEGSKETVAEAGDQMDISI-----MPEKLPE 1816
G S+K P S+ G ++ +A D + S P+ LPE
Sbjct: 2363 GLSQKRPFESEEGALGQQQYLARLRDLQNASETSLVNFPKSLPE 2406
Score = 38 (18.4 bits), Expect = 3.0e-34, Sum P(5) = 3.0e-34
Identities = 24/112 (21%), Positives = 41/112 (36%)
Query: 2065 ASSIPRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSE 2124
AS R +G D+ +++ D++ ++ SSS + G S S
Sbjct: 2114 ASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSS---SSSSCSHSR-SGSSS---SS 2166
Query: 2125 KESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEE 2176
S +SA S + SS ++ E + A+G A +EE
Sbjct: 2167 SSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDEE 2218
Score = 38 (18.4 bits), Expect = 2.0e-32, Sum P(5) = 2.0e-32
Identities = 23/116 (19%), Positives = 45/116 (38%)
Query: 505 PVAP--GS--QSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGP 560
P++P G+ Q+ PS ++ R ++ P KK + + S
Sbjct: 2075 PLSPKNGAPVQNTEHKPSVKIEADRRMVAARTEPLTPNPASKKQRVSKRGSDSSSDSDSD 2134
Query: 561 DPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSA 616
+++ +S S + S S + + SS ++ S S S+ S + SS+
Sbjct: 2135 SDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSS 2190
Score = 38 (18.4 bits), Expect = 4.1e-32, Sum P(5) = 4.1e-32
Identities = 12/80 (15%), Positives = 30/80 (37%)
Query: 1011 SDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPE 1070
SD +CS + + + + G + + + S + S + +S + + E
Sbjct: 2135 SDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEE 2194
Query: 1071 NKAQAGRIENIANSSPDDKS 1090
+ + + A +P K+
Sbjct: 2195 SDSDEEEAQKRAEGTPHIKA 2214
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 448 (162.8 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + + L ++R GKL +LD+L
Sbjct: 743 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGQEILLSLIRSSGKLILLDKL 799
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 800 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 859
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 860 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 919
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 920 TVEEEIIERAKKKM 933
Score = 52 (23.4 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 326 GVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSP----KLKEEG 381
G+++KG G + + R R ++ + EE ++ SD+P ++K++G
Sbjct: 1324 GLEKKGAVTGGEEAKLKKRKPRVKKENKVP-RLKEEHGIELSSPRHSDNPSEEGEVKDDG 1382
Query: 382 LEKS 385
LEKS
Sbjct: 1383 LEKS 1386
Score = 47 (21.6 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ ++E + D + V E E+ +EL
Sbjct: 1006 ENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELE 1065
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1066 EIYMLPRIRSSTKKAQTNDS-DSDTES 1091
Score = 45 (20.9 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1815 PEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P H D P+ E K +G EK P +++ KE+
Sbjct: 1366 PRHSDNPSEEG--EVKDDGLEKSPMKKKQKKKENKEN 1400
Score = 41 (19.5 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 1661 DEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKI 1720
+E ++ SPR +E E D G+ SP+ +++K + S+ K+++
Sbjct: 1357 EEHGIELSSPRHSDNPSEE--GEVKDD-GLEKSPMKKKQKKKENKENKEKQMSSRKDKEG 1413
Query: 1721 DGSLDKDPD 1729
D K D
Sbjct: 1414 DKERKKSKD 1422
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 454 (164.9 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 109/247 (44%), Positives = 143/247 (57%)
Query: 4 VEENLGSIGNSKGRSVHN------SVMELRNICNHPYLSQLHAEEV--------DTLIPK 49
+E+N + SKG + HN ++MELR CNHPYL E++ P
Sbjct: 512 LEKNFSFL--SKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPD 569
Query: 50 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 109
L +++ GKL ++D+LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 570 FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGR 629
Query: 110 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 169
G R A ID+F + DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR
Sbjct: 630 VRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQAR 689
Query: 170 AHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREY 226
HRIGQ + V V R T + E ++ A KLG+ Q I N + E
Sbjct: 690 CHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME- 748
Query: 227 LESLLRE 233
+E LLR+
Sbjct: 749 VEDLLRK 755
Score = 55 (24.4 bits), Expect = 8.5e-36, Sum P(3) = 8.5e-36
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEG 2221
E GP+ + E+E+ E D V + V++ S P+A A D + G V E S G
Sbjct: 1541 EAKAGPSQSHSEEDEEEEDDDNSEVAADVTEGLSG-PKATA--SCDEL-GDVNSERGSLG 1596
Query: 2222 MGGPSPPLVIAEDKTEN 2238
+G P+ + EN
Sbjct: 1597 LGTLKAPMEPGPEGREN 1613
Score = 47 (21.6 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 514 SACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASD---DIPSPGPDPKTN-EQPQ 569
+A STP G +Q+ + VP K + L SD D+P G DP+T+ ++P+
Sbjct: 1870 AAATSTPQPVPAAG--VQAEKAVPN---KSLLDWLRQQSDYTLDVPGFGTDPETHRDKPK 1924
Score = 46 (21.3 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 2201 KAFEPMDVVDGAVALENTSEGMGGPSPPLVI 2231
KAFE A++ + EGM PSPP V+
Sbjct: 1047 KAFEGTPA-SPALSAQVCVEGMLHPSPPAVL 1076
Score = 46 (21.3 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 46/211 (21%), Positives = 77/211 (36%)
Query: 1610 PGADNPEGGVI--VPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDG 1667
P PE VP E M +K D+ S + ++ + +A E I + P +
Sbjct: 1465 PSPSTPESDPSRSVPAELCEAMQQKRDLGSP----APVLPEHRAMEGVISMGLYGPSLHN 1520
Query: 1668 FS---PRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSL 1724
+ P + L+ E G S H E E+ E+ ++ A E + G
Sbjct: 1521 YDVKVPPEQRFI--NLLQEKGMEAKAGPSQSHSEEDEEEEDDDNSEVA-ADVTEGLSGPK 1577
Query: 1725 DKDPDSNLVVLEDSKGSIG-DQMDC-CQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEK 1782
L + +GS+G + + G EN S ++L D E+
Sbjct: 1578 ATASCDELGDVNSERGSLGLGTLKAPMEPGPEGRENHS--LHEENTLQHLPDGPDKYLEE 1635
Query: 1783 DPVSSQSVLEGSKETVAEAGDQMDISIMPEK 1813
+ SS SVL G + + +A ++ EK
Sbjct: 1636 ESKSSTSVLPGEIDDLQDARAPTIAQLLQEK 1666
Score = 44 (20.5 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 33/132 (25%), Positives = 47/132 (35%)
Query: 1803 DQMDI-SIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGV 1861
DQMD + E P + S + P E E ++ D A P+ +E MG+
Sbjct: 1454 DQMDCQNEEAEPSPSTPESDPSRSVPAELCEAMQQKRDLGSPAPVLPEHRAMEGVISMGL 1513
Query: 1862 ---SLGGATV------------MEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMD 1906
SL V EK E A P S + E+E E DN +
Sbjct: 1514 YGPSLHNYDVKVPPEQRFINLLQEKGMEAKAGPSQSHSEEDEEEEDDDNSEVAADVTEGL 1573
Query: 1907 SKECAAEAADQM 1918
S A + D++
Sbjct: 1574 SGPKATASCDEL 1585
Score = 42 (19.8 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 21/110 (19%), Positives = 47/110 (42%)
Query: 1170 AMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEA-IVAGIEVFKPENKTDGDSVEK 1228
A +TA ++ + + V G+ +D V G +V G + +++ + E
Sbjct: 1130 AQDTAERSELCLRRAVRGEGSNVDESVTGNREHRQGRXMLVPGNHGYWLQDEVFRRASEM 1189
Query: 1229 LEDTVD-DHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMK 1277
D+V+ + + L+ SP S + P + + +S+ P L+++
Sbjct: 1190 --DSVNKEMQKSRSLVAMSPSPSSLPKVMRPNSIWQKASRWPQVMVLLLQ 1237
Score = 39 (18.8 bits), Expect = 8.5e-36, Sum P(3) = 8.5e-36
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 757 PATHDSSSQPSGSTPAQV-PSMDLGNVASDTKEVLSENSSSKG 798
P+ S PS S PA++ +M VL E+ + +G
Sbjct: 1465 PSPSTPESDPSRSVPAELCEAMQQKRDLGSPAPVLPEHRAMEG 1507
Score = 39 (18.8 bits), Expect = 8.5e-36, Sum P(3) = 8.5e-36
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 761 DSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPIL 804
+ ++PS STP PS +V ++ E + + G P+L
Sbjct: 1460 NEEAEPSPSTPESDPSR---SVPAELCEAMQQKRDL-GSPAPVL 1499
Score = 39 (18.8 bits), Expect = 8.0e-35, Sum P(4) = 8.0e-35
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 1956 DPVNSSVTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTE 1998
+P S+ + S+ AE C+ + R G A + E E
Sbjct: 1464 EPSPSTPESDPSRSVPAELCEAMQQKRDLGSPAPVLPEHRAME 1506
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 447 (162.4 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 106/233 (45%), Positives = 139/233 (59%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 445 MKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 499
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA--L 118
K+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R
Sbjct: 500 KMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREKKEA 559
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA RAHRIGQK+
Sbjct: 560 IEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKP 619
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V V R T TVEE++ AE KL + + I G D ++ + E L+ +
Sbjct: 620 VRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 672
Score = 45 (20.9 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P +A EE+ + EP+ + + E KE
Sbjct: 814 IGYKVPRNPDIPNPAVAQREEQKKIDGAEPL--TPEETEEKE 853
Score = 37 (18.1 bits), Expect = 8.1e-36, Sum P(2) = 8.1e-36
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPD 1729
++ ++ P+++ +++KIDG+ P+
Sbjct: 820 RNPDIPNPAVAQREEQKKIDGAEPLTPE 847
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 432 (157.1 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 91/187 (48%), Positives = 123/187 (65%)
Query: 19 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKLEMLDRLLPKLKATDH 77
+ N +M LR CNHPYL + +D + + + +V GK +LDR+LP+LK H
Sbjct: 538 LQNIMMLLRKCCNHPYLIEY---PIDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGH 594
Query: 78 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137
+VL FS MTR+LD++ DY F+ + + RLDG S +R I FN D FIFL+S R
Sbjct: 595 KVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNT-DPDVFIFLVSTR 653
Query: 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--R 195
AGG+G+NL AADTVII+D+DWNPQ DLQAQ R HRIGQ R V+V R T T+++++ R
Sbjct: 654 AGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVER 713
Query: 196 ASAEHKL 202
A+A+ KL
Sbjct: 714 AAAKRKL 720
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 452 (164.2 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 105/231 (45%), Positives = 138/231 (59%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 436 MKDIDV-LNSSGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVGNSG 490
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ LD+LL ++K RVL FS MTRLLD++EDY ++ Y Y RLDG T +R ID
Sbjct: 491 KMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAID 550
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA RAHRIGQK+ V
Sbjct: 551 AFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 610
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V R T TVEE++ AE KL + + I G D ++ + E L+ +
Sbjct: 611 VFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 661
Score = 39 (18.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 1702 KSEELGLPSLSSATKEEKIDGS 1723
++ E+ P+++ +++KIDG+
Sbjct: 809 RNPEIPNPAIAQREEQKKIDGA 830
Score = 39 (18.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESK 2196
+ VP + P +A EE+ + EP+ ++ + K
Sbjct: 803 IGYKVPRNPEIPNPAIAQREEQKKIDGAEPLTPQETEEKDK 843
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 433 (157.5 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 91/194 (46%), Positives = 128/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + ++ + + L ++R GKL +LD+L
Sbjct: 732 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDDNEFYNKQEALQHLIRSSGKLILLDKL 788
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 789 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 848
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 849 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 908
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 909 SVEEDILERAKKKM 922
Score = 75 (31.5 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 41/184 (22%), Positives = 77/184 (41%)
Query: 1114 QSRNQNNP----EVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTP 1169
++RN+ N ++K E SS P+ + ++ N V++ L KT
Sbjct: 1327 KTRNKKNKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNKDEIVSVKHLHKKIKT---EK 1383
Query: 1170 AMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKL 1229
E P DI I+K E+ + K K L E K E K D +++
Sbjct: 1384 ENEEKPEPDIGIKKEAEEKR---ETKEKENKRELKRE---------KKE-KEDKKELKEK 1430
Query: 1230 EDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL-ETPLIMKSTEGP-SVSMK 1287
++ + VKE + + + + + E S K+PL +TP+ + +T P +S +
Sbjct: 1431 DNKEKRENKVKESTQKEKEVKEEKVNEIKSENKEKSKKIPLLDTPVHITATSEPVPISEE 1490
Query: 1288 ADDV 1291
++++
Sbjct: 1491 SEEL 1494
Score = 52 (23.4 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 1110 KHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTP 1169
K N+ ++ E+K + +P SE S E ++E N V++ L KT
Sbjct: 1331 KKNKMKASKIKEEIKSDSSPQPSEK--SDEDDDEED--NKDEIVSVKHLHKKIKT---EK 1383
Query: 1170 AMETAPGFDIPIEKGVEQ 1187
E P DI I+K E+
Sbjct: 1384 ENEEKPEPDIGIKKEAEE 1401
Score = 51 (23.0 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 23/136 (16%), Positives = 61/136 (44%)
Query: 267 KQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDD--------LKALYEAMKIYDAPK 318
K R ++ K+ + +D P P S D++ +K L++ +K +
Sbjct: 1327 KTRNKKNKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNKDEIVSVKHLHKKIKTEKENE 1386
Query: 319 TGVSPNVGVKRKGEHLGALDTQHYGRG-KRAREVRSYEEQWTEEEFEKMCQAESSDSPKL 377
P++G+K++ E + R KR ++ + +++ E++ ++ + + +S +
Sbjct: 1387 EKPEPDIGIKKEAEEKRETKEKENKRELKREKKEKEDKKELKEKDNKEKRENKVKESTQK 1446
Query: 378 KEEGLEKSLPTVVSSS 393
++E E+ + + S +
Sbjct: 1447 EKEVKEEKVNEIKSEN 1462
Score = 47 (21.6 bits), Expect = 2.6e-31, Sum P(4) = 2.6e-31
Identities = 60/258 (23%), Positives = 98/258 (37%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSH----SPVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH +P+H
Sbjct: 1167 GCIKALKDNSSGQERAGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELAPLH 1217
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQS 1751
EE + TK D K+ DSNL+V E GS I D +
Sbjct: 1218 KSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLVGIYEYGYGSWEMIKMDPDLSLT 1277
Query: 1752 GVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSV-LEGSKETVAEAGDQMDISIM 1810
++P++ D + L + KD ++ L G+ + +
Sbjct: 1278 QKILPDD-PDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNSKRRKTRNKKNKMK 1336
Query: 1811 PEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVME 1870
K+ E + +S P EK S++D D +ED K+ +V L E
Sbjct: 1337 ASKIKEEIKSDSS-PQPSEK---SDEDDD-----EEDNKDEIVSVKH-----LHKKIKTE 1382
Query: 1871 KSSEDLATPPLSLANEEE 1888
K +E+ P + + E E
Sbjct: 1383 KENEEKPEPDIGIKKEAE 1400
Score = 46 (21.3 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 27/114 (23%), Positives = 46/114 (40%)
Query: 1713 SATKEEKIDGSLDKDPDSNLVV-LEDSKGSIGDQMDCCQSGVVVPE-NLSDFCQPSSSL- 1769
S +K K+D +D SNL L+DS+G D + + S++ SS
Sbjct: 1686 SDSKHRKLDDHRSRDHRSNLEGNLKDSRGH-SDHRSHSDHRIHSDHRSTSEYSHHKSSRD 1744
Query: 1770 ----APWEA--KIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEH 1817
+ W+ + GS + P+ +S GS+ + + S + PEH
Sbjct: 1745 YRYHSDWQMDHRASGSGPRSPLDQRSPY-GSRSPLGHRSP-FEHSSDHKSTPEH 1796
Score = 45 (20.9 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 401
KR +V+ ++ E + EK+ + +S + K K+ L + + ++S P S E
Sbjct: 1435 KRENKVKESTQKEKEVKEEKVNEIKSENKEKSKKIPLLDTPVHITATSEPVPISEE 1490
Score = 37 (18.1 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1244 HRSPDHSDMVIGNV 1257
HRS DH + GN+
Sbjct: 1696 HRSRDHRSNLEGNL 1709
Score = 37 (18.1 bits), Expect = 7.9e-32, Sum P(4) = 7.9e-32
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1989 ETVQEEEKTELSCEKQ 2004
ET ++E K EL EK+
Sbjct: 1404 ETKEKENKRELKREKK 1419
Score = 37 (18.1 bits), Expect = 7.9e-32, Sum P(4) = 7.9e-32
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 2182 DKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKTE 2237
+KE V++I+S+ E P+ +D V + TSE P+ I+E+ E
Sbjct: 1447 EKEVKEEKVNEIKSENKEKSKKIPL--LDTPVHITATSE-------PVPISEESEE 1493
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 21/85 (24%), Positives = 30/85 (35%)
Query: 1773 EAKIDGSSEKDPVSSQSV-LEGSKETVAEAGDQMDISIMPEKLPEHLDIP--ASLATPEE 1829
E K D S + S + E +K+ + + I EK E P EE
Sbjct: 1343 EIKSDSSPQPSEKSDEDDDEEDNKDEIVSV-KHLHKKIKTEKENEEKPEPDIGIKKEAEE 1401
Query: 1830 KTEGSEKDPDSSFAAQEDPKESVVE 1854
K E EK+ ++ KE E
Sbjct: 1402 KRETKEKENKRELKREKKEKEDKKE 1426
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 433 (157.5 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 91/194 (46%), Positives = 128/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + ++ + + L ++R GKL +LD+L
Sbjct: 732 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDDNEFYNKQEALQHLIRSSGKLILLDKL 788
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 789 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 848
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 849 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 908
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 909 SVEEDILERAKKKM 922
Score = 75 (31.5 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 41/184 (22%), Positives = 77/184 (41%)
Query: 1114 QSRNQNNP----EVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTP 1169
++RN+ N ++K E SS P+ + ++ N V++ L KT
Sbjct: 1328 KTRNKKNKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNKDEIVSVKHLHKKIKT---EK 1384
Query: 1170 AMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKL 1229
E P DI I+K E+ + K K L E K E K D +++
Sbjct: 1385 ENEEKPEPDIGIKKEAEEKR---ETKEKENKRELKRE---------KKE-KEDKKELKEK 1431
Query: 1230 EDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL-ETPLIMKSTEGP-SVSMK 1287
++ + VKE + + + + + E S K+PL +TP+ + +T P +S +
Sbjct: 1432 DNKEKRENKVKESTQKEKEVKEEKVNEIKSENKEKSKKIPLLDTPVHITATSEPVPISEE 1491
Query: 1288 ADDV 1291
++++
Sbjct: 1492 SEEL 1495
Score = 52 (23.4 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 1110 KHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTP 1169
K N+ ++ E+K + +P SE S E ++E N V++ L KT
Sbjct: 1332 KKNKMKASKIKEEIKSDSSPQPSEK--SDEDDDEED--NKDEIVSVKHLHKKIKT---EK 1384
Query: 1170 AMETAPGFDIPIEKGVEQ 1187
E P DI I+K E+
Sbjct: 1385 ENEEKPEPDIGIKKEAEE 1402
Score = 51 (23.0 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 23/136 (16%), Positives = 61/136 (44%)
Query: 267 KQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDD--------LKALYEAMKIYDAPK 318
K R ++ K+ + +D P P S D++ +K L++ +K +
Sbjct: 1328 KTRNKKNKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNKDEIVSVKHLHKKIKTEKENE 1387
Query: 319 TGVSPNVGVKRKGEHLGALDTQHYGRG-KRAREVRSYEEQWTEEEFEKMCQAESSDSPKL 377
P++G+K++ E + R KR ++ + +++ E++ ++ + + +S +
Sbjct: 1388 EKPEPDIGIKKEAEEKRETKEKENKRELKREKKEKEDKKELKEKDNKEKRENKVKESTQK 1447
Query: 378 KEEGLEKSLPTVVSSS 393
++E E+ + + S +
Sbjct: 1448 EKEVKEEKVNEIKSEN 1463
Score = 47 (21.6 bits), Expect = 2.6e-31, Sum P(4) = 2.6e-31
Identities = 60/258 (23%), Positives = 98/258 (37%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSH----SPVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH +P+H
Sbjct: 1168 GCIKALKDNSSGQERAGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELAPLH 1218
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQS 1751
EE + TK D K+ DSNL+V E GS I D +
Sbjct: 1219 KSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLVGIYEYGYGSWEMIKMDPDLSLT 1278
Query: 1752 GVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSV-LEGSKETVAEAGDQMDISIM 1810
++P++ D + L + KD ++ L G+ + +
Sbjct: 1279 QKILPDD-PDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNSKRRKTRNKKNKMK 1337
Query: 1811 PEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVME 1870
K+ E + +S P EK S++D D +ED K+ +V L E
Sbjct: 1338 ASKIKEEIKSDSS-PQPSEK---SDEDDD-----EEDNKDEIVSVKH-----LHKKIKTE 1383
Query: 1871 KSSEDLATPPLSLANEEE 1888
K +E+ P + + E E
Sbjct: 1384 KENEEKPEPDIGIKKEAE 1401
Score = 46 (21.3 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 27/114 (23%), Positives = 46/114 (40%)
Query: 1713 SATKEEKIDGSLDKDPDSNLVV-LEDSKGSIGDQMDCCQSGVVVPE-NLSDFCQPSSSL- 1769
S +K K+D +D SNL L+DS+G D + + S++ SS
Sbjct: 1687 SDSKHRKLDDHRSRDHRSNLEGNLKDSRGH-SDHRSHSDHRIHSDHRSTSEYSHHKSSRD 1745
Query: 1770 ----APWEA--KIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEH 1817
+ W+ + GS + P+ +S GS+ + + S + PEH
Sbjct: 1746 YRYHSDWQMDHRASGSGPRSPLDQRSPY-GSRSPLGHRSP-FEHSSDHKSTPEH 1797
Score = 45 (20.9 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 401
KR +V+ ++ E + EK+ + +S + K K+ L + + ++S P S E
Sbjct: 1436 KRENKVKESTQKEKEVKEEKVNEIKSENKEKSKKIPLLDTPVHITATSEPVPISEE 1491
Score = 37 (18.1 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1244 HRSPDHSDMVIGNV 1257
HRS DH + GN+
Sbjct: 1697 HRSRDHRSNLEGNL 1710
Score = 37 (18.1 bits), Expect = 8.0e-32, Sum P(4) = 8.0e-32
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1989 ETVQEEEKTELSCEKQ 2004
ET ++E K EL EK+
Sbjct: 1405 ETKEKENKRELKREKK 1420
Score = 37 (18.1 bits), Expect = 8.0e-32, Sum P(4) = 8.0e-32
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 2182 DKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKTE 2237
+KE V++I+S+ E P+ +D V + TSE P+ I+E+ E
Sbjct: 1448 EKEVKEEKVNEIKSENKEKSKKIPL--LDTPVHITATSE-------PVPISEESEE 1494
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 21/85 (24%), Positives = 30/85 (35%)
Query: 1773 EAKIDGSSEKDPVSSQSV-LEGSKETVAEAGDQMDISIMPEKLPEHLDIP--ASLATPEE 1829
E K D S + S + E +K+ + + I EK E P EE
Sbjct: 1344 EIKSDSSPQPSEKSDEDDDEEDNKDEIVSV-KHLHKKIKTEKENEEKPEPDIGIKKEAEE 1402
Query: 1830 KTEGSEKDPDSSFAAQEDPKESVVE 1854
K E EK+ ++ KE E
Sbjct: 1403 KRETKEKENKRELKREKKEKEDKKE 1427
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 448 (162.8 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + + L ++R GKL +LD+L
Sbjct: 712 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGQEVLLSLIRSSGKLILLDKL 768
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 769 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 828
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 829 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 888
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 889 TVEEEIIERAKKKM 902
Score = 50 (22.7 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 46/190 (24%), Positives = 73/190 (38%)
Query: 1577 GPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPG-ADNP-EGGVIVPEHKSENMGEKDD 1634
G A L K + + K + DEHG P +DNP E G + + ++ +K
Sbjct: 1303 GGEEAKLKKRKPRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQ 1362
Query: 1635 ISSEHAFGSSLVL---QDKASEAEIGDRID--EPQVDGFSPRSMSGVVDELVDEAGDHMG 1689
E+ + +DK + E D E + G +S S + H+
Sbjct: 1363 KKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKKPKGGDAKSSS---KSKRSQGPVHIT 1419
Query: 1690 VSHSPVHVVEREKSEELGLPSLSSATKE----EKIDGSLDKDPDSNLVV---LEDSKG-- 1740
PV + E E ++L + S + +K LDK PD L V LE ++
Sbjct: 1420 AGSEPVPIGEDE-DDDLDQETFSICKERMRPVKKALKQLDK-PDKGLNVQEQLEHTRNCL 1477
Query: 1741 -SIGDQMDCC 1749
IGD++ C
Sbjct: 1478 LKIGDRIAEC 1487
Score = 49 (22.3 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 327 VKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSP----KLKEEGL 382
+++KG G + + R R ++ + E + +E + SD+P ++K++GL
Sbjct: 1295 LEKKGAVTGGEEAKLKKRKPRVKK-ENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDGL 1353
Query: 383 EKS 385
EKS
Sbjct: 1354 EKS 1356
Score = 47 (21.6 bits), Expect = 6.7e-34, Sum P(4) = 6.7e-34
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ ++E + D + V E E+ +EL
Sbjct: 975 ENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELE 1034
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1035 EIYMLPRIRSSTKKAQTNDS-DSDTES 1060
Score = 45 (20.9 bits), Expect = 6.7e-34, Sum P(4) = 6.7e-34
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1815 PEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P H D P+ E K +G EK P +++ KE+
Sbjct: 1336 PRHSDNPSEEG--EVKDDGLEKSPMKKKQKKKENKEN 1370
Score = 39 (18.8 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 1038 ELTGTKNDASVRGDHTPVSGH 1058
E +G+ D+ + HTP + H
Sbjct: 1555 EASGSSRDSLISQSHTPHNLH 1575
Score = 37 (18.1 bits), Expect = 6.7e-34, Sum P(4) = 6.7e-34
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1992 QEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVP 2034
+E +K++ EK+P G SK + V + G VP
Sbjct: 1385 KERKKSKDKKEKKPKGGDAKSSSKSKRSQGPVHITA-GSEPVP 1426
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 448 (162.8 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + + L ++R GKL +LD+L
Sbjct: 746 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGQEVLLSLIRSSGKLILLDKL 802
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 803 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 862
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 863 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 922
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 923 TVEEEIIERAKKKM 936
Score = 51 (23.0 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 46/191 (24%), Positives = 76/191 (39%)
Query: 1577 GPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPG-ADNP-EGGVIVPEHKSENMGEKDD 1634
G A L K + + K + DEHG P +DNP E G + + ++ +K
Sbjct: 1337 GGEEAKLKKRKPRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQ 1396
Query: 1635 ISSEHAFGSSLVL---QDKASEAE---IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHM 1688
E+ + +DK + E D+ ++P+ G +S S + H+
Sbjct: 1397 KKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPK--GGDAKSSS---KSKRSQGPVHI 1451
Query: 1689 GVSHSPVHVVEREKSEELGLPSLSSATKE----EKIDGSLDKDPDSNLVV---LEDSKG- 1740
PV + E E ++L + S + +K LDK PD L V LE ++
Sbjct: 1452 TAGSEPVPIGEDE-DDDLDQETFSICKERMRPVKKALKQLDK-PDKGLNVQEQLEHTRNC 1509
Query: 1741 --SIGDQMDCC 1749
IGD++ C
Sbjct: 1510 LLKIGDRIAEC 1520
Score = 51 (23.0 bits), Expect = 5.9e-36, Sum P(3) = 5.9e-36
Identities = 23/104 (22%), Positives = 44/104 (42%)
Query: 2111 EEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGG------GVVSIPVPEEA 2164
+EK K +KE S ++ KG DA+ SS++ G G +P+ E+
Sbjct: 1405 KEKQMSSRKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDE 1464
Query: 2165 DGPASFLAAEEEKNECSDK-EPVGSSVSQIESKEPEAKAFEPMD 2207
D +E + C ++ PV ++ Q++ + E ++
Sbjct: 1465 DDDLD----QETFSICKERMRPVKKALKQLDKPDKGLNVQEQLE 1504
Score = 49 (22.3 bits), Expect = 5.9e-36, Sum P(3) = 5.9e-36
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 327 VKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSP----KLKEEGL 382
+++KG G + + R R ++ + E + +E + SD+P ++K++GL
Sbjct: 1329 LEKKGAVTGGEEAKLKKRKPRVKK-ENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDGL 1387
Query: 383 EKS 385
EKS
Sbjct: 1388 EKS 1390
Score = 48 (22.0 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 1661 DEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKI 1720
DE V+ SPR +E E D G+ SP+ +++K + S+ K+++
Sbjct: 1361 DEHGVEFSSPRHSDNPSEE--GEVKDD-GLEKSPMKKKQKKKENKENKEKQMSSRKDKEG 1417
Query: 1721 DGSLDKDPDSNLVVLEDSKGSIGDQMDCCQS 1751
D K D E KG GD +S
Sbjct: 1418 DKERKKSKDKK----EKPKG--GDAKSSSKS 1442
Score = 47 (21.6 bits), Expect = 4.0e-35, Sum P(4) = 4.0e-35
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ ++E + D + V E E+ +EL
Sbjct: 1009 ENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELE 1068
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1069 EIYMLPRIRSSTKKAQTNDS-DSDTES 1094
Score = 46 (21.3 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 31/148 (20%), Positives = 52/148 (35%)
Query: 1029 FNSP--NENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSP 1086
F+SP ++NP E K+D + +P+ K + K ENK + +
Sbjct: 1367 FSSPRHSDNPSEEGEVKDDGL---EKSPM-------KKKQKKKENKENKEKQMSSRKDKE 1416
Query: 1087 DDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAP--ASTEAFEQE 1144
DK + + P G D +++S+ + E P+ + E F
Sbjct: 1417 GDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDEDDDLDQETFSIC 1476
Query: 1145 KVTNTSSFVNLADLSSDDKTCSVTPAME 1172
K L L DK +V +E
Sbjct: 1477 KERMRPVKKALKQLDKPDKGLNVQEQLE 1504
Score = 45 (20.9 bits), Expect = 4.0e-35, Sum P(4) = 4.0e-35
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1815 PEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P H D P+ E K +G EK P +++ KE+
Sbjct: 1370 PRHSDNPSEEG--EVKDDGLEKSPMKKKQKKKENKEN 1404
Score = 39 (18.8 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 1038 ELTGTKNDASVRGDHTPVSGH 1058
E +G+ D+ + HTP + H
Sbjct: 1586 EASGSSRDSLISQSHTPHNLH 1606
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 454 (164.9 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 109/247 (44%), Positives = 143/247 (57%)
Query: 4 VEENLGSIGNSKGRSVHN------SVMELRNICNHPYLSQLHAEEV--------DTLIPK 49
+E+N + SKG + HN ++MELR CNHPYL E++ P
Sbjct: 512 LEKNFSFL--SKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPD 569
Query: 50 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 109
L +++ GKL ++D+LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 570 FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGR 629
Query: 110 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 169
G R A ID+F + DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR
Sbjct: 630 VRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQAR 689
Query: 170 AHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREY 226
HRIGQ + V V R T + E ++ A KLG+ Q I N + E
Sbjct: 690 CHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME- 748
Query: 227 LESLLRE 233
+E LLR+
Sbjct: 749 VEDLLRK 755
Score = 53 (23.7 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEG 2221
E GP+ + E+E+ E D V + V++ S P+A A D + G ++ S
Sbjct: 1541 EAKAGPSQSHSEEDEEEEDDDNSEVAADVTEGLSG-PKATA--SCDELGG----QSQSRA 1593
Query: 2222 MGGPSPPL 2229
P+PPL
Sbjct: 1594 FSLPAPPL 1601
Score = 47 (21.6 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 514 SACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASD---DIPSPGPDPKTN-EQPQ 569
+A STP G +Q+ + VP K + L SD D+P G DP+T+ ++P+
Sbjct: 1872 AAATSTPQPVPAAG--VQAEKAVPN---KSLLDWLRQQSDYTLDVPGFGTDPETHRDKPK 1926
Score = 46 (21.3 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 2201 KAFEPMDVVDGAVALENTSEGMGGPSPPLVI 2231
KAFE A++ + EGM PSPP V+
Sbjct: 1047 KAFEGTPA-SPALSAQVCVEGMLHPSPPAVL 1076
Score = 46 (21.3 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
Identities = 24/83 (28%), Positives = 35/83 (42%)
Query: 1114 QSRNQNNPEVKGEETPVSSEAPAS-TEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAME 1172
QS ++ + E EE +SE A TE K T +S L S + S+ PA
Sbjct: 1548 QSHSEEDEE---EEDDDNSEVAADVTEGLSGPKAT--ASCDELGG-QSQSRAFSL-PAPP 1600
Query: 1173 TAPGFDIPIEKGVEQSGTEIDAK 1195
P+ GVE G E++ +
Sbjct: 1601 LGAAGAQPLHAGVEAWGQEVEGQ 1623
Score = 44 (20.5 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 33/132 (25%), Positives = 47/132 (35%)
Query: 1803 DQMDI-SIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGV 1861
DQMD + E P + S + P E E ++ D A P+ +E MG+
Sbjct: 1454 DQMDCQNEEAEPSPSTPESDPSRSVPAELCEAMQQKRDLGSPAPVLPEHRAMEGVISMGL 1513
Query: 1862 ---SLGGATV------------MEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMD 1906
SL V EK E A P S + E+E E DN +
Sbjct: 1514 YGPSLHNYDVKVPPEQRFINLLQEKGMEAKAGPSQSHSEEDEEEEDDDNSEVAADVTEGL 1573
Query: 1907 SKECAAEAADQM 1918
S A + D++
Sbjct: 1574 SGPKATASCDEL 1585
Score = 42 (19.8 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 21/110 (19%), Positives = 47/110 (42%)
Query: 1170 AMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEA-IVAGIEVFKPENKTDGDSVEK 1228
A +TA ++ + + V G+ +D V G +V G + +++ + E
Sbjct: 1130 AQDTAERSELCLRRAVRGEGSNVDESVTGNREHRQGRXMLVPGNHGYWLQDEVFRRASEM 1189
Query: 1229 LEDTVD-DHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMK 1277
D+V+ + + L+ SP S + P + + +S+ P L+++
Sbjct: 1190 --DSVNKEMQKSRSLVAMSPSPSSLPKVMRPNSIWQKASRWPQVMVLLLQ 1237
Score = 39 (18.8 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 757 PATHDSSSQPSGSTPAQV-PSMDLGNVASDTKEVLSENSSSKG 798
P+ S PS S PA++ +M VL E+ + +G
Sbjct: 1465 PSPSTPESDPSRSVPAELCEAMQQKRDLGSPAPVLPEHRAMEG 1507
Score = 39 (18.8 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 761 DSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPIL 804
+ ++PS STP PS +V ++ E + + G P+L
Sbjct: 1460 NEEAEPSPSTPESDPSR---SVPAELCEAMQQKRDL-GSPAPVL 1499
Score = 39 (18.8 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 448 LPAPSGTVKVEKDAMTGQSTSASASLP 474
L P T D + GQS S + SLP
Sbjct: 1573 LSGPKATASC--DELGGQSQSRAFSLP 1597
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(4) = 1.3e-34
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 1956 DPVNSSVTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTE 1998
+P S+ + S+ AE C+ + R G A + E E
Sbjct: 1464 EPSPSTPESDPSRSVPAELCEAMQQKRDLGSPAPVLPEHRAME 1506
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 448 (162.8 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + + L ++R GKL +LD+L
Sbjct: 756 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGQEVLLSLIRSSGKLILLDKL 812
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 813 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 872
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 873 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 932
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 933 TVEEEIIERAKKKM 946
Score = 51 (23.0 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 46/191 (24%), Positives = 76/191 (39%)
Query: 1577 GPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPG-ADNP-EGGVIVPEHKSENMGEKDD 1634
G A L K + + K + DEHG P +DNP E G + + ++ +K
Sbjct: 1346 GGEEAKLKKRKPRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQ 1405
Query: 1635 ISSEHAFGSSLVL---QDKASEAE---IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHM 1688
E+ + +DK + E D+ ++P+ G +S S + H+
Sbjct: 1406 KKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPK--GGDAKSSS---KSKRSQGPVHI 1460
Query: 1689 GVSHSPVHVVEREKSEELGLPSLSSATKE----EKIDGSLDKDPDSNLVV---LEDSKG- 1740
PV + E E ++L + S + +K LDK PD L V LE ++
Sbjct: 1461 TAGSEPVPIGEDE-DDDLDQETFSICKERMRPVKKALKQLDK-PDKGLNVQEQLEHTRNC 1518
Query: 1741 --SIGDQMDCC 1749
IGD++ C
Sbjct: 1519 LLKIGDRIAEC 1529
Score = 51 (23.0 bits), Expect = 6.1e-36, Sum P(3) = 6.1e-36
Identities = 23/104 (22%), Positives = 44/104 (42%)
Query: 2111 EEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGG------GVVSIPVPEEA 2164
+EK K +KE S ++ KG DA+ SS++ G G +P+ E+
Sbjct: 1414 KEKQMSSRKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDE 1473
Query: 2165 DGPASFLAAEEEKNECSDK-EPVGSSVSQIESKEPEAKAFEPMD 2207
D +E + C ++ PV ++ Q++ + E ++
Sbjct: 1474 DDDLD----QETFSICKERMRPVKKALKQLDKPDKGLNVQEQLE 1513
Score = 49 (22.3 bits), Expect = 6.1e-36, Sum P(3) = 6.1e-36
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 327 VKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSP----KLKEEGL 382
+++KG G + + R R ++ + E + +E + SD+P ++K++GL
Sbjct: 1338 LEKKGAVTGGEEAKLKKRKPRVKK-ENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKDDGL 1396
Query: 383 EKS 385
EKS
Sbjct: 1397 EKS 1399
Score = 48 (22.0 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 1661 DEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKI 1720
DE V+ SPR +E E D G+ SP+ +++K + S+ K+++
Sbjct: 1370 DEHGVEFSSPRHSDNPSEE--GEVKDD-GLEKSPMKKKQKKKENKENKEKQMSSRKDKEG 1426
Query: 1721 DGSLDKDPDSNLVVLEDSKGSIGDQMDCCQS 1751
D K D E KG GD +S
Sbjct: 1427 DKERKKSKDKK----EKPKG--GDAKSSSKS 1451
Score = 47 (21.6 bits), Expect = 4.1e-35, Sum P(4) = 4.1e-35
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ ++E + D + V E E+ +EL
Sbjct: 1019 ENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELE 1078
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1079 EIYMLPRIRSSTKKAQTNDS-DSDTES 1104
Score = 46 (21.3 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 31/148 (20%), Positives = 52/148 (35%)
Query: 1029 FNSP--NENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSP 1086
F+SP ++NP E K+D + +P+ K + K ENK + +
Sbjct: 1376 FSSPRHSDNPSEEGEVKDDGL---EKSPM-------KKKQKKKENKENKEKQMSSRKDKE 1425
Query: 1087 DDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAP--ASTEAFEQE 1144
DK + + P G D +++S+ + E P+ + E F
Sbjct: 1426 GDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDEDDDLDQETFSIC 1485
Query: 1145 KVTNTSSFVNLADLSSDDKTCSVTPAME 1172
K L L DK +V +E
Sbjct: 1486 KERMRPVKKALKQLDKPDKGLNVQEQLE 1513
Score = 45 (20.9 bits), Expect = 4.1e-35, Sum P(4) = 4.1e-35
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1815 PEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
P H D P+ E K +G EK P +++ KE+
Sbjct: 1379 PRHSDNPSEEG--EVKDDGLEKSPMKKKQKKKENKEN 1413
Score = 39 (18.8 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 1038 ELTGTKNDASVRGDHTPVSGH 1058
E +G+ D+ + HTP + H
Sbjct: 1595 EASGSSRDSLISQSHTPHNLH 1615
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 451 (163.8 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 105/231 (45%), Positives = 138/231 (59%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L + G
Sbjct: 356 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDTHL---ITNSG 410
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LL KL+ RVL FS MTRLLD++EDY ++ Y Y RLDG T +R ID
Sbjct: 411 KMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAID 470
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
FN +S FIF+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQK+ V
Sbjct: 471 TFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 530
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYLESL 230
V R T TVEE++ AE KL + + I G D ++ + E L+ +
Sbjct: 531 VFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKDEMLQMI 581
Score = 38 (18.4 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 1124 KGEETPVSSEAPASTEAFEQEKVTNTSSFVN 1154
K E+ + P + E E+++ T F N
Sbjct: 741 KEEQKKIDESMPLNPEETEEKEKLLTQGFTN 771
Score = 38 (18.4 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P + +EE+ + + P+ + E KE
Sbjct: 723 IGYKVPRNPDLPNAAQVQKEEQKKIDESMPLNPE--ETEEKE 762
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 448 (162.8 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH YL + EE + + L ++R GKL +LD+L
Sbjct: 743 GTRGSTSG--FLNIVMELKKCCNHCYLIK-PPEENERENGQEVLLSLIRSSGKLILLDKL 799
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 800 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 859
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 860 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 919
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 920 TVEEEIIERAKKKM 933
Score = 47 (21.6 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ ++E + D + V E E+ +EL
Sbjct: 1006 ENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELE 1065
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1066 EIYMLPRIRSSTKKAQTNDS-DSDTES 1091
Score = 42 (19.8 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 1577 GPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPG-ADNP--EGGV 1619
G A L K + + K + DEHG P +DNP EG V
Sbjct: 1333 GGEEAKLKKRKPRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEV 1378
>UNIPROTKB|Q9NW36 [details] [associations]
symbol:HELLS "cDNA FLJ10339 fis, clone NT2RM2000740, weakly
similar to POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL138759 UniGene:Hs.655830
HGNC:HGNC:4861 ChiTaRS:HELLS EMBL:AK001201 IPI:IPI00012073
SMR:Q9NW36 STRING:Q9NW36 Ensembl:ENST00000371327
HOGENOM:HOG000198825 HOVERGEN:HBG072129 Uniprot:Q9NW36
Length = 310
Score = 409 (149.0 bits), Expect = 1.6e-36, P = 1.6e-36
Identities = 86/183 (46%), Positives = 119/183 (65%)
Query: 23 VMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKLEMLDRLLPKLKATDHRVLF 81
+M LR CNHPYL + +D + + + +V GK +LDR+LP+LK H+VL
Sbjct: 1 MMLLRKCCNHPYLIEY---PIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLL 57
Query: 82 FSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 141
FS MT +LD++ DY + + + RLDG S +R + FN D FIFL+S RAGG+
Sbjct: 58 FSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGGL 116
Query: 142 GVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--RASAE 199
G+NL AADTVII+D+DWNPQ DLQAQ R HRIGQ + V+V R T T+++++ RA+A+
Sbjct: 117 GINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAK 176
Query: 200 HKL 202
KL
Sbjct: 177 RKL 179
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 450 (163.5 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 100/222 (45%), Positives = 137/222 (61%)
Query: 9 GSIGNSKGRS-VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 67
GS G+ + ++ + N +M+LR CNHPYL AE +L V KL++LD+
Sbjct: 454 GSNGSKESKTRLLNIMMQLRKCCNHPYLFD-GAEPGPPYTTDEHL---VYNAAKLQVLDK 509
Query: 68 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127
LL KLK RVL FS M+RLLD++EDY F+ Y Y R+DG T+ DR ID +N DS
Sbjct: 510 LLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDS 569
Query: 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187
F+FLL+ RAGG+G+NL +AD V+++D+DWNPQ DLQA RAHRIGQK+ V V R T
Sbjct: 570 KKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTD 629
Query: 188 QTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLES 229
+VEE++ A KL + +Q + N TS + + +S
Sbjct: 630 NSVEEKILERATQKLRL-DQLVIQ---QNRTSLKKKENKADS 667
Score = 54 (24.1 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 286 TDGEPLPPLP----SRLVTDDDLKALYEAMKIYDAPKTGVSPNV 325
T P P P S + LK LYE +++ A KTG P +
Sbjct: 792 TPSHPRMPKPHVFHSHQLQPPQLKVLYEKERMWTAKKTGYVPTM 835
Score = 39 (18.8 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 18/85 (21%), Positives = 35/85 (41%)
Query: 1647 LQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEEL 1706
+Q A E G ++E V ++ S + E +++ ++ + + ++R K ++
Sbjct: 907 IQAIARELAPGKTLEE--VRAYAKAFWSNI--ERIEDYEKYLKIIENEEEKIKRVKMQQE 962
Query: 1707 GLPSLSSATKEEKIDGSLDKDPDSN 1731
L S K D L P SN
Sbjct: 963 ALRRKLSEYKNPFFDLKLKHPPSSN 987
Score = 39 (18.8 bits), Expect = 5.7e-35, Sum P(3) = 5.7e-35
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 945 SKTISLRSKQETADVNDVAR 964
+KT SL +K ET ++D+ +
Sbjct: 717 NKTKSLNAKYETLGLDDLQK 736
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 431 (156.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 94/198 (47%), Positives = 127/198 (64%)
Query: 7 NLGSIGNSKGRSVHNSVMELRNICNHPYL--SQLHAEEVDTLIPKHYLPPIVRLCGKLEM 64
N G GN S+ N V+EL+ CNHP+L S H D + L I+ GKL +
Sbjct: 887 NKGVRGNQV--SLLNIVVELKKCCNHPFLFESADHGYGGD-INDNSKLDKIILSSGKLVI 943
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
LD+LL +L+ T HRVL FS M R+LD++ +YL+ + +++ RLDG T R +D FN
Sbjct: 944 LDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNA 1003
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
S F FLLS RAGG+G+NL ADTV+IFD+DWNPQ DLQA +RAHRIGQ+ V + RF
Sbjct: 1004 PASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRF 1063
Query: 185 ETVQTVEEQVRASAEHKL 202
T ++VEE++ A+ K+
Sbjct: 1064 VTSKSVEEEILERAKRKM 1081
Score = 67 (28.6 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 1585 SSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDISSEHAFGSS 1644
S ++ I E AK +VLD H +Q L N EG + E K + +K+++S+ FG+
Sbjct: 1068 SVEEEILERAKRKMVLD-HLVIQKL----NAEGRLEKRETKKGSNFDKNELSAILRFGAE 1122
Query: 1645 LVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDH 1687
+ ++ ++ E R+ +D R+ V ++ DE +H
Sbjct: 1123 ELFKEDKNDEESKKRLLSMDIDEILERAEQ-VEEKHTDET-EH 1163
Score = 53 (23.7 bits), Expect = 4.9e-35, Sum P(2) = 4.9e-35
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 1575 EGGPSNALLSSSKDIIAESAKADVVLDEHGKV 1606
+ GP+N L S+KD ++ KA+ ++ E G++
Sbjct: 1491 KSGPANVSLLSTKDGPRKTQKAEPLVKEEGEM 1522
Score = 37 (18.1 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 908 RRRGKKQGSGPSIPDGSAVFDA----KLNQHSQNKSRDSFGSKTISLRS-KQETADVNDV 962
+ + +++G GPS +GS F K +SQ + G T + K+ NDV
Sbjct: 1630 QEKEEEEGVGPSHLNGSRNFQRQQKFKTAGNSQGSQQVHKGIDTAKFEAWKRRRRTENDV 1689
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 470 (170.5 bits), Expect = 1.9e-36, Sum P(4) = 1.9e-36
Identities = 107/245 (43%), Positives = 149/245 (60%)
Query: 4 VEENLGSIGNSKGRS----VHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHY 51
+E+N + G++ + N++MELR CNHPYL E++ +T P
Sbjct: 408 LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQ 467
Query: 52 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
L +++ GKL ++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 468 LQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVR 527
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR H
Sbjct: 528 GNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 587
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLE 228
RIGQ + V + R T + E ++ A KLG+ QS++ N + ++ +E
Sbjct: 588 RIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 647
Query: 229 SLLRE 233
LLR+
Sbjct: 648 DLLRK 652
Score = 46 (21.3 bits), Expect = 1.9e-36, Sum P(4) = 1.9e-36
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 1113 EQSRNQNNPEVKGEETPVSSEAPASTEAF 1141
E R +PE K TP E T +F
Sbjct: 1036 EFDREDEDPEYKPTRTPFKDEIDVRTSSF 1064
Score = 41 (19.5 bits), Expect = 1.9e-36, Sum P(4) = 1.9e-36
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQ 368
YG G R ++ S Y+ Q TE++ E +C+
Sbjct: 805 YGWG-RWTDILSHGRYKRQLTEQDVETICR 833
Score = 41 (19.5 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ ++ L GAD+ E V +PE
Sbjct: 938 RQEVIGDQADRI--LEGADSSEVDVWIPE 964
Score = 41 (19.5 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVD 2011
V + D+K AE +L GG E +E+E E + P +D
Sbjct: 1010 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRTPFKDEID 1058
Score = 38 (18.4 bits), Expect = 1.3e-35, Sum P(4) = 1.3e-35
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 1114 QSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
+S ++ P K S+ A +E F EK
Sbjct: 769 ESDSEEKPSTKPRRPQDKSQGYARSECFRVEK 800
Score = 37 (18.1 bits), Expect = 1.9e-36, Sum P(4) = 1.9e-36
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 1763 CQPSSSLAPW-EAKIDGSSEKD 1783
CQPS L W E G +KD
Sbjct: 1269 CQPSLDLPEWWEC---GKHDKD 1287
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 461 (167.3 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 97/228 (42%), Positives = 143/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 969 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLML 1028
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 1029 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1088
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1089 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1148
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1149 VTRASVEERITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1194
Score = 62 (26.9 bits), Expect = 3.9e-36, Sum P(4) = 3.9e-36
Identities = 46/188 (24%), Positives = 76/188 (40%)
Query: 1029 FNSPNENPGELTGTKNDASVRGD-HTPVSG---HTLASKTEALKPENKAQAGRIENIANS 1084
+++P+ P G K+ + D +TPV H L + L + +AQ G ++
Sbjct: 1524 YSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPL-GLPDKMEAQLGYMDE---K 1579
Query: 1085 SPDDKSLPMVP-NLETAPPGFD-IPIE-KHNEQSRNQNNPEVKGEET---PVSSEAPAST 1138
P + P P ++ P D + E KH + + E + EET P S E
Sbjct: 1580 DPGAQK-PRQPLEVQALPAALDRVESEDKHESPASKERAREERPEETEKAPPSPEQLPRE 1638
Query: 1139 EAF-EQEKVTNTS--SFVNL----ADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTE 1191
E E+EK+ + S ++ ++L DD +ET D K + G +
Sbjct: 1639 EVLPEKEKILDKLELSLIHSRGDSSELRPDDTKAEEKEPIETQQNGD----KEEDDEGKK 1694
Query: 1192 IDAKVKWK 1199
D K K+K
Sbjct: 1695 EDKKGKFK 1702
Score = 51 (23.0 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 1782 KDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDI--PASLATPEEKTEGSEKDPD 1839
+ P S + E E +A + E LPE I L+ + + SE PD
Sbjct: 1609 ESPASKERAREERPEETEKAPPSPEQLPREEVLPEKEKILDKLELSLIHSRGDSSELRPD 1668
Query: 1840 SSFAAQEDPKESVVEAGDQ 1858
+ A +++P E+ + GD+
Sbjct: 1669 DTKAEEKEPIETQ-QNGDK 1686
Score = 49 (22.3 bits), Expect = 1.1e-34, Sum P(5) = 1.1e-34
Identities = 32/144 (22%), Positives = 63/144 (43%)
Query: 2120 PVGSEKESIASAVPLDESKGPDAEVSSQTA-IEG--GGVVSIPVPEEADGPASFLAAEEE 2176
P+G + A +DE K P A+ Q ++ + + ++ + PAS A EE
Sbjct: 1562 PLGLPDKMEAQLGYMDE-KDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREE 1620
Query: 2177 KNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKT 2236
+ E ++K P S Q+ +E + + +D ++ ++L ++ P AE+K
Sbjct: 1621 RPEETEKAP--PSPEQLPREEVLPEKEKILDKLE--LSLIHSRGDSSELRPDDTKAEEKE 1676
Query: 2237 ENEIEEDPVVNSVAVEESKGSEAD 2260
E ++ N E+ +G + D
Sbjct: 1677 PIETQQ----NGDKEEDDEGKKED 1696
Score = 47 (21.6 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS 598
N + + L P G E + +SS P PVP S
Sbjct: 1521 NGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPAS 1554
Score = 45 (20.9 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 263 ESVDKQRREEEMATWRKLIRGLGTDGE-PLPPLPSRLVTDDDLKALYEAMK---IYDAPK 318
E D + R E + R+ R L +D + PLPPL +R+ + ++ + + +
Sbjct: 1379 EDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMR 1438
Query: 319 TGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLK 378
G+ P H D RGK +E R+Y + E + + +
Sbjct: 1439 WGMPPQDAFN---SHWLVRDL----RGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVP 1491
Query: 379 EEGLEK 384
EGL +
Sbjct: 1492 REGLSR 1497
Score = 42 (19.8 bits), Expect = 3.9e-36, Sum P(4) = 3.9e-36
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 340 QHYGRGKRAREVRSY------EEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
++ G+GKR R+ +Y +++W +E + Q+E S + ++E E+
Sbjct: 1337 RNLGKGKRIRKQVNYNDASQEDQEWQDELSDN--QSEYSIGSEDEDEDFEE 1385
Score = 38 (18.4 bits), Expect = 9.0e-34, Sum P(5) = 9.0e-34
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESV 1852
+S++ +K+ E + +TP+ EG E S DP V
Sbjct: 1507 MSLVRKKVQEFEHVNGKYSTPDLIPEGPE-GKKSGEVISSDPNTPV 1551
Score = 37 (18.1 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPM 2206
E +D + + E+++E ++ P G S + ++ ++ +P+
Sbjct: 1364 ELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDKPL 1408
Score = 37 (18.1 bits), Expect = 3.9e-36, Sum P(4) = 3.9e-36
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 522 QPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDI 555
+P+G+ R QS Q+ R K + +L +I
Sbjct: 1386 RPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNI 1419
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 439 (159.6 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 101/230 (43%), Positives = 138/230 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE +L ++ G
Sbjct: 391 MKDIDI-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDTHL--VIN-SG 445
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ LD+LLPK++ RVL FS MTR+LD++EDY ++ + Y RLDG+T R ID
Sbjct: 446 KMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAID 505
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
FN +S FIF+LS RAGG+G+NL AD VI++D+DWNPQVDLQA RAHRIGQ++ V
Sbjct: 506 AFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVK 565
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
V R T TVEE++ AE KL + + I G + + + E L+ +
Sbjct: 566 VFRLITDNTVEERIVERAEMKLRLDSIVIQQGRLIDQQNKLGKDEMLQMI 615
Score = 50 (22.7 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P S +EE+ + + EP+ S + E KE
Sbjct: 781 IGYKVPRSPDIPNSAQVQKEEQRKIDEAEPL--SPEETEEKE 820
Score = 45 (20.9 bits), Expect = 7.3e-36, Sum P(2) = 7.3e-36
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1119 NNPEVKGEETPVSSEA-PASTEAFEQEKVTNTSSFVN 1154
N+ +V+ EE EA P S E E+++ T F N
Sbjct: 793 NSAQVQKEEQRKIDEAEPLSPEETEEKEKLLTQGFTN 829
Score = 37 (18.1 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 355 EEQWTEEEFEKMCQAESSDSPKLKEEG 381
EEQ +E E + E+ + KL +G
Sbjct: 800 EEQRKIDEAEPLSPEETEEKEKLLTQG 826
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 446 (162.1 bits), Expect = 2.4e-36, Sum P(6) = 2.4e-36
Identities = 102/235 (43%), Positives = 143/235 (60%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEV-----DTL---IPKHYLPPIVRLCGKLE 63
G + ++ N++MELR CNHPYL E++ +T P L +++ GKL
Sbjct: 1227 GQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLV 1286
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA HRVL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 1287 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1346
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV--DLQAQARAHRIGQKRDVLV 181
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNP++ QAQAR HRIGQ + V +
Sbjct: 1347 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVKI 1406
Query: 182 LRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREYLESLLRE 233
R T + E ++ A KLG+ QS++ N + ++ +E LLR+
Sbjct: 1407 YRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRK 1461
Score = 63 (27.2 bits), Expect = 2.4e-36, Sum P(6) = 2.4e-36
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 2161 PEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALEN 2217
P++A+G A F EEE E SD E ++ E E E +D +DG +EN
Sbjct: 2933 PDKAEGGA-F--QEEENAEGSDAEESLDKTAESSVLEDEMAQGEELDSLDGGDEIEN 2986
Score = 63 (27.2 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 36/168 (21%), Positives = 63/168 (37%)
Query: 2046 SPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIID----AEGGGNMRQTVPQDLG 2101
+P+ V P E K +AE + D AEG G ++ +D
Sbjct: 2146 NPLAVGFGQTPVATPAAPGQEEKTAAEGKAEEAERPEVKDEEEEAEGSGKDKK---RDRE 2202
Query: 2102 LPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVP 2161
++ E + +E G + S + +E K D + S +++ G VS
Sbjct: 2203 AEAGAARNEPKGVE-VGADTGPKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKN 2261
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVV 2209
+ + AS A +E + E +V+Q+ + A +F P D V
Sbjct: 2262 FDEESNASMSTARDETRDGFYMEDGDPAVAQLLHERTFAFSFWPKDRV 2309
Score = 60 (26.2 bits), Expect = 4.5e-35, Sum P(5) = 4.5e-35
Identities = 29/106 (27%), Positives = 48/106 (45%)
Query: 2156 VSIPV-PEEADGPASFLAAEE-EKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAV 2213
V+ P P + + A+ AEE E+ E D+E + + ++ EA+A GA
Sbjct: 2157 VATPAAPGQEEKTAAEGKAEEAERPEVKDEEEEAEGSGKDKKRDREAEA--------GAA 2208
Query: 2214 ALENTSEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESKGSEA 2259
E +G + P I+E +E + EE+ + + EES EA
Sbjct: 2209 RNEPKGVEVGADTGPKSISEKGSEED-EEEKLEDDDKSEESSQPEA 2253
Score = 59 (25.8 bits), Expect = 2.4e-36, Sum P(6) = 2.4e-36
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 1778 GSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKD 1837
G EK ++ E + V + ++ + S +K + A+ P+ G++
Sbjct: 2164 GQEEKTAAEGKAE-EAERPEVKDEEEEAEGSGKDKKRDREAEAGAARNEPKGVEVGADTG 2222
Query: 1838 PDS-SFAAQEDPKESVVEAGDQMGVSL---GGATVMEKSSEDLATPPLSLANEEEMIEGF 1893
P S S E+ +E +E D+ S GA K+ ++ + +S A +E +GF
Sbjct: 2223 PKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETR-DGF 2281
Query: 1894 ---DNDP 1897
D DP
Sbjct: 2282 YMEDGDP 2288
Score = 59 (25.8 bits), Expect = 2.2e-35, Sum P(5) = 2.2e-35
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 1962 VTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEP 2021
V + D+K AE +L GG E +E+E E + P +D+ + P +
Sbjct: 1823 VGMPDAKAIAAEQRGT-DMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSPPEDK 1881
Query: 2022 CVQMDVRGDG 2031
M++R G
Sbjct: 1882 EEPMEIRAPG 1891
Score = 58 (25.5 bits), Expect = 3.1e-36, Sum P(6) = 3.1e-36
Identities = 22/98 (22%), Positives = 38/98 (38%)
Query: 1778 GSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKD 1837
G+ ++ +V G A + E E + P + EE+ EGS KD
Sbjct: 2138 GAGSTSALNPLAVGFGQTPVATPAAPGQEEKTAAEGKAEEAERP-EVKDEEEEAEGSGKD 2196
Query: 1838 PDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSED 1875
A+ + + G ++G G ++ EK SE+
Sbjct: 2197 KKRDREAEAGAARNEPK-GVEVGADTGPKSISEKGSEE 2233
Score = 58 (25.5 bits), Expect = 5.0e-35, Sum P(6) = 5.0e-35
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 1799 AEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
A AG Q + EK P+ + EE EGS+ + A+ E + G++
Sbjct: 2917 ALAGLQNAVGSGEEKAPDKAE--GGAFQEEENAEGSDAEESLDKTAESSVLEDEMAQGEE 2974
Query: 1859 MGVSLGGATVMEKSSED 1875
+ SL G +E + D
Sbjct: 2975 LD-SLDGGDEIENNEND 2990
Score = 55 (24.4 bits), Expect = 2.4e-36, Sum P(6) = 2.4e-36
Identities = 18/48 (37%), Positives = 20/48 (41%)
Query: 1068 KPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQS 1115
KP I+ ANS P+DK PM E PG KH E S
Sbjct: 1860 KPTRTPFKDEIDEFANSPPEDKEEPM----EIRAPG------KHGESS 1897
Score = 53 (23.7 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 550 AASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPS--AVKGQ 607
AA P+ GP + +++ G E + + AP PDS + S A G
Sbjct: 2818 AAGTSAPAAGPGEADDGTSKADE---KGAEHEDENKDSEKSTDAPAPDSANGSVGAAPGP 2874
Query: 608 SGTIDPSSAVAALNSELNTNLA 629
+G PSS +A N L + +A
Sbjct: 2875 AGL--PSSPLA-FNPFLLSTMA 2893
Score = 52 (23.4 bits), Expect = 1.6e-35, Sum P(6) = 1.6e-35
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 1134 APASTEAFEQEKVTNTSSFVNLADLS-SDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEI 1192
AP + ++ Q++ S V A +S S+D T S + E A +P ++ + EI
Sbjct: 2344 APPTADSPLQKRSLAELSMVGQASISGSEDLTASPQMSKEDALNLSVPRQRRRRRRKIEI 2403
Query: 1193 DAK 1195
+A+
Sbjct: 2404 EAE 2406
Score = 52 (23.4 bits), Expect = 2.0e-34, Sum P(6) = 2.0e-34
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 1716 KEEKIDGS-----LDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSD 1761
+EE +GS LDK +S+ VLED G+++D G + N +D
Sbjct: 2943 EEENAEGSDAEESLDKTAESS--VLEDEMAQ-GEELDSLDGGDEIENNEND 2990
Score = 50 (22.7 bits), Expect = 1.0e-34, Sum P(6) = 1.0e-34
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 518 STPMQPKGRGRRIQ-SGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
S P Q + R R+I+ E+ +RR + +V + S N Q + L+ +
Sbjct: 2389 SVPRQRRRRRRKIEIEAERAAKRRNL-MEMVAQLRESQVVSE------NGQEKVVDLSKA 2441
Query: 577 GGESTATDGNVSSIPTAPVPDSVS 600
E+T++ N SS+ + + +VS
Sbjct: 2442 SREATSSTSNFSSLASKFILPNVS 2465
Score = 50 (22.7 bits), Expect = 3.2e-34, Sum P(6) = 3.2e-34
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 1613 DNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRID 1661
D EGG E +E ++ + S VL+D+ ++ E D +D
Sbjct: 2934 DKAEGGAFQEEENAEGSDAEESLDKT---AESSVLEDEMAQGEELDSLD 2979
Score = 50 (22.7 bits), Expect = 3.2e-34, Sum P(6) = 3.2e-34
Identities = 35/186 (18%), Positives = 65/186 (34%)
Query: 972 ETCSSKAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTC-SVTPTVETPPPGFN 1030
E + A+ + G D + +K DDK+ S P G N
Sbjct: 2202 EAEAGAARNEPKGVEVGADTGPKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKN 2261
Query: 1031 SPNENPGELTGTKN---DASVRGDHTPVSGHTLASKTEALK--PENKAQAGRIENIANSS 1085
E+ ++ ++ D D P L +T A P+++ R++NI +
Sbjct: 2262 FDEESNASMSTARDETRDGFYMEDGDPAVAQLLHERTFAFSFWPKDRVMINRLDNICEAV 2321
Query: 1086 -----PDDKSLP-----MVPNLETAPPGFDIPIEKHNEQSRNQ-NNPEVKGEETPVSSEA 1134
P ++ ++P APP D P++K + + + G E +S
Sbjct: 2322 LKGKWPVNRRQMFDFQGLLPGY--APPTADSPLQKRSLAELSMVGQASISGSEDLTASPQ 2379
Query: 1135 PASTEA 1140
+ +A
Sbjct: 2380 MSKEDA 2385
Score = 49 (22.3 bits), Expect = 2.4e-36, Sum P(6) = 2.4e-36
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 1992 QEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEELGLPSSPM 2048
+ ++ T + EK G+ +DE+K E +G V P GLPSSP+
Sbjct: 2830 EADDGTSKADEK---GAEHEDENKDSEKSTDAPAPDSANGSVG-AAPGPAGLPSSPL 2882
Score = 48 (22.0 bits), Expect = 1.6e-35, Sum P(6) = 1.6e-35
Identities = 24/88 (27%), Positives = 36/88 (40%)
Query: 1200 NTPLPGEAIVAGIEVFKPENKTDGDSV--EKLEDTVDDHS-LVKELIHRSPDHSDMVIGN 1256
NTPL A + P DG S EK + D++ K +PD ++ +G
Sbjct: 2812 NTPLSAAAGTSA-PAAGPGEADDGTSKADEKGAEHEDENKDSEKSTDAPAPDSANGSVGA 2870
Query: 1257 VPGNTSEDSSKMPLETPLIMKSTEGPSV 1284
PG SS + P ++ ST P +
Sbjct: 2871 APGPAGLPSSPLAFN-PFLL-STMAPGL 2896
Score = 48 (22.0 bits), Expect = 7.2e-35, Sum P(7) = 7.2e-35
Identities = 18/71 (25%), Positives = 29/71 (40%)
Query: 1277 KSTEGPSVSMKADDVADH--SRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSAS 1334
+ EG K D A+ +R P G + + T ++S K + + +E S
Sbjct: 2188 EEAEGSGKDKKRDREAEAGAARNEP--KGVEVGADTGPKSISEKGSEEDEEEKLEDDDKS 2245
Query: 1335 PERSGPQNSAV 1345
E S P+ AV
Sbjct: 2246 EESSQPEAGAV 2256
Score = 48 (22.0 bits), Expect = 1.0e-34, Sum P(6) = 1.0e-34
Identities = 26/86 (30%), Positives = 38/86 (44%)
Query: 664 RRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQ 723
RRG+R P S+++ + + + S + L L S+ G Q L N +Q
Sbjct: 2710 RRGRR------PKSEIARAAAAAAAVASTSGINPL-LVNSLFAGMDLTSLQNLQNLQSLQ 2762
Query: 724 -------PCGVATSADVAGPDQK-PA 741
P G+AT+A AG D K PA
Sbjct: 2763 LAGLMGFPPGLATAAAAAGGDTKNPA 2788
Score = 47 (21.6 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 1353 IPSMEAEVAKCPSDAIVNNLLETPLDIKSIGGPIVSMKAADVADADHPLETAVELGS 1409
+P M VA PS + LL TPL + G S AA +AD A E G+
Sbjct: 2791 LPLMLPGVAGLPSVFGLGGLLNTPLS--AAAG--TSAPAAGPGEADDGTSKADEKGA 2843
Score = 46 (21.3 bits), Expect = 2.0e-35, Sum P(6) = 2.0e-35
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1595 KADVVLDEHGKVQLLPGADNPEGGVIVPE 1623
+ +V+ D+ K+ L GAD+ E V +PE
Sbjct: 1751 RQEVIGDQAEKI--LDGADSSEADVWIPE 1777
Score = 44 (20.5 bits), Expect = 8.0e-35, Sum P(6) = 8.0e-35
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 1773 EAKIDGSSEKDPVSSQSVLEGS-----KETVAEAG----DQMDISIMPEKLPEHLDIPAS 1823
E K + + + + EGS ++ AEAG + + + + P+ + S
Sbjct: 2172 EGKAEEAERPEVKDEEEEAEGSGKDKKRDREAEAGAARNEPKGVEVGADTGPKSISEKGS 2231
Query: 1824 LATPEEKTEGSEKDPDSS 1841
EEK E +K +SS
Sbjct: 2232 EEDEEEKLEDDDKSEESS 2249
Score = 43 (20.2 bits), Expect = 2.9e-35, Sum P(7) = 2.9e-35
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 1810 MPEKLPEHLDIP-ASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATV 1868
MP +P++ D+ +S P++K ++P+ +E V + G +GGA
Sbjct: 2599 MPSYVPKNADVLFSSFQKPKQKRHRC-RNPNKLDINTLTGEERVPVVNKRNGKKMGGA-- 2655
Query: 1869 MEKSSEDL 1876
M +DL
Sbjct: 2656 MAPPMKDL 2663
Score = 43 (20.2 bits), Expect = 7.2e-33, Sum P(7) = 7.2e-33
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 673 SPPISDVSAGPESKSNLQSENN---SGGLRLSKSVSMGKQDALS 713
+PP +D S + L SG L+ S M K+DAL+
Sbjct: 2344 APPTADSPLQKRSLAELSMVGQASISGSEDLTASPQMSKEDALN 2387
Score = 42 (19.8 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 534 EQVP---RRRGKKIGLVLPAASDDIP 556
E+VP +R GKK+G + D+P
Sbjct: 2639 ERVPVVNKRNGKKMGGAMAPPMKDLP 2664
Score = 41 (19.5 bits), Expect = 2.4e-36, Sum P(6) = 2.4e-36
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQ 368
YG G R ++ S Y+ Q TE++ E +C+
Sbjct: 1618 YGWG-RWTDILSHGRYKRQLTEQDVETICR 1646
Score = 41 (19.5 bits), Expect = 5.8e-33, Sum P(7) = 5.8e-33
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 572 SLNPSGGEST-ATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNL 628
+L+ E T A + ++ + PT +P SP G +DP + + +N E T L
Sbjct: 2527 ALSAEDAEVTKAFEEDIETPPTRNIP---SP-------GQLDPDTRIPVINLEDGTRL 2574
Score = 40 (19.1 bits), Expect = 1.4e-33, Sum P(7) = 1.4e-33
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 977 KAKTGDSSLNEGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPTVETPPPGFNSPN 1033
K + G EG D E A+ + ++ PT P PG P+
Sbjct: 2504 KRRRGRRKNVEGLDLLFMSHRRTALSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPD 2560
Score = 39 (18.8 bits), Expect = 1.0e-33, Sum P(6) = 1.0e-33
Identities = 21/86 (24%), Positives = 31/86 (36%)
Query: 1028 GFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPD 1087
G ++P PGE + A +G T+A P++ G + ++P
Sbjct: 2820 GTSAPAAGPGEADDGTSKADEKGAEHEDENKDSEKSTDAPAPDSAN--GSV----GAAPG 2873
Query: 1088 DKSLPMVP---N---LETAPPGFDIP 1107
LP P N L T PG P
Sbjct: 2874 PAGLPSSPLAFNPFLLSTMAPGLFYP 2899
Score = 38 (18.4 bits), Expect = 5.8e-33, Sum P(7) = 5.8e-33
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 519 TPMQPKGRGRRIQSGEQVPRRRGKK 543
TP + G + S V RRRG++
Sbjct: 2486 TPSRHLLNGSLVDSEPPVKRRRGRR 2510
Score = 37 (18.1 bits), Expect = 2.0e-34, Sum P(6) = 2.0e-34
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 1822 ASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPL 1881
A A P E +G+ K + +++ K+S S G+ L + PL
Sbjct: 2823 APAAGPGEADDGTSKADEKGAEHEDENKDSEKSTDAPAPDSANGSVGAAPGPAGLPSSPL 2882
Query: 1882 S 1882
+
Sbjct: 2883 A 2883
Score = 37 (18.1 bits), Expect = 1.8e-33, Sum P(7) = 1.8e-33
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 1113 EQSRNQNNPEVKGEETPVSSE 1133
E R +PE K TP E
Sbjct: 1849 EFDREDEDPEYKPTRTPFKDE 1869
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 451 (163.8 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 109/247 (44%), Positives = 144/247 (58%)
Query: 4 VEENLGSIGNSKGRSVHN------SVMELRNICNHPYLSQLHAEEV--DTL------IPK 49
+E+N + +KG + HN ++MELR CNHPYL E++ D P
Sbjct: 715 LEKNFSFL--TKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD 772
Query: 50 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 109
L +++ GKL ++D+LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 773 FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGR 832
Query: 110 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 169
G R A ID+F + DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR
Sbjct: 833 VRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQAR 892
Query: 170 AHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREY 226
HRIGQ + V V R T + E ++ A KLG+ Q I N + E
Sbjct: 893 CHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKME- 951
Query: 227 LESLLRE 233
+E LLR+
Sbjct: 952 VEDLLRK 958
Score = 54 (24.1 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 25/88 (28%), Positives = 38/88 (43%)
Query: 496 SSQPTTAFVP-VAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLP----- 549
+S P AF P + PG PS + P G G + + +Q R + IGL
Sbjct: 2603 TSSPV-AFNPFLIPGVSPGLIYPSMFLSP-GMGMALPAMQQA--RHSEVIGLESQKRKKK 2658
Query: 550 -AASDDI-PSPGPDPKTNEQPQSESLNP 575
D + P+P P P + ++P S+ P
Sbjct: 2659 KTKGDSLNPNPEPAPGSEKEPGSDQNCP 2686
Score = 53 (23.7 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 336 ALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAES-SDSPKLKEEGLEKSLPT 388
+L++ YG+ ++E S++E + E K A S S+ K + G E +PT
Sbjct: 1707 SLESMMYGKKALSQEPGSFQESPSTIEPRKDALASSASEEGKCQPGGHEAEIPT 1760
Score = 49 (22.3 bits), Expect = 6.1e-35, Sum P(4) = 6.1e-35
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 1527 LCGGTGDKKADC-KMEPDCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALLSS 1585
LC TG + ++E CL AS S++ G G ++++N+ S LSS
Sbjct: 1793 LCSETGQRPESIGQLEAKCL-ASPSLDQ---------GNESGFVDMYNLSVCDSRRSLSS 1842
Query: 1586 SKDII 1590
+ +I
Sbjct: 1843 DQQLI 1847
Score = 49 (22.3 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1382 IGGPI-VSMKAADVADADHPLETAVELGSPVNSCTVE 1417
+GG + M AA + A PL + + G+P TVE
Sbjct: 2534 VGGLLNAPMAAACTSTAPAPLPSTTKSGTPATEKTVE 2570
Score = 45 (20.9 bits), Expect = 6.1e-35, Sum P(4) = 6.1e-35
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 2169 SFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFE-----PMDVVDG-----AVALENT 2218
SFLA K+E + P V + ++K + F P V++G A+ L T
Sbjct: 2164 SFLAPVFTKDEQKHRRPYEFEVER-DAKARSLEQFSATHGHPPIVLNGWHGESAIDLSCT 2222
Query: 2219 SEGMGGPSPPLVIA 2232
SEG G + P ++
Sbjct: 2223 SEGSPGATSPFPVS 2236
Score = 44 (20.5 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 1704 EELGLPSLSSATKEEKI-DGSLDKDPDSNLVVLEDSKGSIGDQMDCCQ 1750
E++G+P S + E+ + DG+ D N+ D + + D++D Q
Sbjct: 1310 EKVGMPDEKSLSAEQGVTDGTSDIPERGNM----DKEDNTEDKLDGLQ 1353
Score = 44 (20.5 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 2125 KESIASAVPLDESK----GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNEC 2180
K+++AS+ +E K G +AE+ + + + +G L+ E C
Sbjct: 1736 KDALASSAS-EEGKCQPGGHEAEIPTGPSFMDSLEAGVAQMNIKNGKHLLLSLSREGELC 1794
Query: 2181 SDKEPVGSSVSQIESK 2196
S+ S+ Q+E+K
Sbjct: 1795 SETGQRPESIGQLEAK 1810
Score = 44 (20.5 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVI 801
+PSG+ P V + G+ +S ++ SE+S S +
Sbjct: 2120 EPSGTLPTPVLTGSAGSRSSLSEPEASEHSFSSSAAL 2156
Score = 41 (19.5 bits), Expect = 7.0e-33, Sum P(4) = 7.0e-33
Identities = 21/103 (20%), Positives = 46/103 (44%)
Query: 696 GGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADV-AGP---DQKPAEQSVRVVQSN 751
G + S S ++DAL+ S + + QP G A++ GP D A + +++
Sbjct: 1723 GSFQESPSTIEPRKDALASSASEEGKCQPGG--HEAEIPTGPSFMDSLEAGVAQMNIKNG 1780
Query: 752 QPINLPATHDSS-SQPSGSTPAQVPSMDLGNVASDTKEVLSEN 793
+ + L + + +G P + ++ +AS + + +E+
Sbjct: 1781 KHLLLSLSREGELCSETGQRPESIGQLEAKCLASPSLDQGNES 1823
Score = 40 (19.1 bits), Expect = 7.6e-35, Sum P(3) = 7.6e-35
Identities = 31/148 (20%), Positives = 54/148 (36%)
Query: 550 AASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVS-SIPTAPVP-DSVSPSAVKGQ 607
AA+ +P P P T ++S P+ E T D S + T + D P Q
Sbjct: 2543 AAACTSTAPAPLPST-----TKSGTPAT-EKTVEDKPSSHDVKTDTLAEDKPGPGPFSDQ 2596
Query: 608 SGTIDPSSAVAALNSELNTNLATAXXXXXXXXX-XXXXXMQTKGQSRKTQSGGVTPRRRG 666
S +S+ A N L ++ + Q+R ++ G+ ++R
Sbjct: 2597 SEPAITTSSPVAFNPFLIPGVSPGLIYPSMFLSPGMGMALPAMQQARHSEVIGLESQKRK 2656
Query: 667 KRQALGSPPISDVSAGPESKSNLQSENN 694
K++ G + P S+ S+ N
Sbjct: 2657 KKKTKGDSLNPNPEPAPGSEKEPGSDQN 2684
Score = 40 (19.1 bits), Expect = 3.2e-32, Sum P(6) = 3.2e-32
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 656 QSGGVTPRRRGKR---QALGSPPI-SDVSAG 682
+ GG PRRRG+R + L +P I +D +G
Sbjct: 2435 RDGG--PRRRGRRPRSELLKAPAIVADSPSG 2463
Score = 40 (19.1 bits), Expect = 2.6e-31, Sum P(6) = 2.6e-31
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 889 VSVPVKRHGRKTPTTGEAPRRRGKKQGSGPSI 920
+++P + R + G ++R KK+ G S+
Sbjct: 2634 MALPAMQQARHSEVIGLESQKRKKKKTKGDSL 2665
Score = 39 (18.8 bits), Expect = 3.2e-32, Sum P(6) = 3.2e-32
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 545 GLVLPAASDD---IPS-PGPDPKTNEQPQSESLNPS 576
G P+AS +P+ P P+P Q+E PS
Sbjct: 2320 GQAPPSASHPEGPVPAAPAPEPTPAASSQAEKAIPS 2355
Score = 37 (18.1 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 1823 SLATPEEKTEGSEKDPDS 1840
SL E GSEK+P S
Sbjct: 2664 SLNPNPEPAPGSEKEPGS 2681
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 451 (163.8 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 109/247 (44%), Positives = 144/247 (58%)
Query: 4 VEENLGSIGNSKGRSVHN------SVMELRNICNHPYLSQLHAEEV--DTL------IPK 49
+E+N + +KG + HN ++MELR CNHPYL E++ D P
Sbjct: 715 LEKNFSFL--TKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD 772
Query: 50 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 109
L +++ GKL ++D+LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 773 FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGR 832
Query: 110 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 169
G R A ID+F + DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR
Sbjct: 833 VRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQAR 892
Query: 170 AHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREY 226
HRIGQ + V V R T + E ++ A KLG+ Q I N + E
Sbjct: 893 CHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKME- 951
Query: 227 LESLLRE 233
+E LLR+
Sbjct: 952 VEDLLRK 958
Score = 54 (24.1 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 25/88 (28%), Positives = 38/88 (43%)
Query: 496 SSQPTTAFVP-VAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLP----- 549
+S P AF P + PG PS + P G G + + +Q R + IGL
Sbjct: 2603 TSSPV-AFNPFLIPGVSPGLIYPSMFLSP-GMGMALPAMQQA--RHSEVIGLESQKRKKK 2658
Query: 550 -AASDDI-PSPGPDPKTNEQPQSESLNP 575
D + P+P P P + ++P S+ P
Sbjct: 2659 KTKGDSLNPNPEPAPGSEKEPGSDQNCP 2686
Score = 53 (23.7 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 336 ALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAES-SDSPKLKEEGLEKSLPT 388
+L++ YG+ ++E S++E + E K A S S+ K + G E +PT
Sbjct: 1707 SLESMMYGKKALSQEPGSFQESPSTIEPRKDALASSASEEGKCQPGGHEAEIPT 1760
Score = 49 (22.3 bits), Expect = 6.1e-35, Sum P(4) = 6.1e-35
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 1527 LCGGTGDKKADC-KMEPDCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALLSS 1585
LC TG + ++E CL AS S++ G G ++++N+ S LSS
Sbjct: 1793 LCSETGQRPESIGQLEAKCL-ASPSLDQ---------GNESGFVDMYNLSVCDSRRSLSS 1842
Query: 1586 SKDII 1590
+ +I
Sbjct: 1843 DQQLI 1847
Score = 49 (22.3 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1382 IGGPI-VSMKAADVADADHPLETAVELGSPVNSCTVE 1417
+GG + M AA + A PL + + G+P TVE
Sbjct: 2534 VGGLLNAPMAAACTSTAPAPLPSTTKSGTPATEKTVE 2570
Score = 45 (20.9 bits), Expect = 6.1e-35, Sum P(4) = 6.1e-35
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 2169 SFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFE-----PMDVVDG-----AVALENT 2218
SFLA K+E + P V + ++K + F P V++G A+ L T
Sbjct: 2164 SFLAPVFTKDEQKHRRPYEFEVER-DAKARSLEQFSATHGHPPIVLNGWHGESAIDLSCT 2222
Query: 2219 SEGMGGPSPPLVIA 2232
SEG G + P ++
Sbjct: 2223 SEGSPGATSPFPVS 2236
Score = 44 (20.5 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 1704 EELGLPSLSSATKEEKI-DGSLDKDPDSNLVVLEDSKGSIGDQMDCCQ 1750
E++G+P S + E+ + DG+ D N+ D + + D++D Q
Sbjct: 1310 EKVGMPDEKSLSAEQGVTDGTSDIPERGNM----DKEDNTEDKLDGLQ 1353
Score = 44 (20.5 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 2125 KESIASAVPLDESK----GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNEC 2180
K+++AS+ +E K G +AE+ + + + +G L+ E C
Sbjct: 1736 KDALASSAS-EEGKCQPGGHEAEIPTGPSFMDSLEAGVAQMNIKNGKHLLLSLSREGELC 1794
Query: 2181 SDKEPVGSSVSQIESK 2196
S+ S+ Q+E+K
Sbjct: 1795 SETGQRPESIGQLEAK 1810
Score = 44 (20.5 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVI 801
+PSG+ P V + G+ +S ++ SE+S S +
Sbjct: 2120 EPSGTLPTPVLTGSAGSRSSLSEPEASEHSFSSSAAL 2156
Score = 41 (19.5 bits), Expect = 7.0e-33, Sum P(4) = 7.0e-33
Identities = 21/103 (20%), Positives = 46/103 (44%)
Query: 696 GGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADV-AGP---DQKPAEQSVRVVQSN 751
G + S S ++DAL+ S + + QP G A++ GP D A + +++
Sbjct: 1723 GSFQESPSTIEPRKDALASSASEEGKCQPGG--HEAEIPTGPSFMDSLEAGVAQMNIKNG 1780
Query: 752 QPINLPATHDSS-SQPSGSTPAQVPSMDLGNVASDTKEVLSEN 793
+ + L + + +G P + ++ +AS + + +E+
Sbjct: 1781 KHLLLSLSREGELCSETGQRPESIGQLEAKCLASPSLDQGNES 1823
Score = 40 (19.1 bits), Expect = 7.6e-35, Sum P(3) = 7.6e-35
Identities = 31/148 (20%), Positives = 54/148 (36%)
Query: 550 AASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVS-SIPTAPVP-DSVSPSAVKGQ 607
AA+ +P P P T ++S P+ E T D S + T + D P Q
Sbjct: 2543 AAACTSTAPAPLPST-----TKSGTPAT-EKTVEDKPSSHDVKTDTLAEDKPGPGPFSDQ 2596
Query: 608 SGTIDPSSAVAALNSELNTNLATAXXXXXXXXX-XXXXXMQTKGQSRKTQSGGVTPRRRG 666
S +S+ A N L ++ + Q+R ++ G+ ++R
Sbjct: 2597 SEPAITTSSPVAFNPFLIPGVSPGLIYPSMFLSPGMGMALPAMQQARHSEVIGLESQKRK 2656
Query: 667 KRQALGSPPISDVSAGPESKSNLQSENN 694
K++ G + P S+ S+ N
Sbjct: 2657 KKKTKGDSLNPNPEPAPGSEKEPGSDQN 2684
Score = 40 (19.1 bits), Expect = 3.2e-32, Sum P(6) = 3.2e-32
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 656 QSGGVTPRRRGKR---QALGSPPI-SDVSAG 682
+ GG PRRRG+R + L +P I +D +G
Sbjct: 2435 RDGG--PRRRGRRPRSELLKAPAIVADSPSG 2463
Score = 40 (19.1 bits), Expect = 2.6e-31, Sum P(6) = 2.6e-31
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 889 VSVPVKRHGRKTPTTGEAPRRRGKKQGSGPSI 920
+++P + R + G ++R KK+ G S+
Sbjct: 2634 MALPAMQQARHSEVIGLESQKRKKKKTKGDSL 2665
Score = 39 (18.8 bits), Expect = 3.2e-32, Sum P(6) = 3.2e-32
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 545 GLVLPAASDD---IPS-PGPDPKTNEQPQSESLNPS 576
G P+AS +P+ P P+P Q+E PS
Sbjct: 2320 GQAPPSASHPEGPVPAAPAPEPTPAASSQAEKAIPS 2355
Score = 37 (18.1 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 1823 SLATPEEKTEGSEKDPDS 1840
SL E GSEK+P S
Sbjct: 2664 SLNPNPEPAPGSEKEPGS 2681
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 467 (169.5 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 98/194 (50%), Positives = 131/194 (67%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G+S G N VMEL+ CNH +L + E+ + P+ +L +VR GKL +LD+L
Sbjct: 748 GTRGSSSG--FLNIVMELKKCCNHAFLIK-QPEDGENDAPQEHLQSLVRGGGKLVLLDKL 804
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +LK +RVL FS M R+LD++ DYL+ K+Y++ RLDG G R +D FN + S
Sbjct: 805 LTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSE 864
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 865 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 924
Query: 189 TVEEQVRASAEHKL 202
TVEE + A+ K+
Sbjct: 925 TVEEDIIERAKKKM 938
Score = 43 (20.2 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 338 DTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEG--LEKSLPT 388
D + +GK+ + Y + +++ E ++ D PK+K+ ++K P+
Sbjct: 1303 DPEKKPQGKQLQMRTDYLLKMLKKDLESQDAIKAGDEPKIKKRKPRMKKKAPS 1355
Score = 42 (19.8 bits), Expect = 2.0e-35, Sum P(4) = 2.0e-35
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 1007 KKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEA 1066
+K+ DK S + P G + P +T + + + T + E
Sbjct: 1408 EKEGDKDKKRSKPKKEKAKPAGKGKKAQGPVHITQGSEPIPIGEEDDELDQETFSICKER 1467
Query: 1067 LKPENKA 1073
++P KA
Sbjct: 1468 MRPVKKA 1474
Score = 42 (19.8 bits), Expect = 2.5e-35, Sum P(4) = 2.5e-35
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 300 TDDDLKALYEAMKIYDAPKTGVSPNVGVKRK 330
TD LK L + ++ DA K G P + KRK
Sbjct: 1317 TDYLLKMLKKDLESQDAIKAGDEPKIK-KRK 1346
Score = 41 (19.5 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1328 VEPTSASPERSGPQNSAVGF 1347
+EP S +RS Q SA F
Sbjct: 1787 LEPISPGMDRSAEQKSATDF 1806
Score = 40 (19.1 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 554 DIPSPGPDPKTNEQPQS--ESLNP----SGGESTATDGN 586
D P P DP++ + +S E ++P S + +ATD N
Sbjct: 1769 DKPPPLIDPRSPQSQKSPLEPISPGMDRSAEQKSATDFN 1807
Score = 40 (19.1 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 731 ADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGS 769
A AG +K A+ V + Q ++PI + D Q + S
Sbjct: 1425 AKPAGKGKK-AQGPVHITQGSEPIPIGEEDDELDQETFS 1462
Score = 39 (18.8 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 1085 SPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNN 1120
SP + P LE PG D E+ + N NN
Sbjct: 1779 SPQSQKSP----LEPISPGMDRSAEQKSATDFNWNN 1810
Score = 39 (18.8 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 1785 VSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDI 1820
+S Q L+ ++ + + GD++ + PEH+ I
Sbjct: 1485 LSVQDQLQHTRTCLLKIGDRITECLKSYSDPEHIKI 1520
Score = 37 (18.1 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 1186 EQSGTEIDAKVKWKNTPLPGEAIVAGI---EV--FKPENKTDGDSVEKLEDTVDDHSLVK 1240
E +E D + K + P + V G E+ F K G +E+LE D LV+
Sbjct: 1108 ETDDSEDDKRPKRRGRPRARKNNVEGFTDAEIRRFIKAYKKFGAPLERLEAIARDSELVE 1167
Query: 1241 ELI 1243
+ I
Sbjct: 1168 KSI 1170
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 450 (163.5 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 109/247 (44%), Positives = 144/247 (58%)
Query: 4 VEENLGSIGNSKGRSVHN------SVMELRNICNHPYLSQLHAEEV--DTL------IPK 49
+E+N + +KG + HN ++MELR CNHPYL E++ D P
Sbjct: 715 LEKNFSFL--TKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD 772
Query: 50 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 109
L +++ GKL ++D+LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 773 FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGR 832
Query: 110 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 169
G R A ID+F + DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR
Sbjct: 833 VRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQAR 892
Query: 170 AHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAEDRREY 226
HRIGQ + V V R T + E ++ A KLG+ Q I N + E
Sbjct: 893 CHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKME- 951
Query: 227 LESLLRE 233
+E LLR+
Sbjct: 952 VEDLLRK 958
Score = 59 (25.8 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 31/137 (22%), Positives = 57/137 (41%)
Query: 2076 PDAEANNII----DAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSK-P---VGSEKES 2127
PD N I D + +P+ L + V ++ F + P S K+
Sbjct: 1675 PDVTCENFISKVQDVISINHDESLLPESLESMMYGKKVLSQEPSSFQESPSTNTESRKDV 1734
Query: 2128 IASAVPLD---ESKGPDAEVSS----QTAIEGGGVVSIPVPEEADGPASFLAAEEEKNEC 2180
I ++ D +S GP+AE++S ++E GGV + +G ++ +E C
Sbjct: 1735 ITISISKDGNCQSGGPEAEIASGPTFMGSLEAGGVAQANIK---NGKHLLMSISKEGELC 1791
Query: 2181 -SDKEPVGSSVSQIESK 2196
S+ ++ Q+E+K
Sbjct: 1792 CSEAGQRPENIGQLEAK 1808
Score = 50 (22.7 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 29/160 (18%), Positives = 54/160 (33%)
Query: 536 VPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPV 595
VP+ G GL+ P + S P ++ ++ E + +V + A
Sbjct: 2528 VPQMFGVG-GLLSPPMATTCTSTAPASLSSTTKSGTAVTEKTAEDKPSSHDVKTDTLAE- 2585
Query: 596 PDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXXXXX-XXXXXMQTKGQSRK 654
D P QS +S+ A N L ++ + Q+R
Sbjct: 2586 -DKPGPGPFSDQSEPAITTSSPVAFNPFLIPGVSPGLIYPSMFLSPGMGMALPAMQQARH 2644
Query: 655 TQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENN 694
++ G+ ++R K++ G P S P + + N
Sbjct: 2645 SEIVGLESQKRKKKKTKGDNPNSHPEPAPSCEREPSGDEN 2684
Score = 49 (22.3 bits), Expect = 2.7e-33, Sum P(4) = 2.7e-33
Identities = 27/107 (25%), Positives = 45/107 (42%)
Query: 1242 LIHRSPDHSDMVI-GNVPGNTS-EDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETP 1299
+I+R + +V+ G P + E S +P TP ++ S+ G S+ + A+HS
Sbjct: 2097 IINRLDNICHVVLKGKWPSSQQYEPSGTLP--TP-VLTSSAGSRTSLSEPEAAEHSFSNG 2153
Query: 1300 ILSGSPINSGTECSTVSVKTDVGNH--PQNVEPTSASPERSGPQNSA 1344
+ I+ + + V K D H P E + R Q SA
Sbjct: 2154 AALAAQIHKESFLAPVFTK-DEQKHRRPYEFEVERDAKARGLEQFSA 2199
Score = 48 (22.0 bits), Expect = 5.2e-34, Sum P(3) = 5.2e-34
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVI 801
+PSG+ P V + G+ S ++ +E+S S G +
Sbjct: 2120 EPSGTLPTPVLTSSAGSRTSLSEPEAAEHSFSNGAAL 2156
Score = 46 (21.3 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 681 AGPESKSNLQS--ENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSAD-VAGPD 737
+G ++ NL + NS +L +S++ + S+ L N+ + V + D ++ PD
Sbjct: 1621 SGTQAPGNLCCLYQTNS---KLYESLTYSQMSRTSESLENEPE-NLVRVESRDDHLSLPD 1676
Query: 738 QKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSK 797
E + VQ IN HD S P L S +E S N+ S+
Sbjct: 1677 VT-CENFISKVQDVISIN----HDESLLPESLESMMYGKKVLSQEPSSFQESPSTNTESR 1731
Query: 798 GGVIPI 803
VI I
Sbjct: 1732 KDVITI 1737
Score = 45 (20.9 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 2072 ESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASA 2131
E + + E N+ A G G P+ L L ++++ EK +GF +A+
Sbjct: 1867 EEEEEENEEENLAMAVGMGER----PEVLHLTEPTTNISREKNQGFQDETKKGSLEVANQ 1922
Query: 2132 VP 2133
P
Sbjct: 1923 TP 1924
Score = 45 (20.9 bits), Expect = 4.4e-33, Sum P(4) = 4.4e-33
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 1324 HPQNVEPTSASPERSGPQNSAVGFCDKSEIPS 1355
HP+ P +++PE P +A +KS IPS
Sbjct: 2328 HPEGPGPATSAPE---PATAASSQAEKS-IPS 2355
Score = 43 (20.2 bits), Expect = 5.5e-33, Sum P(4) = 5.5e-33
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 774 VPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQ---SFEEKACTNASK 830
+P + N S ++V+S N ++P +L +M ++V Q SF+E TN
Sbjct: 1674 LPDVTCENFISKVQDVISINHDES--LLPE-SLESMMYGKKVLSQEPSSFQESPSTNTES 1730
Query: 831 SK 832
K
Sbjct: 1731 RK 1732
Score = 42 (19.8 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 1823 SLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSL--GGATVMEKSSED 1875
SL+ + T+G+ P+ +ED E V+ + S GG V + +D
Sbjct: 1319 SLSAEQGVTDGTSDIPERGNTDKEDNAEDKVDGLQKQTESSSDGGDGVFSEKKDD 1373
Score = 40 (19.1 bits), Expect = 8.4e-34, Sum P(4) = 8.4e-34
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 1704 EELGLPSLSSATKEEKI-DGSLDKDPDSNLVVLEDSKGSIGDQMDCCQ 1750
E++G+P S + E+ + DG+ D N D + + D++D Q
Sbjct: 1310 EKVGMPDEKSLSAEQGVTDGTSDIPERGNT----DKEDNAEDKVDGLQ 1353
Score = 38 (18.4 bits), Expect = 5.2e-34, Sum P(3) = 5.2e-34
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 889 VSVPVKRHGRKTPTTG-EAPRRRGKK-QGSGPS 919
+++P + R + G E+ +R+ KK +G P+
Sbjct: 2634 MALPAMQQARHSEIVGLESQKRKKKKTKGDNPN 2666
Score = 38 (18.4 bits), Expect = 8.4e-34, Sum P(4) = 8.4e-34
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKESVVEAGD 1857
+++TE S D F+ ++D + + D
Sbjct: 1353 QKQTESSSDGGDGVFSEKKDDSRAAQDGSD 1382
Score = 38 (18.4 bits), Expect = 7.1e-33, Sum P(3) = 7.1e-33
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 662 PRRRGKR---QALGSPPI-SDVSAG 682
PRRRG+R + L +P I +D +G
Sbjct: 2439 PRRRGRRPRSELLKAPSIVADSPSG 2463
Score = 37 (18.1 bits), Expect = 2.7e-33, Sum P(4) = 2.7e-33
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 1451 KTDDVADHPVEPPGCDK 1467
K D+ HP P C++
Sbjct: 2661 KGDNPNSHPEPAPSCER 2677
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 431 (156.8 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 91/194 (46%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 740 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 796
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 797 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 856
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 857 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 916
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 917 SVEEDILERAKKKM 930
Score = 64 (27.6 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 66/303 (21%), Positives = 120/303 (39%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHS----PVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH P+H
Sbjct: 1175 GCIKALKDSSSGTERTGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELIPLH 1225
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQS 1751
EE ++ TK D K+ DSNL++ E GS I D +
Sbjct: 1226 KSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLT 1285
Query: 1752 GVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEG---SKETVAEAGDQMDIS 1808
++P++ D + L + +D ++ + L G SK A A + + +
Sbjct: 1286 HKILPDD-PDKKPQAKQLQTRADYLIKLLSRD-LAKKEALSGAGSSKRRKARA--KKNKA 1341
Query: 1809 IMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATV 1868
+ K+ E + +S E+ E +K +S +E K+S V + G
Sbjct: 1342 MKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSDGRERSKKSSVSDAPVHITASGEPVP 1401
Query: 1869 MEKSSEDLATPPLSLANE-----EEMIEGFDNDPTGISMA--VMDSKECAAEAADQM--C 1919
+ + SE+L S+ E + ++ D G+S + +++C + D + C
Sbjct: 1402 ISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITEC 1461
Query: 1920 VSE 1922
+ E
Sbjct: 1462 LKE 1464
Score = 45 (20.9 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 24/94 (25%), Positives = 45/94 (47%)
Query: 653 RKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSN---LQSE-NNSGGLRLSKSVSMGK 708
++ SG + +RR K +A + + + E KS+ L SE ++ +LS+S S G+
Sbjct: 1320 KEALSGAGSSKRR-KARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSDGR 1378
Query: 709 QDALSQELSNK-IQVQPCG--VATSADVAGPDQK 739
+ + +S+ + + G V S + DQK
Sbjct: 1379 ERSKKSSVSDAPVHITASGEPVPISEESEELDQK 1412
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 438 (159.2 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 104/234 (44%), Positives = 136/234 (58%)
Query: 7 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV-DTL-IP--KHYLPPIVRLCGKL 62
N G+ G+ S+ N + EL+ NHPYL ++V D P ++ L IV GK+
Sbjct: 619 NAGNRGSQI--SLLNIMSELKKASNHPYLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKM 676
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
+L++LL +L+ HRVL FS M R+LD++ DY+ K Y++ RLDG R ID F
Sbjct: 677 VLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHF 736
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
N S F FLLS RAGG+G+NL ADTVIIFD+DWNPQ DLQA ARAHRIGQK V V
Sbjct: 737 NAPGSKDFAFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVY 796
Query: 183 RFETVQTVEEQVRASAEHKLGVANQSITAGFFD----NNTSAEDRREYLESLLR 232
RF + TVEEQ+ A K+ + I+ G D N + E L +L+
Sbjct: 797 RFVSKDTVEEQILERARKKMVLEYAIISLGITDPSAKNGSKTEPSTNELSQILK 850
Score = 54 (24.1 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 24/108 (22%), Positives = 47/108 (43%)
Query: 2108 DVEEEKIEGFSKPVGSEKESIASAVPLDESKGP-DAEVSSQTAIEGGGVVSI------PV 2160
D E + G S PVGS ++ I + P+ + G + ++ + GG + PV
Sbjct: 1216 DEESDSSVGGSTPVGSVRKRIRKSTPVPHNSGSSNGSHNTLSGNSNGGTANNTGKHRKPV 1275
Query: 2161 P-EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMD 2207
E ++ A ++++ S +G + + E ++ E +E MD
Sbjct: 1276 KLESSEKLAKQKRMNQQRSSASASPALGHAKFKEEKRDLE---YESMD 1320
Score = 51 (23.0 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 658 GGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGG-----------LRLSKSVSM 706
GG TP +++ S P+ S N S N++GG ++L S +
Sbjct: 1224 GGSTPVGSVRKRIRKSTPVPHNSGSSNGSHNTLSGNSNGGTANNTGKHRKPVKLESSEKL 1283
Query: 707 GKQDALSQELSN 718
KQ ++Q+ S+
Sbjct: 1284 AKQKRMNQQRSS 1295
Score = 41 (19.5 bits), Expect = 3.9e-33, Sum P(3) = 3.9e-33
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 1313 STVSVKTDVGNHPQNVEPTSASPERSGPQNSA 1344
S+V T VG+ + + ++ P SG N +
Sbjct: 1221 SSVGGSTPVGSVRKRIRKSTPVPHNSGSSNGS 1252
Score = 38 (18.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 2159 PVPEEADGPASFLAAEEEK 2177
PVP E + A ++A ++EK
Sbjct: 1064 PVPGEPNQTALWIAKKKEK 1082
Score = 38 (18.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 2157 SIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEP 2198
S+ + D + L EE + PVGS +I P
Sbjct: 1200 SVHLGRRVDYLFTLLRDEESDSSVGGSTPVGSVRKRIRKSTP 1241
Score = 37 (18.1 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
Identities = 19/91 (20%), Positives = 37/91 (40%)
Query: 1568 DIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSE 1627
D+E +M+ G +++ + + K LD+H ++L G I E +
Sbjct: 1313 DLEYESMDEGSCKSIMQPVTSSLHKLHKGSKGLDKHEWAKILKSELLNIGDFI--ESEVS 1370
Query: 1628 NMGEKDDISSEHAFG-SSLVLQDKASEAEIG 1657
+ KD + +H + + L K +IG
Sbjct: 1371 KVQNKDKLR-KHLWSFTGLYWPSKVPSNKIG 1400
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 428 (155.7 bits), Expect = 3.8e-36, P = 3.8e-36
Identities = 92/202 (45%), Positives = 129/202 (63%)
Query: 4 VEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKL 62
VE N+ + + + N +M LR CNHPYL + +D + + + +V GK
Sbjct: 546 VETNI-PVESEVNLKLQNIMMLLRKCCNHPYLIEY---PIDPVTQEFKIDEELVTNSGKF 601
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
+LDR+LP+LK H+VL FS MTR+LD++ DY F+ + + RLDG S +R + F
Sbjct: 602 LILDRMLPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSF 661
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
N D FIFL+S RAGG+G+NL AADTVII+D+DWNPQ DLQAQ R HRIGQ + V+V
Sbjct: 662 NT-DPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 720
Query: 183 RFETVQTVEEQV--RASAEHKL 202
R T T+++++ RA+A+ KL
Sbjct: 721 RLVTANTIDQKIVERAAAKRKL 742
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 480 (174.0 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 110/234 (47%), Positives = 149/234 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT-------LIPKHY-LPPIVRLCGKLE 63
G++ ++ N++MELR CNHPYL E++ T +IP + L +VR GKL
Sbjct: 694 GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLV 753
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
++D+LLPKLKA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F+
Sbjct: 754 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 813
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V R
Sbjct: 814 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 873
Query: 184 FETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 233
T + E ++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 874 LITRNSYEREMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 926
Score = 56 (24.8 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 25/125 (20%), Positives = 56/125 (44%)
Query: 1063 KTEALKPENKAQAGRIEN--IANS--SPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQ 1118
+T A P ++ ++E+ +A S +P D + + P+ T ++P K ++ +
Sbjct: 1628 ETAAQVPSLESLTLKLEHEVVARSRPTPQDYEMRVAPSDTTPLVSRNVPPVKLEDEDDSD 1687
Query: 1119 NNPEVK-----GEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMET 1173
+ ++ + SS + +ST+ E EK S+ + + L ++ S+T + +
Sbjct: 1688 SELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKLYDEESLLSLTMSQDG 1747
Query: 1174 APGFD 1178
P D
Sbjct: 1748 FPNED 1752
Score = 53 (23.7 bits), Expect = 1.8e-35, Sum P(6) = 1.8e-35
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 1234 DDHSLVKELIHRSPDH-SDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVA 1292
DD ++ E HR D+ SD+V G ED PL+ P + EG + M ++++
Sbjct: 1281 DDKAIAAE--HRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEIS 1338
Score = 50 (22.7 bits), Expect = 9.8e-36, Sum P(5) = 9.8e-36
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSEN 793
P +KP E++ V S + + L H+ ++ S TP ++ SDT ++S N
Sbjct: 1621 PVEKPPEETAAQVPSLESLTLKLEHEVVAR-SRPTPQDY---EMRVAPSDTTPLVSRN 1674
Score = 43 (20.2 bits), Expect = 1.8e-35, Sum P(6) = 1.8e-35
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 1808 SIMPEKLPEHLDIPASL----ATPEEKTEGSEKDPDSSFAAQEDPKESVVEA 1855
++ P KL + D + L +P + S SS ED KE + A
Sbjct: 1674 NVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSA 1725
Score = 42 (19.8 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R R++ S ++ + TE + E +C+A
Sbjct: 1073 YGWG-RWRDILSHGRFKRRMTERDVETICRA 1102
Score = 40 (19.1 bits), Expect = 9.8e-36, Sum P(5) = 9.8e-36
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 1036 PGEL---TGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQ---AG--RIENIANSSPD 1087
PG + +G K +R D + + T +L N Q +G + ++ +SS
Sbjct: 2025 PGPIATDSGKKRARRMRPDLSKMMALMQGGGTGSLSLHNTFQHSSSGLQSVSSLGHSSAT 2084
Query: 1088 DKSLPMVP 1095
SLP VP
Sbjct: 2085 SASLPFVP 2092
Score = 40 (19.1 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 550 AASDDIPSPG---PDPKTNEQPQSES------LNPSGGESTATDGNVSSIPTAPVPDSVS 600
A SD P P K ++ S+S L+PS S+++ + SS +
Sbjct: 1663 APSDTTPLVSRNVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEK 1722
Query: 601 PSAVKGQSGTIDPSSAVAALNSE 623
SA + +S D S ++ S+
Sbjct: 1723 LSADRSRSKLYDEESLLSLTMSQ 1745
Score = 38 (18.4 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEE 2175
GP + ++ G PVP A+ +A EE
Sbjct: 1810 GPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEE 1846
Score = 38 (18.4 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 1532 GDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALL 1583
G++K ++E C+ + ++++L R + + DG + + E P A L
Sbjct: 1906 GNRKKLVELEVQCMEEPNHLDVDLETRIPVINKVDGTLLVG--EDAPRRAEL 1955
Score = 38 (18.4 bits), Expect = 2.1e-35, Sum P(4) = 2.1e-35
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 464 GQSTSASASLPXXXXXXXXXXXAQHV 489
G S++ SASLP + HV
Sbjct: 2079 GHSSATSASLPFVPFVMGGAASSPHV 2104
Score = 37 (18.1 bits), Expect = 3.8e-36, Sum P(5) = 3.8e-36
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEED 2243
T+ G PPL ED+ + + ++D
Sbjct: 2141 TTSGTALRLPPLQPEEDEDDEDEDDD 2166
Score = 37 (18.1 bits), Expect = 7.3e-35, Sum P(6) = 7.3e-35
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 1879 PPLSLANEEEMIEGFDNDPTGISMAVMDSKECAAEAADQMCVSEGCVVVTEKLSED 1934
PP+ L +E++ D S + S ++ + D+ SE EKLS D
Sbjct: 1676 PPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDE---SED--EKEEKLSAD 1726
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 443 (161.0 bits), Expect = 4.8e-36, Sum P(2) = 4.8e-36
Identities = 95/194 (48%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
G+ G++ G N VMEL+ CNH +L + EE + + L ++R GKL +LD+L
Sbjct: 725 GTRGSTSG--FLNIVMELKKCCNHCHLIK-PPEENERENGQEVLLSLIRSSGKLILLDKL 781
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YLT K Y + RLDG G R +D FN S
Sbjct: 782 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 841
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 842 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 901
Query: 189 TVEEQVRASAEHKL 202
TVEE++ A+ K+
Sbjct: 902 TVEEEIIERAKKKM 915
Score = 54 (24.1 bits), Expect = 5.8e-36, Sum P(3) = 5.8e-36
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 2111 EEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASF 2170
+EK K +KE S ++ KG DA+ SS++ G V I E P
Sbjct: 1383 KEKQMSSRKDKEGDKERKRSKDKKEKPKGGDAKSSSKSK-RSQGPVHITAGSE---PVPI 1438
Query: 2171 LAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE 2220
E+E+++ D+E S+ + E P KA + +D D ++++ E
Sbjct: 1439 --GEDEEDDL-DQETF--SICK-ERMRPVKKALKQLDKPDKGLSVQEQLE 1482
Score = 51 (23.0 bits), Expect = 4.8e-36, Sum P(2) = 4.8e-36
Identities = 33/148 (22%), Positives = 52/148 (35%)
Query: 1029 FNSP--NENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSP 1086
F+SP ++NP E K+D + +P +K + K ENK + +
Sbjct: 1345 FSSPRHSDNPSEEGEVKDDGL---EKSP-------TKKKQKKKENKENKEKQMSSRKDKE 1394
Query: 1087 DDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSS--EAPASTEAFEQE 1144
DK + + P G D +++S+ + E P+ E E F
Sbjct: 1395 GDKERKRSKDKKEKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDEEDDLDQETFSIC 1454
Query: 1145 KVTNTSSFVNLADLSSDDKTCSVTPAME 1172
K L L DK SV +E
Sbjct: 1455 KERMRPVKKALKQLDKPDKGLSVQEQLE 1482
Score = 51 (23.0 bits), Expect = 5.8e-36, Sum P(3) = 5.8e-36
Identities = 18/64 (28%), Positives = 25/64 (39%)
Query: 1060 LASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFD-IPIEKHNEQSRNQ 1118
L + +K ENKA I SSP P E G + P +K ++ N+
Sbjct: 1322 LTKRKPRVKKENKAPLKDEHGIEFSSPRHSDNPSEEG-EVKDDGLEKSPTKKKQKKKENK 1380
Query: 1119 NNPE 1122
N E
Sbjct: 1381 ENKE 1384
Score = 51 (23.0 bits), Expect = 9.3e-36, Sum P(4) = 9.3e-36
Identities = 20/87 (22%), Positives = 40/87 (45%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
+++ S + + + + +V F+ +DE + D + V E E+ +EL
Sbjct: 988 ENEVSTSATDELLSQFKVANFATMEDEEELDERPHKDWDEIIPEEQRKKVEEEERQKELE 1047
Query: 1708 ----LPSLSSATKEEKIDGSLDKDPDS 1730
LP + S+TK+ + + S D D +S
Sbjct: 1048 EIYMLPRIRSSTKKAQTNDS-DSDTES 1073
Score = 49 (22.3 bits), Expect = 9.3e-36, Sum P(4) = 9.3e-36
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 1795 KETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKES 1851
KE A D+ I P H D P+ E K +G EK P +++ KE+
Sbjct: 1331 KENKAPLKDEHGIEFSS---PRHSDNPSEEG--EVKDDGLEKSPTKKKQKKKENKEN 1382
Score = 43 (20.2 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 362 EFEKMCQAES-SDSPKLKEEGLEKSLPT 388
EF +++ S+ ++K++GLEKS PT
Sbjct: 1344 EFSSPRHSDNPSEEGEVKDDGLEKS-PT 1370
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 483 (175.1 bits), Expect = 5.4e-36, Sum P(5) = 5.4e-36
Identities = 112/235 (47%), Positives = 150/235 (63%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEE-VDT-------LIPKHY-LPPIVRLCGKL 62
G++ ++ N++MELR CNHPYL AEE + T +IP + L +VR GKL
Sbjct: 1077 GHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKL 1136
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
++D+LLPKLKA H+VL FS M R LD++EDYL ++Y Y R+DG G R A ID+F
Sbjct: 1137 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 1196
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
++ DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQAQAR HRIGQ + V V
Sbjct: 1197 SKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVY 1256
Query: 183 RFETVQTVEEQVRASAEHKLGVAN---QSITAGFFDNNTSAED-RREYLESLLRE 233
R T + E ++ A KLG+ QS++ G N T + ++ +E LLR+
Sbjct: 1257 RLITRNSYEREMFDKASLKLGLDKAVLQSMS-GRDGNITGIQQFSKKEIEDLLRK 1310
Score = 56 (24.8 bits), Expect = 5.4e-36, Sum P(5) = 5.4e-36
Identities = 25/125 (20%), Positives = 56/125 (44%)
Query: 1063 KTEALKPENKAQAGRIEN--IANS--SPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQ 1118
+T A P ++ ++E+ +A S +P D + + P+ T ++P K ++ +
Sbjct: 2014 ETAAQVPSLESLTLKLEHEVVARSRPTPQDYEMRVAPSDTTPLVSRNVPPVKLEDEDDSD 2073
Query: 1119 NNPEVK-----GEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMET 1173
+ ++ + SS + +ST+ E EK S+ + + L ++ S+T + +
Sbjct: 2074 SELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKLYDEESLLSLTMSQDG 2133
Query: 1174 APGFD 1178
P D
Sbjct: 2134 FPNED 2138
Score = 53 (23.7 bits), Expect = 3.1e-35, Sum P(6) = 3.1e-35
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 1234 DDHSLVKELIHRSPDH-SDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVA 1292
DD ++ E HR D+ SD+V G ED PL+ P + EG + M ++++
Sbjct: 1667 DDKAIAAE--HRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEIS 1724
Score = 50 (22.7 bits), Expect = 1.4e-35, Sum P(5) = 1.4e-35
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 736 PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSEN 793
P +KP E++ V S + + L H+ ++ S TP ++ SDT ++S N
Sbjct: 2007 PVEKPPEETAAQVPSLESLTLKLEHEVVAR-SRPTPQDY---EMRVAPSDTTPLVSRN 2060
Score = 43 (20.2 bits), Expect = 3.1e-35, Sum P(6) = 3.1e-35
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 1808 SIMPEKLPEHLDIPASL----ATPEEKTEGSEKDPDSSFAAQEDPKESVVEA 1855
++ P KL + D + L +P + S SS ED KE + A
Sbjct: 2060 NVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSA 2111
Score = 42 (19.8 bits), Expect = 5.4e-36, Sum P(5) = 5.4e-36
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 YGRGKRAREVRS---YEEQWTEEEFEKMCQA 369
YG G R R++ S ++ + TE + E +C+A
Sbjct: 1457 YGWG-RWRDILSHGRFKRRMTERDVETICRA 1486
Score = 40 (19.1 bits), Expect = 1.4e-35, Sum P(5) = 1.4e-35
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 1036 PGEL---TGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQ---AG--RIENIANSSPD 1087
PG + +G K +R D + + T +L N Q +G + ++ +SS
Sbjct: 2411 PGPIATDSGKKRARRMRPDLSKMMALMQGGGTGSLSLHNTFQHSSSGLQSVSSLGHSSAT 2470
Query: 1088 DKSLPMVP 1095
SLP VP
Sbjct: 2471 SASLPFVP 2478
Score = 40 (19.1 bits), Expect = 1.4e-34, Sum P(5) = 1.4e-34
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 550 AASDDIPSPG---PDPKTNEQPQSES------LNPSGGESTATDGNVSSIPTAPVPDSVS 600
A SD P P K ++ S+S L+PS S+++ + SS +
Sbjct: 2049 APSDTTPLVSRNVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEK 2108
Query: 601 PSAVKGQSGTIDPSSAVAALNSE 623
SA + +S D S ++ S+
Sbjct: 2109 LSADRSRSKLYDEESLLSLTMSQ 2131
Score = 38 (18.4 bits), Expect = 5.4e-36, Sum P(5) = 5.4e-36
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEE 2175
GP + ++ G PVP A+ +A EE
Sbjct: 2196 GPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEE 2232
Score = 38 (18.4 bits), Expect = 5.4e-36, Sum P(5) = 5.4e-36
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 1532 GDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSNALL 1583
G++K ++E C+ + ++++L R + + DG + + E P A L
Sbjct: 2292 GNRKKLVELEVQCMEEPNHLDVDLETRIPVINKVDGTLLVG--EDAPRRAEL 2341
Score = 38 (18.4 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 464 GQSTSASASLPXXXXXXXXXXXAQHV 489
G S++ SASLP + HV
Sbjct: 2465 GHSSATSASLPFVPFVMGGAASSPHV 2490
Score = 37 (18.1 bits), Expect = 5.4e-36, Sum P(5) = 5.4e-36
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2218 TSEGMGGPSPPLVIAEDKTENEIEED 2243
T+ G PPL ED+ + + ++D
Sbjct: 2527 TTSGTALRLPPLQPEEDEDDEDEDDD 2552
Score = 37 (18.1 bits), Expect = 1.3e-34, Sum P(6) = 1.3e-34
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 1879 PPLSLANEEEMIEGFDNDPTGISMAVMDSKECAAEAADQMCVSEGCVVVTEKLSED 1934
PP+ L +E++ D S + S ++ + D+ SE EKLS D
Sbjct: 2062 PPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDE---SED--EKEEKLSAD 2112
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 440 (159.9 bits), Expect = 7.0e-36, Sum P(2) = 7.0e-36
Identities = 93/182 (51%), Positives = 119/182 (65%)
Query: 21 NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVL 80
N V+EL+ CNH L + E+ L L +++ GKL +LD+LL +LK T HRVL
Sbjct: 797 NIVIELKKCCNHAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVL 856
Query: 81 FFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140
FS M R+LDV+ DYL + + + RLDG G R +D FN + S F FLLS RAGG
Sbjct: 857 IFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGG 916
Query: 141 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 200
+G+NL ADTVIIFD+DWNPQ DLQAQARAHRIGQK V + R T ++VEEQ+ A+
Sbjct: 917 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQ 976
Query: 201 KL 202
K+
Sbjct: 977 KM 978
Score = 54 (24.1 bits), Expect = 1.7e-33, Sum P(4) = 1.7e-33
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 1253 VIGNV-PGNTSEDSSKM-PLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPIN 1307
V+G++ P +E KM P++ L K+ + P VS+ D H+R+ + G I+
Sbjct: 1501 VLGDLDPSIFNECKEKMRPVKKAL--KALDQPDVSLSDQDQLQHTRDCLLQIGKQID 1555
Score = 53 (23.7 bits), Expect = 7.0e-36, Sum P(2) = 7.0e-36
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 1822 ASLATPEEKTEGSEKDPDSSFAAQEDPK---ESVVEAGDQMGVSLGGATVMEKSSEDLAT 1878
AS+A EE+ S D + A +ED + ++ G + + K EDL
Sbjct: 1069 ASIAAFEEEPSDSVSKQDQNAAGEEDDSKDWDDIIPEGFRKAID---DQERAKEMEDLYL 1125
Query: 1879 PPL--SLANEEE 1888
PP + AN+ E
Sbjct: 1126 PPRRKTAANQNE 1137
Score = 53 (23.7 bits), Expect = 6.1e-35, Sum P(3) = 6.1e-35
Identities = 38/162 (23%), Positives = 68/162 (41%)
Query: 1585 SSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSE-NMGEKDDISSEHAFGS 1643
S ++ I E AK +VLD H +Q + H S N KDD+S+ FG+
Sbjct: 965 SVEEQIVERAKQKMVLD-HLVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKFGA 1023
Query: 1644 SLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKS 1703
+ +D+ + D + + +D R+ + D + D + + + E
Sbjct: 1024 EELFKDEQEHDD--DLVCD--IDEILRRAETRNEDP--EMPADDLLSAFKVASIAAFE-- 1075
Query: 1704 EELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQ 1745
EE PS S + +++ G D D + ++ E + +I DQ
Sbjct: 1076 EE---PSDSVSKQDQNAAGEEDDSKDWDDIIPEGFRKAIDDQ 1114
Score = 46 (21.3 bits), Expect = 6.1e-35, Sum P(3) = 6.1e-35
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 1760 SDFCQPSSSLAPWEAKIDGSSEKD-PVSSQSVLEGSKETVAEAGDQMDISIMP 1811
S F + + P + + + D +S Q L+ +++ + + G Q+D+ + P
Sbjct: 1508 SIFNECKEKMRPVKKALKALDQPDVSLSDQDQLQHTRDCLLQIGKQIDVCLNP 1560
Score = 46 (21.3 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 20/86 (23%), Positives = 34/86 (39%)
Query: 654 KTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALS 713
K ++GG +GK + P G ++ + + SGG + K +D
Sbjct: 1597 KQKAGG-DGEAKGKDKGSSGSPAKSKPNGVTTEEKEKERDRSGGKKKKKD-----KD--- 1647
Query: 714 QELSNKIQVQPCGVATSADVAGPDQK 739
+E S + + G+ TS A P K
Sbjct: 1648 KERSGQARYPETGIPTSGRYADPPLK 1673
Score = 42 (19.8 bits), Expect = 1.7e-33, Sum P(4) = 1.7e-33
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 894 KRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAK 930
K KT T E P + ++ + S+ G F+AK
Sbjct: 1247 KEEESKTAATDETPGAKQRRARATFSVKLGGVSFNAK 1283
Score = 42 (19.8 bits), Expect = 1.7e-33, Sum P(4) = 1.7e-33
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 524 KGRGRRIQSGEQVPRRRGKKIGLVLPAASDDI-PSPGPDPKTNEQPQSESLNPSGGESTA 582
KG G+R Q + R K +++ D P G D + + +ES N STA
Sbjct: 1391 KG-GQRRQRRPRASRANDAKAASQSASSTIDAKPHDGEDAAGDARTVAESSNSQVDPSTA 1449
Query: 583 TDGN 586
+ N
Sbjct: 1450 SPHN 1453
Score = 40 (19.1 bits), Expect = 1.7e-33, Sum P(4) = 1.7e-33
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 1542 PDCLVASDSVNMELVPRDFGVGRRDGDIE 1570
P + SD ++PRD+ R D E
Sbjct: 1850 PSSVYRSDPRGYPVMPRDYPADYRRSDYE 1878
Score = 38 (18.4 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 2168 ASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
AS A EEE ++ K+ ++ + +SK+
Sbjct: 1069 ASIAAFEEEPSDSVSKQDQNAAGEEDDSKD 1098
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 431 (156.8 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 91/194 (46%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 722 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 778
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 779 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 838
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 839 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 898
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 899 SVEEDILERAKKKM 912
Score = 60 (26.2 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 2079 EANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESK 2138
EA + A GG+ R+ + S V+EE ++ S P+ SEK DE
Sbjct: 1303 EAQRLSGA--GGSKRRKARAKKNKAMKSIKVKEE-MKSDSSPLPSEKS--------DEDD 1351
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAE-EEKNECSDKEPVGSSVSQIESKE 2197
D E++S + + EE P F+ E EEK E +KE +I+ KE
Sbjct: 1352 DKD-EITS-VKHPNKKIKTERDSEERPEPDVFIKKESEEKREAKEKENKRELKREIKEKE 1409
Score = 58 (25.5 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 34/154 (22%), Positives = 59/154 (38%)
Query: 1779 SSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEK-LPEHLDIPASLATPEEKTEGSEKD 1837
S EK + K + E D+ DI EK E + A +EK EK
Sbjct: 1386 SEEKREAKEKENKRELKREIKEKEDKKDIK---EKDFKEKRENKVKEAIQKEKDIKEEKL 1442
Query: 1838 PDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANE-----EEMIEG 1892
+S ++E K+S V + G + + SE+L S+ E + ++
Sbjct: 1443 NESKSESKERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQ 1502
Query: 1893 FDNDPTGISMA--VMDSKECAAEAADQM--CVSE 1922
D G+S + +++C + D + C+ E
Sbjct: 1503 LDRPEKGLSEREQLEHTRQCLIKIGDHITECLKE 1536
Score = 52 (23.4 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 22/97 (22%), Positives = 42/97 (43%)
Query: 2108 DVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADG- 2166
D++E+ + K KE+I + E K +++ S+ + V PV A G
Sbjct: 1413 DIKEKDFK--EKRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSVSDAPVHITASGE 1470
Query: 2167 PASFLAAEEEKNE-----CSDK-EPVGSSVSQIESKE 2197
P EE ++ C ++ PV +++ Q++ E
Sbjct: 1471 PVPISEESEELDQKTFSICKERMRPVKAALKQLDRPE 1507
Score = 47 (21.6 bits), Expect = 2.3e-34, Sum P(2) = 2.3e-34
Identities = 43/217 (19%), Positives = 86/217 (39%)
Query: 1621 VPEHKSENMGEKDDISS-EHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDE 1679
+P KS+ +KD+I+S +H + + ++ SE + P+ D F + E
Sbjct: 1342 LPSEKSDEDDDKDEITSVKHP--NKKIKTERDSE-------ERPEPDVFIKKE-----SE 1387
Query: 1680 LVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSK 1739
EA + + E+E +++ +E K+ ++ K+ D L +SK
Sbjct: 1388 EKREAKEKENKRELKREIKEKEDKKDIKEKDFKEK-RENKVKEAIQKEKDIKEEKLNESK 1446
Query: 1740 G---------SIGDQ-MDCCQSGVVVP--ENLSDFCQPSSSLA-----PWEAKIDGSSEK 1782
S+ D + SG VP E + Q + S+ P +A +
Sbjct: 1447 SESKERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRP 1506
Query: 1783 DP-VSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHL 1818
+ +S + LE +++ + + GD + + PE +
Sbjct: 1507 EKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQI 1543
Score = 47 (21.6 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 51/213 (23%), Positives = 84/213 (39%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHS----PVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH P+H
Sbjct: 1157 GCIKALKDNSSGTERTGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELIPLH 1207
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQS 1751
EE ++ TK D K+ DSNL++ E GS I D +
Sbjct: 1208 KSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLT 1267
Query: 1752 GVVVPENLSDFCQPSS--SLAPWEAKI-DGSSEKDPVSSQSVLEGSKETVAEAGDQMDIS 1808
++P++ Q + A + K+ K S GSK A A + + +
Sbjct: 1268 HKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKEAQRLSGAGGSKRRKARA--KKNKA 1325
Query: 1809 IMPEKLPEHLDIPASLATPEEKTEGSEKDPDSS 1841
+ K+ E + +S E+ E +KD +S
Sbjct: 1326 MKSIKVKEEMKSDSSPLPSEKSDEDDDKDEITS 1358
Score = 46 (21.3 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 1695 VHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSK 1739
+ V E KS+ LPS S ++K + + K P+ + DS+
Sbjct: 1329 IKVKEEMKSDSSPLPSEKSDEDDDKDEITSVKHPNKKIKTERDSE 1373
Score = 46 (21.3 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 35/180 (19%), Positives = 70/180 (38%)
Query: 1114 QSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMET 1173
++R + N +K + V E + + EK + + +K E
Sbjct: 1317 KARAKKNKAMKSIK--VKEEMKSDSSPLPSEKSDEDDDKDEITSVKHPNKKIKTERDSEE 1374
Query: 1174 APGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTV 1233
P D+ I+K E+ +AK K L E + + E+K D +++ +
Sbjct: 1375 RPEPDVFIKKESEEKR---EAKEKENKRELKRE-------IKEKEDKKD---IKEKDFKE 1421
Query: 1234 DDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL-ETPL-IMKSTEGPSVSMKADDV 1291
+ VKE I + D + + + E S K + + P+ I S E +S +++++
Sbjct: 1422 KRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPISEESEEL 1481
Score = 43 (20.2 bits), Expect = 3.2e-32, Sum P(3) = 3.2e-32
Identities = 35/157 (22%), Positives = 56/157 (35%)
Query: 1034 ENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPM 1093
++P + T+ D+ R + K EA + ENK + R D K
Sbjct: 1360 KHPNKKIKTERDSEERPEPDVFIKKESEEKREAKEKENKRELKREIKEKEDKKDIKEKDF 1419
Query: 1094 VPNLETAPPGFDIPIEKH-NEQSRNQNNPEVKGEETPVS-SEAPAS-TEAFEQEKVTNTS 1150
E I EK E+ N++ E K S S+AP T + E ++ S
Sbjct: 1420 KEKRENKVKEA-IQKEKDIKEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPISEES 1478
Query: 1151 SFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQ 1187
++ S + + P D P EKG+ +
Sbjct: 1479 EELDQKTFSICKER--MRPVKAALKQLDRP-EKGLSE 1512
Score = 42 (19.8 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 11/56 (19%), Positives = 27/56 (48%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 401
KR +V+ ++ + + EK+ +++S + K+ + + + +S P S E
Sbjct: 1422 KRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPISEE 1477
Score = 38 (18.4 bits), Expect = 3.2e-32, Sum P(3) = 3.2e-32
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 1244 HRSPDHSDMVIGNVPGNTSED 1264
HRS DH + G++ + D
Sbjct: 1682 HRSRDHRSNLEGSIKDRSHSD 1702
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 461 (167.3 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 97/228 (42%), Positives = 143/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 885 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLML 944
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 945 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1004
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1005 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1064
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1065 VTRASVEERITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1110
Score = 45 (20.9 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 1213 EVFKPENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHSD 1251
E+FK + + D VE D + + +L+ R+ D +D
Sbjct: 1115 ELFKDDVEGDNKDVEDSSVIHYDDAAISKLLDRNQDATD 1153
Score = 45 (20.9 bits), Expect = 3.4e-35, Sum P(5) = 3.4e-35
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSEKDP 1838
+ ++ E LPE I L T + K E EK+P
Sbjct: 1520 VGLLKEVLPEKEKILDKLETDDTKAE--EKEP 1549
Score = 45 (20.9 bits), Expect = 3.4e-35, Sum P(5) = 3.4e-35
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS 598
N + + L P G E +SS P PVP S
Sbjct: 1400 NGKYSTPDLIPEGPEGKKPGEVISSDPNTPVPAS 1433
Score = 45 (20.9 bits), Expect = 3.4e-35, Sum P(5) = 3.4e-35
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 263 ESVDKQRREEEMATWRKLIRGLGTDGE-PLPPLPSRLVTDDDLKALYEAMK---IYDAPK 318
E D + R E + R+ R L +D + PLPPL +R+ + ++ + + +
Sbjct: 1258 EDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMR 1317
Query: 319 TGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLK 378
G+ P H D RGK +E R+Y + E + + +
Sbjct: 1318 WGMPPQDAFN---SHWLVRDL----RGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVP 1370
Query: 379 EEGLEK 384
EGL +
Sbjct: 1371 REGLSR 1376
Score = 42 (19.8 bits), Expect = 4.4e-34, Sum P(6) = 4.4e-34
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 340 QHYGRGKRAREVRSY------EEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
++ G+GKR R+ +Y +++W +E + Q+E S + ++E E+
Sbjct: 1216 RNLGKGKRIRKQVNYNDASQEDQEWQDELSDN--QSEYSIGSEDEDEDFEE 1264
Score = 42 (19.8 bits), Expect = 8.8e-34, Sum P(6) = 8.8e-34
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 2116 GFSKPVGSEKESIASAVPLDESKGPDAE 2143
G K V EKE I + D++K + E
Sbjct: 1521 GLLKEVLPEKEKILDKLETDDTKAEEKE 1548
Score = 40 (19.1 bits), Expect = 3.4e-35, Sum P(5) = 3.4e-35
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 1019 TPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRI 1078
TP +P +P PG G N+ ++ G V G K E+ + +A+ R+
Sbjct: 1428 TPVPASPAHLLPAPPGLPG--LGA-NEQALDG----VEGE---DKHESSDGKERAREERL 1477
Query: 1079 ENIANSSPDDKSLP 1092
E + P + LP
Sbjct: 1478 EEAEKAQPSPEQLP 1491
Score = 40 (19.1 bits), Expect = 9.0e-34, Sum P(5) = 9.0e-34
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSE-KDPDSSFAAQEDPKESV 1852
+S++ +K+ E + +TP+ EG E K P ++ DP V
Sbjct: 1386 MSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKPGEVISS--DPNTPV 1430
Score = 37 (18.1 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPM 2206
E +D + + E+++E ++ P G S + ++ ++ +P+
Sbjct: 1243 ELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDKPL 1287
Score = 37 (18.1 bits), Expect = 4.4e-34, Sum P(6) = 4.4e-34
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 522 QPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDI 555
+P+G+ R QS Q+ R K + +L +I
Sbjct: 1265 RPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNI 1298
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 433 (157.5 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 91/194 (46%), Positives = 128/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + ++ + + L ++R GKL +LD+L
Sbjct: 736 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDDNEFYNKQEALQHLIRSSGKLILLDKL 792
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 793 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 852
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 853 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 912
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 913 SVEEDILERAKKKM 926
Score = 64 (27.6 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 1216 KPENKTDGDSVEKLEDTV--DDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL-ET 1272
K NK + K+++ + D E D D + + E S K+PL +T
Sbjct: 1331 KTRNKKNKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNKVNEIKSENKEKSKKIPLLDT 1390
Query: 1273 PLIMKSTEGP-SVSMKADDV 1291
P+ + +T P +S +++++
Sbjct: 1391 PVHITATSEPVPISEESEEL 1410
Score = 49 (22.3 bits), Expect = 5.9e-34, Sum P(3) = 5.9e-34
Identities = 24/86 (27%), Positives = 34/86 (39%)
Query: 1110 KHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTP 1169
K N+ ++ E+K + +P SE + E KV S N S TP
Sbjct: 1335 KKNKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNKVNEIKS-ENKE--KSKKIPLLDTP 1391
Query: 1170 AMETAPGFDIPIEKGVEQSGTEIDAK 1195
TA +PI E+S E+D K
Sbjct: 1392 VHITATSEPVPIS---EES-EELDQK 1413
Score = 46 (21.3 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 27/114 (23%), Positives = 46/114 (40%)
Query: 1713 SATKEEKIDGSLDKDPDSNLVV-LEDSKGSIGDQMDCCQSGVVVPE-NLSDFCQPSSSL- 1769
S +K K+D +D SNL L+DS+G D + + S++ SS
Sbjct: 1602 SDSKHRKLDDHRSRDHRSNLEGNLKDSRGH-SDHRSHSDHRIHSDHRSTSEYSHHKSSRD 1660
Query: 1770 ----APWEA--KIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEH 1817
+ W+ + GS + P+ +S GS+ + + S + PEH
Sbjct: 1661 YRYHSDWQMDHRASGSGPRSPLDQRSPY-GSRSPLGHRSP-FEHSSDHKSTPEH 1712
Score = 42 (19.8 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 28/98 (28%), Positives = 42/98 (42%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSH----SPVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH +P+H
Sbjct: 1171 GCIKALKDNSSGQERAGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELAPLH 1221
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV 1734
EE + TK D K+ DSNL+V
Sbjct: 1222 KSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLV 1259
Score = 40 (19.1 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 2232 AEDKTENEIEEDPVVNSVAVEESKGSE 2258
+E E++ EED VN + E + S+
Sbjct: 1357 SEKSDEDDDEEDNKVNEIKSENKEKSK 1383
Score = 37 (18.1 bits), Expect = 5.1e-33, Sum P(3) = 5.1e-33
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1244 HRSPDHSDMVIGNV 1257
HRS DH + GN+
Sbjct: 1612 HRSRDHRSNLEGNL 1625
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 431 (156.8 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 91/194 (46%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 752 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 808
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 809 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 868
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 869 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 928
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 929 SVEEDILERAKKKM 942
Score = 63 (27.2 bits), Expect = 2.9e-34, Sum P(3) = 2.9e-34
Identities = 35/156 (22%), Positives = 67/156 (42%)
Query: 1781 EKDPVSSQSVLE--GSKETVAEAGDQMDISIMPEK-LPEHLDIPASLATPEEKTEGSEKD 1837
+K+P + E +E E ++ D + EK E + A +EK EK
Sbjct: 1411 KKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKL 1470
Query: 1838 PDSSFAAQE-DPKESVVEAGDQMGVSLGGATV-MEKSSEDLATPPLSLANE-----EEMI 1890
+S ++E K SV++A + ++ GG V + + SE+L S+ E + +
Sbjct: 1471 SESKSESKERSKKSSVLDA--PVHITAGGEPVPIAEESEELDQKTFSICKERMRPVKAAL 1528
Query: 1891 EGFDNDPTGISMA--VMDSKECAAEAADQM--CVSE 1922
+ D G+S + +++C + D + C+ E
Sbjct: 1529 KQLDRPERGLSEREQLEHTRQCLIKIGDHITECLKE 1564
Score = 56 (24.8 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 29/122 (23%), Positives = 49/122 (40%)
Query: 1695 VHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVV 1754
+ V E KS+ LPS S ++K + + K P+ + DS+ + D C
Sbjct: 1357 IKVKEEIKSDSSPLPSDKSDEDDDKDEITSVKHPNKKIKTERDSEEKT--EPDVCIKKE- 1413
Query: 1755 VPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKL 1814
PE + + + + +I +K + + E + V EA Q + I EKL
Sbjct: 1414 -PEEKRE-AKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEA-IQKEKDIKEEKL 1470
Query: 1815 PE 1816
E
Sbjct: 1471 SE 1472
Score = 56 (24.8 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
Identities = 22/97 (22%), Positives = 44/97 (45%)
Query: 2108 DVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGP 2167
D++E+ + K KE+I + E K +++ S+ + V+ PV A G
Sbjct: 1441 DIKEKDFK--EKRENKVKEAIQKEKDIKEEKLSESKSESKERSKKSSVLDAPVHITAGGE 1498
Query: 2168 ASFLAAEEEKNE------CSDK-EPVGSSVSQIESKE 2197
+A E E+ + C ++ PV +++ Q++ E
Sbjct: 1499 PVPIAEESEELDQKTFSICKERMRPVKAALKQLDRPE 1535
Score = 52 (23.4 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 33/120 (27%), Positives = 49/120 (40%)
Query: 2079 EANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESK 2138
EA + A GG+ R+ + S V+EE I+ S P+ S+K DE
Sbjct: 1331 EAQRLSGA--GGSKRRKARAKKNKAMKSIKVKEE-IKSDSSPLPSDKS--------DEDD 1379
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAE-EEKNECSDKEPVGSSVSQIESKE 2197
D E++S + + EE P + E EEK E +KE +I+ KE
Sbjct: 1380 DKD-EITS-VKHPNKKIKTERDSEEKTEPDVCIKKEPEEKREAKEKENKRELKREIKEKE 1437
Score = 40 (19.1 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 1244 HRSPDHSDMVIGNVPGNTSED 1264
HRS DH + G++ T D
Sbjct: 1710 HRSRDHRSNLEGSLKDRTHSD 1730
Score = 40 (19.1 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 1554 ELVPRDFGVGRRDGDIEIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGAD 1613
++ +DF R + E E LS SK E +K VLD V + G +
Sbjct: 1441 DIKEKDFKEKRENKVKEAIQKEKDIKEEKLSESKSESKERSKKSSVLD--APVHITAGGE 1498
Query: 1614 NPEGGVIVPEHKSENMGEK 1632
P V + E +SE + +K
Sbjct: 1499 -P---VPIAE-ESEELDQK 1512
Score = 38 (18.4 bits), Expect = 2.9e-34, Sum P(3) = 2.9e-34
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 1621 VPEHKSENMGEKDDISS 1637
+P KS+ +KD+I+S
Sbjct: 1370 LPSDKSDEDDDKDEITS 1386
Score = 38 (18.4 bits), Expect = 2.9e-34, Sum P(3) = 2.9e-34
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 1694 PVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV 1734
P+H EE + TK D K+ DSNL++
Sbjct: 1233 PLHKSIPSDPEERKQYIIPCHTKAAHFDIDWGKEDDSNLLI 1273
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 460 (167.0 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 97/228 (42%), Positives = 143/228 (62%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 967 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPMLPNGSYDGSSLVKSSGKLML 1026
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 1027 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1086
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ + V++ RF
Sbjct: 1087 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1146
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ A+ K+ + + + G + S ++ L+ +L+
Sbjct: 1147 VTRASVEERITQVAKRKMMLTHLVVRPGL--GSKSGSMTKQELDDILK 1192
Score = 45 (20.9 bits), Expect = 6.4e-35, Sum P(4) = 6.4e-35
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS 598
N + + L P G E +SS P PVP S
Sbjct: 1519 NGKYSTPDLVPEGPEGKKPGEVISSDPNTPVPAS 1552
Score = 45 (20.9 bits), Expect = 6.4e-35, Sum P(4) = 6.4e-35
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 263 ESVDKQRREEEMATWRKLIRGLGTDGE-PLPPLPSRLVTDDDLKALYEAMK---IYDAPK 318
E D + R E + R+ R L +D + PLPPL +R+ + ++ + + +
Sbjct: 1377 EDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMR 1436
Query: 319 TGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLK 378
G+ P H D RGK +E R+Y + E + + +
Sbjct: 1437 WGMPPQDAFN---SHWLVRDL----RGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVP 1489
Query: 379 EEGLEK 384
EGL +
Sbjct: 1490 REGLSR 1495
Score = 44 (20.5 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 360 EEEFEKMCQAESSDSPKLKEEGLEKSLP 387
EE E++ +A+ S LKEE L P
Sbjct: 1617 EERMEEVEKAQGSPEQPLKEETLPDKEP 1644
Score = 42 (19.8 bits), Expect = 8.6e-34, Sum P(4) = 8.6e-34
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSE-KDPDSSFAAQEDPKESVVEAGDQM 1859
+S++ +K+ E + +TP+ EG E K P ++ DP V + Q+
Sbjct: 1505 MSLVRKKVQEFEHVNGKYSTPDLVPEGPEGKKPGEVISS--DPNTPVPASPAQL 1556
Score = 42 (19.8 bits), Expect = 1.1e-32, Sum P(6) = 1.1e-32
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 340 QHYGRGKRAREVRSY------EEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
++ G+GKR R+ +Y +++W +E + Q+E S + ++E E+
Sbjct: 1335 RNLGKGKRIRKQVNYNDASQEDQEWQDELSDN--QSEYSIGSEDEDEDFEE 1383
Score = 40 (19.1 bits), Expect = 6.4e-35, Sum P(4) = 6.4e-35
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 2105 SSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPD 2141
S EE++E K GS ++ + D+ PD
Sbjct: 1611 SKDRAREERMEEVEKAQGSPEQPLKEETLPDKEPVPD 1647
Score = 39 (18.8 bits), Expect = 1.4e-32, Sum P(6) = 1.4e-32
Identities = 23/89 (25%), Positives = 39/89 (43%)
Query: 766 PSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGV------IPILALSNMKAVERVNIQS 819
P ++PAQ+P LG + + L + G + I AL A++RV
Sbjct: 1548 PVPASPAQLPPAPLG-LPDKMEAQLGYTDEKESGTQKPKKSLEIQALPT--ALDRVEA-- 1602
Query: 820 FEEKACTNASKSKATLPALDSITEPYTGS 848
E+K ++ SK +A ++ + E GS
Sbjct: 1603 -EDKHQSSDSKDRAREERMEEV-EKAQGS 1629
Score = 38 (18.4 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 254 RSESEIDVFE-SVDKQRREEEMATWRKLIR 282
R E ++ E V KQ + W KL+R
Sbjct: 1294 REEDGVEEVEREVIKQEENVDPDYWEKLLR 1323
Score = 37 (18.1 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPM 2206
E +D + + E+++E ++ P G S + ++ ++ +P+
Sbjct: 1362 ELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDKPL 1406
Score = 37 (18.1 bits), Expect = 8.6e-34, Sum P(4) = 8.6e-34
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 1213 EVFKPENKTDGDSVEKL 1229
EV K E D D EKL
Sbjct: 1305 EVIKQEENVDPDYWEKL 1321
Score = 37 (18.1 bits), Expect = 1.1e-32, Sum P(6) = 1.1e-32
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 522 QPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDI 555
+P+G+ R QS Q+ R K + +L +I
Sbjct: 1384 RPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNI 1417
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 438 (159.2 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 95/218 (43%), Positives = 139/218 (63%)
Query: 18 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKA 74
S+ N +MEL+ CNHPYL + AE ++ K+ + +++ GK +L ++L KLK
Sbjct: 883 SLMNVLMELKKCCNHPYLF-VKAE-LEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKD 940
Query: 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134
HRVL FS MTR+LD+MED ++ YRY R+DG G R ID++N + FIFLL
Sbjct: 941 GGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLL 1000
Query: 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 194
S RAGG+G+NL ADTVII+D+DWNP D+QA +RAHR+GQK V++ RF T ++VEE++
Sbjct: 1001 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKI 1060
Query: 195 RASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
+ A+ K+ + + + AG + E L+ +LR
Sbjct: 1061 TSVAKKKMLLNHLVVRAGLGGKEGKTMSKTE-LDDVLR 1097
Score = 62 (26.9 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 1262 SEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINS--GTECSTVSVKT 1319
SE+ +M + P+ + EG V + DD S E P + + +NS + + S
Sbjct: 1743 SENGERMEEDEPVEAEEEEG--VKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPSTSAAA 1800
Query: 1320 DVGNHPQ-NVEPTSASPE 1336
V + + EP SA +
Sbjct: 1801 AVSSETAADAEPASAEDQ 1818
Score = 54 (24.1 bits), Expect = 5.3e-35, Sum P(5) = 5.3e-35
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 324 NVGVKRKG---EH-LGALDTQHYGRGKRAREVRSYEEQWTEEEFEK---------MCQAE 370
N GV R+G +H LG + R ++ +E Y QW+ E + Q
Sbjct: 1365 NDGVPREGLNRQHVLGRIGLLSLVR-RKVQEFEQYNGQWSMPEIQDEVLAKAANGSAQGS 1423
Query: 371 SSDSPKLKEEGLEKSL 386
S +PK KEE E+ +
Sbjct: 1424 SRSTPKPKEEPKEEPM 1439
Score = 51 (23.0 bits), Expect = 5.4e-35, Sum P(3) = 5.4e-35
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESK-GPEVEPCVQMDVRGDGI--VPET 2036
E ++E+E E E++ + DDE++ E P + +V D VP T
Sbjct: 1747 ERMEEDEPVEAE-EEEGVKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPST 1796
Score = 51 (23.0 bits), Expect = 9.5e-34, Sum P(3) = 9.5e-34
Identities = 30/112 (26%), Positives = 47/112 (41%)
Query: 296 SRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKG--EHLGALDTQHYGR-GKRARE-- 350
SRL T D+ A+ + P V+P + + G AL ++ G+R E
Sbjct: 1696 SRLTTKDE-DAIANR-SVLPPPGPFVTPILRQQMDGIQPKFAALYSKFMSENGERMEEDE 1753
Query: 351 -VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 401
V + EE+ ++E + Q + P L E V S+SA A S+E
Sbjct: 1754 PVEAEEEEGVKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPSTSAAAAVSSE 1805
Score = 50 (22.7 bits), Expect = 5.4e-35, Sum P(3) = 5.4e-35
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1575 EGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPE 1616
EG S +++++I+ + A D +LD K + G D E
Sbjct: 1112 EGEGSEKKGAAAQEIVWDDAAVDALLDRSNKEETPAGEDGEE 1153
Score = 50 (22.7 bits), Expect = 1.6e-34, Sum P(6) = 1.6e-34
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 337 LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373
++ Q G+GKR R+ +Y + ++ K Q + D
Sbjct: 1215 IELQKLGKGKRVRKQINYASENMGTDWSKQNQTQDDD 1251
Score = 49 (22.3 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 29/124 (23%), Positives = 45/124 (36%)
Query: 734 AGPD-QKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSE 792
AG D ++ AE + S + + + +V D D E L +
Sbjct: 1147 AGEDGEEKAEWQNEYLSSFKVASYQTKETEGQEEEEEEETEVIKEDEKEPDPDYWEKLLK 1206
Query: 793 NSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYTGSTNTE 852
+ + I + L K V R I E T+ SK T D E Y GS N +
Sbjct: 1207 HHYEQDREIELQKLGKGKRV-RKQINYASENMGTDWSKQNQTQDD-DDDNESYRGSDNGD 1264
Query: 853 GISN 856
G+++
Sbjct: 1265 GLNS 1268
Score = 48 (22.0 bits), Expect = 4.2e-33, Sum P(6) = 4.2e-33
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 1105 DIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKT 1164
D P+E E+ Q P+ +ET S+EAP A +N + A S +
Sbjct: 1752 DEPVEAEEEEGVKQE-PD---DETQDSAEAPPVLSAEVNSDDSNDVPSTSAAAAVSSETA 1807
Query: 1165 CSVTPA 1170
PA
Sbjct: 1808 ADAEPA 1813
Score = 46 (21.3 bits), Expect = 5.3e-35, Sum P(5) = 5.3e-35
Identities = 26/105 (24%), Positives = 45/105 (42%)
Query: 739 KPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKG 798
K EQS+ V++ + + A + QP P DL N+A + E+S+
Sbjct: 1590 KLIEQSL-VIE--EQLRRAAHANRHLQPDNVGPLAQRFADLENIAESQANIAKESSAGNR 1646
Query: 799 GVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+L + V+ I S + KA + S+ +T L ++TE
Sbjct: 1647 NANAVL---HKTLVQLDEILS-DMKA--DVSRLPSTFTQLATVTE 1685
Score = 45 (20.9 bits), Expect = 1.6e-34, Sum P(6) = 1.6e-34
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 551 ASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVK 605
+S P P +PK + ++ G ++ + S APV + + K
Sbjct: 1423 SSRSTPKPKEEPKEEPMEKEDATETVNGATSEPATDAESEQNAPVDEPMDTDEAK 1477
Score = 41 (19.5 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 1182 EKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKE 1241
++G S TE+D ++W L E + A E E K G + +++ V D + V
Sbjct: 1082 KEGKTMSKTELDDVLRWGTEELFSEDLDAA-EGEGSEKK--GAAAQEI---VWDDAAVDA 1135
Query: 1242 LIHRS 1246
L+ RS
Sbjct: 1136 LLDRS 1140
Score = 41 (19.5 bits), Expect = 2.2e-34, Sum P(5) = 2.2e-34
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 343 GRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKS--LPTVVSSSAPAVYST 400
G G + + E W + + + + + E+G EK+ +SS A Y T
Sbjct: 1113 GEGSEKKGAAAQEIVWDDAAVDALLDRSNKEETPAGEDGEEKAEWQNEYLSSFKVASYQT 1172
Query: 401 E 401
+
Sbjct: 1173 K 1173
Score = 40 (19.1 bits), Expect = 6.2e-33, Sum P(4) = 6.2e-33
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFE 2204
E +G S A + E + PV + E+KEP+ + E
Sbjct: 1446 ETVNGATSEPATDAESEQ---NAPVDEPMDTDEAKEPKEEPIE 1485
Score = 38 (18.4 bits), Expect = 5.3e-35, Sum P(5) = 5.3e-35
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 254 RSESEIDVFESVDKQRREEEMATWRKLIR 282
+ E E + E + + +E + W KL++
Sbjct: 1178 QEEEEEEETEVIKEDEKEPDPDYWEKLLK 1206
Score = 38 (18.4 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1182 EKGVEQSGTEIDAKVKWKNTPLPGEAIV 1209
E G E +G++I AK + L +++V
Sbjct: 1570 EVGAEATGSDIKAKFMQRRFKLIEQSLV 1597
Score = 38 (18.4 bits), Expect = 9.9e-33, Sum P(4) = 9.9e-33
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 2106 SSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSI 2158
++D E E+ +P+ +++ P++ K A S + I GG +
Sbjct: 1456 ATDAESEQNAPVDEPMDTDEAKEPKEEPIETEKPRAARPSFKFNICDGGFTEL 1508
Score = 37 (18.1 bits), Expect = 5.4e-32, Sum P(6) = 5.4e-32
Identities = 25/120 (20%), Positives = 43/120 (35%)
Query: 1025 PPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANS 1084
PPPG P P + + D ++ + ++ E ++ + +A E +
Sbjct: 1713 PPPG---PFVTP--ILRQQMDG-IQPKFAALYSKFMSENGERMEEDEPVEAEEEEGV-KQ 1765
Query: 1085 SPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQE 1144
PDD++ + APP + S + N+ VSSE A E E
Sbjct: 1766 EPDDET----QDSAEAPPVLSAEVN-----SDDSNDVPSTSAAAAVSSETAADAEPASAE 1816
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 438 (159.2 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 95/218 (43%), Positives = 139/218 (63%)
Query: 18 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKA 74
S+ N +MEL+ CNHPYL + AE ++ K+ + +++ GK +L ++L KLK
Sbjct: 883 SLMNVLMELKKCCNHPYLF-VKAE-LEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKD 940
Query: 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134
HRVL FS MTR+LD+MED ++ YRY R+DG G R ID++N + FIFLL
Sbjct: 941 GGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLL 1000
Query: 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 194
S RAGG+G+NL ADTVII+D+DWNP D+QA +RAHR+GQK V++ RF T ++VEE++
Sbjct: 1001 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKI 1060
Query: 195 RASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
+ A+ K+ + + + AG + E L+ +LR
Sbjct: 1061 TSVAKKKMLLNHLVVRAGLGGKEGKTMSKTE-LDDVLR 1097
Score = 62 (26.9 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 1262 SEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINS--GTECSTVSVKT 1319
SE+ +M + P+ + EG V + DD S E P + + +NS + + S
Sbjct: 1743 SENGERMEEDEPVEAEEEEG--VKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPSTSAAA 1800
Query: 1320 DVGNHPQ-NVEPTSASPE 1336
V + + EP SA +
Sbjct: 1801 AVSSETAADAEPASAEDQ 1818
Score = 54 (24.1 bits), Expect = 5.3e-35, Sum P(5) = 5.3e-35
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 324 NVGVKRKG---EH-LGALDTQHYGRGKRAREVRSYEEQWTEEEFEK---------MCQAE 370
N GV R+G +H LG + R ++ +E Y QW+ E + Q
Sbjct: 1365 NDGVPREGLNRQHVLGRIGLLSLVR-RKVQEFEQYNGQWSMPEIQDEVLAKAANGSAQGS 1423
Query: 371 SSDSPKLKEEGLEKSL 386
S +PK KEE E+ +
Sbjct: 1424 SRSTPKPKEEPKEEPM 1439
Score = 51 (23.0 bits), Expect = 5.4e-35, Sum P(3) = 5.4e-35
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 1989 ETVQEEEKTELSCEKQPIGSSVDDESK-GPEVEPCVQMDVRGDGI--VPET 2036
E ++E+E E E++ + DDE++ E P + +V D VP T
Sbjct: 1747 ERMEEDEPVEAE-EEEGVKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPST 1796
Score = 51 (23.0 bits), Expect = 9.5e-34, Sum P(3) = 9.5e-34
Identities = 30/112 (26%), Positives = 47/112 (41%)
Query: 296 SRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKG--EHLGALDTQHYGR-GKRARE-- 350
SRL T D+ A+ + P V+P + + G AL ++ G+R E
Sbjct: 1696 SRLTTKDE-DAIANR-SVLPPPGPFVTPILRQQMDGIQPKFAALYSKFMSENGERMEEDE 1753
Query: 351 -VRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 401
V + EE+ ++E + Q + P L E V S+SA A S+E
Sbjct: 1754 PVEAEEEEGVKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPSTSAAAAVSSE 1805
Score = 50 (22.7 bits), Expect = 5.4e-35, Sum P(3) = 5.4e-35
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1575 EGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPE 1616
EG S +++++I+ + A D +LD K + G D E
Sbjct: 1112 EGEGSEKKGAAAQEIVWDDAAVDALLDRSNKEETPAGEDGEE 1153
Score = 50 (22.7 bits), Expect = 1.6e-34, Sum P(6) = 1.6e-34
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 337 LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373
++ Q G+GKR R+ +Y + ++ K Q + D
Sbjct: 1215 IELQKLGKGKRVRKQINYASENMGTDWSKQNQTQDDD 1251
Score = 49 (22.3 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 29/124 (23%), Positives = 45/124 (36%)
Query: 734 AGPD-QKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSE 792
AG D ++ AE + S + + + +V D D E L +
Sbjct: 1147 AGEDGEEKAEWQNEYLSSFKVASYQTKETEGQEEEEEEETEVIKEDEKEPDPDYWEKLLK 1206
Query: 793 NSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYTGSTNTE 852
+ + I + L K V R I E T+ SK T D E Y GS N +
Sbjct: 1207 HHYEQDREIELQKLGKGKRV-RKQINYASENMGTDWSKQNQTQDD-DDDNESYRGSDNGD 1264
Query: 853 GISN 856
G+++
Sbjct: 1265 GLNS 1268
Score = 48 (22.0 bits), Expect = 4.2e-33, Sum P(6) = 4.2e-33
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 1105 DIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKT 1164
D P+E E+ Q P+ +ET S+EAP A +N + A S +
Sbjct: 1752 DEPVEAEEEEGVKQE-PD---DETQDSAEAPPVLSAEVNSDDSNDVPSTSAAAAVSSETA 1807
Query: 1165 CSVTPA 1170
PA
Sbjct: 1808 ADAEPA 1813
Score = 46 (21.3 bits), Expect = 5.3e-35, Sum P(5) = 5.3e-35
Identities = 26/105 (24%), Positives = 45/105 (42%)
Query: 739 KPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKG 798
K EQS+ V++ + + A + QP P DL N+A + E+S+
Sbjct: 1590 KLIEQSL-VIE--EQLRRAAHANRHLQPDNVGPLAQRFADLENIAESQANIAKESSAGNR 1646
Query: 799 GVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITE 843
+L + V+ I S + KA + S+ +T L ++TE
Sbjct: 1647 NANAVL---HKTLVQLDEILS-DMKA--DVSRLPSTFTQLATVTE 1685
Score = 45 (20.9 bits), Expect = 1.6e-34, Sum P(6) = 1.6e-34
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 551 ASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVK 605
+S P P +PK + ++ G ++ + S APV + + K
Sbjct: 1423 SSRSTPKPKEEPKEEPMEKEDATETVNGATSEPATDAESEQNAPVDEPMDTDEAK 1477
Score = 41 (19.5 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 1182 EKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVKE 1241
++G S TE+D ++W L E + A E E K G + +++ V D + V
Sbjct: 1082 KEGKTMSKTELDDVLRWGTEELFSEDLDAA-EGEGSEKK--GAAAQEI---VWDDAAVDA 1135
Query: 1242 LIHRS 1246
L+ RS
Sbjct: 1136 LLDRS 1140
Score = 41 (19.5 bits), Expect = 2.2e-34, Sum P(5) = 2.2e-34
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 343 GRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKS--LPTVVSSSAPAVYST 400
G G + + E W + + + + + E+G EK+ +SS A Y T
Sbjct: 1113 GEGSEKKGAAAQEIVWDDAAVDALLDRSNKEETPAGEDGEEKAEWQNEYLSSFKVASYQT 1172
Query: 401 E 401
+
Sbjct: 1173 K 1173
Score = 40 (19.1 bits), Expect = 6.2e-33, Sum P(4) = 6.2e-33
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFE 2204
E +G S A + E + PV + E+KEP+ + E
Sbjct: 1446 ETVNGATSEPATDAESEQ---NAPVDEPMDTDEAKEPKEEPIE 1485
Score = 38 (18.4 bits), Expect = 5.3e-35, Sum P(5) = 5.3e-35
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 254 RSESEIDVFESVDKQRREEEMATWRKLIR 282
+ E E + E + + +E + W KL++
Sbjct: 1178 QEEEEEEETEVIKEDEKEPDPDYWEKLLK 1206
Score = 38 (18.4 bits), Expect = 1.1e-34, Sum P(4) = 1.1e-34
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1182 EKGVEQSGTEIDAKVKWKNTPLPGEAIV 1209
E G E +G++I AK + L +++V
Sbjct: 1570 EVGAEATGSDIKAKFMQRRFKLIEQSLV 1597
Score = 38 (18.4 bits), Expect = 9.9e-33, Sum P(4) = 9.9e-33
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 2106 SSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSI 2158
++D E E+ +P+ +++ P++ K A S + I GG +
Sbjct: 1456 ATDAESEQNAPVDEPMDTDEAKEPKEEPIETEKPRAARPSFKFNICDGGFTEL 1508
Score = 37 (18.1 bits), Expect = 5.4e-32, Sum P(6) = 5.4e-32
Identities = 25/120 (20%), Positives = 43/120 (35%)
Query: 1025 PPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANS 1084
PPPG P P + + D ++ + ++ E ++ + +A E +
Sbjct: 1713 PPPG---PFVTP--ILRQQMDG-IQPKFAALYSKFMSENGERMEEDEPVEAEEEEGV-KQ 1765
Query: 1085 SPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQE 1144
PDD++ + APP + S + N+ VSSE A E E
Sbjct: 1766 EPDDET----QDSAEAPPVLSAEVN-----SDDSNDVPSTSAAAAVSSETAADAEPASAE 1816
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 445 (161.7 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 97/226 (42%), Positives = 137/226 (60%)
Query: 10 SIGNSKGRSVHNSVMELRNICNHPYL----SQLHAEEVDTLIPK-HYLPPIVRLCGKLEM 64
SI + S+ N V+EL+ NHPYL + +++++ + L ++ GK+ +
Sbjct: 635 SISSGSQISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNSGKMVL 694
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
LD+LL +L+ HRVL FS M R+LD++ DYL+ + Y + RLDG R ID FN
Sbjct: 695 LDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNA 754
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
+SP F+FLLS RAGG+G+NL ADTVIIFD+DWNPQ DLQA ARAHRIGQK V+V R
Sbjct: 755 PNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRL 814
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
+ T+EE V A K+ + I+ G D ++++ + E L
Sbjct: 815 LSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEEL 860
Score = 52 (23.4 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 30/90 (33%), Positives = 40/90 (44%)
Query: 509 GSQSASACPST-PMQPKGR-GRRIQSGEQVPR-RRGKKIGLVL----PAASDDIPSPGP- 560
G +S+ A + QPK + R QSG+ P + +KI PA S+ P
Sbjct: 1206 GIKSSPAISTNGKTQPKKQTANRRQSGK--PNVKSAQKIESATRTPSPAISESRKKPSSK 1263
Query: 561 DPK--TNEQPQSESLNPSGGESTATDGNVS 588
D K T + QS S S +S DGNVS
Sbjct: 1264 DTKIETPSREQSRSQTASPVKSEKDDGNVS 1293
Score = 45 (20.9 bits), Expect = 3.4e-33, Sum P(4) = 3.4e-33
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 739 KPAEQSVRVVQSNQPINLPATHDSSSQPSGS-TPAQVPSMD 778
KP +S + ++S PA +S +PS T + PS +
Sbjct: 1233 KPNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPSRE 1273
Score = 43 (20.2 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 21/96 (21%), Positives = 38/96 (39%)
Query: 518 STPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDI---PSPGPDPKTNEQPQSESLN 574
S P + + +++ S + RR G+ + L + SP QP+ ++ N
Sbjct: 1169 SVPKDKENKEKKVPSAVHLVRR-GEYLLSALREHHQNFGIKSSPAISTNGKTQPKKQTAN 1227
Query: 575 --PSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQS 608
SG + + + S P P ++S S K S
Sbjct: 1228 RRQSGKPNVKSAQKIESATRTPSP-AISESRKKPSS 1262
Score = 38 (18.4 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 257 SEIDVFESVDKQRREEE 273
+E + FE D+ R EEE
Sbjct: 934 TEREKFEEEDRLREEEE 950
Score = 38 (18.4 bits), Expect = 4.3e-33, Sum P(4) = 4.3e-33
Identities = 16/92 (17%), Positives = 37/92 (40%)
Query: 1061 ASK-TEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQN 1119
+SK T+ P + + + S DD ++ + + P+ KH ++ R +
Sbjct: 1261 SSKDTKIETPSREQSRSQTASPVKSEKDDGNVSLNAEQKARCKELMYPVRKHMKRLRKDS 1320
Query: 1120 NPEVKGEETPVSSEAPASTEAFEQEKVTNTSS 1151
+ + E + +E + ++ V +T S
Sbjct: 1321 SGLGRAELVKLLTECLTTIGKHIEKTVNDTPS 1352
Score = 37 (18.1 bits), Expect = 3.4e-33, Sum P(4) = 3.4e-33
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 679 VSAGPESKSNLQSENNSG--GLRLS-KSVSMGKQDALSQELSN 718
VSA + SN QS N S L ++ K V + L Q L++
Sbjct: 1049 VSAAEKDLSNDQSNNKSSRKALLITFKGVKNINAETLVQRLND 1091
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 432 (157.1 bits), Expect = 4.9e-35, Sum P(2) = 4.9e-35
Identities = 108/243 (44%), Positives = 141/243 (58%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 435 MKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 489
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR--GAL 118
K+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R G L
Sbjct: 490 KMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENGFL 549
Query: 119 ----------IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 168
I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA
Sbjct: 550 QIYFRRRREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMD 609
Query: 169 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYL 227
RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++ + E L
Sbjct: 610 RAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEML 669
Query: 228 ESL 230
+ +
Sbjct: 670 QMI 672
Score = 45 (20.9 bits), Expect = 4.9e-35, Sum P(2) = 4.9e-35
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P +A EE+ + EP+ + + E KE
Sbjct: 814 IGYKVPRNPDIPNPAVAQREEQKKIDGAEPL--TPEETEEKE 853
Score = 37 (18.1 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPD 1729
++ ++ P+++ +++KIDG+ P+
Sbjct: 820 RNPDIPNPAVAQREEQKKIDGAEPLTPE 847
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 417 (151.9 bits), Expect = 5.9e-35, P = 5.9e-35
Identities = 90/202 (44%), Positives = 127/202 (62%)
Query: 4 VEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKL 62
VE N+ + + + N +M LR CNHPYL + +D + + + +V GK
Sbjct: 546 VEVNI-PVESEVNLKLQNIMMLLRKCCNHPYLIEY---PIDPVTQEFKIDEELVTNSGKF 601
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
+LDR+LP+LK H+VL FS MT +LD++ DY + + + RLDG S +R + F
Sbjct: 602 LILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSF 661
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
N D FIFL+S RAGG+G+NL AADTVII+D+DWNPQ DLQAQ R HRIGQ + V+V
Sbjct: 662 NT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 720
Query: 183 RFETVQTVEEQV--RASAEHKL 202
R T T+++++ RA+A+ KL
Sbjct: 721 RLVTANTIDQKIVERAAAKRKL 742
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 427 (155.4 bits), Expect = 6.2e-35, Sum P(2) = 6.2e-35
Identities = 107/243 (44%), Positives = 140/243 (57%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 411 MKDIDV-LNSSGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 465
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR----- 115
K+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R
Sbjct: 466 KMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFL 525
Query: 116 -----GA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 168
G I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA
Sbjct: 526 EVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMD 585
Query: 169 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYL 227
RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++ + E L
Sbjct: 586 RAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEML 645
Query: 228 ESL 230
+ +
Sbjct: 646 QMI 648
Score = 48 (22.0 bits), Expect = 6.2e-35, Sum P(2) = 6.2e-35
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P LA EE+ + EP+ + + E KE
Sbjct: 790 IGYKVPRNPDIPNPALAQREEQKKIDGAEPL--TPEETEEKE 829
Score = 40 (19.1 bits), Expect = 4.3e-34, Sum P(2) = 4.3e-34
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPD 1729
++ ++ P+L+ +++KIDG+ P+
Sbjct: 796 RNPDIPNPALAQREEQKKIDGAEPLTPE 823
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 427 (155.4 bits), Expect = 7.7e-35, Sum P(2) = 7.7e-35
Identities = 107/243 (44%), Positives = 140/243 (57%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 432 MKDIDV-LNSSGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 486
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR----- 115
K+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R
Sbjct: 487 KMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFL 546
Query: 116 -----GA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 168
G I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA
Sbjct: 547 EVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMD 606
Query: 169 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYL 227
RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++ + E L
Sbjct: 607 RAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEML 666
Query: 228 ESL 230
+ +
Sbjct: 667 QMI 669
Score = 48 (22.0 bits), Expect = 7.7e-35, Sum P(2) = 7.7e-35
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P LA EE+ + EP+ + + E KE
Sbjct: 811 IGYKVPRNPDIPNPALAQREEQKKIDGAEPL--TPEETEEKE 850
Score = 40 (19.1 bits), Expect = 5.3e-34, Sum P(2) = 5.3e-34
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPD 1729
++ ++ P+L+ +++KIDG+ P+
Sbjct: 817 RNPDIPNPALAQREEQKKIDGAEPLTPE 844
>UNIPROTKB|B5MDZ7 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:AL356378 GO:GO:0003676 GO:GO:0004386
InterPro:IPR002589 PROSITE:PS51154 HGNC:HGNC:1916 ChiTaRS:CHD1L
IPI:IPI00400835 ProteinModelPortal:B5MDZ7 SMR:B5MDZ7 STRING:B5MDZ7
PRIDE:B5MDZ7 Ensembl:ENST00000361293 HOGENOM:HOG000074191
HOVERGEN:HBG104833 ArrayExpress:B5MDZ7 Bgee:B5MDZ7 Uniprot:B5MDZ7
Length = 616
Score = 411 (149.7 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 95/211 (45%), Positives = 124/211 (58%)
Query: 6 ENLGSIGNSKGRSV--HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLE 63
++L + N + V N + +LR +HPYL E + H + GKL
Sbjct: 15 KDLDAFENETAKKVKLQNILSQLRKCVDHPYLFD-GVEPEPFEVGDH----LTEASGKLH 69
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LD+LL L + HRVL FS MT++LD+++DY+ ++ Y Y R+DG G +R I F
Sbjct: 70 LLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG 129
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
QQ P F+FLLS RAGGVG+NL AADTVI D+D+NPQ DLQA ARAHRIGQ + V V+R
Sbjct: 130 QQ--PIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIR 187
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFF 214
TVEE V A KL + N I G F
Sbjct: 188 LIGRDTVEEIVYRKAASKLQLTNMIIEGGHF 218
Score = 45 (20.9 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 346 KRAREVRSYEEQ---WTEEEFEKMCQAESSDSPKLKEEGLEKS 385
KR +E ++++ W ++ C P+ E G E S
Sbjct: 381 KRQKEEAEHKKKMAWWESNNYQSFCLPSEESEPEDLENGEESS 423
Score = 42 (19.8 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 2151 EGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESK--EPEAKAFEPMDV 2208
E S +P E P EE E ++P +S+ + P+A A + + V
Sbjct: 397 ESNNYQSFCLPSEESEPEDLENGEESSAELDYQDPDATSLKYVSGDVTHPQAGAEDALIV 456
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 428 (155.7 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 107/243 (44%), Positives = 140/243 (57%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 435 MKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 489
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR----- 115
K+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R
Sbjct: 490 KMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFL 549
Query: 116 -----GA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 168
G I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA
Sbjct: 550 EVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMD 609
Query: 169 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYL 227
RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++ + E L
Sbjct: 610 RAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEML 669
Query: 228 ESL 230
+ +
Sbjct: 670 QMI 672
Score = 45 (20.9 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P +A EE+ + EP+ + + E KE
Sbjct: 814 IGYKVPRNPDIPNPAVAQREEQKKIDGAEPL--TPEETEEKE 853
Score = 37 (18.1 bits), Expect = 8.6e-34, Sum P(2) = 8.6e-34
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPD 1729
++ ++ P+++ +++KIDG+ P+
Sbjct: 820 RNPDIPNPAVAQREEQKKIDGAEPLTPE 847
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 428 (155.7 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 107/243 (44%), Positives = 140/243 (57%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 435 MKDIDV-LNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 489
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR----- 115
K+ +LD+LL KLK RVL FS MTRLLD++EDY ++ Y Y RLDG T +R
Sbjct: 490 KMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFL 549
Query: 116 -----GA--LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 168
G I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA
Sbjct: 550 EVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMD 609
Query: 169 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYL 227
RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++ + E L
Sbjct: 610 RAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEML 669
Query: 228 ESL 230
+ +
Sbjct: 670 QMI 672
Score = 45 (20.9 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKE 2197
+ VP D P +A EE+ + EP+ + + E KE
Sbjct: 814 IGYKVPRNPDIPNPAVAQREEQKKIDGAEPL--TPEETEEKE 853
Score = 37 (18.1 bits), Expect = 9.2e-34, Sum P(2) = 9.2e-34
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPD 1729
++ ++ P+++ +++KIDG+ P+
Sbjct: 820 RNPDIPNPAVAQREEQKKIDGAEPLTPE 847
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 274 (101.5 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 61/145 (42%), Positives = 87/145 (60%)
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
QD+ IF+LS R+G +G+NLQ ADTVIIFD+D+NP D+QA R HRIGQK V V RF
Sbjct: 1401 QDA--MIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFRF 1458
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T+ VEE V A+HKL + ++ I AG F+ + EDR+ L+ +++ +K +
Sbjct: 1459 ITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKNDMTTHPT 1518
Query: 245 X-XXXXXXXXRSESEIDVFESVDKQ 268
R+E E++ F DK+
Sbjct: 1519 NPLLLNYYMKRNEEELEYFLDFDKR 1543
Score = 219 (82.2 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 53/122 (43%), Positives = 74/122 (60%)
Query: 2 KRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGK 61
K+V N GSI + N VM+LR I NHPYL L+ +D I++ GK
Sbjct: 1148 KQVNHN-GSITT---KIFQNIVMQLRKIVNHPYLF-LYDYNIDE--------NIIKCSGK 1194
Query: 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 121
E+LDR+LPKL H+VL FS MT+L++++ DYL F+ Y+Y RLDG+ +R +ID+
Sbjct: 1195 FEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQ 1254
Query: 122 FN 123
FN
Sbjct: 1255 FN 1256
Score = 52 (23.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 18/87 (20%), Positives = 35/87 (40%)
Query: 207 QSITAGFFD--NNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXXXXXRSESEI---DV 261
+++ +G F + E+ YL S++++ KKEE + E D
Sbjct: 1559 ENVDSGQFTYMSEDEKEENETYLSSIIKKEKKEEEGEDDEENQRDRNKEEDQDEDKDDDK 1618
Query: 262 FESVDKQRREEEMATWRKLIRGLGTDG 288
+ DK + EEE + ++ +G
Sbjct: 1619 DKDKDKDKEEEEEKKRKHILNNNNNNG 1645
Score = 47 (21.6 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 346 KRAREVRSY----EEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS 392
KR+R+V + EE+ TE++F K+ + S + E+ L ++ +V S
Sbjct: 1823 KRSRKVININLMQEEKLTEKQFLKLIDSSSPNLLSSVEKDLGRNKKDIVKS 1873
Score = 46 (21.3 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKES-VVEAGDQMGVSLGGATVMEKSSEDL 1876
E+K + +KD D +E+ K ++ + G+ G+++ E E +
Sbjct: 1612 EDKDDDKDKDKDKDKEEEEEKKRKHILNNNNNNGIQ-NGSSINEGVKEKI 1660
Score = 45 (20.9 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 684 ESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSN 718
+ + ++ + NN+ G++ S++ G ++ + E N
Sbjct: 1632 KKRKHILNNNNNNGIQNGSSINEGVKEKILDEYCN 1666
Score = 41 (19.5 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 559 GPDPKTNEQPQSESLNPSGGES 580
G P E P +E++N SG E+
Sbjct: 1266 GKQPNC-EMPGNENMNMSGNEN 1286
Score = 38 (18.4 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 570 SESLNPSGGESTATDGN--VSSIPTAPVPDSVSPS 602
+E++N SG E+ GN + I + D+ S S
Sbjct: 1340 NENMNMSGNENMNMSGNENIKMISSQNEKDTSSQS 1374
Score = 37 (18.1 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 1697 VVEREKSEELGLPSLSSA---TKEEKID----GSLDKDPDSNLVVLEDSK 1739
++++EK EE G + KEE D DKD D + E+ K
Sbjct: 1584 IIKKEKKEEEGEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKK 1633
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1332 NENMNMSGNENMNMSGN 1348
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1324 NENMNMSGNENMNMSGN 1340
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1316 NENMNMSGNENMNMSGN 1332
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1308 NENMNMSGNENMNMSGN 1324
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1300 NENMNMSGNENMNMSGN 1316
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 274 (101.5 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 61/145 (42%), Positives = 87/145 (60%)
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
QD+ IF+LS R+G +G+NLQ ADTVIIFD+D+NP D+QA R HRIGQK V V RF
Sbjct: 1401 QDA--MIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFRF 1458
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXXXXXX 244
T+ VEE V A+HKL + ++ I AG F+ + EDR+ L+ +++ +K +
Sbjct: 1459 ITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKNDMTTHPT 1518
Query: 245 X-XXXXXXXXRSESEIDVFESVDKQ 268
R+E E++ F DK+
Sbjct: 1519 NPLLLNYYMKRNEEELEYFLDFDKR 1543
Score = 219 (82.2 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 53/122 (43%), Positives = 74/122 (60%)
Query: 2 KRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGK 61
K+V N GSI + N VM+LR I NHPYL L+ +D I++ GK
Sbjct: 1148 KQVNHN-GSITT---KIFQNIVMQLRKIVNHPYLF-LYDYNIDE--------NIIKCSGK 1194
Query: 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 121
E+LDR+LPKL H+VL FS MT+L++++ DYL F+ Y+Y RLDG+ +R +ID+
Sbjct: 1195 FEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQ 1254
Query: 122 FN 123
FN
Sbjct: 1255 FN 1256
Score = 52 (23.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 18/87 (20%), Positives = 35/87 (40%)
Query: 207 QSITAGFFD--NNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXXXXXRSESEI---DV 261
+++ +G F + E+ YL S++++ KKEE + E D
Sbjct: 1559 ENVDSGQFTYMSEDEKEENETYLSSIIKKEKKEEEGEDDEENQRDRNKEEDQDEDKDDDK 1618
Query: 262 FESVDKQRREEEMATWRKLIRGLGTDG 288
+ DK + EEE + ++ +G
Sbjct: 1619 DKDKDKDKEEEEEKKRKHILNNNNNNG 1645
Score = 47 (21.6 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 346 KRAREVRSY----EEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS 392
KR+R+V + EE+ TE++F K+ + S + E+ L ++ +V S
Sbjct: 1823 KRSRKVININLMQEEKLTEKQFLKLIDSSSPNLLSSVEKDLGRNKKDIVKS 1873
Score = 46 (21.3 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKES-VVEAGDQMGVSLGGATVMEKSSEDL 1876
E+K + +KD D +E+ K ++ + G+ G+++ E E +
Sbjct: 1612 EDKDDDKDKDKDKDKEEEEEKKRKHILNNNNNNGIQ-NGSSINEGVKEKI 1660
Score = 45 (20.9 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 684 ESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSN 718
+ + ++ + NN+ G++ S++ G ++ + E N
Sbjct: 1632 KKRKHILNNNNNNGIQNGSSINEGVKEKILDEYCN 1666
Score = 41 (19.5 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 559 GPDPKTNEQPQSESLNPSGGES 580
G P E P +E++N SG E+
Sbjct: 1266 GKQPNC-EMPGNENMNMSGNEN 1286
Score = 38 (18.4 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 570 SESLNPSGGESTATDGN--VSSIPTAPVPDSVSPS 602
+E++N SG E+ GN + I + D+ S S
Sbjct: 1340 NENMNMSGNENMNMSGNENIKMISSQNEKDTSSQS 1374
Score = 37 (18.1 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 1697 VVEREKSEELGLPSLSSA---TKEEKID----GSLDKDPDSNLVVLEDSK 1739
++++EK EE G + KEE D DKD D + E+ K
Sbjct: 1584 IIKKEKKEEEGEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKK 1633
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1332 NENMNMSGNENMNMSGN 1348
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1324 NENMNMSGNENMNMSGN 1340
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1316 NENMNMSGNENMNMSGN 1332
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1308 NENMNMSGNENMNMSGN 1324
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 570 SESLNPSGGESTATDGN 586
+E++N SG E+ GN
Sbjct: 1300 NENMNMSGNENMNMSGN 1316
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 431 (156.8 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 91/194 (46%), Positives = 127/194 (65%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 738 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 794
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 795 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 854
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V + R T
Sbjct: 855 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 914
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 915 SVEEDILERAKKKM 928
Score = 63 (27.2 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 68/301 (22%), Positives = 118/301 (39%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGV-VD-ELVDEAGDHMGVSHSPVHVV 1698
G L+D +S E G R+ + V G + R +SGV V+ +LV D + P+H
Sbjct: 1173 GCVKALKDSSSGTERAGGRLGK--VKGPTFR-ISGVQVNAKLVIAHEDEL----IPLHKS 1225
Query: 1699 EREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQSGV 1753
EE ++ TK D K+ DSNL++ E GS I D +
Sbjct: 1226 IPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHK 1285
Query: 1754 VVPENLSDFCQPSS--SLAPWEAKI-DGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIM 1810
++P++ Q + A + K+ K GSK A + +
Sbjct: 1286 ILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKREAQRLCGAGGSKRRKTRAKKSKAMKSI 1345
Query: 1811 PEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVME 1870
K+ E + +S E+ E +K DS +++ K+SVV + G +
Sbjct: 1346 --KVKEEIKSDSSPLPSEKSDEDDDKLNDSKPESKDRSKKSVVSDAPVHITASGEPVPIA 1403
Query: 1871 KSSEDLATPPLSLANE-----EEMIEGFDNDPTGISMA--VMDSKECAAEAADQM--CVS 1921
+ SE+L S+ E + ++ D G+S + +++C + D + C+
Sbjct: 1404 EESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLK 1463
Query: 1922 E 1922
E
Sbjct: 1464 E 1464
Score = 39 (18.8 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 13/64 (20%), Positives = 29/64 (45%)
Query: 1570 EIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENM 1629
E E GP LS +++++ A+ + ++L P ++ I+PE + +
Sbjct: 998 ETHENEPGP----LSVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEEQRRRL 1053
Query: 1630 GEKD 1633
E++
Sbjct: 1054 EEEE 1057
Score = 37 (18.1 bits), Expect = 8.8e-32, Sum P(3) = 8.8e-32
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1830 KTEGSEKDPDSSFAAQEDPKE 1850
K S K P SSF+ +D +E
Sbjct: 1568 KKSDSRKRPYSSFSNGKDHRE 1588
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 416 (151.5 bits), Expect = 1.8e-34, P = 1.8e-34
Identities = 83/202 (41%), Positives = 123/202 (60%)
Query: 4 VEENLGSIGNSKGRSVHNSVMELRNICNHPYLS---QLHAEEVDTLIPKHYLPPIVRLCG 60
+ N + + + N +M+LR +C+HPYL + E+ + K ++ G
Sbjct: 470 ITNNYQVLTKKRDAKISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTK-----LLEASG 524
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
KL++LD+++ KLK HRVL ++ L ++EDY TFK + Y R+DG SG +R ID
Sbjct: 525 KLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRID 584
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+FN ++S F FLLS RAGG+G+NL ADTVII+D+DWNP DLQA AR HR+GQ V+
Sbjct: 585 RFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVM 644
Query: 181 VLRFETVQTVEEQVRASAEHKL 202
+ R TVEE++ ++K+
Sbjct: 645 IYRLIHKGTVEERMMEITKNKM 666
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 411 (149.7 bits), Expect = 2.5e-34, P = 2.5e-34
Identities = 90/202 (44%), Positives = 127/202 (62%)
Query: 4 VEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP-IVRLCGKL 62
VE N+ I + + N +M LR CNHPY+ + +D + + + +V GK
Sbjct: 529 VEGNI-PIESEVNLKLRNIMMLLRKCCNHPYMIEY---PIDPVTQEFKIDEELVTNSGKF 584
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
+LDR+LP+LK H+VL FS MT +LD++ DY + + + RLDG S +R I F
Sbjct: 585 LILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSF 644
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
N D F+FL+S RAGG+G+NL AADTVII+D+DWNPQ DLQAQ R HRIGQ + V+V
Sbjct: 645 NT-DPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 703
Query: 183 RFETVQTVEEQV--RASAEHKL 202
R T T+++++ RA+A+ KL
Sbjct: 704 RLVTANTIDQKIVERAAAKRKL 725
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 408 (148.7 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
Identities = 98/212 (46%), Positives = 127/212 (59%)
Query: 6 ENLGSIGNSKGRSV--HNSVMELRNICNHPYL-SQLHAEEVDTLIPKHYLPPIVRLCGKL 62
++L + GR V N +++LR HPYL + + E + I H IV GKL
Sbjct: 296 KDLDAFEGGTGRKVMLQNVLIQLRKCVAHPYLFNGVEPEPFE--IGDH----IVEASGKL 349
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122
+LD+LL L HRVL FS MT+LLD+++DY+ ++ Y Y RLDG G +R I F
Sbjct: 350 CLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNF 409
Query: 123 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182
QQ P F+FLLS RAGGVG+NL AADTVI D+D+NPQ DLQA ARAHRIGQ + V ++
Sbjct: 410 GQQ--PIFVFLLSTRAGGVGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKII 467
Query: 183 RFETVQTVEEQVRASAEHKLGVANQSITAGFF 214
R TVEE + A KL + N + G F
Sbjct: 468 RLIGRDTVEEIIYRRAASKLRLTNAIVEGGQF 499
Score = 58 (25.5 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 2114 IEGFSKPVGSEKESIASAVPLDE--SKGPDAEVSSQ-TAIEGGGVVSIPVPEEADGP--- 2167
+EG +G K AS + L E G D +SS+ + ++ + +I + E G
Sbjct: 494 VEGGQFALGVHKPQEASDLQLSEILKFGLDKLLSSEGSTVQDVELENI-LGETKGGKWVM 552
Query: 2168 ASFLAAEEEKNECSDKEPVGSSVSQIESKEP---EAKAFEPMDVVDGAVALENTSEG 2221
+ L EEE+NE + + + SKEP + KAF+ + + A+ E + EG
Sbjct: 553 DAVLPCEEERNEDDTENHMYVYEGKDYSKEPSREDKKAFDQLLDLQKALIEETSKEG 609
Score = 42 (19.8 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 757 PATHDSSSQPSGSTPAQVP 775
P S+SQPS S A P
Sbjct: 877 PRNRGSASQPSSSVAASKP 895
Score = 37 (18.1 bits), Expect = 5.7e-32, Sum P(2) = 5.7e-32
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1756 PENLSDFCQPSSSLA 1770
P N QPSSS+A
Sbjct: 877 PRNRGSASQPSSSVA 891
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 439 (159.6 bits), Expect = 4.2e-34, Sum P(4) = 4.2e-34
Identities = 91/222 (40%), Positives = 136/222 (61%)
Query: 18 SVHNSVMELRNICNHPYLSQLHAEEVDTLI--PKHYLPPIVRLCGKLEMLDRLLPKLKAT 75
S++N +MELR +C HPY+ E V+ +I ++ CGKL++LD+++ KLK
Sbjct: 555 SLNNIMMELRKVCCHPYM----LEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQ 610
Query: 76 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135
HRVL ++ +LD++EDY T K+++Y R+DG G +R ID+FN ++S F FLLS
Sbjct: 611 GHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLS 670
Query: 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 195
RAGG+G+NL ADTVII+D+DWNP DLQA ARAHR+GQ V++ R T+EE++
Sbjct: 671 TRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMM 730
Query: 196 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKE 237
+ K+ V + N + E+ L+ ++R KE
Sbjct: 731 QLTKKKM-VLEHLVVGKLKTQNINQEE----LDDIIRYGSKE 767
Score = 52 (23.4 bits), Expect = 5.4e-33, Sum P(5) = 5.4e-33
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 736 PDQKPAEQSVRVVQS-NQPIN--LPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSE 792
P +S R ++S N IN L T D S T P DL NV + K+ E
Sbjct: 1286 PPSTKVNESFRALKSINGNINTILSITSDQSKSHEDDTK---P--DLNNV--EMKDTAEE 1338
Query: 793 NSSSKGGVIPI 803
+GGV+ +
Sbjct: 1339 TKPLRGGVVDL 1349
Score = 50 (22.7 bits), Expect = 4.2e-34, Sum P(4) = 4.2e-34
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 1521 NGNVEVLCGGTGDKKADCKMEPDCLVASDSVNMELVPRDFGVGRRDGDIEIFNMEGGPSN 1580
NGN+ + T D+ E D ++V M+ + R G +++ +EG +
Sbjct: 1302 NGNINTILSITSDQSKS--HEDDTKPDLNNVEMKDTAEETKP-LRGGVVDLNVVEGEENI 1358
Query: 1581 ALLSSSKDIIAESAKAD 1597
A S S D+ E AK +
Sbjct: 1359 AEASGSVDVKMEEAKEE 1375
Score = 45 (20.9 bits), Expect = 4.2e-34, Sum P(4) = 4.2e-34
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 1027 PGFNSPNENPGELTGTKNDASVRG 1050
PG + N+NPG + N+AS G
Sbjct: 1134 PGAQT-NQNPGSVITGNNNASADG 1156
Score = 43 (20.2 bits), Expect = 4.2e-34, Sum P(4) = 4.2e-34
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 565 NEQPQSESLNPSGGESTATDGNVSSI 590
N QP S +N S + +GN+++I
Sbjct: 1283 NNQPPSTKVNESFRALKSINGNINTI 1308
Score = 42 (19.8 bits), Expect = 4.2e-34, Sum P(4) = 4.2e-34
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 509 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGK 542
G +S A ST + G+G +Q+G + RR+G+
Sbjct: 902 GDESYEA-ESTDGEAAGQG--VQTGRRPYRRKGR 932
Score = 40 (19.1 bits), Expect = 4.2e-34, Sum P(4) = 4.2e-34
Identities = 16/78 (20%), Positives = 32/78 (41%)
Query: 758 ATHDSSSQPSGSTPAQVPSMD--LGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERV 815
A+ D + SG ++D L + +EV S + + G + ++N + ++
Sbjct: 770 ASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEV-SVDDEEENGFLKAFKVANFEYIDEN 828
Query: 816 NIQSFEEKACTNASKSKA 833
+ E + SKS A
Sbjct: 829 EAAALEAQRVAAESKSSA 846
Score = 40 (19.1 bits), Expect = 1.4e-32, Sum P(5) = 1.4e-32
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVV---VPEN 1758
KS + ++ S T ++ D PD N V ++D+ ++ + GVV V E
Sbjct: 1299 KSINGNINTILSITSDQSKSHEDDTKPDLNNVEMKDT----AEETKPLRGGVVDLNVVEG 1354
Query: 1759 LSDFCQPSSSLAPWEAKIDGSSEKD 1783
+ + S S+ + K++ + E++
Sbjct: 1355 EENIAEASGSV---DVKMEEAKEEE 1376
Score = 40 (19.1 bits), Expect = 1.4e-32, Sum P(5) = 1.4e-32
Identities = 29/146 (19%), Positives = 62/146 (42%)
Query: 1776 IDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLATPEEKTEGSE 1835
+DG + DP++S+ ++ G+ +A +++I+ ++ + LD A E +
Sbjct: 1231 LDGLPKTDPITSEEIM-GAAVDNNQA--RVEIAQHYNQMCKLLDENA-----RESVQAYV 1282
Query: 1836 KDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDN 1895
+ S E + ++ + L + KS ED P L+ ++ E
Sbjct: 1283 NNQPPSTKVNESFR-ALKSINGNINTILSITSDQSKSHEDDTKPDLNNVEMKDTAEETKP 1341
Query: 1896 DPTGI-SMAVMDSKECAAEAADQMCV 1920
G+ + V++ +E AEA+ + V
Sbjct: 1342 LRGGVVDLNVVEGEENIAEASGSVDV 1367
Score = 39 (18.8 bits), Expect = 5.4e-33, Sum P(5) = 5.4e-33
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 679 VSAGPESKSNLQSENNSGG 697
+S ++ LQ +N SGG
Sbjct: 1113 ISLSAAEQAGLQGQNGSGG 1131
Score = 37 (18.1 bits), Expect = 5.4e-33, Sum P(5) = 5.4e-33
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1675 GVVDELVDEAGDHMGVSHSPVHV-VEREKSEE 1705
GVVD V E +++ + V V +E K EE
Sbjct: 1345 GVVDLNVVEGEENIAEASGSVDVKMEEAKEEE 1376
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 420 (152.9 bits), Expect = 5.3e-34, Sum P(2) = 5.3e-34
Identities = 98/211 (46%), Positives = 125/211 (59%)
Query: 6 ENLGSIGNSKGRSV--HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLE 63
++L + N + V N + +LR +HPYL E I H ++ GKL
Sbjct: 298 KDLDAFENETAKKVKLQNVLSQLRKCVDHPYLFD-GVEPEPFEIGDH----LIEASGKLH 352
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LD+LL L + HRVL FS MT++LD+++DYL ++ Y Y R+DG G +R I F
Sbjct: 353 LLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFG 412
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
QQ P F FLLS RAGGVG+NL AADTVI FD+D+NPQ DLQA ARAHRIGQ + V V+R
Sbjct: 413 QQ--PIFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIR 470
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFF 214
TVEE V A KL + N I G F
Sbjct: 471 LIGRDTVEEIVYRKAASKLQLTNTIIEGGHF 501
Score = 44 (20.5 bits), Expect = 5.3e-34, Sum P(2) = 5.3e-34
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 1758 NLSDFCQPSSSLAPWEAKIDGSSE---KDPVSSQSVLEGSKETVAEAG 1802
N FC PS P + + + S++ +DP S+ T +AG
Sbjct: 683 NYQSFCLPSEESEPEDGEDESSAQLEYEDPDSTSIRYVSGDVTHPQAG 730
Score = 42 (19.8 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTA---TDGNVSSIPTAPVPDSV 599
+PS +P+ E S L +ST+ G+V+ P A D+V
Sbjct: 689 LPSEESEPEDGEDESSAQLEYEDPDSTSIRYVSGDVTH-PQAGAEDAV 735
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 407 (148.3 bits), Expect = 5.4e-34, P = 5.4e-34
Identities = 95/227 (41%), Positives = 133/227 (58%)
Query: 15 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP---IVRLCGKLEMLDRLLPK 71
KG+ ++N V++LR CNHP L Q ++D + PP IV CGK +L+RLL +
Sbjct: 483 KGK-LNNLVIQLRKNCNHPDLLQ---GQIDG---SYLYPPVEEIVGQCGKFRLLERLLVR 535
Query: 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131
L A +H+VL FS T+LLD+M+ Y + K + R+DG +R I F+ + S I
Sbjct: 536 LFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSI 595
Query: 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191
FLLS RAGG+G+NL AADT I++D+DWNPQ+DLQA R HRIGQ + V V R T Q++E
Sbjct: 596 FLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIE 655
Query: 192 EQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 238
+V A KL + + I G F + E +L K++E
Sbjct: 656 TRVLKRAYSKLKLEHVVIGQGQFHQERAKSSTPLEEEDILALLKEDE 702
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 442 (160.7 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 97/206 (47%), Positives = 125/206 (60%)
Query: 18 SVHNSVMELRNICNHPYLSQLHAEEV-----D-TLIPKHYLPPIVRLCGKLEMLDRLLPK 71
S+ N + EL+ NHPYL E V D + ++ L ++ GK+ +LD+LL +
Sbjct: 647 SLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTR 706
Query: 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131
LK HRVL FS M R+LD++ DYL+ K + RLDG R ID FN DS F+
Sbjct: 707 LKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 766
Query: 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191
FLLS RAGG+G+NL ADTV+IFD+DWNPQ DLQA ARAHRIGQK V+V R + TVE
Sbjct: 767 FLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 826
Query: 192 EQVRASAEHKLGVANQSITAGFFDNN 217
E+V A K+ + I+ G D N
Sbjct: 827 EEVLERARKKMILEYAIISLGVTDGN 852
Score = 45 (20.9 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 349 REVRSYEEQWTEEEFEKM 366
+ V+++ WT+EE EK+
Sbjct: 1166 KPVQNWSSNWTKEEDEKL 1183
Score = 43 (20.2 bits), Expect = 9.6e-34, Sum P(4) = 9.6e-34
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 901 PTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQ---ETA 957
P + R G +Q S PS GSA + + + + R + + SL+ + ++
Sbjct: 1343 PLKSKVSRDNGTRQSSNPS--SGSA-HEKEYDSMDEEDCRHTMSAIRTSLKRLRRGGKSL 1399
Query: 958 DVNDVARVMK 967
D + A+++K
Sbjct: 1400 DRKEWAKILK 1409
Score = 42 (19.8 bits), Expect = 9.6e-34, Sum P(4) = 9.6e-34
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 837 ALDSITEPYTGSTNTEGISNTIHHVPGAV 865
A S T P T S +GI+ + VPGA+
Sbjct: 1224 ASSSDTTP-TPSKKGKGITGSSKKVPGAI 1251
Score = 40 (19.1 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1765 PSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMD 1806
PSS A E + D E+D + S + S + + G +D
Sbjct: 1360 PSSGSAH-EKEYDSMDEEDCRHTMSAIRTSLKRLRRGGKSLD 1400
Score = 39 (18.8 bits), Expect = 2.5e-33, Sum P(4) = 2.5e-33
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 2188 SSVSQIESKEP-EAKAFEPMDVVD-GAVAL-ENTSEGMGGPSPPL 2229
S +I S EP + M + G AL NT P+PPL
Sbjct: 1300 SMTPEITSSEPANGPPSKRMKALPKGPAALINNTRLSPNSPTPPL 1344
Score = 38 (18.4 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 1201 TPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDDHSLVK 1240
TP GE+ + G E K TD + +D + + L K
Sbjct: 904 TPDLGESHLGGEEFLKQFEVTDYKADIDWDDIIPEEELKK 943
Score = 37 (18.1 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 449 PAPSGTVKVEKDAMTGQSTS-ASASLPXXXXXXXXXXXAQHVMVGIAPS 496
P P KV +D T QS++ +S S +H M I S
Sbjct: 1340 PTPPLKSKVSRDNGTRQSSNPSSGSAHEKEYDSMDEEDCRHTMSAIRTS 1388
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 410 (149.4 bits), Expect = 7.8e-34, P = 7.8e-34
Identities = 84/173 (48%), Positives = 114/173 (65%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 943 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLML 1002
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 1003 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1062
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 177
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ +
Sbjct: 1063 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 423 (154.0 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 101/223 (45%), Positives = 140/223 (62%)
Query: 4 VEENLGSI--GNSKGRSVHNSVMELRNICNHPYLSQLHAEEV---DTLI--P---KHYLP 53
+E N + G S S+ N +MELR CNHP+L AEE D + P + L
Sbjct: 1455 LERNFSHLCKGTS-APSLMNVMMELRKCCNHPFLIN-GAEEAIMNDFRLAHPDWDEETLA 1512
Query: 54 --PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111
+++ GK+ ++++LLPKL+ H+VL FS M ++LD++E++L Y + R+DG+
Sbjct: 1513 HKALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVR 1572
Query: 112 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171
G R A ID+F++++S F+FLL RAGG+G+NL AADTVIIFD+DWNPQ DLQAQAR H
Sbjct: 1573 GDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCH 1632
Query: 172 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN---QSITA 211
RIGQK+ V V R T T E ++ A KLG+ QS TA
Sbjct: 1633 RIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTA 1675
Score = 66 (28.3 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 75/325 (23%), Positives = 116/325 (35%)
Query: 494 APSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGK---KIGLVLPA 550
A SS+PT A P+A A+ PSTP K S + P KIG L
Sbjct: 2620 AASSRPTPAATPLAV----ATPKPSTPKVEKSSAT--PSAPETPSASATCNIKIGESLQF 2673
Query: 551 ASDDIPSPGPDPKTNEQPQSESLNPSGGESTA-TDGNVSSIPTAPVPDSVSPSAVKGQSG 609
DD+ S + KT E + S P E +A D N A S S
Sbjct: 2674 --DDMISVF-NRKTGEL-LAASKWPKATELSAWLDANPDYNVHANSALFAHLSLGGAHSD 2729
Query: 610 TI-DPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKR 668
I D + AV A S +T + Q Q+++T S TP R
Sbjct: 2730 RIGDATPAVTA--SVPSTPTPSTSASAANAQLMALALAQQVQQAQQTPS---TPTSSKSR 2784
Query: 669 QALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQE-LSNKIQVQPCGV 727
A + + A S+ + ++ L++ + +Q A Q L +
Sbjct: 2785 SATAAAQAAAAQAAA-SQQDAITKQQLEMLQMQMMLQQYQQAAALQSMLYGGYGMPTTST 2843
Query: 728 ATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGST--PAQVPSMDLGNVASD 785
A S+ A + ++ P S+S PS S AQ PS + + +S
Sbjct: 2844 AASSSSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVPSTSSQ 2903
Query: 786 TKEVLSENSSSKGGVIPILALSNMK 810
+ +++S + P+L + M+
Sbjct: 2904 AAAAAASSANSGEDINPLLLTALMQ 2928
Score = 63 (27.2 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 30/121 (24%), Positives = 50/121 (41%)
Query: 657 SGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQEL 716
SGG ++QAL ++ + AG + + S G S+S + Q A +Q
Sbjct: 2359 SGGQN-MTAAQQQALNQM-LTMLIAGAVQQQQQAQPSTSKGASSSQSSAQANQAAQAQAA 2416
Query: 717 SNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQ-----SNQPINLPATHDSSSQPSGSTP 771
+ + + A SA + D + Q +V++ S P L A +SS STP
Sbjct: 2417 A--VALAQVAAAASASTSSADAQAVAQQQQVLEALLAMSMNPAALAALTGTSSSTGTSTP 2474
Query: 772 A 772
+
Sbjct: 2475 S 2475
Score = 59 (25.8 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 35/146 (23%), Positives = 54/146 (36%)
Query: 695 SGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPD-QKPAEQSVRVVQSNQP 753
SGG ++++ +Q AL+Q L+ I G A P K A S Q+NQ
Sbjct: 2359 SGG----QNMTAAQQQALNQMLTMLI----AGAVQQQQQAQPSTSKGASSSQSSAQANQA 2410
Query: 754 INLPATHDSSSQPSGSTPAQVPSMDLGNVASDTK--EVLSENSSSKGGVIPILALSNMKA 811
A + +Q + + A S D VA + E L S + + + S+
Sbjct: 2411 AQAQAAAVALAQVAAAASASTSSADAQAVAQQQQVLEALLAMSMNPAALAALTGTSSSTG 2470
Query: 812 VERVNIQSFEEKACTNASKSKATLPA 837
+ + A S S AT A
Sbjct: 2471 TSTPSAPKKSKPAPQKESTSSATAAA 2496
Score = 54 (24.1 bits), Expect = 6.9e-33, Sum P(3) = 6.9e-33
Identities = 37/155 (23%), Positives = 55/155 (35%)
Query: 511 QSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQ- 569
Q A PST Q+ Q + + + L AA+ + D + Q Q
Sbjct: 2386 QQQQAQPSTSKGASSSQSSAQAN-QAAQAQAAAVALAQVAAAASASTSSADAQAVAQQQQ 2444
Query: 570 ------SESLNPSG-GESTATDGNV-SSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALN 621
+ S+NP+ T T + +S P+AP +P S T +A AA +
Sbjct: 2445 VLEALLAMSMNPAALAALTGTSSSTGTSTPSAPKKSKPAPQKESTSSAT----AAAAAAS 2500
Query: 622 SELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQ 656
++ LA A Q QS KTQ
Sbjct: 2501 AQAAA-LAAAQQQQQQAQQAQQAAQQA--QSAKTQ 2532
Score = 50 (22.7 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 30/110 (27%), Positives = 44/110 (40%)
Query: 1102 PGFDIPIEKHNEQSRNQNN----PEVKGEE---TPVSSEAPASTEAFEQEKVTNTSSFVN 1154
P + I I NE S N P K TP ++ +T KV +S+ +
Sbjct: 2593 PEWSIDIPLFNEMSGNGTGSGAAPSSKAASSRPTPAATPLAVATPKPSTPKVEKSSATPS 2652
Query: 1155 LADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKW-KNTPL 1203
+ S TC++ E+ FD I ++G E+ A KW K T L
Sbjct: 2653 APETPSASATCNIKIG-ESLQ-FDDMISVFNRKTG-ELLAASKWPKATEL 2699
Score = 47 (21.6 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 493 IAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVP 537
I ++ TA VP P ++++ + + +++Q +Q P
Sbjct: 2731 IGDATPAVTASVPSTPTPSTSASAANAQLMALALAQQVQQAQQTP 2775
Score = 46 (21.3 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 1255 GNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGS 1304
G P + + S P TPL + + + + ++ + ETP S +
Sbjct: 2613 GAAPSSKAASSRPTPAATPLAVATPKPSTPKVEKSSATPSAPETPSASAT 2662
Score = 42 (19.8 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 468 SASASLPXXXXXXXXXXXAQHVMVGI-APSSQPTTAFVPVAPGSQSASACPSTPMQPK 524
+A+AS Q V+ + A S P S + ++ PS P + K
Sbjct: 2424 AAAASASTSSADAQAVAQQQQVLEALLAMSMNPAALAALTGTSSSTGTSTPSAPKKSK 2481
Score = 40 (19.1 bits), Expect = 8.8e-33, Sum P(3) = 8.8e-33
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 1301 LSGSPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEV 1360
L+G+ ++GT + K+ ++ +A+ + Q +A+ + + + +A+
Sbjct: 2462 LTGTSSSTGTSTPSAPKKSKPAPQKESTSSATAAAAAASAQAAALAAAQQQQQQAQQAQQ 2521
Query: 1361 A 1361
A
Sbjct: 2522 A 2522
Score = 40 (19.1 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 562 PKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGT-IDPSSAVAAL 620
P T++Q + + PS + +S+P+ + + +A SG I+P A +
Sbjct: 2869 PTTSKQASASTSTPSTSAVASAQTPSTSVPSTS-SQAAAAAASSANSGEDINPLLLTALM 2927
Query: 621 NS 622
+
Sbjct: 2928 QN 2929
Score = 38 (18.4 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 13/49 (26%), Positives = 17/49 (34%)
Query: 900 TPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDS-FGSKT 947
TP + S P P SA + K+ + Q S F KT
Sbjct: 2636 TPKPSTPKVEKSSATPSAPETPSASATCNIKIGESLQFDDMISVFNRKT 2684
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 423 (154.0 bits), Expect = 8.1e-34, Sum P(2) = 8.1e-34
Identities = 105/243 (43%), Positives = 139/243 (57%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ L S G + N +M+LR CNHPYL AE + IV G
Sbjct: 412 MKDIDV-LNSSGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDEH---IVSNSG 466
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL-- 118
K+ LD+LL ++K RVL FS MTRLLD++EDY ++ Y Y RLDG T +R L
Sbjct: 467 KMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFL 526
Query: 119 ----------IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 168
I+ FN +S FIF+LS RAGG+G+NL +AD VI++D+DWNPQVDLQA
Sbjct: 527 HKHNLFSTEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMD 586
Query: 169 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDNNTSAEDRREYL 227
RAHRIGQK+ V V R T TVEE++ AE KL + + I G D ++ + E L
Sbjct: 587 RAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEML 646
Query: 228 ESL 230
+ +
Sbjct: 647 QMI 649
Score = 42 (19.8 bits), Expect = 8.1e-34, Sum P(2) = 8.1e-34
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPDSN 1731
++ EL P+++ +++KIDG+ P +
Sbjct: 797 RNPELPNPAIAQREEQKKIDGAEPLTPQES 826
Score = 42 (19.8 bits), Expect = 8.1e-34, Sum P(2) = 8.1e-34
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 2156 VSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESK 2196
+ VP + P +A EE+ + EP+ S+ + K
Sbjct: 791 IGYKVPRNPELPNPAIAQREEQKKIDGAEPLTPQESEEKDK 831
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 440 (159.9 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 95/226 (42%), Positives = 139/226 (61%)
Query: 18 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLKATD 76
S+ N +MEL+ CNHPYL E L Y +++ GK +L ++L KLK
Sbjct: 897 SLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGG 956
Query: 77 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136
HRVL FS MT +LD++ED+ + Y+Y R+DG +G R ID++N + F+FLLS
Sbjct: 957 HRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLST 1016
Query: 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 196
RAGG+G+NL ADTVII+D+DWNP D+QA +RAHR+GQK V++ RF T +VEE++ +
Sbjct: 1017 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITS 1076
Query: 197 SAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR----ECKKEE 238
A+ K+ + + + AG + + + E L+ +LR E KEE
Sbjct: 1077 VAKKKMLLTHLVVRAGLGAKDGKSMSKTE-LDDVLRWGTEELFKEE 1121
Score = 46 (21.3 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 928 DAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKE 968
D + +H N+ SF T + + + D D V+KE
Sbjct: 1164 DGEKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKE 1204
Score = 41 (19.5 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 2154 GVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVS 2191
G +S V E A +S A ++E + SDK+ +S +
Sbjct: 1743 GSISAAVAE-ASRASSIAATKDEPMDTSDKDIPSTSAA 1779
Score = 39 (18.8 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1825 ATPEEKTEGSEKD-PDSSFAA 1844
AT +E + S+KD P +S AA
Sbjct: 1760 ATKDEPMDTSDKDIPSTSAAA 1780
Score = 38 (18.4 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 10/58 (17%), Positives = 23/58 (39%)
Query: 1178 DIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDD 1235
D +++ E+ G + + K W N L + + D D E +++ ++
Sbjct: 1151 DFLLDRNKEEEGQDGEKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKEGTEE 1208
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 440 (159.9 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 95/226 (42%), Positives = 139/226 (61%)
Query: 18 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLKATD 76
S+ N +MEL+ CNHPYL E L Y +++ GK +L ++L KLK
Sbjct: 897 SLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGG 956
Query: 77 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136
HRVL FS MT +LD++ED+ + Y+Y R+DG +G R ID++N + F+FLLS
Sbjct: 957 HRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLST 1016
Query: 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 196
RAGG+G+NL ADTVII+D+DWNP D+QA +RAHR+GQK V++ RF T +VEE++ +
Sbjct: 1017 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITS 1076
Query: 197 SAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR----ECKKEE 238
A+ K+ + + + AG + + + E L+ +LR E KEE
Sbjct: 1077 VAKKKMLLTHLVVRAGLGAKDGKSMSKTE-LDDVLRWGTEELFKEE 1121
Score = 46 (21.3 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 928 DAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKE 968
D + +H N+ SF T + + + D D V+KE
Sbjct: 1164 DGEKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKE 1204
Score = 41 (19.5 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 2154 GVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVS 2191
G +S V E A +S A ++E + SDK+ +S +
Sbjct: 1743 GSISAAVAE-ASRASSIAATKDEPMDTSDKDIPSTSAA 1779
Score = 39 (18.8 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1825 ATPEEKTEGSEKD-PDSSFAA 1844
AT +E + S+KD P +S AA
Sbjct: 1760 ATKDEPMDTSDKDIPSTSAAA 1780
Score = 38 (18.4 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 10/58 (17%), Positives = 23/58 (39%)
Query: 1178 DIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDD 1235
D +++ E+ G + + K W N L + + D D E +++ ++
Sbjct: 1151 DFLLDRNKEEEGQDGEKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKEGTEE 1208
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 414 (150.8 bits), Expect = 9.4e-34, Sum P(2) = 9.4e-34
Identities = 95/211 (45%), Positives = 125/211 (59%)
Query: 6 ENLGSIGNSKGRSV--HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLE 63
++L + N + V N + +LR +HPYL E + +H ++ GKL
Sbjct: 290 KDLDAFENETAKKVKLQNVLTQLRKCVDHPYLFD-GVEPEPFEVGEH----LIEASGKLH 344
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDRLL L + HRVL FS MT +LD+++DY+ ++ Y Y R+DG G +R I F
Sbjct: 345 LLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG 404
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
+Q P F+FLLS RAGGVG+NL AADTVI D+D+NPQ DLQA ARAHRIGQ + V V+R
Sbjct: 405 KQ--PIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIR 462
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFF 214
TVEE V A KL + N I G F
Sbjct: 463 LIGRDTVEEIVYRKAASKLQLTNMVIEGGHF 493
Score = 48 (22.0 bits), Expect = 9.4e-34, Sum P(2) = 9.4e-34
Identities = 25/108 (23%), Positives = 49/108 (45%)
Query: 1122 EVK-GEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSS-DDKTCSVTPAMETAPGFD- 1178
E K G+ TP + A A E+ EQE+ + +S+ + + + S P+ E F+
Sbjct: 538 ETKDGQWTPDALPAAAEGESREQEEGSELNSYGKENHMYLFEGRDYSKEPSKEDRKSFEQ 597
Query: 1179 -IPIEKGVEQSGTEIDAKVKWKNTPL-PG--EAIVAGIEVFKPENKTD 1222
+ ++K + + + ++ K + L PG E + ++ PE D
Sbjct: 598 LVNLQKTLLEKTSHGGRSLRNKGSVLIPGLAEGPIKRKKILSPEELED 645
Score = 41 (19.5 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
Identities = 29/120 (24%), Positives = 49/120 (40%)
Query: 1187 QSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPE-NKTDGDSVEKLEDTV--DDHSLVKELI 1243
+ G E A++ +++ L V+G +V P+ + D V ++D+ L L
Sbjct: 704 EDGDETSAELDYEDLDLTSINYVSG-DVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALE 762
Query: 1244 HRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSG 1303
RS + I + G + S L P+ K + + A VA H T +LSG
Sbjct: 763 ARSAEPRK--IYELAGKMKDLSLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSG 820
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 409 (149.0 bits), Expect = 1.0e-33, P = 1.0e-33
Identities = 84/173 (48%), Positives = 114/173 (65%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEM 64
E L S G S+ N +M+L+ CNHPYL + A E L Y +V+ GKL +
Sbjct: 969 EALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLML 1028
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
L ++L KL+ HRVL FS MT++LD++ED+L ++ Y+Y R+DG +GG R ID+FN
Sbjct: 1029 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1088
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 177
+ F FLLS RAGG+G+NL ADTVII+D+DWNP D+QA +RAHRIGQ +
Sbjct: 1089 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQTK 1141
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 420 (152.9 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 91/188 (48%), Positives = 120/188 (63%)
Query: 19 VHNSVMELRNICNHPYLSQLHAEEV--DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 76
+ N +M L+ CNH YL + + D I + +V GK +LDR+LP+LK
Sbjct: 576 LQNILMLLKRCCNHAYLIEYPLDPTTGDFKIDEQ----LVEASGKFLILDRMLPELKKRG 631
Query: 77 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136
H+VL FS MT +LD++ DY + Y Y RLDG S DR + KF+ D F+FLLS
Sbjct: 632 HKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSS-DPEVFLFLLST 690
Query: 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV-- 194
RAGG+G+NL +ADTVIIFD+DWNPQ DLQAQ R HRIGQ + V+V R T T++E++
Sbjct: 691 RAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANTIDEKILE 750
Query: 195 RASAEHKL 202
RASA+ KL
Sbjct: 751 RASAKRKL 758
Score = 37 (18.1 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 279 KLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGV 321
+L++ DG + ++++D DL+ L + + D K V
Sbjct: 789 ELLKSRDYDGA-VKGTKGKVISDKDLQILLDRSDLMDQAKKRV 830
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 417 (151.9 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 86/186 (46%), Positives = 120/186 (64%)
Query: 19 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHR 78
+ N +M LR CNHPYL + + +V+ GK +LDR+LP+LK H+
Sbjct: 560 LQNIMMLLRKCCNHPYLIEYPLDPATQQFKVD--EDLVKNSGKFLLLDRMLPELKKRGHK 617
Query: 79 VLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138
VL FS MT +LD++ DY + +++ RLDG S DR + +FN D F+FL+S RA
Sbjct: 618 VLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNN-DPEVFLFLVSTRA 676
Query: 139 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV--RA 196
GG+G+NL AADTVII+D+DWNPQ DLQAQ R HRIGQ + V+V R T T+++++ RA
Sbjct: 677 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 736
Query: 197 SAEHKL 202
+A+ KL
Sbjct: 737 AAKRKL 742
Score = 39 (18.8 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 2230 VIAEDKTENEIEEDPVVNSVAVEESKGSEAD 2260
+I + KT ++++ + +EES GS A+
Sbjct: 806 LIDQMKTSETVKKEKMGVFKVLEESSGSNAE 836
Score = 38 (18.4 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 297 RLVTDDDLKALYEAMKIYDAPKT 319
++++D DL+ L + + D KT
Sbjct: 790 KVISDKDLELLLDRSDLIDQMKT 812
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 410 (149.4 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 94/201 (46%), Positives = 121/201 (60%)
Query: 14 SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK 73
+K + N + +LR +HPYL E I H ++ GKL +LD+LL L
Sbjct: 311 AKKVKLQNVLSQLRKCVDHPYLFD-GVEPEPFEIGDH----LIEASGKLHLLDKLLAFLY 365
Query: 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133
+ HRVL FS MT++LD+++DY+ ++ Y Y R+DG G +R I F QQ P FIFL
Sbjct: 366 SKGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQ--PIFIFL 423
Query: 134 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 193
LS RAGGVG+NL AADTVI D+D+NPQ DLQA ARAHRIGQ + V V+R TVEE
Sbjct: 424 LSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEI 483
Query: 194 VRASAEHKLGVANQSITAGFF 214
+ A KL + N I G F
Sbjct: 484 ICRKAASKLKLTNTIIEGGRF 504
Score = 48 (22.0 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 265 VDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKI---Y-DAPKTG 320
+++++R++E A +K + ++G LPS +DL+ E Y D T
Sbjct: 663 IEEKKRKKEEAEHKKKMAWWESNGYQSFCLPSEDSEPEDLEDEAEESSAPLDYADPDSTS 722
Query: 321 VS--------PNVGVKRKG-EHLGALDTQHYGRGK--RAREVRSYEEQWTEEEFEKM 366
+ P GV+ H A D+ H+GRG A E RS E + E KM
Sbjct: 723 IKYVSGDVTHPQAGVEDAVIVHCVADDSGHWGRGGLFTALEARSAEPRKIYELAGKM 779
Score = 40 (19.1 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 1741 SIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWE-AKIDGSSEK 1782
S G Q C S PE+L D + SS AP + A D +S K
Sbjct: 684 SNGYQSFCLPSEDSEPEDLEDEAEESS--APLDYADPDSTSIK 724
Score = 38 (18.4 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2118 SKPVGSEKESIASAVPLDESKGPDA 2142
S+P E E+ S+ PLD + PD+
Sbjct: 697 SEPEDLEDEAEESSAPLDYAD-PDS 720
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 412 (150.1 bits), Expect = 3.2e-33, Sum P(3) = 3.2e-33
Identities = 87/186 (46%), Positives = 118/186 (63%)
Query: 21 NSVMELRNICNHPYLSQLHAEEV---DTLIPKHYLPPI-VRLCGKLEMLDRLLPKLKATD 76
N ++++R +CNHP+L E + + + L + V+ KL ++D+LL +LKA
Sbjct: 1167 NIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEELGELLVKSSSKLVLVDKLLQRLKAEG 1226
Query: 77 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136
H+VL FS M L+++EDYL +++Y Y RLDG R A ID+F + + F+FLLS
Sbjct: 1227 HQVLIFSQMVESLNILEDYLQYREYTYERLDGSIKSEVRQASIDRFQDKGANRFVFLLST 1286
Query: 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 196
RAGGVG+NL ADTVI+FD+DWNPQ DLQAQAR HRIGQ +V V R T T EE +
Sbjct: 1287 RAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEEYLFE 1346
Query: 197 SAEHKL 202
A KL
Sbjct: 1347 CATKKL 1352
Score = 69 (29.3 bits), Expect = 3.2e-33, Sum P(3) = 3.2e-33
Identities = 38/196 (19%), Positives = 65/196 (33%)
Query: 987 EGKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPTVETPPPGFNSPNENPGELTGTK--- 1043
E K+ +V +K +K S E N+ N E +
Sbjct: 1880 EEKEKSTESKSSSNDEKDVCEKVEKGEKEISSDKVDENKEKVENNEKVNVDEKSKDNEKS 1939
Query: 1044 NDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPG 1103
ND+ D+ + E K + K+Q S DD+ + N + + P
Sbjct: 1940 NDSEKSKDNEKSKDDEKSKDDEKSKDDEKSQDDEKSKDDEKSKDDEKSKLEENQDESTP- 1998
Query: 1104 FDIPIEKHNEQSRNQNNPEVKGE---ETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSS 1160
++ E + S + + E+K E E A+ + TNT S + ++
Sbjct: 1999 MEVDKESKSTSSSEKQSIEIKEEKESEKKPQDNDNATENGVKSPSTTNTDSKLTSPSTAT 2058
Query: 1161 DDKTCSVT--PAMETA 1174
T + T P TA
Sbjct: 2059 TTTTTTTTTTPTTTTA 2074
Score = 64 (27.6 bits), Expect = 2.6e-32, Sum P(4) = 2.6e-32
Identities = 40/186 (21%), Positives = 73/186 (39%)
Query: 1648 QDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKSEELG 1707
++K++E++ DE V + + + VDE + + ++ V+V E+ K E
Sbjct: 1882 KEKSTESKSSSN-DEKDVCEKVEKGEKEISSDKVDENKEKVE-NNEKVNVDEKSKDNEKS 1939
Query: 1708 LPSLSSATKEEKIDGSLDKDPDSNL--VVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQP 1765
S S E+ D KD + + +D + S D+ + EN D P
Sbjct: 1940 NDSEKSKDNEKSKDDEKSKDDEKSKDDEKSQDDEKSKDDEKSKDDEKSKLEEN-QDESTP 1998
Query: 1766 SSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLA 1825
E+K SSEK + ++ KE+ + D + + K P + + L
Sbjct: 1999 ME--VDKESKSTSSSEKQSIE----IKEEKESEKKPQDNDNATENGVKSPSTTNTDSKLT 2052
Query: 1826 TPEEKT 1831
+P T
Sbjct: 2053 SPSTAT 2058
Score = 60 (26.2 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 1010 SSDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGD-HTPVS-GHTLASKTEAL 1067
SS T S + V++P PG N NP +++ DA + D +TP L L
Sbjct: 1379 SSSTTTASSSSNVDSPSPGDTPSNSNPFKVSA--GDAPLVEDPNTPSQISQMLKYGAAYL 1436
Query: 1068 KPENKAQAGRIENIANSSPDDKSL 1091
E +A + + I + DK L
Sbjct: 1437 FAETTDEANKQDKIMINEDIDKIL 1460
Score = 58 (25.5 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 44/222 (19%), Positives = 82/222 (36%)
Query: 1113 EQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAME 1172
E N ++K EE S+E+ +S+ EK ++SSD K +E
Sbjct: 1867 EPKSNDKETQIKVEEKEKSTESKSSSN---DEKDVCEKVEKGEKEISSD-KVDENKEKVE 1922
Query: 1173 TAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDT 1232
++ EK + + K K N + E K + K+ D K ++
Sbjct: 1923 NNEKVNVD-EKSKDNEKSNDSEKSK-DNEKSKDDEKSKDDEKSKDDEKSQDDEKSKDDEK 1980
Query: 1233 VDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVA 1292
D K + + D S + + ++ S K +E +S + P D+
Sbjct: 1981 SKDDE--KSKLEENQDESTPMEVDKESKSTSSSEKQSIEIKEEKESEKKPQ-----DN-- 2031
Query: 1293 DHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSAS 1334
D++ E + S S N+ ++ ++ S T PT+ +
Sbjct: 2032 DNATENGVKSPSTTNTDSKLTSPSTATTTTTTTTTTTPTTTT 2073
Score = 58 (25.5 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 21/89 (23%), Positives = 36/89 (40%)
Query: 518 STPMQPKGRGRRIQSGE-QVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPS 576
STPM+ + S E Q + +K P +D+ G + S+ +PS
Sbjct: 1996 STPMEVDKESKSTSSSEKQSIEIKEEKESEKKPQDNDNATENGVKSPSTTNTDSKLTSPS 2055
Query: 577 GGESTATDGNVSSIPTAPVPDSVSPSAVK 605
+T T ++ PT +V P ++K
Sbjct: 2056 TATTTTTT-TTTTTPTTTTATTVKPLSLK 2083
Score = 57 (25.1 bits), Expect = 5.5e-31, Sum P(4) = 5.5e-31
Identities = 37/188 (19%), Positives = 73/188 (38%)
Query: 684 ESKSNLQSENNSGGLR-LSKSVSMGKQDALSQELS-NKIQVQPCGVATSADVAGPDQKPA 741
E + + +S+++S + + + V G+++ S ++ NK +V+ + D D + +
Sbjct: 1881 EKEKSTESKSSSNDEKDVCEKVEKGEKEISSDKVDENKEKVEN-NEKVNVDEKSKDNEKS 1939
Query: 742 EQSVRVVQSNQPIN-LPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGV 800
S + + + + + D S+ + S D D K L EN +
Sbjct: 1940 NDSEKSKDNEKSKDDEKSKDDEKSKDDEKSQDDEKSKDDEKSKDDEKSKLEENQDESTPM 1999
Query: 801 IPILALSNMKAVERVNIQSFEEK-----------ACTNASKSKATLPALDSITEPYTGST 849
+ + E+ +I+ EEK A N KS +T +T P T +T
Sbjct: 2000 EVDKESKSTSSSEKQSIEIKEEKESEKKPQDNDNATENGVKSPSTTNTDSKLTSPSTATT 2059
Query: 850 NTEGISNT 857
T + T
Sbjct: 2060 TTTTTTTT 2067
Score = 56 (24.8 bits), Expect = 6.5e-33, Sum P(3) = 6.5e-33
Identities = 45/213 (21%), Positives = 81/213 (38%)
Query: 1109 EKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQ--EKVTNTSSFVNLADLSSDDKTCS 1166
EK E S++ +N E E E S++ ++ EKV N VN+ + S D++ +
Sbjct: 1883 EKSTE-SKSSSNDEKDVCEKVEKGEKEISSDKVDENKEKVENNEK-VNVDEKSKDNEKSN 1940
Query: 1167 VTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSV 1226
+ EK + ++ D K K E E K + K+ D
Sbjct: 1941 DS-------------EKSKDNEKSKDDEKSKDDEKSKDDEKSQDD-EKSKDDEKSKDDEK 1986
Query: 1227 EKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKS-TEGPSVS 1285
KLE+ D+ S E+ S S ++ ++S K P + ++ + PS +
Sbjct: 1987 SKLEENQDE-STPMEVDKESKSTSSSEKQSIEIKEEKESEKKPQDNDNATENGVKSPSTT 2045
Query: 1286 MKADDVADHSRETPILSGSPINSGTECSTVSVK 1318
+ S T + + + T + +VK
Sbjct: 2046 NTDSKLTSPSTATTTTTTTTTTTPTTTTATTVK 2078
Score = 50 (22.7 bits), Expect = 3.2e-33, Sum P(3) = 3.2e-33
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 557 SPGPDPK-TNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVK-GQSGTI-DP 613
S D K TN P S + + S + ++ NV S P + +P V G + + DP
Sbjct: 1360 STNKDKKQTNTTPISTTTSSSSTTTASSSSNVDSPSPGDTPSNSNPFKVSAGDAPLVEDP 1419
Query: 614 SS 615
++
Sbjct: 1420 NT 1421
Score = 47 (21.6 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 18/87 (20%), Positives = 34/87 (39%)
Query: 597 DSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQ 656
D+ + + VK S T + S + + ++ T T + K +++
Sbjct: 2032 DNATENGVKSPS-TTNTDSKLTSPSTATTTTTTTTTTTPTTTTATTVKPLSLKNPCKESA 2090
Query: 657 SGGVTPRRR-GKRQALGSPPISDVSAG 682
V G +Q L + P+SDV+ G
Sbjct: 2091 YYLVIVNEDFGSQQILRTYPMSDVNQG 2117
Score = 46 (21.3 bits), Expect = 3.2e-28, Sum P(4) = 3.2e-28
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS--SAPAVYST 400
K ++ S E+Q E + EK + + D+ E G++ T S ++P+ +T
Sbjct: 2003 KESKSTSSSEKQSIEIKEEKESEKKPQDNDNATENGVKSPSTTNTDSKLTSPSTATT 2059
Score = 45 (20.9 bits), Expect = 9.4e-30, Sum P(4) = 9.4e-30
Identities = 22/89 (24%), Positives = 31/89 (34%)
Query: 889 VSVPVKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTI 948
V+V K + E + K + S D + D K KS+D SK
Sbjct: 1927 VNVDEKSKDNEKSNDSEKSKDNEKSKDDEKSKDDEKSKDDEK--SQDDEKSKDDEKSKDD 1984
Query: 949 SLRSKQETADVNDVARVMKEIFSETCSSK 977
+E D + V KE S + S K
Sbjct: 1985 EKSKLEENQDESTPMEVDKESKSTSSSEK 2013
Score = 44 (20.5 bits), Expect = 5.5e-31, Sum P(4) = 5.5e-31
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 1088 DKSLPMVPNLETAPPG-FDIPIEKHNEQSRNQNN 1120
D L ++ N++ P F +N+Q+ N NN
Sbjct: 2239 DPELDLLSNVKRGQPNTFSPNPTSNNDQNNNNNN 2272
Score = 43 (20.2 bits), Expect = 3.6e-30, Sum P(4) = 3.6e-30
Identities = 22/92 (23%), Positives = 35/92 (38%)
Query: 1991 VQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIV-PETVPEELGLPS-SPM 2048
V +E K+ S EKQ I + ES E +P + +G+ P T + L S S
Sbjct: 2001 VDKESKSTSSSEKQSIEIKEEKES---EKKPQDNDNATENGVKSPSTTNTDSKLTSPSTA 2057
Query: 2049 VVXXXXXXXXXXXXPSASSIPRGESKGPDAEA 2080
+A+++ K P E+
Sbjct: 2058 TTTTTTTTTTTPTTTTATTVKPLSLKNPCKES 2089
Score = 41 (19.5 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 16/88 (18%), Positives = 39/88 (44%)
Query: 664 RRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQ 723
+RG+ P S+ + +N ++NN+ + S S + Q++ + + + Q +
Sbjct: 2249 KRGQPNTFSPNPTSNNDQNNNNNNNNSNQNNTDNID-SDSGNNNNQNSSTNQQQQQQQSE 2307
Query: 724 PCGVATSADVAGPDQKPAEQSVRVVQSN 751
+ +S + QK +Q ++ S+
Sbjct: 2308 K--IPSSESLRRRIQKVTDQILKKEHSD 2333
Score = 40 (19.1 bits), Expect = 2.6e-32, Sum P(4) = 2.6e-32
Identities = 19/86 (22%), Positives = 32/86 (37%)
Query: 1083 NSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFE 1142
NS P SL A D+ ++ ++E + P+ K + A S E
Sbjct: 1472 NSKPS--SLSGFSKATFASSETDMNVDMNDENFWEKVLPDYKTVKQLEEKLASGSALQSE 1529
Query: 1143 QEKVTNTSSFVNLADLSSDDKTCSVT 1168
+ + ++LA DD SV+
Sbjct: 1530 ESRAIFVQDILDLAQTKKDDVVDSVS 1555
Score = 39 (18.8 bits), Expect = 9.4e-30, Sum P(4) = 9.4e-30
Identities = 17/66 (25%), Positives = 24/66 (36%)
Query: 1592 ESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDISSEHAFGSSLVLQDKA 1651
E +K D + K +L D + E KS + EK I + S QD
Sbjct: 1973 EKSKDDEKSKDDEKSKLEENQDESTPMEVDKESKSTSSSEKQSIEIKEEKESEKKPQDND 2032
Query: 1652 SEAEIG 1657
+ E G
Sbjct: 2033 NATENG 2038
Score = 38 (18.4 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 2216 ENTSEGMGGPSPPLVIAEDKTENEIEEDPV 2245
+++S+G GG ++ +D E ++ V
Sbjct: 1629 DSSSDGGGGSDTDFILPDDGDSYESDDQHV 1658
Score = 38 (18.4 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 18/103 (17%), Positives = 45/103 (43%)
Query: 2158 IPVPEEADGPASFLAAEEEKNECSDKEPVGSSVS--QIESKEPEAKAFEPMDVVDGAVAL 2215
I V E+ S ++ +EK+ C E +S +++ + + + E ++V + +
Sbjct: 1877 IKVEEKEKSTESKSSSNDEKDVCEKVEKGEKEISSDKVDENKEKVENNEKVNVDEKSKDN 1936
Query: 2216 ENTSEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESKGSE 2258
E +++ ++K++++ + S E+SK E
Sbjct: 1937 EKSNDSEKSKDNEKSKDDEKSKDDEKSKDDEKSQDDEKSKDDE 1979
Score = 37 (18.1 bits), Expect = 2.9e-30, Sum P(4) = 2.9e-30
Identities = 20/138 (14%), Positives = 51/138 (36%)
Query: 1023 ETPPPGFNSPNENPGELT-GTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIE-- 1079
+TP + P+ + + G+ N+ + + + G + S + + P+ + +
Sbjct: 2876 QTPEGIYMKPHASITVINHGSNNNNNNNNINNNMMGSGIGSPSISTSPQQRQPNLPLSPS 2935
Query: 1080 NIANSSPDDKSLPMVPNLETAPPGFDIPIEK--HNEQSRNQNNPEVKGEETPVSSEAPAS 1137
+ S + P+ P + P + H +Q + Q ++P + P+
Sbjct: 2936 HHQQSQQHHQQQPLSPQRQQIPKSTQQKSHQQHHQQQQQQQQQNHHHHHQSPQQHQLPSI 2995
Query: 1138 TEAFEQEKVTNTSSFVNL 1155
E + + SF+ +
Sbjct: 2996 IEVEVKLVGQDAGSFIKM 3013
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 428 (155.7 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 93/215 (43%), Positives = 129/215 (60%)
Query: 7 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV--DTLIPKHYLPPIVRLCGKLEM 64
N G+ G + S+ N +MEL+ NHP++ ++ + + L ++ GK+ +
Sbjct: 703 NEGTKGQKQ--SLLNIMMELKKASNHPFMFPSAETKILEGSTRREDVLRALITSSGKMML 760
Query: 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124
LD+LL KLK HRVL FS M ++LD++ DY+ ++ Y Y RLDG R I+ +N
Sbjct: 761 LDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRRLAIEHYNA 820
Query: 125 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRF 184
DS F F+LS RAGG+G+NL ADTVI+FD+DWNPQ DLQA ARAHRIGQ + V V R
Sbjct: 821 PDSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRL 880
Query: 185 ETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTS 219
+ TVEE+V A +KL + +I G D S
Sbjct: 881 VSKDTVEEEVIERARNKLLLEFITIQRGVTDKEAS 915
Score = 42 (19.8 bits), Expect = 6.3e-31, Sum P(4) = 6.3e-31
Identities = 16/100 (16%), Positives = 35/100 (35%)
Query: 1063 KTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPE 1122
+ +A N ++N ++ S P +A P + + H EQ R+++
Sbjct: 1295 RDKASNGSNTTAKRAVDNHHRNARKSTSRPHASASVSASPAPSLQRKGHREQDRSRHRSH 1354
Query: 1123 VKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDD 1162
G + + ++ + +D SS+D
Sbjct: 1355 THGGRDSMERHNTPNRDS-RARSINENDRRYRPSDASSED 1393
Score = 40 (19.1 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 1313 STVSVKTDVGNHPQNVEPTSASPERS 1338
S + K V NH +N +++ P S
Sbjct: 1302 SNTTAKRAVDNHHRNARKSTSRPHAS 1327
Score = 39 (18.8 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 1773 EAKIDGSSEKDPVSSQSVLEGSKETVA-EAGDQMDISIMPEKLPEHLDIPASLATPEEKT 1831
E K + + D V+E ++ AGD+ D K + S+
Sbjct: 1016 EIKAEEKKKADEKYLADVIEQNRPRKRIVAGDERDTRA-ERKAKRQARVQVSM----NDD 1070
Query: 1832 EGSEKDPDSSFAAQEDPKESVVE 1854
+G + +P+ A+ DPK +VE
Sbjct: 1071 DGDDSEPN----AKADPKRPLVE 1089
Score = 39 (18.8 bits), Expect = 6.3e-31, Sum P(4) = 6.3e-31
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1050 GDHTPVSGHTLASKTEALKPENKA 1073
GD + H + KTE L E+K+
Sbjct: 1251 GDKFFLEEHRVERKTERLNAEDKS 1274
Score = 37 (18.1 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 510 SQSASACPSTPMQPKGRGRRIQS 532
S S SA P+ +Q KG + +S
Sbjct: 1327 SASVSASPAPSLQRKGHREQDRS 1349
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 535 QVPRRRGKKI----GLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGE 579
++ +RRG+++ G DI S + + ++ Q+E + GGE
Sbjct: 939 RILKRRGQRMFEQTGNQAKLEQLDIDSVLANAELHQTEQAEGIQADGGE 987
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 411 (149.7 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 95/211 (45%), Positives = 124/211 (58%)
Query: 6 ENLGSIGNSKGRSV--HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLE 63
++L + N + V N + +LR +HPYL E + H + GKL
Sbjct: 296 KDLDAFENETAKKVKLQNILSQLRKCVDHPYLFD-GVEPEPFEVGDH----LTEASGKLH 350
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LD+LL L + HRVL FS MT++LD+++DY+ ++ Y Y R+DG G +R I F
Sbjct: 351 LLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG 410
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
QQ P F+FLLS RAGGVG+NL AADTVI D+D+NPQ DLQA ARAHRIGQ + V V+R
Sbjct: 411 QQ--PIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIR 468
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFF 214
TVEE V A KL + N I G F
Sbjct: 469 LIGRDTVEEIVYRKAASKLQLTNMIIEGGHF 499
Score = 45 (20.9 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 346 KRAREVRSYEEQ---WTEEEFEKMCQAESSDSPKLKEEGLEKS 385
KR +E ++++ W ++ C P+ E G E S
Sbjct: 662 KRQKEEAEHKKKMAWWESNNYQSFCLPSEESEPEDLENGEESS 704
Score = 42 (19.8 bits), Expect = 8.2e-33, Sum P(2) = 8.2e-33
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 2151 EGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESK--EPEAKAFEPMDV 2208
E S +P E P EE E ++P +S+ + P+A A + + V
Sbjct: 678 ESNNYQSFCLPSEESEPEDLENGEESSAELDYQDPDATSLKYVSGDVTHPQAGAEDALIV 737
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 408 (148.7 bits), Expect = 4.7e-33, Sum P(2) = 4.7e-33
Identities = 88/194 (45%), Positives = 123/194 (63%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 734 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 790
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 791 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 850
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHR G V + R T
Sbjct: 851 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKG 910
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 911 SVEEDILERAKKKM 924
Score = 58 (25.5 bits), Expect = 4.7e-33, Sum P(2) = 4.7e-33
Identities = 26/117 (22%), Positives = 52/117 (44%)
Query: 1816 EHLDIPASLATPEEK--TEG-SEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKS 1872
E++D S+ P +K TEG SE+ P+ +++P+E EA ++ + EK
Sbjct: 1367 ENMDEITSVKHPNKKIKTEGDSEEKPEPDVCIKKEPEEKR-EAKEKENKRELKREIKEKE 1425
Query: 1873 SE-DLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKECAAEAADQMCVSEGCVVVT 1928
+ D+ E ++ E + + +SK + E + + +S+ V +T
Sbjct: 1426 DKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHIT 1482
Score = 56 (24.8 bits), Expect = 7.6e-33, Sum P(2) = 7.6e-33
Identities = 33/120 (27%), Positives = 50/120 (41%)
Query: 2079 EANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESK 2138
EA + A GG+ R+ + S V+EE I+ S P+ SEK D+ +
Sbjct: 1315 EAQRLSGA--GGSKRRKARAKKNKAMKSIKVKEE-IKSDSSPLPSEKSDEDD----DKKE 1367
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAE-EEKNECSDKEPVGSSVSQIESKE 2197
D E++S + + EE P + E EEK E +KE +I+ KE
Sbjct: 1368 NMD-EITS-VKHPNKKIKTEGDSEEKPEPDVCIKKEPEEKREAKEKENKRELKREIKEKE 1425
Score = 54 (24.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 35/178 (19%), Positives = 72/178 (40%)
Query: 1116 RNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAP 1175
+N+ +K +E S +P +E +++ + + + +K E P
Sbjct: 1334 KNKAMKSIKVKEEIKSDSSPLPSEKSDEDD-DKKENMDEITSVKHPNKKIKTEGDSEEKP 1392
Query: 1176 GFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDD 1235
D+ I+K E+ +AK K L E + + E+K D +++ +
Sbjct: 1393 EPDVCIKKEPEEKR---EAKEKENKRELKRE-------IKEKEDKKD---IKEKDFKEKR 1439
Query: 1236 HSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL-ETPL-IMKSTEGPSVSMKADDV 1291
+ VKE I + D + + + E S K L + P+ I S E +S +++++
Sbjct: 1440 ENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPISEESEEL 1497
Score = 53 (23.7 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 31/154 (20%), Positives = 61/154 (39%)
Query: 1781 EKDPVSSQSVLE--GSKETVAEAGDQMDISIMPEK-LPEHLDIPASLATPEEKTEGSEKD 1837
+K+P + E +E E ++ D + EK E + A +EK EK
Sbjct: 1399 KKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKL 1458
Query: 1838 PDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANE-----EEMIEG 1892
+S ++E K+S + + G + + SE+L S+ E + ++
Sbjct: 1459 NESKSESKERSKKSSLSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQ 1518
Query: 1893 FDNDPTGISMA--VMDSKECAAEAADQM--CVSE 1922
D G+S + +++C + D + C+ E
Sbjct: 1519 LDRPEKGLSEREQLEHTRQCLIKIGDHITECLKE 1552
Score = 49 (22.3 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 21/97 (21%), Positives = 42/97 (43%)
Query: 2108 DVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADG- 2166
D++E+ + K KE+I + E K +++ S+ + + PV A G
Sbjct: 1429 DIKEKDFK--EKRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGE 1486
Query: 2167 PASFLAAEEEKNE-----CSDK-EPVGSSVSQIESKE 2197
P EE ++ C ++ PV +++ Q++ E
Sbjct: 1487 PVPISEESEELDQKTFSICKERMRPVKAALKQLDRPE 1523
Score = 45 (20.9 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 51/230 (22%), Positives = 89/230 (38%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHS----PVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH P+H
Sbjct: 1169 GCIKALKDNSSGTERTGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELIPLH 1219
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQS 1751
EE ++ TK D K+ DSNL++ E GS I D +
Sbjct: 1220 KSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLT 1279
Query: 1752 GVVVPENLSDFCQPSS--SLAPWEAKIDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDIS 1808
++P++ Q + A + K+ + S GSK A A + + +
Sbjct: 1280 HKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQRLSGAGGSKRRKARA--KKNKA 1337
Query: 1809 IMPEKLPEHLDIPASLATPEEKTEGSEKDPD-SSFAAQEDPKESVVEAGD 1857
+ K+ E + +S E+ E +K + + + P + + GD
Sbjct: 1338 MKSIKVKEEIKSDSSPLPSEKSDEDDDKKENMDEITSVKHPNKKIKTEGD 1387
Score = 45 (20.9 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 401
KR +V+ ++ + + EK+ +++S + K+ L + + +S P S E
Sbjct: 1438 KRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPISEE 1493
Score = 44 (20.5 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 1061 ASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKH-NEQSRNQN 1119
A K+ +K E K+ + + + + DDK N++ +I KH N++ + +
Sbjct: 1337 AMKSIKVKEEIKSDSSPLPSEKSDEDDDKK----ENMD------EITSVKHPNKKIKTEG 1386
Query: 1120 NPEVKGE-ETPVSSEAPASTEAFEQE 1144
+ E K E + + E EA E+E
Sbjct: 1387 DSEEKPEPDVCIKKEPEEKREAKEKE 1412
Score = 41 (19.5 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 20/84 (23%), Positives = 33/84 (39%)
Query: 1767 SSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLAT 1826
SS P E + +K+ + + ++ + + GD E+ PE D+
Sbjct: 1351 SSPLPSEKSDEDDDKKENMDEITSVKHPNKKIKTEGDS-------EEKPEP-DVCIK-KE 1401
Query: 1827 PEEKTEGSEKDPDSSFAAQEDPKE 1850
PEEK E EK+ + KE
Sbjct: 1402 PEEKREAKEKENKRELKREIKEKE 1425
Score = 41 (19.5 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 1244 HRSPDHSDMVIGNVPGNTSED 1264
HRS DH + G++ T D
Sbjct: 1698 HRSRDHRSSLEGSLKDRTHSD 1718
Score = 41 (19.5 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 32/135 (23%), Positives = 54/135 (40%)
Query: 1699 EREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPEN 1758
+RE E+ L KE++ D K+ D K +I + D + + ++
Sbjct: 1405 KREAKEKENKRELKREIKEKE-DKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKS 1463
Query: 1759 LSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLP-EH 1817
S SSL+ I S E P+S +S E ++T + ++M P K +
Sbjct: 1464 ESKERSKKSSLSDAPVHITASGEPVPISEESE-ELDQKTFSICKERM----RPVKAALKQ 1518
Query: 1818 LDIPASLATPEEKTE 1832
LD P + E+ E
Sbjct: 1519 LDRPEKGLSEREQLE 1533
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 408 (148.7 bits), Expect = 4.7e-33, Sum P(2) = 4.7e-33
Identities = 88/194 (45%), Positives = 123/194 (63%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 735 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 791
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 792 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 851
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHR G V + R T
Sbjct: 852 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKG 911
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 912 SVEEDILERAKKKM 925
Score = 58 (25.5 bits), Expect = 4.7e-33, Sum P(2) = 4.7e-33
Identities = 26/117 (22%), Positives = 52/117 (44%)
Query: 1816 EHLDIPASLATPEEK--TEG-SEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKS 1872
E++D S+ P +K TEG SE+ P+ +++P+E EA ++ + EK
Sbjct: 1368 ENMDEITSVKHPNKKIKTEGDSEEKPEPDVCIKKEPEEKR-EAKEKENKRELKREIKEKE 1426
Query: 1873 SE-DLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKECAAEAADQMCVSEGCVVVT 1928
+ D+ E ++ E + + +SK + E + + +S+ V +T
Sbjct: 1427 DKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHIT 1483
Score = 56 (24.8 bits), Expect = 7.6e-33, Sum P(2) = 7.6e-33
Identities = 33/120 (27%), Positives = 50/120 (41%)
Query: 2079 EANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESK 2138
EA + A GG+ R+ + S V+EE I+ S P+ SEK D+ +
Sbjct: 1316 EAQRLSGA--GGSKRRKARAKKNKAMKSIKVKEE-IKSDSSPLPSEKSDEDD----DKKE 1368
Query: 2139 GPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAE-EEKNECSDKEPVGSSVSQIESKE 2197
D E++S + + EE P + E EEK E +KE +I+ KE
Sbjct: 1369 NMD-EITS-VKHPNKKIKTEGDSEEKPEPDVCIKKEPEEKREAKEKENKRELKREIKEKE 1426
Score = 54 (24.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 35/178 (19%), Positives = 72/178 (40%)
Query: 1116 RNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAP 1175
+N+ +K +E S +P +E +++ + + + +K E P
Sbjct: 1335 KNKAMKSIKVKEEIKSDSSPLPSEKSDEDD-DKKENMDEITSVKHPNKKIKTEGDSEEKP 1393
Query: 1176 GFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDD 1235
D+ I+K E+ +AK K L E + + E+K D +++ +
Sbjct: 1394 EPDVCIKKEPEEKR---EAKEKENKRELKRE-------IKEKEDKKD---IKEKDFKEKR 1440
Query: 1236 HSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL-ETPL-IMKSTEGPSVSMKADDV 1291
+ VKE I + D + + + E S K L + P+ I S E +S +++++
Sbjct: 1441 ENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPISEESEEL 1498
Score = 53 (23.7 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 31/154 (20%), Positives = 61/154 (39%)
Query: 1781 EKDPVSSQSVLE--GSKETVAEAGDQMDISIMPEK-LPEHLDIPASLATPEEKTEGSEKD 1837
+K+P + E +E E ++ D + EK E + A +EK EK
Sbjct: 1400 KKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKL 1459
Query: 1838 PDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANE-----EEMIEG 1892
+S ++E K+S + + G + + SE+L S+ E + ++
Sbjct: 1460 NESKSESKERSKKSSLSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQ 1519
Query: 1893 FDNDPTGISMA--VMDSKECAAEAADQM--CVSE 1922
D G+S + +++C + D + C+ E
Sbjct: 1520 LDRPEKGLSEREQLEHTRQCLIKIGDHITECLKE 1553
Score = 49 (22.3 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 21/97 (21%), Positives = 42/97 (43%)
Query: 2108 DVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADG- 2166
D++E+ + K KE+I + E K +++ S+ + + PV A G
Sbjct: 1430 DIKEKDFK--EKRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGE 1487
Query: 2167 PASFLAAEEEKNE-----CSDK-EPVGSSVSQIESKE 2197
P EE ++ C ++ PV +++ Q++ E
Sbjct: 1488 PVPISEESEELDQKTFSICKERMRPVKAALKQLDRPE 1524
Score = 45 (20.9 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 51/230 (22%), Positives = 89/230 (38%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHS----PVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH P+H
Sbjct: 1170 GCIKALKDNSSGTERTGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELIPLH 1220
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQS 1751
EE ++ TK D K+ DSNL++ E GS I D +
Sbjct: 1221 KSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLT 1280
Query: 1752 GVVVPENLSDFCQPSS--SLAPWEAKIDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDIS 1808
++P++ Q + A + K+ + S GSK A A + + +
Sbjct: 1281 HKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQRLSGAGGSKRRKARA--KKNKA 1338
Query: 1809 IMPEKLPEHLDIPASLATPEEKTEGSEKDPD-SSFAAQEDPKESVVEAGD 1857
+ K+ E + +S E+ E +K + + + P + + GD
Sbjct: 1339 MKSIKVKEEIKSDSSPLPSEKSDEDDDKKENMDEITSVKHPNKKIKTEGD 1388
Score = 45 (20.9 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 401
KR +V+ ++ + + EK+ +++S + K+ L + + +S P S E
Sbjct: 1439 KRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPISEE 1494
Score = 44 (20.5 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 1061 ASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKH-NEQSRNQN 1119
A K+ +K E K+ + + + + DDK N++ +I KH N++ + +
Sbjct: 1338 AMKSIKVKEEIKSDSSPLPSEKSDEDDDKK----ENMD------EITSVKHPNKKIKTEG 1387
Query: 1120 NPEVKGE-ETPVSSEAPASTEAFEQE 1144
+ E K E + + E EA E+E
Sbjct: 1388 DSEEKPEPDVCIKKEPEEKREAKEKE 1413
Score = 41 (19.5 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 20/84 (23%), Positives = 33/84 (39%)
Query: 1767 SSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLAT 1826
SS P E + +K+ + + ++ + + GD E+ PE D+
Sbjct: 1352 SSPLPSEKSDEDDDKKENMDEITSVKHPNKKIKTEGDS-------EEKPEP-DVCIK-KE 1402
Query: 1827 PEEKTEGSEKDPDSSFAAQEDPKE 1850
PEEK E EK+ + KE
Sbjct: 1403 PEEKREAKEKENKRELKREIKEKE 1426
Score = 41 (19.5 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 1244 HRSPDHSDMVIGNVPGNTSED 1264
HRS DH + G++ T D
Sbjct: 1699 HRSRDHRSSLEGSLKDRTHSD 1719
Score = 41 (19.5 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 32/135 (23%), Positives = 54/135 (40%)
Query: 1699 EREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPEN 1758
+RE E+ L KE++ D K+ D K +I + D + + ++
Sbjct: 1406 KREAKEKENKRELKREIKEKE-DKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKS 1464
Query: 1759 LSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLP-EH 1817
S SSL+ I S E P+S +S E ++T + ++M P K +
Sbjct: 1465 ESKERSKKSSLSDAPVHITASGEPVPISEESE-ELDQKTFSICKERM----RPVKAALKQ 1519
Query: 1818 LDIPASLATPEEKTE 1832
LD P + E+ E
Sbjct: 1520 LDRPEKGLSEREQLE 1534
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 413 (150.4 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
Identities = 95/211 (45%), Positives = 124/211 (58%)
Query: 6 ENLGSIGNSKGRSV--HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLE 63
++L + N + V N + +LR +HPYL E + +H ++ GKL
Sbjct: 290 KDLDAFENETAKKVKLQNILTQLRKCVDHPYLFD-GVEPEPFEVGEH----LIEASGKLH 344
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LDRLL L + HRVL FS MT +LD+++DY+ ++ Y Y R+DG G +R I F
Sbjct: 345 LLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG 404
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
Q P F+FLLS RAGGVG+NL AADTVI D+D+NPQ DLQA ARAHRIGQ + V V+R
Sbjct: 405 NQ--PIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIR 462
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFF 214
TVEE V A KL + N I G F
Sbjct: 463 LIGRDTVEEIVYRKAASKLQLTNMVIEGGHF 493
Score = 42 (19.8 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 1584 SSSKDIIAESAKADVVLDEHGKVQLLPGADNPEGGVIVPEHKSE 1627
SS +DI +S + D LP A GG + PE SE
Sbjct: 525 SSMEDIDLKSILGETK-DGQWTPDALPAAAAAGGGSLEPEEGSE 567
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 375 (137.1 bits), Expect = 6.4e-33, P = 6.4e-33
Identities = 84/180 (46%), Positives = 111/180 (61%)
Query: 4 VEENLGSIGNSKGRSVHN------SVMELRNICNHPYLSQLHAEEV--DTL------IPK 49
+E+N + +KG + HN ++MELR CNHPYL E++ D P
Sbjct: 137 LEKNFSFL--TKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD 194
Query: 50 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 109
L +++ GKL ++D+LLPKL A H+VL FS M R LD++EDYL ++Y Y R+DG
Sbjct: 195 FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGR 254
Query: 110 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQAR 169
G R A ID+F + DS F+FLL RAGG+G+NL AADT IIFD+DWNPQ DLQ R
Sbjct: 255 VRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQVTIR 314
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 408 (148.7 bits), Expect = 7.5e-33, Sum P(2) = 7.5e-33
Identities = 88/194 (45%), Positives = 123/194 (63%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 734 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 790
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG G R +D FN + S
Sbjct: 791 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE 850
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHR G V + R T
Sbjct: 851 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKG 910
Query: 189 TVEEQVRASAEHKL 202
+VEE + A+ K+
Sbjct: 911 SVEEDILERAKKKM 924
Score = 56 (24.8 bits), Expect = 7.5e-33, Sum P(2) = 7.5e-33
Identities = 33/121 (27%), Positives = 50/121 (41%)
Query: 2079 EANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEK-ESIASAVPLDES 2137
EA + A GG+ R+ + S V+EE I+ S P+ SEK + +
Sbjct: 1315 EAQRLSGA--GGSKRRKARAKKNKAMKSIKVKEE-IKSDSSPLPSEKSDEDDDKDEITSV 1371
Query: 2138 KGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAE-EEKNECSDKEPVGSSVSQIESK 2196
K P+ ++ + EG EE P + E EEK E +KE +I+ K
Sbjct: 1372 KHPNKKIKT----EGDS-------EEKPEPDVCIKKEPEEKREAKEKENKRELKREIKEK 1420
Query: 2197 E 2197
E
Sbjct: 1421 E 1421
Score = 54 (24.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 29/122 (23%), Positives = 49/122 (40%)
Query: 1695 VHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVV 1754
+ V E KS+ LPS S ++K + + K P+ + DS+ + D C
Sbjct: 1341 IKVKEEIKSDSSPLPSEKSDEDDDKDEITSVKHPNKKIKTEGDSEEK--PEPDVCIKKE- 1397
Query: 1755 VPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKL 1814
PE + + + + +I +K + + E + V EA Q + I EKL
Sbjct: 1398 -PEEKRE-AKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEA-IQKEKDIKEEKL 1454
Query: 1815 PE 1816
E
Sbjct: 1455 NE 1456
Score = 53 (23.7 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 31/130 (23%), Positives = 56/130 (43%)
Query: 1806 DISIMP-EKLPEHLDIP--ASLATPEEK--TEG-SEKDPDSSFAAQEDPKESVVEAGDQM 1859
D S +P EK E D S+ P +K TEG SE+ P+ +++P+E EA ++
Sbjct: 1350 DSSPLPSEKSDEDDDKDEITSVKHPNKKIKTEGDSEEKPEPDVCIKKEPEEKR-EAKEKE 1408
Query: 1860 GVSLGGATVMEKSSE-DLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKECAAEAADQM 1918
+ EK + D+ E ++ E + + +SK + E + +
Sbjct: 1409 NKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKSESKERSKKS 1468
Query: 1919 CVSEGCVVVT 1928
+S+ V +T
Sbjct: 1469 SLSDAPVHIT 1478
Score = 53 (23.7 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 31/154 (20%), Positives = 61/154 (39%)
Query: 1781 EKDPVSSQSVLE--GSKETVAEAGDQMDISIMPEK-LPEHLDIPASLATPEEKTEGSEKD 1837
+K+P + E +E E ++ D + EK E + A +EK EK
Sbjct: 1395 KKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKL 1454
Query: 1838 PDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANE-----EEMIEG 1892
+S ++E K+S + + G + + SE+L S+ E + ++
Sbjct: 1455 NESKSESKERSKKSSLSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQ 1514
Query: 1893 FDNDPTGISMA--VMDSKECAAEAADQM--CVSE 1922
D G+S + +++C + D + C+ E
Sbjct: 1515 LDRPEKGLSEREQLEHTRQCLIKIGDHITECLKE 1548
Score = 51 (23.0 bits), Expect = 9.8e-32, Sum P(3) = 9.8e-32
Identities = 53/229 (23%), Positives = 90/229 (39%)
Query: 1642 GSSLVLQDKASEAE-IGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHS----PVH 1696
G L+D +S E G R+ + V G + R +SGV + + +SH P+H
Sbjct: 1169 GCIKALKDNSSGTERTGGRLGK--VKGPTFR-ISGV------QVNAKLVISHEEELIPLH 1219
Query: 1697 VVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVV--LEDSKGS---IGDQMDCCQS 1751
EE ++ TK D K+ DSNL++ E GS I D +
Sbjct: 1220 KSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLT 1279
Query: 1752 GVVVPENLSDFCQPSS--SLAPWEAKIDGSS-EKDPVSSQSVLEGSKETVAEAGDQMDIS 1808
++P++ Q + A + K+ + S GSK A A + + +
Sbjct: 1280 HKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQRLSGAGGSKRRKARA--KKNKA 1337
Query: 1809 IMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGD 1857
+ K+ E + +S P EK++ E D + + P + + GD
Sbjct: 1338 MKSIKVKEEIKSDSS-PLPSEKSD--EDDDKDEITSVKHPNKKIKTEGD 1383
Score = 50 (22.7 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 36/180 (20%), Positives = 70/180 (38%)
Query: 1114 QSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMET 1173
++R + N +K + V E + + EK + + +K E
Sbjct: 1329 KARAKKNKAMKSIK--VKEEIKSDSSPLPSEKSDEDDDKDEITSVKHPNKKIKTEGDSEE 1386
Query: 1174 APGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTV 1233
P D+ I+K E+ +AK K L E + + E+K D +++ +
Sbjct: 1387 KPEPDVCIKKEPEEKR---EAKEKENKRELKRE-------IKEKEDKKD---IKEKDFKE 1433
Query: 1234 DDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPL-ETPL-IMKSTEGPSVSMKADDV 1291
+ VKE I + D + + + E S K L + P+ I S E +S +++++
Sbjct: 1434 KRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPISEESEEL 1493
Score = 49 (22.3 bits), Expect = 9.8e-32, Sum P(3) = 9.8e-32
Identities = 21/97 (21%), Positives = 42/97 (43%)
Query: 2108 DVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADG- 2166
D++E+ + K KE+I + E K +++ S+ + + PV A G
Sbjct: 1425 DIKEKDFK--EKRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGE 1482
Query: 2167 PASFLAAEEEKNE-----CSDK-EPVGSSVSQIESKE 2197
P EE ++ C ++ PV +++ Q++ E
Sbjct: 1483 PVPISEESEELDQKTFSICKERMRPVKAALKQLDRPE 1519
Score = 49 (22.3 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 27/84 (32%), Positives = 36/84 (42%)
Query: 1767 SSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPASLAT 1826
SS P E K D +KD ++S V +K+ E GD E+ PE D+
Sbjct: 1351 SSPLPSE-KSDEDDDKDEITS--VKHPNKKIKTE-GDS-------EEKPEP-DVCIK-KE 1397
Query: 1827 PEEKTEGSEKDPDSSFAAQEDPKE 1850
PEEK E EK+ + KE
Sbjct: 1398 PEEKREAKEKENKRELKREIKEKE 1421
Score = 45 (20.9 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 44/217 (20%), Positives = 86/217 (39%)
Query: 1621 VPEHKSENMGEKDDISS-EHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDE 1679
+P KS+ +KD+I+S +H +K + E GD ++P+ D + E
Sbjct: 1354 LPSEKSDEDDDKDEITSVKHP--------NKKIKTE-GDSEEKPEPDVCIKKE-----PE 1399
Query: 1680 LVDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSK 1739
EA + + E+E +++ +E K+ ++ K+ D L +SK
Sbjct: 1400 EKREAKEKENKRELKREIKEKEDKKDIKEKDFKEK-RENKVKEAIQKEKDIKEEKLNESK 1458
Query: 1740 G---------SIGDQ-MDCCQSGVVVP--ENLSDFCQPSSSLA-----PWEAKIDGSSEK 1782
S+ D + SG VP E + Q + S+ P +A +
Sbjct: 1459 SESKERSKKSSLSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRP 1518
Query: 1783 DP-VSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHL 1818
+ +S + LE +++ + + GD + + PE +
Sbjct: 1519 EKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQI 1555
Score = 45 (20.9 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 346 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 401
KR +V+ ++ + + EK+ +++S + K+ L + + +S P S E
Sbjct: 1434 KRENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPISEE 1489
Score = 41 (19.5 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 1244 HRSPDHSDMVIGNVPGNTSED 1264
HRS DH + G++ T D
Sbjct: 1694 HRSRDHRSSLEGSLKDRTHSD 1714
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 406 (148.0 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 90/227 (39%), Positives = 133/227 (58%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL++LD+LL LK HRVL +S T++++++ED++ F++Y+YLRLDG + DR ++
Sbjct: 1767 GKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMV 1826
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
D F Q D F FLLS RA G+G+NL +ADTVI +D+DWNP VD QAQ RAHR+GQ R V
Sbjct: 1827 DDF-QSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPV 1885
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR---REYLESLLRECKK 236
V R T T+EE++ A+ K + + I G F++N D+ E + LL + +
Sbjct: 1886 TVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPEELDQVGENEAISFLLDDDEL 1945
Query: 237 EEXXXXXXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRG 283
EE R + E +V DK ++ T + + +G
Sbjct: 1946 EERFKNQIDPATGKK--RKQPEPEVPSIADKPFSPNDIPTTKPVNKG 1990
Score = 59 (25.8 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 24/104 (23%), Positives = 34/104 (32%)
Query: 988 GKDXXXXXXXXXXXXXEVAKKQSSDDKTCSVTPTVETPPPGFNSPNE-----NPGELTGT 1042
G D ++D + S +PT PP G PG +G
Sbjct: 2028 GGDTSTASTTTTATTTSSTTSSTNDPSSTSTSPTTSPPPTGVKPTKAAKVPGKPGRPSGK 2087
Query: 1043 KNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSP 1086
+ TP +T S T + P A I + AN+SP
Sbjct: 2088 PKGYYKKAPATPTPSNTTLS-TPSTSPTMVTTAP-IGS-ANTSP 2128
Score = 56 (24.8 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 4 VEENLGSIGNSK-G--RSVHNSVMELRNICNHP 33
+ E LG S+ G +++ N VM+ R +CNHP
Sbjct: 1428 ITELLGGASFSEQGSMKALMNFVMQFRKVCNHP 1460
Score = 51 (23.0 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 28/120 (23%), Positives = 48/120 (40%)
Query: 498 QPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGE-QVPRRRGKKIGLVLPAASDDIP 556
QP +A S + P+T KGR + QS E +VP+++G P
Sbjct: 1963 QPEPEVPSIADKPFSPNDIPTTKPVNKGRPPKEQSKEPKVPKKKG--------------P 2008
Query: 557 SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSA 616
PG ++ ++E+ GG+ S+ TA S + S S + P+++
Sbjct: 2009 KPG-----YKRIKTEAGGGGGGDGGGDTSTASTTTTATTTSSTTSSTNDPSSTSTSPTTS 2063
Score = 49 (22.3 bits), Expect = 9.7e-32, Sum P(3) = 9.7e-32
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 496 SSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRR-RGKKIGLVLPAASDD 554
S+ PTT+ P A+ P P +P G+ + ++ P L P+ S
Sbjct: 2057 STSPTTSPPPTGVKPTKAAKVPGKPGRPSGKPKGYY--KKAPATPTPSNTTLSTPSTSPT 2114
Query: 555 IPSPGPDPKTNEQPQ 569
+ + P N P+
Sbjct: 2115 MVTTAPIGSANTSPK 2129
Score = 48 (22.0 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 21/81 (25%), Positives = 31/81 (38%)
Query: 1290 DVADHSRETPILSGSPINSGT-ECSTVSVKTDVGNHPQNVEPTSAS--PERSG-PQNSAV 1345
D + S T + S S T + S+ S P V+PT A+ P + G P
Sbjct: 2030 DTSTASTTTTATTTSSTTSSTNDPSSTSTSPTTSPPPTGVKPTKAAKVPGKPGRPSGKPK 2089
Query: 1346 GFCDKSEI-PSMEAEVAKCPS 1365
G+ K+ P+ PS
Sbjct: 2090 GYYKKAPATPTPSNTTLSTPS 2110
Score = 37 (18.1 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1180 PIEKGVEQSGTEIDAKVKWKNTPLPG 1205
P+ KG + KV K P PG
Sbjct: 1986 PVNKGRPPKEQSKEPKVPKKKGPKPG 2011
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 399 (145.5 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 86/168 (51%), Positives = 108/168 (64%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LKA HRVL + MTR++D+ME+YLT++ Y+Y RLDG T DR +
Sbjct: 1321 GKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTV 1380
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F QQ F+FLLS RAGG+G+NL AADTVI +D+DWNP +D QA RAHR+GQ R V
Sbjct: 1381 ADF-QQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1439
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSIT---AGFFDNNTSAEDRR 224
V R T T+EE++R A K V I+ AG D NT D +
Sbjct: 1440 TVYRLITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTRNRDSK 1487
Score = 60 (26.2 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 496 SSQPTTAFVPVAPGSQSASACPSTPMQPKGRGR 528
S++P+ A PV+ + STP+ +GRGR
Sbjct: 1552 SAKPSGAATPVSTAENIGTPSASTPVPKRGRGR 1584
Score = 56 (24.8 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 10 SIGN-SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 51
++G+ + ++ N VM+ R +CNHP L + AE H+
Sbjct: 1073 AVGDETDSTTLMNLVMQFRKVCNHPDLFE-RAETKSPFSLAHF 1114
Score = 46 (21.3 bits), Expect = 3.5e-31, Sum P(3) = 3.5e-31
Identities = 14/70 (20%), Positives = 26/70 (37%)
Query: 1846 EDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVM 1905
E + +E G+ G S GG +K D+ + E + P+G + V
Sbjct: 1505 EQKEREALERGETFGASKGGKKNAQKRKRDVTLDDMYHEGEGNFDDA-SAKPSGAATPVS 1563
Query: 1906 DSKECAAEAA 1915
++ +A
Sbjct: 1564 TAENIGTPSA 1573
Score = 40 (19.1 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 761 DSSSQPSGS-TPAQVPSMDLGNVASDTKEVLSENSSSKGG 799
D+S++PSG+ TP ++G ++ T + + +GG
Sbjct: 1550 DASAKPSGAATPVSTAE-NIGTPSASTP--VPKRGRGRGG 1586
Score = 37 (18.1 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 890 SVPVKRHGRKTPTTGEAPRRRGKKQ 914
S PV + GR G A R + K+
Sbjct: 1574 STPVPKRGRGRGGKGTAKRAKTTKE 1598
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 407 (148.3 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 97/211 (45%), Positives = 124/211 (58%)
Query: 6 ENLGSIGNSKGRSV--HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLE 63
++L + N + V N + +LR +HPYL E I H ++ GKL
Sbjct: 298 KDLDAFENEMAKKVKLQNVLSQLRKCVDHPYLFD-GVEPEPFEIGDH----LIEASGKLH 352
Query: 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123
+LD+LL L + HRVL FS MT++LD+++DYL ++ Y Y R+DG G +R I F
Sbjct: 353 LLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFG 412
Query: 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183
QQ P F FL S RAGGVG+NL AADTVI FD+D+NPQ DLQA ARAHRIGQ + V V+R
Sbjct: 413 QQ--PIFTFL-STRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIR 469
Query: 184 FETVQTVEEQVRASAEHKLGVANQSITAGFF 214
TVEE V A KL + N I G F
Sbjct: 470 LIGRDTVEEIVYRKAASKLQLTNTIIEGGHF 500
Score = 44 (20.5 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 1758 NLSDFCQPSSSLAPWEAKIDGSSE---KDPVSSQSVLEGSKETVAEAG 1802
N FC PS P + + + S++ +DP S+ T +AG
Sbjct: 682 NYQSFCLPSEESEPEDGEDESSAQLEYEDPDSTSIRYVSGDVTHPQAG 729
Score = 42 (19.8 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTA---TDGNVSSIPTAPVPDSV 599
+PS +P+ E S L +ST+ G+V+ P A D+V
Sbjct: 688 LPSEESEPEDGEDESSAQLEYEDPDSTSIRYVSGDVTH-PQAGAEDAV 734
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 391 (142.7 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 94/227 (41%), Positives = 129/227 (56%)
Query: 7 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY-LPPIVRLCGKLEML 65
N S G + S++N +M+LR HPY+ E D +P + + K +L
Sbjct: 819 NTSSSGGQRTTSLNNILMQLRKTLAHPYIYSPDIE--DRNLPYELAMRSLEEASCKFLIL 876
Query: 66 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 125
L+PKL HR+L FS + LD++ED+ +K Y R DG +S +R + ID FN
Sbjct: 877 RLLVPKLITRGHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAP 936
Query: 126 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFE 185
+S FLLS RAGGVG+NL +ADTVII D D+NP D+QA ARAHR GQK+ VLV
Sbjct: 937 NSELSCFLLSTRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLT 996
Query: 186 TVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 232
T +VEE++ +A+ KL V + I N+ S +D LES+LR
Sbjct: 997 TRDSVEEKIIQNAQKKL-VLDHLIVESLDQNHNSEKD----LESILR 1038
Score = 65 (27.9 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 1034 ENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQ---AGRIENIANSSPDDKS 1090
+N + T ND S G P+ T++S T+ L + K + + IEN+ + S KS
Sbjct: 1157 DNSDDTDYTVNDRSSPGSPFPIETETISSITDTLSDKQKLKYDSSVNIENLNDESDSQKS 1216
Score = 44 (20.5 bits), Expect = 4.4e-30, Sum P(2) = 4.4e-30
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 918 PSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKEIFSETCSSK 977
P + + A++ K S +KSR+ F K KQ A +N + +E T SS
Sbjct: 1348 PMLRNKEAIYRLK---DSLSKSREPFHIK------KQAMARLNSFLQKKEE---PTVSSS 1395
Query: 978 AKTGDSS 984
AKT + S
Sbjct: 1396 AKTNELS 1402
Score = 40 (19.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 1986 VVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPE----TVPEE 2040
+ ET+ T +K SSV+ E+ E + DV D I+ + T P+E
Sbjct: 1178 IETETISSITDTLSDKQKLKYDSSVNIENLNDESDSQKSADVHFDSILAKSLLATTPKE 1236
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 392 (143.0 bits), Expect = 3.4e-32, P = 3.4e-32
Identities = 101/278 (36%), Positives = 147/278 (52%)
Query: 10 SIGNSKGRSVHNSVMELRNICNHPYLSQ-LHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
S G S S+ N V++LR C+HPYL + E + +H +V+ GKL +LD+L
Sbjct: 332 SSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEE--GEH----LVQASGKLLVLDQL 385
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ--- 125
L +L + HRVL FS MT LD+++D++ ++Y Y RLDG +R A I F+ +
Sbjct: 386 LKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTER 445
Query: 126 --DSPF-----FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
DS F+F++S RAGGVG+NL AADTVI ++ DWNPQVD QA RAHRIGQ
Sbjct: 446 GLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISH 505
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 238
VL + T +VEE + AE KL +++ + + D R + L R +E
Sbjct: 506 VLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEEKEEDGGDLRSLVFGLQRFDPEEI 565
Query: 239 XXXXXXXXXXXXXXXRSESEIDVFESV--DKQRREEEM 274
+E + + ++V DK+ R E+
Sbjct: 566 HNEESDNLKMVEISSLAEKVVAIRQNVEPDKEERRFEI 603
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 392 (143.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 84/171 (49%), Positives = 115/171 (67%)
Query: 9 GSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRL 68
GS G++ G N +MEL+ CNH YL + + + + L ++R GKL +LD+L
Sbjct: 738 GSKGSTSG--FLNIMMELKKCCNHCYLIK-PPDNNEFYNKQEALQHLIRSSGKLILLDKL 794
Query: 69 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128
L +L+ +RVL FS M R+LD++ +YL ++Q+ + RLDG + G R +D FN S
Sbjct: 795 LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDG-SIGELRRQALDHFNAXGSE 853
Query: 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F FLLS RAGG+G+NL +ADTV+IFD+DWNPQ DLQAQARAHRIGQK+ V
Sbjct: 854 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 904
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 409 (149.0 bits), Expect = 4.7e-32, Sum P(3) = 4.7e-32
Identities = 83/164 (50%), Positives = 113/164 (68%)
Query: 52 LPPIVRLC---GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 108
+P ++R GKL LD+LL +LKA DHRVL + MTR++D+ME+YLTF+QY+YLRLDG
Sbjct: 1418 IPSMLRFIADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDG 1477
Query: 109 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 168
+ R ++ ++ Q F+FLLS RAGG+G+NL AADTVI +D+DWNP +D QA
Sbjct: 1478 SSKISQRRDMVTEW-QTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMD 1536
Query: 169 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212
RAHRIGQ++ V V RF T T+EE++ A+ K V I+ G
Sbjct: 1537 RAHRIGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGG 1580
Score = 61 (26.5 bits), Expect = 4.7e-32, Sum P(3) = 4.7e-32
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYL 35
G+ S+ N VM+ R +CNHP L
Sbjct: 1120 GDDTVASIMNLVMQFRKVCNHPDL 1143
Score = 39 (18.8 bits), Expect = 4.7e-32, Sum P(3) = 4.7e-32
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 2016 GPEVEPCVQMDVRGD 2030
G E P QMD++G+
Sbjct: 1579 GGETRPTKQMDLKGN 1593
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 418 (152.2 bits), Expect = 5.0e-32, Sum P(3) = 5.0e-32
Identities = 97/212 (45%), Positives = 126/212 (59%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MK ++ G+ K R + N +M LR NHPYL AE +L V G
Sbjct: 381 MKDIDIINGAGKVEKARLM-NILMHLRKCVNHPYLFD-GAEPGPPFTTDQHL---VDNSG 435
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
K+ +LD+LL K K RVL FS +R+LD++ED+ ++ Y Y RLDG T DR I+
Sbjct: 436 KMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIE 495
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+N DS FIF+L+ RAGG+G+NL AD VII+D+DWNPQ DLQA RAHRIGQK+ V
Sbjct: 496 AYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVR 555
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAG 212
V R T TV+E++ AE KL + N I G
Sbjct: 556 VFRLITENTVDERIIEKAEAKLRLDNIVIQQG 587
Score = 43 (20.2 bits), Expect = 5.0e-32, Sum P(3) = 5.0e-32
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 1977 QLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQM 2025
QL + G +T EEE L CE +G D E+ E+ V+M
Sbjct: 890 QLRISYGTNK-GKTYTEEEDRFLVCETHRLGH--DKENVFEELRQSVRM 935
Score = 37 (18.1 bits), Expect = 5.0e-32, Sum P(3) = 5.0e-32
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 1352 EIPSMEAEVAKCPSDAIVNN 1371
++P EAE + ++NN
Sbjct: 760 DVPPKEAEKRQAEEQKLINN 779
>UNIPROTKB|J9P9W7 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00271 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 GeneTree:ENSGT00530000063427 EMBL:AAEX03004381
EMBL:AAEX03004385 EMBL:AAEX03004386 EMBL:AAEX03004382
EMBL:AAEX03004383 EMBL:AAEX03004384 EMBL:AAEX03004387
EMBL:AAEX03004388 Ensembl:ENSCAFT00000045283 OMA:PATANNS
Uniprot:J9P9W7
Length = 1470
Score = 398 (145.2 bits), Expect = 8.2e-32, Sum P(4) = 8.2e-32
Identities = 84/172 (48%), Positives = 113/172 (65%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL
Sbjct: 285 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 344
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
+++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RD
Sbjct: 345 MERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 403
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
V + R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 404 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 452
Score = 63 (27.2 bits), Expect = 5.4e-31, Sum P(4) = 5.4e-31
Identities = 25/106 (23%), Positives = 44/106 (41%)
Query: 2065 ASSIPRG-ESKGPD-AEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVG 2122
A S+P G E + P+ AE + G + + + GL L S +E ++ +
Sbjct: 857 ADSVPNGQEQEVPEPAEGTILTVLPDGEEVPSCLSESNGLDLPLSAASDELLQEPLEADK 916
Query: 2123 SEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPA 2168
S +E + + P + P VS++ A + PE + PA
Sbjct: 917 SSEELVEAQTPTSSPEKPQELVSAEVAAPSTSSSATSSPE-SPSPA 961
Score = 63 (27.2 bits), Expect = 2.2e-30, Sum P(4) = 2.2e-30
Identities = 38/141 (26%), Positives = 60/141 (42%)
Query: 489 VMVGIAPSSQPTTAFVPVAPG-SQSASACPSTPMQ--PK-GRGRRIQ---SGEQVPRRRG 541
V V I P S+ + AP + A + P+ Q P+ G + GE+VP
Sbjct: 832 VAVEILPISEKNLSLASSAPSPTLEADSVPNGQEQEVPEPAEGTILTVLPDGEEVPSCLS 891
Query: 542 KKIGLVLP--AASDDI-PSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS 598
+ GL LP AASD++ P K++E+ E+ P+ + VS+ AP S
Sbjct: 892 ESNGLDLPLSAASDELLQEPLEADKSSEE-LVEAQTPTSSPEKPQE-LVSAEVAAPSTSS 949
Query: 599 VSPSAVKGQSGTIDPSSAVAA 619
+ S+ + S P +A
Sbjct: 950 SATSSPESPSPARPPRRRTSA 970
Score = 63 (27.2 bits), Expect = 3.1e-30, Sum P(5) = 3.1e-30
Identities = 44/206 (21%), Positives = 78/206 (37%)
Query: 1706 LGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKG-SIGDQMDCCQSGV--VVPENLSDF 1762
LGLPS+ + + L + + L ++ + D S + V P++L
Sbjct: 773 LGLPSVPISPPVTNLPLGLGPETELCAQALASTESLELADMASSETSPLTLVPPKDLLPV 832
Query: 1763 CQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMP--EKLPE---- 1816
++ + S+ + + SV G ++ V E + ++++P E++P
Sbjct: 833 AVEILPISEKNLSLASSAPSPTLEADSVPNGQEQEVPEPAEGTILTVLPDGEEVPSCLSE 892
Query: 1817 --HLDIPASLATPEEKTEGSEKDPDSS--FAAQ------EDPKESVVEAGDQMGVSLGGA 1866
LD+P S A+ E E E D S AQ E P+E V + + S +
Sbjct: 893 SNGLDLPLSAASDELLQEPLEADKSSEELVEAQTPTSSPEKPQELV--SAEVAAPSTSSS 950
Query: 1867 TVMEKSSEDLATPPLSLANEEEMIEG 1892
S A PP + + I G
Sbjct: 951 ATSSPESPSPARPPRRRTSADVEIRG 976
Score = 62 (26.9 bits), Expect = 8.2e-32, Sum P(4) = 8.2e-32
Identities = 43/192 (22%), Positives = 76/192 (39%)
Query: 1031 SPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQA---GRIENIANSSPD 1087
S +P L K+ V + P+S L+ + A P +A + G+ + + + +
Sbjct: 815 SSETSPLTLVPPKDLLPVAVEILPISEKNLSLASSAPSPTLEADSVPNGQEQEVPEPA-E 873
Query: 1088 DKSLPMVPNLETAPP------GFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAF 1141
L ++P+ E P G D+P+ +++ + K E V ++ P S+
Sbjct: 874 GTILTVLPDGEEVPSCLSESNGLDLPLSAASDELLQEPLEADKSSEELVEAQTPTSSPEK 933
Query: 1142 EQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAP----GFDIPIE-KGVEQSGTEIDAKV 1196
QE V S+ V SS + +P+ P D+ I +G + G KV
Sbjct: 934 PQELV---SAEVAAPSTSSSATSSPESPSPARPPRRRTSADVEIRGQGAGRPGQPPGPKV 990
Query: 1197 KWKNTPLPGEAI 1208
K LPG +
Sbjct: 991 LRK---LPGRLV 999
Score = 54 (24.1 bits), Expect = 5.4e-31, Sum P(4) = 5.4e-31
Identities = 38/174 (21%), Positives = 65/174 (37%)
Query: 1298 TPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSAS-PERSGPQNSAVGFCDKSEIPSM 1356
TP + +P + T ST S +G + P + P GP+ C ++ +
Sbjct: 750 TPPPAHTPPPTQTSLSTPSSPLLLGLPSVPISPPVTNLPLGLGPETE---LCAQALASTE 806
Query: 1357 EAEVAKCPSDAIVNNLLETPLDIKSIGGPIVSMKAADVADADHPLETAVELGSPVNSCTV 1416
E+A S L P D+ + I+ + +++ A +E S N
Sbjct: 807 SLELADMASSETSPLTLVPPKDLLPVAVEILPISEKNLSLASSAPSPTLEADSVPNGQEQ 866
Query: 1417 E-PXXXXXXXXXXXXXXXXLDNPLS-IEGIGLSVSAKTDDVADHPVEPPGCDKS 1468
E P + + LS G+ L +SA +D++ P+E DKS
Sbjct: 867 EVPEPAEGTILTVLPDGEEVPSCLSESNGLDLPLSAASDELLQEPLE---ADKS 917
Score = 54 (24.1 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 26/87 (29%), Positives = 34/87 (39%)
Query: 508 PGSQSASACPSTPMQPKGRGRRIQSG--------EQVPRRR-GKKIGLVLPAASDDIPSP 558
PG + P + PK R R++ G E+VPR+R G +G A P
Sbjct: 1341 PGGLELTP-PVVSLAPKLRSTRLRPGSLVPPLETEKVPRKRAGAPVGGGPGLAKRGRLQP 1399
Query: 559 GPDPKTNEQPQSESLNPSGGESTATDG 585
P P E ES + GE DG
Sbjct: 1400 -PSPLGPEGSVEESEAEASGEEEEVDG 1425
Score = 49 (22.3 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 25/107 (23%), Positives = 39/107 (36%)
Query: 505 PVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKT 564
P G S+ +P R R++ + R R + +V+ DD+ P
Sbjct: 1284 PQGQGESEGSSSDEDGSRPLTRLARLRLEAEGMRGRKSEGSMVVAVIQDDLDLADSGPGG 1343
Query: 565 NE-QPQSESLNPSGGESTATDGN-VSSIPTAPVPDSVSPSAVKGQSG 609
E P SL P + G+ V + T VP + + V G G
Sbjct: 1344 LELTPPVVSLAPKLRSTRLRPGSLVPPLETEKVPRKRAGAPVGGGPG 1390
Score = 48 (22.0 bits), Expect = 8.2e-32, Sum P(4) = 8.2e-32
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEE 822
+PSGS+ P + VAS +L + I A + KA + + F E
Sbjct: 459 EPSGSSVPSAPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNE 516
Score = 47 (21.6 bits), Expect = 8.2e-32, Sum P(4) = 8.2e-32
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 1764 QPSSSLAPW----EAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLD 1819
QP S L P E++ + S E++ V + A +Q D I+ P HL
Sbjct: 1398 QPPSPLGPEGSVEESEAEASGEEEEVDGTPRRRPGPRRLGGATNQGDQRILRSSAPPHLA 1457
Query: 1820 IP 1821
P
Sbjct: 1458 GP 1459
Score = 47 (21.6 bits), Expect = 4.2e-31, Sum P(2) = 4.2e-31
Identities = 21/85 (24%), Positives = 35/85 (41%)
Query: 2183 KEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLV--IAEDKTENEI 2240
+EP GSSV +E E A + +++ A+ E + + +AE NE
Sbjct: 458 EEPSGSSVPSAPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNEN 517
Query: 2241 EEDPV-----VNSVAVEESKGSEAD 2260
+ P N VE+ + S A+
Sbjct: 518 DGFPTGEGEEANRPGVEDEEMSRAE 542
Score = 47 (21.6 bits), Expect = 2.8e-30, Sum P(4) = 2.8e-30
Identities = 47/187 (25%), Positives = 76/187 (40%)
Query: 1119 NNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADL-SSDDKTCSVTPAMETAP-G 1176
N P G ET + ++A ASTE+ E LAD+ SS+ ++ P + P
Sbjct: 786 NLPLGLGPETELCAQALASTESLE------------LADMASSETSPLTLVPPKDLLPVA 833
Query: 1177 FDI-PI-EKGVEQSGT------EIDA--KVKWKNTPLPGEAIVA-----GIEVFKPENKT 1221
+I PI EK + + + E D+ + + P P E + G EV P +
Sbjct: 834 VEILPISEKNLSLASSAPSPTLEADSVPNGQEQEVPEPAEGTILTVLPDGEEV--PSCLS 891
Query: 1222 DGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEG 1281
+ + ++ D L++E + ++V P TS S + P E L+
Sbjct: 892 ESNGLDLPLSAASDE-LLQEPLEADKSSEELVEAQTP--TS--SPEKPQE--LVSAEVAA 944
Query: 1282 PSVSMKA 1288
PS S A
Sbjct: 945 PSTSSSA 951
Score = 47 (21.6 bits), Expect = 9.7e-29, Sum P(4) = 9.7e-29
Identities = 37/177 (20%), Positives = 56/177 (31%)
Query: 442 SPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQ--P 499
+P+PV +PAP M S LP P + P
Sbjct: 699 APIPVPIPAPIPISAPNPITMLPVHILPSPPLPPSQIPPSCSSACTPPPACTPPPAHTPP 758
Query: 500 TTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPG 559
T P S PS P+ P + G + + + D+ S
Sbjct: 759 PTQTSLSTPSSPLLLGLPSVPISPPVTNLPLGLGPET-ELCAQALASTESLELADMASSE 817
Query: 560 PDPKTNEQPQSESLNPSGGESTA-TDGNVSSIPTAPVPDSVSPSAVKGQSGTI-DPS 614
P T P+ L P E ++ N+S +AP P + S GQ + +P+
Sbjct: 818 TSPLTLVPPKD--LLPVAVEILPISEKNLSLASSAPSPTLEADSVPNGQEQEVPEPA 872
Score = 46 (21.3 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVP 596
I SP + P++ L G S+ DGN+ S T P+P
Sbjct: 1170 ILSPVEKRRRGRPPKARDLPLPGTISSPGDGNLES-RTQPLP 1210
Score = 46 (21.3 bits), Expect = 1.7e-28, Sum P(5) = 1.7e-28
Identities = 29/147 (19%), Positives = 62/147 (42%)
Query: 1779 SSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLP---EHLDIPASLATPEEKTEGSE 1835
S+E ++ + E S T+ D + +++ E LP ++L + +S +P T ++
Sbjct: 804 STESLELADMASSETSPLTLVPPKDLLPVAV--EILPISEKNLSLASSAPSP---TLEAD 858
Query: 1836 KDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEEEMIEGFDN 1895
P+ +P E + G + + E + DL PLS A++E + E +
Sbjct: 859 SVPNGQEQEVPEPAEGTILTVLPDGEEVPSC-LSESNGLDL---PLSAASDELLQEPLEA 914
Query: 1896 DPTGISMAVMDSKECAAEAADQMCVSE 1922
D + + + + E ++ +E
Sbjct: 915 DKSSEELVEAQTPTSSPEKPQELVSAE 941
Score = 45 (20.9 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 22/77 (28%), Positives = 28/77 (36%)
Query: 495 PSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQ-SGEQVPRRRG---KKIGLVLPA 550
PS+ PT P + G G + + V RRRG KK A
Sbjct: 1058 PSTLPTPTQQPFIARRRIELGVTGGGSPENGEGALLAITPPAVKRRRGRPPKKNRSPADA 1117
Query: 551 AS--DDIPSPGPDPKTN 565
D++PS P KTN
Sbjct: 1118 GRGVDEVPSSAPKGKTN 1134
Score = 43 (20.2 bits), Expect = 2.2e-30, Sum P(4) = 2.2e-30
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 891 VPVKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGS 924
VP KR G G +RG+ Q P P+GS
Sbjct: 1376 VPRKRAGAPVGG-GPGLAKRGRLQPPSPLGPEGS 1408
Score = 40 (19.1 bits), Expect = 2.0e-29, Sum P(5) = 2.0e-29
Identities = 9/60 (15%), Positives = 27/60 (45%)
Query: 708 KQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATH-DSSSQP 766
+++ ++ + ++ ++ C D+ Q AEQ + + N+ P + +++P
Sbjct: 472 EEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENDGFPTGEGEEANRP 531
Score = 39 (18.8 bits), Expect = 3.1e-30, Sum P(5) = 3.1e-30
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 2066 SSIPRGESKGPDAE--ANNIIDAEGG-GNMRQTVPQDLGLP--LSSSDVEEEK 2113
SS P+G++ G D A +I AE G PQ + P + S VE+ +
Sbjct: 1126 SSAPKGKTNGADPVPGAETLIVAEPVLGPQLSLGPQPIHRPEPIILSPVEKRR 1178
Score = 38 (18.4 bits), Expect = 5.4e-31, Sum P(4) = 5.4e-31
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 1621 VPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDE 1662
+P+ + E G D++S GS + + G R+ E
Sbjct: 599 LPQEEEEGPGAGDEVSCGTGGGSHRRSKKAKAPERPGTRVSE 640
Score = 37 (18.1 bits), Expect = 2.2e-30, Sum P(4) = 2.2e-30
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 2069 PRGESKGPDAEANNIIDAEGGGNMRQTVPQDLGLPLSSSD 2108
P G + +AEA+ + G R+ P+ LG + D
Sbjct: 1405 PEGSVEESEAEASGEEEEVDGTPRRRPGPRRLGGATNQGD 1444
Score = 37 (18.1 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 290 PLPPLPSRL 298
PLPPLP L
Sbjct: 1214 PLPPLPPLL 1222
Score = 37 (18.1 bits), Expect = 1.0e-27, Sum P(4) = 1.0e-27
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 597 DSVSPSAVKGQSGTIDP 613
D V SA KG++ DP
Sbjct: 1122 DEVPSSAPKGKTNGADP 1138
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 398 (145.2 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 84/172 (48%), Positives = 113/172 (65%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL
Sbjct: 2042 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2101
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
+++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RD
Sbjct: 2102 MERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2160
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
V + R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 2161 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 2209
Score = 65 (27.9 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 1779 SSEKDP-VSSQSVLEGSKETVAEAGDQMDISIMP--EKLP------EHLDIPASLATPEE 1829
SS P +++ SV G ++ V E + +S++P E++P L++P S A+ E
Sbjct: 2605 SSAPSPTLAAGSVPNGQEQEVPEPAEATILSVLPDGEEVPACLSESSKLELPPSAASDEL 2664
Query: 1830 KTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATP 1879
E E D +S + S E ++ VS A SS +TP
Sbjct: 2665 LQESLEADKNSEELVEAQTPTSTPEKPQEL-VSAEVAAPSTSSSAT-STP 2712
Score = 63 (27.2 bits), Expect = 1.9e-30, Sum P(4) = 1.9e-30
Identities = 50/238 (21%), Positives = 72/238 (30%)
Query: 370 ESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEXXXXXXXXXXXXXXXXXXXXS---KEVT 426
ES ++ K EE +E PT + S E + +
Sbjct: 2667 ESLEADKNSEELVEAQTPTSTPEKPQELVSAEVAAPSTSSSATSTPEGPSPARPPRRRTS 2726
Query: 427 PPSKXXXXXXXXADKSPVPVVL---PAPSGTVKVEKDAMTG---QSTSASASLPXXXXXX 480
+ + P P VL P TV EK+ + Q +AS +P
Sbjct: 2727 ADVEIRGQGAGRPGQPPGPKVLRKLPGRLVTVVEEKELVRRRRQQRGTASTLVPGVSETG 2786
Query: 481 XXXXXAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQ---SGEQVP 537
V SS PT+ AP S P+ QP RRI+ +G P
Sbjct: 2787 ASPGSPSTRSVSGPESSPPTSGPCEAAP----PSTLPTPTQQPFIARRRIELGVTGGGSP 2842
Query: 538 RR-RGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAP 594
G + + PA G PK N P S+ + G + + P
Sbjct: 2843 ENGEGALLAITPPAVKR---RRGRPPKKNRSPADAGRGVDEAPSSTSKGKTNGADSGP 2897
Score = 61 (26.5 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 18 SVHNSVMELRNICNHPYL 35
SV N +M+LR +CNHP L
Sbjct: 896 SVINILMQLRKVCNHPNL 913
Score = 61 (26.5 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 2111 EEKIEGFSKPVGSEKESIASAVPLDESKGPDA--EVSSQTAIEGGG 2154
EE++E K + KE + +P +E +GP A EVS T GGG
Sbjct: 2336 EEQVEAARKDLDQAKEEVFR-LPQEEEEGPGAGDEVSCGTG--GGG 2378
Score = 59 (25.8 bits), Expect = 5.8e-31, Sum P(5) = 5.8e-31
Identities = 24/107 (22%), Positives = 45/107 (42%)
Query: 2064 SASSIPRG-ESKGPD-AEANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPV 2121
+A S+P G E + P+ AEA + G + + + L L S +E ++ +
Sbjct: 2613 AAGSVPNGQEQEVPEPAEATILSVLPDGEEVPACLSESSKLELPPSAASDELLQESLEAD 2672
Query: 2122 GSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPA 2168
+ +E + + P + P VS++ A + PE GP+
Sbjct: 2673 KNSEELVEAQTPTSTPEKPQELVSAEVAAPSTSSSATSTPE---GPS 2716
Score = 53 (23.7 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 23/77 (29%), Positives = 31/77 (40%)
Query: 508 PGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQ 567
PG + P + PK R R++ G VP +K+ A PG ++ Q
Sbjct: 3101 PGGLELTP-PVVSLAPKLRSTRLRPGSLVPPLETEKVPRKRAGAPAG-GGPGLAKRSRLQ 3158
Query: 568 PQSESLNPSGG--ESTA 582
P S L P G ES A
Sbjct: 3159 PPSP-LGPEGSVEESEA 3174
Score = 50 (22.7 bits), Expect = 5.8e-31, Sum P(5) = 5.8e-31
Identities = 36/140 (25%), Positives = 56/140 (40%)
Query: 1011 SDDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPE 1070
S C+ P TPPP P LT + +R PVS + + L PE
Sbjct: 2495 SCSSACTPPPAC-TPPPAHTPPPAQTSLLTPSC-PLLLRLPSVPVSP-PVTNLPLGLGPE 2551
Query: 1071 NK--AQA-GRIENI--ANSSPDDKS-LPMVPNLETAPPGFDI-PI-EKHNEQSRNQNNPE 1122
+ AQA E++ A+ + + S + VP + P +I P+ EK+ + + +P
Sbjct: 2552 AELCAQAVASTESLELADMASSETSPVTFVPPKDLLPVAVEILPMSEKNLSLASSAPSPT 2611
Query: 1123 VKGEETP--VSSEAPASTEA 1140
+ P E P EA
Sbjct: 2612 LAAGSVPNGQEQEVPEPAEA 2631
Score = 49 (22.3 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 41/179 (22%), Positives = 67/179 (37%)
Query: 1119 NNPEVKGEETPVSSEAPASTEAFEQEKVTN--TS--SFVNLADLSSDDKTCSVTPAMETA 1174
N P G E + ++A ASTE+ E + + TS +FV DL + P E
Sbjct: 2543 NLPLGLGPEAELCAQAVASTESLELADMASSETSPVTFVPPKDLLP--VAVEILPMSEKN 2600
Query: 1175 PGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGI-----EVFKPENKTDGDSVEKL 1229
+G+ + + + P P EA + + EV P ++ +E
Sbjct: 2601 LSLASSAPSPTLAAGSVPNGQEQ--EVPEPAEATILSVLPDGEEV--PACLSESSKLELP 2656
Query: 1230 EDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKA 1288
D L++E + + ++V P +T E P E L+ PS S A
Sbjct: 2657 PSAASDE-LLQESLEADKNSEELVEAQTPTSTPEK----PQE--LVSAEVAAPSTSSSA 2708
Score = 48 (22.0 bits), Expect = 6.4e-28, Sum P(5) = 6.4e-28
Identities = 34/139 (24%), Positives = 53/139 (38%)
Query: 495 PSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSG-EQVPRRRGKKIGLVLPAASD 553
P+ P A P P +Q++ PS P+ + + +P G + L A +
Sbjct: 2504 PACTPPPAHTP--PPAQTSLLTPSCPLLLRLPSVPVSPPVTNLPLGLGPEAELCAQAVAS 2561
Query: 554 -------DIPSPGPDPKTNEQPQSESLNPSGGESTA-TDGNVSSIPTAPVPDSVSPSAVK 605
D+ S P T P+ L P E ++ N+S +AP P + S
Sbjct: 2562 TESLELADMASSETSPVTFVPPKD--LLPVAVEILPMSEKNLSLASSAPSPTLAAGSVPN 2619
Query: 606 GQSGTIDPSSAVAALNSEL 624
GQ + P A A + S L
Sbjct: 2620 GQEQEV-PEPAEATILSVL 2637
Score = 47 (21.6 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEE 822
+PSGS+ P + VAS +L + I A + KA + + F E
Sbjct: 2216 EPSGSSVPSAPEDEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNE 2273
Score = 47 (21.6 bits), Expect = 6.4e-28, Sum P(5) = 6.4e-28
Identities = 31/125 (24%), Positives = 54/125 (43%)
Query: 655 TQSGGVTPRRRGKRQALGSPPISDV-SAGPESKSNLQSENNSGGLRLSKSVSMGK--QDA 711
T + G P G+ Q + P + + S P+ + + S L L S + + Q++
Sbjct: 2611 TLAAGSVPN--GQEQEVPEPAEATILSVLPDGEEVPACLSESSKLELPPSAASDELLQES 2668
Query: 712 LSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSS-SQPSGST 770
L + N ++ TS P+ KP E +V + + P+T S+ S P G +
Sbjct: 2669 LEAD-KNSEELVEAQTPTST----PE-KPQE----LVSAE--VAAPSTSSSATSTPEGPS 2716
Query: 771 PAQVP 775
PA+ P
Sbjct: 2717 PARPP 2721
Score = 46 (21.3 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 21/80 (26%), Positives = 30/80 (37%)
Query: 439 ADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQ 498
++ SPV V P V VE M+ ++ S ++S P Q V P
Sbjct: 2573 SETSPVTFVPPKDLLPVAVEILPMSEKNLSLASSAPSPTLAAGSVPNGQEQEV---PEPA 2629
Query: 499 PTTAFVPVAPGSQSASACPS 518
T + V P + AC S
Sbjct: 2630 EAT-ILSVLPDGEEVPACLS 2648
Score = 43 (20.2 bits), Expect = 1.5e-30, Sum P(5) = 1.5e-30
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 708 KQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPA 758
+++ ++ + ++ ++ C D+ Q AEQ + + N+ PA
Sbjct: 2229 EEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENDGFPA 2279
Score = 43 (20.2 bits), Expect = 2.1e-29, Sum P(4) = 2.1e-29
Identities = 35/155 (22%), Positives = 60/155 (38%)
Query: 1059 TLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQ 1118
TLA+ + E + I + PD + +P + E++ ++P +++ +
Sbjct: 2611 TLAAGSVPNGQEQEVPEPAEATILSVLPDGEEVPACLS-ESSK--LELPPSAASDELLQE 2667
Query: 1119 NNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPAMETAP--- 1175
+ K E V ++ P ST QE V S+ V SS + P+ P
Sbjct: 2668 SLEADKNSEELVEAQTPTSTPEKPQELV---SAEVAAPSTSSSATSTPEGPSPARPPRRR 2724
Query: 1176 -GFDIPIE-KGVEQSGTEIDAKVKWKNTPLPGEAI 1208
D+ I +G + G KV K LPG +
Sbjct: 2725 TSADVEIRGQGAGRPGQPPGPKVLRK---LPGRLV 2756
Score = 42 (19.8 bits), Expect = 1.9e-30, Sum P(5) = 1.9e-30
Identities = 22/82 (26%), Positives = 31/82 (37%)
Query: 525 GRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTN-EQPQSESLNPSGGESTAT 583
G G R + P R G ++ L A + P T+ +S S P S A
Sbjct: 2376 GGGHRRSKKAKAPERPGTRVSERLRGARAETQGANHTPVTSTHHTRSTSTPPRC--SPAR 2433
Query: 584 DGNVSSIPTA-PVPDSVSPSAV 604
D P P P S +P+A+
Sbjct: 2434 DRVPRPAPRPRPTPAS-APAAI 2454
Score = 42 (19.8 bits), Expect = 5.2e-30, Sum P(3) = 5.2e-30
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 2183 KEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE 2220
+EP GSSV E E A + +++ A+ E
Sbjct: 2215 EEPSGSSVPSAPEDEEETVASKQTHILEQALCRAEDEE 2252
Score = 42 (19.8 bits), Expect = 2.6e-29, Sum P(4) = 2.6e-29
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 2068 IPRGESKGPDAEANNIIDAEGGGNMRQT 2095
+P+ E +GP A + + GGG R++
Sbjct: 2356 LPQEEEEGPGA-GDEVSCGTGGGGHRRS 2382
Score = 41 (19.5 bits), Expect = 6.4e-28, Sum P(5) = 6.4e-28
Identities = 29/136 (21%), Positives = 47/136 (34%)
Query: 657 SGGVTPRR-RGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQE 715
+GG +P G A+ P + P K+ ++ G S S GK +
Sbjct: 2837 TGGGSPENGEGALLAITPPAVKRRRGRPPKKNRSPADAGRGVDEAPSSTSKGKTNGADSG 2896
Query: 716 LSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINL-PATHDSSSQPSGSTPAQV 774
+ + V + GP Q Q + +PI L P +P + +
Sbjct: 2897 PGAETLIVAEPVLAPQLIPGP-QPLGPQPIH---RPEPIILSPVEKRRRGRPPKARDLPI 2952
Query: 775 P---SMDLGNVASDTK 787
P S GN+ S T+
Sbjct: 2953 PGTISSGDGNIESRTQ 2968
Score = 39 (18.8 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 21/95 (22%), Positives = 38/95 (40%)
Query: 1578 PSNALLSSSKDIIAESAKADVVLDEHGKVQLLPGADNPE--GGVIVPEHKSENMGEKDDI 1635
P+ A + S ++ + + L E K++L P A + E + + SE + E
Sbjct: 2628 PAEATILS---VLPDGEEVPACLSESSKLELPPSAASDELLQESLEADKNSEELVEAQTP 2684
Query: 1636 SSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSP 1670
+S LV + A+ + P+ G SP
Sbjct: 2685 TSTPEKPQELVSAEVAAPSTSSSATSTPE--GPSP 2717
Score = 38 (18.4 bits), Expect = 4.7e-30, Sum P(5) = 4.7e-30
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 551 ASDDIPSPGPDPKTNEQ------PQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSA 603
A D +P P P P+ P + S +T ++ +P +P PSA
Sbjct: 2432 ARDRVPRPAPRPRPTPASAPAAIPAPIPVPVSAPIPISTPNPITMLPVHILPSPPLPSA 2490
Score = 37 (18.1 bits), Expect = 1.9e-30, Sum P(4) = 1.9e-30
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 1026 PPGFNSPNENPGELTGTKNDASV 1048
PP N P+ P +L D+SV
Sbjct: 3011 PPK-NPPSPRPSQLPVLDRDSSV 3032
Score = 37 (18.1 bits), Expect = 8.9e-28, Sum P(4) = 8.9e-28
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 290 PLPPLPSRL 298
PLPPLP L
Sbjct: 2975 PLPPLPPLL 2983
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 389 (142.0 bits), Expect = 1.3e-31, Sum P(7) = 1.3e-31
Identities = 83/171 (48%), Positives = 112/171 (65%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL+
Sbjct: 2031 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2090
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RDV
Sbjct: 2091 ERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2149
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
+ R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 2150 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 2197
Score = 82 (33.9 bits), Expect = 1.7e-30, Sum P(8) = 1.7e-30
Identities = 37/161 (22%), Positives = 59/161 (36%)
Query: 448 LPAPSGTVKVEKDAMTGQSTSASAS--LPXXXXXXXXXXXAQ-HVMVGIAPSSQPTTAFV 504
LP TV EK+ + + A+AS +P H M G SS P++
Sbjct: 2711 LPGRLVTVVEEKELVKRRRHRATASTLVPGVSEVSASPRSPSIHSMSG-PESSPPSSGPC 2769
Query: 505 PVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKT 564
AP S ++ T + + I G G K+ + PA G PK
Sbjct: 2770 EAAPTSSLSTPTQHTFIACRHNELGITGGGSPENGEGAKLAITPPAVKR---RRGRPPKK 2826
Query: 565 NEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVK 605
N P S+ + G + + P P++V+ +A +
Sbjct: 2827 NRSPADAGRGVDEAPSSISKGKTNGVDPIPGPETVTATAAE 2867
Score = 71 (30.1 bits), Expect = 1.3e-31, Sum P(7) = 1.3e-31
Identities = 33/137 (24%), Positives = 53/137 (38%)
Query: 657 SGGVTPRR-RGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQE 715
+GG +P G + A+ P + P K+ ++ G S+S GK
Sbjct: 2796 TGGGSPENGEGAKLAITPPAVKRRRGRPPKKNRSPADAGRGVDEAPSSISKGK------- 2848
Query: 716 LSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINL-PATHDSSSQPSGST---- 770
+N + P +A A PD KP + + V +PI L P +P +
Sbjct: 2849 -TNGVDPIPGPETVTATAAEPDLKPQPLAPQPVHKPEPIILSPVEKRRRGRPPKARDLPI 2907
Query: 771 PAQVPSMDLGNVASDTK 787
P + S GN+ S T+
Sbjct: 2908 PGTISSPGDGNLESRTQ 2924
Score = 64 (27.6 bits), Expect = 1.3e-31, Sum P(7) = 1.3e-31
Identities = 30/103 (29%), Positives = 40/103 (38%)
Query: 495 PSSQPTTAFVPV-APGSQSASACPSTPMQPKGRGRRI---QSGEQVPRRRGKKIGLVL-P 549
P + T+A V + GS P + K GR + + E V RRR + L P
Sbjct: 2680 PPRRRTSADVEIRGQGSGRTGQPPGPKVLRKLPGRLVTVVEEKELVKRRRHRATASTLVP 2739
Query: 550 AASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPT 592
S+ SP P + ES PS G A + S PT
Sbjct: 2740 GVSEVSASPR-SPSIHSMSGPESSPPSSGPCEAAPTSSLSTPT 2781
Score = 61 (26.5 bits), Expect = 1.3e-31, Sum P(7) = 1.3e-31
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 18 SVHNSVMELRNICNHPYL 35
SV N +M+LR +CNHP L
Sbjct: 899 SVINILMQLRKVCNHPNL 916
Score = 58 (25.5 bits), Expect = 1.3e-31, Sum P(7) = 1.3e-31
Identities = 21/87 (24%), Positives = 31/87 (35%)
Query: 1018 VTPTVETPPPGFNSPNENPGELTGTKNDASV--RGDHTPVSGHTLASKTEALKPENKAQA 1075
+TP V + P F S PG L + + PV +A + P
Sbjct: 3059 LTPPVVSLTPKFRSTRLRPGSLVPPLETEKMPRKRSGAPVGSSGMAKRGRLQPPSPLGPE 3118
Query: 1076 GRIENI-ANSSPDDKSLPMVPNLETAP 1101
G +E A +S D++ P T P
Sbjct: 3119 GSVEESEAEASGDEEEGDGTPRRRTGP 3145
Score = 56 (24.8 bits), Expect = 6.0e-29, Sum P(5) = 6.0e-29
Identities = 41/185 (22%), Positives = 76/185 (41%)
Query: 1570 EIFNMEGGPSNALLSSSKDIIAESAKADVVLDE-HGKVQLLPGADNPEGGVIVPEHKSEN 1628
E+F+M P SS + E + V + H Q L A++ E + K+E
Sbjct: 2196 ELFDM---PLEEPPGSSVSSVPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQ 2252
Query: 1629 MGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHM 1688
+ E + + F + ++AS G DE + + ++ +V++L M
Sbjct: 2253 VAELAEFNENEGFPAGE--GEEASRPGPGAE-DEEM--SRAEQEIAALVEQLTPIERYAM 2307
Query: 1689 GVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDC 1748
+ + V RE+ ++ + +A K+ +D + K+ L E+ GD+M C
Sbjct: 2308 KFLEASLEEVSREELKQAE-EQVEAARKD--LDQA--KEEVFRLPQEEEEGPGAGDEMSC 2362
Query: 1749 CQSGV 1753
SGV
Sbjct: 2363 ATSGV 2367
Score = 54 (24.1 bits), Expect = 6.4e-31, Sum P(7) = 6.4e-31
Identities = 47/209 (22%), Positives = 73/209 (34%)
Query: 489 VMVGIAPSSQPTTAFVPVAPGSQSASACPS-----TPMQPKGRGRRI-QSGEQVPRRRGK 542
V V + P S+ +P + A + P P +G R + G ++ +
Sbjct: 2551 VAVDVLPESEKNLPLIPAPSSTLEAESIPDDQEQEVPGSVEGTNRTLLPGGGELTVSLSE 2610
Query: 543 KIGLVLP--AASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVS 600
GL LP AASD+ P + N + E P + V + TAP S S
Sbjct: 2611 SNGLELPPSAASDE-PLQLLETHRNLEDTREVQTPVSNSEKPQE-LVRAEVTAP---STS 2665
Query: 601 PSAVKGQSGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQS-RKTQSGG 659
SA G + P+ S + + + G+ +
Sbjct: 2666 SSATSSPEGPL-PARPPRRRTSA-DVEIRGQGSGRTGQPPGPKVLRKLPGRLVTVVEEKE 2723
Query: 660 VTPRRRGKRQALGSPP-ISDVSAGPESKS 687
+ RRR + A P +S+VSA P S S
Sbjct: 2724 LVKRRRHRATASTLVPGVSEVSASPRSPS 2752
Score = 54 (24.1 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 2183 KEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLV--IAEDKTENEI 2240
+EP GSSVS + +E E A + +++ A+ E + + +AE NE
Sbjct: 2203 EEPPGSSVSSVPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNEN 2262
Query: 2241 EEDP 2244
E P
Sbjct: 2263 EGFP 2266
Score = 53 (23.7 bits), Expect = 6.8e-29, Sum P(6) = 6.8e-29
Identities = 19/95 (20%), Positives = 40/95 (42%)
Query: 1807 ISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGA 1866
+ ++PE IPA +T E ++ +++ + + E +++ G ++ VSL +
Sbjct: 2553 VDVLPESEKNLPLIPAPSSTLEAESIPDDQEQEVP-GSVEGTNRTLLPGGGELTVSLSES 2611
Query: 1867 TVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGIS 1901
+E + PL L +E T +S
Sbjct: 2612 NGLELPPSAASDEPLQLLETHRNLEDTREVQTPVS 2646
Score = 53 (23.7 bits), Expect = 4.0e-27, Sum P(5) = 4.0e-27
Identities = 22/77 (28%), Positives = 33/77 (42%)
Query: 517 PSTPMQPKGRGRRIQSG--------EQVPRRR-GKKIGLVLPAASDDI--PSP-GPDPKT 564
P + PK R R++ G E++PR+R G +G A + PSP GP+
Sbjct: 3062 PVVSLTPKFRSTRLRPGSLVPPLETEKMPRKRSGAPVGSSGMAKRGRLQPPSPLGPEGSV 3121
Query: 565 NEQPQSESLNPSGGEST 581
E S + G+ T
Sbjct: 3122 EESEAEASGDEEEGDGT 3138
Score = 52 (23.4 bits), Expect = 6.0e-29, Sum P(5) = 6.0e-29
Identities = 36/163 (22%), Positives = 63/163 (38%)
Query: 2068 IPRGESKGPDAEANNIIDAEGGGNMRQT----VPQDLGLPLSSS-DVEEEKIEGFSK-PV 2121
+P+ E +GP A + + A G + R++ P+ LG +S + +G + PV
Sbjct: 2346 LPQEEEEGPGA-GDEMSCATSGVSHRRSKKVKAPERLGTRVSERLRGARAETQGANHTPV 2404
Query: 2122 GSEKESIASAVP-----LDES---KGPDAEVSSQTAIE-GGGVVSIPVPEEADGPASFLA 2172
S ++ + VP + E P A V+S A + + P+P A P + L
Sbjct: 2405 TSSHQTCNTFVPPRCSPVRERIPRPRPAASVASAPASAITSSLATAPIPISAPNPVTILP 2464
Query: 2173 AEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVAL 2215
P+ + S + S P P+ + G L
Sbjct: 2465 VHISCTPLPTCTPLPAQTSLLTSSSPAPLDSLPVPISPGVTNL 2507
Score = 51 (23.0 bits), Expect = 7.6e-29, Sum P(5) = 7.6e-29
Identities = 34/134 (25%), Positives = 55/134 (41%)
Query: 2065 ASSIPRG-ESKGPDA-EANNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVG 2122
A SIP E + P + E N GGG + ++ + GL L S +E ++
Sbjct: 2575 AESIPDDQEQEVPGSVEGTNRTLLPGGGELTVSLSESNGLELPPSAASDEPLQLLETHRN 2634
Query: 2123 SEKESIASAVPLDESKGPDAEVSSQ-TAIE-GGGVVSIPV-PEEADGPASFLAAEEE-KN 2178
E ++ P+ S+ P V ++ TA S P P A P +A+ E +
Sbjct: 2635 LE-DTREVQTPVSNSEKPQELVRAEVTAPSTSSSATSSPEGPLPARPPRRRTSADVEIRG 2693
Query: 2179 ECSDK--EPVGSSV 2190
+ S + +P G V
Sbjct: 2694 QGSGRTGQPPGPKV 2707
Score = 50 (22.7 bits), Expect = 4.2e-31, Sum P(8) = 4.2e-31
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 891 VPVKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGS 924
+P KR G ++G A +RG+ Q P P+GS
Sbjct: 3089 MPRKRSGAPVGSSGMA--KRGRLQPPSPLGPEGS 3120
Score = 50 (22.7 bits), Expect = 4.3e-28, Sum P(6) = 4.3e-28
Identities = 13/65 (20%), Positives = 30/65 (46%)
Query: 703 SVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATH-D 761
SV +++ ++ + ++ ++ C D+ Q AEQ + + N+ PA +
Sbjct: 2212 SVPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENEGFPAGEGE 2271
Query: 762 SSSQP 766
+S+P
Sbjct: 2272 EASRP 2276
Score = 49 (22.3 bits), Expect = 5.4e-28, Sum P(6) = 5.4e-28
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEE 822
+P GS+ + VP + VAS +L + I A + KA + + F E
Sbjct: 2204 EPPGSSVSSVPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNE 2261
Score = 48 (22.0 bits), Expect = 4.2e-31, Sum P(8) = 4.2e-31
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 1765 PSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIP 1821
P S+ EA+ G E+ + + G + V +Q D I+ P HL IP
Sbjct: 3117 PEGSVEESEAEASGDEEEGDGTPRR-RTGPRRLVGTT-NQGDQRILRSSAPPHLSIP 3171
Score = 47 (21.6 bits), Expect = 1.7e-30, Sum P(8) = 1.7e-30
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 733 VAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTP 771
V PD +S + QP+ + SSS GS P
Sbjct: 2977 VLDPDSSSVLESCGLGVQRQPLGQAESEGSSSDEDGSRP 3015
Score = 47 (21.6 bits), Expect = 6.8e-29, Sum P(6) = 6.8e-29
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 2133 PLDESKGPDAEVSSQTAIEGGGVVSIPVPEEADGPAS 2169
P D +G D SS + + GV IP PE A+
Sbjct: 2830 PADAGRGVDEAPSSISKGKTNGVDPIPGPETVTATAA 2866
Score = 46 (21.3 bits), Expect = 5.7e-27, Sum P(8) = 5.7e-27
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVP 596
I SP + P++ L G S+ DGN+ S T P+P
Sbjct: 2887 ILSPVEKRRRGRPPKARDLPIPGTISSPGDGNLES-RTQPLP 2927
Score = 45 (20.9 bits), Expect = 2.5e-30, Sum P(7) = 2.5e-30
Identities = 19/75 (25%), Positives = 30/75 (40%)
Query: 2027 VRGDGIVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDA 2086
+R +VP E++ S V P + P G + +AEA+ +
Sbjct: 3075 LRPGSLVPPLETEKMPRKRSGAPVGSSGMAKRGRLQPPSPLGPEGSVEESEAEASGD-EE 3133
Query: 2087 EGGGN-MRQTVPQDL 2100
EG G R+T P+ L
Sbjct: 3134 EGDGTPRRRTGPRRL 3148
Score = 43 (20.2 bits), Expect = 4.9e-28, Sum P(5) = 4.9e-28
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 2157 SIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALE 2216
SIP +E + P S + V S S P A + EP+ +++ LE
Sbjct: 2577 SIPDDQEQEVPGSVEGTNRTLLPGGGELTVSLSESNGLELPPSAASDEPLQLLETHRNLE 2636
Query: 2217 NTSE 2220
+T E
Sbjct: 2637 DTRE 2640
Score = 43 (20.2 bits), Expect = 2.2e-27, Sum P(6) = 2.2e-27
Identities = 77/323 (23%), Positives = 122/323 (37%)
Query: 1027 PGFNSPNENPGEL-TGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSS 1085
PG + + GE+ T+ A V P ++ AS +L P N ++ + S
Sbjct: 2502 PGVTNLLLDSGEVEVCTQELAPVESLELPGMTNSEASLV-SLVPPNDLLPVAVDVLPES- 2559
Query: 1086 PDDKSLPMVPNLETAPPGFDIPIEKHNE-----QSRNQNNPEVKGEETPVSSEA-----P 1135
+K+LP++P + IP ++ E + N+ GE T SE+ P
Sbjct: 2560 --EKNLPLIPAPSSTLEAESIPDDQEQEVPGSVEGTNRTLLPGGGELTVSLSESNGLELP 2617
Query: 1136 ASTEAFEQEKVTNTSSFVNLAD-------LSSDDKTCSVTPAMETAPGFDIPIEKGVEQS 1188
S + E ++ T NL D +S+ +K + A TAP E
Sbjct: 2618 PSAASDEPLQLLETHR--NLEDTREVQTPVSNSEKPQELVRAEVTAPSTSSSATSSPE-- 2673
Query: 1189 GTEIDAKVKWKNTPLPGEAIVAGI-EVFKPEN-KTDGDSVEKLEDTVDDHSLVKELIHRS 1246
G + A+ + T E G +P K +L V++ LVK HR+
Sbjct: 2674 GP-LPARPPRRRTSADVEIRGQGSGRTGQPPGPKVLRKLPGRLVTVVEEKELVKRRRHRA 2732
Query: 1247 PDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPI 1306
S +V PG SE S+ P +P I S GP S + + + T LS
Sbjct: 2733 TA-STLV----PG-VSEVSAS-P-RSPSI-HSMSGPESSPPSSGPCE-AAPTSSLSTPTQ 2782
Query: 1307 NSGTECSTVSVKTDVGNHPQNVE 1329
++ C + G P+N E
Sbjct: 2783 HTFIACRHNELGITGGGSPENGE 2805
Score = 40 (19.1 bits), Expect = 1.6e-29, Sum P(7) = 1.6e-29
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 575 PSGGESTATDGNV-SSIPTAPVPDSVSPSAV 604
P+ ++A + SS+ TAP+P S +P+ V
Sbjct: 2431 PAASVASAPASAITSSLATAPIPIS-APNPV 2460
Score = 39 (18.8 bits), Expect = 1.6e-26, Sum P(5) = 1.6e-26
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 1956 DPVNSSVTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVD-DES 2014
+P SSV+ + E A Q H+L AE +E+ + + + + + +E+
Sbjct: 2204 EPPGSSVSSVPEEEEETVASKQTHILEQALCRAED-EEDIRAATQAKAEQVAELAEFNEN 2262
Query: 2015 KG 2016
+G
Sbjct: 2263 EG 2264
Score = 37 (18.1 bits), Expect = 1.3e-31, Sum P(7) = 1.3e-31
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 42 EVDTLIPKHYL 52
E DT +P+H L
Sbjct: 969 EADTFLPRHRL 979
Score = 37 (18.1 bits), Expect = 1.3e-31, Sum P(7) = 1.3e-31
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 447 VLPAPSGTVKVE 458
++PAPS T++ E
Sbjct: 2565 LIPAPSSTLEAE 2576
Score = 37 (18.1 bits), Expect = 8.1e-30, Sum P(8) = 8.1e-30
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 1184 GVEQSGTEIDAKVKWKNTPL-PGEAIVAGIEVFKPENKTDGDSV 1226
G+E + + K+++T L PG ++V +E K K G V
Sbjct: 3056 GLELTPPVVSLTPKFRSTRLRPG-SLVPPLETEKMPRKRSGAPV 3098
Score = 37 (18.1 bits), Expect = 8.6e-27, Sum P(6) = 8.6e-27
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1578 PSNALLSSSKDIIAESAK 1595
P N LL + D++ ES K
Sbjct: 2544 PPNDLLPVAVDVLPESEK 2561
Score = 37 (18.1 bits), Expect = 8.6e-27, Sum P(6) = 8.6e-27
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 671 LGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQD--ALSQ-------ELS--NK 719
L PP S VS+ PE + + + L + + ++D A +Q EL+ N+
Sbjct: 2202 LEEPPGSSVSSVPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNE 2261
Query: 720 IQVQPCGVATSADVAGPDQKPAEQS 744
+ P G A GP + E S
Sbjct: 2262 NEGFPAGEGEEASRPGPGAEDEEMS 2286
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 398 (145.2 bits), Expect = 2.3e-31, Sum P(5) = 2.3e-31
Identities = 84/172 (48%), Positives = 113/172 (65%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL
Sbjct: 2042 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2101
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
+++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RD
Sbjct: 2102 MERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2160
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
V + R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 2161 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 2209
Score = 80 (33.2 bits), Expect = 2.3e-31, Sum P(5) = 2.3e-31
Identities = 49/207 (23%), Positives = 86/207 (41%)
Query: 2032 IVPETVPEELGLPSSPMVVXXXXXXXXXXXXPSASSIPRGESKGPDAEANNIIDAEGGGN 2091
+V + P LG PS P + P A + + E ++ +E +
Sbjct: 2520 LVTPSSPLLLGPPSVP--ISASVTNLPLGLRPEAELCAQALASPESLELASVASSETS-S 2576
Query: 2092 MRQTVPQDLGLPLSSS--DVEEEKIEGFSKPVGSEKESIASAVPL-DESKGPD-AEVSSQ 2147
+ P+DL LP++ V E+ + P A ++P E + PD AE ++
Sbjct: 2577 LSLVPPKDL-LPVAVEILPVSEKNLS--LTPSAPSLTLEAGSIPNGQEQEAPDSAEGTTL 2633
Query: 2148 TAIEGGGVVSIPVPEEADG---PASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFE 2204
T + G + + V E++G P S A++E E + + ++ E+K P + +
Sbjct: 2634 TVLPEGEELPLCV-SESNGLELPPS-AASDEPLQEPLEADRTSEELT--EAKTPTSSPEK 2689
Query: 2205 PMDVVDGAVALENTSEGMG----GPSP 2227
P ++V VA +TS GPSP
Sbjct: 2690 PQELVTAEVAAPSTSSSATSSPEGPSP 2716
Score = 61 (26.5 bits), Expect = 2.3e-31, Sum P(5) = 2.3e-31
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 18 SVHNSVMELRNICNHPYL 35
SV N +M+LR +CNHP L
Sbjct: 889 SVINILMQLRKVCNHPNL 906
Score = 61 (26.5 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 36/160 (22%), Positives = 56/160 (35%)
Query: 448 LPAPSGTVKVEKDAMTG--QSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQPTTAFVP 505
LP TV EK+ + Q A+++L + V P S P P
Sbjct: 2750 LPGRLVTVVEEKELVRRRRQQRGAASTLVPGVSETSASPGSPSVRSMSGPESSP-----P 2804
Query: 506 VAPGSQSA--SACPSTPMQPKGRGRRIQ---SGEQVPRRR-GKKIGLVLPAASDDIPSPG 559
+ ++A S+ P+ P QP R I+ +G P G + + PA G
Sbjct: 2805 IGGPCEAAPSSSLPTPPQQPFIARRHIELGVTGGGSPENGDGALLAITPPAVKR---RRG 2861
Query: 560 PDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSV 599
PK N P S+ G + P P+++
Sbjct: 2862 RPPKKNRSPADAGRGVDEAPSSTLKGKTNGADPVPGPETL 2901
Score = 57 (25.1 bits), Expect = 4.9e-29, Sum P(5) = 4.9e-29
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 2111 EEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGG 2153
EE++E K + KE + +P +E +GP A S GG
Sbjct: 2336 EEQVEAARKDLDQAKEEVFR-LPQEEEEGPGAGDESSCGTGGG 2377
Score = 54 (24.1 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 26/80 (32%), Positives = 32/80 (40%)
Query: 508 PGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIP---SPGPDPKT 564
PG + P + PK R R++ G VP +K LP P SPG +
Sbjct: 3101 PGGLELTP-PVVSLTPKLRSTRLRPGSLVPPLETEK----LPRKRAGAPVGGSPGLAKRG 3155
Query: 565 NEQPQSESLNPSGG--ESTA 582
QP S L P G ES A
Sbjct: 3156 RLQPPSP-LGPEGSVEESEA 3174
Score = 48 (22.0 bits), Expect = 4.0e-28, Sum P(5) = 4.0e-28
Identities = 30/124 (24%), Positives = 57/124 (45%)
Query: 655 TQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGK--QDAL 712
T G P + +++A S + ++ PE + + S GL L S + + Q+ L
Sbjct: 2610 TLEAGSIPNGQ-EQEAPDSAEGTTLTVLPEGEELPLCVSESNGLELPPSAASDEPLQEPL 2668
Query: 713 SQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSS-SQPSGSTP 771
+ +++ ++ TS+ P+ KP E +V + + P+T S+ S P G +P
Sbjct: 2669 EADRTSE-ELTEAKTPTSS----PE-KPQE----LVTAE--VAAPSTSSSATSSPEGPSP 2716
Query: 772 AQVP 775
A+ P
Sbjct: 2717 ARPP 2720
Score = 45 (20.9 bits), Expect = 8.0e-28, Sum P(5) = 8.0e-28
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 557 SPGPDPKTNEQPQSESLNPSGGESTATDGNVSS-IPTAPVPDSVSP 601
SP + P++ L G S+A DGN S P P ++P
Sbjct: 2932 SPVEKRRRGRPPKARDLPIPGTISSAGDGNSESRTQPPPHPSPLTP 2977
Score = 43 (20.2 bits), Expect = 2.3e-31, Sum P(5) = 2.3e-31
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 708 KQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPA 758
+++ ++ + ++ ++ C D+ Q AEQ + + N+ PA
Sbjct: 2229 EEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENDGFPA 2279
Score = 43 (20.2 bits), Expect = 1.9e-29, Sum P(5) = 1.9e-29
Identities = 30/122 (24%), Positives = 47/122 (38%)
Query: 1820 IPASLATPEEKTEGSEKDPDSSFAAQ----EDPKESVVEA---GDQMGVSLGGATVMEKS 1872
+ S + P+ K K+P S +Q + SV+E+ G + G + S
Sbjct: 2996 VTISTSPPKRKRGRPPKNPPSPRPSQLPVLDRDSTSVLESCGLGRRRQPQGQGESEGSSS 3055
Query: 1873 SEDLATPPLSLANEEEMIEGFDNDPTGISMAV---MDSKECAAEAADQMCVSEGCVVVTE 1929
ED + P LA EG +G SM V D + A + ++ V +T
Sbjct: 3056 DEDGSRPLTRLARLRLEAEGMRGRKSGGSMVVAVIQDDLDLADSGPGGLELTPPVVSLTP 3115
Query: 1930 KL 1931
KL
Sbjct: 3116 KL 3117
Score = 42 (19.8 bits), Expect = 2.9e-31, Sum P(5) = 2.9e-31
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEE 822
+PS S+ P + VAS +L + I A + KA + + F E
Sbjct: 2216 EPSSSSVPSAPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNE 2273
Score = 41 (19.5 bits), Expect = 3.1e-29, Sum P(5) = 3.1e-29
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 891 VPVKRHGRKTPTTGEAP-RRRGKKQGSGPSIPDGS 924
+P KR G P G +RG+ Q P P+GS
Sbjct: 3136 LPRKRAG--APVGGSPGLAKRGRLQPPSPLGPEGS 3168
Score = 40 (19.1 bits), Expect = 8.0e-28, Sum P(5) = 8.0e-28
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 2133 PLDESKGPDAEVSSQTAIEGGGVVSIPVPE 2162
P D +G D SS + G +P PE
Sbjct: 2870 PADAGRGVDEAPSSTLKGKTNGADPVPGPE 2899
Score = 39 (18.8 bits), Expect = 3.2e-27, Sum P(5) = 3.2e-27
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 724 PCGVATSADVAGPDQKP 740
PC A S+ + P Q+P
Sbjct: 2808 PCEAAPSSSLPTPPQQP 2824
Score = 38 (18.4 bits), Expect = 7.3e-31, Sum P(5) = 7.3e-31
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1127 ETPVSSEAPASTEAFEQEKVTNTSSFV 1153
E P SS P++ E E+E V + + +
Sbjct: 2215 EEPSSSSVPSAPEE-EEETVASKQTHI 2240
Score = 38 (18.4 bits), Expect = 7.0e-28, Sum P(4) = 7.0e-28
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 2183 KEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE 2220
+EP SSV +E E A + +++ A+ E
Sbjct: 2215 EEPSSSSVPSAPEEEEETVASKQTHILEQALCRAEDEE 2252
Score = 37 (18.1 bits), Expect = 2.3e-31, Sum P(5) = 2.3e-31
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 42 EVDTLIPKHYL 52
E DT +P+H L
Sbjct: 959 EADTFLPRHRL 969
Score = 37 (18.1 bits), Expect = 9.2e-31, Sum P(5) = 9.2e-31
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 1956 DPVNSSVTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVD-DES 2014
+P +SSV + E A Q H+L AE +E+ + + + + + +E+
Sbjct: 2216 EPSSSSVPSAPEEEEETVASKQTHILEQALCRAED-EEDIRAATQAKAEQVAELAEFNEN 2274
Query: 2015 KG 2016
G
Sbjct: 2275 DG 2276
Score = 37 (18.1 bits), Expect = 3.5e-26, Sum P(6) = 3.5e-26
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 2068 IPRGESKGPDAEANNIIDAEGGGNMRQT 2095
+P+ E +GP A + GGG R++
Sbjct: 2356 LPQEEEEGPGAGDESSCGT-GGGTHRRS 2382
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 394 (143.8 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 91/194 (46%), Positives = 118/194 (60%)
Query: 21 NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVL 80
N +M+LR +HPYL E + +H +V GKL +LD +L L+ H VL
Sbjct: 302 NVLMQLRKCVDHPYLFD-GVEPEPFEMGEH----LVEASGKLSLLDSMLAYLQEGGHHVL 356
Query: 81 FFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140
FS MTR+LD+++DYL ++ Y Y RLDG G +R I F+ +D FIFLLS +AGG
Sbjct: 357 LFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFSTKD--VFIFLLSTKAGG 414
Query: 141 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 200
VG+NL AADTVI D D+NPQ DLQA ARAHRIGQ R V V+R T+EE + + A
Sbjct: 415 VGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVS 474
Query: 201 KLGVANQSITAGFF 214
KL + + I G F
Sbjct: 475 KLRLTDTVIEEGRF 488
Score = 53 (23.7 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 759 THDSSSQPSGSTPAQVP--SMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERV- 815
T SSS+P+ S+P++ P S N TK +S +G P LA M+ V
Sbjct: 884 TTPSSSKPAASSPSESPHSSSPPANREGLTKSAELSTTSHEGPGAPGLA-DFMRGVHVYF 942
Query: 816 -NIQSFEEKACT 826
N+ + E+K T
Sbjct: 943 YNMAATEKKKLT 954
Score = 50 (22.7 bits), Expect = 7.9e-31, Sum P(3) = 7.9e-31
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 1310 TECSTVSVKTDVGNHPQNVEPTSASPERSGPQNSAVGFCDKSEIPSMEAEVAKCP 1364
T ST S T + P P S SP S P + G +E+ + E P
Sbjct: 876 TVSSTASTTTPSSSKPAASSP-SESPHSSSPPANREGLTKSAELSTTSHEGPGAP 929
Score = 44 (20.5 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 690 QSENNSGGLRLSKSVSMGKQDALSQELSN 718
Q+++ + GL+LS+ + G LS E S+
Sbjct: 493 QAQSAASGLQLSEILKFGVDKLLSSEESS 521
Score = 44 (20.5 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 1008 KQSSDDKTCSVTPTVETPP---PGFNSPNENP 1036
++ S T S T + TP P +SP+E+P
Sbjct: 869 RRGSSHATVSSTASTTTPSSSKPAASSPSESP 900
Score = 43 (20.2 bits), Expect = 8.3e-31, Sum P(2) = 8.3e-31
Identities = 31/143 (21%), Positives = 58/143 (40%)
Query: 1734 VLEDSKGSIGDQMDCCQSGVVVPENLS---D--FCQPSSSLAPWEAKIDGSSEKDPVSSQ 1788
V+E+ + S+ DQ SG+ + E L D SS+ + ++ +D Q
Sbjct: 482 VIEEGRFSLLDQAQSAASGLQLSEILKFGVDKLLSSEESSVQDVDLQLILGQSRD---GQ 538
Query: 1789 SVLEGSKETVAEAGDQMDISIMPEKLP---EHLDIPASLATPEEKTEGSEKDPDSSFAAQ 1845
+ + + E+ ++ D + + E D + +EKT E + FA
Sbjct: 539 WLTDEEHAKLNESNEEEDEDMEGQNHMYYFEGKDYSKDPSAEDEKT--FELLLEKQFAEM 596
Query: 1846 EDPKESVVEAGDQMGVSLGGATV 1868
ED ++ ++ GVSL G +
Sbjct: 597 EDAEKEGRALRNKAGVSLSGPLI 619
Score = 43 (20.2 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 826 TNASKSKATLPALDSITE-PYTGS--TNTEGI------SNTIHHVPGA 864
T S SK PA S +E P++ S N EG+ S T H PGA
Sbjct: 884 TTPSSSK---PAASSPSESPHSSSPPANREGLTKSAELSTTSHEGPGA 928
Score = 40 (19.1 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 15/49 (30%), Positives = 18/49 (36%)
Query: 341 HYGRGKRAREVRSYEEQWTEEEFEKMCQAES----SDSPKLKEEGLEKS 385
+Y RG V S T + + S S SP EGL KS
Sbjct: 867 YYRRGSSHATVSSTASTTTPSSSKPAASSPSESPHSSSPPANREGLTKS 915
Score = 40 (19.1 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1127 ETPVSSEAPASTEAFEQEKVTNTSS 1151
E+P SS PA+ E + +T+S
Sbjct: 898 ESPHSSSPPANREGLTKSAELSTTS 922
Score = 39 (18.8 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 1823 SLATPEEKTEGSEKDPD 1839
SL P +EG + +PD
Sbjct: 677 SLCLPRVDSEGEDMEPD 693
Score = 39 (18.8 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1343 SAVGFCDKSEIPSMEAEVAKCPSDAIVNNLLETPLDIK 1380
+A+G +S+ P + E+A D + N+L P+D K
Sbjct: 746 TALGL--RSDEPRKQYELAGDMKDLELGNVLLFPVDDK 781
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 399 (145.5 bits), Expect = 5.8e-31, Sum P(3) = 5.8e-31
Identities = 92/218 (42%), Positives = 131/218 (60%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVME-LRNICNHPYLSQLHA--EEVDTLIPKHYLPPIVR 57
++R +NL S + + N V + LR P L+ LH E+ T P P +++
Sbjct: 1603 IRRYVQNLSSTHWQHEQRIENIVDQALR-----PKLALLHPIISEMTTKFPD---PRLIQ 1654
Query: 58 L-CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG 116
CGKL+ +DRLL +LK HRVL F+ MT++LDV+E +L + + YLRLDG T R
Sbjct: 1655 YDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQ 1714
Query: 117 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 176
L+++FN D F F+LS R+GGVG+NL ADTVI +D+DWNP +D QAQ R HRIGQ
Sbjct: 1715 ILMERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQT 1773
Query: 177 RDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 214
RDV + R + +T+E + A K +++ +I G F
Sbjct: 1774 RDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNF 1811
Score = 63 (27.2 bits), Expect = 5.8e-31, Sum P(3) = 5.8e-31
Identities = 39/199 (19%), Positives = 74/199 (37%)
Query: 566 EQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELN 625
+Q Q L +G T ++S+ A + S S+V T+ ++ S +N
Sbjct: 2832 QQQQQGQLPVAGQPQQVTQHQIASLVKASTAAAASGSSVNAGGVTVSATNPTVQAGS-VN 2890
Query: 626 TNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDV--SAGP 683
L + Q + T ++ R A G P +++ + GP
Sbjct: 2891 MTLPQLKPGSQIKVTMPNQMRHLQMQQQLTMPRKIS-RMTQLVSASGQPTATNIITTTGP 2949
Query: 684 ESKSNLQSENNSGGLRLSKSVSMGKQDALSQELS--NKIQVQPCGVATSADVAGPDQKPA 741
+ + Q SGG L S +Q Q++ N +Q Q + + ++ +
Sbjct: 2950 QQQQ--QGVTVSGGGTLPTVASQQQQQQHQQKVGGGNSVQAQLLHIQNTKGLS--NSVTM 3005
Query: 742 EQSVRVVQSNQPINLPATH 760
+Q +V++S Q L T+
Sbjct: 3006 QQIQQVMRSGQQGTLATTN 3024
Score = 54 (24.1 bits), Expect = 5.0e-30, Sum P(3) = 5.0e-30
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 717 SNKIQVQPCGVATSADV-AGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVP 775
SN Q+ V TS+ + AG Q+ A+QS +++ T + PS P Q+
Sbjct: 2466 SNTQQLVKTIVGTSSSLTAGQLQQLAQQSAVASGGQSSVSVVLTTPVQTLPSVVQP-QIG 2524
Query: 776 SMDLGNVASDTKEVLSENSSSK-GGVIPILALSNMKAV 812
S + S + + L NSS + G ++ +L + +V
Sbjct: 2525 SG--AQIVSISSQTLPVNSSPQLGSIVQTQSLPQVVSV 2560
Score = 48 (22.0 bits), Expect = 5.8e-31, Sum P(3) = 5.8e-31
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 353 SYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPA-VYSTE 401
+Y + T ++ M Q+E +S + K E ++ + T S P+ V TE
Sbjct: 1814 TYFKSSTIKDLFTMEQSEQDESSQEKSENKDRIVATTTLSDTPSTVVETE 1863
Score = 47 (21.6 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 23/94 (24%), Positives = 40/94 (42%)
Query: 1773 EAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDISIMPEKLP---EHLDIPAS-LATPE 1828
E+ + S KD + + + L + TV E ++ + L + D+ A+ A E
Sbjct: 1834 ESSQEKSENKDRIVATTTLSDTPSTVVET-EKQSLRAFEHALAAAEDEQDVQATKTAKAE 1892
Query: 1829 EKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVS 1862
+ +E D + A EDP E G Q+ +S
Sbjct: 1893 VAADLAEFDENIPIAT-EDPN---AEGGPQVELS 1922
Score = 41 (19.5 bits), Expect = 3.1e-30, Sum P(3) = 3.1e-30
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 355 EEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTV--VSSSAPAVYSTE 401
++Q ++ +++ Q + + +++ +++ LPTV V + P + E
Sbjct: 2357 QQQQPQQVVQQVQQQQQQQQQQQQQQVVQQQLPTVSNVQQTLPVQQTVE 2405
Score = 40 (19.1 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 15/71 (21%), Positives = 27/71 (38%)
Query: 766 PSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKAC 825
P P QV + ++ + + SS G + + A + VN+ + K
Sbjct: 2840 PVAGQPQQVTQHQIASLVKASTAAAASGSSVNAGGVTVSATNPTVQAGSVNMTLPQLKP- 2898
Query: 826 TNASKSKATLP 836
S+ K T+P
Sbjct: 2899 --GSQIKVTMP 2907
Score = 39 (18.8 bits), Expect = 5.0e-30, Sum P(3) = 5.0e-30
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 372 SDSPKLKEEGLEKSLPTVVS-SSAPAV 397
+ SP+L +SLP VVS S+ P V
Sbjct: 2540 NSSPQLGSIVQTQSLPQVVSVSTLPTV 2566
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 373 (136.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 76/156 (48%), Positives = 101/156 (64%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL++LDRLL L + HRVL F+ MT++LD++E +L +RYLRLDG T R L
Sbjct: 990 CGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQIL 1049
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
++FN D +F+LS R+GG+G+NL ADTVI +D+DWNPQ+D QAQ R+HRIGQ RD
Sbjct: 1050 TERFNNDDK-IPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRD 1108
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 214
V + R + TVE + A K + I G F
Sbjct: 1109 VHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEF 1144
Score = 66 (28.3 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 3 RVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ 37
R E L S GN S+ N +M+LR +CNHP L +
Sbjct: 716 RTREILAS-GNFM--SIINCLMQLRKVCNHPNLHE 747
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 372 (136.0 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 76/156 (48%), Positives = 98/156 (62%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ LD+LL LKA HR L F+ MT++LDV+E +L +RYLRLDG T R L
Sbjct: 1372 CGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQIL 1431
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
D+FN D+ F+LS R+GG+G+NL ADTVI +D DWNP +D Q Q R HRIGQ RD
Sbjct: 1432 TDRFNN-DNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRD 1490
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 214
V + RF + T+E + A K + + I G F
Sbjct: 1491 VHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEF 1526
Score = 65 (27.9 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 3 RVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 49
+ +E L S GN S+ N +M+LR +CNHP L + +P+
Sbjct: 1096 QTKETLAS-GNYL--SIINCLMQLRKVCNHPDLFETRPISTSFAMPR 1139
Score = 59 (25.8 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 37/166 (22%), Positives = 61/166 (36%)
Query: 1125 GEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSD-DKTCSVTPAMETAPGFDIPIEK 1183
G + + EA A+ + + +VTNTS A+ D D + +E A D
Sbjct: 1541 GNDEALKDEASAAMDRVLENRVTNTSRVFEQAEDKEDIDAAKNAQKELEHADDGDFDDRA 1600
Query: 1184 GVEQSG-TEIDAKVKWKN-------TPLPGEAIVAGIEVFKPENKTDGDSVEKLEDTVDD 1235
SG T A TPLP EA + + ++ E EDT D
Sbjct: 1601 NANASGVTAASASASGAGQTPTQAGTPLPDEA----------QQSLNANNAEVAEDTADS 1650
Query: 1236 HSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEG 1281
V + D ++ + N ++ +P++ + KS +G
Sbjct: 1651 DPSVGHI-------DDYLLRFMEWNMKDEPLVLPVDKSM-KKSKKG 1688
Score = 42 (19.8 bits), Expect = 9.6e-29, Sum P(3) = 9.6e-29
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1107 PIEKHNEQSRNQNNPEVKGEET 1128
P+ +QS N NN EV E+T
Sbjct: 1627 PLPDEAQQSLNANNAEV-AEDT 1647
Score = 42 (19.8 bits), Expect = 4.0e-28, Sum P(3) = 4.0e-28
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 5 EENLGSIGNSKGRSVHNS-VMELRNICNHPYLSQLHAEEV 43
EE IGN G+ H + LR P LS H V
Sbjct: 232 EETADDIGND-GQDEHGQRIQRLRIKVKKPALSIQHPSHV 270
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 398 (145.2 bits), Expect = 1.8e-30, Sum P(6) = 1.8e-30
Identities = 84/172 (48%), Positives = 113/172 (65%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL +LKA HRVL F+ MTR+LDV+E +LT+ + YLRLDG T R AL
Sbjct: 2053 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2112
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
+++FN D F F+LS R+GGVGVNL ADTV+ +D+DWNP +D QAQ R HRIGQ RD
Sbjct: 2113 MERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2171
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
V + R + +TVEE + A K + + +I G F T+A +++ + L
Sbjct: 2172 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIREL 2220
Score = 76 (31.8 bits), Expect = 1.8e-30, Sum P(6) = 1.8e-30
Identities = 31/110 (28%), Positives = 50/110 (45%)
Query: 1779 SSEKDP-VSSQSVLEGSKETVAEAGDQMDISIMP--EKLP------EHLDIPASLATPEE 1829
SS P +++ SV G ++ V E + +S++P E++P L++P S A+ E
Sbjct: 2615 SSAPSPTLAAGSVPNGQEQEVPEPAEATILSVLPDGEEMPTCLSESNRLELPPSAASDEP 2674
Query: 1830 KTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATP 1879
E E D +S + S E ++ VS AT SS +TP
Sbjct: 2675 LPEPLETDKNSEELVEAQTPTSTPEKPQEL-VS-AEATAPSTSSSATSTP 2722
Score = 61 (26.5 bits), Expect = 1.8e-30, Sum P(6) = 1.8e-30
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 18 SVHNSVMELRNICNHPYL 35
SV N +M+LR +CNHP L
Sbjct: 897 SVINILMQLRKVCNHPNL 914
Score = 59 (25.8 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 24/77 (31%), Positives = 32/77 (41%)
Query: 508 PGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQ 567
PG ++ P + PK R R++ G VP +K+ A PG +T Q
Sbjct: 3113 PGGLELTS-PVVSLAPKLRSTRLRPGSLVPPLETEKVPRKRAGAPVG-SGPGLAKRTRLQ 3170
Query: 568 PQSESLNPSGG--ESTA 582
P S L P G ES A
Sbjct: 3171 PPSP-LGPEGSVEESEA 3186
Score = 57 (25.1 bits), Expect = 5.1e-30, Sum P(4) = 5.1e-30
Identities = 47/252 (18%), Positives = 89/252 (35%)
Query: 491 VGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQ--VPRRRGKKIGLVL 548
+ + P V + P S+ + S+ P + +G++ VP I VL
Sbjct: 2588 ITLVPPKDLLPVAVEILPVSEKNLSLTSSAPSPTLAAGSVPNGQEQEVPEPAEATILSVL 2647
Query: 549 PAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQS 608
P +++P+ + E P S + + E TD N + A P S +P K Q
Sbjct: 2648 PDG-EEMPTCLSESNRLELPPSAASDEPLPEPLETDKNSEELVEAQTPTS-TPE--KPQE 2703
Query: 609 GTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKR 668
++A + +S +T ++ ++ +G R Q G R+
Sbjct: 2704 LVSAEATAPSTSSSATSTPEGSSPARPPRRRTSADVEIRGQGAGRPGQPPGPKVLRKLPG 2763
Query: 669 QALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVA 728
+ + ++ + S G S ++S S+ PC VA
Sbjct: 2764 RLVTVVEEKELVRRRRQQRGTASTLVPGVSETGTSPGSPSARSMSGPESSPPTSGPCEVA 2823
Query: 729 TSADVAGPDQKP 740
+ + + P Q+P
Sbjct: 2824 SPSTLPTPTQQP 2835
Score = 55 (24.4 bits), Expect = 9.1e-29, Sum P(6) = 9.1e-29
Identities = 35/139 (25%), Positives = 53/139 (38%)
Query: 1011 SDDKTCSVTPTVETPPPGFNSPNENPGELTGTK----NDASVRGDHTPVSGHTLASKTEA 1066
S C+ P TPPP P LT + SV PV+ L EA
Sbjct: 2506 SCSSACTPPPAC-TPPPAQTPPPAQTSLLTPSSPLLLGLPSVPMS-PPVTNLPLGLGPEA 2563
Query: 1067 -LKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDI-PI-EKHNEQSRNQNNPEV 1123
L + A +E +A +S + + +VP + P +I P+ EK+ + + +P +
Sbjct: 2564 ELCAQAMASTESLE-LAMASSETSPITLVPPKDLLPVAVEILPVSEKNLSLTSSAPSPTL 2622
Query: 1124 KGEETP--VSSEAPASTEA 1140
P E P EA
Sbjct: 2623 AAGSVPNGQEQEVPEPAEA 2641
Score = 52 (23.4 bits), Expect = 1.3e-28, Sum P(5) = 1.3e-28
Identities = 42/188 (22%), Positives = 60/188 (31%)
Query: 442 SPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQ-PT 500
+P+PV + AP M S LP P +Q P
Sbjct: 2467 APIPVPISAPIPISAPNPVTMLPVHILPSPPLPSAQIPPSCSSACTPPPACTPPPAQTPP 2526
Query: 501 TAFVPV-APGSQSASACPSTPMQPKGRGRRIQSG---EQVPRRRGKKIGLVLPAASDDIP 556
A + P S PS PM P + G E + L L AS +
Sbjct: 2527 PAQTSLLTPSSPLLLGLPSVPMSPPVTNLPLGLGPEAELCAQAMASTESLELAMASSETS 2586
Query: 557 SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSA 616
P + P + + P ++ N+S +AP P + S GQ + P A
Sbjct: 2587 PITLVPPKDLLPVAVEILP------VSEKNLSLTSSAPSPTLAAGSVPNGQEQEV-PEPA 2639
Query: 617 VAALNSEL 624
A + S L
Sbjct: 2640 EATILSVL 2647
Score = 51 (23.0 bits), Expect = 1.6e-28, Sum P(5) = 1.6e-28
Identities = 33/132 (25%), Positives = 52/132 (39%)
Query: 648 TKGQSRKTQSGGVTPRRRGKRQALGSPPISDV-SAGPESKS--NLQSENNSGGLRLSKSV 704
T T + G P G+ Q + P + + S P+ + SE+N RL
Sbjct: 2614 TSSAPSPTLAAGSVPN--GQEQEVPEPAEATILSVLPDGEEMPTCLSESN----RLELPP 2667
Query: 705 SMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSS- 763
S + L + L + V + P+ KP E +V + P+T S+
Sbjct: 2668 SAASDEPLPEPLETDKNSEEL-VEAQTPTSTPE-KPQE----LVSAEA--TAPSTSSSAT 2719
Query: 764 SQPSGSTPAQVP 775
S P GS+PA+ P
Sbjct: 2720 STPEGSSPARPP 2731
Score = 50 (22.7 bits), Expect = 2.9e-28, Sum P(6) = 2.9e-28
Identities = 39/182 (21%), Positives = 63/182 (34%)
Query: 1119 NNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSD--DKTCSVTPAMETAPG 1176
N P G E + ++A ASTE+ E ++ +S + L D + P E
Sbjct: 2554 NLPLGLGPEAELCAQAMASTESLELAMASSETSPITLVP-PKDLLPVAVEILPVSEKNLS 2612
Query: 1177 FDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVEKLE---DTV 1233
+G+ + + + P P EA + + E T +LE
Sbjct: 2613 LTSSAPSPTLAAGSVPNGQEQ--EVPEPAEATILSVLPDGEEMPTCLSESNRLELPPSAA 2670
Query: 1234 DDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKADDVAD 1293
D L E + + ++V P +T E P E L+ PS S A +
Sbjct: 2671 SDEPL-PEPLETDKNSEELVEAQTPTSTPEK----PQE--LVSAEATAPSTSSSATSTPE 2723
Query: 1294 HS 1295
S
Sbjct: 2724 GS 2725
Score = 48 (22.0 bits), Expect = 4.1e-28, Sum P(5) = 4.1e-28
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 555 IPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVP 596
I SP + P++ L G S+ DGN+ S T P+P
Sbjct: 2942 ILSPVEKRRRGRPPKARDLPLPGTTSSPGDGNLES-RTQPLP 2982
Score = 47 (21.6 bits), Expect = 1.8e-30, Sum P(6) = 1.8e-30
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 765 QPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEE 822
+PSGS+ P + VAS +L + I A + KA + + F E
Sbjct: 2227 EPSGSSVPSAPDDEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNE 2284
Score = 47 (21.6 bits), Expect = 4.1e-28, Sum P(5) = 4.1e-28
Identities = 39/172 (22%), Positives = 64/172 (37%)
Query: 439 ADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQ 498
++ SP+ +V P V VE ++ ++ S ++S P Q V P
Sbjct: 2583 SETSPITLVPPKDLLPVAVEILPVSEKNLSLTSSAPSPTLAAGSVPNGQEQEV---PEPA 2639
Query: 499 PTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPR--RRGKKIGLVLPAASDDIP 556
T + V P + C S + + S E +P K ++ A + P
Sbjct: 2640 EAT-ILSVLPDGEEMPTCLSESNRLE-LPPSAASDEPLPEPLETDKNSEELVEAQT---P 2694
Query: 557 SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSA-VKGQ 607
+ P+ K E +E+ PS S+AT S P P S ++GQ
Sbjct: 2695 TSTPE-KPQELVSAEATAPSTS-SSATSTPEGSSPARPPRRRTSADVEIRGQ 2744
Score = 46 (21.3 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 35/143 (24%), Positives = 53/143 (37%)
Query: 2102 LPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVP 2161
L L+SS G S P G E+E A S PD E T + + +P
Sbjct: 2611 LSLTSSAPSPTLAAG-SVPNGQEQEVPEPAEATILSVLPDGE-EMPTCLSESNRLELPPS 2668
Query: 2162 EEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDVVDG-AVALENTSE 2220
+D P E +KN S +E++ P + +P ++V A A +S
Sbjct: 2669 AASDEPLPE-PLETDKN----------SEELVEAQTPTSTPEKPQELVSAEATAPSTSSS 2717
Query: 2221 GMGGP--SPPLVIAEDKTENEIE 2241
P S P +T ++E
Sbjct: 2718 ATSTPEGSSPARPPRRRTSADVE 2740
Score = 42 (19.8 bits), Expect = 5.2e-30, Sum P(3) = 5.2e-30
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 2183 KEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSE 2220
+EP GSSV E E A + +++ A+ E
Sbjct: 2226 EEPSGSSVPSAPDDEEETVASKQTHILEQALCRAEDEE 2263
Score = 42 (19.8 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 290 PLPPLPSRL 298
PLPPLPS L
Sbjct: 2986 PLPPLPSLL 2994
Score = 42 (19.8 bits), Expect = 9.1e-29, Sum P(6) = 9.1e-29
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 1309 GTECSTVSVKTDVGNHPQNVEPTSAS-PERSGPQNSAVGFCDKSEIPS 1355
GT + V ++ G P + S S PE S P + S +P+
Sbjct: 2783 GTASTLVPGVSETGTSPGSPSARSMSGPESSPPTSGPCEVASPSTLPT 2830
Score = 41 (19.5 bits), Expect = 3.1e-29, Sum P(5) = 3.1e-29
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 293 PLPSRLVTDDDLKALYEAMKIYDAPK 318
PLP L TD + + L EA P+
Sbjct: 2674 PLPEPLETDKNSEELVEAQTPTSTPE 2699
Score = 39 (18.8 bits), Expect = 1.8e-30, Sum P(6) = 1.8e-30
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 2069 PRGESKGPDAEANNIIDAEGGGNMRQTV-PQDLGLPLSSSD 2108
P G + +AEA+ + EG G R+ P+ LG + D
Sbjct: 3177 PEGSVEESEAEASGE-EEEGDGTPRRRPGPRRLGGATTQGD 3216
Score = 38 (18.4 bits), Expect = 1.8e-30, Sum P(6) = 1.8e-30
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 1621 VPEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRIDE 1662
+P+ + E G D++S GS + + G R+ E
Sbjct: 2367 LPQEEEEGPGAGDEVSCGTGGGSHRRSKKAKAPERPGTRVSE 2408
Score = 38 (18.4 bits), Expect = 3.1e-29, Sum P(5) = 3.1e-29
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 652 SRKTQSGGVTPRRR-GKRQALGSPPISD 678
S + + G TPRRR G R+ G+ D
Sbjct: 3189 SGEEEEGDGTPRRRPGPRRLGGATTQGD 3216
Score = 38 (18.4 bits), Expect = 3.3e-27, Sum P(5) = 3.3e-27
Identities = 22/95 (23%), Positives = 34/95 (35%)
Query: 505 PVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIP--SPGPDP 562
P G S+ +P R R++ + R R + +V+ DD+ GP
Sbjct: 3056 PQGQGESEGSSSDEDGSRPLTRLARLRLEAEGVRGRKSEGSMVVAVIQDDLDLADSGPGG 3115
Query: 563 KTNEQPQSESLNPSGGESTATDGN-VSSIPTAPVP 596
P SL P + G+ V + T VP
Sbjct: 3116 LELTSPVV-SLAPKLRSTRLRPGSLVPPLETEKVP 3149
Score = 37 (18.1 bits), Expect = 1.8e-29, Sum P(6) = 1.8e-29
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 708 KQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQ 752
+++ ++ + ++ ++ C D+ Q AEQ + + N+
Sbjct: 2240 EEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNE 2284
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 375 (137.1 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 107/295 (36%), Positives = 148/295 (50%)
Query: 17 RSVHNSVMELRNICNHPY-LSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 75
+ + N VM+ R CN P+ AE+ P +V GK+ +LDRL+P L
Sbjct: 587 KKMQNPVMQARLACNSPHNFYWPWAED-----PSSIDETLVTASGKMLLLDRLIPCLLNK 641
Query: 76 DHRVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134
H++L FS LD+++D+ T + + R+DG S DR A I FN D + IFLL
Sbjct: 642 GHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKAFNT-DKDYKIFLL 700
Query: 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 194
S RAGG G+NL AADTVI+FD+DWNPQ DLQAQ RAHRIGQ + V+V R T TVE+ +
Sbjct: 701 STRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVEQTL 760
Query: 195 RASAEHKLGVANQSITAGFFDNNTSAEDR-REYLESLLRECKKEEXXXXXXXXXXXXXXX 253
A+ K + I G F + S R+ ++ L R ++E
Sbjct: 761 LEKADSKRRLERLVIQKGKFKSLLSESTMSRDDVDELKRALGEDEFERFEASADPASIL- 819
Query: 254 RSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTD---DDLK 305
S+ ++ V R EE A K GL DG+ + ++ D D LK
Sbjct: 820 -SDEDLRVLTD----RSEEAYALAEK---GLDVDGKAFKAVETKRDGDNLMDQLK 866
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 379 (138.5 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 76/156 (48%), Positives = 98/156 (62%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL +LK HR L F+ MT++LD+ E +L Y YLRLDG T R L
Sbjct: 1378 CGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVL 1437
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
++FN D F+F+LS R+GG+G+NL ADTVI +DTDWNP +D QAQ R HRIGQ R+
Sbjct: 1438 TERFNT-DPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTRE 1496
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 214
V + RF T T+EE + + K + I AG F
Sbjct: 1497 VNIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEF 1532
Score = 66 (28.3 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 35/130 (26%), Positives = 52/130 (40%)
Query: 1019 TPTVETPPPG-FNSPNE----NPGELTGTKNDAS-----VRGDHTPVSGHTLASKTEALK 1068
TPT TPPP N+ N P +T T A+ V PVS + T +K
Sbjct: 2931 TPTNITPPPQPLNANNTVTTVTPTPITTTTTTAATTPTTVSPPIKPVSKRSKKEPTVKVK 2990
Query: 1069 PENKAQAGRIENIAN---SSPDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKG 1125
+K +A A S P+ S P + A +++ +Q +NQN P+
Sbjct: 2991 KISKKEAAAQAQAAAQAASLPNQSSQPSIHAQIQA--SLQQQLQQQQQQQQNQNQPQ--- 3045
Query: 1126 EETPVSSEAP 1135
+ TP + P
Sbjct: 3046 QTTPKLAAQP 3055
Score = 61 (26.5 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 18 SVHNSVMELRNICNHPYLSQL 38
S+ N +M+LR +CNHP L ++
Sbjct: 1052 SIINILMQLRKVCNHPDLFEI 1072
Score = 59 (25.8 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 747 VVQSNQPINLPAT-HDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIP 802
V+ ++ N+ + + SS PS S + S+ N D K+ S +SSSK ++P
Sbjct: 2162 VINNSNSGNVTVSGYSGSSTPSSSLSSSTSSISTSN--KDKKKSSSSSSSSKKRLVP 2216
Score = 59 (25.8 bits), Expect = 5.8e-28, Sum P(6) = 5.8e-28
Identities = 27/99 (27%), Positives = 44/99 (44%)
Query: 1698 VEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQSGVVVPE 1757
+E+ K EE + +++KI K +S+ L +S ++ ++ SG V
Sbjct: 2124 IEKAKQEE---ERRAKEKRDQKIHS---KKSNSSSSTLSNSNNNV---INNSNSGNVTVS 2174
Query: 1758 NLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKE 1796
S PSSSL+ + I +S KD S S SK+
Sbjct: 2175 GYSGSSTPSSSLSSSTSSIS-TSNKDKKKSSSSSSSSKK 2212
Score = 56 (24.8 bits), Expect = 5.1e-30, Sum P(5) = 5.1e-30
Identities = 41/197 (20%), Positives = 66/197 (33%)
Query: 608 SGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGK 667
S T+ S+ NS + + S K + + K
Sbjct: 2152 SSTLSNSNNNVINNSNSGNVTVSGYSGSSTPSSSLSSSTSSISTSNKDKKKSSSSSSSSK 2211
Query: 668 RQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGV 727
++ + I KS+ + E+ +G L S VS KQ + +N +
Sbjct: 2212 KRLVPDDIIVTGGVANSDKSDAELEDFAGSLEESL-VS--KQGGVPSTTTNSSTSRKKSE 2268
Query: 728 ATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSG---STPAQVPSMDLGNVAS 784
D + D+ +S +N IN P + SSS SG Q S G V
Sbjct: 2269 YDLFDASSQDEGSTNESGSTTNNNN-INNPTSTSSSSSSSGRKRDRKKQRLSKSNGGVGG 2327
Query: 785 DTKEVLSE-NSSSKGGV 800
++ S +SSS G+
Sbjct: 2328 GGSDLESPISSSSISGI 2344
Score = 56 (24.8 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 552 SDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPT--APVPDSVSP 601
+++I + P TN P + LN + +T T +++ T A P +VSP
Sbjct: 2921 NNNINNNNPSTPTNITPPPQPLNANNTVTTVTPTPITTTTTTAATTPTTVSP 2972
Score = 55 (24.4 bits), Expect = 7.3e-29, Sum P(6) = 7.3e-29
Identities = 28/143 (19%), Positives = 63/143 (44%)
Query: 487 QHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRR-RGKKIG 545
QH + + P S P +F A S S +Q + + + S + + + +K+
Sbjct: 2058 QHYLY-LYPPSPPLISFEAFA--KPSLSKLKRGKIQKQVAQQYVYSKQHTKEKEKERKLL 2114
Query: 546 LVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSA-V 604
+ + D I + + + + + S +S ++ +S+ + +S S + V
Sbjct: 2115 MKMKKEKDKIEKAKQEEERRAKEKRDQKIHSK-KSNSSSSTLSNSNNNVINNSNSGNVTV 2173
Query: 605 KGQSGTIDPSSAVAALNSELNTN 627
G SG+ PSS++++ S ++T+
Sbjct: 2174 SGYSGSSTPSSSLSSSTSSISTS 2196
Score = 53 (23.7 bits), Expect = 5.8e-28, Sum P(6) = 5.8e-28
Identities = 20/86 (23%), Positives = 33/86 (38%)
Query: 1065 EALKPENKAQAGRIENIANSSPDDKSLPMVPNLETAPPGFDIPIEKH--NEQSRNQNNPE 1122
E LK K + EN N + ++K E +I IEK NE+ + N +
Sbjct: 1736 ENLKENEKEKENENEN-ENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKENEK 1794
Query: 1123 VKGEETPVSSEAPASTEAFEQEKVTN 1148
K E + + ++ K+ N
Sbjct: 1795 EKENERDKDKDKDQDQDKDQEMKIIN 1820
Score = 52 (23.4 bits), Expect = 1.3e-29, Sum P(5) = 1.3e-29
Identities = 14/69 (20%), Positives = 34/69 (49%)
Query: 562 PKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQS---GTIDPSSAVA 618
P +N QP + + N + + + N ++ T +P ++ P ++ G + I+ ++ +
Sbjct: 2828 PNSN-QPMAINNNTNNNNNLNNNNNNNNTNTINMPMNIQPPSIIGMNINNNNINNNNNIN 2886
Query: 619 ALNSELNTN 627
N+ +N N
Sbjct: 2887 NNNNNINNN 2895
Score = 50 (22.7 bits), Expect = 2.9e-27, Sum P(6) = 2.9e-27
Identities = 24/123 (19%), Positives = 46/123 (37%)
Query: 1030 NSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDK 1089
N+ N N N+ + ++ ++ + ++ T P A +P
Sbjct: 2899 NNNNNNNNNNNNNNNNNNNNNNNNNINNNNPSTPTNITPPPQPLNANNTVTTVTPTPITT 2958
Query: 1090 SLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQE-KVTN 1148
+ T P PI+ +++S+ + P VK ++ EA A +A Q + N
Sbjct: 2959 T---TTTAATTPTTVSPPIKPVSKRSKKE--PTVKVKKIS-KKEAAAQAQAAAQAASLPN 3012
Query: 1149 TSS 1151
SS
Sbjct: 3013 QSS 3015
Score = 49 (22.3 bits), Expect = 1.5e-27, Sum P(6) = 1.5e-27
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 1109 EKHNEQSRNQNNPEV--KGEETPVSSEAPASTEAFEQEKVTNTSS 1151
EK NE+ ++++ + K +E + +E P + E + N ++
Sbjct: 1795 EKENERDKDKDKDQDQDKDQEMKIINEIPPKNDEDEDNNINNNNN 1839
Score = 49 (22.3 bits), Expect = 3.7e-27, Sum P(6) = 3.7e-27
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 1111 HNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDKTCSVTPA 1170
+N + N NN TP + P + NT + V +++ T + TP
Sbjct: 2914 NNNNNNNNNNINNNNPSTPTNITPPP-----QPLNANNTVTTVTPTPITTTTTTAATTPT 2968
Query: 1171 METAPGFDIPIEKGVEQSGTEIDAKVK 1197
+P PI+ ++S E KVK
Sbjct: 2969 T-VSP----PIKPVSKRSKKEPTVKVK 2990
Score = 47 (21.6 bits), Expect = 2.3e-27, Sum P(6) = 2.3e-27
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 2154 GVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESKEPEAKAFEPMDV-VDGA 2212
G V++ + P+S L++ S+K+ SS S SK K P D+ V G
Sbjct: 2169 GNVTVSGYSGSSTPSSSLSSSTSSISTSNKDKKKSSSSSSSSK----KRLVPDDIIVTGG 2224
Query: 2213 VALENTSE 2220
VA + S+
Sbjct: 2225 VANSDKSD 2232
Score = 46 (21.3 bits), Expect = 2.0e-27, Sum P(4) = 2.0e-27
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 2233 EDKTENEIEEDPVVNSVAVEESKGSEAD 2260
E E E E+ N + +E+ KG+E +
Sbjct: 1760 EKDNEKEREKQEKENEIEIEKEKGNEKE 1787
Score = 46 (21.3 bits), Expect = 1.2e-26, Sum P(6) = 1.2e-26
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 1698 VEREKSEELGLPSLSSATKEEKIDGSLDKDPDSN 1731
+E+EK E + KE + D DKD D +
Sbjct: 1778 IEKEKGNEKENEKENEKEKENERDKDKDKDQDQD 1811
Score = 44 (20.5 bits), Expect = 2.3e-27, Sum P(6) = 2.3e-27
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 1828 EEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSEDLATPPLSLANEE 1887
EE E D D A ++ + + E G + G G VM + + L LS N +
Sbjct: 1947 EEDGADDEADDDGDDEADDENEGNDFEGGGRGGRVGEGKKVMIEKKKPLLFFELSGINNQ 2006
Query: 1888 E 1888
E
Sbjct: 2007 E 2007
Score = 43 (20.2 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 340 QHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
Q + ++ ++ + ++Q +++ K+ + + D LKE EK
Sbjct: 1701 QQQKQKQQQQQQQQQQQQQQQQQQPKILKLDEKDKENLKENEKEK 1745
Score = 42 (19.8 bits), Expect = 1.3e-28, Sum P(5) = 1.3e-28
Identities = 30/138 (21%), Positives = 58/138 (42%)
Query: 673 SPPISDVSAGPESKSNLQSENNSGGLR--LSKSVSMGKQDALSQELSNKIQVQPCGVATS 730
SPP+ +S +K +L S+ G ++ +++ KQ +E K+ ++
Sbjct: 2067 SPPL--ISFEAFAKPSL-SKLKRGKIQKQVAQQYVYSKQHTKEKEKERKLLMKMKKEKDK 2123
Query: 731 ADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVL 790
+ A +++ + R +Q I+ ++ SSS S S + + + GNV
Sbjct: 2124 IEKAKQEEERRAKEKR----DQKIHSKKSNSSSSTLSNSNNNVINNSNSGNVTVSGYSGS 2179
Query: 791 SENSSSKGGVIPILALSN 808
S SSS ++ SN
Sbjct: 2180 STPSSSLSSSTSSISTSN 2197
Score = 42 (19.8 bits), Expect = 7.3e-27, Sum P(6) = 7.3e-27
Identities = 30/134 (22%), Positives = 52/134 (38%)
Query: 2081 NNIIDAEGGGNMRQTVPQDLGLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDESKGP 2140
NN+I+ GN+ + P SS I +K +K+S +S+ + P
Sbjct: 2160 NNVINNSNSGNVTVSGYSGSSTPSSSLSSSTSSISTSNK---DKKKSSSSSSSSKKRLVP 2216
Query: 2141 DAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSV--SQIESKEP 2198
D I GGV + +++D A E++ S + V S+ S K+
Sbjct: 2217 D------DIIVTGGVAN---SDKSDAELEDFAGSLEESLVSKQGGVPSTTTNSSTSRKKS 2267
Query: 2199 EAKAFEPMDVVDGA 2212
E F+ +G+
Sbjct: 2268 EYDLFDASSQDEGS 2281
Score = 41 (19.5 bits), Expect = 1.4e-26, Sum P(5) = 1.4e-26
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 1829 EKTEGSEKDPDSSFAAQEDPKESVVEAGDQMGVSLGGATVMEKSSED 1875
E +EK+ D+ ++ KE+ +E + G EK E+
Sbjct: 1752 ENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKENEKEKEN 1798
Score = 41 (19.5 bits), Expect = 3.7e-26, Sum P(6) = 3.7e-26
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 1699 EREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGS 1741
E+EK E + + KE+ + +K N + +E KG+
Sbjct: 1742 EKEKENENENENENENEKEKDNEKEREKQEKENEIEIEKEKGN 1784
Score = 40 (19.1 bits), Expect = 2.9e-27, Sum P(6) = 2.9e-27
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 338 DTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEK 384
D ++ ++ +E + E E E EK + E K E +EK
Sbjct: 1734 DKENLKENEKEKENENENENENENEKEKDNEKEREKQEKENEIEIEK 1780
Score = 40 (19.1 bits), Expect = 2.9e-26, Sum P(6) = 2.9e-26
Identities = 14/73 (19%), Positives = 28/73 (38%)
Query: 1260 NTSEDSSKMPLETPLIMKSTEGPSVSMKADDVADHSRETPILSGSPINSGTECSTVSVKT 1319
NT + P+ T +T +VS V+ S++ P + I+ +
Sbjct: 2946 NTVTTVTPTPITTTTTTAATTPTTVSPPIKPVSKRSKKEPTVKVKKISKKEAAAQAQAAA 3005
Query: 1320 DVGNHP-QNVEPT 1331
+ P Q+ +P+
Sbjct: 3006 QAASLPNQSSQPS 3018
Score = 38 (18.4 bits), Expect = 7.3e-29, Sum P(6) = 7.3e-29
Identities = 15/72 (20%), Positives = 24/72 (33%)
Query: 708 KQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPS 767
+Q Q+ + Q QP + + P Q Q ++ Q QP P + P
Sbjct: 2555 QQQQQQQQQPQQPQ-QPQQLQQPQQLQQPQQLQQPQQLQPQQLQQPPQQPQSQQLQQPPQ 2613
Query: 768 GSTPAQVPSMDL 779
Q P +
Sbjct: 2614 QIQQLQQPQAQI 2625
Score = 38 (18.4 bits), Expect = 5.8e-28, Sum P(6) = 5.8e-28
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 1811 PEKLPEHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVEAGDQ 1858
P++ P+ L P L P++ + + P + P+ ++ Q
Sbjct: 2567 PQQ-PQQLQQPQQLQQPQQLQQPQQLQPQQLQQPPQQPQSQQLQQPPQ 2613
Score = 37 (18.1 bits), Expect = 2.3e-26, Sum P(6) = 2.3e-26
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 1729 DSNLVVLEDSKGSIGDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQ 1788
D + LED GS+ + + Q GV P ++ S + ++ D SS+ + +++
Sbjct: 2229 DKSDAELEDFAGSLEESLVSKQGGV--PSTTTN-SSTSRKKSEYDL-FDASSQDEGSTNE 2284
Query: 1789 S 1789
S
Sbjct: 2285 S 2285
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 372 (136.0 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
Identities = 80/176 (45%), Positives = 108/176 (61%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL +LK HR L F+ MT++LDV+E +L + Y Y+RLDG T DR L
Sbjct: 1245 CGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQIL 1304
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
++FN DS +F+LS R+GG+G+NL ADTVI +D+DWNP +D Q Q R HRIGQ RD
Sbjct: 1305 TERFNT-DSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRD 1363
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAE-DRREYLESLLRE 233
V + RF + T+E + A K + N I G F + ++ R+ L S L E
Sbjct: 1364 VHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLLGSELPE 1419
Score = 64 (27.6 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQL 38
M R + ++ + S+ N +M+LR +CNHP L ++
Sbjct: 965 MSRAQTK-ATLASGNFMSIVNCLMQLRKVCNHPNLFEV 1001
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 376 (137.4 bits), Expect = 7.2e-30, Sum P(2) = 7.2e-30
Identities = 86/207 (41%), Positives = 124/207 (59%)
Query: 13 NSKGRSVHNSVMELRNICN-HPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPK 71
NS+GR + +S + L C H S + + +TLI GKL +LD LL +
Sbjct: 1120 NSQGRELVSSGLAL---CKPHGGWSSIVVPDKETLITD---------AGKLFVLDNLLTR 1167
Query: 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131
LKA HRVL +S MT+++D++E+Y+ +++RY+RLDG + R ++ F Q + F+
Sbjct: 1168 LKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADF-QTRADIFV 1226
Query: 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191
FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V V R T+E
Sbjct: 1227 FLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIE 1286
Query: 192 EQVRASAEHKLGVANQSITAGFFDNNT 218
E++ A K + I+ G F +T
Sbjct: 1287 ERILQRAREKSEIQRMVISGGNFKPDT 1313
Score = 59 (25.8 bits), Expect = 7.2e-30, Sum P(2) = 7.2e-30
Identities = 54/231 (23%), Positives = 79/231 (34%)
Query: 1131 SSEAPASTEAFEQ----EKVTN---TSSFVNLADLSSDDKTCSVTPA-----METAPGF- 1177
SS PA+T++ + +K N T+ A + DD S + A +ET F
Sbjct: 1342 SSPIPAATQSERKRRHPQKDVNMGGTTIAATSATQNPDDDVPSCSSAAKRIKLETEEDFI 1401
Query: 1178 DIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKT---DGDSVEKLEDT-- 1232
D+ I GT+ + + T +PG V E+ EN+ DGDS L
Sbjct: 1402 DVGITSSASSVGTDSNHPTLSQETYVPGATCVQQTEI-DSENEALVVDGDSPTMLGQNES 1460
Query: 1233 ---VDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGPSVSMKAD 1289
+DD S + + R G G+T + L P+V A
Sbjct: 1461 MNFLDDLSGISPMRRRHHPRGTRR-GRPRGSTRRGGGHGSIPRVLTPTQAATPAVPATAS 1519
Query: 1290 DVADHSRETPILSGSPINSGTECSTVSVKTDVGNHPQNVEPTSASPERSGP 1340
A + SP+ VS D P + E SP P
Sbjct: 1520 QAAAAGTGAAAGTSSPLPQ----QEVSGGGDNAGVPLHEEEYRTSPSGQSP 1566
Score = 51 (23.0 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 29/118 (24%), Positives = 43/118 (36%)
Query: 553 DDIPSPGPDPKTNEQPQSESLNPSGGESTATD-GNVSSIPTAPVPDSVSPSAVKGQSGTI 611
DD+PS K + E G S+A+ G S+ PT ++ P A Q I
Sbjct: 1380 DDVPSCSSAAKRIKLETEEDFIDVGITSSASSVGTDSNHPTLS-QETYVPGATCVQQTEI 1438
Query: 612 DPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPR---RRG 666
D + ++ + T L M+ + R T+ G PR RRG
Sbjct: 1439 DSENEALVVDGDSPTMLGQNESMNFLDDLSGISPMRRRHHPRGTRRG--RPRGSTRRG 1494
Score = 46 (21.3 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 32/127 (25%), Positives = 42/127 (33%)
Query: 499 PTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPA----ASDD 554
PT A P P + S +A T G +Q G G+ L S
Sbjct: 1506 PTQAATPAVPATASQAAAAGTGA---AAGTSSPLPQQEVSGGGDNAGVPLHEEEYRTSPS 1562
Query: 555 IPSPGPDPKTNE-QPQSESLNP-SGGESTATDGNVSS----IPTAPVPDSVSPSAVKGQS 608
SPG K +P+S++ P S G A +P PD PS+ S
Sbjct: 1563 GQSPGVSCKRGPGRPRSKTATPISRGTRGAPRARRPMGPLLVPLGRSPDDTPPSSSPATS 1622
Query: 609 GTIDPSS 615
P S
Sbjct: 1623 RAPSPLS 1629
Score = 38 (18.4 bits), Expect = 6.4e-26, Sum P(3) = 6.4e-26
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 1977 QLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDDESK 2015
Q V+ GG +T++ +E L + + I E+K
Sbjct: 1300 QRMVISGGNFKPDTLKPKEVVSLLLDDEEIEMKYRQEAK 1338
Score = 38 (18.4 bits), Expect = 6.4e-26, Sum P(3) = 6.4e-26
Identities = 23/100 (23%), Positives = 42/100 (42%)
Query: 1644 SLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVEREKS 1703
SL+L D+ E E+ R E ++ SP + + + + + + ++
Sbjct: 1321 SLLLDDE--EIEMKYR-QEAKLQSSSPIPAATQSERKRRHPQKDVNMGGTTIAATSATQN 1377
Query: 1704 EELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKGSIG 1743
+ +PS SSA K K L+ + D V + S S+G
Sbjct: 1378 PDDDVPSCSSAAKRIK----LETEEDFIDVGITSSASSVG 1413
Score = 37 (18.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 591 PTAPVPDSVSPSAVKGQSGTIDP 613
P++ S +PS + G G + P
Sbjct: 1615 PSSSPATSRAPSPLSGSHGAVGP 1637
Score = 37 (18.1 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1340 PQNSAVGFCDKSEIPSMEAEVAKCPS 1365
PQ G D + +P E E PS
Sbjct: 1537 PQQEVSGGGDNAGVPLHEEEYRTSPS 1562
Score = 37 (18.1 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 2127 SIASAVPLDESKGPDAEVSSQTAIEGGGVVSIPVPEE 2163
S A+A + G + + Q GG +P+ EE
Sbjct: 1519 SQAAAAGTGAAAGTSSPLPQQEVSGGGDNAGVPLHEE 1555
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 375 (137.1 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1132 GKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1191
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1192 ADF-QSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1250
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 218
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1251 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1289
Score = 63 (27.2 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 4 VEENLGSI--GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY-LPPIV 56
++ ++GS +S S+ N VM+ R +CNHP L + +E+ + P H L P +
Sbjct: 789 LQSSMGSAQQAHSTTSSLMNLVMQFRKVCNHPDLFE--RQEIRS--PFHMSLKPFI 840
Score = 50 (22.7 bits), Expect = 2.8e-29, Sum P(4) = 2.8e-29
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 589 SIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSE 623
S+PTA + S +P+ V + + S+ A NS+
Sbjct: 1522 SLPTALIRSSTTPTFVPAGTSSPQAKSSAVATNSQ 1556
Score = 49 (22.3 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 19/90 (21%), Positives = 37/90 (41%)
Query: 1109 EKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQE-KVTNTSSFVNL-ADLSSDDKTCS 1166
EK+ E+ R +++PE K ++ V+ P A SF+++ D +
Sbjct: 1333 EKYAERKRKEDDPESKRKKEGVNMVIPYVPSADNSNLSADGEDSFISVDMDSAIPSPFSE 1392
Query: 1167 VTPAMETAPGFDIPIEKGVEQSGTEIDAKV 1196
++ + E P IP ++ +D V
Sbjct: 1393 ISLSSELQPS-SIPADESSSDMLVIVDEPV 1421
Score = 45 (20.9 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 24/110 (21%), Positives = 45/110 (40%)
Query: 2124 EKESIASAVPL----DESK-GPDAEVSSQTAIEGGGVVSIPVPE---EADGPASFLAAEE 2175
+KE + +P D S D E S +++ + P E ++ S + A+E
Sbjct: 1350 KKEGVNMVIPYVPSADNSNLSADGE-DSFISVDMDSAIPSPFSEISLSSELQPSSIPADE 1408
Query: 2176 EKNECSD--KEPVGSSVSQIESKEPEAKAFEPMDVVDGAVALENTSEGMG 2223
++ EPV S+ + P + A D ++G + + +S G G
Sbjct: 1409 SSSDMLVIVDEPVSSAQQSRATNSPASIAGSVSDTMNGVSSQDISSPGRG 1458
Score = 45 (20.9 bits), Expect = 2.8e-29, Sum P(4) = 2.8e-29
Identities = 27/135 (20%), Positives = 57/135 (42%)
Query: 268 QRREEEMATWRKLIRGLGTDGEPLPP--LPSRLVTDDDLKALYEAMKIYDAPKTGVSPNV 325
QR +E+ R +I G + L P + S L+ D++L+ + +++ K + +
Sbjct: 1267 QRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELE---KKLRLRQEEKRQLEESS 1323
Query: 326 GVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQ-AESSDSPKLKEEGLEK 384
VK + + Y KR + E + +E + S+D+ L +G +
Sbjct: 1324 KVKERKRK-----REKYAERKRKED--DPESKRKKEGVNMVIPYVPSADNSNLSADGEDS 1376
Query: 385 SLPTVVSSSAPAVYS 399
+ + S+ P+ +S
Sbjct: 1377 FISVDMDSAIPSPFS 1391
Score = 44 (20.5 bits), Expect = 1.1e-28, Sum P(4) = 1.1e-28
Identities = 18/71 (25%), Positives = 29/71 (40%)
Query: 1009 QSSDDKTCSVTPTVETPPPG--FNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEA 1066
+SS D V V + NSP G ++ T N S + +P G + S+
Sbjct: 1408 ESSSDMLVIVDEPVSSAQQSRATNSPASIAGSVSDTMNGVSSQDISSPGRGRSNRSRG-- 1465
Query: 1067 LKPENKAQAGR 1077
+P+ AG+
Sbjct: 1466 -RPKGSGGAGK 1475
Score = 43 (20.2 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 900 TPTTGEAPRRRGKKQGSG 917
+P G + R RG+ +GSG
Sbjct: 1454 SPGRGRSNRSRGRPKGSG 1471
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 372 (136.0 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 73/141 (51%), Positives = 99/141 (70%)
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
KL LD LL KLK+ HRVL + MT+++D+ME+YLT++QY ++RLDG + DR L+
Sbjct: 1300 KLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVH 1359
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+ Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP +D QA RAHR+GQ R V
Sbjct: 1360 DW-QTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVT 1418
Query: 181 VLRFETVQTVEEQVRASAEHK 201
V R T+EE++R A+ K
Sbjct: 1419 VYRLLVRGTIEERMRDRAKQK 1439
Score = 60 (26.2 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 10 SIGNS-KGRSVHNSVMELRNICNHPYL 35
S NS +++ N+VM+ R +CNHP L
Sbjct: 990 SASNSGSDQNLINAVMQFRKVCNHPDL 1016
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 368 (134.6 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 74/156 (47%), Positives = 99/156 (63%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL +L + HR L F+ MT++LD++E +L YRY+RLDG T DR L
Sbjct: 1365 CGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLL 1424
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
+KFN+ D +F+LS R+GG+G+NL ADTVI +D+DWNP +D Q Q R HRIGQ RD
Sbjct: 1425 TEKFNR-DPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRD 1483
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 214
V + RF + T+E + A K + N I G F
Sbjct: 1484 VHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEF 1519
Score = 66 (28.3 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 3 RVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 49
+ +E L S GN S+ N +M+LR +CNHP L ++ +P+
Sbjct: 1109 KTKETLAS-GNFL--SIINCLMQLRKVCNHPDLFEVRPIVTSFAMPR 1152
Score = 53 (23.7 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 1218 ENKTDGDSVEKLEDTVDDHSLVKELIHRSPDHS-DMVIGNVPGNTSEDSSKM 1268
E TD + D V D ++ KE+ R+ D S D +GNV ++ ++
Sbjct: 1518 EFTTDYFGKFSVRDLVSDSNIGKEITDRTIDFSGDAKMGNVLAQAEDEEDRV 1569
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 394 (143.8 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 84/182 (46%), Positives = 115/182 (63%)
Query: 21 NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVL 80
N VMEL+ CNH L++ + D + L +++ GKL +LD+LL +LK HRVL
Sbjct: 674 NLVMELKKCCNHASLTRQYDHIYDDAQGR--LQQLLKSSGKLILLDKLLCRLKDKGHRVL 731
Query: 81 FFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140
FS M +LD++++YL +++ RLDG R +D +N S F FLLS RAGG
Sbjct: 732 IFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGG 791
Query: 141 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 200
+G+NL ADTVIIFD+DWNPQ DLQA +RAHRIGQ + V + R T +VEE++ A+
Sbjct: 792 LGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKR 851
Query: 201 KL 202
KL
Sbjct: 852 KL 853
Score = 50 (22.7 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 894 KRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAV 926
KRH P GE ++ K++ + S+ D A+
Sbjct: 1244 KRHTNNVPQEGEKKKKEKKEEKNSSSLKDQLAL 1276
Score = 39 (18.8 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 219 SAEDRREYLESLLRECKK 236
S ++ ++ +ESL CKK
Sbjct: 1060 STDEMKKLVESLSEACKK 1077
Score = 39 (18.8 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 787 KEVLSENSSSKGGVIPILALSNMKAVERVN-IQSFEEK 823
K VLS+N+++ G V P + A+ + ++ F+EK
Sbjct: 868 KTVLSKNATASGSV-PF-DKQELSAILKFGAVELFKEK 903
Score = 38 (18.4 bits), Expect = 4.2e-27, Sum P(4) = 4.2e-27
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1110 KHNEQSRNQNNP--EV-KGEETPVSSEAPASTE 1139
K E+S + P E+ K EET S + PA+ +
Sbjct: 1115 KQIERSHAELKPLHEILKSEETKTSFKPPANAK 1147
Score = 38 (18.4 bits), Expect = 4.2e-27, Sum P(4) = 4.2e-27
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 1806 DISIMPEKLPEHLDIPASLATPEEKTEGSEKDPDS 1840
D+ + PEK H + ++K + EK+ S
Sbjct: 1235 DVPVGPEKKKRHTNNVPQEGEKKKKEKKEEKNSSS 1269
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 389 (142.0 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 94/235 (40%), Positives = 138/235 (58%)
Query: 2 KRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGK 61
+R EE+ + ++ +++N +M+LR HP++ EE T P+ +V GK
Sbjct: 866 QRNEEDQ-PLKQTERHNLNNILMQLRKCLCHPFIFSKAIEE-RTDDPEVAHRNLVDAAGK 923
Query: 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 121
L++L+ +LPKL+A HRVL FS LDVMED+L + RLDG + ++ +ID
Sbjct: 924 LQLLELMLPKLQARGHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLEKQRMIDD 983
Query: 122 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 181
+N ++SP+F FLLS R+GGVG+NL ADTVII D D+NP D+QA +RAHRIGQK VLV
Sbjct: 984 YNAENSPYFAFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKNKVLV 1043
Query: 182 LRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKK 236
+ + EE++ K+ + + I D + +D E LES+LR K
Sbjct: 1044 FQLMIRGSAEEKIMQIGRKKMVLDHVLI-----DRMAAEDDDGEDLESILRHGAK 1093
Score = 51 (23.0 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 690 QSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQK-PAEQSVRVV 748
QS + + L+K G + L+Q K + P A+ P P + S+ +
Sbjct: 1347 QSNEDKHLVALAKKYVYGIKGDLAQRERRKSRKGPAADASINSTKTPTSSVPPKASI--L 1404
Query: 749 QSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEV 789
+ QP+ + T D +G PA PS G+ +D K +
Sbjct: 1405 PTGQPV-IDITEDQYESSNGQ-PA--PSGIEGSNTNDRKRI 1441
Score = 41 (19.5 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 332 EHLGALDTQHYGRGKRAREVRS 353
EH G HYG+ + ++S
Sbjct: 1313 EHCGLCGLAHYGQARTCPHLKS 1334
Score = 39 (18.8 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 758 ATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSK 797
A+ +S+ P+ S P + + G D E E+S+ +
Sbjct: 1385 ASINSTKTPTSSVPPKASILPTGQPVIDITEDQYESSNGQ 1424
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 378 (138.1 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
Identities = 91/202 (45%), Positives = 119/202 (58%)
Query: 14 SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKL 72
+K + N + +LR +HPYL + E V + ++ P+ L +L L L
Sbjct: 308 AKKVKLQNVLSQLRKCVDHPYLFE--GETVPFFLTLLFMTTPLKNL--ELAALSFLF--- 360
Query: 73 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132
A HRVL FS MT++LD+++DY+ ++ Y Y R+DG G +R I F QQ P F+F
Sbjct: 361 LARGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQ--PVFVF 418
Query: 133 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 192
LLS RAGGVG+NL AADTVI D+D+NPQ DLQA ARAHRIGQ + V V+R TVEE
Sbjct: 419 LLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEE 478
Query: 193 QVRASAEHKLGVANQSITAGFF 214
V A KL + N I G F
Sbjct: 479 IVYRKAASKLQLTNAIIEGGHF 500
Score = 41 (19.5 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 2163 EADGPASF-LAAEE-EKNECSDKEPVGSSVSQIESKEPEAKAFE 2204
E++ SF L +EE E + D+E S+ Q++ ++P++ A +
Sbjct: 679 ESNNYQSFCLPSEESEPEDLEDQEDESSA--QLDYEDPDSTAIK 720
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 376 (137.4 bits), Expect = 4.1e-29, Sum P(3) = 4.1e-29
Identities = 84/222 (37%), Positives = 129/222 (58%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1109 GKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1168
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1169 ADF-QNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1227
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL--RECKKE 237
V R T+EE++ A+ K + I+ G F +T +E + LL E +K+
Sbjct: 1228 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP--KEVVSLLLDDEELEKK 1285
Query: 238 EXXXXXXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRK 279
E + + +K+++E+E+ RK
Sbjct: 1286 LRQRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRK 1327
Score = 59 (25.8 bits), Expect = 4.1e-29, Sum P(3) = 4.1e-29
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 18 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 50
S+ N VM+ R +CNHP L E +T P H
Sbjct: 809 SLMNLVMQFRKVCNHPELF----ERQETWSPFH 837
Score = 46 (21.3 bits), Expect = 4.1e-29, Sum P(3) = 4.1e-29
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 1750 QSGVVVPENLSDFCQPSSSLAPWEAKID-GSS 1780
Q+ ++ P L+DF PSS+ +P + + G+S
Sbjct: 1501 QTAIIRPSGLADF-GPSSASSPLSSPLSKGNS 1531
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 358 (131.1 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 82/219 (37%), Positives = 122/219 (55%)
Query: 2 KRVEENLG-SIGNSKGRSVHNSVMELRNICNHPYL---SQLHAEEVDTLIPKHYLPPIVR 57
K ++NL I N K + N +M+LR I + +L LH E++ L +++
Sbjct: 551 KLYKKNLQMEISNKK---LQNMMMQLRQIIDSTFLFYFPYLHPEDLT-------LETLLK 600
Query: 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 117
GKL++L +L+P L + H+VL +S +LD++ED+ + R+DG + R
Sbjct: 601 TSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKD 660
Query: 118 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 177
++KFN IFLLS RA G+G+NL ADTV++FD+DWNPQVDLQA R HRIGQ+
Sbjct: 661 QLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQES 720
Query: 178 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDN 216
V+V R T+E + A +K + I G F+N
Sbjct: 721 PVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGKFNN 759
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 358 (131.1 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 76/152 (50%), Positives = 101/152 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GK LD LLPKLKA HRVL FS T +LD++E+YL +++ + RLDG T+ R LI
Sbjct: 652 GKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLI 711
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
FN DS F+FLLS +AGGVG+NL AADT +I D D+NP D QA+ R HR+GQ+R V
Sbjct: 712 TDFNGDDS-IFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPV 770
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITA 211
+ R + T+EE + +AE KL + + IT+
Sbjct: 771 TIYRLISESTIEEGILMAAEEKLKL-EKDITS 801
Score = 55 (24.4 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 7 NLGSIGNSKGRSVHNSVMELRNICNHPYL 35
N G + +S R+ +ME+R I NHP L
Sbjct: 558 NKGEVCSSSERAGIAIMMEMRRIANHPLL 586
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 371 (135.7 bits), Expect = 2.7e-28, Sum P(4) = 2.7e-28
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1098 GKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1157
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1158 ADF-QTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1216
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 218
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1217 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1255
Score = 62 (26.9 bits), Expect = 2.7e-28, Sum P(4) = 2.7e-28
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 4 VEENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 50
++ ++GS ++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 784 LQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 828
Score = 45 (20.9 bits), Expect = 2.7e-28, Sum P(4) = 2.7e-28
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1750 QSGVVVPENLSDFCQPSSSLAPWEAKID 1777
Q+ +V P L+DF PSS+ +P + ++
Sbjct: 1490 QTSIVRPAGLADF-GPSSASSPLSSPLN 1516
Score = 45 (20.9 bits), Expect = 2.7e-28, Sum P(4) = 2.7e-28
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 1009 QSSDDKTCSVTPTVETPPPG--FNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
+SS D V + P NSP G ++ T N S++ GH+ S+
Sbjct: 1372 ESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEVPAAGRGHSARSR 1428
Score = 40 (19.1 bits), Expect = 8.8e-28, Sum P(4) = 8.8e-28
Identities = 25/99 (25%), Positives = 35/99 (35%)
Query: 514 SACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESL 573
SA PS P + +G +P LV+ DD S P + P S +
Sbjct: 1348 SAMPS-PFSEISISSELHTGS-IPPDESSSDMLVIV---DDPASSAPQSRATNSPASIT- 1401
Query: 574 NPSGGESTATDG-NVSSIPTAPVPDSV-SPSAVKGQSGT 610
G S +G ++ +P A S S KG T
Sbjct: 1402 ---GSVSDTVNGISIQEVPAAGRGHSARSRGRPKGSGST 1437
Score = 39 (18.8 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 586 NVSSIPTAPVPDSVSPSAVKGQSGTID--PSSAVAALNSELN 625
NVS +A P + S V+ +G D PSSA + L+S LN
Sbjct: 1478 NVSKGISASSP--LQTSIVR-PAGLADFGPSSASSPLSSPLN 1516
Score = 39 (18.8 bits), Expect = 1.1e-27, Sum P(4) = 1.1e-27
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 904 GEAPRRRGKKQGSG 917
G + R RG+ +GSG
Sbjct: 1422 GHSARSRGRPKGSG 1435
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 353 (129.3 bits), Expect = 6.1e-28, Sum P(2) = 6.1e-28
Identities = 68/142 (47%), Positives = 95/142 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL LK HR+L + MTR++ + E+YL +K Y+Y+RLDG T+ R ++
Sbjct: 1236 GKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREMV 1295
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
+ Q + FIF+LS RAGG+G+NL +ADTVI +D+DWNP +D QA RAHRIGQ + V
Sbjct: 1296 QAW-QTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQV 1354
Query: 180 LVLRFETVQTVEEQVRASAEHK 201
V R T T+E+++ A+ K
Sbjct: 1355 KVFRLVTRNTIEQKILERAKEK 1376
Score = 62 (26.9 bits), Expect = 6.1e-28, Sum P(2) = 6.1e-28
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 8 LGSIGNSKGRSVHNSVMELRNICNHPYL 35
L S S S+ N VM+ R +CNHP L
Sbjct: 947 LESNSTSSDSSLANLVMQFRKVCNHPDL 974
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 358 (131.1 bits), Expect = 1.8e-27, Sum P(4) = 1.8e-27
Identities = 75/169 (44%), Positives = 107/169 (63%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL +L HR L F+ M+++LDV++ +L+ Y+Y RLDG T R A+
Sbjct: 1187 CGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAM 1246
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
+++FN D F F+LS R+GGVGVNL ADTVI +D+DWNP +D QAQ R HRIGQ R+
Sbjct: 1247 MERFNA-DPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRN 1305
Query: 179 VLVLRFETVQTVEEQV--RASAEHKLG---VANQSITAGFFDNNTSAED 222
V + R + +T+EE + +A+ + +LG + T FF + S D
Sbjct: 1306 VSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRD 1354
Score = 69 (29.3 bits), Expect = 1.8e-27, Sum P(4) = 1.8e-27
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 2 KRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 35
+ +ENL S GN SV N VM+LR CNHP L
Sbjct: 816 RSTKENLKS-GNMM--SVLNIVMQLRKCCNHPNL 846
Score = 59 (25.8 bits), Expect = 1.8e-27, Sum P(4) = 1.8e-27
Identities = 32/110 (29%), Positives = 50/110 (45%)
Query: 1062 SKTEALKPENKAQAGRIE-NIANSSPDDKSLPMVPNL---ETAPPGF-DI-----PIEKH 1111
+K E N A+ E N+ N+ D+KSLP + NL E A + ++ PIE++
Sbjct: 1383 AKCEDEADVNAAKIAVAEANVDNAEFDEKSLPPMSNLQGDEEADEKYMELIQQLKPIERY 1442
Query: 1112 NEQS-RNQNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSS 1160
Q PE EE +EA + E +K N ++ ++L D S
Sbjct: 1443 AINFLETQYKPEF--EEECKEAEALIDQKREEWDKNLNDTAVIDLDDSDS 1490
Score = 47 (21.6 bits), Expect = 1.9e-26, Sum P(4) = 1.9e-26
Identities = 19/95 (20%), Positives = 35/95 (36%)
Query: 675 PISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVA 734
PI + A + + S+ G + V G Q Q+ +Q + A ++V
Sbjct: 2023 PIRQIGAASSHQHDQGSQGPGGKPQAYHLVQQGSQQQQQQQQQATLQRRNAAAAAGSNVQ 2082
Query: 735 G-PDQKPAEQSVRVVQSNQPINLPATHDSSSQPSG 768
Q+ +QS + Q + + SS+ G
Sbjct: 2083 FIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQG 2117
Score = 47 (21.6 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 680 SAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSAD----VAG 735
S G S+ NLQ+ +NS +V Q+ + + I ++ G A+S G
Sbjct: 1985 STGLGSQQNLQNSHNS---EQRNNVQNMHQNQYNSSQNPPIPIRQIGAASSHQHDQGSQG 2041
Query: 736 PDQKPAEQSVRVVQ 749
P KP Q+ +VQ
Sbjct: 2042 PGGKP--QAYHLVQ 2053
Score = 41 (19.5 bits), Expect = 1.9e-26, Sum P(4) = 1.9e-26
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 1012 DDKTCSVTPTVETPPPGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPEN 1071
D++ +V V PP G ++ P L + S++ P S H + +A P++
Sbjct: 2315 DNQAPTVAQVVVAPPQGMQQASQGPPVLH-MQRAVSMQ---MPTSHHHQGQQ-QA-PPQS 2368
Query: 1072 KAQAGRIENIANSSPDDKSLPMVPNLETAPP 1102
QA + +P S P + PP
Sbjct: 2369 SQQASQ------QAPTSDSGTSAPPRQAPPP 2393
Score = 40 (19.1 bits), Expect = 2.5e-25, Sum P(4) = 2.5e-25
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1356 MEAEVAKCPSDAIVN 1370
ME +AKC +A VN
Sbjct: 1378 MEVAMAKCEDEADVN 1392
Score = 39 (18.8 bits), Expect = 1.8e-27, Sum P(4) = 1.8e-27
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 1301 LSGSPINSGTECSTVSVKTDVGNHPQNVEPTSASP 1335
L G P+ G + +V V PQ ++ S P
Sbjct: 2305 LVGRPLQRGVDNQAPTVAQVVVAPPQGMQQASQGP 2339
Score = 38 (18.4 bits), Expect = 4.0e-24, Sum P(5) = 4.0e-24
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 1052 HTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDKSLPMVP 1095
H S L S+ N Q ++N+ + + P +P
Sbjct: 1980 HLQSSSTGLGSQQNLQNSHNSEQRNNVQNMHQNQYNSSQNPPIP 2023
Score = 37 (18.1 bits), Expect = 2.9e-27, Sum P(4) = 2.9e-27
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 1533 DKKADCKMEPDCL 1545
D D +ME DCL
Sbjct: 1534 DADFDLRMEDDCL 1546
Score = 37 (18.1 bits), Expect = 2.9e-27, Sum P(4) = 2.9e-27
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 1279 TEGPSVSMKADDVADHSRETPILSGS--PINSGTECSTV 1315
TE S SM DD + ++ P L+ + P + T +TV
Sbjct: 1623 TEHSSFSM--DDTSQDAKIEPSLTENQQPTTTATTTTTV 1659
Score = 37 (18.1 bits), Expect = 4.0e-24, Sum P(5) = 4.0e-24
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 918 PSIPDGSAVFDAKL 931
PS PD A FD ++
Sbjct: 1528 PSPPDSDADFDLRM 1541
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 371 (135.7 bits), Expect = 2.8e-27, Sum P(5) = 2.8e-27
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1104 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1163
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1164 ADF-QTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1222
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 218
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1223 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1261
Score = 62 (26.9 bits), Expect = 2.8e-27, Sum P(5) = 2.8e-27
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 4 VEENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 50
++ ++GS ++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 790 LQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 834
Score = 45 (20.9 bits), Expect = 2.8e-27, Sum P(5) = 2.8e-27
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1750 QSGVVVPENLSDFCQPSSSLAPWEAKID 1777
Q+ +V P L+DF PSS+ +P + ++
Sbjct: 1496 QTSIVRPAGLADF-GPSSASSPLSSPLN 1522
Score = 45 (20.9 bits), Expect = 2.8e-27, Sum P(5) = 2.8e-27
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 1009 QSSDDKTCSVTPTVETPPPG--FNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
+SS D V + P NSP G ++ T N S++ GH+ S+
Sbjct: 1378 ESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEVPAAGRGHSARSR 1434
Score = 40 (19.1 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 25/99 (25%), Positives = 35/99 (35%)
Query: 514 SACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESL 573
SA PS P + +G +P LV+ DD S P + P S +
Sbjct: 1354 SAMPS-PFSEISISSELHTGS-IPPDESSSDMLVIV---DDPASSAPQSRATNSPASIT- 1407
Query: 574 NPSGGESTATDG-NVSSIPTAPVPDSV-SPSAVKGQSGT 610
G S +G ++ +P A S S KG T
Sbjct: 1408 ---GSVSDTVNGISIQEVPAAGRGHSARSRGRPKGSGST 1443
Score = 39 (18.8 bits), Expect = 7.5e-27, Sum P(4) = 7.5e-27
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 586 NVSSIPTAPVPDSVSPSAVKGQSGTID--PSSAVAALNSELN 625
NVS +A P + S V+ +G D PSSA + L+S LN
Sbjct: 1484 NVSKGISASSP--LQTSIVR-PAGLADFGPSSASSPLSSPLN 1522
Score = 39 (18.8 bits), Expect = 1.1e-26, Sum P(5) = 1.1e-26
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 904 GEAPRRRGKKQGSG 917
G + R RG+ +GSG
Sbjct: 1428 GHSARSRGRPKGSG 1441
Score = 37 (18.1 bits), Expect = 2.8e-27, Sum P(5) = 2.8e-27
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 346 KRAREV--RSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS 392
KR +E R E + E++ + + E K ++EG+ +P V S+
Sbjct: 1288 KRQQEESNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPFVPSA 1336
Score = 37 (18.1 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 29/116 (25%), Positives = 46/116 (39%)
Query: 1983 GGGVVAETVQEEEKTELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEELG 2042
G +V V + + LS + SVD P E + ++ G +P P+E
Sbjct: 1325 GVNLVIPFVPSADNSNLSADGDDSFISVDSAMPSPFSEISISSELH-TGSIP---PDE-- 1378
Query: 2043 LPSSPMVVXXXXXXXXXXXXPSASSIPRGES-KGPDAEANNIIDAEGGGNMRQTVP 2097
SS M+V P ASS P+ + P + ++ D G ++ Q VP
Sbjct: 1379 -SSSDMLVIVDD--------P-ASSAPQSRATNSPASITGSVSDTVNGISI-QEVP 1423
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 371 (135.7 bits), Expect = 2.9e-27, Sum P(5) = 2.9e-27
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1111 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1170
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1171 ADF-QTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1229
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 218
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1230 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1268
Score = 60 (26.2 bits), Expect = 2.9e-27, Sum P(5) = 2.9e-27
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 4 VEENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 50
++ ++GS ++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 797 LQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 841
Score = 46 (21.3 bits), Expect = 2.9e-27, Sum P(5) = 2.9e-27
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 1009 QSSDDKTCSVTPTVETPPPG--FNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
+SS D V + P NSP G ++ T N S++ GH+ S+
Sbjct: 1385 ESSSDMLVIVDDPASSAPQSRATNSPASMTGSVSDTVNGISIQEMPAAGRGHSARSR 1441
Score = 45 (20.9 bits), Expect = 2.9e-27, Sum P(5) = 2.9e-27
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 1750 QSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSV 1790
Q+ +V P L+DF PSS+ +P + + G P + +S+
Sbjct: 1503 QTSLVRPAGLADF-GPSSASSPLSSPL-GKGNNLPGTPKSL 1541
Score = 39 (18.8 bits), Expect = 1.5e-26, Sum P(5) = 1.5e-26
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 904 GEAPRRRGKKQGSG 917
G + R RG+ +GSG
Sbjct: 1435 GHSARSRGRPKGSG 1448
Score = 38 (18.4 bits), Expect = 2.9e-27, Sum P(5) = 2.9e-27
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 337 LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLE 383
LD + + R R+ +++ T E+ + E K KE+ L+
Sbjct: 1279 LDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELD 1325
Score = 38 (18.4 bits), Expect = 2.9e-27, Sum P(5) = 2.9e-27
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 346 KRAREV--RSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS 392
KR +E R E + E++ + + E K ++EG+ +P V S+
Sbjct: 1295 KRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGMNLVIPFVPSA 1343
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 372 (136.0 bits), Expect = 2.9e-27, Sum P(4) = 2.9e-27
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1101 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1160
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1161 ADF-QNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1219
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 218
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1220 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1258
Score = 62 (26.9 bits), Expect = 2.9e-27, Sum P(4) = 2.9e-27
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 4 VEENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 50
++ ++GS ++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 788 LQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 832
Score = 45 (20.9 bits), Expect = 3.4e-27, Sum P(5) = 3.4e-27
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 1009 QSSDDKTCSVTPTVETPPPG--FNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
+SS D V + P NSP G ++ T N S++ GH+ S+
Sbjct: 1375 ESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSR 1431
Score = 42 (19.8 bits), Expect = 3.4e-27, Sum P(5) = 3.4e-27
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1750 QSGVVVPENLSDFCQPSSSLAP 1771
Q+ +V P L+DF PSS+ +P
Sbjct: 1493 QTSLVRPAGLADF-GPSSASSP 1513
Score = 41 (19.5 bits), Expect = 2.9e-27, Sum P(4) = 2.9e-27
Identities = 31/129 (24%), Positives = 44/129 (34%)
Query: 453 GTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQH---VMVGIAPSSQPTTAFVPVAPG 509
G K T S +A A A + V GI+ SS T+ V A
Sbjct: 1443 GAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRPAGL 1502
Query: 510 SQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQ 569
+ + S+P+ + G VP G L + + S PD +Q
Sbjct: 1503 ADFGPSSASSPLSSP-----LSKGNNVP---GNPKNLHMTS------SLAPDSLVRKQ-- 1546
Query: 570 SESLNPSGG 578
+ NPSGG
Sbjct: 1547 GKGTNPSGG 1555
Score = 39 (18.8 bits), Expect = 1.4e-26, Sum P(5) = 1.4e-26
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 904 GEAPRRRGKKQGSG 917
G + R RG+ +GSG
Sbjct: 1425 GHSARSRGRPKGSG 1438
Score = 38 (18.4 bits), Expect = 2.9e-27, Sum P(4) = 2.9e-27
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 337 LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLE 383
LD + + R R+ +++ T E+ + E K KE+ L+
Sbjct: 1269 LDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELD 1315
Score = 37 (18.1 bits), Expect = 4.3e-27, Sum P(5) = 4.3e-27
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 346 KRAREV--RSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS 392
KR +E R E + E++ + + E K ++EG+ +P V S+
Sbjct: 1285 KRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPFVPSA 1333
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 372 (136.0 bits), Expect = 3.7e-27, Sum P(4) = 3.7e-27
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1105 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1164
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1165 ADF-QNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1223
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 218
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1224 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1262
Score = 60 (26.2 bits), Expect = 3.7e-27, Sum P(4) = 3.7e-27
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 4 VEENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 50
++ ++GS ++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 791 LQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 835
Score = 45 (20.9 bits), Expect = 5.5e-27, Sum P(5) = 5.5e-27
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 1009 QSSDDKTCSVTPTVETPPPG--FNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
+SS D V + P NSP G ++ T N S++ GH+ S+
Sbjct: 1379 ESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSR 1435
Score = 42 (19.8 bits), Expect = 3.7e-27, Sum P(4) = 3.7e-27
Identities = 32/129 (24%), Positives = 44/129 (34%)
Query: 453 GTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQH---VMVGIAPSSQPTTAFVPVAPG 509
G K T S +A A A + V GI+ SS T+ V A
Sbjct: 1447 GAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRPAGL 1506
Query: 510 SQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQ 569
+ + S+P+ + G VP G L L + S PD +Q
Sbjct: 1507 ADFGPSSASSPLSSP-----LSKGNNVP---GTPKSLHLTS------SLAPDSLVRKQ-- 1550
Query: 570 SESLNPSGG 578
+ NPSGG
Sbjct: 1551 GKGTNPSGG 1559
Score = 42 (19.8 bits), Expect = 5.5e-27, Sum P(5) = 5.5e-27
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1750 QSGVVVPENLSDFCQPSSSLAP 1771
Q+ +V P L+DF PSS+ +P
Sbjct: 1497 QTSLVRPAGLADF-GPSSASSP 1517
Score = 39 (18.8 bits), Expect = 2.2e-26, Sum P(5) = 2.2e-26
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 904 GEAPRRRGKKQGSG 917
G + R RG+ +GSG
Sbjct: 1429 GHSARSRGRPKGSG 1442
Score = 38 (18.4 bits), Expect = 3.7e-27, Sum P(4) = 3.7e-27
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 337 LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLE 383
LD + + R R+ +++ T E+ + E K KE+ L+
Sbjct: 1273 LDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELD 1319
Score = 37 (18.1 bits), Expect = 7.0e-27, Sum P(5) = 7.0e-27
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 346 KRAREV--RSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS 392
KR +E R E + E++ + + E K ++EG+ +P V S+
Sbjct: 1289 KRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPFVPSA 1337
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 372 (136.0 bits), Expect = 3.8e-27, Sum P(4) = 3.8e-27
Identities = 73/159 (45%), Positives = 106/159 (66%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GKL LD LL +LK+ HRVL +S MTR++D++E+Y+ ++++ Y+RLDG + +R ++
Sbjct: 1111 GKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMV 1170
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
F Q + F+FLLS RAGG+G+NL AADTVI +D+DWNP VD QA RAHR+GQ + V
Sbjct: 1171 ADF-QNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1229
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNT 218
V R T+EE++ A+ K + I+ G F +T
Sbjct: 1230 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT 1268
Score = 60 (26.2 bits), Expect = 3.8e-27, Sum P(4) = 3.8e-27
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 4 VEENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 50
++ ++GS ++ S+ N VM+ R +CNHP L E +T P H
Sbjct: 797 LQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELF----ERQETWSPFH 841
Score = 45 (20.9 bits), Expect = 5.7e-27, Sum P(5) = 5.7e-27
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 1009 QSSDDKTCSVTPTVETPPPG--FNSPNENPGELTGTKNDASVRGDHTPVSGHTLASK 1063
+SS D V + P NSP G ++ T N S++ GH+ S+
Sbjct: 1385 ESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSR 1441
Score = 42 (19.8 bits), Expect = 3.8e-27, Sum P(4) = 3.8e-27
Identities = 32/129 (24%), Positives = 44/129 (34%)
Query: 453 GTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQH---VMVGIAPSSQPTTAFVPVAPG 509
G K T S +A A A + V GI+ SS T+ V A
Sbjct: 1453 GAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRPAGL 1512
Query: 510 SQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQ 569
+ + S+P+ + G VP G L L + S PD +Q
Sbjct: 1513 ADFGPSSASSPLSSP-----LSKGNNVP---GTPKSLHLTS------SLAPDSLVRKQ-- 1556
Query: 570 SESLNPSGG 578
+ NPSGG
Sbjct: 1557 GKGTNPSGG 1565
Score = 42 (19.8 bits), Expect = 5.7e-27, Sum P(5) = 5.7e-27
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1750 QSGVVVPENLSDFCQPSSSLAP 1771
Q+ +V P L+DF PSS+ +P
Sbjct: 1503 QTSLVRPAGLADF-GPSSASSP 1523
Score = 39 (18.8 bits), Expect = 2.3e-26, Sum P(5) = 2.3e-26
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 904 GEAPRRRGKKQGSG 917
G + R RG+ +GSG
Sbjct: 1435 GHSARSRGRPKGSG 1448
Score = 38 (18.4 bits), Expect = 3.8e-27, Sum P(4) = 3.8e-27
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 346 KRAREV--RSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSS 392
KR +E R E + E++ + + E K ++EG+ +P V S+
Sbjct: 1295 KRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGINLVIPFVPSA 1343
Score = 38 (18.4 bits), Expect = 5.7e-27, Sum P(5) = 5.7e-27
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 337 LDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLE 383
LD + + R R+ +++ T E+ + E K KE+ L+
Sbjct: 1279 LDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELD 1325
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 365 (133.5 bits), Expect = 3.5e-26, Sum P(4) = 3.5e-26
Identities = 95/255 (37%), Positives = 133/255 (52%)
Query: 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 118
CGKL+ L LL KLK HR L F+ MT++LDV+E ++ Y Y+RLDG T +R L
Sbjct: 1074 CGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTL 1133
Query: 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178
+ +FN F+F+LS R+GGVG+NL ADTVI +D+DWNP +D QAQ R HRIGQ R+
Sbjct: 1134 MQRFNTNPK-IFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1192
Query: 179 VLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 238
V + R + T+EE + A K + N I G + NT + + +E L K
Sbjct: 1193 VHIYRLISESTIEENILKKANQKRVLDNLVIQNGEY--NTEFFKKLDPME--LFSGHKAL 1248
Query: 239 XXXXXXXXXXXXXXXRSESEIDVFESVDKQRREE-EMATWRKLIRGLGTDG-----EPLP 292
S DV E+ KQ +E + +++ + D EP+
Sbjct: 1249 TTKDEKETSKHCGADIPLSNADV-EAALKQAEDEADYMALKRVEQEEAVDNQEFTEEPVE 1307
Query: 293 -PLPSRLVTDDDLKA 306
P LV +DD+KA
Sbjct: 1308 RPEDDELVNEDDIKA 1322
Score = 54 (24.1 bits), Expect = 3.5e-26, Sum P(4) = 3.5e-26
Identities = 37/146 (25%), Positives = 65/146 (44%)
Query: 1111 HNEQSRNQNNPEVKGEETPVSSE---APASTEAFEQEKVTNTSSFVNLADLSSDDKTCSV 1167
H E+ + + E+ E P+ E A +TEA+ Q+ V + + DL ++ +
Sbjct: 1428 HIEKYKEEMEAEIDDGEEPLVYEKWDADFATEAYRQQ-VEVLAQHQLMEDLENEARE--- 1483
Query: 1168 TPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVAGIEVFKPENKTDGDSVE 1227
A E A ++ + + +S + K K K +++ G E+K SV
Sbjct: 1484 REAAEVA---EMVLTQN--ESAHVLKPKKKKKAKKAKYKSLKKGS--LAAESK-HVKSVV 1535
Query: 1228 KLEDTVDDHSLVKELIHRSPDHSDMV 1253
K+ED+ DD + +E + S SDMV
Sbjct: 1536 KIEDSTDDDN--EEFGYVSSSDSDMV 1559
Score = 53 (23.7 bits), Expect = 3.5e-26, Sum P(4) = 3.5e-26
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 23 VMELRNICNHPYL 35
+M+LR +CNHP L
Sbjct: 812 IMQLRKVCNHPDL 824
Score = 53 (23.7 bits), Expect = 4.4e-26, Sum P(4) = 4.4e-26
Identities = 32/118 (27%), Positives = 44/118 (37%)
Query: 685 SKSNLQSEN--NSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAE 742
S+S LQ N GL L+ G D+L+Q I + G + V P +
Sbjct: 1857 SRSRLQETQPINKLGLELTLEFPRGNDDSLNQ-FPPMISLSIDGSDSLNYVNEPPGEDVL 1915
Query: 743 QSVRVVQSNQPINLP--ATHDSSSQPSGSTPAQVPSMDLGNVASDT-KEVLSENSSSK 797
+ RV N+ N DS S + PA G A K LS + S+K
Sbjct: 1916 KGSRVAAENRYRNAANACIEDSFGWASNTFPANDLKSRTGTKAQSLGKHKLSASDSAK 1973
Score = 42 (19.8 bits), Expect = 5.8e-25, Sum P(4) = 5.8e-25
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 1956 DPVNSSVTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPI 2006
DP+ +E+ GFE + + H+ E +EE + E+ ++P+
Sbjct: 1405 DPIIVEAAMENEAGFEEKEWELDHI--------EKYKEEMEAEIDDGEEPL 1447
Score = 42 (19.8 bits), Expect = 5.8e-25, Sum P(4) = 5.8e-25
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 734 AGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPA--QVPSM-DLGNVASDTKEVL 790
+GP Q S +Q QPIN + P G+ + Q P M L SD+ +
Sbjct: 1847 SGPSQPDNTISRSRLQETQPINKLGLELTLEFPRGNDDSLNQFPPMISLSIDGSDSLNYV 1906
Query: 791 SE 792
+E
Sbjct: 1907 NE 1908
Score = 37 (18.1 bits), Expect = 3.5e-26, Sum P(4) = 3.5e-26
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 5 EENLGSIGNSKGRSVHN 21
++NL S+G G +N
Sbjct: 297 QDNLASVGQDHGEDKNN 313
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 335 (123.0 bits), Expect = 3.5e-26, P = 3.5e-26
Identities = 86/204 (42%), Positives = 109/204 (53%)
Query: 32 HPYLSQLHAEEVD-TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLD 90
H L Q + TL KH V L K L LLP +K + HRVL FS T +LD
Sbjct: 564 HQLLFQYGVNDTKGTLSDKH-----VMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLD 618
Query: 91 VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 150
++E L Y RLDG T DR ++D FN D F LLS RAGG G+NL ADT
Sbjct: 619 ILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNN-DKSIFACLLSTRAGGQGLNLTGADT 677
Query: 151 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 210
VII D D+NPQ+D QA+ R HRIGQ + V + R T TV+E + A+ KL + +
Sbjct: 678 VIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLE 737
Query: 211 AGFF-DNNTSAEDRR--EYLESLL 231
+G D+N ++ E L SLL
Sbjct: 738 SGVHVDDNGDTPEKTMGEILASLL 761
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 325 (119.5 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 70/152 (46%), Positives = 98/152 (64%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GK +L+RLL LK RV+ FS T +LD++E +L Q+RY+RLDG T DR LI
Sbjct: 791 GKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLI 850
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
D+FN D F+FLLS +AGG+G+NL +A+ VI+ D D NP D QA+ R HR+GQ R+V
Sbjct: 851 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTREV 909
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITA 211
V++ + T+EE + + KL + Q +TA
Sbjct: 910 KVIKLISKGTIEESMLKMNQQKLKL-EQDMTA 940
Score = 67 (28.6 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 46
GN K + N++M+LR + NHP L + H D L
Sbjct: 701 GNEKNSDMGNAMMQLRKMANHPLLHR-HYYTADKL 734
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 324 (119.1 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 72/179 (40%), Positives = 111/179 (62%)
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GK+ +L LLPK+K R+L FS T++LD++E L + Y+RLDG T R +I
Sbjct: 924 GKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDII 983
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
D+F++++ +FLLS +AGG G+NL A+ VI++D +NP DLQA+ RAHR+GQ R+V
Sbjct: 984 DQFHKEED-VTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREV 1042
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE 238
V+R T T+EE ++ A KL + + S+++ +DR E E L+++ EE
Sbjct: 1043 TVIRLITDNTIEEYIQKLANTKLAL-DMSLSS-------DGKDREEIGERLVQDMLDEE 1093
Score = 85 (35.0 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 46/198 (23%), Positives = 80/198 (40%)
Query: 1030 NSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKAQAGRIENIANSSPDDK 1089
N+ N E+TG ++D + + S T A +T P +Q +E + D+K
Sbjct: 1094 NNGNNTKPEITGNESDGEFKVSSSNNSKQTDAEETNTGVPLEGSQPNSVEKTDLADGDEK 1153
Query: 1090 SLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEA--PASTEAFEQEKVT 1147
+ N++T + E N++ R +KGE S A P+S + E+ +
Sbjct: 1154 A-----NIKTEMKSETV--EGDNKELRET----MKGENVQTDSNAAVPSSKSSTEEPNES 1202
Query: 1148 NTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDA---KVKWKNTPLP 1204
S ++L D + V +E D+ + + EQ ID K + + + P
Sbjct: 1203 VLSGHLDL-----DTEASPVVSTIEKTTKGDVSVTE--EQQSANIDGQLEKPEIEESKKP 1255
Query: 1205 G--EAIVAGIEVFKPENK 1220
+ IE KP+NK
Sbjct: 1256 DVLNQVSLSIEEEKPKNK 1273
Score = 71 (30.1 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 55/225 (24%), Positives = 92/225 (40%)
Query: 1640 AFGSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELV-DEAGDHMGVSHSPVHVV 1698
A SL K E EIG+R+ + +D + + E+ +E+ VS S
Sbjct: 1066 ALDMSLSSDGKDRE-EIGERLVQDMLD--EENNGNNTKPEITGNESDGEFKVSSSNNSKQ 1122
Query: 1699 EREKSEELGLPSLSSATKE-EKIDGSLDKDPDSNLVVLEDSKGSIGDQMDCCQ------- 1750
+ G+P S EK D + D D +N+ S+ GD + +
Sbjct: 1123 TDAEETNTGVPLEGSQPNSVEKTDLA-DGDEKANIKTEMKSETVEGDNKELRETMKGENV 1181
Query: 1751 ---SGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAEAGDQMDI 1807
S VP + S +P+ S+ +D +E PV S ++ + +K V+ +Q
Sbjct: 1182 QTDSNAAVPSSKSSTEEPNESVLSGHLDLD--TEASPVVS-TIEKTTKGDVSVTEEQQSA 1238
Query: 1808 SI-----MPE----KLPEHLDIPASLATPEEKTEGSEKDPDSSFA 1843
+I PE K P+ L+ SL+ EEK + E + D++ A
Sbjct: 1239 NIDGQLEKPEIEESKKPDVLN-QVSLSIEEEKPKNKESEVDNNAA 1282
Score = 63 (27.2 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 41/185 (22%), Positives = 76/185 (41%)
Query: 2079 EANNIIDAEGGGNMRQTVPQDL--GLPLSSSDVEEEKIEGFSKPVGSEKESIASAVPLDE 2136
E++ N +QT ++ G+PL S + +E G EK +I + + +
Sbjct: 1107 ESDGEFKVSSSNNSKQTDAEETNTGVPLEGS--QPNSVEKTDLADGDEKANIKTEMKSET 1164
Query: 2137 SKGPDAEVSSQTAIEGGGVVSIPVPEEADGPASFLAAEEEKNECSDKEPVGSSVSQIESK 2196
+G + E+ + ++G V + A P+S ++ EE NE V S ++++
Sbjct: 1165 VEGDNKEL--RETMKGENVQT---DSNAAVPSS-KSSTEEPNES-----VLSGHLDLDTE 1213
Query: 2197 -EPEAKAFEPMDVVDGAVALENTSEGMGGPSPPLVIAEDKTENEIEEDPVVNSVAVEESK 2255
P E D +V E S + G I E K + + + V S+ E+ K
Sbjct: 1214 ASPVVSTIEKTTKGDVSVTEEQQSANIDGQLEKPEIEESKKPDVLNQ--VSLSIEEEKPK 1271
Query: 2256 GSEAD 2260
E++
Sbjct: 1272 NKESE 1276
Score = 60 (26.2 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 30/144 (20%), Positives = 60/144 (41%)
Query: 1113 EQSRNQNNPEVKGEETPVSSEAPASTEAFEQE-KVTNTS--------SFVNLADLSSDDK 1163
E + N PE+ G E+ + +S + + + + TNT + V DL+ D+
Sbjct: 1093 ENNGNNTKPEITGNESDGEFKVSSSNNSKQTDAEETNTGVPLEGSQPNSVEKTDLADGDE 1152
Query: 1164 TCSVTPAM--ETAPGFDIPIEKGVEQSGTEIDAKV----KWKNTPLPGEAIVAGIEVFKP 1217
++ M ET G + + + ++ + D+ +T P E++++G
Sbjct: 1153 KANIKTEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNESVLSGHLDLDT 1212
Query: 1218 ENKTDGDSVEKLEDTVDDHSLVKE 1241
E ++EK T D S+ +E
Sbjct: 1213 EASPVVSTIEKT--TKGDVSVTEE 1234
Score = 57 (25.1 bits), Expect = 7.9e-23, Sum P(3) = 7.9e-23
Identities = 27/135 (20%), Positives = 52/135 (38%)
Query: 1894 DNDPTGISMAVMDSKECAAEAADQMCVSEGCVVVTEKLSEDL-GLNXXXXXXXXXXXXXX 1952
D + T + + S+ + E D E + TE SE + G N
Sbjct: 1124 DAEETNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKSETVEGDNKELRETMKGENVQT 1183
Query: 1953 XXXDPVNSSVTVEDSKGFEAEACDQLHVLRGGGVVAETVQEEEKTELSCEKQPIGSSVDD 2012
V SS + + E+ L + V T+++ K ++S ++ +++D
Sbjct: 1184 DSNAAVPSSKSSTEEPN-ESVLSGHLDLDTEASPVVSTIEKTTKGDVSVTEEQQSANIDG 1242
Query: 2013 ESKGPEVEPCVQMDV 2027
+ + PE+E + DV
Sbjct: 1243 QLEKPEIEESKKPDV 1257
Score = 53 (23.7 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 38/188 (20%), Positives = 74/188 (39%)
Query: 666 GK-RQALGSPPISDV----SAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKI 720
GK R+ +G + D+ + G +K + + G ++S S + + DA +
Sbjct: 1075 GKDREEIGERLVQDMLDEENNGNNTKPEITGNESDGEFKVSSSNNSKQTDAEETNTGVPL 1134
Query: 721 Q-VQPCGVATSADVAGPDQKP---AEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPS 776
+ QP V + D+A D+K E V+ + L T + + S A VPS
Sbjct: 1135 EGSQPNSVEKT-DLADGDEKANIKTEMKSETVEGDNK-ELRETMKGENVQTDSNAA-VPS 1191
Query: 777 MDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLP 836
+ + VLS + P++ S ++ + ++ EE+ N + P
Sbjct: 1192 SK-SSTEEPNESVLSGHLDLDTEASPVV--STIEKTTKGDVSVTEEQQSANID-GQLEKP 1247
Query: 837 ALDSITEP 844
++ +P
Sbjct: 1248 EIEESKKP 1255
Score = 52 (23.4 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 43/158 (27%), Positives = 66/158 (41%)
Query: 1584 SSSKDIIAESAKADVVLD--EHGKVQLLPGADNPEGGVIVPEHKSENMGEKDDISSEHAF 1641
++SK AE V L+ + V+ AD E I E KSE + + E
Sbjct: 1118 NNSKQTDAEETNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKSETVEGDNKELRETMK 1177
Query: 1642 GSSLVLQDKASEAEIGDRIDEPQVDGFSPRSMSGVVDELVDEAGDHMGVSHSPVHVVERE 1701
G ++ A+ +EP + +SG +D L EA SPV V E
Sbjct: 1178 GENVQTDSNAAVPSSKSSTEEP-----NESVLSGHLD-LDTEA--------SPV-VSTIE 1222
Query: 1702 KSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSK 1739
K+ + G S++ + IDG L+K P+ +E+SK
Sbjct: 1223 KTTK-GDVSVTEEQQSANIDGQLEK-PE-----IEESK 1253
Score = 43 (20.2 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
Identities = 33/154 (21%), Positives = 55/154 (35%)
Query: 944 GSKTISLRSKQETADVNDVARVMKEIFSETCSSKAKTGDSSL---NEGKDXXXXXXXXXX 1000
GS+ S+ K + AD ++ A + E+ SET K ++ N D
Sbjct: 1136 GSQPNSVE-KTDLADGDEKANIKTEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKS 1194
Query: 1001 XXXEVAKKQSS-----DDKTCSVTPTVETPPPGFNSPNENP--GELTGTKNDASVRGDHT 1053
E + S D + V T+E G S E + G +
Sbjct: 1195 STEEPNESVLSGHLDLDTEASPVVSTIEKTTKGDVSVTEEQQSANIDGQLEKPEIEESKK 1254
Query: 1054 PVSGHTLASKTEALKPENKAQAGRIENIANSSPD 1087
P + ++ E KP+NK ++N N++ D
Sbjct: 1255 PDVLNQVSLSIEEEKPKNKES--EVDN--NAAKD 1284
Score = 38 (18.4 bits), Expect = 9.9e-20, Sum P(4) = 9.9e-20
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 1998 ELSCEKQPIGSSVDDESKGPEVEPCVQMDVRGDGIVPETVPEELGLP 2044
+L E P+ S+++ +KG Q DG + + EE P
Sbjct: 1209 DLDTEASPVVSTIEKTTKGDVSVTEEQQSANIDGQLEKPEIEESKKP 1255
Score = 37 (18.1 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 13 NSKGRSVHNSVMELRNICNHPYL 35
+ K S + +M+LR NH L
Sbjct: 835 DGKSLSAGHVLMQLRKAANHALL 857
Score = 37 (18.1 bits), Expect = 9.9e-20, Sum P(4) = 9.9e-20
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 1370 NNLLETPLDIKSIGGPIV-----SMKAADVADADHPLETAVELGS 1409
NN +T + + G P+ S++ D+AD D E+ S
Sbjct: 1118 NNSKQTDAEETNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKS 1162
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 330 (121.2 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 75/193 (38%), Positives = 108/193 (55%)
Query: 26 LRNICNHPYLSQL--HAEEVDTLIPKHYLPPIVR---------LCGKLEMLDRLLPKLKA 74
L+ ICNHP L L E + L P ++P +R L GK+ +L+R+L ++K
Sbjct: 565 LKKICNHPDLLNLTEDLEGCEALFPPGFIPRELRGRDRNIDSSLSGKMLVLERMLYQIKQ 624
Query: 75 -TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133
TD +++ S T LD+ E + Y+ LRLDG + R L+D FN + F+FL
Sbjct: 625 ETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFL 684
Query: 134 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 193
LS +AGG G+NL A+ +I+FD DWNP D QA AR R GQK+D V RF T+EE+
Sbjct: 685 LSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEK 744
Query: 194 VRASAEHKLGVAN 206
+ HK +++
Sbjct: 745 IFQRQSHKQSLSS 757
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 328 (120.5 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 85/237 (35%), Positives = 124/237 (52%)
Query: 10 SIGNSKGRSVHNSVMELRNICNHPYLSQLHAE--EVDTLIPKHYLPPIVR---------L 58
S+ KG ++ L+ +CNHP L L + + P Y+P R
Sbjct: 525 SLLRGKGSQPLKAIGILKKLCNHPDLLNLSTDLPGCEHAFPDDYVPVEARGRDRDVRPWY 584
Query: 59 CGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 117
GK+ +LDR+L +++ T+ +++ S T+ LD+ E + Y LRLDG + R
Sbjct: 585 SGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMNVKKRQK 644
Query: 118 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 177
L+DKFN D F+FLLS +AGG G+NL A+ +++FD DWNP D QA AR R GQK+
Sbjct: 645 LVDKFNDPDGEEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPAADQQALARVWRDGQKK 704
Query: 178 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED-RREYLESLLRE 233
D V RF ++EE++ HK QS+++ D SAED R + LRE
Sbjct: 705 DCFVYRFIATGSIEEKIFQRQSHK-----QSLSSCVVD---SAEDVERHFSLDSLRE 753
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 320 (117.7 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 72/180 (40%), Positives = 106/180 (58%)
Query: 19 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP----IVRLCGKLEMLDRLLPKLKA 74
+ + ++ LR ICNHP L + IP L + GK+ +++ LL
Sbjct: 784 IFSGLVALRKICNHPDLFSGGPKNFKG-IPGEELEEDQFGYWKRSGKMIVVESLLKIWHK 842
Query: 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134
RVL FS ++LD++E +L ++Y YL++DG T+ R LI ++N+ D+ F+FLL
Sbjct: 843 QGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNE-DASIFVFLL 901
Query: 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 194
+ R GG+GVNL A+ VII+D DWNP D QA+ RA RIGQK+ V V R T T+EE++
Sbjct: 902 TTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 961
Score = 70 (29.7 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 36/137 (26%), Positives = 62/137 (45%)
Query: 1802 GDQMDISIMPEKLPEHLDIPASLATP-EEKTEGSEKDPDSSFAAQEDPKESVVEAGDQMG 1860
G +++ M +KLP+ L+ A+ ATP EEK+ + +++ + QEDP + + +
Sbjct: 1034 GTDQNVA-MGKKLPD-LNASANDATPSEEKSIAMGAEINAATSNQEDPLKDAPQTPRSLT 1091
Query: 1861 VS--LGGATVMEKSSEDLATPPLSLANEEEMIEGFDNDPTGISMAVMDSKECAAEAADQM 1918
S LGG T E ++ + + E +D TG+ E + E + +
Sbjct: 1092 SSDRLGGETDAESRLQESS----GIRGNGEC-----SDSTGVGKMCRTPGEDSIEEEEGL 1142
Query: 1919 CVS-EGCVVVTEKLSED 1934
E C V TE L E+
Sbjct: 1143 SDKRESCQVQTEPLWEN 1159
Score = 60 (26.2 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 39/193 (20%), Positives = 67/193 (34%)
Query: 559 GPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVA 618
G D +T ++ L+P G TD NV+ P ++ + A + +I + +
Sbjct: 1015 GSDVQTPKRHLKRKLHPVLG----TDQNVAMGKKLPDLNASANDATPSEEKSIAMGAEIN 1070
Query: 619 ALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISD 678
A S L A +T +SR +S G+ RG + S +
Sbjct: 1071 AATSNQEDPLKDAPQTPRSLTSSDRLGGETDAESRLQESSGI----RGNGECSDSTGVGK 1126
Query: 679 VSAGP-----ESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADV 733
+ P E + L + S ++ G+ D Q+ +K + + T
Sbjct: 1127 MCRTPGEDSIEEEEGLSDKRESCQVQTEPLWENGQTDTSFQKHKSKTKHRVTEEETLEKH 1186
Query: 734 AGPDQKPAEQSVR 746
P QKP R
Sbjct: 1187 LRPKQKPKNSKHR 1199
Score = 54 (24.1 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 28/99 (28%), Positives = 42/99 (42%)
Query: 1760 SDFC-QPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKETVAE--AGDQMDISIMPE-KLP 1815
S+F Q SS +P E DG +KD S S K AE +G S++ + +
Sbjct: 1324 SNFAVQHPSSASPKEKSQDGILKKDGKDSVSEHFSGKVEDAELSSGALTSSSLLAKMRAR 1383
Query: 1816 EHLDIPASLATPEEKTEGSEKDPDSSFAAQEDPKESVVE 1854
HL +PA L E G + + + + E +VE
Sbjct: 1384 NHLILPARL----ESESGHVPEASAPLPSSTEHDELLVE 1418
Score = 48 (22.0 bits), Expect = 5.8e-23, Sum P(3) = 5.8e-23
Identities = 56/273 (20%), Positives = 97/273 (35%)
Query: 1027 PGFNSPNENPGELTGTKNDASVRGDHTPVSGHTLASKTEALKPENKA-QAGRIENIANSS 1085
P + E GT +D H H + + + K N A S
Sbjct: 999 PDTSQSTETSAIFAGTGSDVQTPKRHLKRKLHPVLGTDQNVAMGKKLPDLNASANDATPS 1058
Query: 1086 PDDKSLPMVPNLETAPPGFDIPIEKHNEQSRNQNNPEVKGEETPVSSEAPASTEAFEQEK 1145
++KS+ M + A + P++ + R+ + + G ET S S+ +
Sbjct: 1059 -EEKSIAMGAEINAATSNQEDPLKDAPQTPRSLTSSDRLGGETDAESRLQESSGIRGNGE 1117
Query: 1146 VTNTSSFVNLADLSSDDKTCSVTPAMETAPGFDIPIEKGVEQSGTEIDA---KVKWKNTP 1202
++++ + +D + + E E T+ K K K+
Sbjct: 1118 CSDSTGVGKMCRTPGEDSIEEEEGLSDKRESCQVQTEPLWENGQTDTSFQKHKSKTKHRV 1177
Query: 1203 LPGEAIVAGIEVF-KPEN-KTDGDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGN 1260
E + + KP+N K D+ K E T H LVK+ ++ D+ + V
Sbjct: 1178 TEEETLEKHLRPKQKPKNSKHRRDA--KFEGTRIPH-LVKKRQYQRQDNENE--SEVKER 1232
Query: 1261 TSEDSSKMPLETPLIMKSTEGPSVSMKADDVAD 1293
+++D LE L KS SV MK D + D
Sbjct: 1233 SNDD---YVLEK-LFKKSVGVHSV-MKHDAIMD 1260
Score = 47 (21.6 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 29/114 (25%), Positives = 49/114 (42%)
Query: 1687 HMGVSHSPVHVVER---EKSEELGLPSLSSATKEEKI-DGSLDKDPDSNLVVLEDSKGSI 1742
H G++ +P R +++ + SSA+ +EK DG L KD + V E G +
Sbjct: 1304 HRGLAGAPAGRKSRFGQKRNSNFAVQHPSSASPKEKSQDGILKKDGKDS--VSEHFSGKV 1361
Query: 1743 GDQMDCCQSGVVVPENLSDFCQPSSSLAPWEAKIDGSSEKDPVSSQSVLEGSKE 1796
D SG + +L + + L A+++ S P +S + L S E
Sbjct: 1362 EDAE--LSSGALTSSSLLAKMRARNHLI-LPARLESESGHVPEAS-APLPSSTE 1411
Score = 42 (19.8 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 737 DQKPAEQSVRVVQSNQPINLPATHDSSS-QPSGSTPAQVPSMD-LGNVASDTKEVLSENS 794
D P+E+ + + IN ++ + + TP + S D LG +D + L E+S
Sbjct: 1054 DATPSEE--KSIAMGAEINAATSNQEDPLKDAPQTPRSLTSSDRLGG-ETDAESRLQESS 1110
Query: 795 SSKG 798
+G
Sbjct: 1111 GIRG 1114
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 325 (119.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 70/178 (39%), Positives = 106/178 (59%)
Query: 19 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV--RLCGKLEMLDRLLPKLKATD 76
+ + ++ LR ICNHP L + + T+ + GK+ +++ LL
Sbjct: 791 IFSGLVALRKICNHPDLFSGGPKNLKTIPDDDEEDQFGYWKRSGKMIVVESLLKIWHKQG 850
Query: 77 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136
RVL FS ++LD++E +L ++Y YL++DG T+ R LI ++N+ D+ F+FLL+
Sbjct: 851 QRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNE-DTSIFVFLLTT 909
Query: 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 194
R GG+GVNL A+ VII+D DWNP D QA+ RA RIGQK+ V V R T T+EE++
Sbjct: 910 RVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 967
Score = 63 (27.2 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 43/191 (22%), Positives = 72/191 (37%)
Query: 1107 PIEKHNEQSRN---QNNPEVKGEETPVSSEAPASTEAFEQEKVTNTSSFVNLADLSSDDK 1163
P++ + RN PE K + P+ E ++ + TS L+ S +
Sbjct: 1085 PLKDAPQTPRNLTGSGGPEEKTKAVPILEELSVTSGRVDCSSSPRTSKMDGLSSEESIHE 1144
Query: 1164 TCSVTPAMETAPGFDIPIEKGVEQSGTEIDAKVKWKNTPLPGEAIVA-GIEVFKPENKTD 1222
++ E+ P+++ E K K K++ L E + KP+N T
Sbjct: 1145 KQGLSDRRESCQAQTEPLQENKESENNFSKHKSKTKHSVLEEETLEQLQRPKSKPKN-TK 1203
Query: 1223 GDSVEKLEDTVDDHSLVKELIHRSPDHSDMVIGNVPGNTSEDSSKMPLETPLIMKSTEGP 1282
+ E T H LVK+ ++ D + TSE S+ + L KS
Sbjct: 1204 HCRDARFEGTRIPH-LVKKRRYQKQD------SEIESETSEQSNDDYVLEKLFKKSVGVH 1256
Query: 1283 SVSMKADDVAD 1293
SV M+ D + D
Sbjct: 1257 SV-MRHDAIMD 1266
Score = 47 (21.6 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 43/191 (22%), Positives = 77/191 (40%)
Query: 1565 RDGDI-EIFNMEGGPSNALLSSSKDIIAESAKADVVLDEHGKVQLLP--GADNPEGGVIV 1621
+ D+ E+F + P + + + I A + H K +L P GAD+ I
Sbjct: 992 KSNDLYELFTLTS-PGASQSTETSAIFAGTGSEVQTPKLHLKRKLPPAFGADH--NIPIC 1048
Query: 1622 PEHKSENMGEKDDISSEHAFGSSLVLQDKASEAEIGDRI-DEPQVDGFSPRSMSGVVDEL 1680
+ N D SSE F + + + + GD + D PQ +PR+++G
Sbjct: 1049 RKFPDSNASTNDTTSSEEKFTAKGAGVNTITSDQ-GDPLKDAPQ----TPRNLTG----- 1098
Query: 1681 VDEAGDHMGVSHSPVHVVEREKSEELGLPSLSSATKEEKIDGSLDKDPDSNLVVLEDSKG 1740
G P+ +E E S G SS+ + K+DG ++ + + +G
Sbjct: 1099 --SGGPEEKTKAVPI--LE-ELSVTSGRVDCSSSPRTSKMDGLSSEES------IHEKQG 1147
Query: 1741 SIGDQMDCCQS 1751
+ D+ + CQ+
Sbjct: 1148 -LSDRRESCQA 1157
Score = 46 (21.3 bits), Expect = 2.3e-22, Sum P(3) = 2.3e-22
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 557 SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSA 616
S GP+ KT P E L+ + G + SS T+ + S ++ + G D +
Sbjct: 1099 SGGPEEKTKAVPILEELSVTSGRVDCS----SSPRTSKMDGLSSEESIHEKQGLSDRRES 1154
Query: 617 VAALNSELNTN 627
A L N
Sbjct: 1155 CQAQTEPLQEN 1165
Score = 45 (20.9 bits), Expect = 2.3e-22, Sum P(3) = 2.3e-22
Identities = 28/106 (26%), Positives = 39/106 (36%)
Query: 709 QDALSQELSNKIQV--QPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQP 766
QDAL ++ Q GV T G PA R Q H SS+
Sbjct: 1284 QDALKALRLSRQQCLGASSGVPTWTGHRGISGAPAGIKSRFGQKRNS-KFSVQHPSSASS 1342
Query: 767 SGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILAL-SNMKA 811
VP D + AS+ E++ S G +P +L + M+A
Sbjct: 1343 KEKCQDGVPRKDGKDNASEHFSGKVEDAESSPGALPSSSLLAKMRA 1388
Score = 43 (20.2 bits), Expect = 4.8e-22, Sum P(3) = 4.8e-22
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 680 SAGPESKSN----LQSEN-NSGGLRLSKSVSMGKQDALSQELS 717
S GPE K+ L+ + SG + S S K D LS E S
Sbjct: 1099 SGGPEEKTKAVPILEELSVTSGRVDCSSSPRTSKMDGLSSEES 1141
Score = 39 (18.8 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 686 KSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQ 721
+ N +SENN SK S K L +E ++Q
Sbjct: 1163 QENKESENN-----FSKHKSKTKHSVLEEETLEQLQ 1193
Score = 39 (18.8 bits), Expect = 8.2e-21, Sum P(3) = 8.2e-21
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 1768 SLAPWEAKIDGSSEKDPVSSQSVLEGSKET 1797
S +P +K+DG S ++ + + L +E+
Sbjct: 1125 SSSPRTSKMDGLSSEESIHEKQGLSDRRES 1154
Score = 37 (18.1 bits), Expect = 8.2e-21, Sum P(3) = 8.2e-21
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 1374 ETPLDIKSIGGPIVSMKAADVAD 1396
+TP ++ GGP KA + +
Sbjct: 1091 QTPRNLTGSGGPEEKTKAVPILE 1113
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 336 (123.3 bits), Expect = 6.0e-25, Sum P(3) = 6.0e-25
Identities = 75/181 (41%), Positives = 106/181 (58%)
Query: 19 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRL-----CGKLEMLDRLLPKLK 73
V + ++ LR ICNHP L ++ +P L + GK+ +++ LL
Sbjct: 790 VFSGLVALRKICNHPDLFS-GGPKILKCVPDADLEEADQFGYWKRSGKMIVVESLLKIWH 848
Query: 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133
HRVLFF+ ++L ++E +L + Y YLR+DG T+ R LI ++N+ D FIFL
Sbjct: 849 KQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNE-DKSIFIFL 907
Query: 134 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 193
L+ R GG+GVNL AD VII+D DWNP D QA+ RA RIGQK+ V V R T T+EE+
Sbjct: 908 LTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEK 967
Query: 194 V 194
+
Sbjct: 968 I 968
Score = 62 (26.9 bits), Expect = 6.0e-25, Sum P(3) = 6.0e-25
Identities = 36/159 (22%), Positives = 60/159 (37%)
Query: 696 GGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGP----DQKP-AEQSVRVVQS 750
GGL L KS S + S L+ + TS + G DQ A+ +
Sbjct: 1047 GGLHLKKSSSPKYSKSSSSHLTRHRANSSEAIETSEEAKGNLETFDQNSYAKDNAETATD 1106
Query: 751 NQPINLPATHDSSSQP----SGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVIPILAL 806
+N + +S + S S P S + V + EV +EN+ ++ A
Sbjct: 1107 INSVN-KSKQESLERADISLSQSLPGGAGSSENAKVTEEEHEVANENAEGDFSLLCGAAG 1165
Query: 807 SNMKAVERVNIQSFEEK--ACTNASKSKATLPALDSITE 843
S K V++ + CT+ +K + + + DS E
Sbjct: 1166 SQEKQVDKTEDGQLDNNHYKCTSKTKHRVDMLSHDSHKE 1204
Score = 48 (22.0 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1785 VSSQSVLEGSKETVAEAGDQMDISIMPEKLPEHLDIPA 1822
+SS V +G++ + AG D+ + +L L+ PA
Sbjct: 1003 LSSPDVSQGTETSAIFAGTGSDVQVPKHQLKRKLERPA 1040
Score = 43 (20.2 bits), Expect = 6.0e-25, Sum P(3) = 6.0e-25
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 916 SGPSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQETADVNDVARVMKEIFSETCS 975
SG S F ++ Q +N S S +S K + AD V K +
Sbjct: 1316 SGLSGAPSGVKFRSRFGQ-KRNPMLLSSHSTCVSPMKKCKDADTMKKENVKKNSSNGHFD 1374
Query: 976 SKAKTGDSS 984
K++TG+SS
Sbjct: 1375 GKSETGESS 1383
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 340 (124.7 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 79/211 (37%), Positives = 120/211 (56%)
Query: 19 VHNSVMELRNICNHPYLSQL-HAEEV--DTLIPKHYLPPI---VRL-CGKLEMLDRLLPK 71
++N+++ N +P + Q+ +A V D + + + P+ + L GKL L++LL K
Sbjct: 1720 INNNLLNYSNDKMNPIILQIKNATRVYHDAFLKQSIIFPLNKDISLGSGKLCALEKLLSK 1779
Query: 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131
K ++ L F+ ++LD++E +L Y ++RLDG T R ++ KFN D FI
Sbjct: 1780 CKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNN-DKSIFI 1838
Query: 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191
F+ S R+G +G+NL AA+ VI +DTDWNP +D QA R HRIGQ +DV V RF TVE
Sbjct: 1839 FISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVE 1898
Query: 192 EQVRASAEHKLGVANQSITAGFFDN-NTSAE 221
E + K + N I G F+N NT ++
Sbjct: 1899 ENIWKKQLQKRKLDNICINMGNFNNSNTHSK 1929
Score = 51 (23.0 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 2 KRVEENLGSIGNSKGRSVHNSVMELRNICNH 32
K V+ L + GN G + N +++LR +CNH
Sbjct: 921 KNVQNTLNT-GNYIG--LMNILIQLRKVCNH 948
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 7 NLGSIGNSKGRSVHNSVMELRN 28
N+ SIGN + RS+ N + E N
Sbjct: 1182 NINSIGNEEKRSL-NVLNEQNN 1202
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 340 (124.7 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 79/211 (37%), Positives = 120/211 (56%)
Query: 19 VHNSVMELRNICNHPYLSQL-HAEEV--DTLIPKHYLPPI---VRL-CGKLEMLDRLLPK 71
++N+++ N +P + Q+ +A V D + + + P+ + L GKL L++LL K
Sbjct: 1720 INNNLLNYSNDKMNPIILQIKNATRVYHDAFLKQSIIFPLNKDISLGSGKLCALEKLLSK 1779
Query: 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131
K ++ L F+ ++LD++E +L Y ++RLDG T R ++ KFN D FI
Sbjct: 1780 CKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNN-DKSIFI 1838
Query: 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191
F+ S R+G +G+NL AA+ VI +DTDWNP +D QA R HRIGQ +DV V RF TVE
Sbjct: 1839 FISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVE 1898
Query: 192 EQVRASAEHKLGVANQSITAGFFDN-NTSAE 221
E + K + N I G F+N NT ++
Sbjct: 1899 ENIWKKQLQKRKLDNICINMGNFNNSNTHSK 1929
Score = 51 (23.0 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 2 KRVEENLGSIGNSKGRSVHNSVMELRNICNH 32
K V+ L + GN G + N +++LR +CNH
Sbjct: 921 KNVQNTLNT-GNYIG--LMNILIQLRKVCNH 948
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 7 NLGSIGNSKGRSVHNSVMELRN 28
N+ SIGN + RS+ N + E N
Sbjct: 1182 NINSIGNEEKRSL-NVLNEQNN 1202
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 323 (118.8 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 80/193 (41%), Positives = 110/193 (56%)
Query: 7 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQ----LHAEEVDTLIPKHYLPPIVRLCGKL 62
++ I N K + ++ + LR ICNHP L LH E+ + Y P GKL
Sbjct: 577 DMQKILNGKRQMLYG-IDILRKICNHPDLVTREYLLHKEDYN------YGDP--EKSGKL 627
Query: 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDK 121
+++ LL K HR L FS ++LD++E L Y R+DG TS R L+D
Sbjct: 628 KVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDN 687
Query: 122 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 181
FN+ + F +FLL+ R GG+GVNL AD VI+FD DWNP D QA+ RA R+GQK+DV+V
Sbjct: 688 FNKNEY-FDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVV 746
Query: 182 LRFETVQTVEEQV 194
R T T+EE++
Sbjct: 747 YRLMTAGTIEEKI 759
WARNING: HSPs involving 336 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.306 0.126 0.349 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 2260 2092 0.00087 126 3 11 23 0.41 35
41 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 586
No. of states in DFA: 625 (66 KB)
Total size of DFA: 693 KB (2297 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 225.48u 0.11s 225.59t Elapsed: 00:00:10
Total cpu time: 225.60u 0.11s 225.71t Elapsed: 00:00:10
Start: Thu May 9 22:22:39 2013 End: Thu May 9 22:22:49 2013
WARNINGS ISSUED: 2