Query 000096
Match_columns 2260
No_of_seqs 453 out of 2590
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 18:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 6.9E-57 1.5E-61 547.6 21.7 328 12-373 665-993 (1157)
2 KOG0384 Chromodomain-helicase 100.0 2.6E-49 5.6E-54 488.1 17.7 248 6-257 625-888 (1373)
3 KOG0385 Chromatin remodeling c 100.0 2.6E-48 5.6E-53 464.7 19.7 237 16-258 431-671 (971)
4 PLN03142 Probable chromatin-re 100.0 1.1E-39 2.3E-44 410.6 23.9 238 16-261 431-673 (1033)
5 KOG0391 SNF2 family DNA-depend 100.0 2.2E-37 4.7E-42 377.4 36.1 206 55-261 1255-1467(1958)
6 KOG0389 SNF2 family DNA-depend 100.0 1.4E-36 3.1E-41 365.7 18.6 161 53-214 754-914 (941)
7 KOG0387 Transcription-coupled 100.0 2.5E-36 5.5E-41 363.9 16.9 207 17-227 490-697 (923)
8 KOG0392 SNF2 family DNA-depend 100.0 1.4E-33 2.9E-38 348.5 17.7 195 16-211 1261-1477(1549)
9 KOG0388 SNF2 family DNA-depend 100.0 8.1E-32 1.8E-36 320.3 13.1 160 54-215 1022-1181(1185)
10 KOG0390 DNA repair protein, SN 100.0 5E-31 1.1E-35 323.3 18.8 196 19-214 526-733 (776)
11 COG0553 HepA Superfamily II DN 100.0 1.4E-29 3.1E-34 307.1 20.8 195 16-211 638-845 (866)
12 KOG1002 Nucleotide excision re 100.0 2.8E-28 6E-33 284.0 13.7 157 55-212 615-773 (791)
13 KOG1015 Transcription regulato 100.0 3.6E-28 7.8E-33 294.6 13.9 209 56-264 1122-1356(1567)
14 KOG4439 RNA polymerase II tran 99.9 4.8E-27 1E-31 281.6 18.5 158 54-211 723-881 (901)
15 PRK04914 ATP-dependent helicas 99.9 4.2E-23 9.2E-28 260.6 20.6 154 56-212 475-629 (956)
16 KOG1000 Chromatin remodeling p 99.8 1.4E-20 3.1E-25 221.0 14.0 149 60-209 472-624 (689)
17 KOG1016 Predicted DNA helicase 99.8 4.4E-21 9.6E-26 230.7 8.3 169 55-223 698-884 (1387)
18 KOG1001 Helicase-like transcri 99.8 1.7E-20 3.7E-25 230.8 2.4 151 59-210 521-672 (674)
19 PRK13766 Hef nuclease; Provisi 99.7 7.1E-17 1.5E-21 199.7 17.8 146 57-208 344-499 (773)
20 cd00079 HELICc Helicase superf 99.7 1.1E-16 2.4E-21 152.4 12.8 120 60-182 12-131 (131)
21 KOG0383 Predicted helicase [Ge 99.6 1.3E-16 2.9E-21 196.2 4.7 127 13-142 570-696 (696)
22 COG0513 SrmB Superfamily II DN 99.6 5.6E-15 1.2E-19 177.7 14.6 192 2-201 193-392 (513)
23 KOG0331 ATP-dependent RNA heli 99.6 1.7E-14 3.8E-19 173.6 16.4 125 55-182 319-444 (519)
24 PTZ00110 helicase; Provisional 99.6 1.3E-14 2.8E-19 175.6 14.6 128 56-188 357-484 (545)
25 KOG0328 Predicted ATP-dependen 99.5 4.4E-14 9.6E-19 159.7 13.4 163 22-191 214-376 (400)
26 TIGR00603 rad25 DNA repair hel 99.5 9.7E-14 2.1E-18 172.9 17.7 133 58-197 478-616 (732)
27 PRK11192 ATP-dependent RNA hel 99.5 1.8E-13 4E-18 159.2 15.6 120 58-182 229-348 (434)
28 COG1111 MPH1 ERCC4-like helica 99.5 2.6E-13 5.6E-18 162.0 17.1 147 58-210 346-503 (542)
29 PRK11776 ATP-dependent RNA hel 99.5 2.6E-13 5.5E-18 159.5 16.9 124 58-188 226-349 (460)
30 KOG0333 U5 snRNP-like RNA heli 99.5 1.5E-13 3.3E-18 163.8 12.6 172 3-180 441-618 (673)
31 PRK01297 ATP-dependent RNA hel 99.5 4.1E-13 8.9E-18 158.8 16.3 125 57-188 318-442 (475)
32 KOG0330 ATP-dependent RNA heli 99.5 1.2E-13 2.5E-18 161.0 11.3 180 3-191 224-410 (476)
33 PF00271 Helicase_C: Helicase 99.5 6.4E-14 1.4E-18 127.2 7.0 78 94-174 1-78 (78)
34 PRK04837 ATP-dependent RNA hel 99.5 2.3E-13 5E-18 158.4 13.0 123 58-187 239-361 (423)
35 PRK04537 ATP-dependent RNA hel 99.5 4.7E-13 1E-17 163.2 15.2 122 58-186 241-362 (572)
36 PRK10590 ATP-dependent RNA hel 99.5 2.4E-13 5.2E-18 160.4 11.5 119 57-180 228-346 (456)
37 PRK11634 ATP-dependent RNA hel 99.4 5.1E-12 1.1E-16 156.0 20.5 119 57-180 228-346 (629)
38 PLN00206 DEAD-box ATP-dependen 99.4 2.2E-12 4.7E-17 155.3 15.8 126 57-187 348-474 (518)
39 PTZ00424 helicase 45; Provisio 99.4 2.9E-12 6.3E-17 146.4 15.2 121 61-188 254-374 (401)
40 smart00490 HELICc helicase sup 99.4 1.2E-12 2.5E-17 116.0 8.1 81 91-174 2-82 (82)
41 KOG0326 ATP-dependent RNA heli 99.3 1.2E-12 2.5E-17 150.1 7.8 174 4-186 248-427 (459)
42 KOG0298 DEAD box-containing he 99.3 7.7E-13 1.7E-17 168.1 6.5 139 58-203 1201-1341(1394)
43 KOG0332 ATP-dependent RNA heli 99.3 8.4E-12 1.8E-16 145.3 13.8 154 28-188 284-443 (477)
44 TIGR00614 recQ_fam ATP-depende 99.3 8.8E-12 1.9E-16 148.1 13.9 118 61-182 212-329 (470)
45 KOG0342 ATP-dependent RNA heli 99.3 3.4E-12 7.3E-17 152.0 10.1 172 2-177 249-428 (543)
46 TIGR01389 recQ ATP-dependent D 99.3 2.8E-11 6.1E-16 147.2 15.1 119 57-180 207-325 (591)
47 PHA02558 uvsW UvsW helicase; P 99.3 5.3E-11 1.2E-15 143.0 16.1 133 55-189 323-456 (501)
48 PRK11057 ATP-dependent DNA hel 99.3 3.3E-11 7.1E-16 147.9 14.6 115 60-179 222-336 (607)
49 KOG0341 DEAD-box protein abstr 99.3 1.4E-11 3E-16 143.5 9.7 182 3-192 346-532 (610)
50 KOG0338 ATP-dependent RNA heli 99.2 5.6E-11 1.2E-15 142.1 14.3 188 2-198 346-541 (691)
51 KOG0345 ATP-dependent RNA heli 99.2 4.6E-11 1E-15 142.0 13.2 176 2-182 176-360 (567)
52 KOG0346 RNA helicase [RNA proc 99.2 7.2E-11 1.6E-15 139.6 13.6 156 23-182 215-406 (569)
53 KOG0343 RNA Helicase [RNA proc 99.2 8.3E-11 1.8E-15 141.5 13.2 192 2-202 234-435 (758)
54 KOG0340 ATP-dependent RNA heli 99.2 5.6E-11 1.2E-15 138.1 11.2 173 3-178 173-353 (442)
55 TIGR01587 cas3_core CRISPR-ass 99.2 2.7E-10 6E-15 129.1 16.4 123 59-188 206-338 (358)
56 PLN03137 ATP-dependent DNA hel 99.2 1.6E-10 3.4E-15 148.9 13.2 105 76-183 680-784 (1195)
57 TIGR03817 DECH_helic helicase/ 99.1 3E-10 6.4E-15 142.8 13.1 124 68-196 263-394 (742)
58 PRK05298 excinuclease ABC subu 99.1 6E-09 1.3E-13 129.7 24.2 124 58-187 428-556 (652)
59 TIGR00631 uvrb excinuclease AB 99.1 1.8E-09 4E-14 134.5 19.5 134 58-197 424-564 (655)
60 KOG0335 ATP-dependent RNA heli 99.1 5.2E-10 1.1E-14 134.4 12.6 124 56-182 310-440 (482)
61 KOG4284 DEAD box protein [Tran 99.1 2.2E-10 4.8E-15 139.3 9.4 169 4-177 189-370 (980)
62 KOG0327 Translation initiation 99.1 5E-10 1.1E-14 131.2 10.8 122 59-189 250-371 (397)
63 PRK13767 ATP-dependent helicas 99.1 2.9E-09 6.4E-14 136.0 18.5 118 63-183 271-395 (876)
64 PRK12898 secA preprotein trans 99.1 1.3E-09 2.7E-14 135.7 14.5 131 57-197 454-592 (656)
65 KOG0336 ATP-dependent RNA heli 99.0 5.9E-10 1.3E-14 131.0 10.4 120 55-178 445-564 (629)
66 KOG0339 ATP-dependent RNA heli 99.0 8.7E-10 1.9E-14 132.0 10.6 126 58-189 451-576 (731)
67 PRK09200 preprotein translocas 99.0 1.9E-09 4.1E-14 136.3 13.3 131 57-197 409-547 (790)
68 KOG0348 ATP-dependent RNA heli 99.0 1.7E-09 3.7E-14 130.2 11.9 124 55-181 400-549 (708)
69 PF11496 HDA2-3: Class II hist 99.0 2.2E-09 4.8E-14 123.3 12.2 179 17-198 54-255 (297)
70 TIGR02621 cas3_GSU0051 CRISPR- 98.9 9E-09 2E-13 130.8 14.1 117 61-182 256-386 (844)
71 TIGR00963 secA preprotein tran 98.9 1.1E-08 2.5E-13 128.4 14.0 119 59-182 388-513 (745)
72 KOG0344 ATP-dependent RNA heli 98.9 1.1E-08 2.4E-13 124.5 11.8 123 58-187 371-494 (593)
73 TIGR03714 secA2 accessory Sec 98.8 1.4E-08 3E-13 128.1 12.5 130 57-197 405-543 (762)
74 TIGR00580 mfd transcription-re 98.8 1.7E-08 3.6E-13 129.9 13.3 109 74-187 658-769 (926)
75 KOG0347 RNA helicase [RNA proc 98.8 2.1E-08 4.6E-13 121.4 12.8 97 76-175 463-559 (731)
76 COG1061 SSL2 DNA or RNA helica 98.8 2.9E-08 6.3E-13 118.7 13.8 138 58-200 266-406 (442)
77 KOG0354 DEAD-box like helicase 98.8 4E-08 8.7E-13 123.0 15.5 145 57-210 392-550 (746)
78 KOG0350 DEAD-box ATP-dependent 98.8 1.3E-08 2.7E-13 122.4 10.2 132 61-201 416-551 (620)
79 KOG0334 RNA helicase [RNA proc 98.8 3.1E-08 6.7E-13 126.2 13.9 124 58-187 596-719 (997)
80 PRK10689 transcription-repair 98.8 2.6E-08 5.6E-13 130.5 13.4 115 65-185 799-916 (1147)
81 PRK10917 ATP-dependent DNA hel 98.8 5.6E-08 1.2E-12 121.6 15.2 122 60-186 455-587 (681)
82 TIGR00643 recG ATP-dependent D 98.8 7.6E-08 1.7E-12 119.3 15.2 115 63-180 435-560 (630)
83 PRK12906 secA preprotein trans 98.7 3.4E-08 7.4E-13 125.0 11.7 120 58-182 422-549 (796)
84 PRK09751 putative ATP-dependen 98.7 1.4E-07 2.9E-12 125.8 16.1 97 74-173 242-371 (1490)
85 PRK12900 secA preprotein trans 98.7 1E-07 2.2E-12 122.3 12.8 129 59-197 581-717 (1025)
86 PRK02362 ski2-like helicase; P 98.7 1.3E-07 2.9E-12 118.8 13.1 113 72-187 239-396 (737)
87 TIGR01970 DEAH_box_HrpB ATP-de 98.7 6.5E-08 1.4E-12 123.4 10.4 109 75-189 208-337 (819)
88 PF14619 SnAC: Snf2-ATP coupli 98.6 1.1E-08 2.4E-13 97.4 2.5 61 292-364 14-74 (74)
89 KOG1123 RNA polymerase II tran 98.6 4.3E-07 9.4E-12 109.4 15.1 168 57-233 524-707 (776)
90 COG0514 RecQ Superfamily II DN 98.6 2.1E-07 4.5E-12 115.2 12.8 105 74-181 228-332 (590)
91 PHA02653 RNA helicase NPH-II; 98.6 2.2E-07 4.8E-12 116.7 12.2 110 75-191 394-517 (675)
92 KOG0337 ATP-dependent RNA heli 98.6 7.2E-08 1.6E-12 114.6 7.3 181 2-189 183-369 (529)
93 PRK11664 ATP-dependent RNA hel 98.6 1.6E-07 3.5E-12 119.8 10.0 110 75-190 211-341 (812)
94 PRK01172 ski2-like helicase; P 98.5 6.6E-07 1.4E-11 111.3 13.7 112 65-180 225-370 (674)
95 KOG0349 Putative DEAD-box RNA 98.5 2E-07 4.2E-12 110.8 8.3 96 76-174 505-603 (725)
96 PRK00254 ski2-like helicase; P 98.5 9.1E-07 2E-11 111.2 13.0 121 66-189 228-389 (720)
97 COG1202 Superfamily II helicas 98.4 8.3E-07 1.8E-11 108.5 10.4 170 14-187 354-552 (830)
98 PRK13104 secA preprotein trans 98.3 2.9E-06 6.3E-11 108.8 12.3 130 58-197 426-593 (896)
99 PRK12904 preprotein translocas 98.3 3.3E-06 7.1E-11 108.0 12.6 130 58-197 412-579 (830)
100 PRK09694 helicase Cas3; Provis 98.3 7.4E-06 1.6E-10 105.8 15.5 110 63-176 548-665 (878)
101 TIGR03158 cas3_cyano CRISPR-as 98.3 3E-06 6.5E-11 98.9 10.7 100 60-171 251-357 (357)
102 PRK13107 preprotein translocas 98.3 3.2E-06 6.9E-11 108.4 11.6 130 58-197 431-597 (908)
103 PRK11131 ATP-dependent RNA hel 98.2 3E-06 6.6E-11 112.0 10.1 108 75-190 285-413 (1294)
104 TIGR01967 DEAH_box_HrpA ATP-de 98.2 4.3E-06 9.4E-11 110.7 9.4 123 61-191 263-407 (1283)
105 COG1201 Lhr Lhr-like helicases 98.1 2E-05 4.3E-10 101.0 14.0 133 63-202 240-374 (814)
106 PRK11448 hsdR type I restricti 98.0 2.7E-05 5.9E-10 102.9 12.3 106 76-185 698-815 (1123)
107 TIGR00596 rad1 DNA repair prot 98.0 2.4E-05 5.1E-10 100.6 10.1 43 56-98 266-317 (814)
108 COG0556 UvrB Helicase subunit 98.0 0.00027 5.9E-09 87.1 18.4 138 61-202 431-573 (663)
109 TIGR00595 priA primosomal prot 97.9 4.8E-05 1E-09 93.4 11.8 95 89-186 271-381 (505)
110 PRK09401 reverse gyrase; Revie 97.9 3.4E-05 7.3E-10 102.4 9.9 104 60-173 315-431 (1176)
111 KOG0351 ATP-dependent DNA heli 97.9 4.9E-05 1.1E-09 98.8 10.6 108 73-183 482-589 (941)
112 PRK05580 primosome assembly pr 97.8 0.00017 3.8E-09 91.2 13.0 95 89-186 439-549 (679)
113 PRK14701 reverse gyrase; Provi 97.6 0.00015 3.2E-09 98.9 10.2 103 63-176 320-446 (1638)
114 TIGR01054 rgy reverse gyrase. 97.6 0.00024 5.2E-09 94.7 11.3 88 61-157 314-408 (1171)
115 PF13871 Helicase_C_4: Helicas 97.5 0.00021 4.6E-09 82.8 7.9 92 117-211 52-151 (278)
116 COG1205 Distinct helicase fami 97.5 0.00077 1.7E-08 87.6 13.3 133 60-197 290-431 (851)
117 KOG0352 ATP-dependent DNA heli 97.5 0.0002 4.3E-09 86.3 7.0 102 79-183 258-359 (641)
118 KOG0953 Mitochondrial RNA heli 97.4 0.00051 1.1E-08 85.0 10.0 157 17-178 298-466 (700)
119 COG1203 CRISPR-associated heli 97.4 0.00076 1.7E-08 86.2 11.7 139 66-208 430-572 (733)
120 KOG0329 ATP-dependent RNA heli 97.3 0.00011 2.4E-09 84.3 2.4 84 54-177 263-346 (387)
121 PRK12903 secA preprotein trans 97.3 0.0015 3.2E-08 84.7 11.9 130 58-197 408-545 (925)
122 PRK12326 preprotein translocas 97.1 0.0027 5.8E-08 81.4 12.1 131 58-198 409-554 (764)
123 COG1200 RecG RecG-like helicas 97.0 0.004 8.7E-08 79.0 12.2 113 58-174 456-579 (677)
124 COG4098 comFA Superfamily II D 96.8 0.012 2.7E-07 70.4 12.9 121 64-189 293-417 (441)
125 COG1197 Mfd Transcription-repa 96.7 0.013 2.8E-07 77.8 13.6 114 68-187 796-912 (1139)
126 PRK12899 secA preprotein trans 96.6 0.011 2.3E-07 77.8 11.8 129 59-197 551-687 (970)
127 COG1204 Superfamily II helicas 96.4 0.017 3.6E-07 75.0 11.5 111 62-176 239-396 (766)
128 PRK12901 secA preprotein trans 96.2 0.017 3.7E-07 76.3 10.1 129 58-196 610-746 (1112)
129 PRK13103 secA preprotein trans 96.0 0.16 3.5E-06 67.1 17.5 131 58-198 431-598 (913)
130 KOG4150 Predicted ATP-dependen 96.0 0.026 5.7E-07 70.5 10.0 132 57-193 506-645 (1034)
131 TIGR00348 hsdR type I site-spe 95.9 0.055 1.2E-06 69.2 12.4 108 76-186 514-649 (667)
132 KOG0353 ATP-dependent DNA heli 95.8 0.032 6.8E-07 67.2 8.9 124 59-185 298-466 (695)
133 TIGR01407 dinG_rel DnaQ family 95.3 0.1 2.2E-06 68.4 11.9 89 64-158 661-756 (850)
134 KOG0951 RNA helicase BRR2, DEA 95.3 0.078 1.7E-06 71.0 10.5 96 75-174 545-688 (1674)
135 PF13307 Helicase_C_2: Helicas 95.0 0.064 1.4E-06 57.4 7.5 79 73-158 6-92 (167)
136 CHL00122 secA preprotein trans 94.6 0.21 4.5E-06 65.9 11.6 85 58-146 406-491 (870)
137 COG1199 DinG Rad3-related DNA 93.9 0.33 7.2E-06 61.3 11.4 81 74-159 477-560 (654)
138 COG4096 HsdR Type I site-speci 93.9 0.23 5E-06 64.9 10.0 122 61-185 405-545 (875)
139 PRK08074 bifunctional ATP-depe 93.3 0.44 9.5E-06 63.4 11.4 96 63-161 738-839 (928)
140 KOG0952 DNA/RNA helicase MER3/ 92.1 0.71 1.5E-05 61.8 10.7 105 71-178 344-481 (1230)
141 TIGR00604 rad3 DNA repair heli 91.9 0.86 1.9E-05 58.9 11.1 97 63-160 508-618 (705)
142 KOG0391 SNF2 family DNA-depend 91.9 0.1 2.2E-06 69.4 2.9 28 11-38 880-907 (1958)
143 PRK07246 bifunctional ATP-depe 91.7 1.1 2.5E-05 59.1 12.1 90 63-158 634-725 (820)
144 PF06862 DUF1253: Protein of u 91.4 1.7 3.7E-05 54.3 12.4 126 59-186 280-413 (442)
145 PRK11747 dinG ATP-dependent DN 91.1 1.4 3.1E-05 57.2 11.8 92 62-158 520-616 (697)
146 KOG0949 Predicted helicase, DE 91.1 0.29 6.2E-06 64.8 5.6 76 98-178 962-1038(1330)
147 KOG1513 Nuclear helicase MOP-3 90.1 1.2 2.5E-05 58.4 9.5 85 119-206 850-942 (1300)
148 COG4889 Predicted helicase [Ge 89.8 0.65 1.4E-05 61.1 7.1 85 101-185 500-585 (1518)
149 PRK12902 secA preprotein trans 89.6 2.2 4.8E-05 57.1 11.7 84 59-146 422-506 (939)
150 COG1198 PriA Primosomal protei 89.3 2.3 5.1E-05 55.9 11.6 97 90-189 494-606 (730)
151 PHA03247 large tegument protei 89.3 1E+02 0.0022 46.4 26.7 12 537-548 2779-2790(3151)
152 COG1643 HrpA HrpA-like helicas 88.8 1.4 3E-05 58.6 9.3 125 64-191 246-390 (845)
153 KOG0947 Cytoplasmic exosomal R 88.7 21 0.00046 48.6 19.0 114 65-182 555-717 (1248)
154 PF02399 Herpes_ori_bp: Origin 88.6 1.6 3.4E-05 57.8 9.3 112 61-183 268-385 (824)
155 KOG0922 DEAH-box RNA helicase 87.2 1.9 4.1E-05 55.9 8.7 116 74-192 256-394 (674)
156 KOG0924 mRNA splicing factor A 87.0 1.5 3.2E-05 56.9 7.5 116 77-195 564-704 (1042)
157 COG0653 SecA Preprotein transl 86.4 13 0.00029 49.8 15.7 131 58-198 411-552 (822)
158 KOG0920 ATP-dependent RNA heli 85.5 2.9 6.3E-05 56.1 9.3 129 58-192 393-548 (924)
159 KOG0950 DNA polymerase theta/e 84.8 1.3 2.8E-05 59.1 5.7 71 102-175 524-598 (1008)
160 TIGR00595 priA primosomal prot 84.8 6.1 0.00013 49.9 11.3 95 57-155 6-101 (505)
161 PHA03247 large tegument protei 84.4 2.5E+02 0.0054 42.7 26.4 14 188-201 2368-2381(3151)
162 PRK05580 primosome assembly pr 83.3 7.8 0.00017 50.6 11.7 96 57-156 171-267 (679)
163 KOG0923 mRNA splicing factor A 83.0 3.3 7.3E-05 53.9 8.0 106 75-188 472-606 (902)
164 TIGR03117 cas_csf4 CRISPR-asso 80.6 7 0.00015 51.0 9.8 86 75-163 470-566 (636)
165 smart00492 HELICc3 helicase su 77.2 13 0.00028 40.0 9.0 53 103-158 25-79 (141)
166 PRK10917 ATP-dependent DNA hel 76.5 14 0.0003 48.2 10.8 96 58-155 292-391 (681)
167 smart00491 HELICc2 helicase su 75.8 9.6 0.00021 40.9 7.6 45 114-158 32-80 (142)
168 PRK06646 DNA polymerase III su 74.6 26 0.00056 38.8 10.6 40 57-96 10-49 (154)
169 COG1110 Reverse gyrase [DNA re 73.2 14 0.0003 50.5 9.5 88 60-157 322-416 (1187)
170 KOG0926 DEAH-box RNA helicase 70.1 3.7 8.1E-05 54.3 3.5 66 119-187 620-703 (1172)
171 PRK14873 primosome assembly pr 69.9 27 0.00058 46.1 11.0 94 58-155 170-265 (665)
172 KOG0442 Structure-specific end 69.0 13 0.00028 49.8 7.9 96 3-98 286-400 (892)
173 PF04364 DNA_pol3_chi: DNA pol 67.5 25 0.00054 37.7 8.4 79 62-158 15-97 (137)
174 COG1198 PriA Primosomal protei 67.5 19 0.00041 48.0 9.0 82 55-139 224-306 (730)
175 TIGR00643 recG ATP-dependent D 64.5 33 0.00071 44.5 10.2 95 58-154 266-364 (630)
176 PRK05728 DNA polymerase III su 62.9 1.1E+02 0.0023 33.3 12.1 40 57-96 10-49 (142)
177 KOG0388 SNF2 family DNA-depend 60.6 4.2 9E-05 53.3 1.4 22 17-38 835-856 (1185)
178 TIGR02562 cas3_yersinia CRISPR 59.7 27 0.00059 48.2 8.5 96 80-178 761-884 (1110)
179 TIGR00580 mfd transcription-re 58.1 45 0.00098 45.6 10.2 94 58-153 482-579 (926)
180 KOG0948 Nuclear exosomal RNA h 55.0 27 0.00058 46.8 7.0 116 67-185 373-536 (1041)
181 COG0553 HepA Superfamily II DN 51.1 2.3 4.9E-05 54.4 -3.0 92 62-176 433-524 (866)
182 cd00046 DEXDc DEAD-like helica 50.9 76 0.0016 30.3 7.8 59 58-116 10-73 (144)
183 PRK10689 transcription-repair 48.7 89 0.0019 43.9 10.8 94 58-153 631-728 (1147)
184 PF10593 Z1: Z1 domain; Inter 48.4 91 0.002 36.6 9.4 85 80-170 91-175 (239)
185 cd00268 DEADc DEAD-box helicas 47.7 2E+02 0.0044 31.0 11.3 91 57-153 45-149 (203)
186 cd03028 GRX_PICOT_like Glutare 43.0 1E+02 0.0023 30.5 7.6 47 75-121 6-58 (90)
187 TIGR00365 monothiol glutaredox 42.5 1.6E+02 0.0035 30.0 8.9 49 75-123 10-64 (97)
188 cd00984 DnaB_C DnaB helicase C 41.2 1.1E+02 0.0024 34.2 8.3 39 145-183 196-240 (242)
189 KOG2340 Uncharacterized conser 40.0 48 0.001 43.2 5.8 107 59-167 533-642 (698)
190 COG2326 Uncharacterized conser 37.4 2.2E+02 0.0047 34.8 10.1 67 73-158 69-141 (270)
191 PF02178 AT_hook: AT hook moti 33.2 18 0.0004 26.3 0.5 11 430-440 1-11 (13)
192 COG1200 RecG RecG-like helicas 32.4 2E+02 0.0044 38.6 9.8 92 59-153 294-390 (677)
193 cd03418 GRX_GRXb_1_3_like Glut 31.7 2.3E+02 0.0049 26.2 7.5 57 78-135 1-58 (75)
194 COG1736 DPH2 Diphthamide synth 31.3 3.2E+02 0.0068 34.4 10.6 140 70-233 116-262 (347)
195 smart00384 AT_hook DNA binding 31.0 29 0.00063 29.4 1.4 14 430-443 1-14 (26)
196 PRK10824 glutaredoxin-4; Provi 31.0 2E+02 0.0043 30.9 7.8 64 76-140 14-83 (115)
197 PRK13766 Hef nuclease; Provisi 31.0 4.7E+02 0.01 34.8 12.8 94 57-157 38-141 (773)
198 PF06465 DUF1087: Domain of Un 29.4 18 0.00039 35.8 -0.0 21 339-359 43-63 (66)
199 cd01524 RHOD_Pyr_redox Member 29.0 1.2E+02 0.0027 29.2 5.5 38 74-111 49-86 (90)
200 cd06533 Glyco_transf_WecG_TagA 28.5 3.2E+02 0.007 30.3 9.2 72 62-135 32-106 (171)
201 TIGR01054 rgy reverse gyrase. 28.5 2.2E+02 0.0048 40.3 9.7 78 57-136 102-186 (1171)
202 smart00450 RHOD Rhodanese Homo 28.4 1.3E+02 0.0028 27.9 5.4 39 73-111 53-92 (100)
203 PF03808 Glyco_tran_WecB: Glyc 28.2 3.3E+02 0.0073 30.2 9.3 72 62-135 34-108 (172)
204 COG0610 Type I site-specific r 27.9 1.1E+02 0.0025 42.1 6.9 72 113-186 578-651 (962)
205 KOG0925 mRNA splicing factor A 27.8 1.2E+02 0.0026 39.6 6.5 126 61-192 236-391 (699)
206 COG0626 MetC Cystathionine bet 27.6 1.4E+02 0.0029 37.9 6.9 109 59-196 85-194 (396)
207 cd01121 Sms Sms (bacterial rad 27.6 4.5E+02 0.0097 33.0 11.1 127 58-188 92-264 (372)
208 TIGR01457 HAD-SF-IIA-hyp2 HAD- 27.5 1.2E+02 0.0027 34.9 6.1 99 66-170 23-133 (249)
209 PF13607 Succ_CoA_lig: Succiny 27.4 3.3E+02 0.0072 29.8 8.9 86 78-185 3-90 (138)
210 PRK14701 reverse gyrase; Provi 27.3 2.6E+02 0.0056 41.1 10.2 79 57-137 103-187 (1638)
211 TIGR00614 recQ_fam ATP-depende 27.1 5.3E+02 0.011 32.6 11.8 95 57-156 35-136 (470)
212 KOG0162 Myosin class I heavy c 26.2 4.5E+02 0.0098 36.1 11.0 23 487-509 917-939 (1106)
213 KOG1087 Cytosolic sorting prot 25.3 8.2E+02 0.018 32.1 13.0 71 193-265 195-271 (470)
214 cd01523 RHOD_Lact_B Member of 25.2 1.4E+02 0.003 29.2 5.2 38 74-111 59-96 (100)
215 PTZ00062 glutaredoxin; Provisi 24.5 3.5E+02 0.0077 31.5 8.9 55 65-120 102-162 (204)
216 cd01520 RHOD_YbbB Member of th 24.2 1.6E+02 0.0034 30.7 5.6 39 74-112 84-123 (128)
217 cd01518 RHOD_YceA Member of th 24.1 2.3E+02 0.005 27.9 6.5 38 74-111 59-97 (101)
218 cd01528 RHOD_2 Member of the R 23.4 1.8E+02 0.0039 28.7 5.6 37 75-111 57-94 (101)
219 COG4581 Superfamily II RNA hel 22.9 1.3E+02 0.0028 42.1 5.9 81 99-185 445-534 (1041)
220 COG0608 RecJ Single-stranded D 22.5 2.3E+02 0.0049 36.2 7.6 92 61-157 21-122 (491)
221 TIGR00696 wecB_tagA_cpsF bacte 22.2 5.2E+02 0.011 29.4 9.4 67 62-128 34-102 (177)
222 PRK05320 rhodanese superfamily 21.7 97 0.0021 36.7 4.0 38 75-112 174-212 (257)
223 PRK04537 ATP-dependent RNA hel 21.3 3.6E+02 0.0079 35.2 9.1 91 57-153 55-165 (572)
224 PRK11192 ATP-dependent RNA hel 21.0 3.7E+02 0.0081 33.1 8.8 92 57-154 47-154 (434)
225 PRK10590 ATP-dependent RNA hel 21.0 4.3E+02 0.0093 33.2 9.4 91 57-153 47-155 (456)
226 PF03709 OKR_DC_1_N: Orn/Lys/A 20.9 1.7E+02 0.0038 30.5 5.2 103 61-167 2-108 (115)
227 KOG0307 Vesicle coat complex C 20.2 1.4E+03 0.031 32.8 14.2 8 351-358 657-664 (1049)
228 COG1110 Reverse gyrase [DNA re 20.2 3.5E+02 0.0076 38.3 8.8 75 59-135 108-188 (1187)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.9e-57 Score=547.64 Aligned_cols=328 Identities=49% Similarity=0.788 Sum_probs=285.7
Q ss_pred CCCchhhHHHHHHHHHHHhcCCcccccccccccccCCcccc-ccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHH
Q 000096 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLD 90 (2260)
Q Consensus 12 GnsKgRSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l-~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLD 90 (2260)
++...++|+|.+|+|||||||||+|........ .++. ..||+.||||++|+++|.+|++.|||||+|+||+.+++
T Consensus 665 g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~----~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmd 740 (1157)
T KOG0386|consen 665 GKKGYKPLFNTIMQLRKLCNHPYLFANVENSYT----LHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMD 740 (1157)
T ss_pred ccccchhhhhHhHHHHHhcCCchhhhhhccccc----cccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHH
Confidence 567778999999999999999999953333222 2222 58999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccc
Q 000096 91 VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 170 (2260)
Q Consensus 91 ILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRA 170 (2260)
+|++||.+++|+|+|+||.|+.++|..+++.||.++++||+||++|++||+|||||.||+||+||.+|||+.++||.+|+
T Consensus 741 imEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 741 ILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred HHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCccCCCCCHHHHHHHHHHHHHHhhhcccCCCCCHHHHHH
Q 000096 171 HRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALND 250 (2260)
Q Consensus 171 HRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~FDnksSaEErrELLESLLre~kkEEeaeVLDDEELNE 250 (2260)
|||||+++|+|+||++.+++||+|+..+.+|++++.++|++|.|+++.+.++++.+|+.+++....+++.++.++++||+
T Consensus 821 hrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~ 900 (1157)
T KOG0386|consen 821 HRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNS 900 (1157)
T ss_pred HHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877767788899999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCchhHHHHHHHHhccccCCCCCCCCCcccccc
Q 000096 251 LLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRK 330 (2260)
Q Consensus 251 LLARSEeELdlFqsLDkERrEeEle~W~kllrg~g~~gE~~PelPsRLi~ddELp~lye~~ei~e~p~~~v~~n~~~krk 330 (2260)
+|+|+++|+++|.+||.++++.+... ....||+.+.+++++.-+... +..+.
T Consensus 901 ~larseeE~~~f~~md~~r~~~e~~~----------------~~k~rl~ee~e~p~~i~~~~~------------~~~~~ 952 (1157)
T KOG0386|consen 901 MLARSEEEFELFHKMDEERRATENQQ----------------EKKPRLVEEAELPADIYKRDQ------------GVERL 952 (1157)
T ss_pred HHhcchHHHHHHHHhhHHHHhhhhhc----------------cccchhhhhhhcHHHHHhcch------------hhhhh
Confidence 99999999999999999886544211 114588988998854433211 11111
Q ss_pred ccccCCcccccccCCccccccccccCCCCHHHHHHHHhcCCCC
Q 000096 331 GEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373 (2260)
Q Consensus 331 ~e~~~~~d~q~yGRG~R~Rk~V~Y~DglTEeQwlK~~~~eseD 373 (2260)
.+. ......+|||+|+|+.|+|+|.|||+||++.++.+..+
T Consensus 953 ~~~--~~~~~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~ 993 (1157)
T KOG0386|consen 953 SEE--EEEEKILGRGRRARKEVVYSDRLTEMQWLKENESVNKE 993 (1157)
T ss_pred hhh--hhhhccccccccccceeecccccchhhhhhhccccccc
Confidence 110 11223379999999999999999999999988876544
No 2
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.6e-49 Score=488.07 Aligned_cols=248 Identities=44% Similarity=0.663 Sum_probs=213.7
Q ss_pred HHHhccCCCchhhHHHHHHHHHHHhcCCcccccccccccccCC----ccccccccccccHHHHHHHHHHHhhcCCCeEEE
Q 000096 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP----KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLF 81 (2260)
Q Consensus 6 KiLgSiGnsKgRSLfNiLMQLRKICNHPYLfqlSeEEVd~LlP----e~~l~~LIRsSGKLELLdrLLkKLkenGhKVLI 81 (2260)
..|.+..+....+|+|++|.|||||||||||....+.+...+. ...+..++..||||-+|++||.+|++.||||||
T Consensus 625 ~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLI 704 (1373)
T KOG0384|consen 625 SALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLI 704 (1373)
T ss_pred HHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEE
Confidence 3444455555569999999999999999999877665433332 245678899999999999999999999999999
Q ss_pred EEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChh
Q 000096 82 FSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQ 161 (2260)
Q Consensus 82 FSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNPa 161 (2260)
||||+.|||+|++||..++|+|-||||++..+.|+++|++||++++..|||||||||||+||||.+||+|||||.+|||+
T Consensus 705 FSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQ 784 (1373)
T KOG0384|consen 705 FSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQ 784 (1373)
T ss_pred hHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCccC------CCCCHHHHHHHHHHHHHHhh
Q 000096 162 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFD------NNTSAEDRREYLESLLRECK 235 (2260)
Q Consensus 162 rDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~FD------nksSaEErrELLESLLre~k 235 (2260)
.++||+.|||||||++.|.||||||++|+||.|++++.+|+.|.+.||+.+.+. +.++.+ .|..||+.+.
T Consensus 785 NDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~----ELsaILKfGA 860 (1373)
T KOG0384|consen 785 NDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKE----ELSAILKFGA 860 (1373)
T ss_pred hHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHH----HHHHHHHhch
Confidence 999999999999999999999999999999999999999999999999987652 223444 4555555432
Q ss_pred h-----ccc-CCCCCHHHHHHHHHhChh
Q 000096 236 K-----EEA-APVLDDDALNDLLARSES 257 (2260)
Q Consensus 236 k-----EEe-aeVLDDEELNELLARSEe 257 (2260)
. ++. ...+...+|++||.|.+.
T Consensus 861 ~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 861 YELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred HHhhhccccccccccccCHHHHHhhccc
Confidence 1 122 224555788999998776
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.6e-48 Score=464.71 Aligned_cols=237 Identities=46% Similarity=0.706 Sum_probs=203.7
Q ss_pred hhhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHH
Q 000096 16 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDY 95 (2260)
Q Consensus 16 gRSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~ 95 (2260)
...|+|++|||||||||||||..... ..+-....+++..||||.+|++||.+|++.|+||||||||+.+||+|++|
T Consensus 431 k~kL~NI~mQLRKccnHPYLF~g~eP----g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDy 506 (971)
T KOG0385|consen 431 KTKLQNIMMQLRKCCNHPYLFDGAEP----GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDY 506 (971)
T ss_pred hhHHHHHHHHHHHhcCCccccCCCCC----CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHH
Confidence 46799999999999999999976322 12333456899999999999999999999999999999999999999999
Q ss_pred HhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCC
Q 000096 96 LTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 96 LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
+.+++|.|+||||+++.++|...|+.||++++.+|||||||||||+||||++||+||+||.+|||+.++||++|||||||
T Consensus 507 c~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ 586 (971)
T KOG0385|consen 507 CMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQ 586 (971)
T ss_pred HHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCccCCCCCHHHHHHHHHHHHHHhhhc----ccCCCCCHHHHHHH
Q 000096 176 KRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKE----EAAPVLDDDALNDL 251 (2260)
Q Consensus 176 KKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~FDnksSaEErrELLESLLre~kkE----EeaeVLDDEELNEL 251 (2260)
++.|+|||||+.+||||+|++++..|+.|.+.||+.|......+.......+-.+++.+... .+.. ..+ +|+++
T Consensus 587 ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~-~~d-Did~i 664 (971)
T KOG0385|consen 587 KKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKEST-ISD-DIDRI 664 (971)
T ss_pred cCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccc-cch-hHHHH
Confidence 99999999999999999999999999999999999995544333223334444455543221 1222 222 88888
Q ss_pred HHhChhh
Q 000096 252 LARSESE 258 (2260)
Q Consensus 252 LARSEeE 258 (2260)
|.+.+..
T Consensus 665 l~~~e~k 671 (971)
T KOG0385|consen 665 LERGEEK 671 (971)
T ss_pred HHhhhhh
Confidence 8887653
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.1e-39 Score=410.58 Aligned_cols=238 Identities=46% Similarity=0.745 Sum_probs=204.9
Q ss_pred hhhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHH
Q 000096 16 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDY 95 (2260)
Q Consensus 16 gRSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~ 95 (2260)
...+++++|+||+|||||||+....... +......++..|+|+.+|.+||.++...++||||||||+.++++|+++
T Consensus 431 ~~~LlnilmqLRk~cnHP~L~~~~ep~~----~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~ 506 (1033)
T PLN03142 431 RKRLLNIAMQLRKCCNHPYLFQGAEPGP----PYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDY 506 (1033)
T ss_pred HHHHHHHHHHHHHHhCCHHhhhcccccC----cccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHH
Confidence 4569999999999999999986432211 111234577889999999999999999999999999999999999999
Q ss_pred HhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCC
Q 000096 96 LTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 96 LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
|..+++.|++|+|+++..+|+.+|++||..++..+|||++|++||+||||+.|++||+||++|||+.++||+||+|||||
T Consensus 507 L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQ 586 (1033)
T PLN03142 507 LMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQ 586 (1033)
T ss_pred HHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCccCCC--CCHHHHHHHHHHHHHHhhh---cccCCCCCHHHHHH
Q 000096 176 KRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNN--TSAEDRREYLESLLRECKK---EEAAPVLDDDALND 250 (2260)
Q Consensus 176 KKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~FDnk--sSaEErrELLESLLre~kk---EEeaeVLDDEELNE 250 (2260)
+++|+||||++.+||||+|++++..|+.+...+++.|.+... .+.++ |..+|+.+.. ......+.+++|+.
T Consensus 587 kk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~e----L~~ll~~ga~~~f~~~~~~~~~~did~ 662 (1033)
T PLN03142 587 KKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDE----LLQMVRYGAEMVFSSKDSTITDEDIDR 662 (1033)
T ss_pred CceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHH----HHHHHHhChHHhhhccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999876543 23333 4445543321 12234578999999
Q ss_pred HHHhChhhHHH
Q 000096 251 LLARSESEIDV 261 (2260)
Q Consensus 251 LLARSEeELdl 261 (2260)
||+|++.....
T Consensus 663 il~~~~~~~~~ 673 (1033)
T PLN03142 663 IIAKGEEATAE 673 (1033)
T ss_pred HHHhcHHHHHH
Confidence 99999876643
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=377.43 Aligned_cols=206 Identities=44% Similarity=0.720 Sum_probs=174.1
Q ss_pred ccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLL 134 (2260)
+...+|||+.|.-||++|+..|||||||+||+.|||+|+.||.++||.|+||||.++.++|+.++++||. |..+|||||
T Consensus 1255 iqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNa-D~RIfcfIL 1333 (1958)
T KOG0391|consen 1255 IQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNA-DRRIFCFIL 1333 (1958)
T ss_pred eecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcC-CCceEEEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999999999976 778999999
Q ss_pred cccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCcc
Q 000096 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 214 (2260)
Q Consensus 135 STRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~F 214 (2260)
+|+.||.||||+.||+|||||.+|||.++.||++|||||||+++|+|||||..+||||+|+.++..|+.|.+.+|+.|.|
T Consensus 1334 STrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdf 1413 (1958)
T KOG0391|consen 1334 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDF 1413 (1958)
T ss_pred eccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCC-CHHHHHHHHHHHHHHh-----hhcccCCCCCHH-HHHHHHHhChhhHHH
Q 000096 215 DNNT-SAEDRREYLESLLREC-----KKEEAAPVLDDD-ALNDLLARSESEIDV 261 (2260)
Q Consensus 215 Dnks-SaEErrELLESLLre~-----kkEEeaeVLDDE-ELNELLARSEeELdl 261 (2260)
...+ .....+++|..-+... ...+...++.++ .+...|+..++|-++
T Consensus 1414 Tt~ff~q~ti~dLFd~~~p~s~~~~~~~ad~~v~~see~~le~alA~aede~dV 1467 (1958)
T KOG0391|consen 1414 TTAFFKQRTIRDLFDVYLPESDVGVPAKADEFVVASEEPSLEVALAPAEDEEDV 1467 (1958)
T ss_pred cHHHHhhhhHHHHhcCCCccccCCCCccchhhhhhcCcchHHHHhhhhcchHHH
Confidence 5433 2333333333222110 011111122222 377788877776553
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-36 Score=365.66 Aligned_cols=161 Identities=45% Similarity=0.669 Sum_probs=154.3
Q ss_pred ccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 53 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 53 ~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
..+|-.|||+..|..||.+++..|+||||||||+.|||||+.+|+..++.|+||||+|....|+.+|+.||. +..++||
T Consensus 754 d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVF 832 (941)
T KOG0389|consen 754 DDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVF 832 (941)
T ss_pred CchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEE
Confidence 356889999999999999999999999999999999999999999999999999999999999999999976 5569999
Q ss_pred EEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 000096 133 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212 (2260)
Q Consensus 133 LLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG 212 (2260)
||||+|||.||||++||+||+||.++||..+.||.+||||+||+|+|+|||||+++||||.|+++++.|+.|...+...+
T Consensus 833 LLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389|consen 833 LLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred EEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cc
Q 000096 213 FF 214 (2260)
Q Consensus 213 ~F 214 (2260)
+-
T Consensus 913 k~ 914 (941)
T KOG0389|consen 913 KG 914 (941)
T ss_pred cc
Confidence 43
No 7
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.5e-36 Score=363.94 Aligned_cols=207 Identities=39% Similarity=0.629 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH
Q 000096 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 96 (2260)
Q Consensus 17 RSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L 96 (2260)
+.+|.-+.-||+|||||-|+....+.... ... +...+..|||++.|..||..++..|+|||+|+|..+||++|+.+|
T Consensus 490 ~~~l~Gi~iLrkICnHPdll~~~~~~~~~--~~D-~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL 566 (923)
T KOG0387|consen 490 RNCLSGIDILRKICNHPDLLDRRDEDEKQ--GPD-YEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFL 566 (923)
T ss_pred ccceechHHHHhhcCCcccccCccccccc--CCC-cCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHH
Confidence 34677788999999999998654322111 111 225678899999999999999999999999999999999999999
Q ss_pred h-hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCC
Q 000096 97 T-FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 97 r-krGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
. ..+|.|+|+||.|+...|+.++++||. +..++||||+|++||+||||+.||.||+|||+|||..+.||..|+|||||
T Consensus 567 ~~~~~ysylRmDGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 567 RRAKGYSYLRMDGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred HhcCCceEEEecCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcC
Confidence 8 689999999999999999999999976 45589999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCccCCCCCHHHHHHHH
Q 000096 176 KRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYL 227 (2260)
Q Consensus 176 KKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~FDnksSaEErrELL 227 (2260)
+|+|.||||++.+||||+||.++.+|..|.+.++..-+....+...+..++|
T Consensus 646 kkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLF 697 (923)
T KOG0387|consen 646 KKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLF 697 (923)
T ss_pred ccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHh
Confidence 9999999999999999999999999999999999876555555444444433
No 8
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.4e-33 Score=348.50 Aligned_cols=195 Identities=38% Similarity=0.652 Sum_probs=167.9
Q ss_pred hhhHHHHHHHHHHHhcCCcccccc-cccccccCC--ccccccc--cccccHHHHHHHHHHHhh--------------cCC
Q 000096 16 GRSVHNSVMELRNICNHPYLSQLH-AEEVDTLIP--KHYLPPI--VRLCGKLEMLDRLLPKLK--------------ATD 76 (2260)
Q Consensus 16 gRSLfNiLMQLRKICNHPYLfqlS-eEEVd~LlP--e~~l~~L--IRsSGKLELLdrLLkKLk--------------enG 76 (2260)
...+|.+|..|||+||||.|+... ..+...... .+....+ +..|+|+.+|.+||...- -.+
T Consensus 1261 ~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsq 1340 (1549)
T KOG0392|consen 1261 KTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQ 1340 (1549)
T ss_pred hHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhcc
Confidence 568999999999999999997532 111111000 1112223 678999999999998763 146
Q ss_pred CeEEEEEcchhHHHHHHHHHhhc---CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe
Q 000096 77 HRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 77 hKVLIFSQfTdtLDILED~Lrkr---GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII 153 (2260)
||+|||||++.++|+++.-|-.. .+.|+|+||++++.+|++++++||. |+.+.|+|++|.+||+||||++||+|||
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEE
Confidence 99999999999999999988543 5679999999999999999999976 6668999999999999999999999999
Q ss_pred eCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcC
Q 000096 154 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 211 (2260)
Q Consensus 154 FDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqa 211 (2260)
++.+|||.+++||++|+|||||||.|+|||||++||+||+|+-+++.|+++++.++..
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInq 1477 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQ 1477 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999974
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.97 E-value=8.1e-32 Score=320.29 Aligned_cols=160 Identities=50% Similarity=0.837 Sum_probs=154.1
Q ss_pred cccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 54 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 54 ~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
.++..||||..|+.||.+|++.|||||+|.||+.|+++|++||.+++|.|+||||+.+..+|..++..|+. +.+||||
T Consensus 1022 ~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFL 1099 (1185)
T KOG0388|consen 1022 TFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFL 1099 (1185)
T ss_pred hhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999966 7799999
Q ss_pred EcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCc
Q 000096 134 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGF 213 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~ 213 (2260)
|+|+|||+||||++||+|||||.+|||..+.||++|+||+||+++|+|||||+.+||||+|+.++.+|..+.+.||..+.
T Consensus 1100 LSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~ 1179 (1185)
T KOG0388|consen 1100 LSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGNI 1179 (1185)
T ss_pred EecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cC
Q 000096 214 FD 215 (2260)
Q Consensus 214 FD 215 (2260)
|.
T Consensus 1180 ~q 1181 (1185)
T KOG0388|consen 1180 FQ 1181 (1185)
T ss_pred cc
Confidence 54
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.97 E-value=5e-31 Score=323.34 Aligned_cols=196 Identities=37% Similarity=0.555 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHhcCCccccccccc-ccc-c-------CCc--cccccccccccHHHHHHHHHHHhhcC-CCeEEEEEcch
Q 000096 19 VHNSVMELRNICNHPYLSQLHAEE-VDT-L-------IPK--HYLPPIVRLCGKLEMLDRLLPKLKAT-DHRVLFFSTMT 86 (2260)
Q Consensus 19 LfNiLMQLRKICNHPYLfqlSeEE-Vd~-L-------lPe--~~l~~LIRsSGKLELLdrLLkKLken-GhKVLIFSQfT 86 (2260)
-+..+..|+++||||+|+...... ... . .+. .....-...|+||..|..||....+. -.++++.++++
T Consensus 526 ~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~ 605 (776)
T KOG0390|consen 526 ALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYT 605 (776)
T ss_pred hhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHH
Confidence 677888999999999998522111 000 0 011 01112233589999999999655543 37788888999
Q ss_pred hHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhh
Q 000096 87 RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQA 166 (2260)
Q Consensus 87 dtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQA 166 (2260)
.++++++..++++|+.+++|||.++..+|+.+++.||++.+..+|||+|++|||+||||.+|++||+||++|||+.+.||
T Consensus 606 ~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QA 685 (776)
T KOG0390|consen 606 QTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQA 685 (776)
T ss_pred HHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred cccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCcc
Q 000096 167 QARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 214 (2260)
Q Consensus 167 IGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~F 214 (2260)
++|+||.||+|.|+||||++.+|+||+||+++..|..+-..+++....
T Consensus 686 maR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~ 733 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEED 733 (776)
T ss_pred HHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccc
Confidence 999999999999999999999999999999999999999999886543
No 11
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.4e-29 Score=307.12 Aligned_cols=195 Identities=45% Similarity=0.686 Sum_probs=175.1
Q ss_pred hhhHHHHHHHHHHHhcCCcccccc-ccccccc--------CCccccccccccc-cHHHHHHHHH-HHhhcCCC--eEEEE
Q 000096 16 GRSVHNSVMELRNICNHPYLSQLH-AEEVDTL--------IPKHYLPPIVRLC-GKLEMLDRLL-PKLKATDH--RVLFF 82 (2260)
Q Consensus 16 gRSLfNiLMQLRKICNHPYLfqlS-eEEVd~L--------lPe~~l~~LIRsS-GKLELLdrLL-kKLkenGh--KVLIF 82 (2260)
...+++.+++||++||||+++... ....... ........++..+ +|+..|.++| ..+...++ |+|||
T Consensus 638 ~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlif 717 (866)
T COG0553 638 ELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIF 717 (866)
T ss_pred hhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEE
Confidence 568999999999999999998654 1111100 1111234567788 9999999999 78889998 99999
Q ss_pred EcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhh
Q 000096 83 STMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV 162 (2260)
Q Consensus 83 SQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNPar 162 (2260)
+||+.++++|+.+|+..++.|++++|+++...|+.++++|+++ ..++|||+++++||.||||+.|++||+||++|||+.
T Consensus 718 sq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~ 796 (866)
T COG0553 718 SQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAV 796 (866)
T ss_pred eCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHH
Confidence 9999999999999999999999999999999999999999876 668999999999999999999999999999999999
Q ss_pred hhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcC
Q 000096 163 DLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 211 (2260)
Q Consensus 163 DLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqa 211 (2260)
+.||++|+|||||++.|.||||++++|+||+|++++..|+.+...+++.
T Consensus 797 ~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 797 ELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999985
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.95 E-value=2.8e-28 Score=284.02 Aligned_cols=157 Identities=36% Similarity=0.506 Sum_probs=149.6
Q ss_pred ccccccHHHHHHHHHHHhhcCC--CeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLKATD--HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenG--hKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
-|+.|.|+++|.+-|..+.++. -|.|||+||+.|||+|.-.|.+.|+.++.|.|+|+...|...|+.| ..+..|+||
T Consensus 615 ~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F-~nd~~c~vf 693 (791)
T KOG1002|consen 615 DWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYF-KNDIDCRVF 693 (791)
T ss_pred hhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHh-ccCCCeEEE
Confidence 3778999999999998887654 6899999999999999999999999999999999999999999999 668899999
Q ss_pred EEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 000096 133 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212 (2260)
Q Consensus 133 LLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG 212 (2260)
|++.+|||..|||+.|.+|+++||||||+.+.||++|+|||||.++|+|.||+.++|||++|++++++|..+++..|+..
T Consensus 694 LvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 694 LVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQD 773 (791)
T ss_pred EEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.95 E-value=3.6e-28 Score=294.62 Aligned_cols=209 Identities=28% Similarity=0.438 Sum_probs=174.3
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh----------------------cCceEEEEeCCCCHH
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----------------------KQYRYLRLDGHTSGG 113 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk----------------------rGIkyvRLDGSTSqE 113 (2260)
+..|+||-+|.+||+...+-|.|+|||+|+...|++|+.||.. .|..|+||||++...
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 4579999999999999999999999999999999999999942 367899999999999
Q ss_pred HHHHHHHHhhCCC-CCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHH
Q 000096 114 DRGALIDKFNQQD-SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 192 (2260)
Q Consensus 114 ERQeIIDrFNk~D-Sei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEE 192 (2260)
+|+.+.++||.+. -..++|||+|+||++||||.+||.|||||-.|||..+.|+|-|+||+||+|+|+|||||+.+|+|+
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 9999999999864 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccCCCCCHHHHHHHHHHH---HHHhhhcccCCCCCHHHHHHHHHhChhhHHHHHH
Q 000096 193 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL---LRECKKEEAAPVLDDDALNDLLARSESEIDVFES 264 (2260)
Q Consensus 193 KIyERArrKLdLAekVIqaG~FDnksSaEErrELLESL---Lre~kkEEeaeVLDDEELNELLARSEeELdlFqs 264 (2260)
+||.++..|..+..+|++.......++.+++.+++.-- +......+......|..+.++|......+--|..
T Consensus 1282 KIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~e 1356 (1567)
T KOG1015|consen 1282 KIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPDLDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHE 1356 (1567)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCccCCcccccccccCCchhHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999877666666666655554311 1110011222345667777777666655544433
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=4.8e-27 Score=281.56 Aligned_cols=158 Identities=32% Similarity=0.517 Sum_probs=151.6
Q ss_pred cccccccHHHHHHHHHHHh-hcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 54 PIVRLCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 54 ~LIRsSGKLELLdrLLkKL-kenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
...+.|.|+..++.+|..+ ....+|++|.+||+.+|+++...|...|+.|..|+|.....+|+.+++.||..+...+|+
T Consensus 723 e~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVm 802 (901)
T KOG4439|consen 723 EPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVM 802 (901)
T ss_pred ccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEE
Confidence 3456899999999999887 566799999999999999999999999999999999999999999999999999989999
Q ss_pred EEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcC
Q 000096 133 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 211 (2260)
Q Consensus 133 LLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqa 211 (2260)
|++.-|||.||||+.|+|+|++|++|||+.+.||++|+||+||+|+|+||||++++|||++|..++..|++++..|+..
T Consensus 803 LlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G 881 (901)
T KOG4439|consen 803 LLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTG 881 (901)
T ss_pred EEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
No 15
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=4.2e-23 Score=260.61 Aligned_cols=154 Identities=22% Similarity=0.223 Sum_probs=141.7
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH-hhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEE
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L-rkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLL 134 (2260)
+..++|+.+|.++|..+ .++|+||||++..++++|.++| ...||++..|||+++..+|.++++.|+..+..++ +|+
T Consensus 475 ~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLI 551 (956)
T PRK04914 475 WNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLL 551 (956)
T ss_pred cccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEE
Confidence 45578999999999865 4789999999999999999999 5679999999999999999999999987554555 467
Q ss_pred cccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 000096 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212 (2260)
Q Consensus 135 STRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG 212 (2260)
+|++||+||||+.|++||+||+||||..|+||+||+||+||++.|.||+++..+|++++|+++...|+++++..+..+
T Consensus 552 sTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~ 629 (956)
T PRK04914 552 CSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (956)
T ss_pred echhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCH
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999998765
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=1.4e-20 Score=221.03 Aligned_cols=149 Identities=30% Similarity=0.429 Sum_probs=138.3
Q ss_pred cHHHHHHHHHHH----hhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 60 GKLEMLDRLLPK----LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 60 GKLELLdrLLkK----LkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
.|+..+.+.|.. ..+.+.|+|||+++..+||-|+.++..+++.++||||+++..+|+.+++.|+ .+.+++|-||+
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ-~seev~VAvls 550 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ-TSEEVRVAVLS 550 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc-cccceEEEEEE
Confidence 577777777765 3456799999999999999999999999999999999999999999999994 56789999999
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhh
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 209 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVI 209 (2260)
..|+|.||+|+.|+.|+|.+++|||...+||.+|+|||||+..|.||+|++++|+|+++|..++.|+.....+-
T Consensus 551 ItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 551 ITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877653
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=4.4e-21 Score=230.65 Aligned_cols=169 Identities=33% Similarity=0.525 Sum_probs=151.4
Q ss_pred ccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc------------------CceEEEEeCCCCHHHHH
Q 000096 55 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------QYRYLRLDGHTSGGDRG 116 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr------------------GIkyvRLDGSTSqEERQ 116 (2260)
+...+.|+-++.++|..-..-|.|+|||+|....|+.|+++|..+ ++.|++++|.++..+|.
T Consensus 698 vLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~re 777 (1387)
T KOG1016|consen 698 VLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADRE 777 (1387)
T ss_pred cccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHH
Confidence 344567777777777776777899999999999999999999643 35699999999999999
Q ss_pred HHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHH
Q 000096 117 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 196 (2260)
Q Consensus 117 eIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyE 196 (2260)
++|++||.+.+-.+.|||+|+++..|+||..|+.+|+||.-|||..+.||+.|++|+||+|+++|||||..+++|.+||.
T Consensus 778 kLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 778 KLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred HHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 99999998777667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCccCCCCCHHHH
Q 000096 197 SAEHKLGVANQSITAGFFDNNTSAEDR 223 (2260)
Q Consensus 197 RArrKLdLAekVIqaG~FDnksSaEEr 223 (2260)
|+..|..+.++++++-.-+.+++..+.
T Consensus 858 RQIsKqGmsdRvVDd~np~an~s~Ke~ 884 (1387)
T KOG1016|consen 858 RQISKQGMSDRVVDDANPDANISQKEL 884 (1387)
T ss_pred HHHhhccchhhhhcccCccccccHHHH
Confidence 999999999999987666666665543
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=1.7e-20 Score=230.75 Aligned_cols=151 Identities=33% Similarity=0.469 Sum_probs=141.6
Q ss_pred ccHHHHHHHHHHHhhcCCC-eEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 59 CGKLEMLDRLLPKLKATDH-RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGh-KVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
|.|+..+.++|........ |+|||+|++.++++++..|...++.+.+++|.++...|.+.+..|+ .+....|+|++.+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~~~~vll~Slk 599 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDPLVTALLMSLK 599 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCccHHHHHHHHH
Confidence 7788888888885554445 9999999999999999999999999999999999999999999997 6788899999999
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhc
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 210 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIq 210 (2260)
||+.||||+.|+|||++|++|||..+.|||+|+||+||+++|.|+||+..+|+||+|+.++.+|+.+...+++
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887664
No 19
>PRK13766 Hef nuclease; Provisional
Probab=99.72 E-value=7.1e-17 Score=199.73 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=129.8
Q ss_pred ccccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCC--------CCHHHHHHHHHHhhCCC
Q 000096 57 RLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH--------TSGGDRGALIDKFNQQD 126 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGS--------TSqEERQeIIDrFNk~D 126 (2260)
...+|+..|.++|.++. ..+.|+||||++.+++++|.++|...++.+.+++|. ++..+|.+++++|+.+.
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~ 423 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE 423 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC
Confidence 45789999999998876 567999999999999999999999999999999997 88899999999998765
Q ss_pred CCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000096 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 206 (2260)
Q Consensus 127 Sei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAe 206 (2260)
.. +|++|.++++|+|++.+++||+||++||+.+++||+||++|.|+ .+||.|++.+|+||.+|....+|...+.
T Consensus 424 ~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~~ 497 (773)
T PRK13766 424 FN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKMK 497 (773)
T ss_pred CC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHHH
Confidence 43 67888999999999999999999999999999999888888765 7899999999999999988877766554
Q ss_pred hh
Q 000096 207 QS 208 (2260)
Q Consensus 207 kV 208 (2260)
..
T Consensus 498 ~~ 499 (773)
T PRK13766 498 EE 499 (773)
T ss_pred HH
Confidence 33
No 20
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.70 E-value=1.1e-16 Score=152.45 Aligned_cols=120 Identities=28% Similarity=0.460 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccc
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 139 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAG 139 (2260)
.|+..|..++.+....+.++|||+.+...++.+.++|...++.+..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6999999999987767899999999999999999999988999999999999999999999997765 3478899999
Q ss_pred ccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 140 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 140 GeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
++|+|++.+++||+++++|++..++|++||++|.||++.|++|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877764
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.63 E-value=1.3e-16 Score=196.24 Aligned_cols=127 Identities=46% Similarity=0.744 Sum_probs=112.0
Q ss_pred CCchhhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHH
Q 000096 13 NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM 92 (2260)
Q Consensus 13 nsKgRSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDIL 92 (2260)
...+-+++|++|+|||+|||||++....... .........+++.|+|+.+|..++++++..||||+||+||+.++|+|
T Consensus 570 ~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~--~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldll 647 (696)
T KOG0383|consen 570 GVHQYSLLNIVMELRKQCNHPYLSPLEEPLE--ENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLL 647 (696)
T ss_pred cchhHHHHHHHHHHHHhhcCcccCccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 3445689999999999999999998722111 11122245789999999999999999999999999999999999999
Q ss_pred HHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccc
Q 000096 93 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 142 (2260)
Q Consensus 93 ED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeG 142 (2260)
+++|.+.+ .|.||+|.....+|+..|++||.+++.-+|||+||+|||+|
T Consensus 648 ed~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 648 EDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999 99999999999999999999999999999999999999987
No 22
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.6e-15 Score=177.73 Aligned_cols=192 Identities=20% Similarity=0.314 Sum_probs=144.4
Q ss_pred hHHHHHHhccCCCchhhHHHHHH------HHHHHhcCCcccccccccc--cccCCccccccccccccHHHHHHHHHHHhh
Q 000096 2 KRVEENLGSIGNSKGRSVHNSVM------ELRNICNHPYLSQLHAEEV--DTLIPKHYLPPIVRLCGKLEMLDRLLPKLK 73 (2260)
Q Consensus 2 KRVEKiLgSiGnsKgRSLfNiLM------QLRKICNHPYLfqlSeEEV--d~LlPe~~l~~LIRsSGKLELLdrLLkKLk 73 (2260)
+.++.++..+...++..+|.+.| -.++++++|..+....... ......+++...-....|+.+|..+|...
T Consensus 193 ~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~- 271 (513)
T COG0513 193 DDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDE- 271 (513)
T ss_pred HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcC-
Confidence 45777888887766666665554 3567778887655442222 11111222212111225999999999854
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII 153 (2260)
...++|||+.....++.|...|..+|+++..|||++++.+|.+.+++|+++... +|++|+++++||++...++||+
T Consensus 272 -~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~---vLVaTDvaaRGiDi~~v~~Vin 347 (513)
T COG0513 272 -DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR---VLVATDVAARGLDIPDVSHVIN 347 (513)
T ss_pred -CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEEechhhccCCccccceeEE
Confidence 334899999999999999999999999999999999999999999999866555 7899999999999999999999
Q ss_pred eCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000096 154 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 201 (2260)
Q Consensus 154 FDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrK 201 (2260)
||++.++..|.||+||++|.|. .-..+.|++. .-|...+..+.+.
T Consensus 348 yD~p~~~e~yvHRiGRTgRaG~--~G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 348 YDLPLDPEDYVHRIGRTGRAGR--KGVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred ccCCCCHHHheeccCccccCCC--CCeEEEEeCc-HHHHHHHHHHHHH
Confidence 9999999999999999999994 4456667765 2244444444443
No 23
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=1.7e-14 Score=173.64 Aligned_cols=125 Identities=22% Similarity=0.380 Sum_probs=113.1
Q ss_pred ccccccHHHHHHHHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLk-enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
.+...+|...|..+|..+. ..+.|+||||++...++.|..+|+..+|++..|||..++.+|..+++.|+.++.. +|
T Consensus 319 ~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~---vL 395 (519)
T KOG0331|consen 319 VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP---VL 395 (519)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc---eE
Confidence 3446789999999998876 4567999999999999999999999999999999999999999999999877766 89
Q ss_pred EcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 134 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
++|+++++||++...++||+||+|-|...|.||+||.+|.|++-..+.|
T Consensus 396 VATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tf 444 (519)
T KOG0331|consen 396 VATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITF 444 (519)
T ss_pred EEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEE
Confidence 9999999999999999999999999999999999999998877654433
No 24
>PTZ00110 helicase; Provisional
Probab=99.57 E-value=1.3e-14 Score=175.56 Aligned_cols=128 Identities=20% Similarity=0.312 Sum_probs=114.6
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
+....|...|..+|..+...+.|+||||+....++.|...|+..++.+..+||+++..+|..++++|+.+... +|++
T Consensus 357 ~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~---ILVa 433 (545)
T PTZ00110 357 VEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP---IMIA 433 (545)
T ss_pred EechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc---EEEE
Confidence 3456789999999988776789999999999999999999999999999999999999999999999776554 6899
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
|+++++|||+..+++||+||+++++..|.||+||++|.|.+.. +|.|++.+
T Consensus 434 Tdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 434 TDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred cchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 9999999999999999999999999999999999999997654 46666654
No 25
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.4e-14 Score=159.74 Aligned_cols=163 Identities=17% Similarity=0.271 Sum_probs=134.5
Q ss_pred HHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCc
Q 000096 22 SVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY 101 (2260)
Q Consensus 22 iLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGI 101 (2260)
++.--.+...+|.-+....++...-....|+-..-+...|+..|..|...| .-.+.+|||+.+..+|||.+.|+..++
T Consensus 214 ilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nf 291 (400)
T KOG0328|consen 214 ILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANF 291 (400)
T ss_pred HHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCc
Confidence 344456777777655444343332223455555566678999999999876 457899999999999999999999999
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEE
Q 000096 102 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 181 (2260)
Q Consensus 102 kyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrV 181 (2260)
.+..+||.+.+++|.+++..|+.+++. +|++|++-++|++++..+.||+||+|-|...|+|||||.+|+|.+. ..
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--va 366 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VA 366 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eE
Confidence 999999999999999999999988887 8999999999999999999999999999999999999999999654 55
Q ss_pred EEEEeCCCHH
Q 000096 182 LRFETVQTVE 191 (2260)
Q Consensus 182 YRLITegTVE 191 (2260)
.+|+..+-++
T Consensus 367 inFVk~~d~~ 376 (400)
T KOG0328|consen 367 INFVKSDDLR 376 (400)
T ss_pred EEEecHHHHH
Confidence 6777665444
No 26
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=9.7e-14 Score=172.90 Aligned_cols=133 Identities=16% Similarity=0.194 Sum_probs=112.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+..+..||......++|+||||++...++.+...| + ...|+|.++..+|.+++++|+.+ ..+.+ |+.++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~-~~i~v-Lv~Sk 550 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHN-PKVNT-IFLSK 550 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhC-CCccE-EEEec
Confidence 456888888888876568899999999999888888877 3 34589999999999999999643 23444 55569
Q ss_pred ccccccCCCccCeeEeeCCCC-ChhhhhhhcccccccCCcCc-----EEEEEEEeCCCHHHHHHHH
Q 000096 138 AGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRD-----VLVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPW-NParDLQAIGRAHRIGQKKE-----VrVYRLITegTVEEKIyER 197 (2260)
++++||||+.|++||+++++| ++..+.||+||+.|.+..+. .++|.|++.+|.|+....+
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH
Confidence 999999999999999999987 99999999999999987654 7899999999999877543
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.50 E-value=1.8e-13 Score=159.20 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=106.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.+|..++.. ....++|||++....++.|..+|...++.+..+||+++..+|..++++|+.+... +|++|+
T Consensus 229 ~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~---vLVaTd 303 (434)
T PRK11192 229 LEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN---VLVATD 303 (434)
T ss_pred HHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc---EEEEcc
Confidence 34688888888763 2468999999999999999999999999999999999999999999999776554 788999
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
++++|||+..+++||+||+++++..|.||+||++|.|.+..+.+|
T Consensus 304 ~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 304 VAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred ccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 999999999999999999999999999999999999976654444
No 28
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.50 E-value=2.6e-13 Score=162.02 Aligned_cols=147 Identities=23% Similarity=0.279 Sum_probs=130.1
Q ss_pred cccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhcCceEE-EEeC--------CCCHHHHHHHHHHhhCCC
Q 000096 58 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RLDG--------HTSGGDRGALIDKFNQQD 126 (2260)
Q Consensus 58 sSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~LrkrGIkyv-RLDG--------STSqEERQeIIDrFNk~D 126 (2260)
.-+||+.|.+||.+.. ..+.|+|||++|+++.+.|.++|...++... ++-| +|++.+..++|++|+++.
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge 425 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE 425 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC
Confidence 3589999999998776 4568999999999999999999998887775 6666 489999999999997765
Q ss_pred CCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000096 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 206 (2260)
Q Consensus 127 Sei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAe 206 (2260)
.+ +|++|.+|-+|||+..+|.|||||+--.+-+.+||.||.+|- +.-+||-|++++|-|+.-|....+|...+.
T Consensus 426 ~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 426 YN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred ce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 54 789999999999999999999999999999999999999884 788999999999999999999999977666
Q ss_pred hhhc
Q 000096 207 QSIT 210 (2260)
Q Consensus 207 kVIq 210 (2260)
..+.
T Consensus 500 e~i~ 503 (542)
T COG1111 500 ESIR 503 (542)
T ss_pred HHHH
Confidence 5554
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.50 E-value=2.6e-13 Score=159.54 Aligned_cols=124 Identities=22% Similarity=0.376 Sum_probs=109.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+..|.++|... ...++||||+....++.|.++|...++.+..+||++++.+|..+++.|+.+... +|++|+
T Consensus 226 ~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~---vLVaTd 300 (460)
T PRK11776 226 PDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS---VLVATD 300 (460)
T ss_pred cHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEec
Confidence 345899999998743 467899999999999999999999999999999999999999999999776554 788999
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
++++|||+.++++||+||+++++..|.||+||++|.|+.. ..|.|+..+
T Consensus 301 v~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 301 VAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred ccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 9999999999999999999999999999999999999754 456666553
No 30
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.48 E-value=1.5e-13 Score=163.79 Aligned_cols=172 Identities=18% Similarity=0.237 Sum_probs=134.3
Q ss_pred HHHHHHhccCCCchhhHHHHHH------HHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCC
Q 000096 3 RVEENLGSIGNSKGRSVHNSVM------ELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATD 76 (2260)
Q Consensus 3 RVEKiLgSiGnsKgRSLfNiLM------QLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenG 76 (2260)
++++++......++...|.+.| -+|+....|..+.........-...+ .-..+..+.|+..|..+|... ..
T Consensus 441 ~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ-~v~m~~ed~k~kkL~eil~~~--~~ 517 (673)
T KOG0333|consen 441 RVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQ-KVEMVSEDEKRKKLIEILESN--FD 517 (673)
T ss_pred HHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchhe-EEEEecchHHHHHHHHHHHhC--CC
Confidence 3455555555455555555544 36777777866543221111100011 113455678999999999865 56
Q ss_pred CeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCC
Q 000096 77 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 156 (2260)
Q Consensus 77 hKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDp 156 (2260)
..+|||.+....++.|.+.|.+.||++++|||+-++++|..++..|+.+... +|++|+++|+||++++..+||+||.
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC---EEEEecccccCCCCCccceeeecch
Confidence 8999999999999999999999999999999999999999999999887666 7899999999999999999999999
Q ss_pred CCChhhhhhhcccccccCCcCcEE
Q 000096 157 DWNPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 157 PWNParDLQAIGRAHRIGQKKEVr 180 (2260)
.-+-..|.|||||.+|.|+...+.
T Consensus 595 aksieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred hhhHHHHHHHhccccccccCceeE
Confidence 999999999999999999876543
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.48 E-value=4.1e-13 Score=158.85 Aligned_cols=125 Identities=18% Similarity=0.276 Sum_probs=109.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
..+.|..+|..+|.. ....|+||||+....++.|.++|...++.+..++|.++..+|.++++.|+.++.. +|++|
T Consensus 318 ~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~---vLvaT 392 (475)
T PRK01297 318 AGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR---VLVAT 392 (475)
T ss_pred cchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc---EEEEc
Confidence 346788888888864 3457999999999999999999999999999999999999999999999776544 68899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
+++++|||+..+++||+||++++...|.||+||++|.|+.- .+|.|+..+
T Consensus 393 ~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 393 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred cccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc--eEEEEecHH
Confidence 99999999999999999999999999999999999999754 344455443
No 32
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.48 E-value=1.2e-13 Score=161.02 Aligned_cols=180 Identities=18% Similarity=0.220 Sum_probs=135.7
Q ss_pred HHHHHHhccCCCchhhHHHHHH-----HHH-HHhcCCcccccccccc-cccCCccccccccccccHHHHHHHHHHHhhcC
Q 000096 3 RVEENLGSIGNSKGRSVHNSVM-----ELR-NICNHPYLSQLHAEEV-DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 75 (2260)
Q Consensus 3 RVEKiLgSiGnsKgRSLfNiLM-----QLR-KICNHPYLfqlSeEEV-d~LlPe~~l~~LIRsSGKLELLdrLLkKLken 75 (2260)
.|..+|..+...++.-||.+.| +|. -+...|.-+..+.... -....+. +..+..--|-.+|..||.++ .
T Consensus 224 ~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~--ylfv~~k~K~~yLV~ll~e~--~ 299 (476)
T KOG0330|consen 224 ELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQT--YLFVPGKDKDTYLVYLLNEL--A 299 (476)
T ss_pred HHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhh--eEeccccccchhHHHHHHhh--c
Confidence 4567777777777766776666 222 2223343332211100 0000111 12233345677888999866 5
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeC
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 155 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFD 155 (2260)
|..+||||+...+.+.|.-+|+..|+.+..|||.+++..|...+++|+++... +|++|+++++||+++.+|+|||||
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecchhcccCCCCCceEEEecC
Confidence 68999999999999999999999999999999999999999999999765544 899999999999999999999999
Q ss_pred CCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHH
Q 000096 156 TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191 (2260)
Q Consensus 156 pPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVE 191 (2260)
.|-+-..|+||.||+.|.| +.-.+..||+.--||
T Consensus 377 iP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred CCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 9999999999999999999 666778888874444
No 33
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.47 E-value=6.4e-14 Score=127.23 Aligned_cols=78 Identities=31% Similarity=0.546 Sum_probs=73.7
Q ss_pred HHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhccccccc
Q 000096 94 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 173 (2260)
Q Consensus 94 D~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRI 173 (2260)
.+|+..++.+..+||.++..+|..+++.|+..... +|++|+++++|+||+.+++||+|+++||+..|.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36889999999999999999999999999887764 788899999999999999999999999999999999999999
Q ss_pred C
Q 000096 174 G 174 (2260)
Q Consensus 174 G 174 (2260)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.47 E-value=2.3e-13 Score=158.38 Aligned_cols=123 Identities=16% Similarity=0.220 Sum_probs=108.5
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.+|..+|... ...++||||+....++.|..+|...|+.+..+||.++..+|..+++.|+.+... +|++|+
T Consensus 239 ~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~---vLVaTd 313 (423)
T PRK04837 239 NEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD---ILVATD 313 (423)
T ss_pred HHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc---EEEEec
Confidence 346888888888643 468999999999999999999999999999999999999999999999776655 789999
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
++++|||+..+++||+||+|+++..|.||+||++|.|++-. ++.|++.
T Consensus 314 v~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 314 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred hhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 99999999999999999999999999999999999997654 4445543
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.46 E-value=4.7e-13 Score=163.19 Aligned_cols=122 Identities=19% Similarity=0.347 Sum_probs=107.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.+|..+|.. ..+.++||||+....++.|.++|...++.+..|||.++..+|.++++.|+.+... +|++|+
T Consensus 241 ~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~---VLVaTd 315 (572)
T PRK04537 241 DEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE---ILVATD 315 (572)
T ss_pred HHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEeh
Confidence 34578888877763 3578999999999999999999999999999999999999999999999765544 788999
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEe
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLIT 186 (2260)
++++|||+..+++||+||.+|++..|.||+||++|.|.+..+ +.|++
T Consensus 316 v~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~ 362 (572)
T PRK04537 316 VAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFAC 362 (572)
T ss_pred hhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEec
Confidence 999999999999999999999999999999999999976544 44443
No 36
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.45 E-value=2.4e-13 Score=160.44 Aligned_cols=119 Identities=18% Similarity=0.282 Sum_probs=103.9
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|..+|..++.. ....++||||+....++.|.+.|...++.+..+||.++..+|.++++.|+.+... +|++|
T Consensus 228 ~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iLVaT 302 (456)
T PRK10590 228 DKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR---VLVAT 302 (456)
T ss_pred CHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEc
Confidence 334566667766653 2457999999999999999999999999999999999999999999999775544 78899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEE
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVr 180 (2260)
+++++|||+..+++||+||+++++..|.||+||++|.|.+..+.
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai 346 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEAL 346 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEE
Confidence 99999999999999999999999999999999999999765443
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.42 E-value=5.1e-12 Score=156.02 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=106.4
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|+..|.++|... ...++||||.....++.|..+|...|+.+..+||.+++.+|.+++++|+.+... +|++|
T Consensus 228 ~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~---ILVAT 302 (629)
T PRK11634 228 WGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD---ILIAT 302 (629)
T ss_pred chhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---EEEEc
Confidence 3446888898888643 457899999999999999999999999999999999999999999999776554 78999
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEE
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVr 180 (2260)
+++++|||+..+++||+||+++++..|.||+||++|.|.+....
T Consensus 303 dv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred chHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE
Confidence 99999999999999999999999999999999999999765433
No 38
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.41 E-value=2.2e-12 Score=155.25 Aligned_cols=126 Identities=21% Similarity=0.278 Sum_probs=109.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk-rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
....|...|..+|........++|||++....++.|..+|.. .++++..+||+++..+|..++++|+.+... +|++
T Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~---ILVa 424 (518)
T PLN00206 348 ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP---VIVA 424 (518)
T ss_pred cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEE
Confidence 345577888888876555557899999999999999999974 699999999999999999999999876655 7899
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
|+++++|||+..+++||+||+|.+...|.||+||++|.|.. -.+|.|++.
T Consensus 425 Tdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~ 474 (518)
T PLN00206 425 TGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNE 474 (518)
T ss_pred ecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEch
Confidence 99999999999999999999999999999999999999965 445556654
No 39
>PTZ00424 helicase 45; Provisional
Probab=99.40 E-value=2.9e-12 Score=146.38 Aligned_cols=121 Identities=20% Similarity=0.350 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccc
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGG 140 (2260)
|+..|..++..+ ...++||||.....++.|..+|...++.+..+||+++..+|..+++.|+.+... +|++|++++
T Consensus 254 ~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---vLvaT~~l~ 328 (401)
T PTZ00424 254 KFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---VLITTDLLA 328 (401)
T ss_pred HHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEEccccc
Confidence 556666666533 457899999999999999999999999999999999999999999999776544 688999999
Q ss_pred cccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 141 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 141 eGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
+|||+..+++||+||++++...|.||+||++|.|.+ -.+|.|++.+
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 999999999999999999999999999999999854 4566677654
No 40
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.38 E-value=1.2e-12 Score=115.96 Aligned_cols=81 Identities=30% Similarity=0.490 Sum_probs=75.0
Q ss_pred HHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccc
Q 000096 91 VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 170 (2260)
Q Consensus 91 ILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRA 170 (2260)
.|.++|+..++.+..++|.++..+|..+++.|+.... .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999987654 5788999999999999999999999999999999999999
Q ss_pred cccC
Q 000096 171 HRIG 174 (2260)
Q Consensus 171 HRIG 174 (2260)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 41
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.35 E-value=1.2e-12 Score=150.10 Aligned_cols=174 Identities=19% Similarity=0.214 Sum_probs=142.6
Q ss_pred HHHHHhccCCCchhhHHHHH------HHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCC
Q 000096 4 VEENLGSIGNSKGRSVHNSV------MELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDH 77 (2260)
Q Consensus 4 VEKiLgSiGnsKgRSLfNiL------MQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGh 77 (2260)
+++.|.-+.+.++..|+.+. ..+++....||.+.+..+- .. ..-..++..+..+.|+..|.-|+.+| .-.
T Consensus 248 ~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL-tl-~GvtQyYafV~e~qKvhCLntLfskL--qIN 323 (459)
T KOG0326|consen 248 VEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL-TL-KGVTQYYAFVEERQKVHCLNTLFSKL--QIN 323 (459)
T ss_pred HHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh-hh-cchhhheeeechhhhhhhHHHHHHHh--ccc
Confidence 56677777777776555443 2678899999998766442 11 12223457788899999999999987 346
Q ss_pred eEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCC
Q 000096 78 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 157 (2260)
Q Consensus 78 KVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpP 157 (2260)
+.||||+++..+++|...+...||.++++|..|.++.|.+++..|+++. |+ .|++++..-+||++|+.|+||+||.+
T Consensus 324 QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~--cr-nLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK--CR-NLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc--cc-eeeehhhhhcccccceeeEEEecCCC
Confidence 8999999999999999999999999999999999999999999997654 44 58889999999999999999999999
Q ss_pred CChhhhhhhcccccccCCcCcEEEEEEEe
Q 000096 158 WNPQVDLQAQARAHRIGQKRDVLVLRFET 186 (2260)
Q Consensus 158 WNParDLQAIGRAHRIGQKKEVrVYRLIT 186 (2260)
-|+..|+||+||.+|+|- --.-.+||+
T Consensus 401 k~aEtYLHRIGRsGRFGh--lGlAInLit 427 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGH--LGLAINLIT 427 (459)
T ss_pred CCHHHHHHHccCCccCCC--cceEEEEEe
Confidence 999999999999999994 334456664
No 42
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.34 E-value=7.7e-13 Score=168.08 Aligned_cols=139 Identities=29% Similarity=0.330 Sum_probs=121.0
Q ss_pred cccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 58 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 58 sSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
...|+..+..++..++ ....|+|+|+|+...+|.++..+..++|.+.+..+ + ++-...+..|.. +.|||+.
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t--~d~~dc~~~fk~----I~clll~ 1273 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-T--EDFDDCIICFKS----IDCLLLF 1273 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-C--cchhhhhhhccc----ceEEEEE
Confidence 4578888866665554 34589999999999999999999999998866554 3 356677888832 8899999
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLG 203 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLd 203 (2260)
...++-||||..|.|||+.+|-.||..+.||+||+|||||++++.||||+..+|||+.|+.....|..
T Consensus 1274 ~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee 1341 (1394)
T KOG0298|consen 1274 VSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEE 1341 (1394)
T ss_pred eccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877743
No 43
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=8.4e-12 Score=145.29 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=118.8
Q ss_pred HHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEe
Q 000096 28 NICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLD 107 (2260)
Q Consensus 28 KICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLD 107 (2260)
++.-+|-.+.+..+++......+++-..-....|+++|.+|..-+ .-...||||+.+.+..+|...|...|+.+..+|
T Consensus 284 kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~ 361 (477)
T KOG0332|consen 284 KIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLH 361 (477)
T ss_pred HhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEee
Confidence 344444333333333322222333333334457999999966533 345789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCC------ChhhhhhhcccccccCCcCcEEE
Q 000096 108 GHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW------NPQVDLQAQARAHRIGQKRDVLV 181 (2260)
Q Consensus 108 GSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPW------NParDLQAIGRAHRIGQKKEVrV 181 (2260)
|.+...+|..++++|+.+... +|++|.++++||+.+..+.||+||+|- ++..|+|||||++|+|.+. ..
T Consensus 362 G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG--~a 436 (477)
T KOG0332|consen 362 GDLTVEQRAAIIDRFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG--LA 436 (477)
T ss_pred ccchhHHHHHHHHHHhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc--eE
Confidence 999999999999999887776 799999999999999999999999986 6789999999999999543 44
Q ss_pred EEEEeCC
Q 000096 182 LRFETVQ 188 (2260)
Q Consensus 182 YRLITeg 188 (2260)
++|+-.+
T Consensus 437 ~n~v~~~ 443 (477)
T KOG0332|consen 437 INLVDDK 443 (477)
T ss_pred EEeeccc
Confidence 5566443
No 44
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=8.8e-12 Score=148.08 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccc
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGG 140 (2260)
++..|.++|.+ ...+.+.||||.....++.|..+|+..|+.+..+||+++..+|.++++.|..+... +|++|.+.+
T Consensus 212 ~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~---vLVaT~~~~ 287 (470)
T TIGR00614 212 ILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ---VVVATVAFG 287 (470)
T ss_pred HHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc---EEEEechhh
Confidence 34444444442 23567789999999999999999999999999999999999999999999766544 688999999
Q ss_pred cccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 141 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 141 eGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
+|||+.++++||+|++|++...|.|++||++|.|+...+.+|
T Consensus 288 ~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 288 MGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred ccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999999999999999999987765544
No 45
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.32 E-value=3.4e-12 Score=152.02 Aligned_cols=172 Identities=13% Similarity=0.228 Sum_probs=133.7
Q ss_pred hHHHHHHhccCCCchhhHHHHHH--HHHHHhcC-----CcccccccccccccC-CccccccccccccHHHHHHHHHHHhh
Q 000096 2 KRVEENLGSIGNSKGRSVHNSVM--ELRNICNH-----PYLSQLHAEEVDTLI-PKHYLPPIVRLCGKLEMLDRLLPKLK 73 (2260)
Q Consensus 2 KRVEKiLgSiGnsKgRSLfNiLM--QLRKICNH-----PYLfqlSeEEVd~Ll-Pe~~l~~LIRsSGKLELLdrLLkKLk 73 (2260)
+.|+++++-+...++..||.+.+ +.+++|+- |.++........... .-...+.+.....+|-+|..+|++..
T Consensus 249 ~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~ 328 (543)
T KOG0342|consen 249 EDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNI 328 (543)
T ss_pred HHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhc
Confidence 46788888888888888888766 45555432 222222211111100 00111233344556888889998765
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII 153 (2260)
.. .|||||+....+..++.+.|++..+++..|||..++..|..+..+|.+..+. +|++|+++++|+|+.+.+.||-
T Consensus 329 ~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ 404 (543)
T KOG0342|consen 329 KR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQ 404 (543)
T ss_pred CC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEEecchhhccCCCCCceEEEE
Confidence 43 8999999999999999999999999999999999999999999999887776 8999999999999999999999
Q ss_pred eCCCCChhhhhhhcccccccCCcC
Q 000096 154 FDTDWNPQVDLQAQARAHRIGQKR 177 (2260)
Q Consensus 154 FDpPWNParDLQAIGRAHRIGQKK 177 (2260)
||+|-||..|+||+||.+|-|-+.
T Consensus 405 ~~~P~d~~~YIHRvGRTaR~gk~G 428 (543)
T KOG0342|consen 405 YDPPSDPEQYIHRVGRTAREGKEG 428 (543)
T ss_pred eCCCCCHHHHHHHhccccccCCCc
Confidence 999999999999999999977543
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.28 E-value=2.8e-11 Score=147.25 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=105.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|...|..+|... .+.+.||||.....++.|..+|...|+.+..+||+++..+|..+++.|..+... +|++|
T Consensus 207 ~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~---vlVaT 281 (591)
T TIGR01389 207 KKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK---VMVAT 281 (591)
T ss_pred eCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEe
Confidence 3456777777777643 378999999999999999999999999999999999999999999999776544 78899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEE
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVr 180 (2260)
.+.|.|||+.++++||+||+++|...|.|++||++|.|+...+.
T Consensus 282 ~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 282 NAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred chhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 99999999999999999999999999999999999999766543
No 47
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.27 E-value=5.3e-11 Score=142.96 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=115.6
Q ss_pred ccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLL 134 (2260)
+.....|..++.+++..+...++++|||+..+..++.|.+.|+..++++..++|+++..+|..+++.|+.+ ...|+|.
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~--~~~vLva 400 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG--KGIIIVA 400 (501)
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC--CCeEEEE
Confidence 34455677788888887777889999999999999999999999999999999999999999999999653 3456666
Q ss_pred cccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcC-cEEEEEEEeCCC
Q 000096 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR-DVLVLRFETVQT 189 (2260)
Q Consensus 135 STRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKK-EVrVYRLITegT 189 (2260)
+++..++|+|+...++||++.+..+...++|++||++|.+..| .+.||.|+..-.
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 6699999999999999999999999999999999999998755 599999996433
No 48
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.27 E-value=3.3e-11 Score=147.90 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccc
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 139 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAG 139 (2260)
.++..|..+|.. ..+.++||||+.+..++.|...|+..|+.+..+||+++..+|.++++.|..+... +|++|.+.
T Consensus 222 ~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~---VLVaT~a~ 296 (607)
T PRK11057 222 KPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ---IVVATVAF 296 (607)
T ss_pred chHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC---EEEEechh
Confidence 345555555542 3578999999999999999999999999999999999999999999999776544 68899999
Q ss_pred ccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcE
Q 000096 140 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179 (2260)
Q Consensus 140 GeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEV 179 (2260)
++|||+.++++||+||+|++...|.|++||++|.|....+
T Consensus 297 ~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred hccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceE
Confidence 9999999999999999999999999999999999976553
No 49
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.25 E-value=1.4e-11 Score=143.53 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=134.0
Q ss_pred HHHHHHhccCCCchhhHHHHHHH-HHHHhcCCcccccccccccccCCc--c--ccccccccccHHHHHHHHHHHhhcCCC
Q 000096 3 RVEENLGSIGNSKGRSVHNSVME-LRNICNHPYLSQLHAEEVDTLIPK--H--YLPPIVRLCGKLEMLDRLLPKLKATDH 77 (2260)
Q Consensus 3 RVEKiLgSiGnsKgRSLfNiLMQ-LRKICNHPYLfqlSeEEVd~LlPe--~--~l~~LIRsSGKLELLdrLLkKLkenGh 77 (2260)
.++.++.-.+.-++..||.+.|- --|+...-.|+....-++...... . ..-.+++.-+|+-+|.+.|++ ..-
T Consensus 346 dir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK---T~P 422 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK---TSP 422 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc---CCC
Confidence 35566666666666666666662 112222223332221111111000 0 011346677899888888864 567
Q ss_pred eEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCC
Q 000096 78 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 157 (2260)
Q Consensus 78 KVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpP 157 (2260)
+||||+.....+|.|.+||-.+|+..+.|||+..+++|...|+.|+.+... +|+.|++++-||++++..|||+||.|
T Consensus 423 pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 423 PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCCh
Confidence 999999999999999999999999999999999999999999999887776 79999999999999999999999999
Q ss_pred CChhhhhhhcccccccCCcCcEEEEEEEeCCCHHH
Q 000096 158 WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 192 (2260)
Q Consensus 158 WNParDLQAIGRAHRIGQKKEVrVYRLITegTVEE 192 (2260)
-.-..|.|||||.+|-|.+. .-..||.+++-+-
T Consensus 500 ~eIENYVHRIGRTGRsg~~G--iATTfINK~~~es 532 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTG--IATTFINKNQEES 532 (610)
T ss_pred HHHHHHHHHhcccCCCCCcc--eeeeeecccchHH
Confidence 99999999999999999654 3344555555443
No 50
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=5.6e-11 Score=142.06 Aligned_cols=188 Identities=14% Similarity=0.198 Sum_probs=140.0
Q ss_pred hHHHHHHhccCCCchhhHHHHHHH-----HH-HHhcCCccccccccc-ccccCCccccccc-cccccHHHHHHHHHHHhh
Q 000096 2 KRVEENLGSIGNSKGRSVHNSVME-----LR-NICNHPYLSQLHAEE-VDTLIPKHYLPPI-VRLCGKLEMLDRLLPKLK 73 (2260)
Q Consensus 2 KRVEKiLgSiGnsKgRSLfNiLMQ-----LR-KICNHPYLfqlSeEE-Vd~LlPe~~l~~L-IRsSGKLELLdrLLkKLk 73 (2260)
+.|.+++..+...++..||.+.|. |- --.|.|.-+...... ....+.+.|...- -+.--+-.+|..|+.++.
T Consensus 346 demnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf 425 (691)
T KOG0338|consen 346 DEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTF 425 (691)
T ss_pred HHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhc
Confidence 467889999999999999999883 33 334667544322111 1111112221100 112224456666776553
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII 153 (2260)
..++|||.+....++.|.-.|...|+++..|||++++.+|.+.+++|++..-. +|++|+++++||++.+..+|||
T Consensus 426 --~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid---vLiaTDvAsRGLDI~gV~tVIN 500 (691)
T KOG0338|consen 426 --QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID---VLIATDVASRGLDIEGVQTVIN 500 (691)
T ss_pred --ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC---EEEEechhhccCCccceeEEEe
Confidence 57899999999999999999999999999999999999999999999776655 7999999999999999999999
Q ss_pred eCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000096 154 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 198 (2260)
Q Consensus 154 FDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERA 198 (2260)
|+.|-....|+||+||..|.|. .-+-..|+..+ |.+|+.-+
T Consensus 501 y~mP~t~e~Y~HRVGRTARAGR--aGrsVtlvgE~--dRkllK~i 541 (691)
T KOG0338|consen 501 YAMPKTIEHYLHRVGRTARAGR--AGRSVTLVGES--DRKLLKEI 541 (691)
T ss_pred ccCchhHHHHHHHhhhhhhccc--CcceEEEeccc--cHHHHHHH
Confidence 9999999999999999999995 34445566655 55555433
No 51
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=4.6e-11 Score=142.01 Aligned_cols=176 Identities=15% Similarity=0.244 Sum_probs=142.2
Q ss_pred hHHHHHHhccCCCchhhHHHHHHH------HHHHhcCCcccccccccccccCC-ccccccccccccHHHHHHHHHHHhhc
Q 000096 2 KRVEENLGSIGNSKGRSVHNSVME------LRNICNHPYLSQLHAEEVDTLIP-KHYLPPIVRLCGKLEMLDRLLPKLKA 74 (2260)
Q Consensus 2 KRVEKiLgSiGnsKgRSLfNiLMQ------LRKICNHPYLfqlSeEEVd~LlP-e~~l~~LIRsSGKLELLdrLLkKLke 74 (2260)
++++.+|..+.+-+..+||.+.|. .|.-..+|..+............ -..++..++..-|+..|.++|.. .
T Consensus 176 ~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~--~ 253 (567)
T KOG0345|consen 176 ASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNN--N 253 (567)
T ss_pred HHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhc--c
Confidence 578999999999888899998883 34445667665443332211111 22345667778899999999985 4
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhh--cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeE
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 152 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~Lrk--rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVI 152 (2260)
..+|+|||......++|....|.. ..+.++.|||.++...|.+++..|.+.... +|++|+++++||++.+.|+||
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~Vv 330 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVV 330 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEE
Confidence 678999999999999999888864 477899999999999999999999774444 799999999999999999999
Q ss_pred eeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 153 IFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 153 IFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
.||+|-+|..+.||.||+.|.|....-.||
T Consensus 331 Q~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 331 QFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred ecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 999999999999999999999987665444
No 52
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.22 E-value=7.2e-11 Score=139.55 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=120.1
Q ss_pred HHHHHHHhcC-CcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCc
Q 000096 23 VMELRNICNH-PYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY 101 (2260)
Q Consensus 23 LMQLRKICNH-PYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGI 101 (2260)
+..|+++|.| |.+....+.+......-..+...+..--|+.+|..||+ |.--..|.|||.+..+.+-.|.-+|+..||
T Consensus 215 v~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGi 293 (569)
T KOG0346|consen 215 VQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGI 293 (569)
T ss_pred HHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCc
Confidence 4468776555 88877666554422111122233345569988888886 333356999999999999999999999999
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc--------------------------c---------cccccCCC
Q 000096 102 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR--------------------------A---------GGVGVNLQ 146 (2260)
Q Consensus 102 kyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR--------------------------A---------GGeGLNLQ 146 (2260)
+.+.+.|.++...|.-+|++||++- |. +||.|+ . ..+||+++
T Consensus 294 ksciLNseLP~NSR~Hii~QFNkG~--Yd-ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~ 370 (569)
T KOG0346|consen 294 KSCILNSELPANSRCHIIEQFNKGL--YD-IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFH 370 (569)
T ss_pred HhhhhcccccccchhhHHHHhhCcc--ee-EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccch
Confidence 9999999999999999999998753 34 455555 1 24899999
Q ss_pred ccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 147 AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 147 aADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
..++||+||+|-++..|+||+||..|-|.+..+.-|
T Consensus 371 ~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 371 HVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred heeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 999999999999999999999999998866655443
No 53
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.20 E-value=8.3e-11 Score=141.47 Aligned_cols=192 Identities=17% Similarity=0.239 Sum_probs=151.9
Q ss_pred hHHHHHHhccCCCchhhHHHHHH-----H-HHHHhcCCcccccccccccccCCc--cccccccccccHHHHHHHHHHHhh
Q 000096 2 KRVEENLGSIGNSKGRSVHNSVM-----E-LRNICNHPYLSQLHAEEVDTLIPK--HYLPPIVRLCGKLEMLDRLLPKLK 73 (2260)
Q Consensus 2 KRVEKiLgSiGnsKgRSLfNiLM-----Q-LRKICNHPYLfqlSeEEVd~LlPe--~~l~~LIRsSGKLELLdrLLkKLk 73 (2260)
+.|..++.++...++..||.+.. . +|-+.++|..+..+..... ..|. ..++.++..--|+.+|..+|...
T Consensus 234 ~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~-atP~~L~Q~y~~v~l~~Ki~~L~sFI~sh- 311 (758)
T KOG0343|consen 234 KTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVA-ATPSNLQQSYVIVPLEDKIDMLWSFIKSH- 311 (758)
T ss_pred HHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccc-cChhhhhheEEEEehhhHHHHHHHHHHhc-
Confidence 46788999999999988887654 3 4445577877665533221 1221 22345667778999999999854
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhh--cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCee
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 151 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~Lrk--rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhV 151 (2260)
-..|.|||..+...+.++.+.|.+ .|++.+.|||.+++..|..+..+|.... .++|++|+++++||++...|.|
T Consensus 312 -lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~---~~vLF~TDv~aRGLDFpaVdwV 387 (758)
T KOG0343|consen 312 -LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR---AVVLFCTDVAARGLDFPAVDWV 387 (758)
T ss_pred -cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc---ceEEEeehhhhccCCCcccceE
Confidence 457999999999999999888854 4899999999999999999999996543 4689999999999999999999
Q ss_pred EeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000096 152 IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 202 (2260)
Q Consensus 152 IIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKL 202 (2260)
|-||.|-+-..|+||.||+.|++...+..+|- .-+-||.++.+++.|.
T Consensus 388 iQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 388 IQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLKKLQKKK 435 (758)
T ss_pred EEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHHHHHHcC
Confidence 99999999999999999999999877765542 2455688888877764
No 54
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.20 E-value=5.6e-11 Score=138.09 Aligned_cols=173 Identities=16% Similarity=0.233 Sum_probs=135.7
Q ss_pred HHHHHHhccCCCchhhHHHHHH--HHHHHhcCCcc----ccccc-ccccccCCccccccccccccHHHHHHHHHHHhhc-
Q 000096 3 RVEENLGSIGNSKGRSVHNSVM--ELRNICNHPYL----SQLHA-EEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKA- 74 (2260)
Q Consensus 3 RVEKiLgSiGnsKgRSLfNiLM--QLRKICNHPYL----fqlSe-EEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLke- 74 (2260)
.|+.+..-+...++..||.+.| .++++-.+|-- +.+.. +.+.....-...+-++....|-.+|..+|..+..
T Consensus 173 ~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~ 252 (442)
T KOG0340|consen 173 ILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENK 252 (442)
T ss_pred HHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhc
Confidence 4566666667777777776655 56666666533 32221 1111100011123455667899999999998876
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEee
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 154 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIF 154 (2260)
....++||.|.+..+.+|...|+..+++...+|+.+++.+|...+.+|+.+... +|++|+++++||++...+.||+|
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~ 329 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR---ILIATDVASRGLDIPTVELVVNH 329 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc---EEEEechhhcCCCCCceeEEEec
Confidence 467899999999999999999999999999999999999999999999776555 78999999999999999999999
Q ss_pred CCCCChhhhhhhcccccccCCcCc
Q 000096 155 DTDWNPQVDLQAQARAHRIGQKRD 178 (2260)
Q Consensus 155 DpPWNParDLQAIGRAHRIGQKKE 178 (2260)
|.|-.|..|+||.||..|.|....
T Consensus 330 diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 330 DIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred CCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999997654
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.20 E-value=2.7e-10 Score=129.11 Aligned_cols=123 Identities=15% Similarity=0.258 Sum_probs=99.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCc--eEEEEeCCCCHHHHHHH----HHHhhCCCCCeEEE
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGAL----IDKFNQQDSPFFIF 132 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGI--kyvRLDGSTSqEERQeI----IDrFNk~DSei~VL 132 (2260)
..|+..+.+++..+ ..+.++|||++....++.+..+|+..+. .+..+||.++..+|.+. ++.|.++.. .+
T Consensus 206 ~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~---~i 281 (358)
T TIGR01587 206 VGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK---FV 281 (358)
T ss_pred ccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC---eE
Confidence 35777888887544 4578999999999999999999987765 58999999999999764 889965443 36
Q ss_pred EEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcC----cEEEEEEEeCC
Q 000096 133 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR----DVLVLRFETVQ 188 (2260)
Q Consensus 133 LLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKK----EVrVYRLITeg 188 (2260)
|++|+++++|||+ .+++||+++.+ +..+.||+||++|.|.+. .|+||+....+
T Consensus 282 lvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 282 IVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8899999999999 58999998766 788999999999999764 35666555444
No 56
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.16 E-value=1.6e-10 Score=148.89 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=96.7
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeC
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 155 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFD 155 (2260)
+.+.||||..+..++.|..+|...|+.+..+||+++..+|..++++|..+... +|++|.+.|+|||+.+.++||+||
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcC
Confidence 56899999999999999999999999999999999999999999999776554 688999999999999999999999
Q ss_pred CCCChhhhhhhcccccccCCcCcEEEEE
Q 000096 156 TDWNPQVDLQAQARAHRIGQKRDVLVLR 183 (2260)
Q Consensus 156 pPWNParDLQAIGRAHRIGQKKEVrVYR 183 (2260)
+|.+...|.|++||++|.|+...+..|+
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999999999999876655543
No 57
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.12 E-value=3e-10 Score=142.83 Aligned_cols=124 Identities=21% Similarity=0.156 Sum_probs=102.8
Q ss_pred HHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc--------CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccc
Q 000096 68 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--------QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 139 (2260)
Q Consensus 68 LLkKLkenGhKVLIFSQfTdtLDILED~Lrkr--------GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAG 139 (2260)
+|..+...+.++||||+.+...+.|..+|+.. +.++..+||++.+++|.+++++|.++.-. +|++|+++
T Consensus 263 ~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~l 339 (742)
T TIGR03817 263 LLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL---GVATTNAL 339 (742)
T ss_pred HHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce---EEEECchH
Confidence 33334445789999999999999999988653 56778999999999999999999765443 68999999
Q ss_pred ccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHH
Q 000096 140 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 196 (2260)
Q Consensus 140 GeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyE 196 (2260)
++|||+...++||+||.|-+...|.||+||++|.|+.. .++.++..+..|.+++.
T Consensus 340 erGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 340 ELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVARDDPLDTYLVH 394 (742)
T ss_pred hccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999654 34555555667766443
No 58
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.12 E-value=6e-09 Score=129.71 Aligned_cols=124 Identities=22% Similarity=0.247 Sum_probs=107.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
..+++..|...|..+...+.++||||.....++.|.++|...|+++..+||.++..+|..++..|+.+. +. +|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~--i~-vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FD-VLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC--ce-EEEEeC
Confidence 456788888888888888999999999999999999999999999999999999999999999996543 33 678899
Q ss_pred ccccccCCCccCeeEeeCCC-----CChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 138 AGGVGVNLQAADTVIIFDTD-----WNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpP-----WNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
.+++|+++..+++||++|.+ -++..|.||+||++|- . .-.++.|+..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 99999999999999999974 5888999999999994 3 3345666653
No 59
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.11 E-value=1.8e-09 Score=134.45 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=111.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
..+++..|...|.++...+.++||||.....++.|.++|...|+++..+||.++..+|.+++..|+.+. +. +|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~--i~-VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE--FD-VLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC--ce-EEEEcC
Confidence 456888888888888888999999999999999999999999999999999999999999999996644 33 678899
Q ss_pred ccccccCCCccCeeEeeC-----CCCChhhhhhhcccccccCCcCcEEEEEEEeCCC--HHHHHHHH
Q 000096 138 AGGVGVNLQAADTVIIFD-----TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT--VEEQVRAS 197 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFD-----pPWNParDLQAIGRAHRIGQKKEVrVYRLITegT--VEEKIyER 197 (2260)
.+++|+++..+++||++| .+-+...|+|++||++|.. . -.++.|+...| +...|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999 4557889999999999973 3 34555555444 44555544
No 60
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.09 E-value=5.2e-10 Score=134.45 Aligned_cols=124 Identities=20% Similarity=0.301 Sum_probs=110.3
Q ss_pred cccccHHHHHHHHHHHhhcC--C-----CeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 56 VRLCGKLEMLDRLLPKLKAT--D-----HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLken--G-----hKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
+....|...|.++|...... . ++++||++....++.|..+|...++++..|||..++.+|.+.++.|+.....
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 34567888888888765422 2 5999999999999999999999999999999999999999999999777666
Q ss_pred eEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 129 i~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
+|++|.++++|||+....|||+||+|-+-..|.|||||++|.|+.-..+.|
T Consensus 390 ---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 390 ---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred ---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 789999999999999999999999999999999999999999987665544
No 61
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.08 E-value=2.2e-10 Score=139.27 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=134.5
Q ss_pred HHHHHhccCCCchhhH------HHHHHHHHHHhcCCcccccccccccccCCccccccccc-------cccHHHHHHHHHH
Q 000096 4 VEENLGSIGNSKGRSV------HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVR-------LCGKLEMLDRLLP 70 (2260)
Q Consensus 4 VEKiLgSiGnsKgRSL------fNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIR-------sSGKLELLdrLLk 70 (2260)
|..++.++...++... .|+-..|-|++.+|.|+.........+...+|...+.. .--|++.|.+++.
T Consensus 189 In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~ 268 (980)
T KOG4284|consen 189 INIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFK 268 (980)
T ss_pred HHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHh
Confidence 4455566555554322 34455788999999999877766555545555433221 1228888888887
Q ss_pred HhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCe
Q 000096 71 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 150 (2260)
Q Consensus 71 KLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADh 150 (2260)
.+ .-.+.||||.....++-|..+|...|+.+..|.|.|++.+|..++++++. -.++ +|++|+..++||+-..+|.
T Consensus 269 ~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~--f~~r-ILVsTDLtaRGIDa~~vNL 343 (980)
T KOG4284|consen 269 SI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA--FRVR-ILVSTDLTARGIDADNVNL 343 (980)
T ss_pred hC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh--ceEE-EEEecchhhccCCccccce
Confidence 76 34689999999999999999999999999999999999999999999844 2344 6889999999999999999
Q ss_pred eEeeCCCCChhhhhhhcccccccCCcC
Q 000096 151 VIIFDTDWNPQVDLQAQARAHRIGQKR 177 (2260)
Q Consensus 151 VIIFDpPWNParDLQAIGRAHRIGQKK 177 (2260)
||++|.+-|...|.|||||++|+|.+.
T Consensus 344 VVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 344 VVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred EEecCCCcchHHHHHHhhhcccccccc
Confidence 999999999999999999999999754
No 62
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5e-10 Score=131.21 Aligned_cols=122 Identities=21% Similarity=0.325 Sum_probs=109.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
-.|+..|.++.+ +-...+||++...-++.|...|..+++....+||.+.+.+|..++..|+.+.+. +|++|+.
T Consensus 250 ~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl 322 (397)
T KOG0327|consen 250 EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDL 322 (397)
T ss_pred cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeeccc
Confidence 349999999887 446899999999999999999999999999999999999999999999887776 7999999
Q ss_pred cccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 139 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 139 GGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
.++||+++.++.||+||.|-|...|.+|+||.+|+|.+ -...++++..+
T Consensus 323 ~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d 371 (397)
T KOG0327|consen 323 LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEED 371 (397)
T ss_pred cccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhh
Confidence 99999999999999999999999999999999999954 44556666553
No 63
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.06 E-value=2.9e-09 Score=136.00 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh------cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF------KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk------rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
..+.++|.++...++++||||+.+..++.+...|.. .+..+..+||+++.++|..+++.|+++... +|++|
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaT 347 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSS 347 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 344555555556678999999999999999998865 246788999999999999999999765543 68899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhccccccc-CCcCcEEEEE
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-GQKRDVLVLR 183 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRI-GQKKEVrVYR 183 (2260)
.++++|||+...++||+|+.|.+...|.||+||++|. |+.....+|-
T Consensus 348 s~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 348 TSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred ChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999999999999999986 4445555554
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=1.3e-09 Score=135.68 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=107.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|+.+|.+++..+...++.+||||++....+.|...|...|+++..|||... +|...+..|...... ++++|
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVAT 528 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVAT 528 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEc
Confidence 3456999999999887777889999999999999999999999999999999865 566666666433333 78999
Q ss_pred cccccccCCC---ccC-----eeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000096 137 RAGGVGVNLQ---AAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 137 RAGGeGLNLQ---aAD-----hVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyER 197 (2260)
+.+|+|+|+. ... |||+||.|-|...|.||+||++|.|..-.+. .|+ +.|+.++.+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 9999999998 443 9999999999999999999999999765443 333 446666654
No 65
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.04 E-value=5.9e-10 Score=130.95 Aligned_cols=120 Identities=17% Similarity=0.307 Sum_probs=107.0
Q ss_pred ccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLL 134 (2260)
+...+.|+..+..++..+ ....|+|||+....+.|.|..-|...||..-.|||.-.+.+|+..++.|+.+. ++ +|+
T Consensus 445 v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~--vr-ILv 520 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE--VR-ILV 520 (629)
T ss_pred ecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc--eE-EEE
Confidence 345678998888887764 45789999999999999999999999999999999999999999999996544 33 688
Q ss_pred cccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCc
Q 000096 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178 (2260)
Q Consensus 135 STRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKE 178 (2260)
+|+.+++||++....||++||.|-|-..|.||+||++|.|.+..
T Consensus 521 aTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 521 ATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred EechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 99999999999999999999999999999999999999997654
No 66
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=8.7e-10 Score=131.97 Aligned_cols=126 Identities=21% Similarity=0.342 Sum_probs=112.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
.-.||.+|.+.|.++.. ..+||||..-....+.|...|+.++|.+..+||.+.+.+|.+.|.+|.+.... +|+.|+
T Consensus 451 ~~~Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---VlvatD 526 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---VLVATD 526 (731)
T ss_pred cHHHHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---eEEEee
Confidence 45699999998887654 45899999999999999999999999999999999999999999999776665 788899
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
++.+||++....+||+||.--.-..+.|||||.+|.|-+ -..|.|||..-
T Consensus 527 vaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKD 576 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKD 576 (731)
T ss_pred HhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhh
Confidence 999999999999999999999999999999999999976 56788887653
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=1.9e-09 Score=136.28 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=110.1
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|+.+|.+++......++++||||.+....+.|...|...|+++..|+|.+...+|..+...|+. .. ++++|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEc
Confidence 44679999999998877789999999999999999999999999999999999888887777666633 22 78999
Q ss_pred cccccccCC---CccC-----eeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000096 137 RAGGVGVNL---QAAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 137 RAGGeGLNL---QaAD-----hVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyER 197 (2260)
+.+|+|+|+ .... |||+||.|-|+..|.||.||++|.|..-....| + +.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--I---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE--E---cchHHHHHh
Confidence 999999999 4677 999999999999999999999999987654333 3 446666644
No 68
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.00 E-value=1.7e-09 Score=130.23 Aligned_cols=124 Identities=19% Similarity=0.364 Sum_probs=99.0
Q ss_pred ccccccHHHH--HHHHHHHhhc--CCCeEEEEEcchhHHHHHHHHHh----------------------hcCceEEEEeC
Q 000096 55 IVRLCGKLEM--LDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLT----------------------FKQYRYLRLDG 108 (2260)
Q Consensus 55 LIRsSGKLEL--LdrLLkKLke--nGhKVLIFSQfTdtLDILED~Lr----------------------krGIkyvRLDG 108 (2260)
++..-+|+.+ |..+|....+ ...|+|||....++++.-.+.|. ..+.++++|||
T Consensus 400 y~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHG 479 (708)
T KOG0348|consen 400 YTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHG 479 (708)
T ss_pred eEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecC
Confidence 3344556654 5556654432 34689999999988876666653 12467999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEE
Q 000096 109 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 181 (2260)
Q Consensus 109 STSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrV 181 (2260)
+|.+++|..++..|.... ..+|+||+++++||+|.....||-||+|+.+..|+||+||..|+|-+..-..
T Consensus 480 sm~QeeRts~f~~Fs~~~---~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 480 SMEQEERTSVFQEFSHSR---RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred chhHHHHHHHHHhhcccc---ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE
Confidence 999999999999995543 3489999999999999999999999999999999999999999998776443
No 69
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.99 E-value=2.2e-09 Score=123.34 Aligned_cols=179 Identities=20% Similarity=0.247 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHh-----hcCCCeEEEEEcchhHHHH
Q 000096 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL-----KATDHRVLFFSTMTRLLDV 91 (2260)
Q Consensus 17 RSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKL-----kenGhKVLIFSQfTdtLDI 91 (2260)
..+.-++.+|+.+|+||+|...+. ....+........+...|+||.+|.+||..+ ...+.++||.++...++|+
T Consensus 54 ~~~~~~~~nl~~V~~HP~LlvdH~-mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldl 132 (297)
T PF11496_consen 54 QSMELLIENLRLVANHPSLLVDHY-MPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDL 132 (297)
T ss_dssp HHHHHHHHHHHHHHH-GGGT--TT---S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHH
T ss_pred HHHHHHHHHHHHhccCcccccccc-CccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHH
Confidence 345566779999999999964221 1112222233456778999999999999999 6667899999999999999
Q ss_pred HHHHHhhcCceEEEEeCCCCHHHHHHHH------------HHh-hCCCCCeEEEEEccccccc----ccCCCccCeeEee
Q 000096 92 MEDYLTFKQYRYLRLDGHTSGGDRGALI------------DKF-NQQDSPFFIFLLSIRAGGV----GVNLQAADTVIIF 154 (2260)
Q Consensus 92 LED~LrkrGIkyvRLDGSTSqEERQeII------------DrF-Nk~DSei~VLLLSTRAGGe----GLNLQaADhVIIF 154 (2260)
|+.+|..+++.|-|++|..-..+....- ... .+....+.|+|++++-... .++-...|.||-|
T Consensus 133 lE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsf 212 (297)
T PF11496_consen 133 LEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISF 212 (297)
T ss_dssp HHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-
T ss_pred HHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEe
Confidence 9999999999999999986544433322 011 1233467888888775544 2344468999999
Q ss_pred CCCCChhhh-hhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000096 155 DTDWNPQVD-LQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 198 (2260)
Q Consensus 155 DpPWNParD-LQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERA 198 (2260)
|+.||+... .|.+.+.+|-+ +.+-|+|||..+|+|..++..-
T Consensus 213 D~~~d~~~p~i~~lR~~~~~~--~~~PiirLv~~nSiEHi~L~~~ 255 (297)
T PF11496_consen 213 DPSFDTSLPSIEQLRTQNRRN--RLCPIIRLVPSNSIEHIELCFP 255 (297)
T ss_dssp SST--TTSHHHHHHH---------S--EEEEEETTSHHHHHHHHT
T ss_pred cCCCCCCChHHHHHHhhcCCC--CCCcEEEEeeCCCHHHHHHHcc
Confidence 999998754 45555555554 8899999999999998877653
No 70
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.90 E-value=9e-09 Score=130.80 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=92.3
Q ss_pred HHHHHHHHHHH-hhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHH-----HHHHHhhC----CC----
Q 000096 61 KLEMLDRLLPK-LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG-----ALIDKFNQ----QD---- 126 (2260)
Q Consensus 61 KLELLdrLLkK-LkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQ-----eIIDrFNk----~D---- 126 (2260)
|+..+...|.. +...+.++||||+.+..++.|.+.|+..++ ..|||.+++.+|. +++++|.. ..
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 55444443332 334578999999999999999999998887 8999999999999 78999965 21
Q ss_pred CCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 127 Sei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
..-..+|++|+++++|||+.. ++||+++.++ ..|+||+||++|.|......|+
T Consensus 334 ~~g~~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 334 QQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred cccceEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEE
Confidence 011357899999999999985 9999988775 6899999999999986544333
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.89 E-value=1.1e-08 Score=128.44 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=106.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
..|+.++.+.+.++...|+.|||||.+....+.|..+|...|+++..|+|. ..+|...|..|...... ++++|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 468989988888888899999999999999999999999999999999998 77999999999544433 7889999
Q ss_pred cccccCCCc-------cCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 139 GGVGVNLQA-------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 139 GGeGLNLQa-------ADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
+|+|+++.. .-|||+++.+-|...|.|+.||++|.|..-....|
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 999999988 67999999999999999999999999987665544
No 72
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.85 E-value=1.1e-08 Score=124.51 Aligned_cols=123 Identities=19% Similarity=0.241 Sum_probs=107.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH-hhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L-rkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
.-+|+.+|.+++... -.-.+|||.|+.+....|...| .+.+|.+..|||..++.+|.+.+++|+.+.- + +|++|
T Consensus 371 e~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I--w-vLicT 445 (593)
T KOG0344|consen 371 EKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI--W-VLICT 445 (593)
T ss_pred chhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe--e-EEEeh
Confidence 457888888888755 3467999999999999999999 8899999999999999999999999977654 4 58899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
+..++||+|.+++.||+||.+-.-..|++|+||++|.|+.. +.|-|++.
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g--~Aitfytd 494 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSG--KAITFYTD 494 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCc--ceEEEecc
Confidence 99999999999999999999999999999999999999753 44455555
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.84 E-value=1.4e-08 Score=128.06 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=108.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|+.++.+.+.++...++++||||.+....+.|...|...|+++..|+|.+...+|..+...|+.+ -++++|
T Consensus 405 ~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g-----~VlIAT 479 (762)
T TIGR03714 405 TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG-----AVTVAT 479 (762)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC-----eEEEEc
Confidence 345799999999988888899999999999999999999999999999999999988887776666332 278999
Q ss_pred cccccccCCC---------ccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000096 137 RAGGVGVNLQ---------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 137 RAGGeGLNLQ---------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyER 197 (2260)
+.+|+|+++. +.++||+|+++-+... .||.||++|.|.......| + +.|+.++.+
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~--i---s~eD~l~~~ 543 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF--V---SLEDDLIKR 543 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE--E---ccchhhhhh
Confidence 9999999999 8899999999977654 9999999999976654433 3 335555543
No 74
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.83 E-value=1.7e-08 Score=129.94 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=94.9
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCee
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 151 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhV 151 (2260)
..+.+++|||+....++.+.+.|+.. ++++..+||.++..+|.+++.+|..+... +|++|.+.++|||+.++++|
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~---ILVaT~iie~GIDIp~v~~V 734 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ---VLVCTTIIETGIDIPNANTI 734 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcccccccCCEE
Confidence 46789999999999999999999864 78999999999999999999999877655 78999999999999999999
Q ss_pred EeeCCC-CChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 152 IIFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 152 IIFDpP-WNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
|+++.+ +....+.|+.||++|.|++ -++|.|+..
T Consensus 735 Ii~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 735 IIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred EEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 999986 4667889999999998854 555666644
No 75
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=98.82 E-value=2.1e-08 Score=121.40 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=91.1
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeC
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 155 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFD 155 (2260)
..|.||||+..+.+..|.-+|...+|..+.||..|.+.+|.+.+++|.+... .+|++|+++++||+++...|||+|.
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~---~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS---GVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC---eEEEeehhhhccCCCCCcceEEEee
Confidence 4689999999999999999999999999999999999999999999966443 4899999999999999999999999
Q ss_pred CCCChhhhhhhcccccccCC
Q 000096 156 TDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 156 pPWNParDLQAIGRAHRIGQ 175 (2260)
.|-....|.||-||..|.+.
T Consensus 540 VPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred cCCccceeEecccccccccC
Confidence 99999999999999999874
No 76
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.82 E-value=2.9e-08 Score=118.67 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=119.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+..+..++.... ++.++|||+.+......|...|...++ +..++|.++..+|..++++|+.+.. .+|++.+
T Consensus 266 ~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~---~~lv~~~ 340 (442)
T COG1061 266 SERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGI---KVLVTVK 340 (442)
T ss_pred cHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCC---CEEEEee
Confidence 4567777777777655 789999999999999999999988888 8899999999999999999977653 3788999
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccc-cCCcCc--EEEEEEEeCCCHHHHHHHHHHH
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR-IGQKRD--VLVLRFETVQTVEEQVRASAEH 200 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHR-IGQKKE--VrVYRLITegTVEEKIyERArr 200 (2260)
++.+|+|+..++++|+..+.-++..+.|++||+.| ...++. +..|-++...+.+..+......
T Consensus 341 vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 341 VLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred eccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 99999999999999999999999999999999999 555555 7778888888888877665544
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.82 E-value=4e-08 Score=123.05 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=113.0
Q ss_pred ccccHHHHHHHHHHHhhc--CCCeEEEEEcchhHHHHHHHHHh---hcCceEEEEeC--------CCCHHHHHHHHHHhh
Q 000096 57 RLCGKLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLT---FKQYRYLRLDG--------HTSGGDRGALIDKFN 123 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLke--nGhKVLIFSQfTdtLDILED~Lr---krGIkyvRLDG--------STSqEERQeIIDrFN 123 (2260)
...+|++.|.++|..... ...|+|||+.++..++.|..+|. ..+++...+-| ++++.+.+++|++|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 347899999999976553 35899999999999999999997 23455544544 578899999999998
Q ss_pred CCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHH-HHHHH
Q 000096 124 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS-AEHKL 202 (2260)
Q Consensus 124 k~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyER-ArrKL 202 (2260)
++... +|++|.+|-+|||+..||.||.||..-||-...||.|| +| ++.-+|+-|.+ ..+..-+++ ...|.
T Consensus 472 ~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t--~~~~~~~E~~~~~~e 542 (746)
T KOG0354|consen 472 DGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT--GSEVIEFERNNLAKE 542 (746)
T ss_pred CCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc--chhHHHHHHHHHhHH
Confidence 87665 79999999999999999999999999999999999999 55 55666666666 444444433 45566
Q ss_pred HHHHhhhc
Q 000096 203 GVANQSIT 210 (2260)
Q Consensus 203 dLAekVIq 210 (2260)
.++...+.
T Consensus 543 ~lm~~~i~ 550 (746)
T KOG0354|consen 543 KLMNQTIS 550 (746)
T ss_pred HHHHHHHH
Confidence 66655553
No 78
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.81 E-value=1.3e-08 Score=122.43 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lr----krGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
|-..+..+|... +..|+|+|++.......|...|+ ..++++-.+.|..+...|.+.+.+|+.++.. +|+++
T Consensus 416 kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcS 490 (620)
T KOG0350|consen 416 KPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICS 490 (620)
T ss_pred chHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce---EEEeh
Confidence 555666777643 67899999999988777777765 4467777899999999999999999887766 78899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 201 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrK 201 (2260)
++.++|+++.+.+.||+||+|-.-..|.||+||..|.||. -++|.|+... |.+.|..+..|
T Consensus 491 D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~--G~a~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 491 DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQD--GYAITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCC--ceEEEeeccc--cchHHHHHHHH
Confidence 9999999999999999999999999999999999999985 4667777554 44444444443
No 79
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.80 E-value=3.1e-08 Score=126.22 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=112.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+..|..||....+ ..++|||++...-++.|.+.|...||.+..|||+.++.+|...|+.|+... ..||+.|.
T Consensus 596 e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~---~~LLvaTs 671 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV---VNLLVATS 671 (997)
T ss_pred chHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC---ceEEEehh
Confidence 46799999999987655 779999999999999999999999999999999999999999999996544 34899999
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
.+++||++..-..||+||.+--...|.+|.||++|.|.+. ..|.|++.
T Consensus 672 vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 672 VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9999999999999999999988899999999999999877 67777766
No 80
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.80 E-value=2.6e-08 Score=130.51 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=96.4
Q ss_pred HHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccc
Q 000096 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 142 (2260)
Q Consensus 65 LdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeG 142 (2260)
...++.++. .+.+++||++....++.+.+.|... ++++..+||.++..+|.+++.+|.++... +|++|++.++|
T Consensus 799 k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~---VLVaTdIierG 874 (1147)
T PRK10689 799 REAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETG 874 (1147)
T ss_pred HHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC---EEEECchhhcc
Confidence 344455544 4679999999999999999999776 78999999999999999999999876655 78899999999
Q ss_pred cCCCccCeeEeeCCC-CChhhhhhhcccccccCCcCcEEEEEEE
Q 000096 143 VNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFE 185 (2260)
Q Consensus 143 LNLQaADhVIIFDpP-WNParDLQAIGRAHRIGQKKEVrVYRLI 185 (2260)
||+.++++||+++.+ |+...|.|+.||++|.|++. ++|-|.
T Consensus 875 IDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 999999999987765 67788999999999998654 445343
No 81
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.78 E-value=5.6e-08 Score=121.57 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchh--------HHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCCe
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTR--------LLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPF 129 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTd--------tLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSei 129 (2260)
.+...+.+.+.+....+++++|||.... .+..+.+.|... ++++..+||+++..+|.+++++|..+...
T Consensus 455 ~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~- 533 (681)
T PRK10917 455 SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID- 533 (681)
T ss_pred ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC-
Confidence 3444555555555578999999997532 234455555443 57899999999999999999999776554
Q ss_pred EEEEEcccccccccCCCccCeeEeeCCCC-ChhhhhhhcccccccCCcCcEEEEEEEe
Q 000096 130 FIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFET 186 (2260)
Q Consensus 130 ~VLLLSTRAGGeGLNLQaADhVIIFDpPW-NParDLQAIGRAHRIGQKKEVrVYRLIT 186 (2260)
+|++|.+.++|+|+.++++||+||.+. ....+.|+.||++|.|.+ -++|.|+.
T Consensus 534 --ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~--g~~ill~~ 587 (681)
T PRK10917 534 --ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQ--SYCVLLYK 587 (681)
T ss_pred --EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCc--eEEEEEEC
Confidence 788999999999999999999999985 567888999999998865 44555553
No 82
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.76 E-value=7.6e-08 Score=119.30 Aligned_cols=115 Identities=16% Similarity=0.253 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcch--------hHHHHHHHHHhh--cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 63 EMLDRLLPKLKATDHRVLFFSTMT--------RLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQfT--------dtLDILED~Lrk--rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
..+...+.+....+++++|||... ..+..+.+.|.. .++.+..+||+++..+|.+++++|+++... +
T Consensus 435 ~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~---I 511 (630)
T TIGR00643 435 DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD---I 511 (630)
T ss_pred HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---E
Confidence 445555555556789999999764 234445555543 478899999999999999999999776555 7
Q ss_pred EEcccccccccCCCccCeeEeeCCCC-ChhhhhhhcccccccCCcCcEE
Q 000096 133 LLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 133 LLSTRAGGeGLNLQaADhVIIFDpPW-NParDLQAIGRAHRIGQKKEVr 180 (2260)
|++|.+.++|+|+.++++||+||.+. +-..+.|+.||++|.|.+..+.
T Consensus 512 LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 512 LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 88999999999999999999999985 6778899999999998654443
No 83
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=3.4e-08 Score=125.03 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=104.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.+|.+.+......++.|||||.+....+.|...|...|+++..|+|.....++..+...|+. .. ++++|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEec
Confidence 3469999999998888899999999999999999999999999999999999886666666665522 22 788999
Q ss_pred ccccccCCC---ccC-----eeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 138 AGGVGVNLQ---AAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 138 AGGeGLNLQ---aAD-----hVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
.+|+|+++. .+. |||+++.|-|...|.|+.||++|.|..-....|
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 999999995 567 999999999999999999999999988776444
No 84
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.71 E-value=1.4e-07 Score=125.76 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=84.6
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcC---------------------------------ceEEEEeCCCCHHHHHHHHH
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQ---------------------------------YRYLRLDGHTSGGDRGALID 120 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrG---------------------------------IkyvRLDGSTSqEERQeIID 120 (2260)
..++++|||++.+..++.|...|+... +.+..+||+++.++|..+.+
T Consensus 242 ~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~ 321 (1490)
T PRK09751 242 LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQ 321 (1490)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHH
Confidence 356899999999999999998886431 12457889999999999999
Q ss_pred HhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhccccccc
Q 000096 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 173 (2260)
Q Consensus 121 rFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRI 173 (2260)
.|+++.- + +|++|.++.+|||+...++||+|+.|.+...|+||+||++|.
T Consensus 322 ~fK~G~L--r-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 322 ALKSGEL--R-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHhCCc--e-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9976554 3 688999999999999999999999999999999999999985
No 85
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=1e-07 Score=122.28 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
..|+.+|.+++..+...++.|||||++....+.|..+|...||++..|++ ...+|...|..|...... ++++|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 46999999999988889999999999999999999999999999999997 577999999999544443 7999999
Q ss_pred cccccCCCccC--------eeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000096 139 GGVGVNLQAAD--------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 139 GGeGLNLQaAD--------hVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyER 197 (2260)
+|+|+++.-.. +||.++.+-+...|.|++||++|.|..-....| -|.|+.++.+
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff-----vSleD~Lmr~ 717 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY-----VSLEDELMRL 717 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE-----echhHHHHHh
Confidence 99999998433 448899999999999999999999987766444 3556666544
No 86
>PRK02362 ski2-like helicase; Provisional
Probab=98.66 E-value=1.3e-07 Score=118.78 Aligned_cols=113 Identities=17% Similarity=0.071 Sum_probs=90.1
Q ss_pred hhcCCCeEEEEEcchhHHHHHHHHHhhc------------------------------------CceEEEEeCCCCHHHH
Q 000096 72 LKATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------------QYRYLRLDGHTSGGDR 115 (2260)
Q Consensus 72 LkenGhKVLIFSQfTdtLDILED~Lrkr------------------------------------GIkyvRLDGSTSqEER 115 (2260)
....+.++||||+.+..+..+...|... ...+..+||+++..+|
T Consensus 239 ~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR 318 (737)
T PRK02362 239 TLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHR 318 (737)
T ss_pred HHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHH
Confidence 3346789999999998877776666422 1356788999999999
Q ss_pred HHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe----eC-----CCCChhhhhhhcccccccCCcCcEEEEEEEe
Q 000096 116 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD-----TDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186 (2260)
Q Consensus 116 QeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII----FD-----pPWNParDLQAIGRAHRIGQKKEVrVYRLIT 186 (2260)
..+.+.|+.+.-. +|++|.++++|+||....+||. || .+.+...|.|++||++|.|....-.+|-|..
T Consensus 319 ~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 319 ELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred HHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEec
Confidence 9999999775443 6889999999999999888886 77 4678889999999999999876555555554
Q ss_pred C
Q 000096 187 V 187 (2260)
Q Consensus 187 e 187 (2260)
.
T Consensus 396 ~ 396 (737)
T PRK02362 396 S 396 (737)
T ss_pred C
Confidence 3
No 87
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.66 E-value=6.5e-08 Score=123.41 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=92.7
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCee
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 151 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~Lrk---rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhV 151 (2260)
...++|||+.....++.+.++|+. .++.++.+||.++..+|.++++.|..+. .+ +|++|+.+.+||++.++++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~--rk-VlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR--RK-VVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC--eE-EEEecchHhhcccccCceEE
Confidence 357899999999999999999976 4789999999999999999999995443 33 68899999999999999999
Q ss_pred EeeCCC----CChhh--------------hhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 152 IIFDTD----WNPQV--------------DLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 152 IIFDpP----WNPar--------------DLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
|.++.+ |||.. +.||.||++|. ++-.+|||+++..
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 999875 56655 67999988887 5778999998653
No 88
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=98.65 E-value=1.1e-08 Score=97.38 Aligned_cols=61 Identities=34% Similarity=0.590 Sum_probs=45.2
Q ss_pred CCCCCCCCchhHHHHHHHHhccccCCCCCCCCCccccccccccCCcccccccCCccccccccccCCCCHHHHH
Q 000096 292 PPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFE 364 (2260)
Q Consensus 292 PelPsRLi~ddELp~lye~~ei~e~p~~~v~~n~~~krk~e~~~~~d~q~yGRG~R~Rk~V~Y~DglTEeQwl 364 (2260)
..+|.|||+++|||.||..+.... ... ...........||||+|+||.|+|+|+|||+|||
T Consensus 14 ~~~p~RLm~e~ELPe~~~~d~~~~-----------~~~-~~~e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 14 KPYPSRLMEESELPEWYREDIEEE-----------LEK-EEEEEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CCCCccccchhhchHHHHhcchhh-----------hhh-hhhhhccchhhcccccccccccccCCCCCHHHhC
Confidence 468899999999999998763211 011 1111123456799999999999999999999996
No 89
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.62 E-value=4.3e-07 Score=109.44 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=119.5
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
..-.||++..-|++....+|.|+|||+...-.|....-.| |-+ .|.|.|++.+|.++++.|+. +..+.-+++ .
T Consensus 524 MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq~-n~~vNTIFl-S 596 (776)
T KOG1123|consen 524 MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQT-NPKVNTIFL-S 596 (776)
T ss_pred cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhccc-CCccceEEE-e
Confidence 3567999998888887789999999998766555444333 333 47899999999999999965 444444444 4
Q ss_pred cccccccCCCccCeeEeeCCCCCh-hhhhhhcccccccCCcC----cEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcC
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNP-QVDLQAQARAHRIGQKR----DVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 211 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNP-arDLQAIGRAHRIGQKK----EVrVYRLITegTVEEKIyERArrKLdLAekVIqa 211 (2260)
++|-..++|..|+++|-...+.-. .++.||.||+.|....+ +.+.|.|+..+|.|- |-..++.+-|+++-...
T Consensus 597 KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM--~YStKRQ~FLidQGYsf 674 (776)
T KOG1123|consen 597 KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM--YYSTKRQQFLIDQGYSF 674 (776)
T ss_pred eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH--HhhhhhhhhhhhcCceE
Confidence 999999999999999999998764 46789999999976443 388999999999884 33333444444432211
Q ss_pred Cc-----------cCCCCCHHHHHHHHHHHHHH
Q 000096 212 GF-----------FDNNTSAEDRREYLESLLRE 233 (2260)
Q Consensus 212 G~-----------FDnksSaEErrELLESLLre 233 (2260)
.. .-...+.++++++|..+|..
T Consensus 675 kVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a 707 (776)
T KOG1123|consen 675 KVITNLPGMENLEDLAYASKEEQLELLQKVLLA 707 (776)
T ss_pred EEeecCCCcCcCcccccCCHHHHHHHHHHHHhc
Confidence 10 11123556777777766654
No 90
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.1e-07 Score=115.21 Aligned_cols=105 Identities=14% Similarity=0.206 Sum_probs=96.5
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII 153 (2260)
..+...||||..+...+.|.++|...|+....+||++..++|..+-++|+.++.. ++++|.|.|-|||-.+...||+
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH 304 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK---VMVATNAFGMGIDKPDVRFVIH 304 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEeccccCccCCCCceEEEE
Confidence 3445689999999999999999999999999999999999999999999877666 7889999999999999999999
Q ss_pred eCCCCChhhhhhhcccccccCCcCcEEE
Q 000096 154 FDTDWNPQVDLQAQARAHRIGQKRDVLV 181 (2260)
Q Consensus 154 FDpPWNParDLQAIGRAHRIGQKKEVrV 181 (2260)
||+|-+...|.|-+||++|-|.......
T Consensus 305 ~~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 305 YDLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred ecCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999999997766443
No 91
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.59 E-value=2.2e-07 Score=116.66 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=90.2
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeE
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 152 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVI 152 (2260)
.+.++|||+.....++.+.+.|... ++.+..|||.+++ +.+.+++|.. ... +-+|++|+.+.+||++.+.++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~-~gk-~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYS-SKN-PSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhc-cCc-eeEEeccChhhccccccCeeEEE
Confidence 4578999999999999999999876 7999999999985 4577788732 223 33789999999999999999999
Q ss_pred eeC---CC---------CChhhhhhhcccccccCCcCcEEEEEEEeCCCHH
Q 000096 153 IFD---TD---------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191 (2260)
Q Consensus 153 IFD---pP---------WNParDLQAIGRAHRIGQKKEVrVYRLITegTVE 191 (2260)
.++ .+ .+.+.+.||.||++|. ++-.+|+|+++....
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLK 517 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhH
Confidence 997 22 2566788999999997 468899999887653
No 92
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.58 E-value=7.2e-08 Score=114.58 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=144.6
Q ss_pred hHHHHHHhccCCCchhhHHHHH------HHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcC
Q 000096 2 KRVEENLGSIGNSKGRSVHNSV------MELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT 75 (2260)
Q Consensus 2 KRVEKiLgSiGnsKgRSLfNiL------MQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLken 75 (2260)
.++.++|.++...++..+|... ..-|+-..||.++.+..+..-.-.. ......++...|..+|..+|.....
T Consensus 183 eql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~l-k~~f~~~~~a~K~aaLl~il~~~~~- 260 (529)
T KOG0337|consen 183 EQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELL-KVRFFRVRKAEKEAALLSILGGRIK- 260 (529)
T ss_pred HHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhh-hhheeeeccHHHHHHHHHHHhcccc-
Confidence 5678888888888877665543 3456667889988754333211111 1122345667899999999987643
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeC
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 155 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFD 155 (2260)
.++.+||+.....++++...|+..|+....|.|++.+..|..-+.+|+..... +|+.|+.+.+|+++.--+.||+||
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd 337 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYD 337 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc---eEEEehhhhccCCCcccccccccc
Confidence 56899999999999999999999999999999999999999999999776655 889999999999999999999999
Q ss_pred CCCChhhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 156 TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 156 pPWNParDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
.+-.+..+.+|.||+.|.|. .-..|-||+.+-
T Consensus 338 ~p~~~klFvhRVgr~aragr--tg~aYs~V~~~~ 369 (529)
T KOG0337|consen 338 FPPDDKLFVHRVGRVARAGR--TGRAYSLVASTD 369 (529)
T ss_pred CCCCCceEEEEecchhhccc--cceEEEEEeccc
Confidence 99999999999999999994 456777777553
No 93
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.56 E-value=1.6e-07 Score=119.80 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=92.3
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCee
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 151 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~Lrk---rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhV 151 (2260)
...++|||+.....++.+.+.|.. .++.++.+||.++..+|.+++..|..+. +-+|++|+.+.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~---rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR---RKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC---eEEEEecchHHhcccccCceEE
Confidence 467899999999999999999976 5788999999999999999999995432 3378999999999999999999
Q ss_pred EeeCCC----CChh--------------hhhhhcccccccCCcCcEEEEEEEeCCCH
Q 000096 152 IIFDTD----WNPQ--------------VDLQAQARAHRIGQKRDVLVLRFETVQTV 190 (2260)
Q Consensus 152 IIFDpP----WNPa--------------rDLQAIGRAHRIGQKKEVrVYRLITegTV 190 (2260)
|.++.. |||. .+.||.||++|. .+-.+|||+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 997765 4433 467888888886 47889999986543
No 94
>PRK01172 ski2-like helicase; Provisional
Probab=98.52 E-value=6.6e-07 Score=111.34 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=87.0
Q ss_pred HHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc-------------------------CceEEEEeCCCCHHHHHHHH
Q 000096 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-------------------------QYRYLRLDGHTSGGDRGALI 119 (2260)
Q Consensus 65 LdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr-------------------------GIkyvRLDGSTSqEERQeII 119 (2260)
+..++.+....++++|||+..+..++.+...|... ...+..+||+++.++|..+.
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 44556655567889999999999888777777432 12356789999999999999
Q ss_pred HHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCC---------CCChhhhhhhcccccccCCcCcEE
Q 000096 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT---------DWNPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 120 DrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDp---------PWNParDLQAIGRAHRIGQKKEVr 180 (2260)
+.|+.+.. + +|++|.+++.|+|+++ .+||++|. ++.+..+.|++||++|.|....-.
T Consensus 305 ~~f~~g~i--~-VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~ 370 (674)
T PRK01172 305 EMFRNRYI--K-VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGI 370 (674)
T ss_pred HHHHcCCC--e-EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcce
Confidence 99976543 3 6889999999999985 67787764 346678889999999999765533
No 95
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.51 E-value=2e-07 Score=110.76 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=87.8
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhcC---ceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeE
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 152 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~LrkrG---IkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVI 152 (2260)
-.|.||||.....+|-|+++|..+| |.++.++|..++.+|.+.++.|.+.+-. ||++|+++++||+++..-++|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEE
Confidence 4799999999999999999998764 6788999999999999999999776655 899999999999999999999
Q ss_pred eeCCCCChhhhhhhcccccccC
Q 000096 153 IFDTDWNPQVDLQAQARAHRIG 174 (2260)
Q Consensus 153 IFDpPWNParDLQAIGRAHRIG 174 (2260)
+.-+|-....|.+||||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999988853
No 96
>PRK00254 ski2-like helicase; Provisional
Probab=98.46 E-value=9.1e-07 Score=111.19 Aligned_cols=121 Identities=16% Similarity=0.030 Sum_probs=88.6
Q ss_pred HHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh---------------------------------cCceEEEEeCCCCH
Q 000096 66 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---------------------------------KQYRYLRLDGHTSG 112 (2260)
Q Consensus 66 drLLkKLkenGhKVLIFSQfTdtLDILED~Lrk---------------------------------rGIkyvRLDGSTSq 112 (2260)
..++..+...+.++|||++.+..+..+...|.. ....+..+||+++.
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 344445555788999999998876554443311 12347889999999
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe-------eCCCCC-hhhhhhhcccccccCCcCcEEEEEE
Q 000096 113 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-------FDTDWN-PQVDLQAQARAHRIGQKRDVLVLRF 184 (2260)
Q Consensus 113 EERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII-------FDpPWN-ParDLQAIGRAHRIGQKKEVrVYRL 184 (2260)
.+|..+.+.|+.+.-. +|++|.+.+.|+|+...+.||. |+.++- ...+.|++||++|.|..+.-.+|-+
T Consensus 308 ~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 308 TERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred HHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 9999999999765443 7889999999999998888874 333333 3477999999999987666666655
Q ss_pred EeCCC
Q 000096 185 ETVQT 189 (2260)
Q Consensus 185 ITegT 189 (2260)
...+.
T Consensus 385 ~~~~~ 389 (720)
T PRK00254 385 ATTEE 389 (720)
T ss_pred ecCcc
Confidence 55443
No 97
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.41 E-value=8.3e-07 Score=108.46 Aligned_cols=170 Identities=19% Similarity=0.213 Sum_probs=126.8
Q ss_pred CchhhHHHHHHHHHHHhcCCccccccc-----ccccccC----------C---ccccccccccccHHHHHHHHHHHhh--
Q 000096 14 SKGRSVHNSVMELRNICNHPYLSQLHA-----EEVDTLI----------P---KHYLPPIVRLCGKLEMLDRLLPKLK-- 73 (2260)
Q Consensus 14 sKgRSLfNiLMQLRKICNHPYLfqlSe-----EEVd~Ll----------P---e~~l~~LIRsSGKLELLdrLLkKLk-- 73 (2260)
.++.-|-.++-+||.+|-.-.++.++. +++...+ | ..++-.....+.|+.++.+|.+.-.
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~ 433 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFST 433 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhh
Confidence 555667788899999998554443322 1111000 0 0011111236789999999986432
Q ss_pred --cCC--CeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccC
Q 000096 74 --ATD--HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAAD 149 (2260)
Q Consensus 74 --enG--hKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaAD 149 (2260)
..| .+.|||++++..++.|.++|..+|++..-+|++++..+|..+-..|.+..-. .+++|.|.+.|+++. |+
T Consensus 434 ~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFP-AS 509 (830)
T COG1202 434 ESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA---AVVTTAALAAGVDFP-AS 509 (830)
T ss_pred hhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc---eEeehhhhhcCCCCc-hH
Confidence 122 5799999999999999999999999999999999999999999999665544 678999999999998 45
Q ss_pred eeEe----eCCCC-ChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 150 TVII----FDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 150 hVII----FDpPW-NParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
.||| +...| +|..+.|-.||++|.+-+..-.||-|+-.
T Consensus 510 QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 510 QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 5555 45556 89999999999999999888888888754
No 98
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.31 E-value=2.9e-06 Score=108.85 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=114.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.++.+.+.++...|+.|||||.+....++|..+|...|+++..|++.....+|..+.+.|+.+ . ++++|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEecc
Confidence 35699999999999999999999999999999999999999999999999999999999999999654 2 789999
Q ss_pred ccccccCCC--------------------------------------ccCeeEeeCCCCChhhhhhhcccccccCCcCcE
Q 000096 138 AGGVGVNLQ--------------------------------------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179 (2260)
Q Consensus 138 AGGeGLNLQ--------------------------------------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEV 179 (2260)
.+|+|+++. +.=|||.-+.+-|-..+.|--||++|.|.....
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 999999976 234889999999999999999999999988777
Q ss_pred EEEEEEeCCCHHHHHHHH
Q 000096 180 LVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 180 rVYRLITegTVEEKIyER 197 (2260)
+.| =|+|+.++.+
T Consensus 581 ~f~-----lSleD~l~~~ 593 (896)
T PRK13104 581 RFY-----LSLEDNLMRI 593 (896)
T ss_pred EEE-----EEcCcHHHHH
Confidence 666 3556666544
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.31 E-value=3.3e-06 Score=108.03 Aligned_cols=130 Identities=14% Similarity=0.119 Sum_probs=111.5
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.+|.+.+.++...++.|||||.+....++|...|...|+++..|+|. ..+|...|..|...... ++++|+
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecc
Confidence 3469999999998888899999999999999999999999999999999995 67999999999554443 789999
Q ss_pred ccccccCCCc--------------------------------------cCeeEeeCCCCChhhhhhhcccccccCCcCcE
Q 000096 138 AGGVGVNLQA--------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179 (2260)
Q Consensus 138 AGGeGLNLQa--------------------------------------ADhVIIFDpPWNParDLQAIGRAHRIGQKKEV 179 (2260)
.+|+|+++.- .=|||.-+.+-|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999999663 45889999999999999999999999998877
Q ss_pred EEEEEEeCCCHHHHHHHH
Q 000096 180 LVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 180 rVYRLITegTVEEKIyER 197 (2260)
+.| =|+|+.++.+
T Consensus 567 ~f~-----lSleD~l~~~ 579 (830)
T PRK12904 567 RFY-----LSLEDDLMRI 579 (830)
T ss_pred eEE-----EEcCcHHHHh
Confidence 766 3456555543
No 100
>PRK09694 helicase Cas3; Provisional
Probab=98.30 E-value=7.4e-06 Score=105.80 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcC---ceEEEEeCCCCHHHH----HHHHHHhhC-CCCCeEEEEE
Q 000096 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDR----GALIDKFNQ-QDSPFFIFLL 134 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrG---IkyvRLDGSTSqEER----QeIIDrFNk-~DSei~VLLL 134 (2260)
.++..++.. ...++++|||++..+.+..+.++|+..+ +.+..+||.+...+| .++++.|.+ +......+|+
T Consensus 548 ~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 548 TLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 344444443 3578899999999999999999998664 679999999999999 567889943 2222135789
Q ss_pred cccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCc
Q 000096 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 176 (2260)
Q Consensus 135 STRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQK 176 (2260)
+|++..+|||+ .+|.+|....| ...++||+||+||.|.+
T Consensus 627 aTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 627 ATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred ECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 99999999999 57988887666 46799999999999875
No 101
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.28 E-value=3e-06 Score=98.90 Aligned_cols=100 Identities=21% Similarity=0.188 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHhh-----cCCCeEEEEEcchhHHHHHHHHHhhcC--ceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 60 GKLEMLDRLLPKLK-----ATDHRVLFFSTMTRLLDVMEDYLTFKQ--YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 60 GKLELLdrLLkKLk-----enGhKVLIFSQfTdtLDILED~LrkrG--IkyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
-|...|.+++..+. ..+.|+|||++....++.|...|+..+ +.+..++|.++..+|.+.. .. .+
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~i 321 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DI 321 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CE
Confidence 45555555554442 356899999999999999999998764 6788999999999887653 12 27
Q ss_pred EEcccccccccCCCccCeeEeeCCCCChhhhhhhccccc
Q 000096 133 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 171 (2260)
Q Consensus 133 LLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAH 171 (2260)
|++|+++++|||+.. ++|| ++ +-++..|+||+||++
T Consensus 322 LVaTdv~~rGiDi~~-~~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 322 LLGTSTVDVGVDFKR-DWLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEecHHhcccCCCC-ceEE-EC-CCCHHHHhhhcccCC
Confidence 899999999999975 4666 66 668889999999975
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.28 E-value=3.2e-06 Score=108.44 Aligned_cols=130 Identities=10% Similarity=0.099 Sum_probs=113.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
.-.|+.++.+-+.++.+.|+.|||||.+....++|..+|...|+++..|++.....+|..+.+.|+.+. ++++|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 357999999999999999999999999999999999999999999999999999999999999995543 789999
Q ss_pred ccccccCCC-------------------------------------ccCeeEeeCCCCChhhhhhhcccccccCCcCcEE
Q 000096 138 AGGVGVNLQ-------------------------------------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 138 AGGeGLNLQ-------------------------------------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEVr 180 (2260)
.+|+|+++. +.=|||.-+.+-|-..+.|.-||++|.|..-.-+
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 999999976 3348999999999999999999999999887766
Q ss_pred EEEEEeCCCHHHHHHHH
Q 000096 181 VLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 181 VYRLITegTVEEKIyER 197 (2260)
.| =|+|+.++.+
T Consensus 586 f~-----lSlED~L~r~ 597 (908)
T PRK13107 586 FY-----LSMEDSLMRI 597 (908)
T ss_pred EE-----EEeCcHHHHH
Confidence 55 2455555543
No 103
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.23 E-value=3e-06 Score=112.04 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=88.5
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCce---EEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCee
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYR---YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 151 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIk---yvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhV 151 (2260)
...++|||+.....++.+.+.|...+++ ++.+||+++..+|.++++.+ .. +-+|++|+++.+||++.+.++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~-rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SG-RRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CC-eeEEEeccHHhhccccCcceEE
Confidence 4578999999999999999999887765 67899999999999987653 22 3478999999999999999999
Q ss_pred EeeC---------------CCCCh---hhhhhhcccccccCCcCcEEEEEEEeCCCH
Q 000096 152 IIFD---------------TDWNP---QVDLQAQARAHRIGQKRDVLVLRFETVQTV 190 (2260)
Q Consensus 152 IIFD---------------pPWNP---arDLQAIGRAHRIGQKKEVrVYRLITegTV 190 (2260)
|.++ ++..| ..+.||.||++|. .+-.+|+|+++...
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 9985 23223 5688999999998 36778999986543
No 104
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.16 E-value=4.3e-06 Score=110.75 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhc-CCCeEEEEEcchhHHHHHHHHHhhcC---ceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 61 KLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 61 KLELLdrLLkKLke-nGhKVLIFSQfTdtLDILED~LrkrG---IkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
++..+.+++..+.. ...++|||......++.+.+.|+..+ +.++.+||.++.++|.++++.| .. +-+|++|
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~-rkIVLAT 337 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SG-RRIVLAT 337 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CC-ceEEEec
Confidence 45555565655443 35789999999999999999998664 4588899999999999986554 12 2368899
Q ss_pred cccccccCCCccCeeEeeCCC----C--------------ChhhhhhhcccccccCCcCcEEEEEEEeCCCHH
Q 000096 137 RAGGVGVNLQAADTVIIFDTD----W--------------NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpP----W--------------NParDLQAIGRAHRIGQKKEVrVYRLITegTVE 191 (2260)
..+.+||++.+..+||.++.. | .-..+.||.||++|.| +-.+|||+++...+
T Consensus 338 NIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 338 NVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred cHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 999999999999999998732 1 3357889999999997 77789999866443
No 105
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.13 E-value=2e-05 Score=100.98 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcC-ceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccccc
Q 000096 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ-YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 141 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrG-IkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGe 141 (2260)
..+.+.|..+.++...+|||++.+.+.+.|...|+..+ ..+...||+.+.++|..+-++|.++. .+ .++||....+
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~--lr-avV~TSSLEL 316 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE--LK-AVVATSSLEL 316 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC--ce-EEEEccchhh
Confidence 34555555566666789999999999999999998887 88999999999999999999997665 44 5778899999
Q ss_pred ccCCCccCeeEeeCCCCChhhhhhhccccc-ccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000096 142 GVNLQAADTVIIFDTDWNPQVDLQAQARAH-RIGQKRDVLVLRFETVQTVEEQVRASAEHKL 202 (2260)
Q Consensus 142 GLNLQaADhVIIFDpPWNParDLQAIGRAH-RIGQKKEVrVYRLITegTVEEKIyERArrKL 202 (2260)
||+.-..|.||.|..|-.-...+||+||++ |+|. +--+++|+.+ .++.+..+...+.
T Consensus 317 GIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dllE~~vi~~~ 374 (814)
T COG1201 317 GIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDLLECLVLADL 374 (814)
T ss_pred ccccCCceEEEEeCCcHHHHHHhHhccccccccCC---cccEEEEecC-HHHHHHHHHHHHH
Confidence 999999999999999999999999999994 5554 4445566666 6666555544443
No 106
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.01 E-value=2.7e-05 Score=102.86 Aligned_cols=106 Identities=14% Similarity=0.234 Sum_probs=87.6
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhc------Cc---eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCC
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFK------QY---RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ 146 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~Lrkr------GI---kyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQ 146 (2260)
+.|.||||.....++.|.+.|... ++ .+..++|.++ +|.+++++|..+. ...+|++++...+|+|..
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~--~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER--LPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC--CCeEEEEecccccCCCcc
Confidence 379999999999988888776532 22 4567999875 6788999996533 336788999999999999
Q ss_pred ccCeeEeeCCCCChhhhhhhcccccccCC---cCcEEEEEEE
Q 000096 147 AADTVIIFDTDWNPQVDLQAQARAHRIGQ---KRDVLVLRFE 185 (2260)
Q Consensus 147 aADhVIIFDpPWNParDLQAIGRAHRIGQ---KKEVrVYRLI 185 (2260)
.+++||++.+.-++..|.|++||+.|+-- |....||.++
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 99999999999999999999999999754 6667888765
No 107
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.96 E-value=2.4e-05 Score=100.62 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=36.4
Q ss_pred cccccHHHHHHHHHHHhhcC---------CCeEEEEEcchhHHHHHHHHHhh
Q 000096 56 VRLCGKLEMLDRLLPKLKAT---------DHRVLFFSTMTRLLDVMEDYLTF 98 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLken---------GhKVLIFSQfTdtLDILED~Lrk 98 (2260)
.+..+|+..|.++|.++... ..+|||||++.+++..|.++|..
T Consensus 266 lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 266 LEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 35789999999999876543 46899999999999999999965
No 108
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.95 E-value=0.00027 Score=87.07 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccc
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGG 140 (2260)
-++-|..-+++..+.+.|+||-+-.+.|.+-|.+||...|+++.++|.....-+|.++|...+.+.-. +|+-....-
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLR 507 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLR 507 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhh
Confidence 33333333444456789999999999999999999999999999999999999999999999776554 677889999
Q ss_pred cccCCCccCeeEeeCCCC-----ChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000096 141 VGVNLQAADTVIIFDTDW-----NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 202 (2260)
Q Consensus 141 eGLNLQaADhVIIFDpPW-----NParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKL 202 (2260)
+||+|..+..|.++|-+- +-..++|-|||+.|-- ...|..|-=...+++++.|-+..+++.
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR~ 573 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAIDETERRRE 573 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999874 5667899999999943 334666655555677777776655443
No 109
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.93 E-value=4.8e-05 Score=93.35 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=75.1
Q ss_pred HHHHHHHHhhc--CceEEEEeCCCCHHHH--HHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCC--CC-h-
Q 000096 89 LDVMEDYLTFK--QYRYLRLDGHTSGGDR--GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD--WN-P- 160 (2260)
Q Consensus 89 LDILED~Lrkr--GIkyvRLDGSTSqEER--QeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpP--WN-P- 160 (2260)
.+.+++.|+.. +.++.++|+.+....+ .+++++|+.++.. +|+.|+....|+|+.+.+.|+++|.| .| |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 47777888655 7899999999876655 8999999776655 78899999999999999999766554 33 3
Q ss_pred --------hhhhhhcccccccCCcCcEEEEEEEe
Q 000096 161 --------QVDLQAQARAHRIGQKRDVLVLRFET 186 (2260)
Q Consensus 161 --------arDLQAIGRAHRIGQKKEVrVYRLIT 186 (2260)
..+.|+.||++|.+....|.|..+-.
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 46789999999988777776554443
No 110
>PRK09401 reverse gyrase; Reviewed
Probab=97.88 E-value=3.4e-05 Score=102.43 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchhH---HHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc-
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRL---LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS- 135 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTdt---LDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS- 135 (2260)
.|...|.++|..+ +.++|||++.... ++.|..+|+..|+++..+||++ .+.+++|.++. +.|++.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~--~~VLVata 384 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGE--VDVLVGVA 384 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCC--CCEEEEec
Confidence 5888888888755 4689999998777 9999999999999999999998 23469996655 4455554
Q ss_pred --ccccccccCCCc-cCeeEeeCCCC------Chhhhhhhccccccc
Q 000096 136 --IRAGGVGVNLQA-ADTVIIFDTDW------NPQVDLQAQARAHRI 173 (2260)
Q Consensus 136 --TRAGGeGLNLQa-ADhVIIFDpPW------NParDLQAIGRAHRI 173 (2260)
|+++++|||+.. ..+|||||.|- ....+.+|++|+-++
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 799999999998 89999999997 556677888888744
No 111
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.86 E-value=4.9e-05 Score=98.84 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=98.4
Q ss_pred hcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeE
Q 000096 73 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 152 (2260)
Q Consensus 73 kenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVI 152 (2260)
...+.-.||||..+..++.+..+|+..|+....+|.++...+|..+...|.... ++ +++.|=|.|-|||-.+...||
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~--~~-VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK--IR-VIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC--Ce-EEEEEeeccCCCCCCceeEEE
Confidence 355788999999999999999999999999999999999999999999997765 33 677889999999999999999
Q ss_pred eeCCCCChhhhhhhcccccccCCcCcEEEEE
Q 000096 153 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 183 (2260)
Q Consensus 153 IFDpPWNParDLQAIGRAHRIGQKKEVrVYR 183 (2260)
+|..|-+-.-|.|.+||++|-|+-..+..|+
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 9999999999999999999999987766654
No 112
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.76 E-value=0.00017 Score=91.22 Aligned_cols=95 Identities=24% Similarity=0.364 Sum_probs=75.9
Q ss_pred HHHHHHHHhhc--CceEEEEeCCCC--HHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCC--CC-h-
Q 000096 89 LDVMEDYLTFK--QYRYLRLDGHTS--GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD--WN-P- 160 (2260)
Q Consensus 89 LDILED~Lrkr--GIkyvRLDGSTS--qEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpP--WN-P- 160 (2260)
.+.+++.|+.. ++++.++|+.+. ..+|.+++++|.+++.. +|+.|+....|+|+.+.+.|+++|.| .| |
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 55677777654 789999999986 46799999999776655 78899999999999999999887665 23 3
Q ss_pred --------hhhhhhcccccccCCcCcEEEEEEEe
Q 000096 161 --------QVDLQAQARAHRIGQKRDVLVLRFET 186 (2260)
Q Consensus 161 --------arDLQAIGRAHRIGQKKEVrVYRLIT 186 (2260)
..+.|+.||++|.+....|.|..+-.
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 56899999999988777777664443
No 113
>PRK14701 reverse gyrase; Provisional
Probab=97.63 E-value=0.00015 Score=98.90 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchhH---HHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc---
Q 000096 63 EMLDRLLPKLKATDHRVLFFSTMTRL---LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI--- 136 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQfTdt---LDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST--- 136 (2260)
..|.++|..+ +...||||+.... ++.|..+|...|+++..+||+ |.+.+++|.+++.. +|++|
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~ 388 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATY 388 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCC
Confidence 5667777654 5789999998764 589999999999999999994 99999999776655 56666
Q ss_pred -cccccccCCCc-cCeeEeeCCCC---Chhhhhhhc-------------ccccccCCc
Q 000096 137 -RAGGVGVNLQA-ADTVIIFDTDW---NPQVDLQAQ-------------ARAHRIGQK 176 (2260)
Q Consensus 137 -RAGGeGLNLQa-ADhVIIFDpPW---NParDLQAI-------------GRAHRIGQK 176 (2260)
+.+++|||+.. ..+|||||.|- +...|.|.. +|++|-|..
T Consensus 389 ~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 389 YGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 58899999998 99999999997 776666665 777777653
No 114
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.60 E-value=0.00024 Score=94.65 Aligned_cols=88 Identities=10% Similarity=0.156 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcch---hHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc--
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMT---RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS-- 135 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfT---dtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS-- 135 (2260)
|...|.++|..+ +.++|||++.. ..++.|..+|+..|+++..+||+++ ++.+++|.++.. .||+.+
T Consensus 314 ~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~--~vLVata~ 384 (1171)
T TIGR01054 314 LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEI--DVLIGVAS 384 (1171)
T ss_pred HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCC--CEEEEecc
Confidence 456677777654 56899999998 9999999999999999999999986 378999976654 455554
Q ss_pred -ccccccccCCCc-cCeeEeeCCC
Q 000096 136 -IRAGGVGVNLQA-ADTVIIFDTD 157 (2260)
Q Consensus 136 -TRAGGeGLNLQa-ADhVIIFDpP 157 (2260)
|+++++||||.. .++|||||.|
T Consensus 385 ~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 385 YYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred ccCcccccCCCCccccEEEEECCC
Confidence 699999999998 7999999999
No 115
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.51 E-value=0.00021 Score=82.84 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=72.8
Q ss_pred HHHHHhhCCCCCeEEEEEcccccccccCCCcc--------CeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 117 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA--------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 117 eIIDrFNk~DSei~VLLLSTRAGGeGLNLQaA--------DhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
...+.|+.+. ..|+|+ ++||+.||.||.- .+-|+++++|+....+|-+||+||-||.....+..|++.-
T Consensus 52 ~e~~~F~~g~--k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE--KDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC--ceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 5667897764 445555 5999999999942 3457899999999999999999999998875555566666
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcC
Q 000096 189 TVEEQVRASAEHKLGVANQSITA 211 (2260)
Q Consensus 189 TVEEKIyERArrKLdLAekVIqa 211 (2260)
..|.+......+|+.........
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~g 151 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRG 151 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccC
Confidence 77889999999998877766554
No 116
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.48 E-value=0.00077 Score=87.62 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHH----HHHhhcC----ceEEEEeCCCCHHHHHHHHHHhhCCCCCeEE
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME----DYLTFKQ----YRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTdtLDILE----D~LrkrG----IkyvRLDGSTSqEERQeIIDrFNk~DSei~V 131 (2260)
.++..+..++..+..++-|.|+|+.+...+..+. ..+...+ ..+..++|++...+|.++...|+.++..
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~--- 366 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL--- 366 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc---
Confidence 6888899999988999999999999999999886 4444444 5688899999999999999999877665
Q ss_pred EEEcccccccccCCCccCeeEeeCCCC-ChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000096 132 FLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 132 LLLSTRAGGeGLNLQaADhVIIFDpPW-NParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyER 197 (2260)
++++|.+.-.|+++...+.||.+-.|- .-..+.|+.||++|-+| ...++...-.+-++.++...
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~--~~l~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ--ESLVLVVLRSDPLDSYYLRH 431 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC--CceEEEEeCCCccchhhhhC
Confidence 899999999999999999999999998 67889999999999994 43344344477777776544
No 117
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.45 E-value=0.0002 Score=86.31 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=94.7
Q ss_pred EEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCC
Q 000096 79 VLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW 158 (2260)
Q Consensus 79 VLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPW 158 (2260)
-||||..++.++.|.-.|..+||....+|.+++..+|..+.+.|-.++-+ +|+.|-..|.|++-.+...||+++++-
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchh
Confidence 59999999999999999999999999999999999999999999776666 688889999999999999999999999
Q ss_pred ChhhhhhhcccccccCCcCcEEEEE
Q 000096 159 NPQVDLQAQARAHRIGQKRDVLVLR 183 (2260)
Q Consensus 159 NParDLQAIGRAHRIGQKKEVrVYR 183 (2260)
|-+-|.|--||++|-|-..-++.|+
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hhHHHHHhccccccCCCccceeeee
Confidence 9999999999999999877777774
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.42 E-value=0.00051 Score=84.96 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHH
Q 000096 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMED 94 (2260)
Q Consensus 17 RSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED 94 (2260)
+.|+.+...=-++|-.|..+.+...-.... .....-..++.-.+|..+..++..+. ..|.=|+-||.. .+-.+..
T Consensus 298 rALLGl~AdEiHLCGepsvldlV~~i~k~T-Gd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk--~I~~~k~ 374 (700)
T KOG0953|consen 298 RALLGLAADEIHLCGEPSVLDLVRKILKMT-GDDVEVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKK--DIFTVKK 374 (700)
T ss_pred HHHHhhhhhhhhccCCchHHHHHHHHHhhc-CCeeEEEeecccCcceehhhhhhhhccCCCCCeEEEeehh--hHHHHHH
Confidence 455555555567888887754322111100 00000011112234444455554443 467778888753 3334555
Q ss_pred HHhhcCce-EEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCC-C--------Chhhhh
Q 000096 95 YLTFKQYR-YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD-W--------NPQVDL 164 (2260)
Q Consensus 95 ~LrkrGIk-yvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpP-W--------NParDL 164 (2260)
.+..+|.. +++|.|+.+++.|.+....||++...|.| |+.++|.|-||||. .+.||||++- + .-.+..
T Consensus 375 kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqik 452 (700)
T KOG0953|consen 375 KIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIK 452 (700)
T ss_pred HHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEEEEeecccCCcccceeccHHHHH
Confidence 56666655 99999999999999999999998888776 66779999999985 7888888775 2 334456
Q ss_pred hhcccccccCCcCc
Q 000096 165 QAQARAHRIGQKRD 178 (2260)
Q Consensus 165 QAIGRAHRIGQKKE 178 (2260)
|--||++|.|.+-+
T Consensus 453 QIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 453 QIAGRAGRFGSKYP 466 (700)
T ss_pred HHhhcccccccCCc
Confidence 99999999987643
No 119
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.40 E-value=0.00076 Score=86.20 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=105.4
Q ss_pred HHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCC-CCCeEEEEEcccccccccC
Q 000096 66 DRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ-DSPFFIFLLSIRAGGVGVN 144 (2260)
Q Consensus 66 drLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~-DSei~VLLLSTRAGGeGLN 144 (2260)
..++..-...+.|++|-++....+..+...|+..+.+++.||+.....+|.+.++++..- ...-..++++|++.-.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 333444456789999999999999999999998887899999999999999999865431 1112247889999999999
Q ss_pred CCccCeeEeeCCCCCh-hhhhhhcccccccC--CcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Q 000096 145 LQAADTVIIFDTDWNP-QVDLQAQARAHRIG--QKRDVLVLRFETVQTVEEQVRASAEHKLGVANQS 208 (2260)
Q Consensus 145 LQaADhVIIFDpPWNP-arDLQAIGRAHRIG--QKKEVrVYRLITegTVEEKIyERArrKLdLAekV 208 (2260)
+. .|.+|- ...| ....||.||++|.| ....++||..........+.++....+.......
T Consensus 510 id-fd~mIT---e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (733)
T COG1203 510 ID-FDVLIT---ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEEL 572 (733)
T ss_pred cc-cCeeee---cCCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccccc
Confidence 77 666554 2233 34689999999999 5566888888888888888777776665544443
No 120
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.30 E-value=0.00011 Score=84.28 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=66.2
Q ss_pred cccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 54 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 54 ~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
.-.+...|-..|.+||.-|. =.+|+||......+ . |++ + |
T Consensus 263 vkLke~eKNrkl~dLLd~Le--FNQVvIFvKsv~Rl------------------------------~-f~k-----r--~ 302 (387)
T KOG0329|consen 263 VKLKENEKNRKLNDLLDVLE--FNQVVIFVKSVQRL------------------------------S-FQK-----R--L 302 (387)
T ss_pred Hhhhhhhhhhhhhhhhhhhh--hcceeEeeehhhhh------------------------------h-hhh-----h--h
Confidence 33455678888888887653 35789998765541 1 411 1 6
Q ss_pred EcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcC
Q 000096 134 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 177 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKK 177 (2260)
++|+..|+|+++.+.|.+|+||.+-.+..|++|.+|++|.|-+.
T Consensus 303 vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 303 VATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred HHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 78899999999999999999999999999999999999999654
No 121
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.27 E-value=0.0015 Score=84.70 Aligned_cols=130 Identities=12% Similarity=0.173 Sum_probs=104.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.++.+-+.++...|+-|||.|.+...-+.|..+|...|+++-.|+.... +.-..+|.+ ++.. -.+.++|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa~--AG~~--GaVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIAK--AGQK--GAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHHh--CCCC--CeEEEecc
Confidence 457999999989888899999999999999999999999999999999988643 223334443 3322 24788999
Q ss_pred ccccccCCCccC--------eeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000096 138 AGGVGVNLQAAD--------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 138 AGGeGLNLQaAD--------hVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyER 197 (2260)
.+|+|.++.-.. |||..+.+-+-..+.|..||++|.|.....+.| =|+|+.++.+
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~-----lSLeD~L~r~ 545 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF-----ISLDDQLFRR 545 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE-----EecchHHHHH
Confidence 999999987544 999999999999999999999999988777666 3455555543
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.13 E-value=0.0027 Score=81.42 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=106.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.++.+-+.++.+.|+-|||.+.+...-++|...|...|+++..|+.... ++-..+|.+= +.. ..+.++|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~--gaVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKY--GAVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCC--CcEEEEec
Confidence 356999999988888899999999999999999999999999999999988644 3445566553 322 24788999
Q ss_pred ccccccCCC---------------ccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000096 138 AGGVGVNLQ---------------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 198 (2260)
Q Consensus 138 AGGeGLNLQ---------------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERA 198 (2260)
.+|+|-++. +.=|||.-..+-|-..+.|..||++|.|..-..+.| =|+|+.++.+.
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~-----lSleDdl~~~f 554 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF-----VSLEDDVVAAN 554 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE-----EEcchhHHHhc
Confidence 999998876 345899999999999999999999999998777666 35566666544
No 123
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.03 E-value=0.004 Score=78.99 Aligned_cols=113 Identities=14% Similarity=0.234 Sum_probs=86.3
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchh--------HHHHHHHHHh--hcCceEEEEeCCCCHHHHHHHHHHhhCCCC
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTR--------LLDVMEDYLT--FKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTd--------tLDILED~Lr--krGIkyvRLDGSTSqEERQeIIDrFNk~DS 127 (2260)
...+-+++.++..+ ...|+++.+.|.-.+ ....+...|+ +.++++..+||.++.+++.+++.+|+.+..
T Consensus 456 ~~~~~~v~e~i~~e-i~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~ 534 (677)
T COG1200 456 HERRPEVYERIREE-IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEI 534 (677)
T ss_pred cccHHHHHHHHHHH-HHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCC
Confidence 33344444444444 458999988885543 2334444443 236778999999999999999999987666
Q ss_pred CeEEEEEcccccccccCCCccCeeEeeCCC-CChhhhhhhcccccccC
Q 000096 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIG 174 (2260)
Q Consensus 128 ei~VLLLSTRAGGeGLNLQaADhVIIFDpP-WNParDLQAIGRAHRIG 174 (2260)
. +|++|.+.-.|+|+.+|+.+|++|.. +--++.-|--||++|-+
T Consensus 535 ~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~ 579 (677)
T COG1200 535 D---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD 579 (677)
T ss_pred c---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCC
Confidence 6 79999999999999999999999987 67778889999999954
No 124
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.012 Score=70.45 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=94.6
Q ss_pred HHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccccc
Q 000096 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 141 (2260)
Q Consensus 64 LLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGe 141 (2260)
.|.+.|++-..++.-+|||.....+++-+...|+.. ...+..+|... ..|.+.+++|+++.-. +|++|....+
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~---lLiTTTILER 367 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT---LLITTTILER 367 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE---EEEEeehhhc
Confidence 577888887888999999999999999999988432 23345566654 4899999999776544 7999999999
Q ss_pred ccCCCccCeeEeeCCC--CChhhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 142 GVNLQAADTVIIFDTD--WNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 142 GLNLQaADhVIIFDpP--WNParDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
|+++.+.+..++---. +.-+...|--||++|--..-+-.|+.|..--|
T Consensus 368 GVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 368 GVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred ccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 9999999999886555 78888999999999976655555555554444
No 125
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.72 E-value=0.013 Score=77.84 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=93.0
Q ss_pred HHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCC
Q 000096 68 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 145 (2260)
Q Consensus 68 LLkKLkenGhKVLIFSQfTdtLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNL 145 (2260)
|++++. +|.+|-.-.+....+..+...|+.. ..++...||.|+..+-.+++..|.++... +|+||-..-.||++
T Consensus 796 I~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d---VLv~TTIIEtGIDI 871 (1139)
T COG1197 796 ILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD---VLVCTTIIETGIDI 871 (1139)
T ss_pred HHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC---EEEEeeeeecCcCC
Confidence 445543 5667777778888888888888754 56789999999999999999999776665 78899999999999
Q ss_pred CccCeeEeeCCC-CChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 146 QAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 146 QaADhVIIFDpP-WNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
.+||++|+-+-+ +--++.-|--||++|-. +.-+.|-|+..
T Consensus 872 PnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 872 PNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred CCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 999999998877 67778889888888853 55677777764
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.64 E-value=0.011 Score=77.75 Aligned_cols=129 Identities=12% Similarity=0.150 Sum_probs=103.7
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
..|+.++..-+..+.+.|+-|||-|.+...-+.|...|...|+++..|+.... ..-..+|.+- +.. -.+.++|..
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~A--G~~--g~VTIATNm 625 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGA--GKL--GAVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhc--CCC--CcEEEeecc
Confidence 57999999999888999999999999999999999999999999999988633 3333455442 332 247889999
Q ss_pred cccccCCC--------ccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000096 139 GGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 197 (2260)
Q Consensus 139 GGeGLNLQ--------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyER 197 (2260)
+|+|.++. +.=|||.-..+-|...+.|..||++|.|.......| =|+|+.++.+
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~-----lSlEDdL~~~ 687 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF-----LSFEDRLMRL 687 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE-----EEcchHHHHH
Confidence 99998865 345899999999999999999999999988776655 2456666544
No 127
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.39 E-value=0.017 Score=75.03 Aligned_cols=111 Identities=27% Similarity=0.202 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh----c---------------------------------CceEE
Q 000096 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----K---------------------------------QYRYL 104 (2260)
Q Consensus 62 LELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk----r---------------------------------GIkyv 104 (2260)
...+..++....+.+..+|||++++.........|+. . -..+.
T Consensus 239 ~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gva 318 (766)
T COG1204 239 DNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVA 318 (766)
T ss_pred hHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcc
Confidence 3566666666678899999999999876655555541 0 01245
Q ss_pred EEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCC----------CCChhhhhhhcccccccC
Q 000096 105 RLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT----------DWNPQVDLQAQARAHRIG 174 (2260)
Q Consensus 105 RLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDp----------PWNParDLQAIGRAHRIG 174 (2260)
..|.+++..+|+-+-+.|+++.-+ +|++|...+.|+||+ |++||+.|. +-+...++|-.||++|.|
T Consensus 319 fHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 319 FHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred ccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 567889999999999999776554 688999999999998 666766443 335677889999999998
Q ss_pred Cc
Q 000096 175 QK 176 (2260)
Q Consensus 175 QK 176 (2260)
=.
T Consensus 395 ~d 396 (766)
T COG1204 395 YD 396 (766)
T ss_pred cC
Confidence 53
No 128
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.19 E-value=0.017 Score=76.29 Aligned_cols=129 Identities=14% Similarity=0.191 Sum_probs=103.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.++.+-+..+...|+-|||-+.+...-++|.++|..+||++-+|+.... .+-..++.+= +... .+-++|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCCC--cEEEecc
Confidence 357999999999999999999999999999999999999999999988877644 2333455442 3222 3788999
Q ss_pred ccccccCCC--------ccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHH
Q 000096 138 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 196 (2260)
Q Consensus 138 AGGeGLNLQ--------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyE 196 (2260)
.+|+|-++. +.=|||.-+.+-+...+.|..||++|.|.....+.|- |+|+.++.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SLEDdLmr 746 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYV-----SLEDNLMR 746 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEE-----EcccHHHH
Confidence 999998877 5679999999999999999999999999887766552 44555543
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.05 E-value=0.16 Score=67.15 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=104.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.++.+-+..+.+.|+-|||-+.+...-+.|..+|...|+++-.|+.... ++-..+|.+ ++... .+.++|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CCCCC--cEEEecc
Confidence 457999999999999999999999999999999999999999999988877643 333445554 33332 4788999
Q ss_pred ccccccCCC-------------------------------------ccCeeEeeCCCCChhhhhhhcccccccCCcCcEE
Q 000096 138 AGGVGVNLQ-------------------------------------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 138 AGGeGLNLQ-------------------------------------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEVr 180 (2260)
.+|+|-++. +.=|||.-+.+-|-..+.|..||++|.|..-..+
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999998875 3458999999999999999999999999887766
Q ss_pred EEEEEeCCCHHHHHHHHH
Q 000096 181 VLRFETVQTVEEQVRASA 198 (2260)
Q Consensus 181 VYRLITegTVEEKIyERA 198 (2260)
.|- |+|+.++.+.
T Consensus 586 f~l-----SlED~Lmr~f 598 (913)
T PRK13103 586 FYL-----SLEDSLMRIF 598 (913)
T ss_pred EEE-----EcCcHHHHhh
Confidence 663 3455555443
No 130
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.04 E-value=0.026 Score=70.46 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=98.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh----cC----ceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----KQ----YRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk----rG----IkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
+.+.|+....+|+.++...+-|.|-||..+..++++....+. -+ -.+..+.|+...++|.++-...-. +.
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~--G~ 583 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG--GK 583 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC--Ce
Confidence 346788888999999999999999999999988776544321 11 124567889888888887664422 22
Q ss_pred eEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHH
Q 000096 129 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 193 (2260)
Q Consensus 129 i~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEK 193 (2260)
-+-+++|.|..+||++-.-|.|+.+..|+.-+.+.|..||++|... ....|| ......|+..
T Consensus 584 -L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk-~SLavy-va~~~PVDQ~ 645 (1034)
T KOG4150|consen 584 -LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK-PSLAVY-VAFLGPVDQY 645 (1034)
T ss_pred -eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC-CceEEE-EEeccchhhH
Confidence 3357899999999999999999999999999999999999999652 223333 3334455543
No 131
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.90 E-value=0.055 Score=69.21 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=79.2
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhc-----CceEEEEeCCCCHH---------------------HHHHHHHHhhCCCCCe
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGG---------------------DRGALIDKFNQQDSPF 129 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~Lrkr-----GIkyvRLDGSTSqE---------------------ERQeIIDrFNk~DSei 129 (2260)
+.|.+|||.++..+..+.+.|... +...+.+++..... .+.+++++|.++ ..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~ 592 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENP 592 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCc
Confidence 589999999999998888887443 34556677764432 234789999653 345
Q ss_pred EEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhccccccc-C-CcCcEEEEEEEe
Q 000096 130 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-G-QKRDVLVLRFET 186 (2260)
Q Consensus 130 ~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRI-G-QKKEVrVYRLIT 186 (2260)
.+ |+..+....|+|.+.++++++.-+--. +.++|+++|+.|+ . .|....|+.|+-
T Consensus 593 ~i-lIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 593 KL-LIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred eE-EEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 55 555699999999999999988766554 5689999999995 4 344577877763
No 132
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=95.78 E-value=0.032 Score=67.24 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=100.4
Q ss_pred ccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 59 CGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 59 SGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
+.--+.+.++.+-+. -.|+.-||||-.....+.+...|+..||..-.+|..+.+.+|..+-+.|-.+. ++ +++.|
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~e--iq-vivat 374 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGE--IQ-VIVAT 374 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccc--eE-EEEEE
Confidence 333344444444333 23688899999999999999999999999999999999999998888885543 44 56778
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhh-------------------------------------------hccccccc
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQ-------------------------------------------AQARAHRI 173 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQ-------------------------------------------AIGRAHRI 173 (2260)
-+.|.||+-.+...||+-.++-.-..|.| --||++|-
T Consensus 375 vafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd 454 (695)
T KOG0353|consen 375 VAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRD 454 (695)
T ss_pred eeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccC
Confidence 99999999999999999999999999999 56899999
Q ss_pred CCcCcEEEEEEE
Q 000096 174 GQKRDVLVLRFE 185 (2260)
Q Consensus 174 GQKKEVrVYRLI 185 (2260)
|++.++..|+-+
T Consensus 455 ~~~a~cilyy~~ 466 (695)
T KOG0353|consen 455 DMKADCILYYGF 466 (695)
T ss_pred CCcccEEEEech
Confidence 999887666543
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.32 E-value=0.1 Score=68.39 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=63.5
Q ss_pred HHHHHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 64 MLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 64 LLdrLLkKLk-enGhKVLIFSQfTdtLDILED~Lrk----rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
.+.+.|.++. ..+.++|||+.+..+++.+...|.. .++.++ ..+.. ..|.+++++|+..+.. +|+.+..
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~---iLlgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKA---ILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCe---EEEEcce
Confidence 3444444443 3557899999999999999999864 344433 23322 5799999999765443 6778899
Q ss_pred cccccCCCcc--CeeEeeCCCC
Q 000096 139 GGVGVNLQAA--DTVIIFDTDW 158 (2260)
Q Consensus 139 GGeGLNLQaA--DhVIIFDpPW 158 (2260)
..+|+|+.+. ..||+.-+||
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred eecccccCCCceEEEEEeCCCC
Confidence 9999999964 4677777776
No 134
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.27 E-value=0.078 Score=71.02 Aligned_cols=96 Identities=27% Similarity=0.371 Sum_probs=73.3
Q ss_pred CCCeEEEEEcchh----HHHHHH----------HHHhh-----------------------cCceEEEEeCCCCHHHHHH
Q 000096 75 TDHRVLFFSTMTR----LLDVME----------DYLTF-----------------------KQYRYLRLDGHTSGGDRGA 117 (2260)
Q Consensus 75 nGhKVLIFSQfTd----tLDILE----------D~Lrk-----------------------rGIkyvRLDGSTSqEERQe 117 (2260)
..++||||.+++. +...|. .+++. ..+.+...|.++...+|..
T Consensus 545 gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~ 624 (1674)
T KOG0951|consen 545 GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDREL 624 (1674)
T ss_pred CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHH
Confidence 4489999998876 455555 44421 1256788899999999999
Q ss_pred HHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe-----eCCC---C---ChhhhhhhcccccccC
Q 000096 118 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-----FDTD---W---NPQVDLQAQARAHRIG 174 (2260)
Q Consensus 118 IIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII-----FDpP---W---NParDLQAIGRAHRIG 174 (2260)
.-+.|.++.- + +|++|...+.|+||. |++||+ ||+. | .|...+|..||++|.+
T Consensus 625 ~EdLf~~g~i--q-vlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 625 VEDLFADGHI--Q-VLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred HHHHHhcCce--e-EEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 9999965543 3 688999999999998 667776 5554 4 5677889999999976
No 135
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.04 E-value=0.064 Score=57.40 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=54.8
Q ss_pred hcCCCeEEEEEcchhHHHHHHHHHhhcC----ceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc--ccccccCCC
Q 000096 73 KATDHRVLFFSTMTRLLDVMEDYLTFKQ----YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR--AGGVGVNLQ 146 (2260)
Q Consensus 73 kenGhKVLIFSQfTdtLDILED~LrkrG----IkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR--AGGeGLNLQ 146 (2260)
...+.++|||+.+-..++.+.++|+... +.++ .. ....+..++++|...... +|+++. ...+|+|+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHHHhccCe---EEEEEecccEEEeecCC
Confidence 3456899999999999999999997653 3332 22 245899999999764333 566666 788999999
Q ss_pred c--cCeeEeeCCCC
Q 000096 147 A--ADTVIIFDTDW 158 (2260)
Q Consensus 147 a--ADhVIIFDpPW 158 (2260)
. +..||+.-+|+
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 5 88999999987
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=94.57 E-value=0.21 Score=65.92 Aligned_cols=85 Identities=9% Similarity=0.090 Sum_probs=67.5
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCC-CHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHT-SGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGST-SqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
...|+.++.+-+..+...|+-|||-|.+...-+.|...|...|+++-.|+... ..++-..+|.+= +.. -.+-++|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~~--G~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GRK--GSITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CCC--CcEEEec
Confidence 34699888888888889999999999999999999999999999999999864 234445566552 322 2478899
Q ss_pred cccccccCCC
Q 000096 137 RAGGVGVNLQ 146 (2260)
Q Consensus 137 RAGGeGLNLQ 146 (2260)
..+|+|.++.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999996643
No 137
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.95 E-value=0.33 Score=61.30 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=63.4
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCce-EEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCc--cCe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--ADT 150 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIk-yvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQa--ADh 150 (2260)
..+.++|||+.+-.+|..+.++|...... .+...|... +..++++|...... .|++.+....+|+|+.. ...
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeE
Confidence 44568999999999999999999776653 455556554 55899999776553 58888999999999995 588
Q ss_pred eEeeCCCCC
Q 000096 151 VIIFDTDWN 159 (2260)
Q Consensus 151 VIIFDpPWN 159 (2260)
||+.-.||-
T Consensus 552 vvI~~lPfp 560 (654)
T COG1199 552 VVIVGLPFP 560 (654)
T ss_pred EEEEecCCC
Confidence 999888873
No 138
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=93.89 E-value=0.23 Score=64.92 Aligned_cols=122 Identities=15% Similarity=0.226 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhcC---C---CeEEEEEcchhHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHhhCCCCCe
Q 000096 61 KLEMLDRLLPKLKAT---D---HRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSPF 129 (2260)
Q Consensus 61 KLELLdrLLkKLken---G---hKVLIFSQfTdtLDILED~Lrkr-----GIkyvRLDGSTSqEERQeIIDrFNk~DSei 129 (2260)
.-+.+.+.|..+... | .|.||||...+..++|...|... +--+..|+|... +-+..|+.|-. +..+
T Consensus 405 ~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~ 481 (875)
T COG4096 405 RTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID-KEKY 481 (875)
T ss_pred hHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh-cCCC
Confidence 344555555544433 3 69999999999999999999533 233567888755 55667888855 4556
Q ss_pred EEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhccccccc-------CCcCc-EEEEEEE
Q 000096 130 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-------GQKRD-VLVLRFE 185 (2260)
Q Consensus 130 ~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRI-------GQKKE-VrVYRLI 185 (2260)
..|.++.+..-.|++...+-.++|+-.--.-..+.|-+||.-|+ ||.|. ..||.|+
T Consensus 482 P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 482 PRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred CceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 66889999999999999999999999999999999999999986 23333 6666665
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.33 E-value=0.44 Score=63.42 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=65.5
Q ss_pred HHHHHHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhhcCc--eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccc
Q 000096 63 EMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 139 (2260)
Q Consensus 63 ELLdrLLkKLk-enGhKVLIFSQfTdtLDILED~LrkrGI--kyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAG 139 (2260)
..+.+.|..+. ..+.++|||..+..++..+.++|..... .+..+.=++....|.+++++|+..... +|+.+...
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 34555554444 4566888888888999988888864321 122232223334689999999764433 56677888
Q ss_pred ccccCCCc--cCeeEeeCCCC-Chh
Q 000096 140 GVGVNLQA--ADTVIIFDTDW-NPQ 161 (2260)
Q Consensus 140 GeGLNLQa--ADhVIIFDpPW-NPa 161 (2260)
.+|+|+.+ ...||+.-+|| +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 89999996 58999998888 554
No 140
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=92.14 E-value=0.71 Score=61.80 Aligned_cols=105 Identities=19% Similarity=0.091 Sum_probs=72.4
Q ss_pred HhhcCCCeEEEEEcchhHHHHHHHHHhh----cC-------------------ceEEEEeCCCCHHHHHHHHHHhhCCCC
Q 000096 71 KLKATDHRVLFFSTMTRLLDVMEDYLTF----KQ-------------------YRYLRLDGHTSGGDRGALIDKFNQQDS 127 (2260)
Q Consensus 71 KLkenGhKVLIFSQfTdtLDILED~Lrk----rG-------------------IkyvRLDGSTSqEERQeIIDrFNk~DS 127 (2260)
++..+|+.|+||+..+...-...+.|.. .| ......|.++...+|+-.-+.|..+.-
T Consensus 344 e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i 423 (1230)
T KOG0952|consen 344 EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHI 423 (1230)
T ss_pred HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCc
Confidence 3456899999999988754444444421 11 123445677888999999999955443
Q ss_pred CeEEEEEcccccccccCCCccCeeEeeCCCCChhh----------hhhhcccccccCCcCc
Q 000096 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV----------DLQAQARAHRIGQKRD 178 (2260)
Q Consensus 128 ei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNPar----------DLQAIGRAHRIGQKKE 178 (2260)
. +|++|...+.|.||++-..+|---.-|++.. .+|-+||++|..=...
T Consensus 424 ~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 424 K---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred e---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 3 6889999999999995444444444466544 4799999999764333
No 141
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.92 E-value=0.86 Score=58.88 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhc-CCCeEEEEEcchhHHHHHHHHHhhcCc-------eEEEEeCCCCHHHHHHHHHHhhCC-CCCeEEEE
Q 000096 63 EMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQY-------RYLRLDGHTSGGDRGALIDKFNQQ-DSPFFIFL 133 (2260)
Q Consensus 63 ELLdrLLkKLke-nGhKVLIFSQfTdtLDILED~LrkrGI-------kyvRLDGSTSqEERQeIIDrFNk~-DSei~VLL 133 (2260)
..|.++|..+.. ....+|||..+-..|+.+.+.+...++ +.+.+.+.. ..++.+++++|.+. +..-..+|
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEE
Confidence 344555544433 467899999988888888887764432 234444432 25889999999642 11111245
Q ss_pred Ecc--cccccccCCCc--cCeeEeeCCCC-Ch
Q 000096 134 LSI--RAGGVGVNLQA--ADTVIIFDTDW-NP 160 (2260)
Q Consensus 134 LST--RAGGeGLNLQa--ADhVIIFDpPW-NP 160 (2260)
++. ....+|||+.+ +..||++-+|+ ||
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 555 57889999995 89999999998 55
No 142
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=91.87 E-value=0.1 Score=69.40 Aligned_cols=28 Identities=39% Similarity=0.606 Sum_probs=23.8
Q ss_pred cCCCchhhHHHHHHHHHHHhcCCccccc
Q 000096 11 IGNSKGRSVHNSVMELRNICNHPYLSQL 38 (2260)
Q Consensus 11 iGnsKgRSLfNiLMQLRKICNHPYLfql 38 (2260)
+..+...+++|+|||||||||||-||..
T Consensus 880 LkSGhfmsVlnilmqLrKvCNHPnLfEp 907 (1958)
T KOG0391|consen 880 LKSGHFMSVLNILMQLRKVCNHPNLFEP 907 (1958)
T ss_pred hhcCchhHHHHHHHHHHHHcCCCCcCCC
Confidence 3456677999999999999999999854
No 143
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.74 E-value=1.1 Score=59.07 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccc
Q 000096 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 142 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeG 142 (2260)
+.+.+.|..+...+.++|||..+..+|+.+.+.|....+.. ...|... .|.+++++|+..+.. +|+.+...-+|
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEG 707 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCC
Confidence 35555555555667899999999999999888887655444 5556433 367799999764443 67777889999
Q ss_pred cCCC--ccCeeEeeCCCC
Q 000096 143 VNLQ--AADTVIIFDTDW 158 (2260)
Q Consensus 143 LNLQ--aADhVIIFDpPW 158 (2260)
+|+. .+..||+.-+|+
T Consensus 708 VD~p~~~~~~viI~kLPF 725 (820)
T PRK07246 708 VDFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCCeEEEEEecCCC
Confidence 9996 356677777664
No 144
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=91.38 E-value=1.7 Score=54.33 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=94.4
Q ss_pred ccHHHHHHH-HHHHhh-c-CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 59 CGKLEMLDR-LLPKLK-A-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 59 SGKLELLdr-LLkKLk-e-nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
..++..+.+ +|+.+. . ...++|||...--..-.|..+|+..++.|+.++--++..+-.++-..|..+ ...++|.+
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G--~~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG--RKPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC--CceEEEEE
Confidence 467777666 777776 2 347899998777777778999999999999999999999999999999665 45677777
Q ss_pred ccccc-cccCCCccCeeEeeCCCCChhhhhhhcccccccCC----cCcEEEEEEEe
Q 000096 136 IRAGG-VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ----KRDVLVLRFET 186 (2260)
Q Consensus 136 TRAGG-eGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQ----KKEVrVYRLIT 186 (2260)
-|+.= +=..+.++.+||+|.+|-+|.-|..-+.-+..-.+ .....|.-|++
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lys 413 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYS 413 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEec
Confidence 66532 34457789999999999999999877655444332 23445554554
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.11 E-value=1.4 Score=57.20 Aligned_cols=92 Identities=20% Similarity=0.314 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc-CceEEEEeCCCCHHHHHHHHHHhhCC--CCCeEEEEEcccc
Q 000096 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQQ--DSPFFIFLLSIRA 138 (2260)
Q Consensus 62 LELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr-GIkyvRLDGSTSqEERQeIIDrFNk~--DSei~VLLLSTRA 138 (2260)
...+.+.|..+...+.++|||+.+..+|+.+..+|... ++. +.+.|. ..|.+++++|.+. ...- .+|+.+..
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~-~VL~g~~s 594 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG-SVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC-eEEEEecc
Confidence 34555555555555666899888888899988888643 333 344564 3578899877532 1111 25666788
Q ss_pred cccccCCCc--cCeeEeeCCCC
Q 000096 139 GGVGVNLQA--ADTVIIFDTDW 158 (2260)
Q Consensus 139 GGeGLNLQa--ADhVIIFDpPW 158 (2260)
..+|+|+.+ +.+||+.-+|+
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccCCCCceEEEEEEcCCC
Confidence 899999985 79999988887
No 146
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=91.09 E-value=0.29 Score=64.84 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=60.4
Q ss_pred hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCC-CChhhhhhhcccccccCCc
Q 000096 98 FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQK 176 (2260)
Q Consensus 98 krGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpP-WNParDLQAIGRAHRIGQK 176 (2260)
++||. ..|.++....|..+---|+.+.=. +|++|+..++|||+.+-..|+.-|.- .||-.|.|+.||++|.|=.
T Consensus 962 yRGiG--~HHaglNr~yR~~VEvLFR~g~L~---VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD 1036 (1330)
T KOG0949|consen 962 YRGIG--VHHAGLNRKYRSLVEVLFRQGHLQ---VLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFD 1036 (1330)
T ss_pred Hhccc--ccccccchHHHHHHHHHhhcCceE---EEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccc
Confidence 44544 367889999999988899775433 68899999999999976666666654 7999999999999999954
Q ss_pred Cc
Q 000096 177 RD 178 (2260)
Q Consensus 177 KE 178 (2260)
.-
T Consensus 1037 ~l 1038 (1330)
T KOG0949|consen 1037 TL 1038 (1330)
T ss_pred cc
Confidence 33
No 147
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.08 E-value=1.2 Score=58.43 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=58.3
Q ss_pred HHHhhCCCCCeEEEEEcccccccccCCCccCee--------EeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCH
Q 000096 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV--------IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190 (2260)
Q Consensus 119 IDrFNk~DSei~VLLLSTRAGGeGLNLQaADhV--------IIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTV 190 (2260)
.++|-+ ....|.||+ .|++-||.||.-..| |-+++||...+-+|-+||.||-.|-..-.+..||+.=-=
T Consensus 850 KqrFM~--GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAG 926 (1300)
T KOG1513|consen 850 KQRFMD--GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAG 926 (1300)
T ss_pred Hhhhcc--ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhcc
Confidence 345633 333444554 899999999965444 558999999999999999999999877665556665554
Q ss_pred HHHHHHHHHHHHHHHH
Q 000096 191 EEQVRASAEHKLGVAN 206 (2260)
Q Consensus 191 EEKIyERArrKLdLAe 206 (2260)
|.+......+++.-..
T Consensus 927 ErRFAS~VAKRLESLG 942 (1300)
T KOG1513|consen 927 ERRFASIVAKRLESLG 942 (1300)
T ss_pred chHHHHHHHHHHHhhc
Confidence 5555444444444433
No 148
>COG4889 Predicted helicase [General function prediction only]
Probab=89.78 E-value=0.65 Score=61.13 Aligned_cols=85 Identities=22% Similarity=0.190 Sum_probs=64.8
Q ss_pred ceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCc-E
Q 000096 101 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD-V 179 (2260)
Q Consensus 101 IkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKE-V 179 (2260)
+.+--+||.|..-+|.+++..-|.-.+..+-+|-..|+..+|+++..-|-|||||+--.-....|++||+-|---.|+ -
T Consensus 500 iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yG 579 (1518)
T COG4889 500 ISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYG 579 (1518)
T ss_pred EEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccc
Confidence 445668999999999777765544233333368899999999999999999999999888888999999999654333 4
Q ss_pred EEEEEE
Q 000096 180 LVLRFE 185 (2260)
Q Consensus 180 rVYRLI 185 (2260)
+|.--|
T Consensus 580 YIILPI 585 (1518)
T COG4889 580 YIILPI 585 (1518)
T ss_pred eEEEEe
Confidence 444443
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=89.63 E-value=2.2 Score=57.06 Aligned_cols=84 Identities=10% Similarity=0.105 Sum_probs=67.8
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCC-CCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH-TSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGS-TSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
..|+.++.+-+.++.+.|+-|||-+.+...-+.|...|...|+++-.|+.. ...++-..+|.+= +... -+-++|.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~~G--aVTIATN 497 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GRKG--AVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CCCC--cEEEecc
Confidence 579999999888889999999999999999999999999999999999886 3334445566553 3222 3678899
Q ss_pred ccccccCCC
Q 000096 138 AGGVGVNLQ 146 (2260)
Q Consensus 138 AGGeGLNLQ 146 (2260)
.+|+|-++.
T Consensus 498 MAGRGTDIk 506 (939)
T PRK12902 498 MAGRGTDII 506 (939)
T ss_pred CCCCCcCEe
Confidence 999996644
No 150
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.31 E-value=2.3 Score=55.92 Aligned_cols=97 Identities=22% Similarity=0.354 Sum_probs=73.0
Q ss_pred HHHHHHHhh--cCceEEEEeCCCCHHH--HHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCC--Ch---
Q 000096 90 DVMEDYLTF--KQYRYLRLDGHTSGGD--RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW--NP--- 160 (2260)
Q Consensus 90 DILED~Lrk--rGIkyvRLDGSTSqEE--RQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPW--NP--- 160 (2260)
+.+++.|+. -+.+++++|+.+.... -..++..|+.+... ||+-|+...-|+|+.+...|.++|.|- |-
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~Df 570 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDF 570 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCc
Confidence 344444432 3678999999886533 56789999887776 899999999999999999988876652 22
Q ss_pred -------hhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 161 -------QVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 161 -------arDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
+.+.|..||++|-+-...|.|-.+...+.
T Consensus 571 RA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 571 RASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred chHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 34569999999998777887776665554
No 151
>PHA03247 large tegument protein UL36; Provisional
Probab=89.27 E-value=1e+02 Score=46.37 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=7.5
Q ss_pred ccccCccccccc
Q 000096 537 PRRRGKKIGLVL 548 (2260)
Q Consensus 537 pRRRGkkq~~~~ 548 (2260)
|-++..|.....
T Consensus 2779 Pap~~~~~~~ap 2790 (3151)
T PHA03247 2779 PPRRLTRPAVAS 2790 (3151)
T ss_pred CCCCCCCCCCCC
Confidence 667777755544
No 152
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=88.83 E-value=1.4 Score=58.63 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=85.4
Q ss_pred HHHHHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 64 MLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 64 LLdrLLkKLk-enGhKVLIFSQfTdtLDILED~Lrk----rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
.+...+.... ....-+|||-.-...++...+.|.. ..+.++-|+|.++..+..++ |+......+-++++|..
T Consensus 246 ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNI 322 (845)
T COG1643 246 AIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccc
Confidence 3334443333 3346799999888888877777766 45788999999999888886 43333343437889999
Q ss_pred cccccCCCccCeeEeeC----CCCChhhhh-----------hhcccccccCCcCcEEEEEEEeCCCHH
Q 000096 139 GGVGVNLQAADTVIIFD----TDWNPQVDL-----------QAQARAHRIGQKRDVLVLRFETVQTVE 191 (2260)
Q Consensus 139 GGeGLNLQaADhVIIFD----pPWNParDL-----------QAIGRAHRIGQKKEVrVYRLITegTVE 191 (2260)
+-.+|++.+..+||--. .-|||..-. .|.-|++|.|.+.+-.+|||++++..+
T Consensus 323 AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 99999999999998421 123443322 233445555556688999999986555
No 153
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=88.65 E-value=21 Score=48.63 Aligned_cols=114 Identities=22% Similarity=0.179 Sum_probs=75.6
Q ss_pred HHHHHHHhhcCC-CeEEEEEcchhHHHHHHHHHhhcCc---------------------------------------eEE
Q 000096 65 LDRLLPKLKATD-HRVLFFSTMTRLLDVMEDYLTFKQY---------------------------------------RYL 104 (2260)
Q Consensus 65 LdrLLkKLkenG-hKVLIFSQfTdtLDILED~LrkrGI---------------------------------------kyv 104 (2260)
...+|..+.... -.+|||+-++.-+|...++|...++ .+.
T Consensus 555 ~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGia 634 (1248)
T KOG0947|consen 555 WLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIA 634 (1248)
T ss_pred HHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcch
Confidence 445555554333 6799999999888888888753221 134
Q ss_pred EEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCC---------CCChhhhhhhcccccccCC
Q 000096 105 RLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT---------DWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 105 RLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDp---------PWNParDLQAIGRAHRIGQ 175 (2260)
+.||+.=+--+.-+---|..+- ++ +|++|...+-|+|+.+ .+|||-.+ ..+|..|.|-.||++|.|-
T Consensus 635 VHH~GlLPivKE~VE~LFqrGl--VK-VLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGl 710 (1248)
T KOG0947|consen 635 VHHGGLLPIVKEVVELLFQRGL--VK-VLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGL 710 (1248)
T ss_pred hhcccchHHHHHHHHHHHhcCc--eE-EEeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhcccccccc
Confidence 4555554444444445564432 23 6889999999999985 44444322 4589999999999999997
Q ss_pred cCcEEEE
Q 000096 176 KRDVLVL 182 (2260)
Q Consensus 176 KKEVrVY 182 (2260)
...-+|.
T Consensus 711 D~tGTVi 717 (1248)
T KOG0947|consen 711 DETGTVI 717 (1248)
T ss_pred CcCceEE
Confidence 6654444
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=88.60 E-value=1.6 Score=57.81 Aligned_cols=112 Identities=13% Similarity=0.283 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccc
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGG 140 (2260)
+..++..|+..| ..|++|-|||....+.+++++++...+.+++.+++..+.. -++.| .+++| |+-|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~----dv~~W----~~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE----DVESW----KKYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc----ccccc----cceeE-EEEeceEE
Confidence 445666666654 5789999999999999999999999999999998876655 23444 23554 56667777
Q ss_pred cccCCC--ccCeeEee--CCCCChhh--hhhhcccccccCCcCcEEEEE
Q 000096 141 VGVNLQ--AADTVIIF--DTDWNPQV--DLQAQARAHRIGQKRDVLVLR 183 (2260)
Q Consensus 141 eGLNLQ--aADhVIIF--DpPWNPar--DLQAIGRAHRIGQKKEVrVYR 183 (2260)
.|+++. ..|.|+.| ....-|.. ..|.+||+..+.. +++.||.
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 888876 36777776 33333543 5899999999874 4555553
No 155
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=87.23 E-value=1.9 Score=55.90 Aligned_cols=116 Identities=17% Similarity=0.209 Sum_probs=83.7
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhc----Cc----eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCC
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFK----QY----RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 145 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~Lrkr----GI----kyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNL 145 (2260)
+...-+|||=.-.+-++.+.+.|... .- -++-++|.++.++..++ |......++=++++|..+...|++
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEe
Confidence 34467999998888777777777433 11 24678999998887776 544454566789999999999999
Q ss_pred CccCeeEee----CCCCChhh-----------hhhhcccccccCCcCcEEEEEEEeCCCHHH
Q 000096 146 QAADTVIIF----DTDWNPQV-----------DLQAQARAHRIGQKRDVLVLRFETVQTVEE 192 (2260)
Q Consensus 146 QaADhVIIF----DpPWNPar-----------DLQAIGRAHRIGQKKEVrVYRLITegTVEE 192 (2260)
.+.-+||=- -..|||.. -.||.-|++|.|.+.+..+|||+++.-.++
T Consensus 333 ~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 333 DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK 394 (674)
T ss_pred cceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh
Confidence 998888732 12345522 236777777777788999999999876643
No 156
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.97 E-value=1.5 Score=56.92 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=83.4
Q ss_pred CeEEEEEcchh----HHHHHHHHHhh------cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCC
Q 000096 77 HRVLFFSTMTR----LLDVMEDYLTF------KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ 146 (2260)
Q Consensus 77 hKVLIFSQfTd----tLDILED~Lrk------rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQ 146 (2260)
.-+|||-.-.+ +.++|...|.. .++.++-|...++.+...++ |+......+-+|++|..+...|++.
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeec
Confidence 56888865444 56667666632 26788889999987766665 5545556667889999999999999
Q ss_pred ccCeeEeeCC----CCChhhh-----------hhhcccccccCCcCcEEEEEEEeCCCHHHHHH
Q 000096 147 AADTVIIFDT----DWNPQVD-----------LQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 195 (2260)
Q Consensus 147 aADhVIIFDp----PWNParD-----------LQAIGRAHRIGQKKEVrVYRLITegTVEEKIy 195 (2260)
+..+||-... -|||..= .+|.-|++|.|.+.+-.+|||+|+++....++
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 9998885332 2454322 35556677777777999999999988777655
No 157
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=86.39 E-value=13 Score=49.80 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=97.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
.-.|+.++.+-+......|+.|||.+.+...-++|...|+..||+..+|.-.-. .|..-|-.+ ++... .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 457999999999999999999999999999999999999999999988888765 444444444 22222 3677899
Q ss_pred ccccccCCCccC-----------eeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000096 138 AGGVGVNLQAAD-----------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 198 (2260)
Q Consensus 138 AGGeGLNLQaAD-----------hVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERA 198 (2260)
-+|+|-++.-.. +||=-+.+-+-..+.|--||++|.|-.-.-+.| =|+|..++++.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~-----lSleD~L~r~F 552 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFY-----LSLEDDLMRRF 552 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhh-----hhhHHHHHHHh
Confidence 999999988433 455555565556667888999999954433333 35666665553
No 158
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=85.46 E-value=2.9 Score=56.13 Aligned_cols=129 Identities=15% Similarity=0.217 Sum_probs=92.9
Q ss_pred cccHHHHHHHHHHHhhcCC--CeEEEEEcchhHHHHHHHHHhh----c---CceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 58 LCGKLEMLDRLLPKLKATD--HRVLFFSTMTRLLDVMEDYLTF----K---QYRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenG--hKVLIFSQfTdtLDILED~Lrk----r---GIkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
..-.+.++..++..+.+.. ..+|||-.-..-+..+...|.. . .+-+..+|+.++..+.+.+ |+.....
T Consensus 393 ~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g 469 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKG 469 (924)
T ss_pred ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCC
Confidence 3356788888888776543 6899999888888777777742 2 3667888999998777777 5555555
Q ss_pred eEEEEEcccccccccCCCccCeeEe--------eCCCCCh----------hhhhhhcccccccCCcCcEEEEEEEeCCCH
Q 000096 129 FFIFLLSIRAGGVGVNLQAADTVII--------FDTDWNP----------QVDLQAQARAHRIGQKRDVLVLRFETVQTV 190 (2260)
Q Consensus 129 i~VLLLSTRAGGeGLNLQaADhVII--------FDpPWNP----------arDLQAIGRAHRIGQKKEVrVYRLITegTV 190 (2260)
++=+|++|..+...|++.++-+||- ||+.-|- +.-.||.||++|. ..-.+|+|++..-.
T Consensus 470 ~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 470 TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRY 546 (924)
T ss_pred cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhh
Confidence 6668999999999999998887774 3433222 2234777777664 67789999987654
Q ss_pred HH
Q 000096 191 EE 192 (2260)
Q Consensus 191 EE 192 (2260)
+.
T Consensus 547 ~~ 548 (924)
T KOG0920|consen 547 EK 548 (924)
T ss_pred hh
Confidence 44
No 159
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=84.76 E-value=1.3 Score=59.09 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=51.9
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe---eCCCC-ChhhhhhhcccccccCC
Q 000096 102 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII---FDTDW-NPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 102 kyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII---FDpPW-NParDLQAIGRAHRIGQ 175 (2260)
.+.+.|.+++.++|..+-..|+.+. .+ +|++|.....|.||..-.++|= |..+. .-..|.|.+||++|.|=
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g~--i~-vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREGN--IF-VLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred cceecccccccchHHHHHHHHHhcC--eE-EEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 4566778888899998888996543 34 5667777999999996555543 23333 34578999999999884
No 160
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.76 E-value=6.1 Score=49.93 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=71.8
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk-rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
.-|||-+....++......|.++||.+........+.+.|+. .+..+..+||.++..+|.+...+...++.. |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 458999999998988888899999999999888877777754 477889999999999998887766444433 4555
Q ss_pred ccccccccCCCccCeeEeeC
Q 000096 136 IRAGGVGVNLQAADTVIIFD 155 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFD 155 (2260)
|+.+- =+-+.+...||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 65432 24466677777655
No 161
>PHA03247 large tegument protein UL36; Provisional
Probab=84.42 E-value=2.5e+02 Score=42.74 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 000096 188 QTVEEQVRASAEHK 201 (2260)
Q Consensus 188 gTVEEKIyERArrK 201 (2260)
|.||...+..|..+
T Consensus 2368 NpIENACL~~QLe~ 2381 (3151)
T PHA03247 2368 NPIENACLAAQLPA 2381 (3151)
T ss_pred chHHHHHHHHHHHH
Confidence 34444444444333
No 162
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.27 E-value=7.8 Score=50.56 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=72.5
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk-rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
.-|||......++......|.++||.+........+.+.|+. .+..+..++|+++..+|.+...+...+... +++.
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 358999998888877777789999999999988877777754 478899999999999998888777555443 4555
Q ss_pred ccccccccCCCccCeeEeeCC
Q 000096 136 IRAGGVGVNLQAADTVIIFDT 156 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDp 156 (2260)
|+.+- =+.+.+...||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 55332 245667777777653
No 163
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.00 E-value=3.3 Score=53.88 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=71.6
Q ss_pred CCCeEEEEEcchhHHHHHHHHH----hhc-----CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCC
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYL----TFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 145 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~L----rkr-----GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNL 145 (2260)
...-+|||-.-.+-+...++.| +.. .+-++-|+..++.+...++ |......++-++|.|..+-..|++
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceee
Confidence 3467899987666544444443 322 3557888999998877776 433344556678899999999999
Q ss_pred CccCeeEeeCCC------CChh--------------hhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 146 QAADTVIIFDTD------WNPQ--------------VDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 146 QaADhVIIFDpP------WNPa--------------rDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
.+..+|| |+- +||. .-.||.||++|.| +-.+|||++.-
T Consensus 549 dgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~ 606 (902)
T KOG0923|consen 549 DGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAW 606 (902)
T ss_pred cCeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechh
Confidence 8888876 443 3443 2247777777766 66789998843
No 164
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=80.65 E-value=7 Score=51.02 Aligned_cols=86 Identities=7% Similarity=0.084 Sum_probs=54.7
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCC-CCeEEEEEcccccccccCC--------
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD-SPFFIFLLSIRAGGVGVNL-------- 145 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~D-Sei~VLLLSTRAGGeGLNL-------- 145 (2260)
.|+-.+.|+. ...+..+.+.|...---.+.+.|..+ .|..++++|.... ....-+|+.|....+|+|+
T Consensus 470 ~G~~lvLfTS-~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 470 QGGTLVLTTA-FSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred CCCEEEEech-HHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3444555555 45555566666432112244556433 5788999997640 0112378889999999999
Q ss_pred --CccCeeEeeCCCCChhhh
Q 000096 146 --QAADTVIIFDTDWNPQVD 163 (2260)
Q Consensus 146 --QaADhVIIFDpPWNParD 163 (2260)
....+|||.-+|+-|..-
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp 566 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRS 566 (636)
T ss_pred CCCcccEEEEEeCCCCcCCh
Confidence 358999999999877433
No 165
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=77.24 E-value=13 Score=40.02 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=36.4
Q ss_pred EEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCc--cCeeEeeCCCC
Q 000096 103 YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--ADTVIIFDTDW 158 (2260)
Q Consensus 103 yvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQa--ADhVIIFDpPW 158 (2260)
.+.+.|. ...+...++++|...... .+|+++....+|+|+.. +..||+.-.||
T Consensus 25 ~i~~e~~-~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGE-DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCC-ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3344443 334578899999764322 35666666999999995 67899988876
No 166
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=76.54 E-value=14 Score=48.25 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=68.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHH----HHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLD----VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLD----ILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
-|||-....-.+......|.+++|.+.....+. .+..+|...++++..++|+++..+|..++.....+.. .|++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~--~IvV 369 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA--DIVI 369 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC--CEEE
Confidence 589987655444344457889999999887655 4445555568999999999999999999998865544 4555
Q ss_pred EcccccccccCCCccCeeEeeC
Q 000096 134 LSIRAGGVGVNLQAADTVIIFD 155 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVIIFD 155 (2260)
.+.......+.+.....||+=+
T Consensus 370 gT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred chHHHhcccchhcccceEEEec
Confidence 5444455566777787777633
No 167
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=75.79 E-value=9.6 Score=40.93 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcccc--cccccCCCc--cCeeEeeCCCC
Q 000096 114 DRGALIDKFNQQDSPFFIFLLSIRA--GGVGVNLQA--ADTVIIFDTDW 158 (2260)
Q Consensus 114 ERQeIIDrFNk~DSei~VLLLSTRA--GGeGLNLQa--ADhVIIFDpPW 158 (2260)
+...++++|+........+|+++.. ..+||||.. +..||+.-.|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 5578899997643210124444444 789999985 78999988886
No 168
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=74.56 E-value=26 Score=38.85 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=37.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 96 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L 96 (2260)
..++|+.++.+|+.+....|+|++|++.....+..|-++|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 5578999999999999999999999999999999999999
No 169
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=73.17 E-value=14 Score=50.53 Aligned_cols=88 Identities=14% Similarity=0.233 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcc---hhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTM---TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQf---TdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
.-++.+.+|++++ |.-.|||.+. .+.++.|.++|+..|++...++.. +.+.++.|..+.-. +++...
T Consensus 322 ~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~Geid--vLVGvA 391 (1187)
T COG1110 322 ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVD--VLVGVA 391 (1187)
T ss_pred ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCcee--EEEEec
Confidence 4455566666655 5578999999 889999999999999999888763 36789999665544 444322
Q ss_pred ---cccccccCCC-ccCeeEeeCCC
Q 000096 137 ---RAGGVGVNLQ-AADTVIIFDTD 157 (2260)
Q Consensus 137 ---RAGGeGLNLQ-aADhVIIFDpP 157 (2260)
.+.-+||||. ...++|||..|
T Consensus 392 syYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 392 SYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccccceeecCCchhheeEEEEecCC
Confidence 3355999999 59999999988
No 170
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=70.14 E-value=3.7 Score=54.31 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=49.1
Q ss_pred HHHhhCCCCCeEEEEEcccccccccCCCccCeeEe--------eC---------CCC-ChhhhhhhcccccccCCcCcEE
Q 000096 119 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII--------FD---------TDW-NPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 119 IDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII--------FD---------pPW-NParDLQAIGRAHRIGQKKEVr 180 (2260)
+.=|......++..+++|.++-..|++.+..|||= || -.| .-+.-.||.||++|+| .-+
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCc
Confidence 34454555567888999999999999999999983 33 344 2334458888888887 678
Q ss_pred EEEEEeC
Q 000096 181 VLRFETV 187 (2260)
Q Consensus 181 VYRLITe 187 (2260)
+|||+..
T Consensus 697 cYRLYSS 703 (1172)
T KOG0926|consen 697 CYRLYSS 703 (1172)
T ss_pred eeehhhh
Confidence 9999864
No 171
>PRK14873 primosome assembly protein PriA; Provisional
Probab=69.95 E-value=27 Score=46.13 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=71.3
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc-C-ceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-Q-YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr-G-IkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
-|+|-+.+.+++.+....|+.+||...-......+...|+.+ + ..+..+|+.++..+|.+...+...+... +++-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 489999999999999999999999998888888888888543 4 6789999999999999998888655443 4556
Q ss_pred ccccccccCCCccCeeEeeC
Q 000096 136 IRAGGVGVNLQAADTVIIFD 155 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFD 155 (2260)
|+.+-. +-+.+-..||+.|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 666532 2333444555543
No 172
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=68.98 E-value=13 Score=49.83 Aligned_cols=96 Identities=22% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHHHHhccCCCchhhHHHHHHHHHHHh-----cCCcccccccccccccCCcccc----ccccccccHHHHHHHHHHH-h
Q 000096 3 RVEENLGSIGNSKGRSVHNSVMELRNIC-----NHPYLSQLHAEEVDTLIPKHYL----PPIVRLCGKLEMLDRLLPK-L 72 (2260)
Q Consensus 3 RVEKiLgSiGnsKgRSLfNiLMQLRKIC-----NHPYLfqlSeEEVd~LlPe~~l----~~LIRsSGKLELLdrLLkK-L 72 (2260)
-+|..|..+-.....+++.++..||..- +.+||+-.....+........+ .......+|+..|.++|.+ .
T Consensus 286 ~LR~Ll~~L~~~D~vsfl~~l~tlr~~~~~~s~~s~Wl~ldss~~i~~~a~~rv~~~~~e~~lE~~pKw~~Ltdil~~e~ 365 (892)
T KOG0442|consen 286 TLRILLKSLVSYDAVSFLKILKTLRNSEIVSSIPSGWLLLDSSNKIFEEARKRVYSLENESELEECPKWEVLTDILFKEI 365 (892)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhhhhccCCCCceecchHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHhhh
Confidence 3455555555666666666666666432 1156653322222111111111 2356678999999999933 2
Q ss_pred hcC---------CCeEEEEEcchhHHHHHHHHHhh
Q 000096 73 KAT---------DHRVLFFSTMTRLLDVMEDYLTF 98 (2260)
Q Consensus 73 ken---------GhKVLIFSQfTdtLDILED~Lrk 98 (2260)
... ...|||-|....++..|.++|..
T Consensus 366 ~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 366 EHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred hhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 211 23699999999999999998864
No 173
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=67.48 E-value=25 Score=37.75 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc----CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK----QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 62 LELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr----GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
..++.+|+.+....|+|++|+|.....+..|-+.|=.. -++..+ .|.-. .....| +|+..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~--------------~~~~PV-~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPP--------------AARQPV-LITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SS--------------TT--SE-EEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCC--------------CCCCeE-EEecC
Confidence 58999999999999999999999999999999999322 223332 22211 111234 44433
Q ss_pred ccccccCCCccCeeEeeCCCC
Q 000096 138 AGGVGVNLQAADTVIIFDTDW 158 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPW 158 (2260)
... -....++.+||++..+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 221 2344599999999888
No 174
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=67.46 E-value=19 Score=47.98 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=65.5
Q ss_pred ccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHh-hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lr-krGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
.+.-|||.+.+.+++.+..+.|+.+||-..-.....-+...|+ +.|.++..+|.+++..+|.+.-.+...+. .+|+|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~--~~vVI 301 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGE--ARVVI 301 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCC--ceEEE
Confidence 4566999999999999999999999999988887776666664 44789999999999999999988885554 44544
Q ss_pred Eccccc
Q 000096 134 LSIRAG 139 (2260)
Q Consensus 134 LSTRAG 139 (2260)
-|+.+
T Consensus 302 -GtRSA 306 (730)
T COG1198 302 -GTRSA 306 (730)
T ss_pred -Eechh
Confidence 44443
No 175
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=64.54 E-value=33 Score=44.55 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=66.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHH----HHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME----DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILE----D~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
-|||-....-.+......|.+++|.+.....+.-+. .+|...|+++..++|+++..+|..+++....+.. .|++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~--~IiV 343 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI--HLVV 343 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC--CEEE
Confidence 588987654333333456889999998887655444 4444558999999999999999999988855543 4555
Q ss_pred EcccccccccCCCccCeeEee
Q 000096 134 LSIRAGGVGVNLQAADTVIIF 154 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVIIF 154 (2260)
.+....-..+.+....+||+=
T Consensus 344 gT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred ecHHHHhccccccccceEEEe
Confidence 555445556677777777663
No 176
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=62.86 E-value=1.1e+02 Score=33.34 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=37.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 96 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L 96 (2260)
....++.++.+|+.+....|+||+|+|.....++.|-+.|
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~L 49 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEAL 49 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 4566999999999999999999999999999999999999
No 177
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=60.57 E-value=4.2 Score=53.25 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHhcCCccccc
Q 000096 17 RSVHNSVMELRNICNHPYLSQL 38 (2260)
Q Consensus 17 RSLfNiLMQLRKICNHPYLfql 38 (2260)
..+++++|||||+||||-||..
T Consensus 835 ~E~~~~vmQlrKVCNHPdLFer 856 (1185)
T KOG0388|consen 835 MEMENLVMQLRKVCNHPDLFER 856 (1185)
T ss_pred HHHHHHHHHHHHhcCChHHHhh
Confidence 4567899999999999999864
No 178
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=59.71 E-value=27 Score=48.22 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=60.2
Q ss_pred EEEEcchhHHHHHHHHHhh-----cCceEEEEeCCCCHHHHHHHHHH---------------------hhCC--CCCeEE
Q 000096 80 LFFSTMTRLLDVMEDYLTF-----KQYRYLRLDGHTSGGDRGALIDK---------------------FNQQ--DSPFFI 131 (2260)
Q Consensus 80 LIFSQfTdtLDILED~Lrk-----rGIkyvRLDGSTSqEERQeIIDr---------------------FNk~--DSei~V 131 (2260)
|.|.+-...++.-...+.. ..+.++.+|.......|..+-++ |-+. .....+
T Consensus 761 iR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~ 840 (1110)
T TIGR02562 761 IRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLF 840 (1110)
T ss_pred EEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCe
Confidence 6677666665555444432 24668899998866666553322 1111 123457
Q ss_pred EEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCc
Q 000096 132 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 178 (2260)
Q Consensus 132 LLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKE 178 (2260)
++++|.+...|+++- .|.+|.-=.+ -...+|+.||++|-|+...
T Consensus 841 i~v~Tqv~E~g~D~d-fd~~~~~~~~--~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 841 IVLATPVEEVGRDHD-YDWAIADPSS--MRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred EEEEeeeEEEEeccc-CCeeeeccCc--HHHHHHHhhcccccccCCC
Confidence 899999999999964 5555442222 2347899999999997543
No 179
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=58.09 E-value=45 Score=45.60 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=69.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lr----krGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
-+||.......+-.....+.+++|.+..+..+.-..+.|+ ..++++..++|.++..++.++++.+..+. +.|++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEE
Confidence 4889987665544444567899999999987776665554 34678889999999999999999886543 45666
Q ss_pred EcccccccccCCCccCeeEe
Q 000096 134 LSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVII 153 (2260)
.+.+.....+.+....+||+
T Consensus 560 GTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred chHHHhhCCCCcccCCEEEe
Confidence 66666666677878877776
No 180
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=54.95 E-value=27 Score=46.79 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=69.6
Q ss_pred HHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhhcCce---------------------------------------EEEE
Q 000096 67 RLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYR---------------------------------------YLRL 106 (2260)
Q Consensus 67 rLLkKLk-enGhKVLIFSQfTdtLDILED~LrkrGIk---------------------------------------yvRL 106 (2260)
++++.+. .+...|||||-.+..++.+.-.+....+. +...
T Consensus 373 kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIH 452 (1041)
T KOG0948|consen 373 KIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIH 452 (1041)
T ss_pred HHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccc
Confidence 3444333 35688999999888777766555322211 2234
Q ss_pred eCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe----eCC---CC-ChhhhhhhcccccccCCcCc
Q 000096 107 DGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDT---DW-NPQVDLQAQARAHRIGQKRD 178 (2260)
Q Consensus 107 DGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII----FDp---PW-NParDLQAIGRAHRIGQKKE 178 (2260)
|++.-+--+.-+---|+.+- ++ +|..|...+-|||+.+-..|+- ||- -| ....|+|--||++|.|-...
T Consensus 453 HsGLLPIlKE~IEILFqEGL--vK-vLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~Ddr 529 (1041)
T KOG0948|consen 453 HSGLLPILKEVIEILFQEGL--VK-VLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDR 529 (1041)
T ss_pred cccchHHHHHHHHHHHhccH--HH-HHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCC
Confidence 44544433333333453322 22 5788999999999985544443 332 23 55688999999999997555
Q ss_pred EEEEEEE
Q 000096 179 VLVLRFE 185 (2260)
Q Consensus 179 VrVYRLI 185 (2260)
-.|.-+|
T Consensus 530 GivIlmi 536 (1041)
T KOG0948|consen 530 GIVILMI 536 (1041)
T ss_pred ceEEEEe
Confidence 4444333
No 181
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=51.08 E-value=2.3 Score=54.35 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccccc
Q 000096 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 141 (2260)
Q Consensus 62 LELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGe 141 (2260)
.+.+.+++.... +++|+.+..+..+|...+ ..++.+...+...++..|... +....+.+
T Consensus 433 ~~~~~~~~~~~~-----~~~~~v~itty~~l~~~~--------~~~~~l~~~~~~~~v~DEa~~--------ikn~~s~~ 491 (866)
T COG0553 433 REALRDLLKLHL-----VIIFDVVITTYELLRRFL--------VDHGGLKKIEWDRVVLDEAHR--------IKNDQSSE 491 (866)
T ss_pred HHHHHHHhhhcc-----cceeeEEechHHHHHHhh--------hhHHHHhhceeeeeehhhHHH--------HhhhhhHH
Confidence 555666655332 888888888888888754 111112222222233333111 45566778
Q ss_pred ccCCCccCeeEeeCCCCChhhhhhhcccccccCCc
Q 000096 142 GVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 176 (2260)
Q Consensus 142 GLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQK 176 (2260)
+.+|..+...+.|+++|+| .+|+++|.+++++.
T Consensus 492 ~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~~ 524 (866)
T COG0553 492 GKALQFLKALNRLDLTGTP--LENRLGELWSLLQE 524 (866)
T ss_pred HHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHHH
Confidence 8999999999999999999 69999999999986
No 182
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=50.88 E-value=76 Score=30.31 Aligned_cols=59 Identities=19% Similarity=0.043 Sum_probs=42.2
Q ss_pred cccHHHHHHHHHHHhhc--CCCeEEEEEcchhHHHHHHHHHhhcC---ceEEEEeCCCCHHHHH
Q 000096 58 LCGKLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRG 116 (2260)
Q Consensus 58 sSGKLELLdrLLkKLke--nGhKVLIFSQfTdtLDILED~LrkrG---IkyvRLDGSTSqEERQ 116 (2260)
-+||-..+..++..+.. ...++||++........+.+.+.... +.+..+++......+.
T Consensus 10 G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 10 GSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 47898887777766654 45899999999988888777775443 7777777775544333
No 183
>PRK10689 transcription-repair coupling factor; Provisional
Probab=48.67 E-value=89 Score=43.85 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=67.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lr----krGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
-+||.......+......+.++||.+..+..+.-+.+.|. ..++++..++|..+..++.+++..+..+. +.|++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEE
Confidence 5899987665544445578899999999887665555553 33577888999999999999998885443 44666
Q ss_pred EcccccccccCCCccCeeEe
Q 000096 134 LSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVII 153 (2260)
.+.+.....+.+.....+|+
T Consensus 709 gTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEE
Confidence 66665555667777777776
No 184
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=48.41 E-value=91 Score=36.56 Aligned_cols=85 Identities=7% Similarity=0.014 Sum_probs=59.2
Q ss_pred EEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCC
Q 000096 80 LFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWN 159 (2260)
Q Consensus 80 LIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWN 159 (2260)
...-.|.+..+.|...+.. ++.+..+.++.+... ++-.+..+....+|++--...++||+|.+-.+.+++=..-+
T Consensus 91 ~~~~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~ 165 (239)
T PF10593_consen 91 PDPPSWEEIKPELPKAISD-GIEVVVVNSGSSDDS----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQ 165 (239)
T ss_pred CCCcCHHHHHHHHHHHHhc-CceEEEEeCCCcccc----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCch
Confidence 3444566778888888876 899999997665433 32222222224788999999999999998877777766656
Q ss_pred hhhhhhhcccc
Q 000096 160 PQVDLQAQARA 170 (2260)
Q Consensus 160 ParDLQAIGRA 170 (2260)
..+++|+ ||.
T Consensus 166 ~DTL~Qm-gRw 175 (239)
T PF10593_consen 166 YDTLMQM-GRW 175 (239)
T ss_pred HHHHHHH-hhc
Confidence 6666665 665
No 185
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=47.73 E-value=2e+02 Score=31.03 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=53.8
Q ss_pred ccccHHHH-HHHHHHHhhc----CCCeEEEEEcchhHHHHH----HHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCC
Q 000096 57 RLCGKLEM-LDRLLPKLKA----TDHRVLFFSTMTRLLDVM----EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLke----nGhKVLIFSQfTdtLDIL----ED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DS 127 (2260)
.-+||-.. +..++..+.. .+.|+||.+.....+.-+ ..++...++.+..++|+....++...+. .
T Consensus 45 TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 118 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------R 118 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------C
Confidence 45788543 5555555543 356899999887765544 4444455788899999988655543332 2
Q ss_pred CeEEEEEccccc-----ccccCCCccCeeEe
Q 000096 128 PFFIFLLSIRAG-----GVGVNLQAADTVII 153 (2260)
Q Consensus 128 ei~VLLLSTRAG-----GeGLNLQaADhVII 153 (2260)
.+.|++.+.... ..-+++...+.+|+
T Consensus 119 ~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 119 GPHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred CCCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 344556554321 11255666666554
No 186
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=43.02 E-value=1e+02 Score=30.51 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=35.7
Q ss_pred CCCeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHH
Q 000096 75 TDHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 121 (2260)
Q Consensus 75 nGhKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDr 121 (2260)
+.++|+||+. +......+.++|+..++.|..++=....+.|..+.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 3579999987 5668889999999999999888855555555555544
No 187
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=42.46 E-value=1.6e+02 Score=29.96 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=38.0
Q ss_pred CCCeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhh
Q 000096 75 TDHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 75 nGhKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
..++|+||+. +.-.+..+.++|+..|+.|..++=....+.|..+.+..+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg 64 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN 64 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC
Confidence 3579999975 466788999999999999998876556667777666653
No 188
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=41.18 E-value=1.1e+02 Score=34.17 Aligned_cols=39 Identities=21% Similarity=0.042 Sum_probs=22.5
Q ss_pred CCccCeeEeeCCCCChh------hhhhhcccccccCCcCcEEEEE
Q 000096 145 LQAADTVIIFDTDWNPQ------VDLQAQARAHRIGQKRDVLVLR 183 (2260)
Q Consensus 145 LQaADhVIIFDpPWNPa------rDLQAIGRAHRIGQKKEVrVYR 183 (2260)
-+.||.||+++.++... ...+-.---+|.|+...++.++
T Consensus 196 ~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g~~~l~~ 240 (242)
T cd00984 196 EQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTGTVELRF 240 (242)
T ss_pred ccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCeeEEEEe
Confidence 45799999998776211 1122222336777776666553
No 189
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.95 E-value=48 Score=43.21 Aligned_cols=107 Identities=13% Similarity=0.223 Sum_probs=77.9
Q ss_pred ccHHHH-HHHHHHHhhcCC-CeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 59 CGKLEM-LDRLLPKLKATD-HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 59 SGKLEL-LdrLLkKLkenG-hKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
..++.+ +..||..+.... .-+|||-..--..-.+..+|+...+.|..|+--++..+-.++-+-|.++. ..++|.+-
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr--~~vlLyTE 610 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGR--KSVLLYTE 610 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcC--ceEEEEeh
Confidence 345554 345667776544 55788876555556678888888999999988888777777788886654 44677776
Q ss_pred cccc-cccCCCccCeeEeeCCCCChhhhhhhc
Q 000096 137 RAGG-VGVNLQAADTVIIFDTDWNPQVDLQAQ 167 (2260)
Q Consensus 137 RAGG-eGLNLQaADhVIIFDpPWNParDLQAI 167 (2260)
|+.= +-..+.+...||+|.+|-||+-|---+
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~FYsEii 642 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHFYSEII 642 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHHHHHHH
Confidence 6643 456688899999999999999886543
No 190
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=37.37 E-value=2.2e+02 Score=34.83 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=49.4
Q ss_pred hcCCCeEEEEEcchh------HHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCC
Q 000096 73 KATDHRVLFFSTMTR------LLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ 146 (2260)
Q Consensus 73 kenGhKVLIFSQfTd------tLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQ 146 (2260)
..+++|+||..+-.+ ++..+.++|+-++++++.|---+..+.-+--+.+|-+ .|.
T Consensus 69 ~~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt~~E~~qwY~qRy~~-------------------~lP 129 (270)
T COG2326 69 AETGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPTDRERGQWYFQRYVA-------------------HLP 129 (270)
T ss_pred HhcCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCChHhhccHHHHHHHH-------------------hCC
Confidence 467899888887776 5778888888888888888766655555555666622 356
Q ss_pred ccCeeEeeCCCC
Q 000096 147 AADTVIIFDTDW 158 (2260)
Q Consensus 147 aADhVIIFDpPW 158 (2260)
.+-.+++||-.|
T Consensus 130 a~GeiviFdRSw 141 (270)
T COG2326 130 AAGEIVIFDRSW 141 (270)
T ss_pred CCCeEEEechhh
Confidence 677899999998
No 191
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=33.16 E-value=18 Score=26.29 Aligned_cols=11 Identities=64% Similarity=1.126 Sum_probs=4.1
Q ss_pred CCCCCCCCCCC
Q 000096 430 KRGRGRPRRAD 440 (2260)
Q Consensus 430 kRgRGRprr~d 440 (2260)
+|+||||++..
T Consensus 1 ~r~RGRP~k~~ 11 (13)
T PF02178_consen 1 KRKRGRPRKNA 11 (13)
T ss_dssp S--SS--TT--
T ss_pred CCcCCCCcccc
Confidence 58899998753
No 192
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=32.41 E-value=2e+02 Score=38.64 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=65.3
Q ss_pred ccHHHH-HHHHHHHhhcCCCeEEEEEcch----hHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 59 CGKLEM-LDRLLPKLKATDHRVLFFSTMT----RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 59 SGKLEL-LdrLLkKLkenGhKVLIFSQfT----dtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
|||--. +..+|. ....|.++.+....- +..+-+..+|...|+.+..+.|+++...|.+++++-..+... +++
T Consensus 294 SGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~--ivV 370 (677)
T COG1200 294 SGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID--IVV 370 (677)
T ss_pred CCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC--EEE
Confidence 777643 444444 356788888877643 245667778888899999999999999999999998665554 444
Q ss_pred EcccccccccCCCccCeeEe
Q 000096 134 LSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVII 153 (2260)
-+-...-..+++++.-.||+
T Consensus 371 GTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 371 GTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EcchhhhcceeecceeEEEE
Confidence 44333556777777777766
No 193
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=31.73 E-value=2.3e+02 Score=26.25 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=40.3
Q ss_pred eEEEEE-cchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 78 RVLFFS-TMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 78 KVLIFS-QfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
|+.||+ .+...+.....+|+..++.|..++-....+.++++++.++.. ..+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~-~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGR-RTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCC-CccCEEEEC
Confidence 467776 455578889999999999999998887777777777766432 134444544
No 194
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=31.28 E-value=3.2e+02 Score=34.42 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=90.2
Q ss_pred HHhhcCCCeEEE--EEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCc
Q 000096 70 PKLKATDHRVLF--FSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 147 (2260)
Q Consensus 70 kKLkenGhKVLI--FSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQa 147 (2260)
..+...++|+.+ -.||...++.+.++|+..|+.+....|.+.. + ... .+|.++-..-.| ..
T Consensus 116 ~~l~~~~r~I~li~t~q~~~~l~~~k~~L~~~g~~v~i~~~~~r~---------~--~~g---qVLGC~~~~~~~---~~ 178 (347)
T COG1736 116 RELKKGSRRIGLITTAQHVHLLEEVKEILEGRGYEVVIGRGQTRP---------A--YPG---QVLGCNFSVLEG---VD 178 (347)
T ss_pred HhhccCCceEEEEecccchhHHHHHHHHhhcCCeEEEEeCCCCcc---------c--Ccc---eeeccccccCCc---cc
Confidence 333333455544 4689999999999999999977777666431 1 112 256666666666 44
Q ss_pred cCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCC--HHHHHHHHHHHHHHHHHhhhcCCccCCCC---CHHH
Q 000096 148 ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT--VEEQVRASAEHKLGVANQSITAGFFDNNT---SAED 222 (2260)
Q Consensus 148 ADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegT--VEEKIyERArrKLdLAekVIqaG~FDnks---SaEE 222 (2260)
+|.+++.... .-|..|+..| +.++|..|..+...- ++......++++...+.+.++++.|..-. ..+.
T Consensus 179 ~d~~l~vg~G-----~FH~lg~~i~--~~~~v~~~dP~s~~~~~~~~~~~~~l~~R~~~i~~a~~a~~~giiv~tk~gQ~ 251 (347)
T COG1736 179 ADAVLYVGSG-----RFHPLGLAIR--TEKPVFAIDPYSGKVREEDPEADRFLRKRYAAISKALDAKSFGIIVSTKGGQR 251 (347)
T ss_pred cceEEEEcCC-----ccChhhcccc--cCCcEEEEcCCCCceeecchhhhHHHHHHHHHHHHHhcCCeEEEEEecccccC
Confidence 8888887665 2577888888 778898888876543 23334667777777888888887664322 2233
Q ss_pred HHHHHHHHHHH
Q 000096 223 RREYLESLLRE 233 (2260)
Q Consensus 223 rrELLESLLre 233 (2260)
+.+.++.|.+.
T Consensus 252 r~~~~~~l~k~ 262 (347)
T COG1736 252 RLEVARELVKL 262 (347)
T ss_pred cHHHHHHHHHH
Confidence 44444544443
No 195
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=30.97 E-value=29 Score=29.37 Aligned_cols=14 Identities=64% Similarity=1.054 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCC
Q 000096 430 KRGRGRPRRADKSP 443 (2260)
Q Consensus 430 kRgRGRprr~d~~~ 443 (2260)
+|+|||||......
T Consensus 1 kRkRGRPrK~~~~~ 14 (26)
T smart00384 1 KRKRGRPRKAPKDX 14 (26)
T ss_pred CCCCCCCCCCCCcc
Confidence 58999999875543
No 196
>PRK10824 glutaredoxin-4; Provisional
Probab=30.96 E-value=2e+02 Score=30.92 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=41.3
Q ss_pred CCeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccc
Q 000096 76 DHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140 (2260)
Q Consensus 76 GhKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGG 140 (2260)
.++|+||+. +.-......+.|...++.|..++=....+.|. .+.++.....-.+||+=-.-.||
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcC
Confidence 589999997 56688889999988888776665444444444 45555333344456664444444
No 197
>PRK13766 Hef nuclease; Provisional
Probab=30.95 E-value=4.7e+02 Score=34.83 Aligned_cols=94 Identities=14% Similarity=0.211 Sum_probs=57.8
Q ss_pred ccccHHHHHHHHHHH-hhcCCCeEEEEEcchhHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEE
Q 000096 57 RLCGKLEMLDRLLPK-LKATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 131 (2260)
Q Consensus 57 RsSGKLELLdrLLkK-LkenGhKVLIFSQfTdtLDILED~Lrk----rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~V 131 (2260)
.-+||.....-++.. +...+.++||.+.....+....++|+. .+..+..++|.++..+|..+... ..|
T Consensus 38 tG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-------~~i 110 (773)
T PRK13766 38 TGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-------AKV 110 (773)
T ss_pred CCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-------CCE
Confidence 347898743333332 234578999999987777555555533 23478889999998887655432 236
Q ss_pred EEEcccccc-----cccCCCccCeeEeeCCC
Q 000096 132 FLLSIRAGG-----VGVNLQAADTVIIFDTD 157 (2260)
Q Consensus 132 LLLSTRAGG-----eGLNLQaADhVIIFDpP 157 (2260)
++.+.+..- .-+++...+.||+-+-+
T Consensus 111 iv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 111 IVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 666655432 23455667777765544
No 198
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=29.39 E-value=18 Score=35.81 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.0
Q ss_pred cccccCCccccccccccCCCC
Q 000096 339 TQHYGRGKRAREVRSYEEQWT 359 (2260)
Q Consensus 339 ~q~yGRG~R~Rk~V~Y~DglT 359 (2260)
...+|+|+|.||.|+|.++-+
T Consensus 43 ~~~LGKGKR~RKqV~y~~~~~ 63 (66)
T PF06465_consen 43 EKALGKGKRSRKQVNYAEEDD 63 (66)
T ss_pred HHHhccccccccccccccccc
Confidence 457899999999999998754
No 199
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=28.99 E-value=1.2e+02 Score=29.25 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=31.2
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCC
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTS 111 (2260)
..+.++|+||..-.........|+..|+.+..++|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999998866677778888999998888999864
No 200
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.53 E-value=3.2e+02 Score=30.32 Aligned_cols=72 Identities=14% Similarity=0.292 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc--CceEEE-EeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLR-LDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 62 LELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr--GIkyvR-LDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
.+++..++.....++.|+-++-.....++.+.+.|+.. ++.++- .+|-....+...+++..|..... ++++.
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pd--iv~vg 106 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGAD--ILFVG 106 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCC--EEEEE
Confidence 35778888887778899999999999999999888654 777666 68888888887788888776554 44443
No 201
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=28.45 E-value=2.2e+02 Score=40.33 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHh----hcCceEE---EEeCCCCHHHHHHHHHHhhCCCCCe
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYL---RLDGHTSGGDRGALIDKFNQQDSPF 129 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lr----krGIkyv---RLDGSTSqEERQeIIDrFNk~DSei 129 (2260)
.-+||-.++.-++..+...+.++||.+..+..+.-+.+.|+ ..++... .++|+++..+|...++++.+++.
T Consensus 102 TGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~-- 179 (1171)
T TIGR01054 102 TGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDF-- 179 (1171)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCC--
Confidence 45899987666665555668899999999887666655553 3355443 57999999999888888865433
Q ss_pred EEEEEcc
Q 000096 130 FIFLLSI 136 (2260)
Q Consensus 130 ~VLLLST 136 (2260)
.|++.++
T Consensus 180 dIlV~Tp 186 (1171)
T TIGR01054 180 DILITTT 186 (1171)
T ss_pred CEEEECH
Confidence 3555444
No 202
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=28.40 E-value=1.3e+02 Score=27.88 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=32.3
Q ss_pred hcCCCeEEEEEcchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 000096 73 KATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTS 111 (2260)
Q Consensus 73 kenGhKVLIFSQfTdtLDILED~LrkrGIk-yvRLDGSTS 111 (2260)
...+.++||||........+..+|...|+. +..|+|++.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 345689999998877888888999999988 778899864
No 203
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.23 E-value=3.3e+02 Score=30.17 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc--CceEE-EEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYL-RLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 62 LELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr--GIkyv-RLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
.+++..++......+.++-++-.....++.+...|+.. ++.++ ..+|-....+...+++..|+.... ++++.
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pd--iv~vg 108 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPD--IVFVG 108 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCC--EEEEE
Confidence 46778888877778889999999999999999999655 77766 556767788899999999876654 44433
No 204
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=27.87 E-value=1.1e+02 Score=42.09 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccC-C-cCcEEEEEEEe
Q 000096 113 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG-Q-KRDVLVLRFET 186 (2260)
Q Consensus 113 EERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIG-Q-KKEVrVYRLIT 186 (2260)
..+.....+|...+..+.++|++ +-.=.|.+-+..+++ ++|-+.-.+..+||+.|+.|+= . +..-.|..|+-
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 45556677765556666765555 667789998877775 5677788899999999999964 4 34566666653
No 205
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.81 E-value=1.2e+02 Score=39.55 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhc--CCCeEEEEEcchhHHHHHHHHHhhc---------CceEEEEeCCCCHHHHHHHHHHhh--CCCC
Q 000096 61 KLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFK---------QYRYLRLDGHTSGGDRGALIDKFN--QQDS 127 (2260)
Q Consensus 61 KLELLdrLLkKLke--nGhKVLIFSQfTdtLDILED~Lrkr---------GIkyvRLDGSTSqEERQeIIDrFN--k~DS 127 (2260)
-++..++.+-++.. ...-+|||-...+.++...+.+... .++++-++ ..+.+++++--. ....
T Consensus 236 ylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 236 YLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGA 311 (699)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCC
Confidence 45555555555543 3456888877666554444444211 23455454 233333322111 1111
Q ss_pred CeEEEEEcccccccccCCCccCeeEeeCCC------CChhhh-----------hhhcccccccCCcCcEEEEEEEeCCCH
Q 000096 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTD------WNPQVD-----------LQAQARAHRIGQKRDVLVLRFETVQTV 190 (2260)
Q Consensus 128 ei~VLLLSTRAGGeGLNLQaADhVIIFDpP------WNParD-----------LQAIGRAHRIGQKKEVrVYRLITegTV 190 (2260)
.-+-++++|..+...|.+...-+|| |+- +||..- .||+-|.+|.|.+++-.+|||+++..+
T Consensus 312 ~~RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 389 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhh
Confidence 1234688999998888877665555 443 465432 488999999999999999999997655
Q ss_pred HH
Q 000096 191 EE 192 (2260)
Q Consensus 191 EE 192 (2260)
+.
T Consensus 390 ~~ 391 (699)
T KOG0925|consen 390 EK 391 (699)
T ss_pred hh
Confidence 43
No 206
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.64 E-value=1.4e+02 Score=37.88 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEc-chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFST-MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQ-fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
+.-+.++.-.+..+.+.|.+||+... |-.+..++...|++.|+.+..++..........++.
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~----------------- 147 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE----------------- 147 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-----------------
Confidence 44455555544444455555555544 555555666666666666655555433222111111
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHH
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 196 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyE 196 (2260)
.-..+|+++.|-||....+=|.++-|+-.... ..++..||+--=+++
T Consensus 148 ---------~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g---~~vvVDNTfatP~~q 194 (396)
T COG0626 148 ---------PNTKLVFLETPSNPLLEVPDIPAIARLAKAYG---ALVVVDNTFATPVLQ 194 (396)
T ss_pred ---------cCceEEEEeCCCCcccccccHHHHHHHHHhcC---CEEEEECCccccccc
Confidence 12457888999999888776666666554443 455666776554443
No 207
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=27.63 E-value=4.5e+02 Score=32.96 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=72.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcch------------------------hHHHHHHHHHhhcCceEEEEeCCCCH-
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMT------------------------RLLDVMEDYLTFKQYRYLRLDGHTSG- 112 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfT------------------------dtLDILED~LrkrGIkyvRLDGSTSq- 112 (2260)
-+||-.++.+++..+...+.+++.|+--. ..++.|.+.+...+..++.||.-...
T Consensus 92 G~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 92 GIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 47899999999988777778888875321 12344445555557777777763211
Q ss_pred -----------H-HHH--HHHHHhhCCCCCeEEEEEc--ccc---cccccCCCccCeeEeeCCCCChhhhhhhccc--cc
Q 000096 113 -----------G-DRG--ALIDKFNQQDSPFFIFLLS--IRA---GGVGVNLQAADTVIIFDTDWNPQVDLQAQAR--AH 171 (2260)
Q Consensus 113 -----------E-ERQ--eIIDrFNk~DSei~VLLLS--TRA---GGeGLNLQaADhVIIFDpPWNParDLQAIGR--AH 171 (2260)
. -|. ..+.+|-+ ...+.+||+. ++- +|...=-+-+|.||.|+..-+ ...|+=| -.
T Consensus 172 ~~~~~~~~g~~~qvr~~~~~L~~lak-~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~~---~~~R~Lri~Kn 247 (372)
T cd01121 172 SSELTSAPGSVSQVRECTAELMRFAK-ERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRH---SEYRILRSVKN 247 (372)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCCC---CcEEEEEEEeC
Confidence 1 121 11333322 3345566653 221 122222346899999876532 1234333 36
Q ss_pred ccCCcCcEEEEEEEeCC
Q 000096 172 RIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 172 RIGQKKEVrVYRLITeg 188 (2260)
|.|.++++.+|.+-..+
T Consensus 248 R~g~~~ei~~F~i~~~G 264 (372)
T cd01121 248 RFGSTNELGVFEMRENG 264 (372)
T ss_pred CCCCCCCEEEEEECCCC
Confidence 77888888888776444
No 208
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=27.52 E-value=1.2e+02 Score=34.93 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCCeEEEEEcc-hhHHHHHHHHHhhcCceEE---EEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc---
Q 000096 66 DRLLPKLKATDHRVLFFSTM-TRLLDVMEDYLTFKQYRYL---RLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA--- 138 (2260)
Q Consensus 66 drLLkKLkenGhKVLIFSQf-TdtLDILED~LrkrGIkyv---RLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA--- 138 (2260)
.+.|+++++.|.++++.|+. ......+...|+..|+... .+..... -...+.+. ....+++++.+..
T Consensus 23 ~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~---~~~~l~~~---~~~~~v~~lg~~~l~~ 96 (249)
T TIGR01457 23 ETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMA---TADYMNDL---KLEKTVYVIGEEGLKE 96 (249)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHH---HHHHHHhc---CCCCEEEEEcChhHHH
Confidence 45666666788899888873 3556677788887777642 2222111 11122222 1223456655432
Q ss_pred --cccccCC--CccCeeEe-eCCCCChhhhhhhcccc
Q 000096 139 --GGVGVNL--QAADTVII-FDTDWNPQVDLQAQARA 170 (2260)
Q Consensus 139 --GGeGLNL--QaADhVII-FDpPWNParDLQAIGRA 170 (2260)
-..|+.+ ..++.||+ +|..++.....++.-++
T Consensus 97 ~l~~~g~~~~~~~~~~Vvvg~~~~~~y~~l~~a~~~l 133 (249)
T TIGR01457 97 AIKEAGYVEDKEKPDYVVVGLDRQIDYEKFATATLAI 133 (249)
T ss_pred HHHHcCCEecCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1235443 35666655 55555555555555444
No 209
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=27.44 E-value=3.3e+02 Score=29.81 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=54.5
Q ss_pred eEEEEEcchhHHHHHHHHHhhcCce--EEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeC
Q 000096 78 RVLFFSTMTRLLDVMEDYLTFKQYR--YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 155 (2260)
Q Consensus 78 KVLIFSQfTdtLDILED~LrkrGIk--yvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFD 155 (2260)
.|=|++|+-.+...|.+++..+|+. ++.-.|....-.-.++++.|. .|..++++++. ++
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~-~D~~t~~I~ly------------------~E 63 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLA-EDPDTRVIVLY------------------LE 63 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHC-T-SS--EEEEE------------------ES
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHh-cCCCCCEEEEE------------------cc
Confidence 4678999999999999999887654 566667766667788899884 46677776644 44
Q ss_pred CCCChhhhhhhcccccccCCcCcEEEEEEE
Q 000096 156 TDWNPQVDLQAQARAHRIGQKRDVLVLRFE 185 (2260)
Q Consensus 156 pPWNParDLQAIGRAHRIGQKKEVrVYRLI 185 (2260)
.--||..+.++..|+.|. |+|.+|+-=
T Consensus 64 ~~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 64 GIGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp --S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 445677788887777764 888888654
No 210
>PRK14701 reverse gyrase; Provisional
Probab=27.31 E-value=2.6e+02 Score=41.10 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=55.1
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh------cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeE
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF------KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 130 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk------rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~ 130 (2260)
.-+||-.++.-+...+...+.++||.+..+..+.-+.+.|+. .++.+..++|+++..++..+++.+..++. .
T Consensus 103 TGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~--d 180 (1638)
T PRK14701 103 TGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDF--D 180 (1638)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCC--C
Confidence 458898744433333334677999999998877766666654 25677889999999999888888855443 4
Q ss_pred EEEEccc
Q 000096 131 IFLLSIR 137 (2260)
Q Consensus 131 VLLLSTR 137 (2260)
|++.++.
T Consensus 181 ILV~TPg 187 (1638)
T PRK14701 181 ILVTTAQ 187 (1638)
T ss_pred EEEECCc
Confidence 6665544
No 211
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.11 E-value=5.3e+02 Score=32.60 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=64.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
.-+||-.. -+|..+. .+..+||.+.....+.-..+.|...|+....+.|.....++..++..... ..+.++++++
T Consensus 35 TGsGKTl~--y~lp~l~-~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~--~~~~il~~TP 109 (470)
T TIGR00614 35 TGGGKSLC--YQLPALC-SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD--GKIKLLYVTP 109 (470)
T ss_pred CCCcHhHH--HHHHHHH-cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECH
Confidence 44788532 2333333 35678999999988777777888889999999999999988888888744 3456777776
Q ss_pred ccccccc-------CCCccCeeEeeCC
Q 000096 137 RAGGVGV-------NLQAADTVIIFDT 156 (2260)
Q Consensus 137 RAGGeGL-------NLQaADhVIIFDp 156 (2260)
....... .+....+||+=+-
T Consensus 110 e~l~~~~~~~~~l~~~~~i~~iViDEa 136 (470)
T TIGR00614 110 EKCSASNRLLQTLEERKGITLIAVDEA 136 (470)
T ss_pred HHHcCchhHHHHHHhcCCcCEEEEeCC
Confidence 6543222 3445666666443
No 212
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=26.22 E-value=4.5e+02 Score=36.06 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=15.7
Q ss_pred CcccccccCCCCCCCCCccCCCC
Q 000096 487 QHVMVGIAPSSQPTTAFVPVAPG 509 (2260)
Q Consensus 487 ~~~~~gi~p~s~p~tp~~~v~~~ 509 (2260)
-+.+.|++|++.|....+..+.|
T Consensus 917 vsvg~GlP~~Skps~k~p~~~tg 939 (1106)
T KOG0162|consen 917 VSVGTGLPPNSKPSRKKPRKATG 939 (1106)
T ss_pred EEecCCCCCCCCcCCcCcccCCC
Confidence 35677888888877776665433
No 213
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.28 E-value=8.2e+02 Score=32.11 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCccCCCCCHHHHHHHHHHHHHHhhhcc------cCCCCCHHHHHHHHHhChhhHHHHHHH
Q 000096 193 QVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEE------AAPVLDDDALNDLLARSESEIDVFESV 265 (2260)
Q Consensus 193 KIyERArrKLdLAekVIqaG~FDnksSaEErrELLESLLre~kkEE------eaeVLDDEELNELLARSEeELdlFqsL 265 (2260)
..++..+.+.+++..++.+- +.........+++..|++.++..- ....-|++-+.++|+.+++...++.+.
T Consensus 195 seLe~~~~~~~ll~emL~~v--~p~~~e~~~~el~~~L~~qcr~~q~rv~~Li~~~~DE~ll~~lL~lND~L~~vL~~y 271 (470)
T KOG1087|consen 195 SELESVKGKADLLSEMLNAV--DPSDEEAAKDELLVDLVEQCRSKQRRVMHLIEETSDEELLCELLKLNDELQRVLERY 271 (470)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHH
Confidence 45677888888888888742 222222233345555554432100 011237777788888888766655543
No 214
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=25.25 E-value=1.4e+02 Score=29.24 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=32.1
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCC
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTS 111 (2260)
..++++||+|..-.........|+..||.+..|.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 45688999999877778888899999999888999864
No 215
>PTZ00062 glutaredoxin; Provisional
Probab=24.55 E-value=3.5e+02 Score=31.47 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCCeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHH
Q 000096 65 LDRLLPKLKATDHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120 (2260)
Q Consensus 65 LdrLLkKLkenGhKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIID 120 (2260)
+...|.++. +.++|+||+. +......+.++|+..++.|..++=....+.|+.+.+
T Consensus 102 ~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~ 162 (204)
T PTZ00062 102 TVEKIERLI-RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKV 162 (204)
T ss_pred HHHHHHHHH-hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHH
Confidence 444555544 3589999988 567888999999999999998887766666666554
No 216
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=24.22 E-value=1.6e+02 Score=30.74 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=29.5
Q ss_pred cCCCeEEEEEcc-hhHHHHHHHHHhhcCceEEEEeCCCCH
Q 000096 74 ATDHRVLFFSTM-TRLLDVMEDYLTFKQYRYLRLDGHTSG 112 (2260)
Q Consensus 74 enGhKVLIFSQf-TdtLDILED~LrkrGIkyvRLDGSTSq 112 (2260)
....++||||+. -.........|+..|+.+..|+|++..
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 457899999973 344555667778889999999999753
No 217
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=24.08 E-value=2.3e+02 Score=27.94 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=29.3
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTS 111 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIk-yvRLDGSTS 111 (2260)
..++++||||+.-........+|...|+. +..|+|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45678999998766666667788888985 778888764
No 218
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=23.43 E-value=1.8e+02 Score=28.68 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=29.7
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTS 111 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIk-yvRLDGSTS 111 (2260)
.+.+++|||+.-........+|...|+. +..|+|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 4789999999876777777788888885 778999865
No 219
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=22.86 E-value=1.3e+02 Score=42.12 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=61.0
Q ss_pred cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCC---------CCChhhhhhhccc
Q 000096 99 KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT---------DWNPQVDLQAQAR 169 (2260)
Q Consensus 99 rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDp---------PWNParDLQAIGR 169 (2260)
+|+. ..|+++=+.-|..+-..|..+-- + +|+.|...+.|+|+. |.+|+++.. +.+|..|.|--||
T Consensus 445 RGia--vHH~GlLP~~K~~vE~Lfq~GLv--k-vvFaTeT~s~GiNmP-artvv~~~l~K~dG~~~r~L~~gEy~QmsGR 518 (1041)
T COG4581 445 RGIA--VHHAGLLPAIKELVEELFQEGLV--K-VVFATETFAIGINMP-ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGR 518 (1041)
T ss_pred hhhh--hhccccchHHHHHHHHHHhccce--e-EEeehhhhhhhcCCc-ccceeeeeeEEecCCceeecChhHHHHhhhh
Confidence 4544 57888888899999999966533 3 678899999999998 455555432 3478899999999
Q ss_pred ccccCCcCcEEEEEEE
Q 000096 170 AHRIGQKRDVLVLRFE 185 (2260)
Q Consensus 170 AHRIGQKKEVrVYRLI 185 (2260)
++|.|+....+|.-..
T Consensus 519 AGRRGlD~~G~vI~~~ 534 (1041)
T COG4581 519 AGRRGLDVLGTVIVIE 534 (1041)
T ss_pred hccccccccceEEEec
Confidence 9999998775554443
No 220
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=22.51 E-value=2.3e+02 Score=36.18 Aligned_cols=92 Identities=12% Similarity=0.163 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchh----HHHHHHHHHhhcCceEEEE-eCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMTR----LLDVMEDYLTFKQYRYLRL-DGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfTd----tLDILED~LrkrGIkyvRL-DGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
++.....++.+....++|++||+.|.. ..-+|..+|+..|+.+..+ -.......= +++.+...+.. +|++
T Consensus 21 ~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~---liIt 95 (491)
T COG0608 21 DMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGAD---LIIT 95 (491)
T ss_pred hHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCC---EEEE
Confidence 455555566666678999999999875 4778999998888554322 222221110 33434334445 7778
Q ss_pred ccccccccCCCcc-----CeeEeeCCC
Q 000096 136 IRAGGVGVNLQAA-----DTVIIFDTD 157 (2260)
Q Consensus 136 TRAGGeGLNLQaA-----DhVIIFDpP 157 (2260)
.+.|.-.++.... -.||+.|++
T Consensus 96 vD~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 96 VDNGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred ECCCcccHHHHHHHHhCCCcEEEECCC
Confidence 8888877765543 678888888
No 221
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.23 E-value=5.2e+02 Score=29.42 Aligned_cols=67 Identities=10% Similarity=0.202 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 62 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 62 LELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
.+++..++......+.|+-++-.....++.+.+.|+.+ ++.++..+|-...++...++++-|+....
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~d 102 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAG 102 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCC
Confidence 57888888877777889999999999999999999654 77777678988888888888888765544
No 222
>PRK05320 rhodanese superfamily protein; Provisional
Probab=21.70 E-value=97 Score=36.65 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=32.8
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCce-EEEEeCCCCH
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTSG 112 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIk-yvRLDGSTSq 112 (2260)
.++++++||..-........+|+..|+. +..|.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 5688999999988888889999999995 7789999754
No 223
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=21.26 E-value=3.6e+02 Score=35.20 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=55.5
Q ss_pred ccccHHHH-HHHHHHHhhc---------CCCeEEEEEcchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHh
Q 000096 57 RLCGKLEM-LDRLLPKLKA---------TDHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKF 122 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLke---------nGhKVLIFSQfTdtLDILED~L----rkrGIkyvRLDGSTSqEERQeIIDrF 122 (2260)
.-|||-.. |.-+|..+.. .+-++||.+.+...+.-+.+.| ...++.+..++|+.....+...+..
T Consensus 55 TGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~- 133 (572)
T PRK04537 55 TGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ- 133 (572)
T ss_pred CCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC-
Confidence 45788754 3444444421 1358999999988765555544 4457889999999887665554432
Q ss_pred hCCCCCeEEEEEccccc----c--cccCCCccCeeEe
Q 000096 123 NQQDSPFFIFLLSIRAG----G--VGVNLQAADTVII 153 (2260)
Q Consensus 123 Nk~DSei~VLLLSTRAG----G--eGLNLQaADhVII 153 (2260)
.+.|+|.+.... - ..++|..+.+||+
T Consensus 134 -----~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 134 -----GVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred -----CCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 234555554322 1 2356777777666
No 224
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=21.03 E-value=3.7e+02 Score=33.10 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=55.0
Q ss_pred ccccHHHH-HHHHHHHhhc------CCCeEEEEEcchhHHHHHH----HHHhhcCceEEEEeCCCCHHHHHHHHHHhhCC
Q 000096 57 RLCGKLEM-LDRLLPKLKA------TDHRVLFFSTMTRLLDVME----DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 125 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLke------nGhKVLIFSQfTdtLDILE----D~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~ 125 (2260)
.-+||-.. +.-+|..+.. .+.++||.+.+...+.-+. .+....++.+..+.|+.....+...+..
T Consensus 47 TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~---- 122 (434)
T PRK11192 47 TGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE---- 122 (434)
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----
Confidence 34788643 3444443321 2358999999887655444 4445568899999999887665544421
Q ss_pred CCCeEEEEEccccc-----ccccCCCccCeeEee
Q 000096 126 DSPFFIFLLSIRAG-----GVGVNLQAADTVIIF 154 (2260)
Q Consensus 126 DSei~VLLLSTRAG-----GeGLNLQaADhVIIF 154 (2260)
...|++.++... ...+++...++||+=
T Consensus 123 --~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViD 154 (434)
T PRK11192 123 --NQDIVVATPGRLLQYIKEENFDCRAVETLILD 154 (434)
T ss_pred --CCCEEEEChHHHHHHHHcCCcCcccCCEEEEE
Confidence 234555554222 134566777777663
No 225
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=20.98 E-value=4.3e+02 Score=33.19 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred ccccHHH-HHHHHHHHhhcC--------CCeEEEEEcchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHhh
Q 000096 57 RLCGKLE-MLDRLLPKLKAT--------DHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 57 RsSGKLE-LLdrLLkKLken--------GhKVLIFSQfTdtLDILED~L----rkrGIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
.-+||-. ++.-+|..+... .-++||.+..+..+..+.+.+ ...++....+.|+++...... .+.
T Consensus 47 TGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~ 123 (456)
T PRK10590 47 TGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR 123 (456)
T ss_pred CCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc
Confidence 4478864 344455544321 237999999988766555544 455788888999987654332 231
Q ss_pred CCCCCeEEEEEccccc-----ccccCCCccCeeEe
Q 000096 124 QQDSPFFIFLLSIRAG-----GVGVNLQAADTVII 153 (2260)
Q Consensus 124 k~DSei~VLLLSTRAG-----GeGLNLQaADhVII 153 (2260)
..+.|++.++... ...++|...++||+
T Consensus 124 ---~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lVi 155 (456)
T PRK10590 124 ---GGVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (456)
T ss_pred ---CCCcEEEEChHHHHHHHHcCCcccccceEEEe
Confidence 2345666665332 23456777777776
No 226
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=20.87 E-value=1.7e+02 Score=30.48 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCC-CCHHHHHHHHHHhhCCCCCeEEEEEccccc
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH-TSGGDRGALIDKFNQQDSPFFIFLLSIRAG 139 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGS-TSqEERQeIIDrFNk~DSei~VLLLSTRAG 139 (2260)
|...+.+|...|...+.+|+.-.++.+.+.+++.+ ..+.++.++=. ........+++..+..+..+.|||+..+..
T Consensus 2 k~a~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~---~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~ 78 (115)
T PF03709_consen 2 KIAASRELAEALEQRGREVVDADSTDDALAIIESF---TDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERDT 78 (115)
T ss_dssp CHHHHHHHHHHHHHTTTEEEEESSHHHHHHHHHCT---TTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCCH
T ss_pred ChHHHHHHHHHHHHCCCEEEEeCChHHHHHHHHhC---CCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 45677888888877888888888877777777654 45666666533 112455667777777677899999998887
Q ss_pred ccccCCC---ccCeeEeeCCCCChhhhhhhc
Q 000096 140 GVGVNLQ---AADTVIIFDTDWNPQVDLQAQ 167 (2260)
Q Consensus 140 GeGLNLQ---aADhVIIFDpPWNParDLQAI 167 (2260)
..-+++. ..+.+|.+ ..-++..+.-++
T Consensus 79 ~~~l~~~~l~~v~~~i~l-~~~t~~fia~rI 108 (115)
T PF03709_consen 79 TEDLPAEVLGEVDGFIWL-FEDTAEFIARRI 108 (115)
T ss_dssp HHCCCHHHHCCESEEEET-TTTTHHHHHHHH
T ss_pred cccCCHHHHhhccEEEEe-cCCCHHHHHHHH
Confidence 7777744 45555555 333555444333
No 227
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=1.4e+03 Score=32.77 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.9
Q ss_pred cccccCCC
Q 000096 351 VRSYEEQW 358 (2260)
Q Consensus 351 ~V~Y~Dgl 358 (2260)
...|.++|
T Consensus 657 ~~~~s~~l 664 (1049)
T KOG0307|consen 657 NKTYSAGL 664 (1049)
T ss_pred CccccHHH
Confidence 34555553
No 228
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=20.16 E-value=3.5e+02 Score=38.27 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=51.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhH----HHHHHHHHhhcC-ceEEE-EeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRL----LDVMEDYLTFKQ-YRYLR-LDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdt----LDILED~LrkrG-IkyvR-LDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
.||-.+..-+--.+...|+|++|....+.. .+.|..+....+ +.... +|+.++..++..++++|.++|-. |+
T Consensus 108 vGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfd--Il 185 (1187)
T COG1110 108 VGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFD--IL 185 (1187)
T ss_pred CchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCcc--EE
Confidence 578777766666666678888877776654 445555554444 33332 89999999999999999766654 54
Q ss_pred EEc
Q 000096 133 LLS 135 (2260)
Q Consensus 133 LLS 135 (2260)
+.+
T Consensus 186 itT 188 (1187)
T COG1110 186 ITT 188 (1187)
T ss_pred EEe
Confidence 444
Done!