Query 000096
Match_columns 2260
No_of_seqs 453 out of 2590
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 15:18:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 6.2E-36 2.1E-40 327.4 17.4 182 17-212 66-248 (271)
2 3mwy_W Chromo domain-containin 100.0 8.5E-37 2.9E-41 373.7 9.9 202 14-215 504-711 (800)
3 1z3i_X Similar to RAD54-like; 100.0 5.9E-32 2E-36 324.5 21.9 197 16-212 346-552 (644)
4 3hgt_A HDA1 complex subunit 3; 100.0 9E-31 3.1E-35 297.7 17.0 174 17-199 67-248 (328)
5 1z63_A Helicase of the SNF2/RA 100.0 4.3E-30 1.5E-34 293.6 13.3 183 16-212 294-477 (500)
6 1wp9_A ATP-dependent RNA helic 99.9 2.5E-23 8.5E-28 227.1 11.6 144 57-206 340-493 (494)
7 3dmq_A RNA polymerase-associat 99.8 6.7E-20 2.3E-24 230.3 15.1 153 55-210 484-637 (968)
8 4a2p_A RIG-I, retinoic acid in 99.8 1.3E-18 4.5E-23 198.2 12.6 145 58-210 370-529 (556)
9 2hjv_A ATP-dependent RNA helic 99.8 3.3E-18 1.1E-22 172.0 13.9 136 56-200 17-152 (163)
10 2fwr_A DNA repair protein RAD2 99.8 3.5E-19 1.2E-23 202.6 6.9 140 56-205 331-471 (472)
11 1t5i_A C_terminal domain of A 99.8 5.3E-18 1.8E-22 172.9 13.8 124 56-186 13-136 (172)
12 2jgn_A DBX, DDX3, ATP-dependen 99.7 3.4E-18 1.2E-22 176.8 11.4 128 55-188 26-153 (185)
13 2p6n_A ATP-dependent RNA helic 99.7 4.4E-18 1.5E-22 177.4 11.6 126 55-188 36-161 (191)
14 1fuk_A Eukaryotic initiation f 99.7 1.9E-17 6.4E-22 166.4 14.9 124 60-190 16-139 (165)
15 3tbk_A RIG-I helicase domain; 99.7 4.8E-18 1.7E-22 192.5 10.9 144 58-209 369-527 (555)
16 2rb4_A ATP-dependent RNA helic 99.7 7.8E-17 2.7E-21 163.4 14.8 124 59-189 19-148 (175)
17 4a2q_A RIG-I, retinoic acid in 99.7 2.1E-17 7E-22 202.3 11.5 145 58-210 611-770 (797)
18 3eaq_A Heat resistant RNA depe 99.7 1.9E-16 6.5E-21 166.6 15.7 134 57-199 14-147 (212)
19 4a2w_A RIG-I, retinoic acid in 99.7 7.4E-17 2.5E-21 202.0 14.0 146 58-211 611-771 (936)
20 2yjt_D ATP-dependent RNA helic 99.5 3.1E-18 1E-22 173.3 0.0 119 59-182 15-133 (170)
21 1xti_A Probable ATP-dependent 99.7 7.7E-16 2.6E-20 168.2 17.6 137 56-200 232-368 (391)
22 2j0s_A ATP-dependent RNA helic 99.6 1.1E-15 3.7E-20 169.2 11.8 124 59-189 261-384 (410)
23 1s2m_A Putative ATP-dependent 99.6 7.9E-15 2.7E-19 161.5 17.7 126 56-188 240-365 (400)
24 3i32_A Heat resistant RNA depe 99.6 3.1E-15 1.1E-19 167.3 14.6 126 56-188 10-135 (300)
25 3pey_A ATP-dependent RNA helic 99.6 4.8E-15 1.6E-19 160.8 14.1 122 58-186 227-354 (395)
26 3eiq_A Eukaryotic initiation f 99.6 1.8E-15 6.2E-20 166.4 10.5 124 58-188 264-387 (414)
27 1hv8_A Putative ATP-dependent 99.6 6.2E-15 2.1E-19 158.4 14.2 125 57-189 222-346 (367)
28 3fht_A ATP-dependent RNA helic 99.6 1.1E-14 3.8E-19 159.7 16.4 136 58-201 250-391 (412)
29 4gl2_A Interferon-induced heli 99.6 2.1E-15 7.2E-20 179.3 11.6 146 58-210 379-541 (699)
30 2i4i_A ATP-dependent RNA helic 99.6 1.1E-14 3.7E-19 160.9 13.8 126 57-188 258-383 (417)
31 2z0m_A 337AA long hypothetical 99.5 5.4E-15 1.9E-19 157.6 8.3 117 74-198 218-334 (337)
32 2ykg_A Probable ATP-dependent 99.5 7.6E-15 2.6E-19 174.4 10.4 129 58-193 378-521 (696)
33 2db3_A ATP-dependent RNA helic 99.5 4.2E-14 1.4E-18 161.8 15.5 123 57-187 284-406 (434)
34 1fuu_A Yeast initiation factor 99.5 2.1E-15 7.3E-20 164.4 1.7 122 60-188 245-366 (394)
35 2oca_A DAR protein, ATP-depend 99.5 5.3E-14 1.8E-18 161.8 12.6 134 57-194 328-464 (510)
36 1oyw_A RECQ helicase, ATP-depe 99.4 1E-12 3.5E-17 155.3 14.6 121 56-181 218-338 (523)
37 3h1t_A Type I site-specific re 99.4 4.8E-13 1.6E-17 157.8 11.1 111 74-185 437-558 (590)
38 3i5x_A ATP-dependent RNA helic 99.4 1.1E-12 3.7E-17 152.7 13.3 119 74-199 337-458 (563)
39 3sqw_A ATP-dependent RNA helic 99.4 1.3E-12 4.4E-17 154.4 13.5 132 62-200 272-408 (579)
40 3fmp_B ATP-dependent RNA helic 99.4 8.5E-14 2.9E-18 159.3 1.4 117 59-180 318-440 (479)
41 2v1x_A ATP-dependent DNA helic 99.3 3E-12 1E-16 154.2 13.2 105 75-182 266-370 (591)
42 3oiy_A Reverse gyrase helicase 99.3 3E-12 1E-16 143.5 11.3 129 59-203 238-376 (414)
43 1c4o_A DNA nucleotide excision 99.3 2E-11 6.8E-16 148.9 16.3 126 58-189 421-551 (664)
44 3fho_A ATP-dependent RNA helic 99.3 1.8E-12 6.1E-17 151.7 6.3 120 58-182 341-466 (508)
45 2d7d_A Uvrabc system protein B 99.3 3.7E-11 1.3E-15 146.5 17.2 126 59-190 428-558 (661)
46 2xgj_A ATP-dependent RNA helic 99.1 1.9E-10 6.5E-15 146.4 13.5 123 64-189 330-500 (1010)
47 2va8_A SSO2462, SKI2-type heli 99.1 7.3E-10 2.5E-14 133.9 14.1 115 72-189 248-409 (715)
48 2eyq_A TRCF, transcription-rep 99.0 3.9E-10 1.3E-14 145.2 11.8 123 60-188 797-922 (1151)
49 1tf5_A Preprotein translocase 99.0 2.7E-10 9.2E-15 142.9 10.0 117 58-179 414-538 (844)
50 2zj8_A DNA helicase, putative 99.0 6.6E-10 2.3E-14 134.8 12.4 126 60-192 225-391 (720)
51 2p6r_A Afuhel308 helicase; pro 99.0 4.7E-10 1.6E-14 135.8 10.8 125 61-192 231-392 (702)
52 3l9o_A ATP-dependent RNA helic 99.0 4.4E-10 1.5E-14 144.3 10.9 129 62-193 426-602 (1108)
53 3jux_A Protein translocase sub 99.0 1.1E-09 3.9E-14 136.0 11.7 119 57-180 455-581 (822)
54 1yks_A Genome polyprotein [con 99.0 3.3E-10 1.1E-14 131.3 5.6 94 74-175 175-287 (440)
55 2wv9_A Flavivirin protease NS2 98.9 8.9E-10 3.1E-14 135.3 8.7 130 73-212 407-558 (673)
56 2fsf_A Preprotein translocase 98.9 1.6E-09 5.6E-14 135.9 10.8 120 57-181 422-578 (853)
57 3rc3_A ATP-dependent RNA helic 98.9 1.4E-09 4.9E-14 133.8 10.0 109 77-187 321-444 (677)
58 2jlq_A Serine protease subunit 98.9 9.4E-10 3.2E-14 127.6 7.7 96 74-177 186-301 (451)
59 2z83_A Helicase/nucleoside tri 98.9 7.6E-10 2.6E-14 128.8 5.0 105 75-188 189-313 (459)
60 2whx_A Serine protease/ntpase/ 98.9 1.4E-09 4.7E-14 132.2 7.4 122 74-204 353-495 (618)
61 4a4z_A Antiviral helicase SKI2 98.9 5E-09 1.7E-13 133.4 12.4 132 59-196 321-500 (997)
62 1nkt_A Preprotein translocase 98.9 1E-08 3.4E-13 129.4 14.6 118 58-180 442-611 (922)
63 1gm5_A RECG; helicase, replica 98.8 8.2E-10 2.8E-14 137.7 3.5 121 59-182 561-693 (780)
64 2v6i_A RNA helicase; membrane, 98.8 3E-09 1E-13 123.0 6.8 101 74-182 169-287 (431)
65 1gku_B Reverse gyrase, TOP-RG; 98.8 3.6E-09 1.2E-13 135.1 7.3 132 59-204 261-468 (1054)
66 2xau_A PRE-mRNA-splicing facto 98.8 3.3E-09 1.1E-13 131.9 6.2 112 75-190 302-445 (773)
67 4ddu_A Reverse gyrase; topoiso 98.7 1.3E-08 4.3E-13 131.0 8.9 88 59-158 295-388 (1104)
68 3o8b_A HCV NS3 protease/helica 98.6 7.3E-08 2.5E-12 119.0 11.5 102 75-191 395-517 (666)
69 2w00_A HSDR, R.ECOR124I; ATP-b 98.0 2.3E-05 8E-10 101.0 12.4 108 75-186 536-707 (1038)
70 4f92_B U5 small nuclear ribonu 97.9 3.5E-05 1.2E-09 103.6 11.8 114 75-191 316-476 (1724)
71 4f92_B U5 small nuclear ribonu 97.7 6.5E-05 2.2E-09 101.1 10.5 112 74-188 1153-1308(1724)
72 2vl7_A XPD; helicase, unknown 96.2 0.012 4E-07 70.7 9.6 92 63-161 370-466 (540)
73 2ipc_A Preprotein translocase 94.6 0.08 2.7E-06 68.5 9.9 120 58-182 425-694 (997)
74 4a15_A XPD helicase, ATP-depen 90.1 0.58 2E-05 57.7 8.8 88 64-158 435-527 (620)
75 3oiy_A Reverse gyrase helicase 70.0 14 0.00047 41.9 9.4 96 56-153 44-145 (414)
76 1gm5_A RECG; helicase, replica 66.6 15 0.00051 47.0 9.7 98 58-157 399-500 (780)
77 3crv_A XPD/RAD3 related DNA he 55.0 34 0.0012 41.3 9.5 91 62-161 378-476 (551)
78 3sxu_A DNA polymerase III subu 53.6 47 0.0016 35.0 9.1 38 59-96 22-59 (150)
79 4ddu_A Reverse gyrase; topoiso 52.9 32 0.0011 45.5 9.6 98 56-155 101-204 (1104)
80 2eyq_A TRCF, transcription-rep 47.1 55 0.0019 43.5 10.4 95 57-153 633-731 (1151)
81 1wp9_A ATP-dependent RNA helic 46.1 61 0.0021 36.0 9.1 89 58-153 33-131 (494)
82 3ipz_A Monothiol glutaredoxin- 45.1 63 0.0021 31.3 7.9 55 67-122 9-69 (109)
83 3i42_A Response regulator rece 44.7 34 0.0012 31.6 5.8 104 63-175 17-124 (127)
84 3eqz_A Response regulator; str 44.6 65 0.0022 29.7 7.7 96 76-176 27-128 (135)
85 3nhm_A Response regulator; pro 44.4 62 0.0021 30.0 7.6 95 75-173 26-122 (133)
86 1t6n_A Probable ATP-dependent 43.7 1E+02 0.0034 31.9 9.7 92 57-153 60-164 (220)
87 2yan_A Glutaredoxin-3; oxidore 43.4 76 0.0026 30.0 8.1 56 67-123 8-69 (105)
88 3g5j_A Putative ATP/GTP bindin 41.2 31 0.0011 33.2 5.1 49 63-112 76-126 (134)
89 3cg4_A Response regulator rece 39.9 1.4E+02 0.0049 27.9 9.4 38 99-136 50-89 (142)
90 3a10_A Response regulator; pho 39.7 86 0.0029 28.4 7.6 92 75-171 24-115 (116)
91 3gx8_A Monothiol glutaredoxin- 39.7 1.3E+02 0.0043 30.1 9.3 47 76-122 15-70 (121)
92 2j48_A Two-component sensor ki 39.5 56 0.0019 29.0 6.2 100 64-172 16-117 (119)
93 2oxc_A Probable ATP-dependent 38.4 95 0.0033 32.6 8.7 90 57-153 70-172 (230)
94 3fe2_A Probable ATP-dependent 38.4 1.3E+02 0.0045 31.8 9.8 91 57-153 75-182 (242)
95 1gku_B Reverse gyrase, TOP-RG; 37.8 57 0.0019 42.9 8.3 93 57-153 80-181 (1054)
96 3gk5_A Uncharacterized rhodane 36.8 36 0.0012 32.7 4.8 47 64-111 44-90 (108)
97 3zyw_A Glutaredoxin-3; metal b 35.6 1.1E+02 0.0037 30.0 8.0 48 75-122 14-67 (111)
98 1xti_A Probable ATP-dependent 34.1 1.5E+02 0.0052 32.7 9.8 92 57-153 54-158 (391)
99 3ber_A Probable ATP-dependent 33.7 1.5E+02 0.005 32.0 9.4 91 57-153 89-192 (249)
100 3grc_A Sensor protein, kinase; 33.5 1.3E+02 0.0043 28.3 7.9 102 64-172 21-126 (140)
101 3iuy_A Probable ATP-dependent 32.3 93 0.0032 32.4 7.4 91 57-153 66-173 (228)
102 3n53_A Response regulator rece 32.0 2E+02 0.0067 27.1 8.9 36 100-135 46-83 (140)
103 1wik_A Thioredoxin-like protei 31.9 1.2E+02 0.004 29.1 7.5 47 76-122 14-66 (109)
104 2rdm_A Response regulator rece 31.6 80 0.0027 29.1 6.1 92 75-175 28-125 (132)
105 3tbk_A RIG-I helicase domain; 31.3 70 0.0024 36.9 6.8 91 57-153 28-133 (555)
106 2wem_A Glutaredoxin-related pr 30.7 1.7E+02 0.006 29.2 8.7 47 76-122 19-72 (118)
107 3cnb_A DNA-binding response re 30.7 1.3E+02 0.0045 28.0 7.4 103 64-175 23-132 (143)
108 2b4a_A BH3024; flavodoxin-like 30.2 1.8E+02 0.006 27.3 8.3 100 63-172 29-130 (138)
109 2wci_A Glutaredoxin-4; redox-a 30.1 1.1E+02 0.0037 31.5 7.3 46 77-122 35-86 (135)
110 3lte_A Response regulator; str 30.0 1.1E+02 0.0038 28.2 6.8 45 76-124 30-74 (132)
111 2gxq_A Heat resistant RNA depe 29.2 1.9E+02 0.0065 29.3 8.9 91 57-153 47-150 (207)
112 4a2p_A RIG-I, retinoic acid in 29.0 80 0.0027 36.7 6.8 91 57-153 31-136 (556)
113 2pl3_A Probable ATP-dependent 27.9 1.9E+02 0.0066 30.2 8.9 90 57-153 71-177 (236)
114 1y80_A Predicted cobalamin bin 27.7 1E+02 0.0034 32.9 6.8 48 75-122 87-138 (210)
115 1qde_A EIF4A, translation init 26.4 1.1E+02 0.0036 31.7 6.5 90 57-153 60-161 (224)
116 1u6t_A SH3 domain-binding glut 25.8 99 0.0034 31.9 6.0 45 79-123 2-53 (121)
117 2jtq_A Phage shock protein E; 25.0 1E+02 0.0035 28.0 5.5 46 65-111 29-76 (85)
118 2l82_A Designed protein OR32; 24.7 1.7E+02 0.0059 30.4 7.5 48 78-125 4-51 (162)
119 2qxy_A Response regulator; reg 24.7 77 0.0026 29.8 4.7 93 75-175 27-123 (142)
120 3hdg_A Uncharacterized protein 23.2 1.1E+02 0.0039 28.5 5.5 57 76-136 31-87 (137)
121 2v1x_A ATP-dependent DNA helic 22.8 1.7E+02 0.0057 36.2 8.4 80 57-139 68-147 (591)
122 3ly5_A ATP-dependent RNA helic 22.3 3.2E+02 0.011 29.6 9.6 91 57-153 100-207 (262)
123 2gkg_A Response regulator homo 21.9 1.4E+02 0.0047 27.1 5.7 15 157-171 109-123 (127)
124 4a2q_A RIG-I, retinoic acid in 21.7 1.2E+02 0.0041 38.2 7.0 90 58-153 273-377 (797)
125 1gmx_A GLPE protein; transfera 21.7 93 0.0032 29.5 4.7 46 65-111 48-94 (108)
126 4dad_A Putative pilus assembly 21.5 1.4E+02 0.0048 28.3 5.9 105 64-174 35-142 (146)
127 3b6e_A Interferon-induced heli 21.3 95 0.0032 31.4 4.9 57 58-114 58-124 (216)
128 1t1v_A SH3BGRL3, SH3 domain-bi 20.8 2.2E+02 0.0075 26.4 6.9 46 78-123 3-55 (93)
129 2ezd_A High mobility group pro 20.6 39 0.0013 27.4 1.5 14 427-440 2-15 (26)
130 2wul_A Glutaredoxin related pr 20.0 3.4E+02 0.012 27.7 8.5 65 63-133 11-82 (118)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=6.2e-36 Score=327.42 Aligned_cols=182 Identities=28% Similarity=0.461 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH
Q 000096 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 96 (2260)
Q Consensus 17 RSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L 96 (2260)
..+++.+++|||+||||+++... ..++..++|+..|.++|..+...++|+||||+|+.++++|..+|
T Consensus 66 ~~~l~~l~~Lrq~~~hP~l~~~~-------------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L 132 (271)
T 1z5z_A 66 GMILSTLLKLKQIVDHPALLKGG-------------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNII 132 (271)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHCS-------------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHhcCC-------------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHH
Confidence 46899999999999999998511 12456799999999999999888999999999999999999999
Q ss_pred hhc-CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCC
Q 000096 97 TFK-QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 97 rkr-GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
... |+.+.+|+|+++..+|++++++|+.+. .++|||++|+++|+||||+.|++||+||+||||..+.||+||+||+||
T Consensus 133 ~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq 211 (271)
T 1z5z_A 133 EKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQ 211 (271)
T ss_dssp HHHHCSCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC------------
T ss_pred HHhcCCcEEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCC
Confidence 885 999999999999999999999998753 356899999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 000096 176 KRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212 (2260)
Q Consensus 176 KKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG 212 (2260)
+++|+||+|++.+|+||+|++++..|..+++.+++.+
T Consensus 212 ~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 212 TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 248 (271)
T ss_dssp --CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGT
T ss_pred CCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999865
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-37 Score=373.71 Aligned_cols=202 Identities=47% Similarity=0.711 Sum_probs=173.0
Q ss_pred CchhhHHHHHHHHHHHhcCCccccccccccccc------CCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchh
Q 000096 14 SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL------IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR 87 (2260)
Q Consensus 14 sKgRSLfNiLMQLRKICNHPYLfqlSeEEVd~L------lPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTd 87 (2260)
.....+++++++||++|+||||+....+..... ........++..|+|+.+|.++|.++...++|+||||+|+.
T Consensus 504 ~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~ 583 (800)
T 3mwy_W 504 GGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVR 583 (800)
T ss_dssp ---CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHH
T ss_pred cchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHH
Confidence 334579999999999999999986543322111 11112235677899999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhc
Q 000096 88 LLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQ 167 (2260)
Q Consensus 88 tLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAI 167 (2260)
++++|+++|...|+.|.+|+|+++..+|++++++||.++...+|||++|++||+||||+.|++||+||++|||..+.||+
T Consensus 584 ~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~ 663 (800)
T 3mwy_W 584 MLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAM 663 (800)
T ss_dssp HHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHH
Confidence 99999999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred ccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCccC
Q 000096 168 ARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFD 215 (2260)
Q Consensus 168 GRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~FD 215 (2260)
||+||+||+++|+||||++.+|+|++|++++.+|+.+.+.+|+.|..+
T Consensus 664 gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~ 711 (800)
T 3mwy_W 664 ARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTD 711 (800)
T ss_dssp TTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC---------
T ss_pred HHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 999999999999999999999999999999999999999999877544
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=5.9e-32 Score=324.54 Aligned_cols=197 Identities=35% Similarity=0.590 Sum_probs=171.6
Q ss_pred hhhHHHHHHHHHHHhcCCcccccccc-------cccccCCcccc--ccccccccHHHHHHHHHHHhhc-CCCeEEEEEcc
Q 000096 16 GRSVHNSVMELRNICNHPYLSQLHAE-------EVDTLIPKHYL--PPIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTM 85 (2260)
Q Consensus 16 gRSLfNiLMQLRKICNHPYLfqlSeE-------EVd~LlPe~~l--~~LIRsSGKLELLdrLLkKLke-nGhKVLIFSQf 85 (2260)
...++..+++|||+||||+++..... ......+..+. ......|+|+.+|..+|..+.. .++|+||||+|
T Consensus 346 ~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~ 425 (644)
T 1z3i_X 346 SVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNY 425 (644)
T ss_dssp CHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred chhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 35688999999999999999742110 00111111111 1234569999999999998764 58999999999
Q ss_pred hhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhh
Q 000096 86 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQ 165 (2260)
Q Consensus 86 TdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQ 165 (2260)
+.++++|+.+|...|+.|.+|+|+++..+|++++++|+.++...++||++|++||+||||+.|++||+||++|||..+.|
T Consensus 426 ~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Q 505 (644)
T 1z3i_X 426 TQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQ 505 (644)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHH
Confidence 99999999999999999999999999999999999999887777899999999999999999999999999999999999
Q ss_pred hcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 000096 166 AQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212 (2260)
Q Consensus 166 AIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG 212 (2260)
|+||+||+||+++|+||+|++.+|+||+|++++..|+.+++.+++.+
T Consensus 506 a~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 506 AMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE 552 (644)
T ss_dssp HHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred HHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999998764
No 4
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=9e-31 Score=297.74 Aligned_cols=174 Identities=19% Similarity=0.243 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH
Q 000096 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 96 (2260)
Q Consensus 17 RSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L 96 (2260)
.++.|++|+||||||||||+..+... ...........+++.||||.+|.+||..+.+.++|||||||++.++|+|+++|
T Consensus 67 ~sl~nli~qLRkicnHP~L~~d~~~p-~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l 145 (328)
T 3hgt_A 67 ESMKTMCLNGSLVATHPYLLIDHYMP-KSLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALL 145 (328)
T ss_dssp HHHHHHHHHHHHHHHCGGGTCCTTCC-SCSCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhhccccCC-ccccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHH
Confidence 47899999999999999998422111 11111122346788999999999999999999999999999999999999999
Q ss_pred hhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccC-----CCccCeeEeeCCCCChhhh-hhhcccc
Q 000096 97 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVN-----LQAADTVIIFDTDWNPQVD-LQAQARA 170 (2260)
Q Consensus 97 rkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLN-----LQaADhVIIFDpPWNParD-LQAIGRA 170 (2260)
..+++.|.|++|.+... +++ ..+..++|+|+ +++||.|+| |..||+||+||++|||+.+ +||+.|+
T Consensus 146 ~~~~~~y~RlDG~~~~~-~~k------~~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 146 LGNKVHIKRYDGHSIKS-AAA------ANDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp TTSSCEEEESSSCCC--------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred hcCCCceEeCCCCchhh-hhh------cccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 99999999999996542 222 12456888887 568888886 8999999999999999998 9999999
Q ss_pred ccc--CCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000096 171 HRI--GQKRDVLVLRFETVQTVEEQVRASAE 199 (2260)
Q Consensus 171 HRI--GQKKEVrVYRLITegTVEEKIyERAr 199 (2260)
||+ ||++.|.||||++.+|||+.+++.-+
T Consensus 218 ~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 218 KRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp C---------CCEEEEEETTSHHHHHHHHHH
T ss_pred hhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 999 78999999999999999999988633
No 5
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=4.3e-30 Score=293.55 Aligned_cols=183 Identities=28% Similarity=0.457 Sum_probs=163.8
Q ss_pred hhhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHH
Q 000096 16 GRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDY 95 (2260)
Q Consensus 16 gRSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~ 95 (2260)
...++..+++||++|+||+++... ...+..++|+..|.++|.++...++|+||||++..++++|..+
T Consensus 294 ~~~~~~~l~~lr~~~~~p~l~~~~-------------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~ 360 (500)
T 1z63_A 294 KGMILSTLLKLKQIVDHPALLKGG-------------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNI 360 (500)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHCS-------------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHhcCc-------------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHH
Confidence 346889999999999999987521 1245678999999999999988999999999999999999999
Q ss_pred Hhhc-CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccC
Q 000096 96 LTFK-QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 174 (2260)
Q Consensus 96 Lrkr-GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIG 174 (2260)
|... |+.+.+++|+++..+|.+++++|+.+. .++++|++|+++++||||+.|++||+||++|||..+.||+||+||+|
T Consensus 361 l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~-~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 361 IEKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIG 439 (500)
T ss_dssp HHHHHTCCCCEEETTSCHHHHHHHHHHHHHCT-TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTT
T ss_pred HHHhhCCCeEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcC
Confidence 9875 999999999999999999999997753 35578999999999999999999999999999999999999999999
Q ss_pred CcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 000096 175 QKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212 (2260)
Q Consensus 175 QKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG 212 (2260)
|+++|+||+|++.+|+|++|++++.+|..+++.+++.+
T Consensus 440 q~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 477 (500)
T ss_dssp TTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGST
T ss_pred CCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999865
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=2.5e-23 Score=227.08 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=126.5
Q ss_pred ccccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeC--------CCCHHHHHHHHHHhhCCC
Q 000096 57 RLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG--------HTSGGDRGALIDKFNQQD 126 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDG--------STSqEERQeIIDrFNk~D 126 (2260)
..+.|+..|.++|..+. ..++|+||||++..+++.|.++|...|+.+.+++| +++..+|++++++|+.+.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 56789999999999876 57899999999999999999999999999999999 999999999999998766
Q ss_pred CCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000096 127 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 206 (2260)
Q Consensus 127 Sei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAe 206 (2260)
.. +|++|+++++||||+.+++||+||++|||..+.||+||+||.|| +++|+|++.+|+|++++.++.+|..+++
T Consensus 420 ~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 420 FN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp CS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred ce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 44 68889999999999999999999999999999999999999998 8999999999999999999999987764
No 7
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.81 E-value=6.7e-20 Score=230.27 Aligned_cols=153 Identities=21% Similarity=0.198 Sum_probs=139.2
Q ss_pred ccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHh-hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lr-krGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
.+..+.|+.+|.++|.. ..+.|+||||++...++.|..+|. ..|+++..+||+++..+|.+++++|+.++..+. +|
T Consensus 484 ~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~-vL 560 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQ-VL 560 (968)
T ss_dssp TTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCE-EE
T ss_pred ccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc-EE
Confidence 45678899999999986 478999999999999999999998 469999999999999999999999988764455 56
Q ss_pred EcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhc
Q 000096 134 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 210 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIq 210 (2260)
++|+++++|||++.+++||+||++|||..|.||+||+||+||++.|+||++++.+|+|++|++++.+|..++...+.
T Consensus 561 vaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~ 637 (968)
T 3dmq_A 561 LCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCP 637 (968)
T ss_dssp ECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCS
T ss_pred EecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999998776655443
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.76 E-value=1.3e-18 Score=198.15 Aligned_cols=145 Identities=15% Similarity=0.217 Sum_probs=87.2
Q ss_pred cccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhc------------CceEEEEeCCCCHHHHHHHHHHhh
Q 000096 58 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 58 sSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~Lrkr------------GIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
.++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4889999999998765 66899999999999999999999765 556667778899999999999997
Q ss_pred C-CCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000096 124 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 202 (2260)
Q Consensus 124 k-~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKL 202 (2260)
. +... +|++|+++++||||+.+++||+||++||+..|.||+|| + |.+.+.+|.|++.++++++ +.....|.
T Consensus 450 ~~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-g---R~~~g~~~~l~~~~~~~~~-~~~~~~k~ 521 (556)
T 4a2p_A 450 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVTSKTEVVEN-EKCNRYKE 521 (556)
T ss_dssp ----CC---EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHH
T ss_pred ccCceE---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCceEEEEEeCcchHHH-HHhhHHHH
Confidence 6 4444 68999999999999999999999999999999999999 4 4578999999999999998 66777777
Q ss_pred HHHHhhhc
Q 000096 203 GVANQSIT 210 (2260)
Q Consensus 203 dLAekVIq 210 (2260)
.++..++.
T Consensus 522 ~~~~~~i~ 529 (556)
T 4a2p_A 522 EMMNKAVE 529 (556)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776664
No 9
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.76 E-value=3.3e-18 Score=172.04 Aligned_cols=136 Identities=20% Similarity=0.322 Sum_probs=117.1
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
+..+.|+.+|.++|... .+.|+|||+++...++.|..+|...|+.+..+||+++..+|..++++|+.+... +|++
T Consensus 17 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~ 91 (163)
T 2hjv_A 17 VREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVA 91 (163)
T ss_dssp CCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEE
T ss_pred CChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEE
Confidence 45578999999999864 568999999999999999999999999999999999999999999999876554 6789
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 200 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArr 200 (2260)
|+++++|+|++.+++||+||++||+..|.||+||++|.|+... +|.|++.. |...+..+.+
T Consensus 92 T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 92 TDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGK--AISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp CGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEE--EEEEECGG--GHHHHHHHHH
T ss_pred CChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCce--EEEEecHH--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999998654 45556543 4444444443
No 10
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.76 E-value=3.5e-19 Score=202.56 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=114.2
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
...+.|+..|.++|.. ..++|+||||++...++.|.++|. +..++|.++..+|.+++++|+.+... +|++
T Consensus 331 ~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~---vLv~ 400 (472)
T 2fwr_A 331 FNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR---AIVS 400 (472)
T ss_dssp HSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---BCBC
T ss_pred hcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC---EEEE
Confidence 3467899999999987 468999999999999999999984 44689999999999999999876544 6789
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCc-CcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK-RDVLVLRFETVQTVEEQVRASAEHKLGVA 205 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQK-KEVrVYRLITegTVEEKIyERArrKLdLA 205 (2260)
|+++++||||+.+++||+||++||+..+.||+||++|.||. +.|.||+|++.+|+|+++.++.+.|.+++
T Consensus 401 T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 401 SQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp SSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred cCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999998 88999999999999999999998887654
No 11
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.75 E-value=5.3e-18 Score=172.89 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=111.6
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
+..+.|+.+|.++|... .+.|+||||++...++.|..+|...++.+..+||+++..+|..+++.|+.+... +|++
T Consensus 13 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLva 87 (172)
T 1t5i_A 13 LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVA 87 (172)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEE
T ss_pred CChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEE
Confidence 44577999999999865 568999999999999999999999999999999999999999999999876555 6889
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEe
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 186 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLIT 186 (2260)
|+++++|||++.+++||+||++||+..|.||+||++|.|+...+ |.|++
T Consensus 88 T~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~ 136 (172)
T 1t5i_A 88 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVS 136 (172)
T ss_dssp SSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEEC
T ss_pred CCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEc
Confidence 99999999999999999999999999999999999999987654 44444
No 12
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=176.80 Aligned_cols=128 Identities=24% Similarity=0.343 Sum_probs=99.9
Q ss_pred ccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLL 134 (2260)
.+..+.|+..|.++|.... .+.|+|||+++...++.|..+|...|+.+..++|+++..+|..++++|+.+... +|+
T Consensus 26 ~v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLv 101 (185)
T 2jgn_A 26 WVEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILV 101 (185)
T ss_dssp ECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEE
T ss_pred EeCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEE
Confidence 3456789999999998743 578999999999999999999999999999999999999999999999876555 688
Q ss_pred cccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 135 STRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
+|+++++|||++.+++||+||++||+..|.||+||++|.|++. .+|.|++..
T Consensus 102 aT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 102 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp EEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 9999999999999999999999999999999999999999754 456666543
No 13
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=177.40 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=109.0
Q ss_pred ccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEE
Q 000096 55 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 134 (2260)
Q Consensus 55 LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLL 134 (2260)
.+....|+..|.++|.. .+.|+||||++...++.|..+|...|+.+..++|+++..+|.+++++|+.+... +|+
T Consensus 36 ~~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLv 109 (191)
T 2p6n_A 36 YVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLV 109 (191)
T ss_dssp ECCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEE
T ss_pred EcChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEE
Confidence 34567899999988864 356899999999999999999999999999999999999999999999876554 688
Q ss_pred cccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 135 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 135 STRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
+|+++++|||++.+++||+||++||+..|.||+||++|.|++.. ++.|++..
T Consensus 110 aT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~--~i~l~~~~ 161 (191)
T 2p6n_A 110 ATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI--ATTFINKA 161 (191)
T ss_dssp ECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCE--EEEEECTT
T ss_pred EcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcE--EEEEEcCc
Confidence 99999999999999999999999999999999999999998764 45566654
No 14
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.74 E-value=1.9e-17 Score=166.44 Aligned_cols=124 Identities=20% Similarity=0.300 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccc
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 139 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAG 139 (2260)
.|+..|.++|... .+.|+|||+++...++.|..+|...++.+..+||+++..+|.++++.|+.+... +|++|+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChh
Confidence 3999999999875 568999999999999999999999999999999999999999999999876554 67899999
Q ss_pred ccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCH
Q 000096 140 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190 (2260)
Q Consensus 140 GeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTV 190 (2260)
++|+|++.+++||+||++|++..|.||+||++|.|+... +|.|++.+..
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 999999999999999999999999999999999997654 5666776654
No 15
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.73 E-value=4.8e-18 Score=192.55 Aligned_cols=144 Identities=17% Similarity=0.246 Sum_probs=101.4
Q ss_pred cccHHHHHHHHHHHhhc--CCCeEEEEEcchhHHHHHHHHHhhc------------CceEEEEeCCCCHHHHHHHHHHhh
Q 000096 58 LCGKLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 58 sSGKLELLdrLLkKLke--nGhKVLIFSQfTdtLDILED~Lrkr------------GIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
.+.|+..|.++|..+.. .+.|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 47899999999987753 4599999999999999999999866 345566677999999999999997
Q ss_pred C-CCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000096 124 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 202 (2260)
Q Consensus 124 k-~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKL 202 (2260)
. +... +|++|+++++||||+.+++||+||++||+..|.||+|| |+.+.+.+|.|++.++.+++ +.+...|.
T Consensus 449 ~~g~~~---vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e 520 (555)
T 3tbk_A 449 ASGDNN---ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKE 520 (555)
T ss_dssp ---CCS---EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHH
T ss_pred cCCCee---EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHH
Confidence 6 4444 67899999999999999999999999999999999999 66688999999999999888 45555555
Q ss_pred HHHHhhh
Q 000096 203 GVANQSI 209 (2260)
Q Consensus 203 dLAekVI 209 (2260)
.+++..+
T Consensus 521 ~~~~~~~ 527 (555)
T 3tbk_A 521 KIMNESI 527 (555)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 16
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=7.8e-17 Score=163.35 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=106.7
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
..|+.+|.++|..+ .+.|+|||+++...++.|..+|...|+.+..+||+++..+|..+++.|+.+... +|++|++
T Consensus 19 ~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~ 93 (175)
T 2rb4_A 19 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNV 93 (175)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCS
T ss_pred HhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecc
Confidence 34999999999865 567999999999999999999999999999999999999999999999876554 6889999
Q ss_pred cccccCCCccCeeEeeCCC------CChhhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 139 GGVGVNLQAADTVIIFDTD------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 139 GGeGLNLQaADhVIIFDpP------WNParDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
+++|||++.+++||+||++ |++..|.||+||++|.|+. -.+|.|+..+.
T Consensus 94 ~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 9999999999999999999 6678899999999999954 56677777654
No 17
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.70 E-value=2.1e-17 Score=202.32 Aligned_cols=145 Identities=16% Similarity=0.219 Sum_probs=92.0
Q ss_pred cccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhh------------cCceEEEEeCCCCHHHHHHHHHHhh
Q 000096 58 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTF------------KQYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 58 sSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~Lrk------------rGIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
.++|+..|.++|.+.. ..++|+||||+++.++++|.++|+. .|+.+..+||+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 5889999999998754 5679999999999999999999976 3667778889999999999999997
Q ss_pred C-CCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000096 124 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 202 (2260)
Q Consensus 124 k-~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKL 202 (2260)
. +... ||++|+++++||||+.+++||+||++||+..|.||+|| +| .+.+.+|+|++.++++++ +.....|.
T Consensus 691 ~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke 762 (797)
T 4a2q_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKE 762 (797)
T ss_dssp ---CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHH
T ss_pred ccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHH
Confidence 7 4444 78999999999999999999999999999999999999 54 478999999999999999 77777787
Q ss_pred HHHHhhhc
Q 000096 203 GVANQSIT 210 (2260)
Q Consensus 203 dLAekVIq 210 (2260)
.++..++.
T Consensus 763 ~~~~~~i~ 770 (797)
T 4a2q_A 763 EMMNKAVE 770 (797)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777664
No 18
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.69 E-value=1.9e-16 Score=166.57 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=114.8
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|+.+|.++|... .+.++||||++...++.|..+|...|+.+..+||+++..+|.++++.|+.+... +|++|
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEec
Confidence 4467999999999843 578999999999999999999999999999999999999999999999876554 68899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAE 199 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERAr 199 (2260)
+++++|||++.+++||+||++|++..|.||+||++|.|+.. .+|.|++.. |...+..+.
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~ 147 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALE 147 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHH
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHH
Confidence 99999999999999999999999999999999999999764 566666654 334444433
No 19
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.69 E-value=7.4e-17 Score=202.04 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=93.8
Q ss_pred cccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhc------------CceEEEEeCCCCHHHHHHHHHHhh
Q 000096 58 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 58 sSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~Lrkr------------GIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
.++|+..|.++|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999998764 45799999999999999999999876 666777788899999999999997
Q ss_pred C-CCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000096 124 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 202 (2260)
Q Consensus 124 k-~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKL 202 (2260)
. +... +|++|+++++||||+.+++||+||++||+..|.||+|| ||.+.+.+|+|++.++++++.+ ....|.
T Consensus 691 ~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke 762 (936)
T 4a2w_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKE 762 (936)
T ss_dssp ---CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHH
T ss_pred ccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHH
Confidence 7 4444 78999999999999999999999999999999999999 5557888999999999999866 667777
Q ss_pred HHHHhhhcC
Q 000096 203 GVANQSITA 211 (2260)
Q Consensus 203 dLAekVIqa 211 (2260)
.++..++..
T Consensus 763 ~~~~~~i~~ 771 (936)
T 4a2w_A 763 EMMNKAVEK 771 (936)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777653
No 20
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.50 E-value=3.1e-18 Score=173.26 Aligned_cols=119 Identities=19% Similarity=0.304 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
..|+.+|.++|.. ..+.|+|||+++...++.|..+|...++.+..+||+++..+|..+++.|+.+... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 6699999999875 3568999999999999999999999999999999999999999999999765433 7889999
Q ss_pred cccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 139 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 139 GGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
+++|||++.+++||+||++|++..|.||+||++|.||+..+.+|
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 99999999999999999999999999999999999987665433
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.67 E-value=7.7e-16 Score=168.15 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=116.3
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
.....|...|.+++... .++|+|||+++...++.|.++|...++.+..+||+++..+|..+++.|+.+... +|++
T Consensus 232 ~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~ 306 (391)
T 1xti_A 232 LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVA 306 (391)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS---EEEE
T ss_pred cCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc---EEEE
Confidence 34567899999999865 678999999999999999999999999999999999999999999999876654 7889
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 200 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArr 200 (2260)
|+++++|+|+..+++||+||++|++..|.||+||++|.|++..+. .|++.. -+.+++..+..
T Consensus 307 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~~~ 368 (391)
T 1xti_A 307 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQD 368 (391)
T ss_dssp SCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSH-HHHHHHHHHHH
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEccc-chHHHHHHHHH
Confidence 999999999999999999999999999999999999999766544 444432 23444444443
No 22
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.62 E-value=1.1e-15 Score=169.22 Aligned_cols=124 Identities=19% Similarity=0.309 Sum_probs=110.8
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
..|+..|.+++... ...|+||||++...++.|.++|...++.+..+||+++..+|..+++.|+.+... +|++|++
T Consensus 261 ~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~ 335 (410)
T 2j0s_A 261 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDV 335 (410)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGG
T ss_pred HhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEECCh
Confidence 44899999998865 456999999999999999999999999999999999999999999999876554 7889999
Q ss_pred cccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 139 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 139 GGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
+++|||++.+++||+||++|++..|.||+||++|.|++. .+|.|++.+.
T Consensus 336 ~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 336 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 999999999999999999999999999999999999764 5566666553
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.61 E-value=7.9e-15 Score=161.50 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=112.7
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
+....|+..|..++... .+.|+||||++...++.|.++|...++.+..+||+++..+|..+++.|+.+... +|++
T Consensus 240 ~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~ 314 (400)
T 1s2m_A 240 VEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVC 314 (400)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEE
T ss_pred echhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc---EEEE
Confidence 44567999999998764 567999999999999999999999999999999999999999999999876554 7889
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
|+++++|+|+..+++||+||++|++..|.||+||++|.|+.. .+|.|+..+
T Consensus 315 T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~ 365 (400)
T 1s2m_A 315 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN 365 (400)
T ss_dssp SSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG
T ss_pred cCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccc
Confidence 999999999999999999999999999999999999999754 556667655
No 24
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.61 E-value=3.1e-15 Score=167.31 Aligned_cols=126 Identities=19% Similarity=0.258 Sum_probs=109.6
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
+..+.|+.+|.++|... .+.++||||+....++.|...|...++.+..+||+++..+|..+++.|+.+... +|++
T Consensus 10 ~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVa 84 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVA 84 (300)
T ss_dssp CCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEE
T ss_pred CCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEE
Confidence 34567999999999865 488999999999999999999999999999999999999999999999876555 7889
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
|+++++|||+..+++||+||++|++..|.||+||++|.|+. -.+|.|++..
T Consensus 85 T~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~ 135 (300)
T 3i32_A 85 TDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 135 (300)
T ss_dssp CSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSS
T ss_pred echhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChH
Confidence 99999999999999999999999999999999999999976 4566777665
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.60 E-value=4.8e-15 Score=160.83 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=107.8
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+..|..++... .+.++|||++....++.|.++|+..++.+..+||+++..+|.+++++|+.+... +|++|+
T Consensus 227 ~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~ 301 (395)
T 3pey_A 227 EADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK---VLITTN 301 (395)
T ss_dssp HHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC---EEEECG
T ss_pred hHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC---EEEECC
Confidence 356788888877644 568999999999999999999999999999999999999999999999876654 789999
Q ss_pred ccccccCCCccCeeEeeCCCC------ChhhhhhhcccccccCCcCcEEEEEEEe
Q 000096 138 AGGVGVNLQAADTVIIFDTDW------NPQVDLQAQARAHRIGQKRDVLVLRFET 186 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPW------NParDLQAIGRAHRIGQKKEVrVYRLIT 186 (2260)
++++|+|+..+++||+||++| ++..|.||+||++|.|++..+ |.|+.
T Consensus 302 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~ 354 (395)
T 3pey_A 302 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA--ISFVH 354 (395)
T ss_dssp GGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEE--EEEEC
T ss_pred hhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceE--EEEEe
Confidence 999999999999999999999 999999999999999975544 44444
No 26
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=166.40 Aligned_cols=124 Identities=20% Similarity=0.306 Sum_probs=98.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+..|..++... .+.++|||++....++.|.++|...++.+..+||+++..+|.++++.|+.+... +|++|+
T Consensus 264 ~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~ 338 (414)
T 3eiq_A 264 EEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR---VLITTD 338 (414)
T ss_dssp STTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------CEEECS
T ss_pred HHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc---EEEECC
Confidence 345899999988755 567999999999999999999999999999999999999999999999665433 688999
Q ss_pred ccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
++++|||+..+++||+||++||+..|.||+||++|.|+.. .+|.|++.+
T Consensus 339 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 339 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp SCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 9999999999999999999999999999999999999765 456666665
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.59 E-value=6.2e-15 Score=158.43 Aligned_cols=125 Identities=20% Similarity=0.277 Sum_probs=110.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|+..|.++|. ..+.++||||++...++.|.++|+..++.+..+||+++..+|.++++.|+.+... +|++|
T Consensus 222 ~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T 295 (367)
T 1hv8_A 222 NENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIAT 295 (367)
T ss_dssp CGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEEC
T ss_pred ChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 34567877777775 5678999999999999999999999999999999999999999999999876544 68899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
+++++|+|+..+++||+||++|++..+.||+||++|.|+...+ |.|+....
T Consensus 296 ~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~ 346 (367)
T 1hv8_A 296 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRRE 346 (367)
T ss_dssp TTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTS
T ss_pred ChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHH
Confidence 9999999999999999999999999999999999999987654 45555553
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.59 E-value=1.1e-14 Score=159.70 Aligned_cols=136 Identities=17% Similarity=0.252 Sum_probs=112.8
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+..|.+++... .+.|+||||+....++.|..+|...++.+..+||+++..+|.++++.|+.+... +|++|+
T Consensus 250 ~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~ 324 (412)
T 3fht_A 250 RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTN 324 (412)
T ss_dssp HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc---EEEEcC
Confidence 346888888888754 567999999999999999999999999999999999999999999999876655 789999
Q ss_pred ccccccCCCccCeeEeeCCCCCh------hhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000096 138 AGGVGVNLQAADTVIIFDTDWNP------QVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 201 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpPWNP------arDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrK 201 (2260)
++++|||+..+++||+||++|++ ..|.||+||++|.|+.. .+|.|+.. .-+..++..+.++
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECS-HHHHHHHHHHHHH
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcC-hhhHHHHHHHHHH
Confidence 99999999999999999999986 68999999999999654 44555533 2234444444443
No 29
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=179.28 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=113.2
Q ss_pred cccHHHHHHHHHHHhhc--C-CCeEEEEEcchhHHHHHHHHHhhc------CceEEEEeCC--------CCHHHHHHHHH
Q 000096 58 LCGKLEMLDRLLPKLKA--T-DHRVLFFSTMTRLLDVMEDYLTFK------QYRYLRLDGH--------TSGGDRGALID 120 (2260)
Q Consensus 58 sSGKLELLdrLLkKLke--n-GhKVLIFSQfTdtLDILED~Lrkr------GIkyvRLDGS--------TSqEERQeIID 120 (2260)
.+.|+..|.++|..... . +.|+||||+++.+++.|.++|... |+++..+||+ ++..+|.++++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 45788888888876443 2 789999999999999999999877 8999999999 99999999999
Q ss_pred HhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 000096 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 200 (2260)
Q Consensus 121 rFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArr 200 (2260)
+|+.+... +|++|+++++|||++.+++||+||++||+..|.||+||++|-| ..++.|...++.+...+.....
T Consensus 459 ~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~ 531 (699)
T 4gl2_A 459 KFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDF 531 (699)
T ss_dssp HHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHH
T ss_pred HHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHH
Confidence 99775544 6889999999999999999999999999999999999976554 4455556667766555555555
Q ss_pred HHHHHHhhhc
Q 000096 201 KLGVANQSIT 210 (2260)
Q Consensus 201 KLdLAekVIq 210 (2260)
+..++...+.
T Consensus 532 ~~~~~~~~~~ 541 (699)
T 4gl2_A 532 REKMMYKAIH 541 (699)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 30
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=160.90 Aligned_cols=126 Identities=24% Similarity=0.343 Sum_probs=110.3
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|...|.++|... ..+.++|||++....++.|.++|...++.+..+||+++..+|.+++++|+.+... +|++|
T Consensus 258 ~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT 333 (417)
T 2i4i_A 258 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 333 (417)
T ss_dssp CGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEEC
T ss_pred ccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEEC
Confidence 4567899999988764 4578999999999999999999999999999999999999999999999876655 78899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
+++++|||+..+++||+||++|++..|.||+||++|.|+. -.+|.|+...
T Consensus 334 ~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 383 (417)
T 2i4i_A 334 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNER 383 (417)
T ss_dssp HHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGG
T ss_pred ChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEccc
Confidence 9999999999999999999999999999999999999975 4556666543
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.54 E-value=5.4e-15 Score=157.57 Aligned_cols=117 Identities=18% Similarity=0.328 Sum_probs=100.3
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII 153 (2260)
..+.++|||+++...++.|.++|. .+..+||+++..+|.+++++|+.+... +|++|+++++|+|+..+++||+
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD---MLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECHHHHTTCCCCCBSEEEE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc---EEEEcCccccCCCccCCCEEEE
Confidence 467899999999999999998886 578899999999999999999876655 7889999999999999999999
Q ss_pred eCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000096 154 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 198 (2260)
Q Consensus 154 FDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERA 198 (2260)
||++|++..|.||+||++|.|++..+.+|.. ....+.+.|.+.+
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 9999999999999999999999888777766 4445555554443
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.54 E-value=7.6e-15 Score=174.43 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=83.6
Q ss_pred cccHHHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhcC----ceEEEEeC--------CCCHHHHHHHHHHhh
Q 000096 58 LCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQ----YRYLRLDG--------HTSGGDRGALIDKFN 123 (2260)
Q Consensus 58 sSGKLELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~LrkrG----IkyvRLDG--------STSqEERQeIIDrFN 123 (2260)
.+.|+..|.++|.... ..+.++|||++++..++.|.++|+..+ +++..++| +++..+|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 5789999999998764 357899999999999999999999888 89999954 999999999999997
Q ss_pred C-CCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHH
Q 000096 124 Q-QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 193 (2260)
Q Consensus 124 k-~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEK 193 (2260)
. +... +|++|+++++|||++.+++||+||++||+..|.||+|| +|. +...+|.|++.+++++.
T Consensus 458 ~~g~~~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 458 ASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ---CCS---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred hcCCcc---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 6 5544 58899999999999999999999999999999999999 885 66788999998877664
No 33
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.54 E-value=4.2e-14 Score=161.79 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=108.8
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|...|.++|... +.++|||++....++.|.++|...++.+..+||+++..+|.+++++|+.+... +|++|
T Consensus 284 ~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT 357 (434)
T 2db3_A 284 NKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK---VLIAT 357 (434)
T ss_dssp CGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS---EEEEC
T ss_pred CcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEc
Confidence 4456888888888754 44599999999999999999999999999999999999999999999876655 78999
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
+++++|||+..+++||+||++|++..|.||+||++|.|++. .+|.|++.
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G--~a~~~~~~ 406 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG--RATSFFDP 406 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCE--EEEEEECT
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCC--EEEEEEec
Confidence 99999999999999999999999999999999999999754 44555653
No 34
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.51 E-value=2.1e-15 Score=164.40 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccc
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 139 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAG 139 (2260)
.|+..|..++... .+.|+||||++...++.|.++|+..++.+..+||+++..+|.++++.|+.+... +|++|+++
T Consensus 245 ~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~ 319 (394)
T 1fuu_A 245 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLL 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc---EEEECChh
Confidence 4777777777654 467999999999999999999999999999999999999999999999665433 78899999
Q ss_pred ccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 140 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 140 GeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
++|+|++.+++||+||++|++..|.||+||++|.|++..+ |.|++.+
T Consensus 320 ~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 366 (394)
T 1fuu_A 320 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNE 366 (394)
T ss_dssp -------------------------------------------------
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceE--EEEEchh
Confidence 9999999999999999999999999999999999976654 4445444
No 35
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.50 E-value=5.3e-14 Score=161.83 Aligned_cols=134 Identities=12% Similarity=0.121 Sum_probs=114.1
Q ss_pred ccccHHHHHHHHHHHhhcC-CCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 57 RLCGKLEMLDRLLPKLKAT-DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLken-GhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
....|...+.+++..+... ++++|||+. ...++.|.++|...+.++..+||+++..+|.++++.|+.+... +|++
T Consensus 328 ~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~---vLv~ 403 (510)
T 2oca_A 328 GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI---IIVA 403 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC---EEEE
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC---EEEE
Confidence 3445777788888766555 456677776 8888889999999888999999999999999999999865544 5667
Q ss_pred c-cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcC-cEEEEEEEeCCCHHHHH
Q 000096 136 I-RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR-DVLVLRFETVQTVEEQV 194 (2260)
Q Consensus 136 T-RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKK-EVrVYRLITegTVEEKI 194 (2260)
| +++++|+|++.+++||+|+++|++..+.|++||+||.|+.+ .|.||.|+...++.+++
T Consensus 404 T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~ 464 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKS 464 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSS
T ss_pred EcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhh
Confidence 7 99999999999999999999999999999999999999987 79999999977755544
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.41 E-value=1e-12 Score=155.28 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=108.3
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 135 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS 135 (2260)
.....|+..|.++|... .+.++||||+.+..++.|.++|+..|+.+..+||+++..+|.++++.|..++.. +|++
T Consensus 218 ~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~---vlVa 292 (523)
T 1oyw_A 218 MEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVA 292 (523)
T ss_dssp EECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEE
T ss_pred EeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEE
Confidence 34456788888888653 678999999999999999999999999999999999999999999999877655 7889
Q ss_pred ccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEE
Q 000096 136 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 181 (2260)
Q Consensus 136 TRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrV 181 (2260)
|.+++.|||+.++++||+||++|++..|.|++||++|.|+...+.+
T Consensus 293 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 293 TVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp CTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred echhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999999999999999999999999998665544
No 37
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.40 E-value=4.8e-13 Score=157.76 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=99.3
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCce--------EEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCC
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYR--------YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 145 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIk--------yvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNL 145 (2260)
..+.|+||||++...++.|.++|...+.. +.+++|.++ ++|.+++++|++++..+.++|++|+++++|||+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 34689999999999999999999766543 778999876 379999999998777788899999999999999
Q ss_pred CccCeeEeeCCCCChhhhhhhcccccccCC---cCcEEEEEEE
Q 000096 146 QAADTVIIFDTDWNPQVDLQAQARAHRIGQ---KRDVLVLRFE 185 (2260)
Q Consensus 146 QaADhVIIFDpPWNParDLQAIGRAHRIGQ---KKEVrVYRLI 185 (2260)
+.+++||+|+++|++..|.|++||++|+|+ +..+.||.|+
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 999999999999999999999999999994 6678899887
No 38
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.39 E-value=1.1e-12 Score=152.74 Aligned_cols=119 Identities=15% Similarity=0.282 Sum_probs=101.5
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhc---CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 150 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~Lrkr---GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADh 150 (2260)
..+.++|||++....++.|..+|... ++.+..+||+++..+|.++++.|+.+... +|++|+++++|||+..+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCE
Confidence 45789999999999999999999876 99999999999999999999999776543 7889999999999999999
Q ss_pred eEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000096 151 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAE 199 (2260)
Q Consensus 151 VIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERAr 199 (2260)
||+||++|++..|.||+||++|.|+.. .++.|++.. |...++.+.
T Consensus 414 VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 414 VLQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVRELE 458 (563)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHHH
T ss_pred EEEECCCCchhhhhhhcCccccCCCCc--eEEEEEchh--HHHHHHHHH
Confidence 999999999999999999999999654 445555544 333444443
No 39
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=1.3e-12 Score=154.36 Aligned_cols=132 Identities=14% Similarity=0.290 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhh--cCCCeEEEEEcchhHHHHHHHHHhhc---CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 62 LEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 62 LELLdrLLkKLk--enGhKVLIFSQfTdtLDILED~Lrkr---GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
...+..++..+. ..+.++||||.....++.|..+|... ++.+..+||+++..+|.+++++|+.+... +|++|
T Consensus 272 ~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT 348 (579)
T 3sqw_A 272 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG---ILVCT 348 (579)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE---EEEEC
T ss_pred HHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCe---EEEEc
Confidence 344444444443 45789999999999999999999876 99999999999999999999999775543 78899
Q ss_pred cccccccCCCccCeeEeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 000096 137 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 200 (2260)
Q Consensus 137 RAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArr 200 (2260)
+++++|||+..+++||+||++|++..|.||+||++|.|+.. .++.|++.. |..+++.+.+
T Consensus 349 ~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l~~ 408 (579)
T 3sqw_A 349 DVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVRELED 408 (579)
T ss_dssp GGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHHHH
T ss_pred chhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCc--eEEEEEccc--HHHHHHHHHH
Confidence 99999999999999999999999999999999999999754 444455543 4444444433
No 40
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.36 E-value=8.5e-14 Score=159.27 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
..|+..|.+++... .+.++||||+....++.|..+|...++.+..+||+++..+|..+++.|+.+... +|++|++
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~---iLv~T~~ 392 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTNV 392 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc---EEEEccc
Confidence 46777777777643 457999999999999999999999999999999999999999999999765544 7899999
Q ss_pred cccccCCCccCeeEeeCCCCCh------hhhhhhcccccccCCcCcEE
Q 000096 139 GGVGVNLQAADTVIIFDTDWNP------QVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 139 GGeGLNLQaADhVIIFDpPWNP------arDLQAIGRAHRIGQKKEVr 180 (2260)
+++|||+..+++||+||++|++ ..|.||+||++|.|+...+.
T Consensus 393 ~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 393 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp ------------------------------------------------
T ss_pred cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 9999999999999999999976 68999999999999655443
No 41
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.34 E-value=3e-12 Score=154.18 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=97.6
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEee
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 154 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIF 154 (2260)
.+.++||||.....++.|..+|...|+.+..+||+++..+|.+++++|..+... +|++|.++++|||+.++++||+|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~ 342 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHH 342 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEES
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEe
Confidence 578999999999999999999999999999999999999999999999876655 78899999999999999999999
Q ss_pred CCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 155 DTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 155 DpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
|+++++..|.|++||++|.|+...+.+|
T Consensus 343 ~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 343 SMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp SCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999999986655544
No 42
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.33 E-value=3e-12 Score=143.45 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=106.1
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEE-EEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc--
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RLDGHTSGGDRGALIDKFNQQDSPFFIFLLS-- 135 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyv-RLDGSTSqEERQeIIDrFNk~DSei~VLLLS-- 135 (2260)
..|...|..+|.. .+.++||||+....++.|..+|...|+.+. .+||. +|. +++|+.+... +|++
T Consensus 238 ~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~---vLvat~ 305 (414)
T 3oiy_A 238 SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN---ILIGVQ 305 (414)
T ss_dssp SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS---EEEEEC
T ss_pred cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe---EEEEec
Confidence 3688888888876 358999999999999999999999999998 88884 444 9999876544 4566
Q ss_pred --ccccccccCCCc-cCeeEeeCCC--CChhhhhhhcccccccCCc--CcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000096 136 --IRAGGVGVNLQA-ADTVIIFDTD--WNPQVDLQAQARAHRIGQK--RDVLVLRFETVQTVEEQVRASAEHKLG 203 (2260)
Q Consensus 136 --TRAGGeGLNLQa-ADhVIIFDpP--WNParDLQAIGRAHRIGQK--KEVrVYRLITegTVEEKIyERArrKLd 203 (2260)
|+++++|||+.. +++||+||++ |++..|.||+||++|.|+. +.-.+|.|+ -|..+++.+.+++.
T Consensus 306 s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 306 AYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp CTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred CcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE----ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 9999999999999999975 567777777 23445555444443
No 43
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.29 E-value=2e-11 Score=148.91 Aligned_cols=126 Identities=18% Similarity=0.137 Sum_probs=110.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
..+++..|...|..+...+.++||||......+.|.++|...|+++..+||+++..+|.++++.|+.+... +|++|+
T Consensus 421 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~ 497 (664)
T 1c4o_A 421 TENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGIN 497 (664)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESC
T ss_pred ccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccC
Confidence 34577777777777777889999999999999999999999999999999999999999999999775544 788999
Q ss_pred ccccccCCCccCeeEeeCC-----CCChhhhhhhcccccccCCcCcEEEEEEEeCCC
Q 000096 138 AGGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDp-----PWNParDLQAIGRAHRIGQKKEVrVYRLITegT 189 (2260)
++++|+|+..+++||+||. +|++..|.||+||++|.| .-.++.|+...+
T Consensus 498 ~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 551 (664)
T 1c4o_A 498 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 551 (664)
T ss_dssp CCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred hhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC---CCEEEEEEcCCC
Confidence 9999999999999999998 899999999999999986 234666676654
No 44
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.28 E-value=1.8e-12 Score=151.68 Aligned_cols=120 Identities=21% Similarity=0.274 Sum_probs=86.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+..|..++... .+.|+||||+....++.|..+|...++.+..+||+++..+|..+++.|+.+... +|++|+
T Consensus 341 ~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~---VLVaT~ 415 (508)
T 3fho_A 341 EEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK---VLVTTN 415 (508)
T ss_dssp CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC---CCEECC
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEEeCC
Confidence 456778888877654 568999999999999999999999999999999999999999999999876655 788999
Q ss_pred ccccccCCCccCeeEeeCCC------CChhhhhhhcccccccCCcCcEEEE
Q 000096 138 AGGVGVNLQAADTVIIFDTD------WNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDpP------WNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
++++|+|+..+++||+||++ +++..+.|++||++|.|+...+.+|
T Consensus 416 ~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 416 VIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp -----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred hhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 99999999999999999999 7899999999999999976555444
No 45
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.27 E-value=3.7e-11 Score=146.48 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccc
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 138 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRA 138 (2260)
.+++..|...|..+...+.++||||......+.|.++|...|+++..+||.++..+|.++++.|+.+... +|++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 4567777777776667789999999999999999999999999999999999999999999999765544 7889999
Q ss_pred cccccCCCccCeeEeeCC-----CCChhhhhhhcccccccCCcCcEEEEEEEeCCCH
Q 000096 139 GGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190 (2260)
Q Consensus 139 GGeGLNLQaADhVIIFDp-----PWNParDLQAIGRAHRIGQKKEVrVYRLITegTV 190 (2260)
+++|+|+..+++||+||. ++++..|.||+||++|. +.-.++.|++..+.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITK 558 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCH
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCH
Confidence 999999999999999998 89999999999999997 24456667776653
No 46
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.9e-10 Score=146.41 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=105.6
Q ss_pred HHHHHHHHhhc-CCCeEEEEEcchhHHHHHHHHHhhcCce---------------------------------------E
Q 000096 64 MLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYR---------------------------------------Y 103 (2260)
Q Consensus 64 LLdrLLkKLke-nGhKVLIFSQfTdtLDILED~LrkrGIk---------------------------------------y 103 (2260)
.+..++..+.. ...++|||+..+..++.+..+|...++. +
T Consensus 330 ~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI 409 (1010)
T 2xgj_A 330 DIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 409 (1010)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCe
Confidence 34445554443 3469999999999999999998764442 7
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe----eCC----CCChhhhhhhcccccccCC
Q 000096 104 LRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDT----DWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 104 vRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII----FDp----PWNParDLQAIGRAHRIGQ 175 (2260)
..+||+++..+|..+++.|+.+... +|++|.++++|||++.+++||+ ||. +|++..|.|++||++|.|+
T Consensus 410 ~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~ 486 (1010)
T 2xgj_A 410 GIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL 486 (1010)
T ss_dssp EEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTT
T ss_pred eEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCC
Confidence 7899999999999999999876655 7889999999999999999999 999 9999999999999999999
Q ss_pred cCcEEEEEEEeCCC
Q 000096 176 KRDVLVLRFETVQT 189 (2260)
Q Consensus 176 KKEVrVYRLITegT 189 (2260)
....++|.|+....
T Consensus 487 d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 487 DDRGIVIMMIDEKM 500 (1010)
T ss_dssp CSSEEEEEEECSCC
T ss_pred CCceEEEEEECCCC
Confidence 88899999998664
No 47
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.05 E-value=7.3e-10 Score=133.93 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=96.4
Q ss_pred hhcCCCeEEEEEcchhHHHHHHHHHhhcC------------------------------------ceEEEEeCCCCHHHH
Q 000096 72 LKATDHRVLFFSTMTRLLDVMEDYLTFKQ------------------------------------YRYLRLDGHTSGGDR 115 (2260)
Q Consensus 72 LkenGhKVLIFSQfTdtLDILED~LrkrG------------------------------------IkyvRLDGSTSqEER 115 (2260)
+...+.++|||+.....++.+...|.... +.+..+||+++..+|
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 33467999999999999998888886431 247889999999999
Q ss_pred HHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe----eC-------CCCChhhhhhhcccccccCCcCcEEEEEE
Q 000096 116 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD-------TDWNPQVDLQAQARAHRIGQKRDVLVLRF 184 (2260)
Q Consensus 116 QeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII----FD-------pPWNParDLQAIGRAHRIGQKKEVrVYRL 184 (2260)
..+++.|..+... +|++|.+++.|||+.+.++||. || .+|++..+.||+||++|.|+.+...+|+|
T Consensus 328 ~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 404 (715)
T 2va8_A 328 DLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVV 404 (715)
T ss_dssp HHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 9999999776544 6889999999999999999999 99 89999999999999999999989999999
Q ss_pred EeCCC
Q 000096 185 ETVQT 189 (2260)
Q Consensus 185 ITegT 189 (2260)
++...
T Consensus 405 ~~~~~ 409 (715)
T 2va8_A 405 VRDKE 409 (715)
T ss_dssp CSCGG
T ss_pred eCCch
Confidence 87765
No 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.04 E-value=3.9e-10 Score=145.17 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
.+..++..++..+ ..+.+++|||+....++.+.++|+.. ++.+..+||.++..+|.+++++|+.+... +|++|.
T Consensus 797 ~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~---VLVaT~ 872 (1151)
T 2eyq_A 797 DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTT 872 (1151)
T ss_dssp CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESS
T ss_pred CHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEECC
Confidence 4555555666654 46889999999999999999999877 88999999999999999999999876554 788999
Q ss_pred ccccccCCCccCeeEeeCC-CCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 138 AGGVGVNLQAADTVIIFDT-DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 138 AGGeGLNLQaADhVIIFDp-PWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
++++|||+.++++||+++. .|++..+.|++||++|.|++ -++|.|+..+
T Consensus 873 v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~--g~~~ll~~~~ 922 (1151)
T 2eyq_A 873 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLTPHP 922 (1151)
T ss_dssp TTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEECCG
T ss_pred cceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCc--eEEEEEECCc
Confidence 9999999999999999998 69999999999999999864 4556566543
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.04 E-value=2.7e-10 Score=142.86 Aligned_cols=117 Identities=14% Similarity=0.162 Sum_probs=101.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.+|.++|..+...+.++||||......+.|...|...||++..|||.....+|..+...|+. .. +|++|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCC
Confidence 4579999999888776778899999999999999999999999999999999877777655555532 23 689999
Q ss_pred ccccccCCC--------ccCeeEeeCCCCChhhhhhhcccccccCCcCcE
Q 000096 138 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179 (2260)
Q Consensus 138 AGGeGLNLQ--------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEV 179 (2260)
.+|+|+|+. +..|||+||.|-++..|.||+||++|.|..-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 788999999999999999999999999975543
No 50
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.03 E-value=6.6e-10 Score=134.83 Aligned_cols=126 Identities=15% Similarity=0.046 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc------------------C---------------ceEEEE
Q 000096 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------Q---------------YRYLRL 106 (2260)
Q Consensus 60 GKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr------------------G---------------IkyvRL 106 (2260)
.++.++.+++ ..++++|||++.+..++.+...|... + ..+..+
T Consensus 225 ~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 225 SWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp STTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 3445555444 46799999999999988888887542 1 248889
Q ss_pred eCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe----eC----CCCChhhhhhhcccccccCCcCc
Q 000096 107 DGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD----TDWNPQVDLQAQARAHRIGQKRD 178 (2260)
Q Consensus 107 DGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII----FD----pPWNParDLQAIGRAHRIGQKKE 178 (2260)
||+++..+|..+++.|+.+... +|++|.+++.|+|+.+.++||. || .+|++..+.|++||++|.|+.+.
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~ 377 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV 377 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSE
T ss_pred cCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCC
Confidence 9999999999999999876544 6889999999999999999998 88 68999999999999999999889
Q ss_pred EEEEEEEeCCCHHH
Q 000096 179 VLVLRFETVQTVEE 192 (2260)
Q Consensus 179 VrVYRLITegTVEE 192 (2260)
-.+|.|++....+.
T Consensus 378 G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 378 GEGIIVSTSDDPRE 391 (720)
T ss_dssp EEEEEECSSSCHHH
T ss_pred ceEEEEecCccHHH
Confidence 99999999887554
No 51
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.02 E-value=4.7e-10 Score=135.76 Aligned_cols=125 Identities=19% Similarity=0.161 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhc------------------------------CceEEEEeCCC
Q 000096 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------QYRYLRLDGHT 110 (2260)
Q Consensus 61 KLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrkr------------------------------GIkyvRLDGST 110 (2260)
++..+.+++ ..+.++|||+..+..++.+...|... ++.+..+||++
T Consensus 231 ~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l 306 (702)
T 2p6r_A 231 FEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 306 (702)
T ss_dssp HHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred HHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCC
Confidence 444444444 46889999999999888888877532 13466799999
Q ss_pred CHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe----eC---CCCChhhhhhhcccccccCCcCcEEEEE
Q 000096 111 SGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD---TDWNPQVDLQAQARAHRIGQKRDVLVLR 183 (2260)
Q Consensus 111 SqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII----FD---pPWNParDLQAIGRAHRIGQKKEVrVYR 183 (2260)
+..+|..+++.|..+... +|++|.+++.|+|+.+.++||. || .+|++..+.||+||++|.|+.+...+|+
T Consensus 307 ~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 383 (702)
T 2p6r_A 307 LNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 383 (702)
T ss_dssp CHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 999999999999876544 6889999999999999999999 77 7899999999999999999999999999
Q ss_pred EEeCCCHHH
Q 000096 184 FETVQTVEE 192 (2260)
Q Consensus 184 LITegTVEE 192 (2260)
|++....+.
T Consensus 384 l~~~~~~~~ 392 (702)
T 2p6r_A 384 IVGKRDREI 392 (702)
T ss_dssp ECCGGGHHH
T ss_pred EecCccHHH
Confidence 998876543
No 52
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.02 E-value=4.4e-10 Score=144.28 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhcC-CCeEEEEEcchhHHHHHHHHHhhcCce--------------------------------------
Q 000096 62 LEMLDRLLPKLKAT-DHRVLFFSTMTRLLDVMEDYLTFKQYR-------------------------------------- 102 (2260)
Q Consensus 62 LELLdrLLkKLken-GhKVLIFSQfTdtLDILED~LrkrGIk-------------------------------------- 102 (2260)
...+..++..+... +.++|||+.....++.+..+|...++.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 34444555554444 469999999999999999998654433
Q ss_pred -EEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhh--------hhhhccccccc
Q 000096 103 -YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV--------DLQAQARAHRI 173 (2260)
Q Consensus 103 -yvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNPar--------DLQAIGRAHRI 173 (2260)
+..+||+++..+|..+++.|+.+... +|++|.++++|||+.++++||+|+.+||+.. |.|++||++|.
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~ 582 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRR 582 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCS
T ss_pred CeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCC
Confidence 68899999999999999999876655 7889999999999999999999999887765 99999999999
Q ss_pred CCcCcEEEEEEEeCCCHHHH
Q 000096 174 GQKRDVLVLRFETVQTVEEQ 193 (2260)
Q Consensus 174 GQKKEVrVYRLITegTVEEK 193 (2260)
|+....++|.|+.....+..
T Consensus 583 G~d~~G~~ill~~~~~~~~~ 602 (1108)
T 3l9o_A 583 GLDDRGIVIMMIDEKMEPQV 602 (1108)
T ss_dssp SSCSSEEEEEEECCCCCHHH
T ss_pred CCCCceEEEEEecCCcCHHH
Confidence 99999999999987754433
No 53
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.98 E-value=1.1e-09 Score=136.01 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=101.5
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|+.+|.++|......++++||||.+....+.|...|...|+++..|+|.....+|..+...|+. .. ++++|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVAT 529 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIAT 529 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEc
Confidence 34579999999998877788999999999999999999999999999999998555555545555633 23 79999
Q ss_pred cccccccCCC--------ccCeeEeeCCCCChhhhhhhcccccccCCcCcEE
Q 000096 137 RAGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180 (2260)
Q Consensus 137 RAGGeGLNLQ--------aADhVIIFDpPWNParDLQAIGRAHRIGQKKEVr 180 (2260)
+.+|+|+++. +..+||+||.|-++..|.||+||++|.|..-...
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~ 581 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESI 581 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEE
Confidence 9999999997 6679999999999999999999999999766543
No 54
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.96 E-value=3.3e-10 Score=131.34 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=78.2
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII 153 (2260)
..+.++||||+....++.+.+.|+..++++..+|| .+|.++++.|+.+... +|++|+++++|||+. +++||+
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEe
Confidence 35789999999999999999999999999999999 4788999999776555 788999999999999 999985
Q ss_pred -------------------eCCCCChhhhhhhcccccccCC
Q 000096 154 -------------------FDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 154 -------------------FDpPWNParDLQAIGRAHRIGQ 175 (2260)
||.++++..|.||+||++|.|.
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8999999999999999999853
No 55
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.94 E-value=8.9e-10 Score=135.27 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=99.4
Q ss_pred hcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeE
Q 000096 73 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 152 (2260)
Q Consensus 73 kenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVI 152 (2260)
...+.++||||+....++.|..+|+..++++..+|| .+|.++++.|+.+... +|++|+++++|||+. +++||
T Consensus 407 ~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 TDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp HSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEE
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEE
Confidence 346889999999999999999999999999999999 3899999999776655 788999999999999 99999
Q ss_pred e--------------------eCCCCChhhhhhhccccccc-CCcCcEEEEEEEe-CCCHHHHHHHHHHHHHHHHHhhhc
Q 000096 153 I--------------------FDTDWNPQVDLQAQARAHRI-GQKRDVLVLRFET-VQTVEEQVRASAEHKLGVANQSIT 210 (2260)
Q Consensus 153 I--------------------FDpPWNParDLQAIGRAHRI-GQKKEVrVYRLIT-egTVEEKIyERArrKLdLAekVIq 210 (2260)
+ ||.+.++..|.||+||++|. |+... +|.|+. ...-|..++..+..+..+...-+.
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~--ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD--EYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE--EEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE--EEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 7 67888889999999999999 44433 333432 122233444444555544444333
Q ss_pred CC
Q 000096 211 AG 212 (2260)
Q Consensus 211 aG 212 (2260)
.|
T Consensus 557 ~g 558 (673)
T 2wv9_A 557 NG 558 (673)
T ss_dssp TT
T ss_pred ch
Confidence 33
No 56
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.93 E-value=1.6e-09 Score=135.85 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=104.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
....|+.+|.++|..+...++.|||||.+....+.|...|...||++..|+|.....+|..+.+.|+.+ . ++++|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIAT 496 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIAT 496 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEec
Confidence 346799999999987777889999999999999999999999999999999998877777777778543 3 78999
Q ss_pred cccccccCCCcc-------------------------------------CeeEeeCCCCChhhhhhhcccccccCCcCcE
Q 000096 137 RAGGVGVNLQAA-------------------------------------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179 (2260)
Q Consensus 137 RAGGeGLNLQaA-------------------------------------DhVIIFDpPWNParDLQAIGRAHRIGQKKEV 179 (2260)
+.+|+|+|+... .|||+||.|-++..|.|++||++|.|..-..
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999863 6999999999999999999999999976544
Q ss_pred EE
Q 000096 180 LV 181 (2260)
Q Consensus 180 rV 181 (2260)
..
T Consensus 577 ~~ 578 (853)
T 2fsf_A 577 RF 578 (853)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 57
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.93 E-value=1.4e-09 Score=133.79 Aligned_cols=109 Identities=18% Similarity=0.239 Sum_probs=95.7
Q ss_pred CeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCC
Q 000096 77 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 156 (2260)
Q Consensus 77 hKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDp 156 (2260)
...|||+.....++.|..+|...++.+..+||+++..+|.++++.|+.++..+. +|++|+++++|||+ .+++||+|+.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCS
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCc
Confidence 445888999999999999999999999999999999999999999987333344 68899999999999 9999999999
Q ss_pred --------------CCChhhhhhhcccccccCCc-CcEEEEEEEeC
Q 000096 157 --------------DWNPQVDLQAQARAHRIGQK-RDVLVLRFETV 187 (2260)
Q Consensus 157 --------------PWNParDLQAIGRAHRIGQK-KEVrVYRLITe 187 (2260)
+++...+.||+||++|.|+. ..-.||+|...
T Consensus 399 ~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 399 IKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp BC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 45777777544
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.92 E-value=9.4e-10 Score=127.59 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=85.9
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII 153 (2260)
..+.++|||++....++.|..+|+..++.+..+||.+ |.++++.|+.+... +|++|+++++|||+.. ++||+
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEE
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEE
Confidence 3467999999999999999999999999999999964 56799999776555 7899999999999999 99999
Q ss_pred eC--------------------CCCChhhhhhhcccccccCCcC
Q 000096 154 FD--------------------TDWNPQVDLQAQARAHRIGQKR 177 (2260)
Q Consensus 154 FD--------------------pPWNParDLQAIGRAHRIGQKK 177 (2260)
|| .+.+...|.||+||++|.|...
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 98 8899999999999999999733
No 59
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.88 E-value=7.6e-10 Score=128.82 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=88.1
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe-
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 153 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII- 153 (2260)
.+.++|||++....++.|..+|+..++.+..+||. +|.++++.|+.+... +|++|+++++|||+.. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 47899999999999999999999999999999994 788899999766555 7889999999999999 99998
Q ss_pred -------------------eCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 154 -------------------FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 154 -------------------FDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
||.++++..|.||+||++|.|.. .-.+|.|+...
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 23445566654
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.88 E-value=1.4e-09 Score=132.19 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=96.4
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCee--
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV-- 151 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhV-- 151 (2260)
..+.++|||++....++.|.++|+..++++..|||. +|.+++++|+.+... +|++|+++++|||+. +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEE
Confidence 357899999999999999999999999999999984 788999999776655 789999999999996 8888
Q ss_pred ------------------EeeCCCCChhhhhhhcccccccCCcCcEEEEEEEeCC-CHHHHHHHHHHHHHHH
Q 000096 152 ------------------IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ-TVEEQVRASAEHKLGV 204 (2260)
Q Consensus 152 ------------------IIFDpPWNParDLQAIGRAHRIGQKKEVrVYRLITeg-TVEEKIyERArrKLdL 204 (2260)
|+||.|.++..|.||+||++|.|..+. .+|.|++.. .-|...+..+..++.+
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~~~~~~d~~~l~~le~~i~l 495 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSGDPLKNDEDHAHWTEAKMLL 495 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCCCCCTTCHHHHHHHHHH
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEccCCchhhHHHHHHHHhHhcc
Confidence 777778888999999999999986443 356666521 1233344444444433
No 61
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.87 E-value=5e-09 Score=133.40 Aligned_cols=132 Identities=16% Similarity=0.064 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCc-------------------------------------
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY------------------------------------- 101 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGI------------------------------------- 101 (2260)
..++..|.++|.. ....++|||+.....++.+..+|...++
T Consensus 321 ~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 321 KKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp TTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 3456666666653 2457999999999999999999976655
Q ss_pred --eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCC---------Chhhhhhhcccc
Q 000096 102 --RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW---------NPQVDLQAQARA 170 (2260)
Q Consensus 102 --kyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPW---------NParDLQAIGRA 170 (2260)
.+..+||+++..+|..+++.|+.+... +|++|.++++|||+.. .+||+++.++ ++..|.|++||+
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRA 474 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRA 474 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGG
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccc
Confidence 478999999999999999999877655 7899999999999999 6666655554 899999999999
Q ss_pred cccCCcCcEEEEEEEeCCCHHHHHHH
Q 000096 171 HRIGQKRDVLVLRFETVQTVEEQVRA 196 (2260)
Q Consensus 171 HRIGQKKEVrVYRLITegTVEEKIyE 196 (2260)
+|.|+....++|.++..+..+..++.
T Consensus 475 GR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 475 GRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp CCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred ccCCCCcceEEEEecCCCcchHHHHH
Confidence 99999999999988876666655544
No 62
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.87 E-value=1e-08 Score=129.42 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=102.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccc
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 137 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTR 137 (2260)
...|+.+|.++|......+++|||||.+....+.|...|...||++..|+|.....+|..+.+.|+.+ . ++++|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 35699999999988777899999999999999999999999999999999998766666666777432 3 688999
Q ss_pred ccccccCCCcc----------------------------------------------------CeeEeeCCCCChhhhhh
Q 000096 138 AGGVGVNLQAA----------------------------------------------------DTVIIFDTDWNPQVDLQ 165 (2260)
Q Consensus 138 AGGeGLNLQaA----------------------------------------------------DhVIIFDpPWNParDLQ 165 (2260)
.+|+|+|+... .|||+||.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999863 59999999999999999
Q ss_pred hcccccccCCcCcEE
Q 000096 166 AQARAHRIGQKRDVL 180 (2260)
Q Consensus 166 AIGRAHRIGQKKEVr 180 (2260)
++||++|.|..-...
T Consensus 597 r~GRTGRqGdpG~s~ 611 (922)
T 1nkt_A 597 LRGRSGRQGDPGESR 611 (922)
T ss_dssp HHHTSSGGGCCEEEE
T ss_pred HhcccccCCCCeeEE
Confidence 999999999755433
No 63
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.84 E-value=8.2e-10 Score=137.73 Aligned_cols=121 Identities=14% Similarity=0.219 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcch--------hHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHhhCCCC
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMT--------RLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDS 127 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfT--------dtLDILED~Lrk---rGIkyvRLDGSTSqEERQeIIDrFNk~DS 127 (2260)
..+...+...+.+....+++++|||... ..++.+.+.|.. .++.+..+||+++..+|.+++++|+++..
T Consensus 561 ~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~ 640 (780)
T 1gm5_A 561 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRY 640 (780)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSS
T ss_pred cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCC
Confidence 3455666667766667889999999865 346777788876 47889999999999999999999977655
Q ss_pred CeEEEEEcccccccccCCCccCeeEeeCCCC-ChhhhhhhcccccccCCcCcEEEE
Q 000096 128 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 128 ei~VLLLSTRAGGeGLNLQaADhVIIFDpPW-NParDLQAIGRAHRIGQKKEVrVY 182 (2260)
. +|++|+++++|+|+.++++||+||.++ +...+.|++||++|.|+...+.++
T Consensus 641 ~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 641 D---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp S---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred e---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 5 688999999999999999999999985 788889999999999976654433
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.82 E-value=3e-09 Score=123.01 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=87.3
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCe---
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT--- 150 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADh--- 150 (2260)
..+.++|||++....++.+.+.|+..++++..+||. +|.+++++|+.+... +|++|.++++|||+. .++
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEe
Confidence 346799999999999999999999999999999996 688999999877655 789999999999998 544
Q ss_pred --------------eEeeCCCCChhhhhhhcccccccCCcC-cEEEE
Q 000096 151 --------------VIIFDTDWNPQVDLQAQARAHRIGQKR-DVLVL 182 (2260)
Q Consensus 151 --------------VIIFDpPWNParDLQAIGRAHRIGQKK-EVrVY 182 (2260)
||+|+.+++...|.|++||++|.|... .+.+|
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 678899999999999999999999544 44444
No 65
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.79 E-value=3.6e-09 Score=135.07 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=99.6
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc---
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS--- 135 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS--- 135 (2260)
..|...|.++|..+ +.++||||+....++.|.++|+.. +++..+||++ .+++++|+.+... | |++
T Consensus 261 ~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~--V-LVaTas 328 (1054)
T 1gku_B 261 DESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEID--H-LIGTAH 328 (1054)
T ss_dssp CCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCS--E-EEEECC
T ss_pred hhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCc--E-EEEecC
Confidence 56778888888654 678999999999999999999888 9999999987 3788999776544 4 555
Q ss_pred -ccccccccCCCcc-CeeEeeCCC--------------------------------------------------------
Q 000096 136 -IRAGGVGVNLQAA-DTVIIFDTD-------------------------------------------------------- 157 (2260)
Q Consensus 136 -TRAGGeGLNLQaA-DhVIIFDpP-------------------------------------------------------- 157 (2260)
|+++++|||+..+ ++||+||.+
T Consensus 329 ~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (1054)
T 1gku_B 329 YYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKER 408 (1054)
T ss_dssp ------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSC
T ss_pred CCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999995 999999999
Q ss_pred ---------------CChhhhhhhcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000096 158 ---------------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 204 (2260)
Q Consensus 158 ---------------WNParDLQAIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdL 204 (2260)
.+...|.||+||++|.|.....+.+.|+..+ |..++..+.+++..
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 409 PQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp CSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHHHT
T ss_pred ccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHHhh
Confidence 7899999999999998876432333334444 45566666665544
No 66
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.78 E-value=3.3e-09 Score=131.87 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=95.6
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhh-----------cCceEEEEeCCCCHHHHHHHHHHhhCC---CCCeEEEEEcccccc
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTF-----------KQYRYLRLDGHTSGGDRGALIDKFNQQ---DSPFFIFLLSIRAGG 140 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~Lrk-----------rGIkyvRLDGSTSqEERQeIIDrFNk~---DSei~VLLLSTRAGG 140 (2260)
.+.++|||+.....++.+.++|.. .++.+..+||+++..+|.++++.|... ... .-+|++|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~-~kVlVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG-RKVVISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC-EEEEEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc-eEEEEeCcHHH
Confidence 578999999999999999998864 688999999999999999999999511 233 34688999999
Q ss_pred cccCCCccCeeEeeCC------------------CCChhhhhhhcccccccCCcCcEEEEEEEeCCCH
Q 000096 141 VGVNLQAADTVIIFDT------------------DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 190 (2260)
Q Consensus 141 eGLNLQaADhVIIFDp------------------PWNParDLQAIGRAHRIGQKKEVrVYRLITegTV 190 (2260)
+|||+.+.++||.|+. +.+...|.||+||++|. +.-.+|+|++....
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999777 88899999999999998 46678888875544
No 67
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.72 E-value=1.3e-08 Score=131.01 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEE-EEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc--
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RLDGHTSGGDRGALIDKFNQQDSPFFIFLLS-- 135 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyv-RLDGSTSqEERQeIIDrFNk~DSei~VLLLS-- 135 (2260)
..|...|.++|..+ +.++|||++....++.|..+|...|+.+. .+|| +|.+ +++|+.+... +|++
T Consensus 295 ~~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~---VLVata 362 (1104)
T 4ddu_A 295 SRSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQ 362 (1104)
T ss_dssp CCCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCS---EEEEET
T ss_pred cCHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCC---EEEEec
Confidence 36888888888763 48999999999999999999999999998 9998 3555 9999876655 5666
Q ss_pred --ccccccccCCCc-cCeeEeeCCCC
Q 000096 136 --IRAGGVGVNLQA-ADTVIIFDTDW 158 (2260)
Q Consensus 136 --TRAGGeGLNLQa-ADhVIIFDpPW 158 (2260)
|+++++|||+.+ +++||+||+|-
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999997
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.63 E-value=7.3e-08 Score=119.01 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=85.2
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeE--
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI-- 152 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVI-- 152 (2260)
.+.++|||++....++.|.++|+..++.+..+||++++.+ |.+... -+|++|+++++|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEec
Confidence 5789999999999999999999999999999999999764 323222 4788999999999986 99988
Q ss_pred --------eeC-----------CCCChhhhhhhcccccccCCcCcEEEEEEEeCCCHH
Q 000096 153 --------IFD-----------TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 191 (2260)
Q Consensus 153 --------IFD-----------pPWNParDLQAIGRAHRIGQKKEVrVYRLITegTVE 191 (2260)
+|| .|.+...|.||+||++| |... . |+|++.+..+
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e~~ 517 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGERP 517 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCCBC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecchhh
Confidence 677 77788999999999999 6543 2 7888876544
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.97 E-value=2.3e-05 Score=101.01 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=84.8
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcC------------ceE-EEEeCC----------C----------CH---------
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQ------------YRY-LRLDGH----------T----------SG--------- 112 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrG------------Iky-vRLDGS----------T----------Sq--------- 112 (2260)
.+.|+||||.+...+..+.+.|...+ +++ +.++|. + +.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 35689999999999999998886543 555 445543 1 11
Q ss_pred --------------------HHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccc
Q 000096 113 --------------------GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR 172 (2260)
Q Consensus 113 --------------------EERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHR 172 (2260)
..|..++++|..+... +|++++...+|+|.... +++++|.+...+.++||+||+.|
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~---ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR 691 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID---LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNR 691 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS---EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe---EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCc
Confidence 1488899999776544 67788999999999999 67899999999999999999999
Q ss_pred cCCc--CcEEEEEEEe
Q 000096 173 IGQK--RDVLVLRFET 186 (2260)
Q Consensus 173 IGQK--KEVrVYRLIT 186 (2260)
.+.. ....|+.|+.
T Consensus 692 ~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 692 IYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCCTTCCSEEEEESSC
T ss_pred CCCCCCCcEEEEEccc
Confidence 9863 4477777763
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.87 E-value=3.5e-05 Score=103.60 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=87.9
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhh-------------------------------------cCceEEEEeCCCCHHHHHH
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTF-------------------------------------KQYRYLRLDGHTSGGDRGA 117 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~Lrk-------------------------------------rGIkyvRLDGSTSqEERQe 117 (2260)
.++++|||+..+..+..+..+|.. ....+...||+++..+|..
T Consensus 316 ~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~ 395 (1724)
T 4f92_B 316 GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTL 395 (1724)
T ss_dssp SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHH
Confidence 467899999988765555444421 1123678899999999999
Q ss_pred HHHHhhCCCCCeEEEEEcccccccccCCCccCeeEe----eCCC------CChhhhhhhcccccccCCcCcEEEEEEEeC
Q 000096 118 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDTD------WNPQVDLQAQARAHRIGQKRDVLVLRFETV 187 (2260)
Q Consensus 118 IIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII----FDpP------WNParDLQAIGRAHRIGQKKEVrVYRLITe 187 (2260)
+.+.|+++.-. +|++|.+++.|+||.+.+.||. ||+. ..+..+.|++||++|.|....-.+|.+...
T Consensus 396 vE~~F~~G~i~---vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 396 VEDLFADKHIQ---VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HHHHHHTTCCC---EEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HHHHHHCCCCe---EEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 99999876655 6889999999999998777763 6553 468899999999999998777777767766
Q ss_pred CCHH
Q 000096 188 QTVE 191 (2260)
Q Consensus 188 gTVE 191 (2260)
+..+
T Consensus 473 ~~~~ 476 (1724)
T 4f92_B 473 GELQ 476 (1724)
T ss_dssp TTCC
T ss_pred hhHH
Confidence 6544
No 71
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.70 E-value=6.5e-05 Score=101.06 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=85.6
Q ss_pred cCCCeEEEEEcchhHHHHHHHHHhh----------------------------------cCceEEEEeCCCCHHHHHHHH
Q 000096 74 ATDHRVLFFSTMTRLLDVMEDYLTF----------------------------------KQYRYLRLDGHTSGGDRGALI 119 (2260)
Q Consensus 74 enGhKVLIFSQfTdtLDILED~Lrk----------------------------------rGIkyvRLDGSTSqEERQeII 119 (2260)
..++.+|||+..+..+..+...|.. ....+..+||+++..+|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 4568899999998876655443311 023467899999999999999
Q ss_pred HHhhCCCCCeEEEEEcccccccccCCCccCeeEe----eC------CCCChhhhhhhcccccccCCcCcEEEEEEEeCC
Q 000096 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD------TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 188 (2260)
Q Consensus 120 DrFNk~DSei~VLLLSTRAGGeGLNLQaADhVII----FD------pPWNParDLQAIGRAHRIGQKKEVrVYRLITeg 188 (2260)
+.|.++.-. +|++|..++.|+||.....||. || .+.++..|.|++||++|.|....-.+|.|+...
T Consensus 1233 ~lF~~G~i~---VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1233 QLFSSGAIQ---VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp HHHHHTSBC---EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred HHHHCCCCe---EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 999876655 6889999999999997666662 32 245788999999999999997777777666543
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.15 E-value=0.012 Score=70.72 Aligned_cols=92 Identities=11% Similarity=0.196 Sum_probs=55.6
Q ss_pred HHHHHHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccccc
Q 000096 63 EMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 141 (2260)
Q Consensus 63 ELLdrLLkKLk-enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGe 141 (2260)
..+.++|..+. ..+.++|||+.+...++.+.+.|.. +. +.+.|.. ..|.+++++|+.+ .. -.|.+.+....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~-il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KY-LVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CC-EEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-Ce-EEEEEecCceec
Confidence 34455554443 4567999999999999999888864 33 3455654 5799999999763 22 122337899999
Q ss_pred ccCCCc----cCeeEeeCCCCChh
Q 000096 142 GVNLQA----ADTVIIFDTDWNPQ 161 (2260)
Q Consensus 142 GLNLQa----ADhVIIFDpPWNPa 161 (2260)
|||+.+ +.+||++.+|+-+.
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ---------CEEEEEEESCCCCCT
T ss_pred ceecCCCcccccEEEEECCCCCCC
Confidence 999997 89999999997544
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=94.59 E-value=0.08 Score=68.53 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=95.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHh----------------------------------------
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT---------------------------------------- 97 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lr---------------------------------------- 97 (2260)
...|+.++.+-+......|+-|||+|.+...-++|..+|+
T Consensus 425 ~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQ 504 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccc
Confidence 3578999888888888899999999999999999999888
Q ss_pred ------------------------------------hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccccc
Q 000096 98 ------------------------------------FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 141 (2260)
Q Consensus 98 ------------------------------------krGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGe 141 (2260)
..||++-.|+.... +.-.++|.+= +... .+-++|..+|+
T Consensus 505 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h-e~EAeIIAqA--G~~G--aVTIATNMAGR 579 (997)
T 2ipc_A 505 LKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH-AREAEIVAQA--GRSK--TVTIATNMAGR 579 (997)
T ss_dssp CSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH-HHHHHHHHTT--TSTT--CEEEECSSTTT
T ss_pred ccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch-HHHHHHHHhc--CCCC--eEEEEecccCC
Confidence 67888888887643 3334556553 3222 36788999999
Q ss_pred ccCCCcc-------------------C-----------------------------------------------------
Q 000096 142 GVNLQAA-------------------D----------------------------------------------------- 149 (2260)
Q Consensus 142 GLNLQaA-------------------D----------------------------------------------------- 149 (2260)
|-|+.-. +
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 9997643 2
Q ss_pred --eeEeeCCCCChhhhhhhcccccccCCcCcEEEE
Q 000096 150 --TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 182 (2260)
Q Consensus 150 --hVIIFDpPWNParDLQAIGRAHRIGQKKEVrVY 182 (2260)
|||--..+-+-..+.|.-||++|.|..-.-+.|
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 899999999999999999999999987766655
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=90.13 E-value=0.58 Score=57.72 Aligned_cols=88 Identities=10% Similarity=0.206 Sum_probs=53.5
Q ss_pred HHHHHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc--cccc
Q 000096 64 MLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI--RAGG 140 (2260)
Q Consensus 64 LLdrLLkKLk-enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST--RAGG 140 (2260)
.+.+.|..+. ..+.++|||+.+...++.+.++|+ .+..- ..-+++..+|..++++|. .... +|+++ ....
T Consensus 435 ~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~---vL~~v~~gsf~ 507 (620)
T 4a15_A 435 RMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG---TIFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC---EEEEETTSCC-
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc---EEEEEecCcee
Confidence 3444444333 346679999999898888888876 23322 333444568999999997 3333 45554 5788
Q ss_pred cccCCCc--cCeeEeeCCCC
Q 000096 141 VGVNLQA--ADTVIIFDTDW 158 (2260)
Q Consensus 141 eGLNLQa--ADhVIIFDpPW 158 (2260)
+|||+.+ +..||+.-+||
T Consensus 508 EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp -------CCCCEEEESSCCC
T ss_pred ccccCCCCceEEEEEEcCCC
Confidence 9999995 78999988876
No 75
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=69.98 E-value=14 Score=41.90 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=68.1
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk---rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
-.-+||-....-.+..+...+.++||.+.....+.-+.+.|+. .++++..++|+.+..+|...+..+..++ +.|+
T Consensus 44 pTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Ii 121 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHIL 121 (414)
T ss_dssp CSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEE
Confidence 3458998755444444446788999999999988877777766 5889999999999988888888875543 3466
Q ss_pred EEccccccc---ccCCCccCeeEe
Q 000096 133 LLSIRAGGV---GVNLQAADTVII 153 (2260)
Q Consensus 133 LLSTRAGGe---GLNLQaADhVII 153 (2260)
+.+....-. -+++...++||+
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred EECHHHHHHHHHHhccccccEEEE
Confidence 666554421 145556666665
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=66.57 E-value=15 Score=47.05 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=69.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHH----HHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 58 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME----DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 58 sSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILE----D~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
-|||-......+......+.++||.+.....+.-+. .++...++++..++|+++..+|..+++.+..+. +.|++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvV 476 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVI 476 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEE
Confidence 489987665554444456789999998877555444 444455899999999999999999999886554 44666
Q ss_pred EcccccccccCCCccCeeEeeCCC
Q 000096 134 LSIRAGGVGVNLQAADTVIIFDTD 157 (2260)
Q Consensus 134 LSTRAGGeGLNLQaADhVIIFDpP 157 (2260)
.+.......+++...+.||+=+-+
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCC
T ss_pred ECHHHHhhhhhccCCceEEecccc
Confidence 665555556778888877774433
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=54.99 E-value=34 Score=41.35 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc--cc
Q 000096 62 LEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI--RA 138 (2260)
Q Consensus 62 LELLdrLLkKLk-enGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST--RA 138 (2260)
+..|.+.|..+. ..+.++|||+.+...++.+.+. .+++++ +.+... .+..+++.|+.... - +|+++ ..
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~-~q~~~~--~~~~~~~~~~~~~~--~-vl~~v~gg~ 448 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKY-VESEDS--SVEDLYSAISANNK--V-LIGSVGKGK 448 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEE-ECCSSC--CHHHHHHHTTSSSS--C-EEEEESSCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEE-EcCCCC--CHHHHHHHHHhcCC--e-EEEEEecce
Confidence 344555554443 4567899999888888777763 344433 333221 25678888853332 2 45554 68
Q ss_pred cccccCCC-----ccCeeEeeCCCCChh
Q 000096 139 GGVGVNLQ-----AADTVIIFDTDWNPQ 161 (2260)
Q Consensus 139 GGeGLNLQ-----aADhVIIFDpPWNPa 161 (2260)
..+|||+. .+..||+.-+|+-+.
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPfp~~ 476 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPYPPP 476 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCCCCC
T ss_pred ecccccccccCCcceeEEEEEcCCCCCC
Confidence 88999999 488999998887433
No 78
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=53.55 E-value=47 Score=34.97 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH
Q 000096 59 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 96 (2260)
Q Consensus 59 SGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L 96 (2260)
..++.+..+|+.+....|+||+|+|.....++.|-+.|
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~L 59 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEAL 59 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999
No 79
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=52.91 E-value=32 Score=45.53 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=72.1
Q ss_pred cccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 56 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 56 IRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk---rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
..-|||-.+..-.+..+...+.++||.+..+..+.-+.+.|+. .++++..++|+++..+|...+..+..++. .|+
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~--~Il 178 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY--HIL 178 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCC--SEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCC--CEE
Confidence 3458999877666655567789999999999998888888876 57899999999999888888888866544 466
Q ss_pred EEccccccc---ccCCCccCeeEeeC
Q 000096 133 LLSIRAGGV---GVNLQAADTVIIFD 155 (2260)
Q Consensus 133 LLSTRAGGe---GLNLQaADhVIIFD 155 (2260)
+.++...-. -+++...++||+=+
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred EECHHHHHHHHHhhcccCcCEEEEeC
Confidence 666544321 14456677776633
No 80
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=47.06 E-value=55 Score=43.53 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=69.0
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L----rkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
.-+||-......+..+...+.++||.+..+..+.-+.+.| ...++++..++|..+..++...+..+..+. +.|+
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIv 710 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDIL 710 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEE
Confidence 3488987766555445567889999999887665554444 344688999999999999999998886544 4466
Q ss_pred EEcccccccccCCCccCeeEe
Q 000096 133 LLSIRAGGVGVNLQAADTVII 153 (2260)
Q Consensus 133 LLSTRAGGeGLNLQaADhVII 153 (2260)
+.+.......+++...++||+
T Consensus 711 V~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEE
T ss_pred EECHHHHhCCccccccceEEE
Confidence 777666666677777777666
No 81
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=46.15 E-value=61 Score=36.01 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHhh-cCCCeEEEEEcchhHHHHHHHHHhh-cCc---eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEE
Q 000096 58 LCGKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTF-KQY---RYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 132 (2260)
Q Consensus 58 sSGKLELLdrLLkKLk-enGhKVLIFSQfTdtLDILED~Lrk-rGI---kyvRLDGSTSqEERQeIIDrFNk~DSei~VL 132 (2260)
-+||-.....++..+. ..+.++||.+.....+.-+.+.|.. .++ .+..++|+....++...... ..|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKVI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCEE
Confidence 4788877666654433 4678999999998877756555543 355 89999999988776655443 2366
Q ss_pred EEccccccc-----ccCCCccCeeEe
Q 000096 133 LLSIRAGGV-----GVNLQAADTVII 153 (2260)
Q Consensus 133 LLSTRAGGe-----GLNLQaADhVII 153 (2260)
+.+...... -+.+...++||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 666554432 345666676666
No 82
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=45.12 E-value=63 Score=31.30 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=39.5
Q ss_pred HHHHHhhcCCCeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHh
Q 000096 67 RLLPKLKATDHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122 (2260)
Q Consensus 67 rLLkKLkenGhKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrF 122 (2260)
..+.++. ..++|+||+. +.-.+.....+|...|+.|..++=......|..+.+..
T Consensus 9 ~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~ 69 (109)
T 3ipz_A 9 DTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS 69 (109)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH
Confidence 3444433 3578999998 57889999999999999988887555555555555544
No 83
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=44.73 E-value=34 Score=31.63 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCC--CCCeEEEEEcccccc
Q 000096 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ--DSPFFIFLLSIRAGG 140 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~--DSei~VLLLSTRAGG 140 (2260)
..|..+|.. .|..+..|......++.+ ....+..+.++-.++...-..+++.++.. ...+.|++++.....
T Consensus 17 ~~l~~~L~~---~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 17 ETFKELLEM---LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp HHHHHHHHH---TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred HHHHHHHHH---cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 345555543 355666666555544444 44567788888776655566666666543 455667776654432
Q ss_pred cccCCC--ccCeeEeeCCCCChhhhhhhcccccccCC
Q 000096 141 VGVNLQ--AADTVIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 141 eGLNLQ--aADhVIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
.-.... +++. ++--|+++....+++.+.++-++
T Consensus 90 ~~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 90 DLGKEACELFDF--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp TCCHHHHHHCSE--EEESSCCHHHHHHHHHHHC----
T ss_pred hHHHHHHHhhHH--heeCCCCHHHHHHHHHHhhccCC
Confidence 211111 2333 45568888888888888776544
No 84
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=44.61 E-value=65 Score=29.74 Aligned_cols=96 Identities=17% Similarity=0.040 Sum_probs=54.5
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccc-----c-ccCCCccC
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG-----V-GVNLQAAD 149 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGG-----e-GLNLQaAD 149 (2260)
+..+..+......+ ..+... +..+.++-.++...-..+++.++.......|++++..... . -.....+.
T Consensus 27 ~~~v~~~~~~~~~~----~~~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFL----TLSLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHT----TSCCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHH----HhhccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 44555554443322 233334 7788888777766667777777665566677777654431 1 00111222
Q ss_pred eeEeeCCCCChhhhhhhcccccccCCc
Q 000096 150 TVIIFDTDWNPQVDLQAQARAHRIGQK 176 (2260)
Q Consensus 150 hVIIFDpPWNParDLQAIGRAHRIGQK 176 (2260)
..-++--|+++....+++.|+.+.++.
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 233445678888888888887765543
No 85
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=44.39 E-value=62 Score=30.02 Aligned_cols=95 Identities=13% Similarity=-0.053 Sum_probs=50.1
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCC--CCCeEEEEEcccccccccCCCccCeeE
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ--DSPFFIFLLSIRAGGVGVNLQAADTVI 152 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~--DSei~VLLLSTRAGGeGLNLQaADhVI 152 (2260)
.+..+..+......+..+ ....+..+.++-.++...-..++..++.. ...+.|++++...-..-.....+...-
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 556666666555554443 34567788888766655555666665543 234556666654321111211111112
Q ss_pred eeCCCCChhhhhhhccccccc
Q 000096 153 IFDTDWNPQVDLQAQARAHRI 173 (2260)
Q Consensus 153 IFDpPWNParDLQAIGRAHRI 173 (2260)
++--|+++....+++.++-+.
T Consensus 102 ~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 102 YLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp EEESSCCHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHhh
Confidence 333577777777777666543
No 86
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=43.75 E-value=1e+02 Score=31.88 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=56.0
Q ss_pred ccccHHHHHH-HHHHHhhcC--CCeEEEEEcchhHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 57 RLCGKLEMLD-RLLPKLKAT--DHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 57 RsSGKLELLd-rLLkKLken--GhKVLIFSQfTdtLDILED~Lrkr-----GIkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
.-+||-.... -++..+... +.++||.+.....+.-+.+.++.. ++++..++|+.....+.+.+... .
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~---~-- 134 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN---C-- 134 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS---C--
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcC---C--
Confidence 3478876543 344443332 348999999988777666655433 78999999998876665554432 2
Q ss_pred eEEEEEccccc-----ccccCCCccCeeEe
Q 000096 129 FFIFLLSIRAG-----GVGVNLQAADTVII 153 (2260)
Q Consensus 129 i~VLLLSTRAG-----GeGLNLQaADhVII 153 (2260)
..|++.+.... ...+++...++||+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 34555554432 12345666666665
No 87
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=43.35 E-value=76 Score=30.04 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=40.6
Q ss_pred HHHHHhhcCCCeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhh
Q 000096 67 RLLPKLKATDHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 67 rLLkKLkenGhKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
+.+.++.. .++|+||+. +...+..+..+|...++.|..++=......|..+...+.
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 33444433 457999984 667889999999999999988887766666666666663
No 88
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=41.24 E-value=31 Score=33.16 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCC-CeEEEEEc-chhHHHHHHHHHhhcCceEEEEeCCCCH
Q 000096 63 EMLDRLLPKLKATD-HRVLFFST-MTRLLDVMEDYLTFKQYRYLRLDGHTSG 112 (2260)
Q Consensus 63 ELLdrLLkKLkenG-hKVLIFSQ-fTdtLDILED~LrkrGIkyvRLDGSTSq 112 (2260)
..+...+..+. .+ ++|||||. .-.........|+..|+.+..|+|++..
T Consensus 76 ~~~~~~~~~~~-~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 76 KDIYLQAAELA-LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHH-TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHHhc-cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 44444555443 44 89999994 6566677888889999998999998653
No 89
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=39.87 E-value=1.4e+02 Score=27.86 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=16.9
Q ss_pred cCceEEEEeCCCCHHHHHHHHHHhhC--CCCCeEEEEEcc
Q 000096 99 KQYRYLRLDGHTSGGDRGALIDKFNQ--QDSPFFIFLLSI 136 (2260)
Q Consensus 99 rGIkyvRLDGSTSqEERQeIIDrFNk--~DSei~VLLLST 136 (2260)
..+..+.++-.+....-..+++.++. ....+.|++++.
T Consensus 50 ~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 50 GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 34555555544433333334444433 233455555543
No 90
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=39.73 E-value=86 Score=28.36 Aligned_cols=92 Identities=10% Similarity=-0.026 Sum_probs=40.5
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEee
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 154 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIF 154 (2260)
.+..+..+......+..+ ....+..+.++-.++...-..+++.++.......+++++...... .....+...-++
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l 98 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV 98 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence 355555444444444333 334566777765554333334444443322334455555432211 111111111223
Q ss_pred CCCCChhhhhhhccccc
Q 000096 155 DTDWNPQVDLQAQARAH 171 (2260)
Q Consensus 155 DpPWNParDLQAIGRAH 171 (2260)
--|+++....+++.++.
T Consensus 99 ~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ECCSSTHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHh
Confidence 34666666666655543
No 91
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=39.73 E-value=1.3e+02 Score=30.06 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=36.3
Q ss_pred CCeEEEEEc------chhHHHHHHHHHhhcCce---EEEEeCCCCHHHHHHHHHHh
Q 000096 76 DHRVLFFST------MTRLLDVMEDYLTFKQYR---YLRLDGHTSGGDRGALIDKF 122 (2260)
Q Consensus 76 GhKVLIFSQ------fTdtLDILED~LrkrGIk---yvRLDGSTSqEERQeIIDrF 122 (2260)
.++|+||+. +.-.+....++|...|+. |..++=....+.|..+.+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s 70 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS 70 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh
Confidence 578999998 577899999999999998 87777665656666555544
No 92
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=39.45 E-value=56 Score=28.96 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCC--CCeEEEEEccccccc
Q 000096 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD--SPFFIFLLSIRAGGV 141 (2260)
Q Consensus 64 LLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~D--Sei~VLLLSTRAGGe 141 (2260)
.|..+|. ..|.++..+......+..+. ...+..+.++-.+....-..+++..+... ..+.+++++......
T Consensus 16 ~l~~~l~---~~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~ 88 (119)
T 2j48_A 16 VVCEMLT---AAGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD 88 (119)
T ss_dssp HHHHHHH---HTTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS
T ss_pred HHHHHHH---hCCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch
Confidence 4444444 34667766665555554443 34567777776654434444555554322 344556655443322
Q ss_pred ccCCCccCeeEeeCCCCChhhhhhhcccccc
Q 000096 142 GVNLQAADTVIIFDTDWNPQVDLQAQARAHR 172 (2260)
Q Consensus 142 GLNLQaADhVIIFDpPWNParDLQAIGRAHR 172 (2260)
....+...-++.-|+++....+++.++.+
T Consensus 89 --~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 89 --PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp --HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred --hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 21112122234457777777777766543
No 93
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=38.44 E-value=95 Score=32.63 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=56.4
Q ss_pred ccccHHHH-HHHHHHHhhc--CCCeEEEEEcchhHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 57 RLCGKLEM-LDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLke--nGhKVLIFSQfTdtLDILED~Lrkr-----GIkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
.-+||-.. +.-++..+.. .+.++||.+..+..+.-+.+.++.. ++++..+.|+....++...+ + .
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~ 142 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----K 142 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----S
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----C
Confidence 45889865 5556665543 3578999999988777666666432 78889999998866554433 1 2
Q ss_pred eEEEEEcccccc-----cccCCCccCeeEe
Q 000096 129 FFIFLLSIRAGG-----VGVNLQAADTVII 153 (2260)
Q Consensus 129 i~VLLLSTRAGG-----eGLNLQaADhVII 153 (2260)
+.|++.+....- ..+++...++||+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 446666554331 2345555555554
No 94
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=38.41 E-value=1.3e+02 Score=31.83 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=56.9
Q ss_pred ccccHHHH-HHHHHHHhh-------cCCCeEEEEEcchhHHHHHHH----HHhhcCceEEEEeCCCCHHHHHHHHHHhhC
Q 000096 57 RLCGKLEM-LDRLLPKLK-------ATDHRVLFFSTMTRLLDVMED----YLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLk-------enGhKVLIFSQfTdtLDILED----~LrkrGIkyvRLDGSTSqEERQeIIDrFNk 124 (2260)
.-+||-.. +.-++..+. ..+.++||.+..+..+.-+.+ ++...++.+..+.|+.+...+...+..
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER--- 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---
Confidence 45889755 445555443 246789999998876555444 445568999999999987766555543
Q ss_pred CCCCeEEEEEcccccc-----cccCCCccCeeEe
Q 000096 125 QDSPFFIFLLSIRAGG-----VGVNLQAADTVII 153 (2260)
Q Consensus 125 ~DSei~VLLLSTRAGG-----eGLNLQaADhVII 153 (2260)
.+.|++.+....- ..+++...++||+
T Consensus 152 ---~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp ---CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred ---CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 2345565543321 2345666766665
No 95
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=37.82 E-value=57 Score=42.94 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=64.7
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH----hhcCc----eEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL----TFKQY----RYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L----rkrGI----kyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
.-|||-.++.-++..+...+.++||.+..+..+.-+.+.| ...++ .+..++|+++..+|.+.++.+..
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----
Confidence 4589987777777777777889999999988765555554 44467 88999999998888888887744
Q ss_pred eEEEEEcccccccccC-CCccCeeEe
Q 000096 129 FFIFLLSIRAGGVGVN-LQAADTVII 153 (2260)
Q Consensus 129 i~VLLLSTRAGGeGLN-LQaADhVII 153 (2260)
+.|++.+....-.-+. |...++||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 4566666544332222 445555554
No 96
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=36.77 E-value=36 Score=32.65 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCC
Q 000096 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 111 (2260)
Q Consensus 64 LLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTS 111 (2260)
.|...+..+ ..++++||||..-........+|+..|+++..|+|++.
T Consensus 44 ~l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 344455544 45688999999888888888999999999999999854
No 97
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=35.59 E-value=1.1e+02 Score=30.01 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=36.5
Q ss_pred CCCeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHh
Q 000096 75 TDHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122 (2260)
Q Consensus 75 nGhKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrF 122 (2260)
..++|+||+. +.-.+.....+|...|+.|..++=......|..+.+..
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~ 67 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYS 67 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHH
Confidence 4679999994 66788999999999999998887655555555554443
No 98
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=34.12 E-value=1.5e+02 Score=32.67 Aligned_cols=92 Identities=15% Similarity=0.028 Sum_probs=58.2
Q ss_pred ccccHHHHH-HHHHHHhhc--CCCeEEEEEcchhHHHHHHHHHhhc-----CceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 57 RLCGKLEML-DRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 57 RsSGKLELL-drLLkKLke--nGhKVLIFSQfTdtLDILED~Lrkr-----GIkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
.-+||-... .-++..+.. .+.++||.+.....+.-+.+.++.. ++++..++|+.....+...+..- .
T Consensus 54 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~-- 128 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN---C-- 128 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS---C--
T ss_pred CCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC---C--
Confidence 357888654 344444332 2468999999988777666655433 78999999998876666555432 2
Q ss_pred eEEEEEcccccc-----cccCCCccCeeEe
Q 000096 129 FFIFLLSIRAGG-----VGVNLQAADTVII 153 (2260)
Q Consensus 129 i~VLLLSTRAGG-----eGLNLQaADhVII 153 (2260)
..|++.+....- ..+++...++||+
T Consensus 129 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 129 PHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 345666554432 2355667777766
No 99
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=33.74 E-value=1.5e+02 Score=32.00 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=55.5
Q ss_pred ccccHHHH-HHHHHHHhhcC--CCeEEEEEcchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCe
Q 000096 57 RLCGKLEM-LDRLLPKLKAT--DHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 129 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLken--GhKVLIFSQfTdtLDILED~L----rkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei 129 (2260)
.-+||-.. +.-++..+... +.++||.+..+..+.-+.+.| ...++.+..+.|+.....+...+. . .+
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~ 162 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---K---KP 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---T---CC
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---C---CC
Confidence 45788765 44444444433 457999999887666555444 444889999999987655443332 1 23
Q ss_pred EEEEEccccc------ccccCCCccCeeEe
Q 000096 130 FIFLLSIRAG------GVGVNLQAADTVII 153 (2260)
Q Consensus 130 ~VLLLSTRAG------GeGLNLQaADhVII 153 (2260)
.|++.+.... ..++++...++||+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 4555554432 13456777777766
No 100
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.50 E-value=1.3e+02 Score=28.26 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhC--CCCCeEEEEEccccccc
Q 000096 64 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ--QDSPFFIFLLSIRAGGV 141 (2260)
Q Consensus 64 LLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk--~DSei~VLLLSTRAGGe 141 (2260)
.|..+|.. .|..+..+......++.+ ....+..+.++-.++...-..++..++. ....+.|++++...-..
T Consensus 21 ~l~~~l~~---~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 93 (140)
T 3grc_A 21 LLNLMLEK---GGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREG 93 (140)
T ss_dssp HHHHHHHH---TTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHH
T ss_pred HHHHHHHH---CCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChH
Confidence 34444443 355665555544444433 3455677777766655555566666654 33455666666443211
Q ss_pred c-c-CCCccCeeEeeCCCCChhhhhhhcccccc
Q 000096 142 G-V-NLQAADTVIIFDTDWNPQVDLQAQARAHR 172 (2260)
Q Consensus 142 G-L-NLQaADhVIIFDpPWNParDLQAIGRAHR 172 (2260)
- . ....+...-++--|+++....+++.|+.+
T Consensus 94 ~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 94 ELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp HHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1 0 11222222233456666666666666554
No 101
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=32.27 E-value=93 Score=32.40 Aligned_cols=91 Identities=16% Similarity=0.083 Sum_probs=51.7
Q ss_pred ccccHHHH-HHHHHHHhh--------cCCCeEEEEEcchhHHHHHHHHHhh---cCceEEEEeCCCCHHHHHHHHHHhhC
Q 000096 57 RLCGKLEM-LDRLLPKLK--------ATDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQ 124 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLk--------enGhKVLIFSQfTdtLDILED~Lrk---rGIkyvRLDGSTSqEERQeIIDrFNk 124 (2260)
.-+||-.. +.-++..+. ..+.++||.+..+..+.-+.+.++. .++.+..+.|+.....+...+. .
T Consensus 66 TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 142 (228)
T 3iuy_A 66 TGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS---K 142 (228)
T ss_dssp TTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH---S
T ss_pred CCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc---C
Confidence 45889754 444444433 2567899999999887777777755 4788888988876544433332 2
Q ss_pred CCCCeEEEEEcccccc-----cccCCCccCeeEe
Q 000096 125 QDSPFFIFLLSIRAGG-----VGVNLQAADTVII 153 (2260)
Q Consensus 125 ~DSei~VLLLSTRAGG-----eGLNLQaADhVII 153 (2260)
.+.|++.+....- ..+++...++||+
T Consensus 143 ---~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 143 ---GVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp ---CCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred ---CCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 2345555543322 2445666666655
No 102
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=31.97 E-value=2e+02 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=14.4
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhhCCC--CCeEEEEEc
Q 000096 100 QYRYLRLDGHTSGGDRGALIDKFNQQD--SPFFIFLLS 135 (2260)
Q Consensus 100 GIkyvRLDGSTSqEERQeIIDrFNk~D--Sei~VLLLS 135 (2260)
.+..+.++-.++...-..++..++... ..+.|++++
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 83 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
T ss_dssp CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEE
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEe
Confidence 455566665554444444455444332 334444444
No 103
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=31.94 E-value=1.2e+02 Score=29.12 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=37.6
Q ss_pred CCeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHh
Q 000096 76 DHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122 (2260)
Q Consensus 76 GhKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrF 122 (2260)
.++|+||+. +.-.+..+..+|...++.|..++=......|..+...+
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 457999987 44578889999999999999998877766677766665
No 104
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.62 E-value=80 Score=29.12 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=42.0
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhc-CceEEEEeCCCCH-HHHHHHHHHhhCCCCCeEEEEEcccccc----cccCCCcc
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSG-GDRGALIDKFNQQDSPFFIFLLSIRAGG----VGVNLQAA 148 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~Lrkr-GIkyvRLDGSTSq-EERQeIIDrFNk~DSei~VLLLSTRAGG----eGLNLQaA 148 (2260)
.+..+..+......+..+ ... .+..+.++-.++. ..-..++..++.....+.|++++..... .++..
T Consensus 28 ~g~~v~~~~~~~~a~~~l----~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--- 100 (132)
T 2rdm_A 28 AGFLVTAVSSGAKAIEML----KSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD--- 100 (132)
T ss_dssp TTCEEEEESSHHHHHHHH----HTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT---
T ss_pred cCCEEEEECCHHHHHHHH----HcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC---
Confidence 355555544433333333 333 4566666655442 2333344444322234455555543321 12211
Q ss_pred CeeEeeCCCCChhhhhhhcccccccCC
Q 000096 149 DTVIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 149 DhVIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
. -++--|+++....+++.|+.+.++
T Consensus 101 ~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 101 S--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp C--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred c--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 1 133446666666677666666543
No 105
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=31.32 E-value=70 Score=36.95 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=53.8
Q ss_pred ccccHHHHHHHHH-HHhhcC----CCeEEEEEcchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHhhCCCC
Q 000096 57 RLCGKLEMLDRLL-PKLKAT----DHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127 (2260)
Q Consensus 57 RsSGKLELLdrLL-kKLken----GhKVLIFSQfTdtLDILED~L----rkrGIkyvRLDGSTSqEERQeIIDrFNk~DS 127 (2260)
.-+||-....-.+ ..+... +.++||.+.....+.-+.+.| ...++.+..++|+.....+...+..
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------ 101 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE------ 101 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH------
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc------
Confidence 3478876544433 333322 778999999877655444444 4459999999999876554333322
Q ss_pred CeEEEEEcccccccc-----c-CCCccCeeEe
Q 000096 128 PFFIFLLSIRAGGVG-----V-NLQAADTVII 153 (2260)
Q Consensus 128 ei~VLLLSTRAGGeG-----L-NLQaADhVII 153 (2260)
.+.|++.+....-.- + .+...++||+
T Consensus 102 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 102 DNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 134666665543321 2 4555666665
No 106
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=30.74 E-value=1.7e+02 Score=29.18 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=36.1
Q ss_pred CCeEEEEEc------chhHHHHHHHHHhhcCce-EEEEeCCCCHHHHHHHHHHh
Q 000096 76 DHRVLFFST------MTRLLDVMEDYLTFKQYR-YLRLDGHTSGGDRGALIDKF 122 (2260)
Q Consensus 76 GhKVLIFSQ------fTdtLDILED~LrkrGIk-yvRLDGSTSqEERQeIIDrF 122 (2260)
.++|+||+. +.-.+....++|...++. |..++=....+.|..+.+..
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~t 72 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYS 72 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHh
Confidence 368999998 677899999999999995 88887665666666554443
No 107
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=30.67 E-value=1.3e+02 Score=27.96 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCCCe-EEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhC--CCCCeEEEEEcccccc
Q 000096 64 MLDRLLPKLKATDHR-VLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ--QDSPFFIFLLSIRAGG 140 (2260)
Q Consensus 64 LLdrLLkKLkenGhK-VLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk--~DSei~VLLLSTRAGG 140 (2260)
.|..+|... .+.. +..+....+.+..+ ....+..+.++-.+....-..+++.++. ....+.|++++.....
T Consensus 23 ~l~~~L~~~--~~~~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 96 (143)
T 3cnb_A 23 MLTQFLENL--FPYAKIKIAYNPFDAGDLL----HTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTD 96 (143)
T ss_dssp HHHHHHHHH--CTTCEEEEECSHHHHHHHH----HHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCH
T ss_pred HHHHHHHhc--cCccEEEEECCHHHHHHHH----HhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCH
Confidence 344444432 4555 55555544444443 3345677777766654444556666654 3445666666544321
Q ss_pred c----ccCCCccCeeEeeCCCCChhhhhhhcccccccCC
Q 000096 141 V----GVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 141 e----GLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
. .+.+ +++.+ +--++++....+++.++.|..+
T Consensus 97 ~~~~~~~~~-g~~~~--l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 97 DNVSRIVAL-GAETC--FGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp HHHHHHHHT-TCSEE--EESSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-CCcEE--EeCCCCHHHHHHHHHHHHHhhc
Confidence 1 1111 22222 3346777777777777665443
No 108
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=30.17 E-value=1.8e+02 Score=27.31 Aligned_cols=100 Identities=9% Similarity=0.013 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEc-ccccc
Q 000096 63 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS-IRAGG 140 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQfTdtLDILED~Lrk-rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLS-TRAGG 140 (2260)
..|..+|.. .|..+..+....+.+. .|.. ..+..+.++-.++...-..++..++.....+.+++++ .....
T Consensus 29 ~~l~~~L~~---~g~~v~~~~~~~~al~----~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~ 101 (138)
T 2b4a_A 29 TLIQYHLNQ---LGAEVTVHPSGSAFFQ----HRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHEL 101 (138)
T ss_dssp HHHHHHHHH---TTCEEEEESSHHHHHH----TGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--C
T ss_pred HHHHHHHHH---cCCEEEEeCCHHHHHH----HHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCH
Confidence 345555543 3566655554444333 3444 5678888887776555566777776655567777776 33221
Q ss_pred cccCCCccCeeEeeCCCCChhhhhhhcccccc
Q 000096 141 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHR 172 (2260)
Q Consensus 141 eGLNLQaADhVIIFDpPWNParDLQAIGRAHR 172 (2260)
.-.... ++. ++--++++....+++.++.+
T Consensus 102 ~~~~~~-~~~--~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 102 IESSEH-NLS--YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CCCSSS-CEE--EEESSCCHHHHHHHHHHTCC
T ss_pred HHHHHH-HHh--eeeCCCCHHHHHHHHHHHHH
Confidence 112222 333 34457888888888877755
No 109
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=30.11 E-value=1.1e+02 Score=31.45 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=36.8
Q ss_pred CeEEEEEc------chhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHh
Q 000096 77 HRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122 (2260)
Q Consensus 77 hKVLIFSQ------fTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrF 122 (2260)
.+|+||+. +.-.+..+..+|...++.|..++=......|..+....
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~ 86 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH
Confidence 48999987 66789999999999999998888766666666666555
No 110
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.95 E-value=1.1e+02 Score=28.23 Aligned_cols=45 Identities=13% Similarity=-0.069 Sum_probs=20.8
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhC
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 124 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk 124 (2260)
+..+..+......+..+ ....+..+.++-.++...-..+++.++.
T Consensus 30 g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~ 74 (132)
T 3lte_A 30 HWQVEIAHNGFDAGIKL----STFEPAIMTLDLSMPKLDGLDVIRSLRQ 74 (132)
T ss_dssp TCEEEEESSHHHHHHHH----HHTCCSEEEEESCBTTBCHHHHHHHHHT
T ss_pred CcEEEEeCCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 44554444433333322 3344555556655544444445555543
No 111
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=29.21 E-value=1.9e+02 Score=29.28 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=56.4
Q ss_pred ccccHHHH-HHHHHHHhh-----cCCCeEEEEEcchhHHHHHHHHHhhc--CceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 57 RLCGKLEM-LDRLLPKLK-----ATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLk-----enGhKVLIFSQfTdtLDILED~Lrkr--GIkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
.-+||-.. +.-++..+. ..+.++||.+..+..+.-+.+.|+.. .+++..++|+.....+...+.. .
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 120 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR------G 120 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH------C
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC------C
Confidence 35789866 555555553 24678999999988877777777544 4778889998875544444322 1
Q ss_pred eEEEEEcccccc-----cccCCCccCeeEe
Q 000096 129 FFIFLLSIRAGG-----VGVNLQAADTVII 153 (2260)
Q Consensus 129 i~VLLLSTRAGG-----eGLNLQaADhVII 153 (2260)
+.|++.+....- ..+++...++||+
T Consensus 121 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp CSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 345555543321 2345666666665
No 112
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=29.00 E-value=80 Score=36.66 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=50.9
Q ss_pred ccccHHHHHHHHH-HHhhcC----CCeEEEEEcchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHhhCCCC
Q 000096 57 RLCGKLEMLDRLL-PKLKAT----DHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 127 (2260)
Q Consensus 57 RsSGKLELLdrLL-kKLken----GhKVLIFSQfTdtLDILED~L----rkrGIkyvRLDGSTSqEERQeIIDrFNk~DS 127 (2260)
.-+||-....-.+ ..+... +.++||.+.....+.-+.+.| ...++.+..++|+.+...+...+..
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------ 104 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE------ 104 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH------
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC------
Confidence 3478876544433 333322 678999998877655544444 4448999999999875544333322
Q ss_pred CeEEEEEccccccc----c-c-CCCccCeeEe
Q 000096 128 PFFIFLLSIRAGGV----G-V-NLQAADTVII 153 (2260)
Q Consensus 128 ei~VLLLSTRAGGe----G-L-NLQaADhVII 153 (2260)
.+.|++.+....-. + + .+...++||+
T Consensus 105 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 105 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 13366666555431 1 3 5666677766
No 113
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=27.85 E-value=1.9e+02 Score=30.22 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=51.2
Q ss_pred ccccHHHH-HHHHHHHhh------cCCCeEEEEEcchhHHHHHHHHHhh----cCceEEEEeCCCCHHHHHHHHHHhhCC
Q 000096 57 RLCGKLEM-LDRLLPKLK------ATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQ 125 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLk------enGhKVLIFSQfTdtLDILED~Lrk----rGIkyvRLDGSTSqEERQeIIDrFNk~ 125 (2260)
.-+||-.. +.-++..+. ..+.++||.+..+..+.-+.+.++. .++.+..++|+.....+...+ +
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-- 145 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N-- 145 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T--
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C--
Confidence 45788765 333333332 3467899999988876666655543 458888999987654443333 1
Q ss_pred CCCeEEEEEcccccc------cccCCCccCeeEe
Q 000096 126 DSPFFIFLLSIRAGG------VGVNLQAADTVII 153 (2260)
Q Consensus 126 DSei~VLLLSTRAGG------eGLNLQaADhVII 153 (2260)
.+.|++.+....- ..+++...++||+
T Consensus 146 --~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 --NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp --TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2346666654331 1245555555555
No 114
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.72 E-value=1e+02 Score=32.89 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=39.6
Q ss_pred CCCeEEEEEcch----hHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHh
Q 000096 75 TDHRVLFFSTMT----RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 122 (2260)
Q Consensus 75 nGhKVLIFSQfT----dtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrF 122 (2260)
.+.|+|+++--- --+.++..+|+.+||.+..+.-.++.++-...+.++
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~ 138 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY 138 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 346899998543 357899999999999999998889988888888887
No 115
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=26.40 E-value=1.1e+02 Score=31.73 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=49.2
Q ss_pred ccccHHHH-HHHHHHHhhc--CCCeEEEEEcchhHHHHHHHHHh----hcCceEEEEeCCCCHHHHHHHHHHhhCCCCCe
Q 000096 57 RLCGKLEM-LDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 129 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLke--nGhKVLIFSQfTdtLDILED~Lr----krGIkyvRLDGSTSqEERQeIIDrFNk~DSei 129 (2260)
.-+||-.. +.-++..+.. .+.++||.+..+..+.-+.+.++ ..++.+..++|+....++.. .++ .+
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~----~~ 132 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR----DA 132 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT----TC
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC----CC
Confidence 45889866 5666665543 35689999998887665555553 44788899999876443332 221 14
Q ss_pred EEEEEccccc-----ccccCCCccCeeEe
Q 000096 130 FIFLLSIRAG-----GVGVNLQAADTVII 153 (2260)
Q Consensus 130 ~VLLLSTRAG-----GeGLNLQaADhVII 153 (2260)
.|++.+.... ...+++...++||+
T Consensus 133 ~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 133 QIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 4666554432 12344555555554
No 116
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=25.78 E-value=99 Score=31.85 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=37.0
Q ss_pred EEEEEcchhH-------HHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhh
Q 000096 79 VLFFSTMTRL-------LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 79 VLIFSQfTdt-------LDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
|.||+....- +..+..+|..+|+.|..++=....+.|..++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 5677654432 37899999999999999999999999999999983
No 117
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=25.04 E-value=1e+02 Score=28.00 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=32.3
Q ss_pred HHHHHHHh-hcCCCeEEEEEcchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 000096 65 LDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTS 111 (2260)
Q Consensus 65 LdrLLkKL-kenGhKVLIFSQfTdtLDILED~LrkrGIk-yvRLDGSTS 111 (2260)
|...+.++ ...+.++||||..-.........|+..|+. +..+ |+..
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 33444444 245688999999877778888899888986 4445 6643
No 118
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=24.75 E-value=1.7e+02 Score=30.38 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=42.2
Q ss_pred eEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCC
Q 000096 78 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 125 (2260)
Q Consensus 78 KVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~ 125 (2260)
-++||+.-...+..|.+.++..|++++.+........|...++.|.+.
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 368899999999999999999999999999999999999999999653
No 119
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.73 E-value=77 Score=29.84 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=45.4
Q ss_pred CCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccc----cccCCCccCe
Q 000096 75 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG----VGVNLQAADT 150 (2260)
Q Consensus 75 nGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGG----eGLNLQaADh 150 (2260)
.|..++.+......+. .|....+..+.++- +....-..++..++.....+.|++++..... ..+.. +++.
T Consensus 27 ~g~~v~~~~~~~~a~~----~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~-g~~~ 100 (142)
T 2qxy_A 27 DGFNVIWAKNEQEAFT----FLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKA-GAVD 100 (142)
T ss_dssp GTCEEEEESSHHHHHH----HHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHH-TCSC
T ss_pred CCCEEEEECCHHHHHH----HHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC-Ccce
Confidence 3556665444433333 33345667777776 6554445555555443344566666543221 11111 1222
Q ss_pred eEeeCCCCChhhhhhhcccccccCC
Q 000096 151 VIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 151 VIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
+ +--++++....+++.|+.+..+
T Consensus 101 ~--l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 101 Y--ILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp E--EESSCCHHHHHHHHHHHHHC--
T ss_pred e--EeCCCCHHHHHHHHHHHHhhcc
Confidence 2 2336667767777766665443
No 120
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.24 E-value=1.1e+02 Score=28.50 Aligned_cols=57 Identities=7% Similarity=-0.014 Sum_probs=28.5
Q ss_pred CCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 76 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 76 GhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
+..+..+......+..+. ...+..+.++-.++...-..++..++.....+.|++++.
T Consensus 31 ~~~v~~~~~~~~a~~~l~----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 31 FPEVWSAGDGEEGERLFG----LHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp CSCEEEESSHHHHHHHHH----HHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred CcEEEEECCHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEec
Confidence 445555555444444443 234566666655554444455555544344455555543
No 121
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=22.79 E-value=1.7e+02 Score=36.19 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=60.1
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcc
Q 000096 57 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 136 (2260)
Q Consensus 57 RsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLST 136 (2260)
.-+||-... +|..+. .+.++||.+.....+.-..+.|...|+.+..++|+.+..++..++..+......+.|++++.
T Consensus 68 TGsGKTl~~--~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 68 TGGGKSLCY--QLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp TTSCTTHHH--HHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCChHHHHH--HHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 447786432 222222 35689999999999888888888889999999999999999888888855455667777777
Q ss_pred ccc
Q 000096 137 RAG 139 (2260)
Q Consensus 137 RAG 139 (2260)
...
T Consensus 145 e~L 147 (591)
T 2v1x_A 145 EKI 147 (591)
T ss_dssp HHH
T ss_pred hHh
Confidence 543
No 122
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=22.33 E-value=3.2e+02 Score=29.63 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=54.7
Q ss_pred ccccHHHH-HHHHHHHhhc------CCCeEEEEEcchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHhhCC
Q 000096 57 RLCGKLEM-LDRLLPKLKA------TDHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQ 125 (2260)
Q Consensus 57 RsSGKLEL-LdrLLkKLke------nGhKVLIFSQfTdtLDILED~L----rkrGIkyvRLDGSTSqEERQeIIDrFNk~ 125 (2260)
.-+||-.. +.-+|..+.. .+.++||.+..+..+.-+.+.| ...++.+..+.|+.....+...+.. +
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~ 176 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN---G 176 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH---C
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC---C
Confidence 34788754 4445544432 5678999999887665555444 4557888899998876555444332 1
Q ss_pred CCCeEEEEEccccc------ccccCCCccCeeEe
Q 000096 126 DSPFFIFLLSIRAG------GVGVNLQAADTVII 153 (2260)
Q Consensus 126 DSei~VLLLSTRAG------GeGLNLQaADhVII 153 (2260)
+.|++.+.... ..++++....+||+
T Consensus 177 ---~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 177 ---INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp ---CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred ---CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 34555553221 22456666766665
No 123
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.94 E-value=1.4e+02 Score=27.07 Aligned_cols=15 Identities=0% Similarity=-0.135 Sum_probs=7.1
Q ss_pred CCChhhhhhhccccc
Q 000096 157 DWNPQVDLQAQARAH 171 (2260)
Q Consensus 157 PWNParDLQAIGRAH 171 (2260)
|+++....+++.++.
T Consensus 109 p~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 109 PVDADQLVERAGALI 123 (127)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444444443
No 124
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=21.72 E-value=1.2e+02 Score=38.18 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=50.1
Q ss_pred cccHHHHHHHHHHHhhcC-----CCeEEEEEcchhHHHHHHHHH----hhcCceEEEEeCCCCHHHHHHHHHHhhCCCCC
Q 000096 58 LCGKLEMLDRLLPKLKAT-----DHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 128 (2260)
Q Consensus 58 sSGKLELLdrLLkKLken-----GhKVLIFSQfTdtLDILED~L----rkrGIkyvRLDGSTSqEERQeIIDrFNk~DSe 128 (2260)
-+||-....-.+...... +.++||.+.....+.-+.+.| ...++++..++|+.+...+...+.. .
T Consensus 273 GsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~ 346 (797)
T 4a2q_A 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE------D 346 (797)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH------T
T ss_pred CChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC------C
Confidence 478886654444333222 789999999887665544444 4449999999999875554333321 1
Q ss_pred eEEEEEcccccccc-----c-CCCccCeeEe
Q 000096 129 FFIFLLSIRAGGVG-----V-NLQAADTVII 153 (2260)
Q Consensus 129 i~VLLLSTRAGGeG-----L-NLQaADhVII 153 (2260)
+.|++.+....-.- + .+...++||+
T Consensus 347 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 347 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 34666665443221 2 4455566665
No 125
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=21.68 E-value=93 Score=29.52 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCeEEEEEcchhHHHHHHHHHhhcCce-EEEEeCCCC
Q 000096 65 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTS 111 (2260)
Q Consensus 65 LdrLLkKLkenGhKVLIFSQfTdtLDILED~LrkrGIk-yvRLDGSTS 111 (2260)
|...+.++ ..++++||||..-.........|+..|+. +..|.|++.
T Consensus 48 l~~~~~~l-~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRDN-DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHS-CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhc-CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 34444443 46788999999887888888899999995 778999864
No 126
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.48 E-value=1.4e+02 Score=28.28 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=52.5
Q ss_pred HHHHHHHHhhcCC-CeEEEEEcchhHHHHHHHHHhh-cCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEccccccc
Q 000096 64 MLDRLLPKLKATD-HRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 141 (2260)
Q Consensus 64 LLdrLLkKLkenG-hKVLIFSQfTdtLDILED~Lrk-rGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGe 141 (2260)
.|..+|... + ..++.|......+..+. .. ..+..+.++-.++...-..++..++.....+.|++++...-..
T Consensus 35 ~l~~~L~~~---g~~~v~~~~~~~~~~~~~~---~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~ 108 (146)
T 4dad_A 35 HLARLVGDA---GRYRVTRTVGRAAQIVQRT---DGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQ 108 (146)
T ss_dssp HHHHHHHHH---CSCEEEEECCCHHHHTTCH---HHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHH
T ss_pred HHHHHHhhC---CCeEEEEeCCHHHHHHHHH---hcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHH
Confidence 444455432 3 56666665544443332 22 4566777777766655556666655444455666665433211
Q ss_pred c-cCCCccCeeEeeCCCCChhhhhhhcccccccC
Q 000096 142 G-VNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 174 (2260)
Q Consensus 142 G-LNLQaADhVIIFDpPWNParDLQAIGRAHRIG 174 (2260)
. .....+...-++--++++....+++.|+.+..
T Consensus 109 ~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 109 TLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp HHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 0 11111112222334666666666666665543
No 127
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=21.31 E-value=95 Score=31.43 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHHHhh------cCCCeEEEEEcchhHHHH-HHHHHhh---cCceEEEEeCCCCHHH
Q 000096 58 LCGKLEMLDRLLPKLK------ATDHRVLFFSTMTRLLDV-MEDYLTF---KQYRYLRLDGHTSGGD 114 (2260)
Q Consensus 58 sSGKLELLdrLLkKLk------enGhKVLIFSQfTdtLDI-LED~Lrk---rGIkyvRLDGSTSqEE 114 (2260)
-+||-.....++..+. ..+.++||++.....++- +.+.+.. .++.+..++|+.....
T Consensus 58 GsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 124 (216)
T 3b6e_A 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKI 124 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCC
T ss_pred CCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccch
Confidence 4678766555544332 226799999998777554 4444432 3678888888765443
No 128
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=20.77 E-value=2.2e+02 Score=26.42 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=35.8
Q ss_pred eEEEEEcc-hhHH------HHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhh
Q 000096 78 RVLFFSTM-TRLL------DVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 123 (2260)
Q Consensus 78 KVLIFSQf-TdtL------DILED~LrkrGIkyvRLDGSTSqEERQeIIDrFN 123 (2260)
+|+||+.. .... .....+|...|+.|..++=......|..+.+.+.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 68888754 3345 7888899999999999988877777887777763
No 129
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=20.61 E-value=39 Score=27.39 Aligned_cols=14 Identities=50% Similarity=0.983 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCC
Q 000096 427 PPSKRGRGRPRRAD 440 (2260)
Q Consensus 427 ~p~kRgRGRprr~d 440 (2260)
|+.||.||||+-+.
T Consensus 2 ptpKrpRgRpkGSK 15 (26)
T 2ezd_A 2 PTPKRPRGRPKGSK 15 (26)
T ss_dssp CSCCCCSSCCTTCC
T ss_pred CCCcCCCCCcCccc
Confidence 56699999999863
No 130
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=20.05 E-value=3.4e+02 Score=27.69 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCCCeEEEEEc------chhHHHHHHHHHhhcCc-eEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEE
Q 000096 63 EMLDRLLPKLKATDHRVLFFST------MTRLLDVMEDYLTFKQY-RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 133 (2260)
Q Consensus 63 ELLdrLLkKLkenGhKVLIFSQ------fTdtLDILED~LrkrGI-kyvRLDGSTSqEERQeIIDrFNk~DSei~VLL 133 (2260)
+.+.+++. .++|+||+. +.-+.....+.|...++ .|..++=....+.|+.+.+.- ....-.+||+
T Consensus 11 e~i~~~i~-----~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~s-g~~TvPqIFI 82 (118)
T 2wul_A 11 EQLDALVK-----KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYS-NWPTIPQVYL 82 (118)
T ss_dssp HHHHHHHH-----HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHH-TCCSSCEEEE
T ss_pred HHHHHHHh-----cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhc-cCCCCCeEeE
Confidence 34555554 369999976 35678888888888887 477776666666666555544 3333345555
Done!