Query 000098
Match_columns 2256
No_of_seqs 656 out of 3468
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1242 Protein containing ada 100.0 5.4E-54 1.2E-58 521.1 41.6 562 1201-1768 3-566 (569)
2 KOG2171 Karyopherin (importin) 100.0 7.8E-47 1.7E-51 482.7 81.8 956 1057-2248 4-1036(1075)
3 KOG1241 Karyopherin (importin) 100.0 6.6E-36 1.4E-40 363.2 51.1 645 1057-1770 1-767 (859)
4 PF12074 DUF3554: Domain of un 100.0 1.3E-38 2.7E-43 396.3 28.1 318 346-692 1-339 (339)
5 KOG1824 TATA-binding protein-i 100.0 1.6E-32 3.5E-37 337.6 73.8 890 1209-2199 41-1056(1233)
6 KOG2171 Karyopherin (importin) 100.0 1.1E-30 2.3E-35 335.4 80.8 796 1275-2187 19-919 (1075)
7 KOG2023 Nuclear transport rece 100.0 1.4E-34 3E-39 344.6 40.6 705 1508-2256 22-815 (885)
8 KOG2023 Nuclear transport rece 100.0 1.8E-31 4E-36 318.1 49.6 745 1133-1966 16-871 (885)
9 COG5215 KAP95 Karyopherin (imp 100.0 3.4E-28 7.3E-33 285.0 48.9 631 1056-1746 3-732 (858)
10 KOG1824 TATA-binding protein-i 100.0 6.6E-23 1.4E-27 253.6 85.1 1014 1134-2181 9-1185(1233)
11 KOG1241 Karyopherin (importin) 100.0 1.1E-22 2.3E-27 248.8 65.1 750 1311-2182 12-855 (859)
12 KOG0213 Splicing factor 3b, su 99.9 1.5E-20 3.3E-25 226.4 62.1 678 1216-1993 365-1064(1172)
13 KOG0213 Splicing factor 3b, su 99.9 1.9E-21 4E-26 234.2 48.8 717 1428-2246 371-1130(1172)
14 KOG0915 Uncharacterized conser 99.9 1.2E-17 2.5E-22 217.8 67.8 602 1275-1955 833-1472(1702)
15 KOG1242 Protein containing ada 99.9 1.3E-20 2.8E-25 231.0 37.6 513 1509-2096 27-557 (569)
16 KOG0915 Uncharacterized conser 99.9 1.8E-17 3.9E-22 216.1 66.1 530 1574-2180 816-1386(1702)
17 COG5181 HSH155 U2 snRNP splice 99.9 9.2E-19 2E-23 207.6 47.2 667 1225-1992 177-868 (975)
18 PLN03200 cellulose synthase-in 99.9 1.1E-15 2.3E-20 213.6 84.4 644 1133-1804 102-811 (2102)
19 PLN03200 cellulose synthase-in 99.9 1.7E-17 3.7E-22 231.3 66.5 793 1301-2163 59-933 (2102)
20 COG5181 HSH155 U2 snRNP splice 99.9 6.5E-18 1.4E-22 200.6 48.5 714 1428-2181 176-946 (975)
21 COG5215 KAP95 Karyopherin (imp 99.9 5E-16 1.1E-20 183.7 59.9 704 1332-2188 34-815 (858)
22 KOG0211 Protein phosphatase 2A 99.8 4.6E-18 9.9E-23 220.5 42.9 556 1350-1995 94-665 (759)
23 KOG0211 Protein phosphatase 2A 99.8 5.8E-17 1.3E-21 210.3 40.1 552 1192-1802 97-662 (759)
24 KOG0392 SNF2 family DNA-depend 99.7 1.6E-13 3.4E-18 176.3 50.0 814 1335-2236 75-981 (1549)
25 KOG0212 Uncharacterized conser 99.6 3.2E-12 7E-17 153.1 44.1 425 1426-1919 6-449 (675)
26 KOG1943 Beta-tubulin folding c 99.6 1.2E-09 2.6E-14 141.1 65.4 804 1295-2208 67-987 (1133)
27 KOG0212 Uncharacterized conser 99.5 2.5E-11 5.3E-16 145.7 38.1 423 1623-2141 4-444 (675)
28 KOG1248 Uncharacterized conser 99.5 2E-07 4.3E-12 122.7 73.8 759 1299-2204 92-921 (1176)
29 PF01602 Adaptin_N: Adaptin N 99.4 2.8E-10 6.1E-15 153.1 42.8 478 1451-1992 35-522 (526)
30 PF01602 Adaptin_N: Adaptin N 99.4 7E-10 1.5E-14 149.3 44.8 496 1229-1764 19-522 (526)
31 KOG1248 Uncharacterized conser 99.4 1.3E-06 2.8E-11 115.3 69.8 769 1027-1926 73-910 (1176)
32 KOG1943 Beta-tubulin folding c 99.4 3E-07 6.4E-12 119.6 61.0 494 1298-1805 339-882 (1133)
33 KOG1991 Nuclear transport rece 99.4 4.5E-07 9.8E-12 117.2 58.9 636 1056-1748 3-780 (1010)
34 PTZ00429 beta-adaptin; Provisi 99.3 1.7E-07 3.8E-12 125.0 56.9 468 1378-1909 68-541 (746)
35 PTZ00429 beta-adaptin; Provisi 99.3 1.3E-07 2.7E-12 126.3 54.8 496 1223-1763 39-543 (746)
36 KOG0392 SNF2 family DNA-depend 99.3 5.7E-09 1.2E-13 135.5 39.7 235 1057-1330 77-326 (1549)
37 KOG0166 Karyopherin (importin) 99.3 8.1E-10 1.8E-14 136.6 28.2 378 1424-1803 70-485 (514)
38 PRK13800 putative oxidoreducta 99.3 4.1E-10 8.8E-15 157.6 28.2 273 1421-1762 622-895 (897)
39 KOG0166 Karyopherin (importin) 99.2 4.1E-09 8.9E-14 130.5 28.0 349 1339-1726 68-437 (514)
40 PRK09687 putative lyase; Provi 99.2 1.6E-09 3.6E-14 129.8 24.2 149 1382-1554 27-176 (280)
41 PRK13800 putative oxidoreducta 99.2 1.7E-09 3.6E-14 151.6 27.9 275 1620-1991 622-896 (897)
42 PRK09687 putative lyase; Provi 99.2 1.5E-09 3.3E-14 130.2 23.4 251 1422-1721 25-278 (280)
43 KOG1991 Nuclear transport rece 99.1 0.00011 2.5E-09 95.8 63.8 683 1300-2179 5-797 (1010)
44 KOG2274 Predicted importin 9 [ 99.1 2.4E-06 5.2E-11 109.2 47.5 640 1056-1724 3-779 (1005)
45 KOG1967 DNA repair/transcripti 99.0 0.00065 1.4E-08 88.0 62.9 116 2066-2181 901-1023(1030)
46 KOG1992 Nuclear export recepto 99.0 0.00069 1.5E-08 86.6 62.2 300 1410-1749 224-560 (960)
47 KOG2274 Predicted importin 9 [ 99.0 0.0002 4.4E-09 92.3 54.9 695 1133-1993 7-779 (1005)
48 PF10508 Proteasom_PSMB: Prote 98.9 4.2E-06 9.1E-11 109.8 40.1 394 1425-1913 43-461 (503)
49 KOG1992 Nuclear export recepto 98.8 0.00067 1.5E-08 86.7 51.2 113 1057-1175 5-134 (960)
50 PF12348 CLASP_N: CLASP N term 98.8 2.8E-07 6.1E-12 109.2 20.0 182 1347-1532 16-210 (228)
51 KOG1240 Protein kinase contain 98.7 1.1E-06 2.4E-11 114.7 25.0 295 1379-1729 423-729 (1431)
52 KOG1060 Vesicle coat complex A 98.7 7.7E-05 1.7E-09 94.3 39.9 400 1332-1762 66-529 (968)
53 PF12348 CLASP_N: CLASP N term 98.7 2.9E-07 6.2E-12 109.1 18.6 201 1775-2000 7-212 (228)
54 COG5064 SRP1 Karyopherin (impo 98.7 8.5E-07 1.8E-11 100.8 19.7 353 1335-1725 69-443 (526)
55 COG5064 SRP1 Karyopherin (impo 98.7 5.3E-07 1.2E-11 102.4 17.2 305 1458-1765 114-442 (526)
56 PF10508 Proteasom_PSMB: Prote 98.6 3E-05 6.6E-10 101.8 35.3 396 1342-1765 43-461 (503)
57 KOG2021 Nuclear mRNA export fa 98.6 0.0044 9.6E-08 78.6 51.0 276 1435-1747 414-748 (980)
58 KOG1059 Vesicle coat complex A 98.6 0.0011 2.4E-08 83.5 45.4 237 1418-1671 142-385 (877)
59 KOG1060 Vesicle coat complex A 98.6 0.00033 7.2E-09 88.8 40.5 379 1351-1769 49-461 (968)
60 KOG1967 DNA repair/transcripti 98.6 0.0089 1.9E-07 78.0 66.4 137 2070-2206 863-1006(1030)
61 KOG1240 Protein kinase contain 98.6 1.3E-06 2.7E-11 114.3 19.9 277 1253-1556 421-715 (1431)
62 KOG1993 Nuclear transport rece 98.6 0.0089 1.9E-07 76.6 57.8 111 1059-1175 2-131 (978)
63 KOG1062 Vesicle coat complex A 98.5 0.00062 1.4E-08 87.1 40.6 303 1421-1770 108-418 (866)
64 KOG2062 26S proteasome regulat 98.5 3.4E-05 7.5E-10 96.6 28.0 280 1234-1552 397-680 (929)
65 KOG4224 Armadillo repeat prote 98.5 1.4E-05 3.1E-10 92.0 21.7 339 1422-1766 87-446 (550)
66 KOG4224 Armadillo repeat prote 98.5 2.1E-05 4.6E-10 90.6 23.0 339 1346-1689 93-448 (550)
67 COG5656 SXM1 Importin, protein 98.5 0.012 2.6E-07 74.7 47.9 362 1333-1701 367-771 (970)
68 KOG1062 Vesicle coat complex A 98.4 0.0046 9.9E-08 79.6 42.9 316 1346-1692 78-419 (866)
69 KOG1020 Sister chromatid cohes 98.4 0.043 9.4E-07 75.4 65.0 153 1394-1554 792-948 (1692)
70 PF12755 Vac14_Fab1_bd: Vacuol 98.4 2.4E-06 5.3E-11 84.3 11.1 93 1395-1526 2-94 (97)
71 KOG1059 Vesicle coat complex A 98.4 0.00093 2E-08 84.2 35.2 247 1690-2018 138-386 (877)
72 KOG1061 Vesicle coat complex A 98.3 0.00082 1.8E-08 86.5 34.3 461 1224-1763 21-486 (734)
73 KOG0414 Chromosome condensatio 98.3 0.051 1.1E-06 73.2 54.0 778 955-1787 190-1083(1251)
74 PF12755 Vac14_Fab1_bd: Vacuol 98.3 3.2E-06 7E-11 83.5 10.1 87 1474-1560 2-91 (97)
75 KOG1061 Vesicle coat complex A 98.3 0.0017 3.6E-08 83.8 36.2 425 1454-1984 45-479 (734)
76 PF12460 MMS19_C: RNAPII trans 98.3 0.0013 2.7E-08 85.0 36.1 318 1382-1745 46-414 (415)
77 COG5240 SEC21 Vesicle coat com 98.3 0.0043 9.3E-08 76.1 37.0 67 2070-2140 487-554 (898)
78 PF12460 MMS19_C: RNAPII trans 98.3 0.00099 2.1E-08 86.0 34.4 275 1230-1507 111-414 (415)
79 COG5240 SEC21 Vesicle coat com 98.3 0.014 3E-07 71.9 40.6 100 1693-1796 261-361 (898)
80 KOG1020 Sister chromatid cohes 98.3 0.081 1.7E-06 72.9 57.1 147 1654-1805 813-961 (1692)
81 KOG1820 Microtubule-associated 98.2 3.9E-05 8.4E-10 102.4 19.4 342 1620-2009 99-458 (815)
82 KOG1822 Uncharacterized conser 98.2 0.13 2.8E-06 72.5 66.7 292 1888-2201 879-1208(2067)
83 KOG1820 Microtubule-associated 98.2 4.8E-05 1E-09 101.5 19.6 364 1254-1656 63-451 (815)
84 KOG2259 Uncharacterized conser 98.0 0.0016 3.6E-08 81.3 27.0 245 1738-2014 199-494 (823)
85 KOG2062 26S proteasome regulat 98.0 0.13 2.7E-06 66.1 48.0 286 1634-1981 394-681 (929)
86 KOG2259 Uncharacterized conser 98.0 0.0044 9.6E-08 77.7 29.7 106 1620-1728 199-313 (823)
87 KOG2956 CLIP-associating prote 97.9 0.00051 1.1E-08 83.1 20.2 195 1335-1533 284-482 (516)
88 KOG4535 HEAT and armadillo rep 97.9 0.0047 1E-07 74.4 26.8 515 1589-2185 9-606 (728)
89 KOG1077 Vesicle coat complex A 97.9 0.2 4.4E-06 63.8 41.7 349 1348-1743 84-451 (938)
90 KOG1078 Vesicle coat complex C 97.8 0.079 1.7E-06 68.5 38.0 144 1575-1729 244-387 (865)
91 KOG0946 ER-Golgi vesicle-tethe 97.8 0.25 5.4E-06 64.0 42.2 194 1334-1549 19-220 (970)
92 TIGR02270 conserved hypothetic 97.8 0.0021 4.6E-08 81.2 24.5 239 1379-1685 55-294 (410)
93 PF13513 HEAT_EZ: HEAT-like re 97.8 2.4E-05 5.3E-10 69.3 5.2 55 1472-1526 1-55 (55)
94 COG1413 FOG: HEAT repeat [Ener 97.8 0.0035 7.6E-08 79.1 26.6 247 1420-1724 43-303 (335)
95 KOG4535 HEAT and armadillo rep 97.8 0.033 7.2E-07 67.4 31.8 498 1392-1948 9-599 (728)
96 COG1413 FOG: HEAT repeat [Ener 97.8 0.0028 6.1E-08 79.9 25.4 185 1577-1802 44-240 (335)
97 KOG0413 Uncharacterized conser 97.8 0.34 7.3E-06 63.6 41.2 122 2071-2196 965-1088(1529)
98 TIGR02270 conserved hypothetic 97.8 0.0034 7.5E-08 79.3 24.4 243 1337-1648 54-296 (410)
99 COG5096 Vesicle coat complex, 97.7 0.22 4.9E-06 66.3 40.8 166 1467-1649 28-196 (757)
100 PF05804 KAP: Kinesin-associat 97.7 0.49 1.1E-05 63.8 44.3 354 1518-1914 268-649 (708)
101 KOG2032 Uncharacterized conser 97.7 0.03 6.6E-07 68.8 29.4 143 1844-1986 258-408 (533)
102 KOG2022 Nuclear transport rece 97.6 0.7 1.5E-05 61.0 59.1 271 1435-1748 439-757 (982)
103 KOG0891 DNA-dependent protein 97.5 1.9 4.2E-05 64.8 65.0 143 2055-2201 913-1059(2341)
104 KOG1058 Vesicle coat complex C 97.5 0.22 4.7E-06 64.2 34.0 173 1621-1803 245-424 (948)
105 KOG2032 Uncharacterized conser 97.5 0.037 8E-07 68.2 26.3 147 1615-1761 254-411 (533)
106 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00017 3.6E-09 63.9 4.7 55 2126-2180 1-55 (55)
107 COG5096 Vesicle coat complex, 97.4 1.2 2.6E-05 59.7 47.4 142 1378-1529 55-196 (757)
108 KOG1058 Vesicle coat complex C 97.4 0.2 4.3E-06 64.5 31.7 429 1222-1728 26-466 (948)
109 KOG4653 Uncharacterized conser 97.3 0.015 3.3E-07 75.4 21.3 223 1928-2181 732-963 (982)
110 PF05804 KAP: Kinesin-associat 97.3 0.052 1.1E-06 72.7 27.3 355 1398-1766 268-649 (708)
111 KOG0168 Putative ubiquitin fus 97.3 0.19 4.1E-06 65.5 30.0 154 1617-1770 209-368 (1051)
112 KOG2956 CLIP-associating prote 97.2 0.011 2.4E-07 72.0 17.6 160 1839-2002 324-485 (516)
113 KOG0168 Putative ubiquitin fus 97.2 0.39 8.4E-06 62.8 31.7 196 1336-1531 166-367 (1051)
114 PF05004 IFRD: Interferon-rela 97.2 0.022 4.7E-07 69.9 20.4 185 1583-1767 50-258 (309)
115 cd00020 ARM Armadillo/beta-cat 97.2 0.0029 6.2E-08 66.3 11.2 107 1421-1527 8-119 (120)
116 KOG4653 Uncharacterized conser 97.1 0.069 1.5E-06 69.6 24.2 145 1621-1766 729-876 (982)
117 COG5116 RPN2 26S proteasome re 97.1 0.017 3.7E-07 71.0 17.6 245 1275-1550 426-675 (926)
118 KOG1077 Vesicle coat complex A 97.0 2.1 4.6E-05 55.2 36.5 283 1223-1532 118-437 (938)
119 cd00020 ARM Armadillo/beta-cat 97.0 0.003 6.5E-08 66.2 9.3 107 2075-2181 8-119 (120)
120 PF05004 IFRD: Interferon-rela 97.0 0.046 1E-06 67.1 20.7 191 1460-1651 45-260 (309)
121 PF13646 HEAT_2: HEAT repeats; 97.0 0.0024 5.3E-08 62.8 8.0 86 2076-2178 1-88 (88)
122 KOG1078 Vesicle coat complex C 97.0 1.5 3.3E-05 57.4 34.0 409 1352-1802 114-530 (865)
123 PF12054 DUF3535: Domain of un 96.9 0.052 1.1E-06 69.9 21.7 143 1859-2012 291-441 (441)
124 PF13646 HEAT_2: HEAT repeats; 96.9 0.0037 8E-08 61.5 9.0 87 1578-1683 1-88 (88)
125 KOG1525 Sister chromatid cohes 96.9 4.7 0.0001 57.7 54.4 252 1378-1636 181-441 (1266)
126 PF12717 Cnd1: non-SMC mitotic 96.9 0.0069 1.5E-07 68.4 11.9 113 1898-2015 1-113 (178)
127 COG5116 RPN2 26S proteasome re 96.9 0.023 5.1E-07 69.8 16.4 284 1196-1514 392-677 (926)
128 PF04826 Arm_2: Armadillo-like 96.8 0.038 8.2E-07 65.4 17.3 84 1460-1544 14-100 (254)
129 KOG1293 Proteins containing ar 96.8 3 6.6E-05 53.9 37.2 422 1398-1878 72-538 (678)
130 KOG0567 HEAT repeat-containing 96.8 0.094 2E-06 59.9 18.9 237 1887-2182 38-280 (289)
131 KOG1822 Uncharacterized conser 96.7 6.8 0.00015 56.5 59.5 193 1336-1530 50-250 (2067)
132 PF12717 Cnd1: non-SMC mitotic 96.6 0.042 9.1E-07 62.1 15.5 109 1858-1970 2-110 (178)
133 KOG4413 26S proteasome regulat 96.6 0.22 4.8E-06 57.8 20.6 258 1898-2184 53-335 (524)
134 PF12719 Cnd3: Nuclear condens 96.6 0.26 5.6E-06 60.8 23.5 109 1885-1994 26-143 (298)
135 PF08506 Cse1: Cse1; InterPro 96.6 0.071 1.5E-06 66.9 18.4 230 1233-1481 113-369 (370)
136 KOG2933 Uncharacterized conser 96.6 0.035 7.6E-07 64.7 14.2 180 1459-1643 89-272 (334)
137 KOG0413 Uncharacterized conser 96.6 5.1 0.00011 53.4 49.7 108 1419-1527 575-684 (1529)
138 KOG2025 Chromosome condensatio 96.5 0.23 4.9E-06 63.6 21.6 224 1278-1526 60-292 (892)
139 KOG0567 HEAT repeat-containing 96.4 0.11 2.3E-06 59.5 16.5 216 1473-1731 51-286 (289)
140 PF05918 API5: Apoptosis inhib 96.3 1 2.3E-05 58.5 26.8 136 1660-1803 26-161 (556)
141 KOG1243 Protein kinase [Genera 96.3 0.05 1.1E-06 70.1 14.7 187 1573-1766 327-515 (690)
142 KOG0414 Chromosome condensatio 96.3 8.7 0.00019 53.1 61.2 164 1689-1890 911-1080(1251)
143 PF14500 MMS19_N: Dos2-interac 96.2 0.61 1.3E-05 55.8 22.7 226 1274-1504 13-255 (262)
144 PF04826 Arm_2: Armadillo-like 96.1 0.17 3.7E-06 60.0 17.3 193 1337-1533 12-210 (254)
145 PF02985 HEAT: HEAT repeat; I 96.0 0.0098 2.1E-07 45.5 4.3 30 1500-1529 1-30 (31)
146 KOG1243 Protein kinase [Genera 95.9 0.033 7.2E-07 71.7 10.6 190 1335-1530 327-517 (690)
147 KOG0946 ER-Golgi vesicle-tethe 95.9 9.8 0.00021 50.2 34.0 185 1738-1932 23-217 (970)
148 PF13001 Ecm29: Proteasome sta 95.8 2.3 5.1E-05 56.3 27.7 368 1298-1691 21-447 (501)
149 KOG1949 Uncharacterized conser 95.8 0.23 5E-06 63.2 16.8 150 1576-1726 174-332 (1005)
150 PF12054 DUF3535: Domain of un 95.7 0.35 7.5E-06 62.4 19.0 78 1434-1511 101-180 (441)
151 PF05918 API5: Apoptosis inhib 95.7 2.7 5.9E-05 54.8 26.5 123 1857-1989 35-157 (556)
152 KOG2081 Nuclear transport regu 95.6 11 0.00024 48.4 36.2 221 1303-1532 202-461 (559)
153 KOG2021 Nuclear mRNA export fa 95.5 13 0.00027 49.0 58.0 90 1879-1971 693-782 (980)
154 COG5218 YCG1 Chromosome conden 95.4 11 0.00024 47.8 42.3 174 1573-1762 88-262 (885)
155 COG5234 CIN1 Beta-tubulin fold 95.4 6.3 0.00014 50.9 26.8 169 1631-1803 208-415 (993)
156 KOG0891 DNA-dependent protein 95.2 35 0.00076 52.3 59.8 73 1462-1534 138-210 (2341)
157 PF13001 Ecm29: Proteasome sta 95.2 3.6 7.9E-05 54.5 26.4 131 2053-2186 300-447 (501)
158 PLN03076 ARF guanine nucleotid 95.2 4.5 9.8E-05 60.2 29.1 308 1895-2203 1147-1514(1780)
159 PF14500 MMS19_N: Dos2-interac 95.2 3.2 6.9E-05 49.8 23.2 235 1744-2014 6-257 (262)
160 cd00256 VATPase_H VATPase_H, r 95.1 5.7 0.00012 50.7 26.2 69 1881-1952 353-425 (429)
161 PF12719 Cnd3: Nuclear condens 95.0 2.2 4.8E-05 52.7 22.3 143 1418-1561 24-180 (298)
162 PF02985 HEAT: HEAT repeat; I 95.0 0.036 7.9E-07 42.4 4.0 30 1620-1649 1-30 (31)
163 KOG1525 Sister chromatid cohes 95.0 30 0.00065 50.0 47.9 288 1507-1805 58-406 (1266)
164 KOG4413 26S proteasome regulat 94.8 11 0.00024 44.4 32.1 356 1229-1648 53-439 (524)
165 KOG2933 Uncharacterized conser 94.8 0.58 1.3E-05 55.0 14.8 135 1391-1531 100-237 (334)
166 KOG0889 Histone acetyltransfer 94.6 52 0.0011 51.3 45.8 655 1402-2176 612-1382(3550)
167 PF10274 ParcG: Parkin co-regu 94.6 0.43 9.4E-06 52.8 12.7 116 1655-1771 36-169 (183)
168 COG5656 SXM1 Importin, protein 94.5 23 0.0005 46.7 52.4 314 1452-1780 402-771 (970)
169 PF08506 Cse1: Cse1; InterPro 94.4 2.4 5.1E-05 53.6 20.5 127 1858-1989 225-370 (370)
170 PF01347 Vitellogenin_N: Lipop 94.4 2.1 4.5E-05 59.1 22.1 168 1379-1562 396-586 (618)
171 KOG2025 Chromosome condensatio 94.3 25 0.00053 46.2 45.6 210 1573-1802 82-292 (892)
172 cd08050 TAF6 TATA Binding Prot 94.3 0.52 1.1E-05 58.9 14.3 87 1597-1685 238-338 (343)
173 PF10274 ParcG: Parkin co-regu 94.2 0.37 8E-06 53.3 11.1 116 2072-2187 36-169 (183)
174 KOG1851 Uncharacterized conser 94.0 25 0.00055 50.3 29.6 151 1378-1530 1526-1680(1710)
175 PF13251 DUF4042: Domain of un 94.0 0.42 9E-06 53.4 11.1 136 1592-1728 2-177 (182)
176 PLN03076 ARF guanine nucleotid 93.8 16 0.00035 54.8 29.3 279 1621-1922 1139-1497(1780)
177 COG5095 TAF6 Transcription ini 93.8 1.7 3.7E-05 50.3 15.3 74 1877-1950 273-357 (450)
178 KOG2549 Transcription initiati 93.8 1.7 3.7E-05 55.1 16.7 109 1866-1974 269-392 (576)
179 KOG1993 Nuclear transport rece 93.7 34 0.00073 45.6 55.0 302 1858-2167 411-754 (978)
180 PF13251 DUF4042: Domain of un 93.3 1 2.2E-05 50.4 12.7 136 1394-1529 1-175 (182)
181 COG5095 TAF6 Transcription ini 93.3 1.7 3.6E-05 50.3 14.3 156 1325-1488 184-360 (450)
182 PF11865 DUF3385: Domain of un 93.1 0.81 1.8E-05 50.5 11.6 148 1496-1649 7-158 (160)
183 KOG1949 Uncharacterized conser 93.1 36 0.00079 44.5 26.6 140 1304-1447 178-329 (1005)
184 KOG1517 Guanine nucleotide bin 92.9 0.97 2.1E-05 60.5 13.5 151 1845-1995 513-672 (1387)
185 PF10363 DUF2435: Protein of u 92.8 0.42 9.2E-06 47.1 7.9 81 2114-2195 5-85 (92)
186 PF11865 DUF3385: Domain of un 92.8 0.71 1.5E-05 50.9 10.5 143 1618-1766 9-157 (160)
187 PF03378 CAS_CSE1: CAS/CSE pro 92.8 13 0.00027 48.3 23.2 240 1611-1919 18-277 (435)
188 PF12074 DUF3554: Domain of un 92.7 7.9 0.00017 48.8 21.4 86 1895-1980 33-122 (339)
189 PF11864 DUF3384: Domain of un 92.6 46 0.00099 44.0 36.6 288 1352-1651 4-334 (464)
190 cd00256 VATPase_H VATPase_H, r 92.5 28 0.00061 44.6 25.3 261 1462-1723 105-423 (429)
191 KOG2549 Transcription initiati 92.3 2.2 4.7E-05 54.2 14.8 76 1611-1686 280-369 (576)
192 KOG2137 Protein kinase [Signal 92.3 3.3 7.2E-05 54.4 17.0 181 1359-1547 294-477 (700)
193 KOG1851 Uncharacterized conser 92.1 80 0.0017 45.7 34.9 93 1902-1994 1504-1598(1710)
194 PF12231 Rif1_N: Rap1-interact 92.0 45 0.00097 42.6 31.1 235 1393-1653 60-308 (372)
195 smart00638 LPD_N Lipoprotein N 92.0 14 0.0003 50.4 24.0 194 1378-1594 357-567 (574)
196 KOG2137 Protein kinase [Signal 91.8 4.8 0.0001 53.0 17.4 168 1576-1748 349-519 (700)
197 PF08167 RIX1: rRNA processing 91.7 3.1 6.7E-05 46.3 14.0 128 2071-2201 22-161 (165)
198 KOG0803 Predicted E3 ubiquitin 91.6 5.2 0.00011 57.3 18.9 259 1888-2187 44-309 (1312)
199 KOG2160 Armadillo/beta-catenin 91.4 6.4 0.00014 47.9 16.9 179 1588-1769 95-285 (342)
200 PF12231 Rif1_N: Rap1-interact 91.4 52 0.0011 42.0 32.1 270 1512-1805 59-353 (372)
201 PF04118 Dopey_N: Dopey, N-ter 91.2 41 0.00089 41.3 23.8 216 1339-1562 12-251 (307)
202 KOG1293 Proteins containing ar 91.2 62 0.0014 42.6 36.4 99 1895-1993 429-532 (678)
203 PF01347 Vitellogenin_N: Lipop 91.2 23 0.0005 48.9 25.1 134 1378-1525 431-586 (618)
204 PF04118 Dopey_N: Dopey, N-ter 90.5 24 0.00053 43.2 21.0 182 1419-1605 53-254 (307)
205 cd08050 TAF6 TATA Binding Prot 90.4 5.7 0.00012 49.8 16.2 86 1865-1950 238-338 (343)
206 PF08623 TIP120: TATA-binding 90.4 0.96 2.1E-05 49.7 8.1 116 2069-2185 4-150 (169)
207 smart00638 LPD_N Lipoprotein N 90.1 36 0.00077 46.5 25.1 134 1378-1525 393-542 (574)
208 KOG1517 Guanine nucleotide bin 90.1 5.6 0.00012 53.8 15.8 137 1633-1769 571-735 (1387)
209 PF08064 UME: UME (NUC010) dom 89.8 3.1 6.7E-05 42.5 10.9 77 1669-1746 26-105 (107)
210 PF08623 TIP120: TATA-binding 89.8 2.7 5.8E-05 46.3 10.9 95 1414-1509 3-116 (169)
211 PF08167 RIX1: rRNA processing 89.7 4.6 0.0001 44.9 13.1 129 1616-1746 22-164 (165)
212 PF08064 UME: UME (NUC010) dom 89.4 3.2 6.9E-05 42.5 10.6 86 1378-1465 11-99 (107)
213 PF03378 CAS_CSE1: CAS/CSE pro 89.4 37 0.00081 44.0 22.7 128 2055-2184 181-326 (435)
214 PF10521 DUF2454: Protein of u 89.4 9.2 0.0002 46.7 16.6 142 1609-1750 109-278 (282)
215 COG5218 YCG1 Chromosome conden 88.5 88 0.0019 40.4 49.7 213 1413-1645 42-263 (885)
216 KOG2160 Armadillo/beta-catenin 88.5 7.3 0.00016 47.5 14.2 137 1391-1528 95-240 (342)
217 KOG4524 Uncharacterized conser 87.9 1.3E+02 0.0028 41.6 43.7 98 1880-1977 798-901 (1014)
218 KOG0889 Histone acetyltransfer 87.1 2.7E+02 0.0058 44.4 50.8 701 1421-2185 985-1777(3550)
219 smart00802 UME Domain in UVSB 86.6 5.8 0.00013 40.3 10.3 85 1378-1464 11-98 (107)
220 PF10521 DUF2454: Protein of u 86.3 7.2 0.00016 47.6 13.1 139 1412-1550 111-278 (282)
221 PF05536 Neurochondrin: Neuroc 86.2 1.4E+02 0.003 40.2 32.0 230 1460-1692 7-266 (543)
222 KOG2213 Apoptosis inhibitor 5/ 85.6 40 0.00087 41.4 17.8 223 1471-1706 37-289 (460)
223 PF10363 DUF2435: Protein of u 84.8 6.3 0.00014 39.0 9.3 84 1461-1549 6-89 (92)
224 COG5098 Chromosome condensatio 84.1 1.6E+02 0.0034 39.0 59.7 121 1481-1605 285-415 (1128)
225 KOG2081 Nuclear transport regu 83.4 1.6E+02 0.0034 38.5 36.7 139 1591-1738 367-508 (559)
226 KOG1048 Neural adherens juncti 83.2 1.2E+02 0.0026 41.0 22.4 108 1656-1765 517-640 (717)
227 KOG1048 Neural adherens juncti 82.7 95 0.0021 42.0 21.2 141 1385-1526 525-682 (717)
228 PF12530 DUF3730: Protein of u 82.6 1E+02 0.0022 36.6 20.1 114 1433-1550 97-216 (234)
229 PF11864 DUF3384: Domain of un 82.2 1.8E+02 0.004 38.4 35.7 147 1616-1769 173-334 (464)
230 PF00514 Arm: Armadillo/beta-c 81.3 2.5 5.3E-05 34.7 4.3 29 1499-1527 12-40 (41)
231 KOG2149 Uncharacterized conser 80.2 17 0.00036 45.2 12.3 109 1894-2002 67-178 (393)
232 PF08389 Xpo1: Exportin 1-like 80.2 26 0.00056 38.0 13.3 125 1352-1482 2-148 (148)
233 smart00802 UME Domain in UVSB 79.6 10 0.00022 38.7 8.7 72 2126-2199 29-100 (107)
234 PF14664 RICTOR_N: Rapamycin-i 78.3 1.9E+02 0.0041 36.8 21.5 212 1428-1648 34-269 (371)
235 COG5101 CRM1 Importin beta-rel 78.1 2.3E+02 0.005 37.1 54.0 82 1874-1955 556-651 (1053)
236 PF08389 Xpo1: Exportin 1-like 77.2 20 0.00042 38.9 11.2 116 1435-1551 3-140 (148)
237 KOG1837 Uncharacterized conser 77.0 4E+02 0.0087 39.2 34.1 68 2110-2177 1539-1606(1621)
238 KOG4524 Uncharacterized conser 76.9 3.2E+02 0.007 38.1 42.9 75 1458-1532 278-352 (1014)
239 KOG2149 Uncharacterized conser 76.5 27 0.00059 43.4 12.6 111 1423-1533 61-175 (393)
240 PF03224 V-ATPase_H_N: V-ATPas 76.4 93 0.002 38.7 18.1 145 1621-1765 107-268 (312)
241 cd03568 VHS_STAM VHS domain fa 76.3 48 0.001 35.9 13.3 95 2107-2201 32-129 (144)
242 PF14225 MOR2-PAG1_C: Cell mor 75.0 2E+02 0.0043 34.7 22.5 32 1573-1606 61-92 (262)
243 PF01603 B56: Protein phosphat 74.8 2.7E+02 0.0058 36.2 23.2 253 1469-1727 101-372 (409)
244 KOG1848 Uncharacterized conser 74.0 1.4E+02 0.003 42.9 19.2 110 1420-1529 997-1133(1610)
245 PF14225 MOR2-PAG1_C: Cell mor 73.7 91 0.002 37.5 16.0 126 2036-2166 112-241 (262)
246 KOG3961 Uncharacterized conser 73.3 8 0.00017 43.2 6.4 94 2110-2204 112-205 (262)
247 KOG1877 Putative transmembrane 73.2 53 0.0011 44.8 15.0 125 1868-1993 39-173 (819)
248 PF08161 NUC173: NUC173 domain 73.1 63 0.0014 37.1 14.0 66 1862-1927 18-83 (198)
249 KOG0803 Predicted E3 ubiquitin 72.9 1.3E+02 0.0028 44.0 19.5 191 1338-1532 42-267 (1312)
250 PF12530 DUF3730: Protein of u 72.6 2.1E+02 0.0045 34.0 22.8 117 1392-1513 97-217 (234)
251 KOG2973 Uncharacterized conser 71.5 2.1E+02 0.0046 34.6 17.5 101 1503-1605 7-111 (353)
252 PF00514 Arm: Armadillo/beta-c 71.4 5.9 0.00013 32.5 3.9 29 2153-2181 12-40 (41)
253 KOG4500 Rho/Rac GTPase guanine 70.8 2.9E+02 0.0063 34.8 22.4 71 2112-2182 315-390 (604)
254 KOG1823 DRIM (Down-regulated i 70.7 5.3E+02 0.011 37.8 45.8 52 1496-1547 561-612 (1364)
255 PF08161 NUC173: NUC173 domain 70.4 92 0.002 35.8 14.5 63 1478-1540 20-82 (198)
256 PF08569 Mo25: Mo25-like; Int 70.2 2.9E+02 0.0063 34.6 24.9 79 1773-1875 207-285 (335)
257 cd03572 ENTH_epsin_related ENT 70.1 40 0.00086 35.3 10.3 74 1692-1765 34-118 (122)
258 KOG2213 Apoptosis inhibitor 5/ 69.2 3E+02 0.0065 34.4 22.1 47 1736-1785 60-106 (460)
259 PF11698 V-ATPase_H_C: V-ATPas 69.2 14 0.0003 38.3 6.7 68 1924-1993 44-114 (119)
260 PF03224 V-ATPase_H_N: V-ATPas 68.8 87 0.0019 39.0 15.3 147 1459-1605 106-269 (312)
261 PF07571 DUF1546: Protein of u 67.8 12 0.00026 37.0 5.9 55 1896-1950 17-76 (92)
262 PF00790 VHS: VHS domain; Int 67.4 85 0.0018 33.9 12.9 95 2107-2201 37-137 (140)
263 PF12765 Cohesin_HEAT: HEAT re 67.1 8.1 0.00018 32.0 3.8 40 1481-1522 2-41 (42)
264 cd03569 VHS_Hrs_Vps27p VHS dom 67.1 82 0.0018 34.1 12.5 95 2107-2201 36-133 (142)
265 cd03572 ENTH_epsin_related ENT 65.9 53 0.0012 34.3 10.3 74 2108-2181 34-118 (122)
266 COG5098 Chromosome condensatio 65.2 4.6E+02 0.0099 35.0 50.6 107 2071-2182 930-1037(1128)
267 cd03561 VHS VHS domain family; 64.7 71 0.0015 34.1 11.5 81 2107-2187 32-117 (133)
268 KOG3961 Uncharacterized conser 63.6 18 0.00039 40.5 6.6 86 1457-1542 113-204 (262)
269 smart00288 VHS Domain present 62.3 82 0.0018 33.7 11.4 95 2107-2201 32-130 (133)
270 KOG2122 Beta-catenin-binding p 62.2 5.7E+02 0.012 37.5 21.1 209 1556-1767 371-602 (2195)
271 PF12830 Nipped-B_C: Sister ch 61.8 27 0.00059 39.8 8.2 91 2110-2204 6-96 (187)
272 PF08767 CRM1_C: CRM1 C termin 60.6 4.2E+02 0.0091 33.1 21.5 116 1417-1532 68-198 (319)
273 PF08713 DNA_alkylation: DNA a 60.0 70 0.0015 37.2 11.6 139 1340-1497 53-194 (213)
274 PF14631 FancD2: Fanconi anaem 59.5 9.1E+02 0.02 36.6 24.8 124 2056-2181 417-541 (1426)
275 cd03568 VHS_STAM VHS domain fa 58.5 1.2E+02 0.0026 33.0 11.8 77 1694-1770 35-114 (144)
276 PF05536 Neurochondrin: Neuroc 58.4 6.1E+02 0.013 34.2 32.5 178 1474-1653 73-266 (543)
277 PF14222 MOR2-PAG1_N: Cell mor 58.3 6.2E+02 0.013 34.2 24.6 395 1142-1562 55-542 (552)
278 PF01603 B56: Protein phosphat 58.1 5.3E+02 0.012 33.4 21.5 185 1619-1803 133-369 (409)
279 PF08569 Mo25: Mo25-like; Int 57.9 4.7E+02 0.01 32.8 30.6 205 1964-2206 75-301 (335)
280 cd03567 VHS_GGA VHS domain fam 57.0 1.3E+02 0.0028 32.5 11.6 92 2107-2201 33-132 (139)
281 PF07539 DRIM: Down-regulated 56.1 68 0.0015 34.6 9.4 81 1499-1585 17-97 (141)
282 KOG2022 Nuclear transport rece 55.7 7.5E+02 0.016 34.4 70.7 151 1617-1770 460-623 (982)
283 PF04388 Hamartin: Hamartin pr 55.6 1.7E+02 0.0036 40.5 15.3 102 2104-2208 62-165 (668)
284 PF12397 U3snoRNP10: U3 small 55.5 68 0.0015 33.6 9.4 74 2108-2184 2-76 (121)
285 PF14868 DUF4487: Domain of un 55.0 6.8E+02 0.015 33.7 24.4 92 2096-2187 463-557 (559)
286 PF07571 DUF1546: Protein of u 54.6 54 0.0012 32.6 7.8 56 1630-1685 17-76 (92)
287 KOG1877 Putative transmembrane 54.2 3.5E+02 0.0077 37.4 17.3 72 1477-1548 75-151 (819)
288 PF12726 SEN1_N: SEN1 N termin 53.5 8.4E+02 0.018 34.4 36.6 119 2067-2185 434-556 (727)
289 COG5234 CIN1 Beta-tubulin fold 52.4 7.4E+02 0.016 33.4 25.7 220 1299-1529 245-492 (993)
290 PF11919 DUF3437: Domain of un 51.5 22 0.00047 35.0 4.4 59 1473-1532 4-62 (90)
291 PF12830 Nipped-B_C: Sister ch 51.0 3.6E+02 0.0077 30.8 14.9 70 1846-1919 10-79 (187)
292 PF08146 BP28CT: BP28CT (NUC21 50.7 1.2E+02 0.0026 33.3 10.5 91 2089-2179 36-144 (153)
293 smart00185 ARM Armadillo/beta- 50.4 19 0.00041 29.1 3.4 29 1499-1527 12-40 (41)
294 KOG4199 Uncharacterized conser 49.9 5.7E+02 0.012 31.4 21.9 156 1339-1529 285-445 (461)
295 PF11698 V-ATPase_H_C: V-ATPas 48.6 46 0.001 34.5 6.3 75 1333-1408 39-115 (119)
296 PF12333 Ipi1_N: Rix1 complex 47.8 1.1E+02 0.0024 31.0 9.0 58 282-339 5-65 (102)
297 PF00790 VHS: VHS domain; Int 47.6 2.3E+02 0.0051 30.5 12.1 91 1679-1770 26-122 (140)
298 cd03567 VHS_GGA VHS domain fam 47.1 2.7E+02 0.0059 30.1 12.2 75 1695-1769 37-119 (139)
299 cd03561 VHS VHS domain family; 46.7 2.8E+02 0.0062 29.6 12.5 90 2054-2144 18-115 (133)
300 KOG1837 Uncharacterized conser 43.9 1.4E+03 0.031 34.2 35.6 77 1844-1920 1541-1617(1621)
301 smart00288 VHS Domain present 42.5 3.4E+02 0.0074 29.0 12.2 77 1694-1770 35-115 (133)
302 KOG2973 Uncharacterized conser 41.7 7.4E+02 0.016 30.3 19.6 102 1699-1802 6-109 (353)
303 KOG3687 Tuberin - Rap/ran-GTPa 41.4 1.2E+03 0.026 32.7 24.2 24 1854-1877 483-506 (1697)
304 cd03565 VHS_Tom1 VHS domain fa 41.1 3.1E+02 0.0066 29.7 11.6 96 2106-2201 32-134 (141)
305 KOG2122 Beta-catenin-binding p 40.9 1.5E+03 0.033 33.7 27.9 72 1843-1914 529-601 (2195)
306 PF14911 MMS22L_C: S-phase gen 40.3 8.9E+02 0.019 30.8 20.6 101 2110-2214 254-357 (373)
307 PF11701 UNC45-central: Myosin 40.3 1.6E+02 0.0035 32.5 9.6 117 1431-1547 16-138 (157)
308 cd03569 VHS_Hrs_Vps27p VHS dom 40.0 4E+02 0.0087 28.9 12.3 77 1694-1770 39-118 (142)
309 KOG2005 26S proteasome regulat 39.8 1.1E+03 0.024 31.8 34.5 102 1575-1684 639-740 (878)
310 PF12333 Ipi1_N: Rix1 complex 39.7 1.1E+02 0.0024 31.1 7.5 59 1611-1669 3-65 (102)
311 PF08767 CRM1_C: CRM1 C termin 39.6 8.5E+02 0.018 30.4 22.1 139 1860-1998 43-198 (319)
312 KOG2011 Sister chromatid cohes 39.2 1.4E+03 0.031 32.9 21.7 139 1456-1600 280-430 (1048)
313 COG5657 CSE1 CAS/CSE protein i 38.6 1.3E+03 0.029 32.3 42.0 106 1062-1175 9-131 (947)
314 KOG1848 Uncharacterized conser 38.5 1.1E+03 0.023 34.8 18.2 107 1699-1805 1000-1133(1610)
315 KOG2011 Sister chromatid cohes 38.4 9.9E+02 0.021 34.4 18.2 113 1414-1526 280-397 (1048)
316 PF08713 DNA_alkylation: DNA a 36.9 2E+02 0.0044 33.3 10.6 128 1308-1452 59-187 (213)
317 KOG3915 Transcription regulato 36.0 9.7 0.00021 46.6 -0.8 18 842-859 561-578 (641)
318 PF12765 Cohesin_HEAT: HEAT re 35.6 61 0.0013 27.0 4.0 24 1420-1443 18-41 (42)
319 PF14868 DUF4487: Domain of un 34.2 1.3E+03 0.029 31.1 26.9 71 1677-1747 247-317 (559)
320 PF11935 DUF3453: Domain of un 34.1 8.7E+02 0.019 28.9 16.6 73 1507-1606 1-73 (239)
321 smart00185 ARM Armadillo/beta- 33.4 57 0.0012 26.2 3.6 28 2154-2181 13-40 (41)
322 cd00197 VHS_ENTH_ANTH VHS, ENT 33.2 2.6E+02 0.0055 29.0 9.4 68 1378-1446 37-112 (115)
323 PF14676 FANCI_S2: FANCI solen 32.5 5.8E+02 0.013 28.2 12.2 117 1864-1989 38-156 (158)
324 PF09324 DUF1981: Domain of un 32.2 2.1E+02 0.0045 28.1 7.8 67 2113-2179 18-85 (86)
325 cd03565 VHS_Tom1 VHS domain fa 31.9 4.6E+02 0.01 28.4 11.2 74 1378-1451 38-117 (141)
326 cd00197 VHS_ENTH_ANTH VHS, ENT 31.9 3.6E+02 0.0077 27.9 10.2 44 1693-1736 34-77 (115)
327 smart00567 EZ_HEAT E-Z type HE 31.6 56 0.0012 24.6 3.0 30 1472-1511 1-30 (30)
328 PF12612 TFCD_C: Tubulin foldi 29.4 2.5E+02 0.0055 32.1 9.4 129 2072-2203 5-139 (193)
329 PF14664 RICTOR_N: Rapamycin-i 29.0 1.3E+03 0.029 29.4 26.9 221 1379-1605 26-269 (371)
330 COG5369 Uncharacterized conser 27.7 1.6E+02 0.0036 37.8 7.6 132 1517-1648 407-545 (743)
331 PF12397 U3snoRNP10: U3 small 27.3 2.7E+02 0.0059 29.1 8.5 72 2070-2143 2-76 (121)
332 cd07064 AlkD_like_1 A new stru 26.6 1.1E+03 0.023 27.5 14.7 141 1339-1496 47-188 (208)
333 KOG3067 Translin family protei 26.0 1.3E+02 0.0028 33.2 5.5 35 842-876 11-45 (226)
334 PF12612 TFCD_C: Tubulin foldi 24.8 7.2E+02 0.016 28.4 11.9 128 1416-1549 3-139 (193)
335 KOG4199 Uncharacterized conser 24.7 1.4E+03 0.03 28.3 27.2 144 1621-1764 285-442 (461)
336 KOG1789 Endocytosis protein RM 24.6 2.2E+03 0.049 30.7 18.9 113 2071-2184 2000-2118(2235)
337 KOG3723 PH domain protein Melt 24.2 1E+03 0.022 31.2 13.3 80 1866-1950 184-264 (851)
338 cd06561 AlkD_like A new struct 24.2 9.8E+02 0.021 27.1 13.2 131 2040-2185 43-173 (197)
339 PF09324 DUF1981: Domain of un 23.3 3.1E+02 0.0067 26.9 7.3 67 1458-1524 17-84 (86)
340 PF14676 FANCI_S2: FANCI solen 23.3 4E+02 0.0088 29.4 8.9 103 208-312 51-156 (158)
341 COG5101 CRM1 Importin beta-rel 21.8 2E+03 0.044 29.1 55.1 147 1459-1605 482-648 (1053)
342 PF12783 Sec7_N: Guanine nucle 21.6 3.7E+02 0.008 29.9 8.6 96 265-363 47-148 (168)
343 COG5537 IRR1 Cohesin [Cell div 21.6 2.1E+03 0.045 29.1 16.7 212 1415-1628 205-449 (740)
344 KOG1222 Kinesin associated pro 21.5 1.8E+03 0.039 28.5 24.3 49 1887-1935 347-398 (791)
345 KOG2199 Signal transducing ada 21.3 9.4E+02 0.02 30.3 11.9 125 1659-1784 9-136 (462)
346 PF11919 DUF3437: Domain of un 20.4 1.5E+02 0.0032 29.4 4.4 57 2127-2184 4-60 (90)
347 PF03130 HEAT_PBS: PBS lyase H 20.4 66 0.0014 23.8 1.5 26 1981-2013 1-26 (27)
348 PF04078 Rcd1: Cell differenti 20.3 7.5E+02 0.016 29.7 10.7 139 2052-2202 115-255 (262)
349 PF14631 FancD2: Fanconi anaem 20.0 3.3E+03 0.072 31.0 30.7 156 1482-1641 418-576 (1426)
No 1
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-54 Score=521.09 Aligned_cols=562 Identities=50% Similarity=0.759 Sum_probs=525.5
Q ss_pred HHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHH
Q 000098 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2256)
Q Consensus 1201 L~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~a 1280 (2256)
++....++...+....+.|++..| .|+.++||..|++++..+++.+|.+.+..++|.+++.|++. . ++.+|+++
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-~----~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-H----NDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-h----hHHHhhhh
Confidence 344444554444455577877777 99999999999999999999999999999999999999873 2 56899999
Q ss_pred HHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000098 1281 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360 (2256)
Q Consensus 1281 v~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~ 1360 (2256)
+.+.|.++.|+...||+...+++.++..+.+|++.+|++++.|+++++..........+..++..+.+..+...|+++++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999887765555566666666666778999999999
Q ss_pred HHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHH
Q 000098 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2256)
Q Consensus 1361 ~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa 1440 (2256)
++++++++.|...+.++.++..+...+.++++...|+++..++...+..+|..++||+..++|.++.+++|....||+++
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2256)
Q Consensus 1441 ~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~ 1520 (2256)
..+.+.++..++.++++.++|.++..+.+..|+++.++++.+|.|++++|++++.++|+++|.+.+.|.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2256)
Q Consensus 1521 ~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l 1600 (2256)
.++..++.++.|++|+.++|.|++++.||+.++.+|++.|+.++|++++++|+++.++|++.+++.+++..++++++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHH
Q 000098 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2256)
Q Consensus 1601 ~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~ 1680 (2256)
+|||.++.+++++.||++.|+|.+...+.|+.|++|..+.++++.+.+.+|..++++.+|++++.+.++.....|.++++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999988999999999999999999999999999999999999999999999899999999999999888889999999
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000098 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2256)
Q Consensus 1681 ~L~~i~~~~g~~~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al 1758 (2256)
.+++++...|.++...+++.++...... ++.+|.+.+++|..++..+|.+|.+|+.++++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999887664 67799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 000098 1759 GAGHVLVEHY 1768 (2256)
Q Consensus 1759 ~al~~iv~~~ 1768 (2256)
++...++.++
T Consensus 557 ~~~~~~~~~~ 566 (569)
T KOG1242|consen 557 EAGEVEVLNY 566 (569)
T ss_pred hhhhhhhccc
Confidence 8877765443
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-47 Score=482.69 Aligned_cols=956 Identities=17% Similarity=0.204 Sum_probs=645.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHH--------HHHHhhcCCCC
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYDF 1128 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~--------~~~w~~~~~~~ 1128 (2256)
..+.+|+++++|||+.+|+.|+++|++.+... . .......+..+.+++++|++| ...|..++.+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-----~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE-----P--LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc-----c--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46889999999999999999999999887441 1 334445567777888877764 44888888888
Q ss_pred CCCh-HhHHHhh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhh
Q 000098 1129 GTDY-SGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2256)
Q Consensus 1129 ~~~~-~~ll~~l-~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~ 1205 (2256)
++++ +.+|..+ .++...||++.|+++|++++. .|+.|+++++.|+++.. +++...|+.+.+.|..+.
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----------S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----------SPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----------CCCcchhHHHHHHHHhhh
Confidence 8888 8888855 567899999999999999975 66789999999999831 345579999999999999
Q ss_pred hhhccCChh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhc--cc---cccchHHHHHHHhhccCCChhhhhhhh
Q 000098 1206 DVLRTKDLP---VIMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RD---NVSLLFPIFENYLNKKASDEEKYDLVR 1277 (2256)
Q Consensus 1206 ~~~~~~~~~---~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g--~~---~~~~Ll~~l~~~L~~~~~~~~~~~~vr 1277 (2256)
..+++...+ .+...+ .++++|++..||..++.+..+++.... +. .+..++|.+...+.....+.+. ..-
T Consensus 147 ~~~~~~~~~~~~~l~~lf-~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~--~~a 223 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLF-SQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD--DAA 223 (1075)
T ss_pred hhhccccchhHHHHHHHH-HHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch--HHH
Confidence 999886554 344443 689999887799999999888876553 11 2334444444433321111111 112
Q ss_pred hHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcC-CCHHHHH
Q 000098 1278 EGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS-DKYGERR 1356 (2256)
Q Consensus 1278 ~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~-~~~~vR~ 1356 (2256)
..++++|.++++..+ +.+. +.+..++...+....+. -+..+|.
T Consensus 224 ~~~l~~l~El~e~~p---k~l~---------------------------------~~l~~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 224 KSALEALIELLESEP---KLLR---------------------------------PHLSQIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HHHHHHHHHHHhhch---HHHH---------------------------------HHHHHHHHHHHHHhhcccccHHHHH
Confidence 233333333332210 0011 11222233333322222 2567777
Q ss_pred HHHHHHHHHHhhhCcccchh-----hcHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHH
Q 000098 1357 GAAFGLAGVVKGFGISSLKK-----YGIAATLREGLADR---NSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2256)
Q Consensus 1357 ~Aa~~L~~lv~~~g~~~~~~-----~~il~~L~~~l~~~---~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~ 1428 (2256)
.|...|..+++.. +...+. ..+++.+...+.+. ++|..- .-
T Consensus 268 ~ALe~ivs~~e~A-p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~------------------------------d~ 316 (1075)
T KOG2171|consen 268 LALEFLVSLSEYA-PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE------------------------------DD 316 (1075)
T ss_pred HHHHHHHHHHHhh-HHHhhhchhhhccHHHHHHHhcCCcccchhhccc------------------------------cc
Confidence 7777777666652 111110 02333333332211 011000 00
Q ss_pred cCCC-cHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH
Q 000098 1429 FSDQ-VVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2256)
Q Consensus 1429 l~D~-~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~ 1506 (2256)
..|+ ...-...|.+++++++.++++..+ ..+++.+-.++.+.+|+.|++++.+|+.+++++++.+...+++|++.+++
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~ 396 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLN 396 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 1111 123455788999999999998775 78888888999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhc
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2256)
+++|+||+||.+||.++++++..+.. +++. .+...+.|.+...+.
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p-~iqk----------------------------------~~~e~l~~aL~~~ld 441 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQP-EIQK----------------------------------KHHERLPPALIALLD 441 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcH-HHHH----------------------------------HHHHhccHHHHHHhc
Confidence 99999999999999999999987753 2210 011223333344333
Q ss_pred C-CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhH-HHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHH
Q 000098 1587 E-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSW 1661 (2256)
Q Consensus 1587 d-~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~-~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~ 1661 (2256)
+ .++++..+|+.++.++.+- ...+.+.||++.+|. .+..+.+.+.+.+|+.+..+|+.++.+.++. |++.+||.
T Consensus 442 ~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~ 520 (1075)
T KOG2171|consen 442 STQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPL 520 (1075)
T ss_pred ccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3 3567888888888888874 355778999999999 6666677889999999999999999999876 78899999
Q ss_pred HHHHhhcCCC---HHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHhHhhhChhH
Q 000098 1662 LLDALKSDNS---NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-------SHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2256)
Q Consensus 1662 Ll~~L~~~~~---~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l-------~~~~~~vR~~al~~l~~La~~~g~~f 1731 (2256)
|.+.|++..+ ...|.....+++.+..+.|++.|.+.-..+++.+ .+.+...|...+..|+.+|+.+|++|
T Consensus 521 L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F 600 (1075)
T KOG2171|consen 521 LKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDF 600 (1075)
T ss_pred HHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhh
Confidence 9999987442 2345556678999999999987755544444432 33477899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCc
Q 000098 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2256)
Q Consensus 1732 ~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~ 1811 (2256)
.||++.++|+++....-.. ++- .++++ ...+.-.++.|....
T Consensus 601 ~p~L~~Vmppl~~ta~~~p-~~~------------~~d~~-------d~e~~~~~~~~e~~~------------------ 642 (1075)
T KOG2171|consen 601 APFLPVVMPPLLKTARLDP-DVA------------LSDEE-------DEEEEQDLDGWEVVE------------------ 642 (1075)
T ss_pred HhHHHHHhHHHHHhhccCC-ccc------------CcCch-------hhhhccccccchhhc------------------
Confidence 9999999999998765221 100 00000 000000112222100
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHH-H
Q 000098 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT-L 1890 (2256)
Q Consensus 1812 ~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~-L 1890 (2256)
..+++.. | .......-+..|...++.++..+...+.+|+...+.. +
T Consensus 643 ------~~~~e~~-------------~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v 689 (1075)
T KOG2171|consen 643 ------LGDKENI-------------G--------------IRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMV 689 (1075)
T ss_pred ------cCCceee-------------e--------------eeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0000000 0 0111223467788888888888888888888887772 3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhh------Ccc----chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhh
Q 000098 1891 ISSLASSSSERRQVAGRALGELVRKL------GER----VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQL 1959 (2256)
Q Consensus 1891 ~~~L~~~~~~~R~~A~~aL~~lv~~~------~~~----~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l 1959 (2256)
....-..+..+|..|+.++..+++.. ++. ....+.|.+...+.++ ++.+-..+..++++.+..+|...+
T Consensus 690 ~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L 769 (1075)
T KOG2171|consen 690 PLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCL 769 (1075)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccC
Confidence 23334567899999999999998743 222 2456677777777644 678888899999999999996544
Q ss_pred -HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCch-HHHHHHHHHHHhhhcccch
Q 000098 1960 -LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVL 2037 (2256)
Q Consensus 1960 -~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-~~al~~L~~il~~~~~~~l 2037 (2256)
.++...+...+...+.+...+.+..- +.+ .+ ++++.. +..+. .....++
T Consensus 770 ~~~~~~~~~~~~~~~~l~~~~~~~~r~-----------~~~-~e----------ed~d~~eee~~~-------e~d~~ll 820 (1075)
T KOG2171|consen 770 NEDGLEALLGGLLAQLLQHFKRMQDRQ-----------EED-DE----------EDDDIEEEEDLD-------EQDAYLL 820 (1075)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhh-hh----------hhhhhHHHHHHh-------hhhHHHH
Confidence 23444444444433322211111100 000 00 000000 00000 0000111
Q ss_pred hhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch---hcHHHHH
Q 000098 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLV 2114 (2256)
Q Consensus 2038 p~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~---~~~~~ll 2114 (2256)
......++++++..|..|.|++..++|.++..+.++....|..+.++++++++.+++ .+.+.++
T Consensus 821 -------------~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~ 887 (1075)
T KOG2171|consen 821 -------------DAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFL 887 (1075)
T ss_pred -------------HHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 123456788889999999999999999999999887666699999999999998865 5678899
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhccCCCCc
Q 000098 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD------STTVAAAWEALSRVVASVPKEV 2188 (2256)
Q Consensus 2115 ~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d------~~Vr~~A~~aL~~l~~~l~~e~ 2188 (2256)
|.++..+.|.+|++|++|.|.+|.++++.+.+|.+.+...++.|...+..++ ...++||.+|++++++..+...
T Consensus 888 p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i 967 (1075)
T KOG2171|consen 888 PLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRI 967 (1075)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccC
Confidence 9999999999999999999999999999999999999999999998887654 3588999999999998776532
Q ss_pred -hhchHHHHHHHHhhhhhhhhhhccCCc-c-----ccCCcCCC--CcchhhHHHHHHHhhccCCCCCCC
Q 000098 2189 -QPSYIKVIRDAISTSRDKERRKKKGGP-I-----LIPGFCLP--KALQPLLPIFLQVFVLYTFSPSSL 2248 (2256)
Q Consensus 2189 -l~~lv~~l~~~l~~~~d~~r~~~~g~~-~-----~l~g~~lp--~~i~~~Lp~~~~~l~~~~~~~~~~ 2248 (2256)
.+..++.+...|....|.+.+.....- . .=|..+-| ..+..++.++.++++++.-..++-
T Consensus 968 ~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~~~~ 1036 (1075)
T KOG2171|consen 968 PVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEPRST 1036 (1075)
T ss_pred cHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCccch
Confidence 667777777777666665443211110 0 01222223 367788888999998886666554
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-36 Score=363.17 Aligned_cols=645 Identities=17% Similarity=0.227 Sum_probs=458.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHH-------------------HHHHH
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKS-------------------VAEAA 1117 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~-------------------~~~~~ 1117 (2256)
+++.++|.+++|||.++|+.|+..|.+.. +.||+.++..+.+++ +....... ...-.
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl-~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~ 76 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVL-ANDNSSDVARMAAGLQLKNSLTAKDPERKQQY 76 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHH-hccCCcHHHHHHHhHHHhhhhccCCHHHHHHH
Confidence 35678888899999999999999999875 457777777777765 33333333 33346
Q ss_pred HHHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHH-----------------
Q 000098 1118 EDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYI----------------- 1177 (2256)
Q Consensus 1118 ~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~-~~~~~~l~~L~~~~~----------------- 1177 (2256)
..+|..+..+.++++ ..++..|+++.+..+..|+|++|.++. +-| ..|++++..|.....
T Consensus 77 ~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGy 156 (859)
T KOG1241|consen 77 QQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGY 156 (859)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 779998888888888 888899999999999999999999974 233 455555555544311
Q ss_pred --hhcCCC----------------CCCCCCCcchhHHHHHHHHHhhhhhc----cC-ChhHhHHHHHHhhcCCCCHHHHH
Q 000098 1178 --RDIGLG----------------GDNVDAGWLGRQGIALALHSAADVLR----TK-DLPVIMTFLISRALADTNADVRG 1234 (2256)
Q Consensus 1178 --~~~~~~----------------~~~~~~~~~~R~~~~~aL~~l~~~~~----~~-~~~~l~~~lv~~~l~D~~~~VR~ 1234 (2256)
+.+.|+ ....+++-.+|.++..||.+..++.. ++ ..+.+|+.+ +++.+.++.+||.
T Consensus 157 ice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvv-cEatq~~d~~i~~ 235 (859)
T KOG1241|consen 157 ICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVV-CEATQSPDEEIQV 235 (859)
T ss_pred HHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeee-eecccCCcHHHHH
Confidence 111111 11234566899999999999888644 33 245577765 7899999999999
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHHHhhc-c-CCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCC
Q 000098 1235 RMLNAGIMIIDKHGRDNVSLLFPIFENYLNK-K-ASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312 (2256)
Q Consensus 1235 ~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~-~-~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~ 1312 (2256)
+++.|...++..+ ++.+-+++++.|.. + .....++|.|.-.++++|.++|+.- +. +....-+.
T Consensus 236 aa~~ClvkIm~Ly----Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE------iD-~~~e~~e~---- 300 (859)
T KOG1241|consen 236 AAFQCLVKIMSLY----YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE------ID-LAIEYGEA---- 300 (859)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH------HH-HHHHHHHH----
Confidence 9999999999876 55555665553321 0 1122345689999999999999641 11 11111111
Q ss_pred CHHHHHHHHHhhHHhHHhh-cCchHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHH
Q 000098 1313 SEAVQRAVSSCLSPLMQSM-QDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385 (2256)
Q Consensus 1313 ~~~Vq~~~~~~L~~lv~~~-~~~~~~~l~~Ll~~L~~~------~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~ 1385 (2256)
+..-++|-...+ ....+.++|.|++.|.++ ++|..-++|..||..+++..|++.+. .++|++.+
T Consensus 301 -------~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee 371 (859)
T KOG1241|consen 301 -------VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEE 371 (859)
T ss_pred -------hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHH
Confidence 111111111111 234567888888888862 36999999999999999999999987 89999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHH
Q 000098 1386 GLADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLL 1464 (2256)
Q Consensus 1386 ~l~~~~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll 1464 (2256)
.++++ ||+.|+++.++||++.++.. ..+.|++.+.+|.++..+.|+...||+++++++++++..++....
T Consensus 372 ~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~-------- 442 (859)
T KOG1241|consen 372 NIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII-------- 442 (859)
T ss_pred hcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc--------
Confidence 99988 89999999999999999976 568999999999999999999999999999999999876653211
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC------------c
Q 000098 1465 KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK------------N 1532 (2256)
Q Consensus 1465 ~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~------------~ 1532 (2256)
+ ..+++.+++.+.+.|+| +|+|..++||++..+++.+. +
T Consensus 443 -------------------------n---~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t 493 (859)
T KOG1241|consen 443 -------------------------N---QELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT 493 (859)
T ss_pred -------------------------c---HhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Confidence 0 12334555666666666 36666666666666664431 1
Q ss_pred hhHHhHHHHHHhhhCCCC---hhHH-HHHHHHHh-cccccCCChhhHhhHHHHHHH----hhcC--CCH-------HHHH
Q 000098 1533 PEIASLVPTLLMGLTDPN---DHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVHR----GLRE--RSA-------ETKK 1594 (2256)
Q Consensus 1533 ~~i~~lv~~Ll~~l~d~~---~~vr-~al~~L~~-~~~~~~~~~~~l~~i~p~L~~----~L~d--~~~-------~vR~ 1594 (2256)
|.++.++..|++....++ ...| .++++|.. +.+....-.+....+.+.+.. .+.+ .+. +++.
T Consensus 494 ~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 494 PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQS 573 (859)
T ss_pred hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHH
Confidence 234555555555544332 2334 24444443 222222222223333333222 1110 111 3333
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCC
Q 000098 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2256)
Q Consensus 1595 ~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~ 1670 (2256)
.-|..++.+...++ .++.++.+.+|..++..++. .+..+.+.|+-++++++..+|+. |++.+.|+|...|++..
T Consensus 574 ~Lc~~Lq~i~rk~~--~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~ 651 (859)
T KOG1241|consen 574 LLCNTLQSIIRKVG--SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ 651 (859)
T ss_pred HHHHHHHHHHHHcc--ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch
Confidence 44455555554333 37788999999999999987 56678999999999999999976 78899999999998877
Q ss_pred CHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHh
Q 000098 1671 SNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2256)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~ 1745 (2256)
++.+...+..-+++++++++.+ +.+.+|..+++.++++ +..||...+++||.++.+.|.+|.+|++.++|.+.+.
T Consensus 652 e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~a 731 (859)
T KOG1241|consen 652 EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7766666666689999999987 6689999999999987 7889999999999999999999999999999998776
Q ss_pred cC---CC--------CHHHHHHHHHHHHHHHHHhhc
Q 000098 1746 LA---DE--------NESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1746 L~---d~--------~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
-+ |+ ...+|++++++...|++.++.
T Consensus 732 s~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~ 767 (859)
T KOG1241|consen 732 SSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKT 767 (859)
T ss_pred HhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 52 22 135899999999999888774
No 4
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=1.3e-38 Score=396.29 Aligned_cols=318 Identities=25% Similarity=0.348 Sum_probs=254.3
Q ss_pred hHHHhHHHHHHHhhhcCCcchhhhhhHHHHHHHHHhhHhhcCcHHHHHHHHHHHHHHHHhccCccchHHHHHHHhhhchh
Q 000098 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2256)
Q Consensus 346 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l~~~l~al~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2256)
||||+.+++||..++. . .+|.+|+++++|+++||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred hH-HHHHHHHHHHHHHh---hhhhhhhhhhhHHHHHHHHHHHhhccccc-----hhHHHHHHHHHHHhhhhhhHHHhhhH
Q 000098 426 EA-LRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2256)
Q Consensus 426 ~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~a~~~l~~~~~~~~~~~~~~~~ 496 (2256)
++ +||+|+.++|.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++... ...+.+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~--~~~~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSW--KLDKIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccc--cchhhhh--hh
Confidence 87 99999999999999 55677889999999999999999999665 4455554441111 1112222 33
Q ss_pred HHHHHhhhcCCCCc-chhhhhhc-CChHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000098 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2256)
Q Consensus 497 ~~~~~~~~~~k~~f-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vr~~a~~ 572 (2256)
...|.++.++||+| +++|+|+| .++||.+|+++++++++..+..+..++. ..+|+++|+|++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47888888999997 67999999 6688889999999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-cHHHHHHHHHHHHhhhhhhhhccCCCCCCcccCCCCCCCCchHHHHHHHHhhhhccccC-------Cc
Q 000098 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALAR-------GP 644 (2256)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~ 644 (2256)
.+++++.++|+ ++..++.+||+|+.... ..++++. ...........+.+++ |..+..... .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~-------~~~~~s~--~~~~~~~~~~~v~~ai-~~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSE-------TGDKESS--AENSSDKNLSPVLSAI-CLAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcc-------ccccccc--cccccccccccchHHH-HhhhHhhhccccchhHHH
Confidence 99999999999 69999999999998663 2222220 1111112233355555 333322111 36
Q ss_pred chhhhHhhhcCCCccccccccccchhHHHHhHHhhCCChHHHHhhcHH
Q 000098 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2256)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~~~~~~~dp~~lv~~~~~ 692 (2256)
++++++|++||||+|+. +++|++|| +| +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~--~~-~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLC--QR-AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHH--HH-cCCCHHHHHHhcCC
Confidence 78999999999999984 47999995 33 99999999999963
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=337.58 Aligned_cols=890 Identities=17% Similarity=0.211 Sum_probs=610.6
Q ss_pred ccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHH
Q 000098 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2256)
Q Consensus 1209 ~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La 1288 (2256)
+++....+++.++ +.+.|.|++|+..|+.|..-++..-+.++++.+...+..-+- .+.+ ..|..+-..|....
T Consensus 41 d~dSe~kvv~~lL-klL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~---s~ke---q~rdissi~Lktvi 113 (1233)
T KOG1824|consen 41 DDDSERKVVKMLL-KLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNML---SGKE---QLRDISSIGLKTVI 113 (1233)
T ss_pred cccchhHHHHHHH-HHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhc---cchh---hhccHHHHHHHHHH
Confidence 3444566777774 799999999999999998888877666666655544433221 1112 35665666665555
Q ss_pred hhhccCC------cchHHHHHHHHHHcCC--CCHHHHHHHHHhhHHhHHhhcCch----HHHHHHHHHHHhcCCCHHHHH
Q 000098 1289 KHLAKDD------PKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERR 1356 (2256)
Q Consensus 1289 ~~l~~~~------~~i~~il~~Ll~~L~~--~~~~Vq~~~~~~L~~lv~~~~~~~----~~~l~~Ll~~L~~~~~~~vR~ 1356 (2256)
.++++.. .-++.+.+++..++.. +...++-.+.+.+......++.-. ..++..++.++.. ....+|+
T Consensus 114 ~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s-~R~aVrK 192 (1233)
T KOG1824|consen 114 ANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQS-PRLAVRK 192 (1233)
T ss_pred hcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccC-hHHHHHH
Confidence 5555421 1134555555555432 233355445555555555554322 3444455555543 3578999
Q ss_pred HHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc---CCCc
Q 000098 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF---SDQV 1433 (2256)
Q Consensus 1357 ~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l---~D~~ 1433 (2256)
.|.++|+.++...+..... .++..+.+.+.+......-...+.+++.++...|..|..|+..++|.+.+.. +..+
T Consensus 193 kai~~l~~la~~~~~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~d 270 (1233)
T KOG1824|consen 193 KAITALGHLASSCNRDLYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDD 270 (1233)
T ss_pred HHHHHHHHHHHhcCHHHHH--HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCc
Confidence 9999999999887765554 6777777777766666666678999999999999999999999999999988 6778
Q ss_pred HHHHHHHHHHHHHHHhhhhHhh---HHhHHHHHHHhc----------------------------------cCCChhHHH
Q 000098 1434 VAVREAAECAARAMMSQLSAQG---VKLVLPSLLKGL----------------------------------EDKAWRTKQ 1476 (2256)
Q Consensus 1434 ~~VR~aa~~al~~l~~~l~~~~---v~~ilp~Ll~~L----------------------------------~~~~w~~R~ 1476 (2256)
++.|+.+.++++.+....+.+- ++.++..+++++ +|-+|.+|+
T Consensus 271 DELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRR 350 (1233)
T KOG1824|consen 271 DELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHH
Confidence 9999999999999998887643 245555555543 012599999
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH
Q 000098 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a 1556 (2256)
+|+.++..+.....+.+...+..+-|.++..+++.+..|+.....++..+....+.. . ..+.|++. .+
T Consensus 351 aAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~-~--------~~~~d~d~-~e-- 418 (1233)
T KOG1824|consen 351 AAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPV-I--------EVLADNDA-ME-- 418 (1233)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC-c--------ccccCchh-hh--
Confidence 999999999999999888888999999999999999999999999998888765531 1 11112211 11
Q ss_pred HHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCH--H
Q 000098 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP--E 1634 (2256)
Q Consensus 1557 l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~--~ 1634 (2256)
. ..+.+....-......++..+.+.+++++..+|..+...+..+... -|..+.+|++.++|++...++|.+. .
T Consensus 419 --~-~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~--lp~~l~~~~~slvpgI~~~l~DkSsss~ 493 (1233)
T KOG1824|consen 419 --Q-GGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINV--LPGALAQHIPSLVPGIIYSLNDKSSSSN 493 (1233)
T ss_pred --c-cCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHh--CcchhhhcccccchhhhhhcCCccchHH
Confidence 0 1111111111224556778888888888888888888888777763 4567889999999999999998654 3
Q ss_pred HHHHHHHHHHHHHHhhCcCc----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc----------HhHHHHHHHH
Q 000098 1635 VRSVAARAIGSLIRGMGEEN----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----------TVYFEHILPD 1700 (2256)
Q Consensus 1635 VR~~a~~aL~~L~~~~g~~~----~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g----------~~~l~~ll~~ 1700 (2256)
.+..+...+..+....+++. .+.+.|.+.....+ +-+.+-..|......+++.+. ..++..+...
T Consensus 494 ~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d-~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~ 572 (1233)
T KOG1824|consen 494 LKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGD-PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDC 572 (1233)
T ss_pred HHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcC-chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHH
Confidence 44444444433333334443 33455555544443 555555555554555554432 1256666666
Q ss_pred HHHhcc--CCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc----cchh
Q 000098 1701 IIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT----TSLP 1774 (2256)
Q Consensus 1701 ll~~l~--~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~----~~~~ 1774 (2256)
.++.+. +.+.+||+.++.|+|.+...+|+.....++.++|.+++.+..+ ..|..|.+|+..|+..--. ....
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~l~ 650 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSPLDIDLSPVLT 650 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhccceeehhhhHH
Confidence 666654 5689999999999999999999988899999999999999864 5799999999888643211 1234
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 000098 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2256)
Q Consensus 1775 ~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2256)
.++|.+...+...+...|..+..++..++...++.. +.+..+-++..+-...+
T Consensus 651 ~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~---------------------------~~~~~e~vL~el~~Lis 703 (1233)
T KOG1824|consen 651 EILPELASFLRKNQRALRLATLTALDKLVKNYSDSI---------------------------PAELLEAVLVELPPLIS 703 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------------cHHHHHHHHHHhhhhhh
Confidence 477777777766666778888888877764432211 11112223333434456
Q ss_pred CCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCC------------------------------------
Q 000098 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS------------------------------------ 1898 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~------------------------------------ 1898 (2256)
+++..+-+.|+.+++.+..+.|..+..+...+++.++..+.++-
T Consensus 704 esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~P 783 (1233)
T KOG1824|consen 704 ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAP 783 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCC
Confidence 66677777788888877777665555444444444444444321
Q ss_pred -HH---------HHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCC--ChhhHHhHHHHHHHHHHhhChhhhHhhHhhH
Q 000098 1899 -SE---------RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2256)
Q Consensus 1899 -~~---------~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~l~~l 1966 (2256)
++ .-...+.|.+.++..+++.. ..+...+.+-+..+ +...|.-+...+|++....+.. +...+
T Consensus 784 V~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s-~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~ 858 (1233)
T KOG1824|consen 784 VYEQVTDGLHKQAYYSIAKCVAALTCACPQKS-KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNEL 858 (1233)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhccccc-hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhh
Confidence 00 01123445555555555322 11222222223323 3445566667777776544322 23445
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHH-HHHHHHHHHhhhcccchhhhhhhhh
Q 000098 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT-ALDGLKQILSVRTTAVLPHILPKLV 2045 (2256)
Q Consensus 1967 i~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~-al~~L~~il~~~~~~~lp~li~~L~ 2045 (2256)
-..+.+++..++++|+.+|+.|+|.+.- ...+.++|.+++.++.+...++ -+..+++++..
T Consensus 859 ~~~iieaf~sp~edvksAAs~ALGsl~v----gnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~-------------- 920 (1233)
T KOG1824|consen 859 KDTIIEAFNSPSEDVKSAASYALGSLAV----GNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVS-------------- 920 (1233)
T ss_pred HHHHHHHcCCChHHHHHHHHHHhhhhhc----CchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHH--------------
Confidence 5677889999999999999999998763 3467789999998887654443 33455554421
Q ss_pred cCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCC
Q 000098 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125 (2256)
Q Consensus 2046 ~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~ 2125 (2256)
.--..+.++.+.||..|++.+++..+..|...++|+|.++.. ....++|.|-..+.++.
T Consensus 921 -----------------~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~----epesLlpkL~~~~~S~a 979 (1233)
T KOG1824|consen 921 -----------------ASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLI----EPESLLPKLKLLLRSEA 979 (1233)
T ss_pred -----------------hccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhC----ChHHHHHHHHHHhcCCC
Confidence 111256789999999999999999999999999999999984 35789999999999999
Q ss_pred hhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCC---CCchhchHHHHHHH
Q 000098 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP---KEVQPSYIKVIRDA 2199 (2256)
Q Consensus 2126 ~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~---~e~l~~lv~~l~~~ 2199 (2256)
+..|..++.++......-+..+.++..+.+..++..+.|+|..||+.|..+++..++.-| +|.++.++|.++..
T Consensus 980 ~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 980 SNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred cchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 999999999998888777788999999999999999999999999999999999998766 47788888887643
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-30 Score=335.42 Aligned_cols=796 Identities=19% Similarity=0.229 Sum_probs=552.2
Q ss_pred hhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcC-CCCHHHHHHHHHhhHHhHHhh----cCch-HHHHHHHHHHHhc
Q 000098 1275 LVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQSM----QDEA-PTLVSRLLDQLMK 1348 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~-~~~~~Vq~~~~~~L~~lv~~~----~~~~-~~~l~~Ll~~L~~ 1348 (2256)
.+|..|-+.|.++... ++ +++.|...+. .+++.+|..++--+..++..+ ..+. ..+-..++..+.+
T Consensus 19 ~vr~~Ae~~l~~~~~~-----~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~ 90 (1075)
T KOG2171|consen 19 EVRRQAEEALETLAKT-----EP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS 90 (1075)
T ss_pred hHHHHHHHHHHHhhcc-----cc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 5688888888776643 11 4455554443 456788876665555444433 2233 3455567888888
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHH
Q 000098 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2256)
Q Consensus 1349 ~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~ 1428 (2256)
+....+|+.-+..++.+++...++ +++++++++.+...+. ++..||.|+..|..+.+.+|..+.||+..+++.+.++
T Consensus 91 E~~~~vr~k~~dviAeia~~~l~e--~WPell~~L~q~~~S~-~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~ 167 (1075)
T KOG2171|consen 91 ETEPSVRHKLADVIAEIARNDLPE--KWPELLQFLFQSTKSP-NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQT 167 (1075)
T ss_pred ccchHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHhcCC-CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHh
Confidence 888999999999999999999888 4569999999999887 7899999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhh--Hhh---HHhHHHHHHHhcc----CCChhHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000098 1429 FSDQVVAVREAAECAARAMMSQLS--AQG---VKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2256)
Q Consensus 1429 l~D~~~~VR~aa~~al~~l~~~l~--~~~---v~~ilp~Ll~~L~----~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2256)
++|++..||-++.+|+..++..++ +.. +..++|.++.-+. +++-..-..++++|..+++..|+.+.+++..
T Consensus 168 ~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ 247 (1075)
T KOG2171|consen 168 MTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ 247 (1075)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 999998899999999999998875 222 3567777765553 4555566788999999999999999999999
Q ss_pred HHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcC------chhHHhHHHHHHhhhCCCC--------------h---hH-
Q 000098 1500 IVPKLTEVLTD--THPKVQSAGQTALQQVGSVIK------NPEIASLVPTLLMGLTDPN--------------D---HT- 1553 (2256)
Q Consensus 1500 Ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~~i~------~~~i~~lv~~Ll~~l~d~~--------------~---~v- 1553 (2256)
|+....+..++ -+..+|..|.+.|..+++... .++.+.+++.++..+.+-. + ..
T Consensus 248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~ 327 (1075)
T KOG2171|consen 248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR 327 (1075)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence 99998888765 468899999999999888722 1355788888888775321 0 01
Q ss_pred --HHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCC
Q 000098 1554 --KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631 (2256)
Q Consensus 1554 --r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~ 1631 (2256)
..+++.+.. +-.....++.+++.+...+.+.+|.-|.++..+++.+++ +.++.+.+.++.+++.+.+.++||
T Consensus 328 ~A~~~lDrlA~----~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--Gc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 328 AAEQALDRLAL----HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE--GCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred HHHHHHHHHHh----cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhcCCC
Confidence 135555542 111123456678888999999999999999999999998 566778889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHH----
Q 000098 1632 IPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR---- 1703 (2256)
Q Consensus 1632 ~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~---- 1703 (2256)
+|+||.+|+.|+|.++..++++ +.+.+.|.|...+.+..+.++...++.++-.+...+.++.+.+++|.+++
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988865 33456678888888777778888889999888888887755555554444
Q ss_pred -hccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCC-H---HHHHHHHHHHHHHHHHhhccchhchHH
Q 000098 1704 -NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-E---SVRDAALGAGHVLVEHYATTSLPLLLP 1778 (2256)
Q Consensus 1704 -~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~-~---~VR~~Al~al~~iv~~~~~~~~~~llp 1778 (2256)
..++..+.+|+.++.+++.+|.+.+..|.||.+.+||.+...+...+ . .+|...++++..|....|.+.+...-
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a- 560 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA- 560 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH-
Confidence 45677999999999999999999999999999999999999887554 3 34445555555554444433221111
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcH
Q 000098 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSL 1858 (2256)
Q Consensus 1779 ~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~ 1858 (2256)
...+++++.+- + ...|.+.
T Consensus 561 --------------~eliqll~~~~----------------------------------~-------------~~~~~dd 579 (1075)
T KOG2171|consen 561 --------------EELIQLLLELQ----------------------------------G-------------SDQDDDD 579 (1075)
T ss_pred --------------HHHHHHHHhhc----------------------------------c-------------cchhhcc
Confidence 11122222210 0 0011122
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHH---hhhcCCC
Q 000098 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPIL---SRGLKDP 1935 (2256)
Q Consensus 1859 ~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L---~~~l~d~ 1935 (2256)
..|...+..|..++...++.+.+++|.+++.+.+......+. -...-....... +....+. .+.= .-+++..
T Consensus 580 ~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~-~~~d~~d~e~~~---~~~~~e~-~~~~~~e~~~I~Ts 654 (1075)
T KOG2171|consen 580 PLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDV-ALSDEEDEEEEQ---DLDGWEV-VELGDKENIGIRTS 654 (1075)
T ss_pred ccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcc-cCcCchhhhhcc---ccccchh-hccCCceeeeeeeh
Confidence 356667788999999999999999999999987665422110 000000000000 0000000 0000 0011122
Q ss_pred ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHh------chh----hHHhH
Q 000098 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIP-TIRTALCDSILEVRESAGLAFSTLFKSA------GMQ----AIDEI 2004 (2256)
Q Consensus 1936 ~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~-~l~~~L~D~~~~VR~~A~~al~~l~~~~------g~~----~~~~i 2004 (2256)
....+..+|..|+++..... ..+.||..+++. .+....-..+..||.+|+.++..+.... |+. .+..+
T Consensus 655 vl~eK~~A~~~Lv~~a~~lk-~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~ 733 (1075)
T KOG2171|consen 655 VLDEKETACEALGEYAKELK-EAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAI 733 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 23456678888887766554 346789888888 3333445677899999999988887543 222 23445
Q ss_pred HHHHHHhhccCCchH---HHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCC-cc-ccHhhHHHHH
Q 000098 2005 VPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LN-FHLGTILPAL 2079 (2256)
Q Consensus 2005 lp~Ll~~L~~~~~~~---~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~-l~-~~l~~Ilp~L 2079 (2256)
.|.++..++.+.+.+ ..++++.+.+ +++|.. +. ++...+.-.+
T Consensus 734 ~~~l~~~l~~E~e~~vl~~vl~~f~~~i--------------------------------~~~G~~~L~~~~~~~~~~~~ 781 (1075)
T KOG2171|consen 734 RPALIKALEEEPETEVLSEILESFAECI--------------------------------EVMGDNCLNEDGLEALLGGL 781 (1075)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHH--------------------------------HhcCcccCCcHHHHHHHHHH
Confidence 566666666554432 2222333322 223311 11 1111111111
Q ss_pred HHh----h------------CCCCHH-----------HHHHHHHHHHHHHhhcch---hcHHHHHHHHHhhcCCCChhhH
Q 000098 2080 LSA----M------------GDDDMD-----------VQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIR 2129 (2256)
Q Consensus 2080 l~~----l------------~~~~~~-----------vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~~~~~~vR 2129 (2256)
... . .+.+.+ +-..+.+.+..+++..+. +.+..+.|.+...+.+..+--|
T Consensus 782 ~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r 861 (1075)
T KOG2171|consen 782 LAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVAR 861 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHH
Confidence 110 0 011111 222233333334443322 5578889999999988775559
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCC
Q 000098 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2256)
Q Consensus 2130 ~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e 2187 (2256)
+-|...++.+++.++....+|...+++.++..+.|.+++||++|...+|.++...+..
T Consensus 862 ~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~ 919 (1075)
T KOG2171|consen 862 QWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGED 919 (1075)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999999999999999999999999999999999887765
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=344.63 Aligned_cols=705 Identities=17% Similarity=0.198 Sum_probs=495.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc-cc--cCCChhhHhhHHHHHHHh
Q 000098 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT-FV--NTVDAPSLALLVPIVHRG 1584 (2256)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~-~~--~~~~~~~l~~i~p~L~~~ 1584 (2256)
...+++.+|.++.+.+.++-.. |.+...+-.++..+...+..+|.+...+.+.. -. ..........+...+.++
T Consensus 22 s~Spn~~~~~~~~~~leq~~~~---pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~ 98 (885)
T KOG2023|consen 22 SQSPNSETRNNVQEKLEQFNLF---PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHG 98 (885)
T ss_pred ccCCChHHHHHHHHHHHHHhcc---cchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhh
Confidence 3456889999999999888541 33322211222223333445565555555421 11 123335666777788899
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC--------cCchH
Q 000098 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--------EENFP 1656 (2256)
Q Consensus 1585 L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g--------~~~~~ 1656 (2256)
+.+.++-+|.....++..+++. . -..+.+.++|.|.+++..++....+.|+.|+..+++... ...++
T Consensus 99 lgd~~~lIr~tvGivITTI~s~----~-~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 99 LGDASPLIRATVGIVITTIAST----G-GLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred ccCchHHHHhhhhheeeeeecc----c-ccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 9999998887766666665542 1 234568999999999999999999999999999988542 12466
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHH
Q 000098 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2256)
Q Consensus 1657 ~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~ 1733 (2256)
.++|.+++..++ .+++.|..|..++..++-..... .++.++..+....+|.++.||...|.+|..+-.+..+.+.|
T Consensus 174 ~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 174 IMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred HhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 799999998887 58889999999988877554443 56889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-----hccchhchHHHHHhhcCCCCHHHHHHHHHHHH--------
Q 000098 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG-------- 1800 (2256)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~-----~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg-------- 1800 (2256)
+++.++..++...+|.+++|-..|++-+-.+.+.- -...++.++|.|.++|.-....+ -+++
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~-----~LL~~~eeD~~v 327 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI-----ILLKNNEEDESV 327 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH-----HHhcCccccccC
Confidence 99999999999999999998777766655554321 11245668888888874221111 0111
Q ss_pred ---------HHHHh-hcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000098 1801 ---------DLLFK-VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1870 (2256)
Q Consensus 1801 ---------~ll~~-~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~ 1870 (2256)
.+-.. ..|....+. +++++||+.+. --.+.+|++|.+++.++..
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~-~eDdddDe~DD-------------------------dD~~~dWNLRkCSAAaLDV 381 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDAD-DEDDDDDEDDD-------------------------DDAFSDWNLRKCSAAALDV 381 (885)
T ss_pred CchhhhccchhhhchhccCccccc-ccccccccccc-------------------------ccccccccHhhccHHHHHH
Confidence 00000 000000000 00000000000 0123457889888888877
Q ss_pred HHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChhhHHhHHHHH
Q 000098 1871 IVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGL 1947 (2256)
Q Consensus 1871 l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL 1947 (2256)
++...+. +++|.++|.+.+.|.+.+|.+|+.+.-+||.+++.+... ++++++|.+.+.+.|..|-+|...|++|
T Consensus 382 Lanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 382 LANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred HHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeH
Confidence 7665554 688999999999999999999999999999999987654 6889999999999999999999999999
Q ss_pred HHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHH---hHHHHHHHhhccCCc-----hH
Q 000098 1948 SEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID---EIVPTLLHALEDDQT-----SD 2019 (2256)
Q Consensus 1948 ~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~---~ilp~Ll~~L~~~~~-----~~ 2019 (2256)
+......-.+.-..|+..++..+...+.|.+..|+++|+.||+++.+..|.+.++ .++..|..++..-.. --
T Consensus 459 sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY 538 (885)
T KOG2023|consen 459 SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY 538 (885)
T ss_pred hhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH
Confidence 9877665444445788889999999999999999999999999999987765443 233333333322111 11
Q ss_pred HHHHHHHHHHhhh------cccchhhhhhhhhcCchhh----hHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCC----
Q 000098 2020 TALDGLKQILSVR------TTAVLPHILPKLVHLPLSA----FNAHALGALAEVAGPGLNFHLGTILPALLSAMGD---- 2085 (2256)
Q Consensus 2020 ~al~~L~~il~~~------~~~~lp~li~~L~~~p~~~----~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~---- 2085 (2256)
.|+..|.+-+|+. -+.++|.|+.++...+-+. --.+++.+++..+|..|.||...++...++.+..
T Consensus 539 DAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~ 618 (885)
T KOG2023|consen 539 DAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQL 618 (885)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHH
Confidence 3445555555432 2457788888776555332 2467899999999999999998888777765541
Q ss_pred -----CC----HHHHH---HHHHHHHHHHhhcch-----hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhh
Q 000098 2086 -----DD----MDVQS---LAKEAAETVTLVIDE-----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2256)
Q Consensus 2086 -----~~----~~vr~---~a~~al~~l~~~~~~-----~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~ 2148 (2256)
.+ ...|+ .+++-+..+.+..+. -.-..++..++.++.|+-|++|++|+.++|.+...+...+.
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~ 698 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI 698 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 11123 233444444444432 11234778899999999999999999999999999988999
Q ss_pred hhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHhhh-hhhhhhhccCCc--ccc--CCcCC
Q 000098 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS-RDKERRKKKGGP--ILI--PGFCL 2223 (2256)
Q Consensus 2149 ~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~~~-~d~~r~~~~g~~--~~l--~g~~l 2223 (2256)
|+..++++.+-..++...-.|.+||+||+|.+..+++.+.. .++.++...|-.. ....-...+-.+ +++ .|++.
T Consensus 699 p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~-~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~ 777 (885)
T KOG2023|consen 699 PNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK-QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC 777 (885)
T ss_pred chHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC
Confidence 99999999888777777889999999999999999998754 3444433222222 110000011111 233 68999
Q ss_pred CCcchhhHHHHHHHhhc-----cCCCCCCCCccccccC
Q 000098 2224 PKALQPLLPIFLQVFVL-----YTFSPSSLPKHCVCLI 2256 (2256)
Q Consensus 2224 p~~i~~~Lp~~~~~l~~-----~~~~~~~~~~~~~~~~ 2256 (2256)
|.-++|.+..|.+-+++ +.+++|+++++|+|.+
T Consensus 778 Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~m 815 (885)
T KOG2023|consen 778 PEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNM 815 (885)
T ss_pred HHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHh
Confidence 99999999999999999 5899999999999964
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-31 Score=318.10 Aligned_cols=745 Identities=17% Similarity=0.204 Sum_probs=511.2
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhccCC
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKD 1212 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~~~ 1212 (2256)
..+++.-.+++..+|+.+-..+-.. ..+|+.-.-+.-.|.+. ..+....|..+.+.|++-...-....
T Consensus 16 ~~lLk~s~Spn~~~~~~~~~~leq~-~~~pdfnnYL~~IL~~~-----------~~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 16 AQLLKNSQSPNSETRNNVQEKLEQF-NLFPDFNNYLIYILIRA-----------KSEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHH-hcccchhceeeEEEecc-----------cccchhHHHHhhhhHhccccccccCC
Confidence 3455555688999999988777433 33666322222222211 12345679999999998766433332
Q ss_pred hhHhHHHHH---HhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHh
Q 000098 1213 LPVIMTFLI---SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289 (2256)
Q Consensus 1213 ~~~l~~~lv---~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~ 1289 (2256)
-+.+..|+- .++++|.++.+|......+..++..+|-.+|++++|.+.++|..++. ...++|+.+|.++|+
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~------n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDY------NTCEGAFGALQKICE 157 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcc------cccchhHHHHHHHHh
Confidence 233333332 37999999999999888888888999999999999999999986321 456889999999997
Q ss_pred hh----ccC--CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHH---HhcCCCHHHHHHHHH
Q 000098 1290 HL----AKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ---LMKSDKYGERRGAAF 1360 (2256)
Q Consensus 1290 ~l----~~~--~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~---L~~~~~~~vR~~Aa~ 1360 (2256)
.- +.+ ...+..+++++++..+++++.+|..+..|+..++....+.+-..++..++. |.+++++.||+..+.
T Consensus 158 Dsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~ 237 (885)
T KOG2023|consen 158 DSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR 237 (885)
T ss_pred hhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 42 221 234788999999999999999999999999888765555444444444443 336778999999999
Q ss_pred HHHHHHhhhCcccchh-hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--ccCchHhHHHHHHHHHHHcC--C----
Q 000098 1361 GLAGVVKGFGISSLKK-YGIAATLREGLADRNSAKRREGALLAFECLCEKL--GRLFEPYVIQMLPLLLVAFS--D---- 1431 (2256)
Q Consensus 1361 ~L~~lv~~~g~~~~~~-~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l--~~~~~pyv~~llp~ll~~l~--D---- 1431 (2256)
++.-++....+..... ..|++++.+..++. |..+--+|+..+-.+++.. ...+.||+.+++|.++..+. |
T Consensus 238 alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH
Confidence 9999988765443321 26888888888887 5557777888888888864 35689999999999987762 0
Q ss_pred -----C---------------------------------------------cHHHHHHHHHHHHHHHhhhhHhhHHhHHH
Q 000098 1432 -----Q---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2256)
Q Consensus 1432 -----~---------------------------------------------~~~VR~aa~~al~~l~~~l~~~~v~~ilp 1461 (2256)
+ +.+.|+.++.+++.++..++.+-++.++|
T Consensus 317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~P 396 (885)
T KOG2023|consen 317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLP 396 (885)
T ss_pred HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHH
Confidence 0 13689999999999998888888899999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc----hhHHh
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIAS 1537 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~----~~i~~ 1537 (2256)
.+.+.|.++.|.+|.+++.++|++|+++.+.+.++||.++|.++.+|.|..|-||.-.||+|+++++++.+ .++..
T Consensus 397 lLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p 476 (885)
T KOG2023|consen 397 LLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP 476 (885)
T ss_pred HHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753 35677
Q ss_pred HHHHHHhhhCCCChhHHHHHH-HHHhc-ccccCCChhhHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHHhhhcCCCCc
Q 000098 1538 LVPTLLMGLTDPNDHTKYSLD-ILLQT-TFVNTVDAPSLALLVPIVHRGLRE---RSAETKKKAAQIVGNMCSLVTEPKD 1612 (2256)
Q Consensus 1538 lv~~Ll~~l~d~~~~vr~al~-~L~~~-~~~~~~~~~~l~~i~p~L~~~L~d---~~~~vR~~a~~~l~~L~~~l~~~~~ 1612 (2256)
++..+++.+-|.++.|++|.. ++... .-......|.+..++..+...++- ++-. -...+++.++..++..-+
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl---ILYDAIgtlAdsvg~~Ln 553 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL---ILYDAIGTLADSVGHALN 553 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccee---hHHHHHHHHHHHHHHhcC
Confidence 888888889999999986422 22210 000111123444444444444431 2222 234577888876655444
Q ss_pred chhhhhhhhHHHHHh---hcCCCHHHHHHHHHHHHHHHHhhCcCchH-------HHHHHHHHHhhc------CCC-----
Q 000098 1613 MIPYIGLLLPEVKKV---LVDPIPEVRSVAARAIGSLIRGMGEENFP-------DLVSWLLDALKS------DNS----- 1671 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~~~---L~d~~~~VR~~a~~aL~~L~~~~g~~~~~-------~lip~Ll~~L~~------~~~----- 1671 (2256)
-..|++.+||.|.+- +.|.+.++ -.-.+|+++++.++|..+.+ .++..+.++++. +..
T Consensus 554 ~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pd 632 (885)
T KOG2023|consen 554 KPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPD 632 (885)
T ss_pred cHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCC
Confidence 456899999988775 45666655 36789999999999877433 233333322221 110
Q ss_pred HHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc
Q 000098 1672 NVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2256)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L 1746 (2256)
..--..+..-++.+++++|.. .-..++..+.+.++|+-+.||+.++..+|.+.+.+.+...|++..++|.+...+
T Consensus 633 kdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl 712 (885)
T KOG2023|consen 633 KDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL 712 (885)
T ss_pred cceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC
Confidence 000122345567777777765 124577888889999999999999999999999999999999999999999877
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcch
Q 000098 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2256)
Q Consensus 1747 ~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~ 1826 (2256)
.-++-.+...|..|++.|.-.++.+.-+.+-|.+
T Consensus 713 ~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl---------------------------------------------- 746 (885)
T KOG2023|consen 713 NPENISVCNNAIWAIGEIALKMGLKMKQYVSPVL---------------------------------------------- 746 (885)
T ss_pred ChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHH----------------------------------------------
Confidence 7777778888999988887666544211111111
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-CCHHHHH
Q 000098 1827 EAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQ 1903 (2256)
Q Consensus 1827 e~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~ 1903 (2256)
..|+.. +......+-+...-+++.++-.+|..+.++++.++......++. .+.+.+.
T Consensus 747 --------------------~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~ 806 (885)
T KOG2023|consen 747 --------------------EDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKE 806 (885)
T ss_pred --------------------HHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHH
Confidence 111111 11112223333444667777778888889999998887766653 2445677
Q ss_pred HHHHHHHHHHHhhCccchhchHHH--HhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhH
Q 000098 1904 VAGRALGELVRKLGERVLPSIIPI--LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2256)
Q Consensus 1904 ~A~~aL~~lv~~~~~~~l~~llp~--L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~l 1966 (2256)
.|.+.+..++..-...+...++-. ....+.++....|+....-|...-...|......+..++
T Consensus 807 sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 807 SAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 888888777765544443322211 122344444445555544443333334443333333333
No 9
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=3.4e-28 Score=285.02 Aligned_cols=631 Identities=15% Similarity=0.170 Sum_probs=433.2
Q ss_pred hHHHHHHHhh-hcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhh-----------------hhc-cCCcHHHHHH
Q 000098 1056 PNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW-----------------IAV-HDPEKSVAEA 1116 (2256)
Q Consensus 1056 ~~~~~~ll~~-~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~a~-~d~~~~~~~~ 1116 (2256)
..++..|.++ .+|||+++|..|+.+|.+... .||.+++.++...+ +.. +..|++-.+-
T Consensus 3 ~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~---~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 3 KSEFRCLGKNHVLSPDPNARLRAEAQLLELQS---GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred hHHHHHHHhcccCCCCCCccccHHHHHHHhcc---ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 4577788876 699999999999999998862 35555555555444 211 2334444444
Q ss_pred HHHHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CC-CcHHHHHHHHHHHH-----------------
Q 000098 1117 AEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLY----------------- 1176 (2256)
Q Consensus 1117 ~~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~-~~~~~~l~~L~~~~----------------- 1176 (2256)
+..+|..+..+.++++ ...+..|.++.+..-..+|+.+|+++.. .| ..|++++..+....
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 7889998888888888 7788999999999999999999999853 33 46666666665431
Q ss_pred -H-hhcCCC----------------CCCCCCCcchhHHHHHHHHHhhhhh----ccC-ChhHhHHHHHHhhcCCCCHHHH
Q 000098 1177 -I-RDIGLG----------------GDNVDAGWLGRQGIALALHSAADVL----RTK-DLPVIMTFLISRALADTNADVR 1233 (2256)
Q Consensus 1177 -~-~~~~~~----------------~~~~~~~~~~R~~~~~aL~~l~~~~----~~~-~~~~l~~~lv~~~l~D~~~~VR 1233 (2256)
. ++..|+ ....++.-.+|.++..||.....+. ..+ ..+++++.. +++.+..+.+++
T Consensus 160 y~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv-ceatq~~d~e~q 238 (858)
T COG5215 160 YHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV-CEATQGNDEELQ 238 (858)
T ss_pred HHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee-ehhccCCcHHHH
Confidence 1 111121 0122345678999999988854443 322 356677775 789999999999
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHhhcc--CCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHc-C
Q 000098 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK--ASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL-N 1310 (2256)
Q Consensus 1234 ~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~--~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L-~ 1310 (2256)
.+++-|...++..+ +..+-+++|+.|... .....++|.|.-.++++|+++|+.-- | +. .-.+.+ .
T Consensus 239 ~aafgCl~kim~Ly----Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEei--d--~~----~e~~~~pe 306 (858)
T COG5215 239 HAAFGCLNKIMMLY----YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEI--D--GE----MEDKYLPE 306 (858)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh--h--hH----HHHhhccc
Confidence 99999999888765 444446677766431 33344567899999999999997511 1 00 001111 1
Q ss_pred CCCHHHHHHHHHhhHHhHHhh-cCchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHH
Q 000098 1311 TPSEAVQRAVSSCLSPLMQSM-QDEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL 1383 (2256)
Q Consensus 1311 ~~~~~Vq~~~~~~L~~lv~~~-~~~~~~~l~~Ll~~L~~------~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L 1383 (2256)
.|- |. ..+ .....+.+|.++..|.+ +++|.+.++|+.||..+++..|+..+. +++.++
T Consensus 307 ~p~---qn----------~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~Fv 371 (858)
T COG5215 307 VPA---QN----------HGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFV 371 (858)
T ss_pred Cch---hh----------cchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHH
Confidence 111 11 000 11234566677766665 347999999999999999999988876 699999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh----h-HH
Q 000098 1384 REGLADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----G-VK 1457 (2256)
Q Consensus 1384 ~~~l~~~~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~----~-v~ 1457 (2256)
.+++.++ +|+.|+++.++||.+.++.. ..+.+|+.+.+|.++..+.|+.-.|.+++++|+++++.+...- + +.
T Consensus 372 Eqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~ 450 (858)
T COG5215 372 EQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLV 450 (858)
T ss_pred HHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 9999988 89999999999999999876 4578999999999999999999999999999999998776531 1 12
Q ss_pred hHHHHHHHhccCC-------ChhHHHHHHHHHHHHHhhC---hhhHhhhhhhHHHHHHHhh--cCCCHHHHHHHHHHHHH
Q 000098 1458 LVLPSLLKGLEDK-------AWRTKQSSVQLLGAMAYCA---PQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQ 1525 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~-------~w~~R~~a~~~Lg~la~~~---p~~l~~~L~~Ivp~L~~~L--~D~~~~VR~aA~~aL~~ 1525 (2256)
......+.++.|. .|+.- .+...+++.. +..+.++++.|+..|++.- .+.+...|.++..+|+.
T Consensus 451 ~~vsa~liGl~D~p~~~~ncsw~~~----nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgt 526 (858)
T COG5215 451 LEVSASLIGLMDCPFRSINCSWRKE----NLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGT 526 (858)
T ss_pred HHHHHHHhhhhccchHHhhhHHHHH----hHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 3334444555442 33321 2222333332 4456778888888888763 46677899999999999
Q ss_pred HHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1526 l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
+.....+... +++-.+..... ++..+++..+.+ ++..=.+.+ -.++...-+..+..+..
T Consensus 527 li~~~~d~V~-~~~a~~~~~~~---~kl~~~isv~~q--------------~l~~eD~~~---~~elqSN~~~vl~aiir 585 (858)
T COG5215 527 LILICPDAVS-DILAGFYDYTS---KKLDECISVLGQ--------------ILATEDQLL---VEELQSNYIGVLEAIIR 585 (858)
T ss_pred HHhhcchhHH-HHHHHHHHHHH---HHHHHHHHHhhh--------------hhhhHHHHH---HHHHHHHHHHHHHHHHH
Confidence 9876654221 11111111111 111123322221 000000000 01333344444444444
Q ss_pred hcCCCCcchhhhhhhhHHHHHhhcCC-CHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 000098 1606 LVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2256)
Q Consensus 1606 ~l~~~~~l~~~l~~Ll~~L~~~L~d~-~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~ 1681 (2256)
..+.++.+.-+++|..++..+... ...+-.....+++++...+++. |.+.++|++...|. ..+..+...+..-
T Consensus 586 --~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~d~~v~~~avgl 662 (858)
T COG5215 586 --TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CTDRFVLNSAVGL 662 (858)
T ss_pred --hcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-chhHHHHHHHHHH
Confidence 345677888889999999999876 3456677888999999888765 67889999999984 4555555555566
Q ss_pred HHHHHHHhcHh---HHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc
Q 000098 1682 LSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2256)
Q Consensus 1682 L~~i~~~~g~~---~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L 1746 (2256)
++++...+|.+ +.+.++..+.+.++++ +..+|...+++||.++...|..|.+|++.++-.+.+.-
T Consensus 663 vgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 663 VGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 89999999988 5578899999999886 77899999999999999999999999999887776543
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.97 E-value=6.6e-23 Score=253.61 Aligned_cols=1014 Identities=18% Similarity=0.208 Sum_probs=655.5
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhh
Q 000098 1134 GLFKALSHSNYNVRLAAAEALATALDE-----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVL 1208 (2256)
Q Consensus 1134 ~ll~~l~~~~~~vR~~aa~ala~~~~~-----~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~ 1208 (2256)
.+++..+++|.+.|--|.--|..=+.. ..|+...++..+..... +.+-++..-|..++.-++.-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~----------D~ngEVQnlAVKClg~lvsKv 78 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE----------DKNGEVQNLAVKCLGPLVSKV 78 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh----------ccCcHHHHHHHHHHHHHHhhc
Confidence 578888899999998887666544422 33555556666555421 344577877888888887777
Q ss_pred ccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc--------ccccchHHHHHHHhhccCCChhhhhhhhhHH
Q 000098 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--------DNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2256)
Q Consensus 1209 ~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~--------~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~a 1280 (2256)
+.+++..+++-| +.++-...+.-|....-.....+.+..+ ..+..+.|.|-..+.. .+..+.++--+
T Consensus 79 ke~~le~~ve~L-~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~----qe~~sai~~e~ 153 (1233)
T KOG1824|consen 79 KEDQLETIVENL-CSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISK----QEDVSAIKCEV 153 (1233)
T ss_pred hHHHHHHHHHHH-hhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhh----cccchhhHHHH
Confidence 777788888887 4454444444555444444444444332 2233444554444332 11223466666
Q ss_pred HHHHHHHHhhhccCCcchH-HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhc-CchHHHHHHHHHHHhcCCCHHHHHHH
Q 000098 1281 VIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGA 1358 (2256)
Q Consensus 1281 v~~L~~La~~l~~~~~~i~-~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~-~~~~~~l~~Ll~~L~~~~~~~vR~~A 1358 (2256)
++.++.+-..++.--|.++ .++.-++..+..+...||+.+..||+.+..... +...+++..++..|........-+.-
T Consensus 154 lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~ 233 (1233)
T KOG1824|consen 154 LDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTY 233 (1233)
T ss_pred HHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 6666655444443333343 455566667888888999999999998887664 34577888888888877767777788
Q ss_pred HHHHHHHHhhhCcccchh-hcHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcC-CC--
Q 000098 1359 AFGLAGVVKGFGISSLKK-YGIAATLREGLA--DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQ-- 1432 (2256)
Q Consensus 1359 a~~L~~lv~~~g~~~~~~-~~il~~L~~~l~--~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~-D~-- 1432 (2256)
.++|+.+.+..|...... ..++|.+.+... +.++.+-||..+.+++.+...+++.+.||+..++..+++.+. |+
T Consensus 234 Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy 313 (1233)
T KOG1824|consen 234 IQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNY 313 (1233)
T ss_pred HHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCC
Confidence 899999999887432221 268888888762 234678999999999999999999999999999999888762 11
Q ss_pred -------------------------------cHHHHHHHHHHHHHHHhhhhH---hhHHhHHHHHHHhccCCChhHHHHH
Q 000098 1433 -------------------------------VVAVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRTKQSS 1478 (2256)
Q Consensus 1433 -------------------------------~~~VR~aa~~al~~l~~~l~~---~~v~~ilp~Ll~~L~~~~w~~R~~a 1478 (2256)
+..||.+|+.++..+...-.. .-...+=|.++..+.+..-.+|.-.
T Consensus 314 ~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 314 NYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHH
Confidence 237999999999887643221 1113444566666665555555555
Q ss_pred HHHHHHHHhhC------------------h---hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc---hh
Q 000098 1479 VQLLGAMAYCA------------------P---QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE 1534 (2256)
Q Consensus 1479 ~~~Lg~la~~~------------------p---~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~ 1534 (2256)
+.++-++.... | ..++...+.|+..+-..+++....-|..+..-|..+..+.+. +.
T Consensus 394 f~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~ 473 (1233)
T KOG1824|consen 394 FHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQH 473 (1233)
T ss_pred HHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhc
Confidence 54444443321 1 124455667777777777765555677777777777776654 45
Q ss_pred HHhHHHHHHhhhCCCChhH--H-HHHHHHHh--cccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000098 1535 IASLVPTLLMGLTDPNDHT--K-YSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~v--r-~al~~L~~--~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~ 1609 (2256)
+..++|.+...+.|.+... + .++.-+.. .......-.|.++.+.|.+.....++-+.+-..|......+++.+..
T Consensus 474 ~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 474 IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcc
Confidence 6788999999998876422 1 33333322 22333344567778889999999998888888887777888876532
Q ss_pred --C---CcchhhhhhhhHHHHHhhc--CCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHH
Q 000098 1610 --P---KDMIPYIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAA 1679 (2256)
Q Consensus 1610 --~---~~l~~~l~~Ll~~L~~~L~--d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa 1679 (2256)
+ .+..||...+.....+.+. |.+.+||+.|+.|+|.+...+|+. ..+.++|.+++.|+++. .|..++
T Consensus 554 l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi---TRl~Av 630 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI---TRLTAV 630 (1233)
T ss_pred cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh---HHHHHH
Confidence 2 3566788777776666654 788999999999999999999843 56788999999998743 688888
Q ss_pred HHHHHHHHHh---c-HhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcCCCCHHHH
Q 000098 1680 QGLSEVLAAL---G-TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVR 1754 (2256)
Q Consensus 1680 ~~L~~i~~~~---g-~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~d~~~~VR 1754 (2256)
.++..+...- . ...+..+++.+...++......|.+.+.++..+....+..+..++ +.++..+..++.+.+-.+-
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 8888776432 1 224567788888888777888899999999999988888776554 4566666666666655566
Q ss_pred HHHHHHHHHHHHHhhcc---chhchHHHHHhhcCCCCHHH-HHHHH-HHHHHHHHhhcCCCccc-------cccCCCCCC
Q 000098 1755 DAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRI-RQSSV-ELLGDLLFKVAGTSGKA-------LLEGGSDDE 1822 (2256)
Q Consensus 1755 ~~Al~al~~iv~~~~~~---~~~~llp~L~~~l~d~~~~i-R~~sv-~llg~ll~~~~g~~~~~-------~~~~~~ed~ 1822 (2256)
..|...+..+...+... .-..+++.+...+.++--.- -.+++ ..+..+... +..... ......+..
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t--~~~~l~y~~l~s~lt~PV~~~~ 788 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT--KEPDLDYISLLSLLTAPVYEQV 788 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc--CCCCccHHHHHHHHcCCccccc
Confidence 66666666554433321 12346666666555432111 11111 111111110 000000 000000000
Q ss_pred Ccc-hHH-------HHHHHHHHhcchhhHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 000098 1823 GAS-TEA-------HGRAIIEVLGRDKRNEVLAALYMV-R-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2256)
Q Consensus 1823 ~~~-~e~-------~~~~l~~~Lg~e~~~~vl~~L~~~-~-~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~ 1892 (2256)
..+ ..+ +...+...-+++.. -+...+..- . ...+..+|--|+-.++.+..+.+.... +.+...+++
T Consensus 789 ~~~l~kqa~~siA~cvA~Lt~~~~~~s~-s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~---~e~~~~iie 864 (1233)
T KOG1824|consen 789 TDGLHKQAYYSIAKCVAALTCACPQKSK-SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQ---NELKDTIIE 864 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccch-hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcc---hhhHHHHHH
Confidence 000 111 11112222221111 112222221 1 233445677777778887766543322 334446788
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHH
Q 000098 1893 SLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2256)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~ 1972 (2256)
++++++++++.+|+.+||.+.-. -++..+|.+.+.+.. +|..+.-....+.+++.....+.+.++.+.+...+.+
T Consensus 865 af~sp~edvksAAs~ALGsl~vg----nl~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k 939 (1233)
T KOG1824|consen 865 AFNSPSEDVKSAASYALGSLAVG----NLPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFK 939 (1233)
T ss_pred HcCCChHHHHHHHHHHhhhhhcC----chHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 89999999999999999988642 345666666655532 4666667788999999888877788999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCc--hHHHHHHHHHHHhhhcccchhhhhh------hh
Q 000098 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILP------KL 2044 (2256)
Q Consensus 1973 ~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~~lp~li~------~L 2044 (2256)
......+..|.-.++++|.++-. .-+.++|.|-..+.++.. ....+.+++-.+....+.+-|.+-+ ++
T Consensus 940 ~cE~~eegtR~vvAECLGkL~l~----epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~ 1015 (1233)
T KOG1824|consen 940 HCECAEEGTRNVVAECLGKLVLI----EPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKL 1015 (1233)
T ss_pred hcccchhhhHHHHHHHhhhHHhC----ChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHH
Confidence 88888888899999999999752 234578888887777543 2233333333333332333332221 22
Q ss_pred hcCchhhhHHHHHHHHHHHhCC---CccccHhhHHHHHHHhh------------------CCCCHHHHHHHHHHHHHHHh
Q 000098 2045 VHLPLSAFNAHALGALAEVAGP---GLNFHLGTILPALLSAM------------------GDDDMDVQSLAKEAAETVTL 2103 (2256)
Q Consensus 2045 ~~~p~~~~~~~aL~~La~~~g~---~l~~~l~~Ilp~Ll~~l------------------~~~~~~vr~~a~~al~~l~~ 2103 (2256)
+..|--.++-.|+..+..+++. -+...++.++|.+.+.- -|+.-++|..|.+|+-+++.
T Consensus 1016 ~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1016 LRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred HhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHH
Confidence 2333333444566666555542 23345677777776531 12335789999999999999
Q ss_pred hc-chhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcC------------CCChHHH
Q 000098 2104 VI-DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS------------DSDSTTV 2170 (2256)
Q Consensus 2104 ~~-~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~------------D~d~~Vr 2170 (2256)
++ +.-.+..|+..+..+++|. ..++....-.+..++..++..+...+..++.+|-..+. |...+..
T Consensus 1096 scld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLk 1174 (1233)
T KOG1824|consen 1096 SCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELK 1174 (1233)
T ss_pred hhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHH
Confidence 87 5577889999999999987 88999999999999999999999999999999987764 3345788
Q ss_pred HHHHHHHHHhh
Q 000098 2171 AAAWEALSRVV 2181 (2256)
Q Consensus 2171 ~~A~~aL~~l~ 2181 (2256)
+.|..++..+.
T Consensus 1175 RSAlRav~~L~ 1185 (1233)
T KOG1824|consen 1175 RSALRAVAALL 1185 (1233)
T ss_pred HHHHHHHHHHh
Confidence 99999999984
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-22 Score=248.84 Aligned_cols=750 Identities=17% Similarity=0.208 Sum_probs=519.0
Q ss_pred CCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhC
Q 000098 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389 (2256)
Q Consensus 1311 ~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~ 1389 (2256)
+|++.++..+-+-|..+ ..++++.++..|-+.|.++. ....|..|+..|..-+..
T Consensus 12 SpD~n~~~~Ae~~l~~~---~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~a--------------------- 67 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQA---QSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTA--------------------- 67 (859)
T ss_pred CCCcchHHHHHHHHHHH---HhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhcc---------------------
Confidence 56767776554433332 24567777777777777665 355677666555432221
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh-hhHhhHHhHHHHHHHhc
Q 000098 1390 RNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LSAQGVKLVLPSLLKGL 1467 (2256)
Q Consensus 1390 ~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~-l~~~~v~~ilp~Ll~~L 1467 (2256)
++++.......-|-. +.+-. .++-..++..++.+++..+..|.+++..++.. ++...++.+++.+...+
T Consensus 68 -kd~~~k~~~~qRWl~--------l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv 138 (859)
T KOG1241|consen 68 -KDPERKQQYQQRWLQ--------LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV 138 (859)
T ss_pred -CCHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc
Confidence 233333222221111 11111 23445567788989999999999999998764 66666789999999999
Q ss_pred cCCCh-hHHHHHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhcCc----h-hHHhH
Q 000098 1468 EDKAW-RTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLT--DTHPKVQSAGQTALQQVGSVIKN----P-EIASL 1538 (2256)
Q Consensus 1468 ~~~~w-~~R~~a~~~Lg~la~~~-p~~l~~~L~~Ivp~L~~~L~--D~~~~VR~aA~~aL~~l~~~i~~----~-~i~~l 1538 (2256)
.+... ..|.++++++|.+++.. |+.+......++-.++.+.. .++..||.+|..||..-.+..++ . +...+
T Consensus 139 ~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i 218 (859)
T KOG1241|consen 139 GEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYI 218 (859)
T ss_pred ccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhcee
Confidence 86554 49999999999999885 67777788889888888875 56788999999999877665542 1 33556
Q ss_pred HHHHHhhhCCCChhHH-HHHHHHHhc--ccccCCChhhH-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC-----
Q 000098 1539 VPTLLMGLTDPNDHTK-YSLDILLQT--TFVNTVDAPSL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE----- 1609 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr-~al~~L~~~--~~~~~~~~~~l-~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~----- 1609 (2256)
+...+++.+.|+..++ .++..|.++ .+..+. .+++ .-+.++-...+++.+.++...+.+++.++|+---+
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m-~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFM-EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888887 355555541 111111 2232 23666777788889999999999999988862111
Q ss_pred CCcchhh------------hhhhhHHHHHhhc-------CCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCC
Q 000098 1610 PKDMIPY------------IGLLLPEVKKVLV-------DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670 (2256)
Q Consensus 1610 ~~~l~~~------------l~~Ll~~L~~~L~-------d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~ 1670 (2256)
.+....+ ++.++|.|.+.|. |.+|..-.+|..||..++...|++..+.++|++-+.+++ +
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~-p 376 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN-P 376 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC-c
Confidence 0111111 3468888888875 357999999999999999999999999999999989987 7
Q ss_pred CHHHHHHHHHHHHHHHHHhcHhH----HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhH--HHHHHHHHHHHHH
Q 000098 1671 SNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF--QNYLQQVLPAILD 1744 (2256)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~~g~~~----l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f--~~yl~~ilp~Ll~ 1744 (2256)
++..|..++.++|.+..+-.... ..+.+|.++..+.|+.-.||.++.++||.++....... ..|+..+++.++.
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 88899999999999988776653 36678889999999999999999999999988765422 3578889999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCc
Q 000098 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGA 1824 (2256)
Q Consensus 1745 ~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~ 1824 (2256)
++.|+ |.|-.+++.++..+++........ ....+ .
T Consensus 457 gL~De-Prva~N~CWAf~~Laea~~eA~~s------------------------------------------~~qt~-~- 491 (859)
T KOG1241|consen 457 GLNDE-PRVASNVCWAFISLAEAAYEAAVS------------------------------------------NGQTD-P- 491 (859)
T ss_pred HhhhC-chHHHHHHHHHHHHHHHHHHhccC------------------------------------------CCCCC-c-
Confidence 99986 667777888877776544321000 00000 0
Q ss_pred chHHHHHHHHHHhcchhhHHHHHHHHHH--hcC-CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-----
Q 000098 1825 STEAHGRAIIEVLGRDKRNEVLAALYMV--RSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS----- 1896 (2256)
Q Consensus 1825 ~~e~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D-~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~----- 1896 (2256)
. ..++..++..|... +.| ...+.|.+|.+++..++.+.+....+.+..+...+...+..
T Consensus 492 -~------------t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~ 558 (859)
T KOG1241|consen 492 -A------------TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQ 558 (859)
T ss_pred -c------------chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01334445555444 334 34568999999999999999988777776666655543321
Q ss_pred ----C----CHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHh
Q 000098 1897 ----S----SSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2256)
Q Consensus 1897 ----~----~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~ 1964 (2256)
. -.+++..-+.+|+.+.++++.+ +.+.++..+.+.++.+ +..+...+..+++.++...|+. +..|++
T Consensus 559 ~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~-F~kym~ 637 (859)
T KOG1241|consen 559 ILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKG-FAKYMP 637 (859)
T ss_pred hccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHh-HHHHHH
Confidence 1 1245566678899999999876 4566777777777663 3445667788888888888865 678999
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhch---hhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhh
Q 000098 1965 ELIPTIRTALC-DSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHI 2040 (2256)
Q Consensus 1965 ~li~~l~~~L~-D~~~~VR~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~l 2040 (2256)
.+.|.+...|. -.+..|..+|....|.+.+.++. .+.++++..|++.|.++... +.+-|
T Consensus 638 ~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~h---------------R~vKP-- 700 (859)
T KOG1241|consen 638 AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLH---------------RNVKP-- 700 (859)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccc---------------ccccc--
Confidence 99999999884 45567888888888888887765 34566777777777765421 12222
Q ss_pred hhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhh--C-CC--C------HHHHHHHHHHHHHHHhhcch--
Q 000098 2041 LPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM--G-DD--D------MDVQSLAKEAAETVTLVIDE-- 2107 (2256)
Q Consensus 2041 i~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l--~-~~--~------~~vr~~a~~al~~l~~~~~~-- 2107 (2256)
....+++-++-..|..|.+|+..++|.+...- . ++ + .++|+.+.++..-++..++.
T Consensus 701 -----------~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~ 769 (859)
T KOG1241|consen 701 -----------AILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHA 769 (859)
T ss_pred -----------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 24678888899999999999999999988765 2 11 1 46799999998888887642
Q ss_pred --hcHHHHHHHHHhhc----CCCC--hhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHH-HcCCCChHHHHHHHHH
Q 000098 2108 --EGVESLVSELLKGV----GDNQ--ASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIV-LLSDSDSTTVAAAWEA 2176 (2256)
Q Consensus 2108 --~~~~~ll~~Ll~~l----~~~~--~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~-~l~D~d~~Vr~~A~~a 2176 (2256)
..+.++++.+++.+ .+++ ...-.+|+..||.++...+.+..... ..++..++. .........++.|.||
T Consensus 770 ~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa 849 (859)
T KOG1241|consen 770 DVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWA 849 (859)
T ss_pred chhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 23444455444443 3443 45677888999999997775544422 245555554 4455666788888888
Q ss_pred HHHhhc
Q 000098 2177 LSRVVA 2182 (2256)
Q Consensus 2177 L~~l~~ 2182 (2256)
.-.+.+
T Consensus 850 ~e~ikr 855 (859)
T KOG1241|consen 850 TEEIKR 855 (859)
T ss_pred HHHHHH
Confidence 777654
No 12
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.5e-20 Score=226.41 Aligned_cols=678 Identities=17% Similarity=0.229 Sum_probs=460.1
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccC
Q 000098 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294 (2256)
Q Consensus 1216 l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~-~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~ 1294 (2256)
++..|+ -..+..+..|..++..+..-...+|.. .+++++|.+.+. . .+|.-|+..+..+..+-..++..
T Consensus 365 i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~-----t---LeDqerhllVkvidriLyklDdl 434 (1172)
T KOG0213|consen 365 IMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSP-----T---LEDQERHLLVKVIDRILYKLDDL 434 (1172)
T ss_pred HHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCc-----c---ccchhhhhHHHHHHHHHHhhccc
Confidence 555543 356778888888887666555556554 355666654321 1 12234666676666665555432
Q ss_pred -CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccc
Q 000098 1295 -DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2256)
Q Consensus 1295 -~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~ 1373 (2256)
.|+++.++--+-..|-+++...+...-+.+..+++..+ +...+..+=..+ ++.+.-||...+.+.+.++..+|..
T Consensus 435 vrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDi-dn~deYVRnttarafavvasalgip- 510 (1172)
T KOG0213|consen 435 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDI-DNKDEYVRNTTARAFAVVASALGIP- 510 (1172)
T ss_pred chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHHhCcH-
Confidence 35555544333334556665554433344444544332 222222222222 2335789999999999999999853
Q ss_pred chhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1374 ~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
.++|+|.....++++|..|+.++.+...|+..+|...-||+..++..+-.++.|.+..||..++.++..++....+
T Consensus 511 ----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 511 ----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP 586 (1172)
T ss_pred ----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999999999989999999999999999999999999999999999998888
Q ss_pred hhH---HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1454 QGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1454 ~~v---~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
+++ +.++.+|++++...--..-.+-+.++|.++.........++ .+++-.+..-+..++.+.++.....+.++|..
T Consensus 587 ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t 666 (1172)
T KOG0213|consen 587 YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCAT 666 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcc
Confidence 765 67888998888644333333345666666554333333333 35555666677888888888888888888876
Q ss_pred cCc-h-hH-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000098 1530 IKN-P-EI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2256)
Q Consensus 1530 i~~-~-~i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~ 1606 (2256)
-+- + ++ .+++|.++...-.. |.|++. + .. +.....-..+|.-
T Consensus 667 ~Gv~~~y~r~dilp~ff~~fw~r----rmA~dr----------------------------r--~y-kqlv~ttv~ia~K 711 (1172)
T KOG0213|consen 667 DGVEPAYIRFDILPEFFFSFWGR----RMALDR----------------------------R--NY-KQLVDTTVEIAAK 711 (1172)
T ss_pred cCCCHHHHhhhhhHHHHhhhhhh----hhhccc----------------------------c--ch-hhHHHHHHHHHHH
Confidence 542 2 33 45566555432110 001100 0 00 0111112223332
Q ss_pred cCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-----chHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 000098 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2256)
Q Consensus 1607 l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-----~~~~lip~Ll~~L~~~~~~~~R~~aa~~ 1681 (2256)
++. ..++..+..-+.|..+.-|...+.++..+...+|.. .-+.++..++..++.+.... .-...+
T Consensus 712 vG~--------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d--~vml~g 781 (1172)
T KOG0213|consen 712 VGS--------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED--SVMLLG 781 (1172)
T ss_pred hCc--------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch--hhhhhh
Confidence 232 124555556677888888999999998888877743 22346677777776543321 234578
Q ss_pred HHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000098 1682 LSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAA 1757 (2256)
Q Consensus 1682 L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~-f~~yl~~ilp~Ll~~L~d~~~~VR~~A 1757 (2256)
++.++..+|.. ++.++...++..++++.+.+|+.++.+++.++..+... =...+..+=-.+...+..+.++|--..
T Consensus 782 fg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsI 861 (1172)
T KOG0213|consen 782 FGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSI 861 (1172)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHH
Confidence 89999988863 78889999999999999999999999999988776432 012334444557888998999999889
Q ss_pred HHHHHHHHHHhhcc----chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHH
Q 000098 1758 LGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2256)
Q Consensus 1758 l~al~~iv~~~~~~----~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l 1833 (2256)
+.|+..|+...+-. .+..++|.|...+.+.+.++...++.++|.+..+-+ + .
T Consensus 862 LgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp------------E---~--------- 917 (1172)
T KOG0213|consen 862 LGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP------------E---Y--------- 917 (1172)
T ss_pred HHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc------------c---c---------
Confidence 99999998877643 355689999999999999999999999999863210 0 0
Q ss_pred HHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELV 1913 (2256)
Q Consensus 1834 ~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv 1913 (2256)
.+...+-++--.|...+......+|.+|...|+.++...++ .+++..|++.+ ...+-..|....-+++-+.
T Consensus 918 ---v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP--qdVLatLlnnL----kvqeRq~RvcTtvaIaIVa 988 (1172)
T KOG0213|consen 918 ---VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP--QDVLATLLNNL----KVQERQNRVCTTVAIAIVA 988 (1172)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH--HHHHHHHHhcc----hHHHHHhchhhhhhhhhhh
Confidence 01111122333344445556678999999999999887665 25566665554 4445555666666777777
Q ss_pred HhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1914 RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1914 ~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
+.+|.- .++|.|..-...++.++++|+..+++.+.+..|. +-.+|+-.+.|.+..++.|.|..-|+.|..++..+.
T Consensus 989 E~c~pF---tVLPalmneYrtPe~nVQnGVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 989 ETCGPF---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred hhcCch---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 766653 4677788777888899999999999988887764 356799999999999999999999988876665554
No 13
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1.9e-21 Score=234.18 Aligned_cols=717 Identities=15% Similarity=0.214 Sum_probs=496.1
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhHhh-HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~~~-v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~ 1506 (2256)
..++..+..|..+..-+..=...++... +.+++|.+++.--+ -+.|+--+..+..+.+...+...++...|+=.+-.
T Consensus 371 kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLe--DqerhllVkvidriLyklDdlvrpYVhkILvViep 448 (1172)
T KOG0213|consen 371 KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLE--DQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEP 448 (1172)
T ss_pred hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCcccc--chhhhhHHHHHHHHHHhhcccchhceeeeEEEeec
Confidence 4567788888887766665555554433 36777776654322 24577778888888888877777777777666667
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH----HHHHHhcccccCCChhhHhhHHHHHH
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS----LDILLQTTFVNTVDAPSLALLVPIVH 1582 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a----l~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2256)
++-|++...|....+.+.++++..+ +..++..+-.-+.+.++++|+. ....+. .-.++.++|.+.
T Consensus 449 llided~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafavvas--------algip~llpfLk 517 (1172)
T KOG0213|consen 449 LLIDEDYYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAVVAS--------ALGIPALLPFLK 517 (1172)
T ss_pred ceecchHHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHHHHH--------HhCcHHHHHHHH
Confidence 8889999999999888888887654 3344444444455566778742 222221 112445778888
Q ss_pred HhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc---CchHHH
Q 000098 1583 RGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPDL 1658 (2256)
Q Consensus 1583 ~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~---~~~~~l 1658 (2256)
...+++ +|.-|..+..++..+|.+.+. .+.||+..++..+...+.|.+..||..++.+++.++++.++ +.|+.+
T Consensus 518 avc~SkkSwqaRhTgIkivqqIail~Gc--svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsV 595 (1172)
T KOG0213|consen 518 AVCGSKKSWQARHTGIKIVQQIAILSGC--SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSV 595 (1172)
T ss_pred HHhccccchhhhchhhHHHHHHHHHhcc--hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHH
Confidence 877776 999999999999999987653 57799999999999999999999999999999999998765 468888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH
Q 000098 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2256)
Q Consensus 1659 ip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y 1734 (2256)
+..|.+.+.++... .-..-..+++-++.-...+ +-.++|-.++.-..+++.+.|...+..+..+|..-|-+-.--
T Consensus 596 lkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~ 674 (1172)
T KOG0213|consen 596 LKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYI 674 (1172)
T ss_pred HHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHH
Confidence 88898888774432 2333334555555444444 336778888888999999999999999999998888653222
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH---------HHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1735 LQQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1735 l~~ilp~Ll~~L~d~~~~VR~~Al---------~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
-.+++|.++...- .|..|. ..-..|....| ...++..+...+.|++..-|...++++..+...
T Consensus 675 r~dilp~ff~~fw-----~rrmA~drr~ykqlv~ttv~ia~KvG---~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~ 746 (1172)
T KOG0213|consen 675 RFDILPEFFFSFW-----GRRMALDRRNYKQLVDTTVEIAAKVG---SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGR 746 (1172)
T ss_pred hhhhhHHHHhhhh-----hhhhhccccchhhHHHHHHHHHHHhC---chHHHHHHhhhhccccHHHHHHHHHHHHHHHhc
Confidence 2467888876543 233332 11122333333 234555566666788887787777777665422
Q ss_pred hcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 000098 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2256)
Q Consensus 1806 ~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~ 1885 (2256)
.+.. +-+ ..+ ..+.+..++..+........ ..+..|+.++...+...++|+|.
T Consensus 747 ----lg~~------did--------erl--------eE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpq 799 (1172)
T KOG0213|consen 747 ----LGAA------DID--------ERL--------EERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQ 799 (1172)
T ss_pred ----cccc------ccc--------HHH--------HHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHH
Confidence 1110 000 000 11233444443322222111 34456777777778888999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh---Ccc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHh
Q 000098 1886 LMNTLISSLASSSSERRQVAGRALGELVRKL---GER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2256)
Q Consensus 1886 Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~---~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~ 1961 (2256)
+...++..|++.++.+|+.|+..++.++..+ ++. .+..+=-.|.+.+.+..|.+--.+..++..|....|-..+.|
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999999999887654 433 455555567788888889998888888988888888777777
Q ss_pred hHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhH-----HhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccc
Q 000098 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAV 2036 (2256)
Q Consensus 1962 ~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~-----~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~ 2036 (2256)
-...++|.+...|.+.++.|.++....++.++.. |++++ -.+.-.|++.|.... +
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~Iadr-gpE~v~aREWMRIcfeLlelLkahk----------K--------- 939 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-GPEYVSAREWMRICFELLELLKAHK----------K--------- 939 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHHHHHHH----------H---------
Confidence 7888999999999999999999999989988874 33322 122222333222211 0
Q ss_pred hhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHH
Q 000098 2037 LPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSE 2116 (2256)
Q Consensus 2037 lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~ 2116 (2256)
.+.......++++++..|+ +.++..|++.|...+-..|-...-+++-+.+.+ +.=.++|.
T Consensus 940 -----------~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c---~pFtVLPa 999 (1172)
T KOG0213|consen 940 -----------EIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETC---GPFTVLPA 999 (1172)
T ss_pred -----------HHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc---CchhhhHH
Confidence 1112345688999999998 678888888886555444443333444444333 45578899
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC----Cchhch
Q 000098 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK----EVQPSY 2192 (2256)
Q Consensus 2117 Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~----e~l~~l 2192 (2256)
|+.-.+-++..+.++.+.++..||+..+..-.+|+..+.+-|...|-|+|..-|+.|..++..+....+. |.+..+
T Consensus 1000 lmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHL 1079 (1172)
T KOG0213|consen 1000 LMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHL 1079 (1172)
T ss_pred HHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHH
Confidence 9999999999999999999999999999888999999999999999999999999999999988765442 222222
Q ss_pred HHHHH--------HHHhhhhhhhhhhccCCccccCCcCCCCcchhhHHHHHHHhhccCCCCC
Q 000098 2193 IKVIR--------DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQVFVLYTFSPS 2246 (2256)
Q Consensus 2193 v~~l~--------~~l~~~~d~~r~~~~g~~~~l~g~~lp~~i~~~Lp~~~~~l~~~~~~~~ 2246 (2256)
+..+- ..++... + .+.||..--|..+++-..+|||++.+...|
T Consensus 1080 LN~iWpNIle~sPhviqa~~--------e---~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR 1130 (1172)
T KOG0213|consen 1080 LNLIWPNILETSPHVIQAFD--------E---AMEGLRVALGPQAMLKYCLQGLFHPARKVR 1130 (1172)
T ss_pred HHHhhhhhcCCChHHHHHHH--------H---HHHHHHHHhchHHHHHHHHHhccCcHHHHH
Confidence 22111 1111111 1 245565556888999999999998876655
No 14
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1.2e-17 Score=217.84 Aligned_cols=602 Identities=17% Similarity=0.278 Sum_probs=414.6
Q ss_pred hhhhHHHHHHHHHHhhhccCC---cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC--chHHHHHHHHHHHhcC
Q 000098 1275 LVREGVVIFTGALAKHLAKDD---PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--EAPTLVSRLLDQLMKS 1349 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~l~~~~---~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~~~~~l~~Ll~~L~~~ 1349 (2256)
+.|++.+.+|-.+.+++.... -..+++...+...|.+.++.+|..+++.++ +++.+++ .-..++..|+.+|..+
T Consensus 833 h~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlg-lVYelgd~~~k~~LV~sL~~tl~~G 911 (1702)
T KOG0915|consen 833 HERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLG-LVYELGDSSLKKSLVDSLVNTLTGG 911 (1702)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCce-EEEecCCchhHHHHHHHHHHHHhcc
Confidence 789999999999988876431 234667788888999999999998888765 4555543 3467888888888754
Q ss_pred CCHH---------------------HHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000098 1350 DKYG---------------------ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408 (2256)
Q Consensus 1350 ~~~~---------------------vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~ 1408 (2256)
+... -.....+-|..++..+| +++++-..++...++..|..|.||.++|+.|++
T Consensus 912 kr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-----qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~ 986 (1702)
T KOG0915|consen 912 KRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-----QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK 986 (1702)
T ss_pred ccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-----ChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence 3110 01233445555665555 234444555566666689999999999999999
Q ss_pred HhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh---hhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000098 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ---LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 1485 (2256)
Q Consensus 1409 ~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~---l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~l 1485 (2256)
..+..++||+.+++|.+...--|++..|+.+.....+.+... ..+....+|+..++..+.+..||+|.++|.+|..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988777777543 22344578899999999999999999999999999
Q ss_pred HhhChh-hHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc
Q 000098 1486 AYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2256)
Q Consensus 1486 a~~~p~-~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2256)
..+.|. ++...+|+++..++..+.|-+..||.+|-.+...+++.+ -.+.|+...+.
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~-------------vr~~d~~~~~~---------- 1123 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC-------------VRICDVTNGAK---------- 1123 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhcccCCccc----------
Confidence 998764 578899999999999999999999999998888777643 12333322110
Q ss_pred cccCCChhhHhhHHHHHH-HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHH-HHHH
Q 000098 1565 FVNTVDAPSLALLVPIVH-RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV-AARA 1642 (2256)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~-~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~-a~~a 1642 (2256)
....++.++|.+. ++..+.-+++|+.+...+..+.+ ..++.+.||.+.++|.|......-.+.|-.. +.++
T Consensus 1124 -----~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~K--ssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1124 -----GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAK--SSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred -----HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH--hchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 1123445666654 35556778999999999988888 3557899999999999999988766665332 2222
Q ss_pred HHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCC-CHHHHHHHHHHHH
Q 000098 1643 IGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFK 1721 (2256)
Q Consensus 1643 L~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~-~~~vR~~al~~l~ 1721 (2256)
.+. + .+.+..+...... . .-..+++...+...+...+.++.|.+.+.++.. .-..|.++...+.
T Consensus 1197 ~~~-------e--~ealDt~R~s~ak-s-----spmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~ 1261 (1702)
T KOG0915|consen 1197 INI-------E--TEALDTLRASAAK-S-----SPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFIS 1261 (1702)
T ss_pred hhh-------H--HHHHHHHHHhhhc-C-----CcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Confidence 111 0 1122222111111 0 112355777777778888999999999988765 6677889999999
Q ss_pred HhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000098 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2256)
Q Consensus 1722 ~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ 1801 (2256)
.+...+|.+..||...++..++.++.|.++.+|.+-..|++.++..-.++....++..+......+....+..++..+-+
T Consensus 1262 ~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~ 1341 (1702)
T KOG0915|consen 1262 LLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN 1341 (1702)
T ss_pred HHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH
Confidence 99999999999999999999999999999999999888988887655544333344333322211111111122222222
Q ss_pred HHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHH
Q 000098 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2256)
Q Consensus 1802 ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~ 1881 (2256)
+... ..+.| ...-..+++.++..+.+.......-=-.+|..+++....+++-
T Consensus 1342 Ian~---------------------------s~e~L-kn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl 1393 (1702)
T KOG0915|consen 1342 IANY---------------------------SQEML-KNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRL 1393 (1702)
T ss_pred HHHh---------------------------hHHHH-HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhh
Confidence 2110 01111 1122346666666655543333333346788888777677766
Q ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhCc----cchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC
Q 000098 1882 IMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1955 (2256)
Q Consensus 1882 ~l~~Ll~~L~~~L-~~~~~~~R~~A~~aL~~lv~~~~~----~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~ 1955 (2256)
+.+.++..+.... ++..+..|..++.++..++..... ++.-.+.+.+.+.+.....+.++....++......++
T Consensus 1394 ~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~ 1472 (1702)
T KOG0915|consen 1394 YLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGL 1472 (1702)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhH
Confidence 7777666665444 455589999999999888875433 3455666777777766666666666666665555544
No 15
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.3e-20 Score=230.97 Aligned_cols=513 Identities=22% Similarity=0.321 Sum_probs=372.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCC
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~ 1588 (2256)
.|+++.||.....+.......-+......+.|..-+.++...
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-------------------------------------- 68 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-------------------------------------- 68 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--------------------------------------
Confidence 788888888877777666554444444444444444433211
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc
Q 000098 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1589 ~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~ 1668 (2256)
+..+|.......+.++... ...+ +-...++..+...+..|.+.+|.+...|+..+........-..+.+.+.+.+.
T Consensus 69 ~~~~~~~~~v~~~~~a~~~-~~~d--~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~- 144 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHL-QIVD--PRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT- 144 (569)
T ss_pred hHHHhhhhHHHHHHHHHhc-cccC--cchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-
Confidence 2234444444445555432 2122 33345788888889999999999999999999877655445567777777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcHhHH--HHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHh
Q 000098 1669 DNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2256)
Q Consensus 1669 ~~~~~~R~~aa~~L~~i~~~~g~~~l--~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~ 1745 (2256)
......|.+++.+++.+..+.|...+ ..++..+.....+.+ ...|+.+..++......+|..|+||+-.++|.++..
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 46677899999999999999887755 457777877777764 455667888999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcc
Q 000098 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2256)
Q Consensus 1746 L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~ 1825 (2256)
+.|..+.||.+|..+.+.++..+...++..++|.+...+.+..|+....+++++|.+.++.+
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap------------------ 286 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP------------------ 286 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch------------------
Confidence 99999999999999999999999988999999999999988899999999999998865421
Q ss_pred hHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 000098 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQV 1904 (2256)
Q Consensus 1826 ~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~~~~~~~R~~ 1904 (2256)
..+.. ...++++.+...+.|+...||.++..++..+..... ..+.+++|.+++.+ ++++..+. .
T Consensus 287 -----~qLs~-----~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l----~dp~~~~~-e 351 (569)
T KOG1242|consen 287 -----KQLSL-----CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL----ADPSCYTP-E 351 (569)
T ss_pred -----HHHHH-----HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----cCcccchH-H
Confidence 11111 234677777788999999999999999887765432 34666666666554 66652221 1
Q ss_pred HHHHHH--HHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhh-ChhhhHhhHhhHHHHHHHHhcCCCHHH
Q 000098 1905 AGRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEV 1981 (2256)
Q Consensus 1905 A~~aL~--~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~-~~~~l~~~l~~li~~l~~~L~D~~~~V 1981 (2256)
+...|+ .++..+.+..+.-++|.+.+++.+.+...+..++..++.+..-. .+..+.+|++.++|.+...+.|..|+|
T Consensus 352 ~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 352 CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 222222 22334445568889999999999888888888887777777666 567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCc---hHHHHHHHHHHHhhhcccchhhhhhhhhcC----c----hh
Q 000098 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHL----P----LS 2050 (2256)
Q Consensus 1982 R~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~---~~~al~~L~~il~~~~~~~lp~li~~L~~~----p----~~ 2050 (2256)
|..|+.+++.+.+..|...+++.+|.+.+.+.++.. ...+.+++.++++.-....+-.++|.+... - +.
T Consensus 432 R~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~ 511 (569)
T KOG1242|consen 432 RAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIR 511 (569)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhc
Confidence 999999999999999999999999999999876543 235566677776543222222223322211 1 11
Q ss_pred hhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHH
Q 000098 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKE 2096 (2256)
Q Consensus 2051 ~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~ 2096 (2256)
......+..+....|..+.+|+..+++.+.+.+.+.++..|..+.+
T Consensus 512 dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 512 DGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALE 557 (569)
T ss_pred cCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhh
Confidence 1112234445556678888899999999988888777666655443
No 16
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1.8e-17 Score=216.08 Aligned_cols=530 Identities=17% Similarity=0.236 Sum_probs=360.0
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC
Q 000098 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
...+...+.+++.+.++..|+++|.++-.+...++..+...-..+.+...+..++.|.+.-++..|.+.+|-+.+--+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 44566778888999999999999999888887777666777788889999999999999999999999999877644444
Q ss_pred chHHHHHHHHHHhhcCCCH--------HH-------------HHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCC-CHH
Q 000098 1654 NFPDLVSWLLDALKSDNSN--------VE-------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS 1711 (2256)
Q Consensus 1654 ~~~~lip~Ll~~L~~~~~~--------~~-------------R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~-~~~ 1711 (2256)
.-..++..|+++|...+.. ++ ....-+-+..++..+|. +.++-.+++..++. .|.
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q---PdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ---PDLVYKFMQLANHNATWN 972 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC---hHHHHHHHHHhhhhchhh
Confidence 4567888888888752111 00 00111223334444443 35666777877765 899
Q ss_pred HHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---hhccchhchHHHHHhhcCCCC
Q 000098 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDN 1788 (2256)
Q Consensus 1712 vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~---~~~~~~~~llp~L~~~l~d~~ 1788 (2256)
.|.++...|+.++...|+..+||+.+++|.+...--||+..|+.+....+..++.. .-++++..++.+|..++.+..
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999877777766532 223345668889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000098 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868 (2256)
Q Consensus 1789 ~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l 1868 (2256)
||+|.+++-++.+++.. . + .+ .+.+ ...+++..+++.+.|....||++|-.+.
T Consensus 1053 wRVReasclAL~dLl~g---~-----------~----~~----~~~e-----~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQG---R-----------P----FD----QVKE-----KLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred HHHHHHHHHHHHHHHcC---C-----------C----hH----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999732 0 0 11 1122 2247888899999999999999988776
Q ss_pred HHHHhcC--------hhHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCC
Q 000098 1869 KTIVANT--------PKTLKEIMPVLMNTLIS-SLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPS 1936 (2256)
Q Consensus 1869 ~~l~~~~--------~~~l~~~l~~Ll~~L~~-~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~ 1936 (2256)
..+..-+ +..-++++..++|.+.. ...+.-.++|..+..++-++++..|.. +.++++|.+.+.+..-.
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELE 1185 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccc
Confidence 6654422 12233444444444431 122444566666666666666655543 45566665555443322
Q ss_pred hhhHH-hHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccC
Q 000098 1937 ASRRQ-GVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2256)
Q Consensus 1937 ~~vR~-~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2256)
+.+-. -+|.... .....+...+....-..|. .++++.+..+.....+++++|.+.+.++..
T Consensus 1186 ~~vLnYls~r~~~-------------~e~ealDt~R~s~aksspm-----meTi~~ci~~iD~~vLeelip~l~el~R~s 1247 (1702)
T KOG0915|consen 1186 PQVLNYLSLRLIN-------------IETEALDTLRASAAKSSPM-----METINKCINYIDISVLEELIPRLTELVRGS 1247 (1702)
T ss_pred hHHHHHHHHhhhh-------------hHHHHHHHHHHhhhcCCcH-----HHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 22211 1111100 0011122221111111111 123444444444555556666665555443
Q ss_pred CchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHH
Q 000098 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK 2095 (2256)
Q Consensus 2016 ~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~ 2095 (2256)
-. .+.+...+..+..|+.-.|..+.||...++.+++..+.+.++.+|....
T Consensus 1248 Vg-----------------------------l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafA 1298 (1702)
T KOG0915|consen 1248 VG-----------------------------LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFA 1298 (1702)
T ss_pred CC-----------------------------CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHH
Confidence 11 1112245666777788899999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCC---ChHHHHH
Q 000098 2096 EAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS---DSTTVAA 2172 (2256)
Q Consensus 2096 ~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~---d~~Vr~~ 2172 (2256)
.|++.++....++.+..++..++..+-.+....+..++..+-.+..+...-+..|...++|..+-.+.+. +.+.++-
T Consensus 1299 sAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~d 1378 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWND 1378 (1702)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999987777788888877777644444444677777777777777788899999999888766544 4567888
Q ss_pred HHHHHHHh
Q 000098 2173 AWEALSRV 2180 (2256)
Q Consensus 2173 A~~aL~~l 2180 (2256)
.|..+...
T Consensus 1379 vW~e~vsg 1386 (1702)
T KOG0915|consen 1379 VWAELVSG 1386 (1702)
T ss_pred HHHHhCCC
Confidence 88776543
No 17
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.88 E-value=9.2e-19 Score=207.65 Aligned_cols=667 Identities=15% Similarity=0.155 Sum_probs=426.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccC-CcchHHHH
Q 000098 1225 LADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV 1302 (2256)
Q Consensus 1225 l~D~~~~VR~~a~~a~~~~i~~~g~~-~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~-~~~i~~il 1302 (2256)
..+.+...|..++.....-...+|+. .++.++|++.+.- .+|.-|+..+..+..+-..++.. .|+++.++
T Consensus 177 vKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~--------LeDqerhl~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 177 VKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRE--------LEDQERHLVVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred cccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--------hhhhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence 45566667777665544433344443 3567777764430 12234666777776666555432 35555443
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHH
Q 000098 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~ 1382 (2256)
--.-..+-+++..++...-+.+..+++..+-. ..+..+=..+ .+.+.-+|...+.+.+.+++.+|.. .++|+
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpDi-~~~deYVRnvt~ra~~vva~algv~-----~llpf 320 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPDI-TSKDEYVRNVTGRAVGVVADALGVE-----ELLPF 320 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCCc-ccccHHHHHHHHHHHHHHHHhhCcH-----HHHHH
Confidence 33333445666665543333444444443211 1111111112 3345789999999999999999853 67889
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH---HhH
Q 000098 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLV 1459 (2256)
Q Consensus 1383 L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v---~~i 1459 (2256)
+.....+.++|+.|+.++.+...||..+|...-+|+..++..+-.++.|....||..++.++..++....++++ +.+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 99888888899999999999999999999988999999999999999999999999999999999998888765 677
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhh-ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hh--
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PE-- 1534 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~-~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~-- 1534 (2256)
+.+++++....--.+-.+-+.+.|.+... .|+.....-.+....+...++.++.+........... |...+. |+
T Consensus 401 l~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~-C~~v~~~tp~~l 479 (975)
T COG5181 401 LCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERI-CDKVGTDTPWKL 479 (975)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHH-HhccCCCCHHHH
Confidence 88888877643222222233444443332 2333333334555555566665555544433322222 222211 21
Q ss_pred HHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcc
Q 000098 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDM 1613 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l 1613 (2256)
..++.|.+....-. -|.| .|+ +... ....-..+++..++
T Consensus 480 r~~v~pefF~~fw~----rr~A-----------------------------~dr~~~k~---v~~ttvilAk~~g~---- 519 (975)
T COG5181 480 RDQVSPEFFSPFWR----RRSA-----------------------------GDRRSYKQ---VVLTTVILAKMGGD---- 519 (975)
T ss_pred HHhhcHHhhchHHH----hhhc-----------------------------ccccccce---eehhHHHHHHHcCC----
Confidence 13333333221100 0000 000 0000 00111122332233
Q ss_pred hhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH--
Q 000098 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVL-- 1686 (2256)
Q Consensus 1614 ~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~-- 1686 (2256)
+.+...+.+.+.|+...-|..++.+...+...+|.. .-..++..++..++.+.... .-...+++.+.
T Consensus 520 ----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~--~~il~~f~tv~vs 593 (975)
T COG5181 520 ----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV--GLILPCFSTVLVS 593 (975)
T ss_pred ----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc--cEEEecccceeee
Confidence 235667777788888888888888888887777633 12345566666666533221 11122334333
Q ss_pred -HHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh--hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1687 -AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1687 -~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~--~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
...|+.++..++..++..++++.+.+|..++...+.++..+.. ++ ..+..+=..+...+..+.++|--..+.|+..
T Consensus 594 l~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~ 672 (975)
T COG5181 594 LEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICS 672 (975)
T ss_pred hhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 2345668899999999999999999999999999988876542 11 3445555667888888889998888899888
Q ss_pred HHHHhhcc----chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcc
Q 000098 1764 LVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839 (2256)
Q Consensus 1764 iv~~~~~~----~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~ 1839 (2256)
|....+-+ .+..++|.+...+.+.+.++....+.++|.+....+. -.|.
T Consensus 673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe---------------------------yi~~ 725 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE---------------------------YIGV 725 (975)
T ss_pred HhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc---------------------------cCCH
Confidence 87766544 3556899999899999999999999999988632110 0111
Q ss_pred hhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc
Q 000098 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2256)
Q Consensus 1840 e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2256)
..+-++--.|...+...+.++|..|...|+.+....++ ++++..|++. |...+-..|....-+++-+.+.+|.-
T Consensus 726 rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP--qdvL~~Llnn----LkvqeRq~RvctsvaI~iVae~cgpf 799 (975)
T COG5181 726 REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP--QDVLDILLNN----LKVQERQQRVCTSVAISIVAEYCGPF 799 (975)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--HHHHHHHHhc----chHHHHHhhhhhhhhhhhhHhhcCch
Confidence 11223333344445566788999999999988876654 2445555444 45556667777777888888877763
Q ss_pred chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000098 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2256)
Q Consensus 1920 ~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l 1992 (2256)
.++|.|..-...++.++++|+..+++.+.+..|.. -.+|.-.+.|.+..++.|.|+.-|+.|...+..+
T Consensus 800 ---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 800 ---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred ---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 46777877777888999999999999888887754 4578999999999999999999998876544444
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=1.1e-15 Score=213.65 Aligned_cols=644 Identities=15% Similarity=0.116 Sum_probs=407.5
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCC-Cc-H------HHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHh
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYP-DS-I------QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSA 1204 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~-~~-~------~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l 1204 (2256)
+.|++.|.+.+...|+.++.+|..+..... |. . ...++.|....... ....--.+..+..+|.++
T Consensus 102 ppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g-------sk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 102 PPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG-------NKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC-------chhhHHHHHHHHHHHHHH
Confidence 567788888889999999999998875421 11 0 12334444432110 001112344556788888
Q ss_pred hhhhccCC---h-hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhc--ccc--ccchHHHHHHHhhccCCChhhhhhh
Q 000098 1205 ADVLRTKD---L-PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RDN--VSLLFPIFENYLNKKASDEEKYDLV 1276 (2256)
Q Consensus 1205 ~~~~~~~~---~-~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g--~~~--~~~Ll~~l~~~L~~~~~~~~~~~~v 1276 (2256)
+..-++.. . ...+..++ ..+.+.++.++..++.+...+....+ .+. -...+|.|-++|... . +..+
T Consensus 175 s~~~en~~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg-~----~~~V 248 (2102)
T PLN03200 175 CGSTDGFWSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG-N----EVSV 248 (2102)
T ss_pred hcCccchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC-C----ChHH
Confidence 76543311 0 12344443 46678889999888776554443221 111 134578888887541 1 1258
Q ss_pred hhHHHHHHHHHHhhhccCCcch--HHHHHHHHHHcCCCCHH---------HHHHHHHhhHHhHHhhcCchHHHHHHHHHH
Q 000098 1277 REGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ 1345 (2256)
Q Consensus 1277 r~~av~~L~~La~~l~~~~~~i--~~il~~Ll~~L~~~~~~---------Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~ 1345 (2256)
|+.++-.|+.|+.+-+.....+ ...++.|+..+..|+.+ .++.+.-+|..+.... ..+++.|-+.
T Consensus 249 RE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L~~l 324 (2102)
T PLN03200 249 RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYLGEL 324 (2102)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHHHHh
Confidence 8999999999997521100000 12356777777766643 3666667777665332 3445544444
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCccc-----chhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC-chHh--
Q 000098 1346 LMKSDKYGERRGAAFGLAGVVKGFGISS-----LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPY-- 1417 (2256)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~lv~~~g~~~-----~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~-~~py-- 1417 (2256)
+.+..+...--.+..+++.++....... +....+.+.|.+.+.+++..-..+.+..++..+ ++.. +...
T Consensus 325 l~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl---~gN~~l~~~L~ 401 (2102)
T PLN03200 325 SESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL---YGNAYLSRKLN 401 (2102)
T ss_pred hcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh---cCChHHHHHHH
Confidence 4333344433344455555544332111 111235567777777664333344444444222 2210 0011
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
-.+..+.++..+.-.+.+++..+.+++..+...-... .+ ...+|.+++.|.+.+...+..++..++.++...+++.
T Consensus 402 ~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 402 HAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred hccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 1235566777777778899999999998887542221 12 3468999999999888999999999999987665432
Q ss_pred hh-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-h-hH--HhHHHHHHhhhCCCChhHH-HHHHHHHhccccc
Q 000098 1494 SQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN 1567 (2256)
Q Consensus 1494 ~~-~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~-~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~ 1567 (2256)
.. .-...+|.|+++|..+++++|+.|+++|.+++..-.+ . .+ ...+|.|++.+.+.+...+ .++.+|.+.....
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence 21 1237899999999999999999999999999874211 1 23 2578889999988876665 4666665422211
Q ss_pred CCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hh--hhhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PY--IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~--l~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
+. ..++.+...+...++.++..+...++++.... +..+.. .. ...-++.|..++.+++..+++.|+.+|.
T Consensus 562 --d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~-~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLs 634 (2102)
T PLN03200 562 --DA----ATISQLTALLLGDLPESKVHVLDVLGHVLSVA-SLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLA 634 (2102)
T ss_pred --ch----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc-chhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 13355667788888899998999999887743 222211 10 2357899999999999999999999999
Q ss_pred HHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---H-H-HHHHHHHHHhccCCCHHHHHH
Q 000098 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-F-EHILPDIIRNCSHQRASVRDG 1715 (2256)
Q Consensus 1645 ~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~-l-~~ll~~ll~~l~~~~~~vR~~ 1715 (2256)
.++..-.+. .....+|.++..|.+ .+..++..++++|+.+......+ + . .+.+|.+++.+.+.+..+++.
T Consensus 635 nL~a~~~d~~~avv~agaIpPLV~LLss-~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~ 713 (2102)
T PLN03200 635 DIFSSRQDLCESLATDEIINPCIKLLTN-NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQ 713 (2102)
T ss_pred HHhcCChHHHHHHHHcCCHHHHHHHHhc-CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHH
Confidence 998632221 234578888898887 45558899999999988643322 1 1 457899999999999999999
Q ss_pred HHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc-h------hchHHHHHhhcCCCC
Q 000098 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDGIFNDN 1788 (2256)
Q Consensus 1716 al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~-~------~~llp~L~~~l~d~~ 1788 (2256)
++.++..++......-.-.-...++++...+.+.++.+|+.|..++..+...+..+. + .-.+..|.+.+...+
T Consensus 714 Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~ 793 (2102)
T PLN03200 714 AVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793 (2102)
T ss_pred HHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 999999988765332111224678999999999999999999999998887655332 1 124556666665555
Q ss_pred HHHHH--HHHHHHHHHHH
Q 000098 1789 WRIRQ--SSVELLGDLLF 1804 (2256)
Q Consensus 1789 ~~iR~--~sv~llg~ll~ 1804 (2256)
.+.-. .+++.+..+..
T Consensus 794 ~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 794 LDSSATSEALEALALLAR 811 (2102)
T ss_pred cchhhHHHHHHHHHHHHh
Confidence 44433 36666666653
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=1.7e-17 Score=231.29 Aligned_cols=793 Identities=15% Similarity=0.152 Sum_probs=504.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC--c--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-c----
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E--APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-I---- 1371 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~--~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g-~---- 1371 (2256)
.++.|+..|..++..+|..++.++..+...-.. . ....++.++..|... +...|..|+.+|..+..... +
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 468888889888888998777666655432110 0 134566777766544 68999999999999886531 1
Q ss_pred ccchhhcHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 000098 1372 SSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMM 1448 (2256)
Q Consensus 1372 ~~~~~~~il~~L~~~l~~~--~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~ 1448 (2256)
..+.....+|.|.+.+++. ++...++.+..++..++..-+......+ ...+|.+...+.++++.++..|..++..++
T Consensus 138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La 217 (2102)
T PLN03200 138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM 217 (2102)
T ss_pred hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1121246788888888764 2333455556777777754432212212 247899999999999999999998888777
Q ss_pred hhhhH--hhH--HhHHHHHHHhccC-CChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCH---------
Q 000098 1449 SQLSA--QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHP--------- 1513 (2256)
Q Consensus 1449 ~~l~~--~~v--~~ilp~Ll~~L~~-~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~--------- 1513 (2256)
...+. ..+ ...+|.+++.+.+ .+...|..|+.+|+.++.+.++.-.... ...+|.|++++..++.
T Consensus 218 ss~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~ 297 (2102)
T PLN03200 218 MAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQ 297 (2102)
T ss_pred cCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccch
Confidence 65432 222 3568999999975 5668999999999999987655422111 2567888888765443
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhH--HHHHHHHHhc-ccccCCChh--hH--hhHHHHHHHhhc
Q 000098 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT--KYSLDILLQT-TFVNTVDAP--SL--ALLVPIVHRGLR 1586 (2256)
Q Consensus 1514 ~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~v--r~al~~L~~~-~~~~~~~~~--~l--~~i~p~L~~~L~ 1586 (2256)
..++.|.|+|++++... ..++|.|.+.+..+.+.. ..++.++... ......+.. .+ ..+.+.+.+.++
T Consensus 298 ~Lqe~AvwALsNIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr 372 (2102)
T PLN03200 298 ALQENAMGALANICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLK 372 (2102)
T ss_pred HHHHHHHHHHHHHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhC
Confidence 45899999999999654 456666666665443222 1122222110 000000000 00 234577888888
Q ss_pred CCCHHH-HHHHHHHHHHHhhhcCCCCcchh--hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHH
Q 000098 1587 ERSAET-KKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLV 1659 (2256)
Q Consensus 1587 d~~~~v-R~~a~~~l~~L~~~l~~~~~l~~--~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~li 1659 (2256)
++++.. +..+..++..+. +++. +.. +-...++.|..++...+.++|..++.+|..++..-.+. .-...+
T Consensus 373 ~k~p~~vqe~V~eALasl~---gN~~-l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggI 448 (2102)
T PLN03200 373 PRDTKLVQERIIEALASLY---GNAY-LSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGV 448 (2102)
T ss_pred CCCCchhHHHHHHHHHHhc---CChH-HHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcH
Confidence 776553 555555554332 2210 000 11235667788888888999999999999988542111 012368
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 1735 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl 1735 (2256)
|.|.+.|.++ +...+..++..++.+..+...... .+.+|.+++.+.+++..+|+.++++++.++.. .++....+
T Consensus 449 p~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV 526 (2102)
T PLN03200 449 QLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACV 526 (2102)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 8999999874 456788888888887654333211 46889999999999999999999999999873 33444444
Q ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccc
Q 000098 1736 --QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2256)
Q Consensus 1736 --~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~ 1813 (2256)
...+|+++..+.+.+..+++.|+.++..+......+ .++.+...+..++.++...+++.+|.++....
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~------ 596 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA----TISQLTALLLGDLPESKVHVLDVLGHVLSVAS------ 596 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc------
Confidence 258999999999999999999999998887643333 44666666766777777778888888753110
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHH-HHHHHHHHHHH
Q 000098 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE-IMPVLMNTLIS 1892 (2256)
Q Consensus 1814 ~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~-~l~~Ll~~L~~ 1892 (2256)
.+ +. . ..... .+..++.|...+...+..+++.|..++..++.+.+..... +....++.++.
T Consensus 597 ------~~-d~----~-~~g~~------~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~ 658 (2102)
T PLN03200 597 ------LE-DL----V-REGSA------ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658 (2102)
T ss_pred ------hh-HH----H-HHhhh------ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH
Confidence 00 00 0 00000 0123455555666677889999999999998866553322 22334555566
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhCcc-----chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhh-HhhH
Q 000098 1893 SLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDEL 1966 (2256)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~~~~-----~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~-l~~l 1966 (2256)
.+.+.+.+++..++++|+.+....... .-...+|.|.+.+.+.+..++..++.+|+.+....... ... -...
T Consensus 659 LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~--~ei~~~~~ 736 (2102)
T PLN03200 659 LLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA--AEALAEDI 736 (2102)
T ss_pred HHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH--HHHHhcCc
Confidence 668889999999999999999733222 22457888999999988999999999998887654221 111 2456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh-H------HhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhh
Q 000098 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-I------DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039 (2256)
Q Consensus 1967 i~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~-~------~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~ 2039 (2256)
++.+.+.+.+.++++|+.|+.++..+++...... + ...+..|...|+..+....
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~------------------- 797 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS------------------- 797 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh-------------------
Confidence 8899999999999999999999999987543221 1 1234455555554332100
Q ss_pred hhhhhhcCchhhhHHHHHHHHHHHh-CCCcc--cc-----HhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc----ch
Q 000098 2040 ILPKLVHLPLSAFNAHALGALAEVA-GPGLN--FH-----LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI----DE 2107 (2256)
Q Consensus 2040 li~~L~~~p~~~~~~~aL~~La~~~-g~~l~--~~-----l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~----~~ 2107 (2256)
.....+.++..++..- |..+. |+ .+.=+.+|+.++.+.++.+++.+++.+..+|.-- ++
T Consensus 798 ---------~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~ 868 (2102)
T PLN03200 798 ---------ATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGD 868 (2102)
T ss_pred ---------hHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHH
Confidence 0001233444444321 11111 11 1223566777788888999999999999999732 11
Q ss_pred --hcHHHHHHHHHhh-cCCCChhhHHHHHHHHHHHHHhch------hhhhhhHHHHHHHHHHHcC
Q 000098 2108 --EGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSK------LYLVDEAPNMISTLIVLLS 2163 (2256)
Q Consensus 2108 --~~~~~ll~~Ll~~-l~~~~~~vR~~A~~~l~~l~~~~~------~~~~~y~~~il~~L~~~l~ 2163 (2256)
...+.-+..|-.. +++.++++|.+....+-.-++... .+-+.|...++..++.++.
T Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (2102)
T PLN03200 869 LIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLK 933 (2102)
T ss_pred HHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 0011112222222 356778888887766544443321 2345578888888888774
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=6.5e-18 Score=200.56 Aligned_cols=714 Identities=15% Similarity=0.149 Sum_probs=454.6
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~ 1506 (2256)
..++.....|..+...+..=..+.++..+ ..++|.+++.--++ +.|+-.+..+..+.+...+...++...|+=.+-.
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeD--qerhl~vk~idr~Ly~lddl~~pyvhkILvVv~p 253 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELED--QERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGP 253 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhh--hhhHhHHHHHHHHHHhcccccccceeeEEEEeec
Confidence 45677778888877766665555555544 77888777653332 3567778888888888776666666666655667
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH----HHHHHhcccccCCChhhHhhHHHHHH
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS----LDILLQTTFVNTVDAPSLALLVPIVH 1582 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a----l~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2256)
++-|+++.+|....+.+.+++...+= ...+..+-.-+...++++|+. ....+. .-.+..++|.+.
T Consensus 254 llided~~~r~~g~eii~nL~~~~Gl---~~~vs~mrpDi~~~deYVRnvt~ra~~vva~--------algv~~llpfl~ 322 (975)
T COG5181 254 LLIDEDLKRRCMGREIILNLVYRCGL---GFSVSSMRPDITSKDEYVRNVTGRAVGVVAD--------ALGVEELLPFLE 322 (975)
T ss_pred cccCccHHHhcccHHHHHHHHHHhcc---ceeeeeccCCcccccHHHHHHHHHHHHHHHH--------hhCcHHHHHHHH
Confidence 78899999998888888888776542 112222222234445677642 222221 123456788888
Q ss_pred HhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc---CchHHH
Q 000098 1583 RGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPDL 1658 (2256)
Q Consensus 1583 ~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~---~~~~~l 1658 (2256)
....++ +|+-|..+..++..+|.+++. ...+|+..++.++..++.|.+..||-.++.+++.+++..|+ +.|+.+
T Consensus 323 a~c~SrkSw~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 323 ALCGSRKSWEARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHhcCccchhhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 888876 999999999999999987653 46789999999999999999999999999999999998875 367888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH
Q 000098 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2256)
Q Consensus 1659 ip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y 1734 (2256)
+..|.+..++.... .-..-..+.+-++.-+.++|. .+.+..+...+.+++...+..........+.+-+..-..+
T Consensus 401 l~pLw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~l 479 (975)
T COG5181 401 LCPLWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKL 479 (975)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHH
Confidence 88888877764332 223333445555544455533 6677778888888877777665544433333333333334
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH---------HHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1735 LQQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1735 l~~ilp~Ll~~L~d~~~~VR~~Al---------~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
.+++.|.+++..-. |..|. .+-..+.+..+ -+.+...+.+...|+...-|...+.+...+...
T Consensus 480 r~~v~pefF~~fw~-----rr~A~dr~~~k~v~~ttvilAk~~g---~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~ 551 (975)
T COG5181 480 RDQVSPEFFSPFWR-----RRSAGDRRSYKQVVLTTVILAKMGG---DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSR 551 (975)
T ss_pred HHhhcHHhhchHHH-----hhhcccccccceeehhHHHHHHHcC---ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHh
Confidence 55666666543311 11111 00001111111 112222333333343333333333333222211
Q ss_pred hcCCCcccc-cc---------CCCCCC-Ccch-HHHHHH---HHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000098 1806 VAGTSGKAL-LE---------GGSDDE-GAST-EAHGRA---IIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1870 (2256)
Q Consensus 1806 ~~g~~~~~~-~~---------~~~ed~-~~~~-e~~~~~---l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~ 1870 (2256)
+ |..+-.+ .+ ...+++ ..+. -..... -.+..|..+...+++.+...+......||+.|+...+.
T Consensus 552 l-g~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~s 630 (975)
T COG5181 552 L-GRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGS 630 (975)
T ss_pred c-ccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 1 1100000 00 000000 0000 000000 01223444556678887778888888999999988777
Q ss_pred HHh---cChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc----chhchHHHHhhhcCCCChhhHHhH
Q 000098 1871 IVA---NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGV 1943 (2256)
Q Consensus 1871 l~~---~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~l~d~~~~vR~~a 1943 (2256)
++. +++++ +.+..+=..+.+.++...+++--....++..+...++-+ ....++|.|...+++....+..+.
T Consensus 631 l~~vlk~c~e~--~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nt 708 (975)
T COG5181 631 LAKVLKACGET--KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANT 708 (975)
T ss_pred HHHHHHhcchH--HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhH
Confidence 654 44432 345555566777888888998888888888888776543 345666666666665555555555
Q ss_pred HHHHHHHHHhhChhhh--HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHH
Q 000098 1944 CIGLSEVMASAGKSQL--LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTA 2021 (2256)
Q Consensus 1944 ~~aL~eii~~~~~~~l--~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~a 2021 (2256)
..-++.|.. .+++.. .++ -.+.-.+...+..-+.++|.+|..+||.+.+.+|+. +++..|++.|+..+.....
T Consensus 709 i~lvg~I~~-~~peyi~~rEW-MRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq---dvL~~LlnnLkvqeRq~Rv 783 (975)
T COG5181 709 IALVGTICM-NSPEYIGVREW-MRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ---DVLDILLNNLKVQERQQRV 783 (975)
T ss_pred HHHHHHHHh-cCcccCCHHHH-HHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH---HHHHHHHhcchHHHHHhhh
Confidence 544554443 333321 122 224444556667778899999999999999999985 5778889888876543322
Q ss_pred H-----HHHHHHHhhhcccchhhhhhhhhcCchh--hhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHH
Q 000098 2022 L-----DGLKQILSVRTTAVLPHILPKLVHLPLS--AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLA 2094 (2256)
Q Consensus 2022 l-----~~L~~il~~~~~~~lp~li~~L~~~p~~--~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a 2094 (2256)
. .-..+.++. -.++|.++..+.+|... .-.++++..+++..|.+-..|+..|.|.|-.++.|.|..-|+.+
T Consensus 784 ctsvaI~iVae~cgp--fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta 861 (975)
T COG5181 784 CTSVAISIVAEYCGP--FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTA 861 (975)
T ss_pred hhhhhhhhhHhhcCc--hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHH
Confidence 2 223333322 34677777666555432 23467888888999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc----hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHH
Q 000098 2095 KEAAETVTLVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2256)
Q Consensus 2095 ~~al~~l~~~~~----~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr 2170 (2256)
...+..+...+. ++.+-.+++.|...+-+++|.+-++..+++-.|.+..+.. .++..+.+.|-.|...||
T Consensus 862 ~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g------~~m~Yv~qGLFHPs~~VR 935 (975)
T COG5181 862 MNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG------AMMKYVQQGLFHPSSTVR 935 (975)
T ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH------HHHHHHHHhccCchHHHH
Confidence 999999998763 3556778888888888999999999888888887755432 345566777888999999
Q ss_pred HHHHHHHHHhh
Q 000098 2171 AAAWEALSRVV 2181 (2256)
Q Consensus 2171 ~~A~~aL~~l~ 2181 (2256)
+.-|..++.+.
T Consensus 936 k~ywtvyn~my 946 (975)
T COG5181 936 KRYWTVYNIMY 946 (975)
T ss_pred HHHHHHHhhhh
Confidence 99999888764
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.86 E-value=5e-16 Score=183.74 Aligned_cols=704 Identities=16% Similarity=0.151 Sum_probs=439.6
Q ss_pred cCchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000098 1332 QDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2256)
Q Consensus 1332 ~~~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l 1410 (2256)
..++..++..+.+.|.+.+ ....|..|+..|..-+..- ++....+.-.-| .
T Consensus 34 ~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~----------------------d~~~~~~~~qrW------~ 85 (858)
T COG5215 34 SGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHAN----------------------DPELQKGCSQRW------L 85 (858)
T ss_pred cccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcC----------------------CHHHHHHHHHhh------c
Confidence 4567777777777777654 4677877766654322211 222222111111 1
Q ss_pred ccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh-hhHhhHHhHHHHHHHhccCCCh-hHHHHHHHHHHHHHh
Q 000098 1411 GRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LSAQGVKLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAY 1487 (2256)
Q Consensus 1411 ~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~-l~~~~v~~ilp~Ll~~L~~~~w-~~R~~a~~~Lg~la~ 1487 (2256)
+ +.+-. .++-...+..++.+++..-..|.+.+..|+.. ++...++.++..+.....+.++ ..+..++..+|.+++
T Consensus 86 ~--~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 86 G--MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred c--CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 1 11111 23444566788889999999999999999875 4444467888888888887655 578889999999998
Q ss_pred hC-hhhHhhhhhhHHHHHHHh-h-cCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHHhhhCCCChhHHH-HHH
Q 000098 1488 CA-PQQLSQCLPKIVPKLTEV-L-TDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGLTDPNDHTKY-SLD 1558 (2256)
Q Consensus 1488 ~~-p~~l~~~L~~Ivp~L~~~-L-~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~Ll~~l~d~~~~vr~-al~ 1558 (2256)
.. |+.+......++-.++.+ + +.+...||.+|..||..-+..+++ .+...++....++.+.++..+.. +..
T Consensus 164 s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafg 243 (858)
T COG5215 164 SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFG 243 (858)
T ss_pred ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHH
Confidence 74 666666656666555443 3 467789999999999873333322 23355666667777777777763 333
Q ss_pred HHHh-----cccccCCChhhHhh-HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh---------------
Q 000098 1559 ILLQ-----TTFVNTVDAPSLAL-LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--------------- 1617 (2256)
Q Consensus 1559 ~L~~-----~~~~~~~~~~~l~~-i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l--------------- 1617 (2256)
.+.+ .+|+. +.+.. +.....+++++.+.++...+.+.+..+|+--.+..-...|+
T Consensus 244 Cl~kim~LyY~fm~----~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav 319 (858)
T COG5215 244 CLNKIMMLYYKFMQ----SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAV 319 (858)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHH
Confidence 3332 12222 22222 23445567888999999999999988886311211111222
Q ss_pred hhhhHHHHHhhc-------CCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1618 GLLLPEVKKVLV-------DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~-------d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g 1690 (2256)
..++|.+++++. +.+|.+..+|..||..++...|+..+..++.++-+.+++ +++..|..++.++|.+..+-.
T Consensus 320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~-~~w~nreaavmAfGSvm~gp~ 398 (858)
T COG5215 320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS-ESWANREAAVMAFGSVMHGPC 398 (858)
T ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC-chhhhHHHHHHHhhhhhcCcc
Confidence 347888888775 357999999999999999999988888888888888887 677789999999999987655
Q ss_pred Hh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1691 TV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1691 ~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~--yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
+. +..+.+|.+.....|+.-.+++.+.+|||.++......+.| |+.......+.++.|. +.+-.+..++...+
T Consensus 399 ~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nl 477 (858)
T COG5215 399 EDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENL 477 (858)
T ss_pred HHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhH
Confidence 54 44677788888888888899999999999998776654433 4555556666666653 33334444445555
Q ss_pred HHHhhccc---hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchh
Q 000098 1765 VEHYATTS---LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841 (2256)
Q Consensus 1765 v~~~~~~~---~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~ 1841 (2256)
+.++.+.. .+.+-| +
T Consensus 478 v~h~a~a~~~~~S~l~~--------------------------------------------------------------f 495 (858)
T COG5215 478 VDHIAKAVREVESFLAK--------------------------------------------------------------F 495 (858)
T ss_pred HHhhhhhhccccchhHH--------------------------------------------------------------H
Confidence 55443221 000000 0
Q ss_pred hHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC---------------CHHHHHH
Q 000098 1842 RNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS---------------SSERRQV 1904 (2256)
Q Consensus 1842 ~~~vl~~L~~~--~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~---------------~~~~R~~ 1904 (2256)
+..++..|... +.+...+.|.++.++++.++..+|..+.+++..+.+.+.+.+... ..+++..
T Consensus 496 Y~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN 575 (858)
T COG5215 496 YLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSN 575 (858)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 11111222111 122234456666666666666666555555555444443332211 2345555
Q ss_pred HHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChhhH-HhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHH
Q 000098 1905 AGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980 (2256)
Q Consensus 1905 A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~vR-~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~ 1980 (2256)
....|..+++..+.+ +-+.++..+.+.+...++.+- ..+..+++.+..+.+. .++.|.+.++|.+.+.+...+.-
T Consensus 576 ~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e-~Fe~y~~~fiPyl~~aln~~d~~ 654 (858)
T COG5215 576 YIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEE-RFEQYASKFIPYLTRALNCTDRF 654 (858)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHhcchhHH
Confidence 666777788877764 345577777777766555443 3466777777776654 57889999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhchh---hHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHH
Q 000098 1981 VRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057 (2256)
Q Consensus 1981 VR~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL 2057 (2256)
|...|....|.+...+|.+ +.+.++..|.++|.++... +.+-| ..+.++
T Consensus 655 v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~---------------R~lKP-------------aiLSvF 706 (858)
T COG5215 655 VLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATH---------------RDLKP-------------AILSVF 706 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhc---------------cccch-------------HHHHHH
Confidence 8888888888888887753 4566777777777665321 11222 245778
Q ss_pred HHHHHHhCCCccccHhhHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHH
Q 000098 2058 GALAEVAGPGLNFHLGTILPALLSAMGD--DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135 (2256)
Q Consensus 2058 ~~La~~~g~~l~~~l~~Ilp~Ll~~l~~--~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~ 2135 (2256)
+-++...|..|.+|+..|+-.+...-+- .+.++ ++..+...++++. ..|+-.
T Consensus 707 gDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~------------------~~~dy~~~~~~~v--------~~ayVg 760 (858)
T COG5215 707 GDIALAIGANFESYLDMIMMLFQQASELDPHSDEV------------------YVDDYRKNAVQLV--------NCAYVG 760 (858)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCce------------------eHHHHHHHHHHHH--------HHHHHH
Confidence 8888899999999999988777665321 11110 0011111011000 012222
Q ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHhhccCCCCc
Q 000098 2136 IGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS--TTVAAAWEALSRVVASVPKEV 2188 (2256)
Q Consensus 2136 l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~--~Vr~~A~~aL~~l~~~l~~e~ 2188 (2256)
|+.-.++-...+.||+..+...+-..-.|++- ...++|.+-++.++...|+..
T Consensus 761 I~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkge 815 (858)
T COG5215 761 IGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGE 815 (858)
T ss_pred hhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcc
Confidence 33333333344667777776655445567753 455788888999988888763
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.85 E-value=4.6e-18 Score=220.50 Aligned_cols=556 Identities=21% Similarity=0.259 Sum_probs=405.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc
Q 000098 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2256)
Q Consensus 1350 ~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l 1429 (2256)
++..-|..+..-+..+....|.... ...++|++.+.. +. +.++.+.+..-|+.+....|. ..|..-++|.+....
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l~ 168 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELLA 168 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhhh
Confidence 3456677777777777777776655 457999999888 33 455555555545444443331 233445677777788
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHH-HHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh
Q 000098 1430 SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK-QSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2256)
Q Consensus 1430 ~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R-~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L 1508 (2256)
.+....||+++.+.+..+...++.......+-+++..+...+|+.. ..++..++..+...++...+ .++.|...++.
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk--~elr~~~~~lc 246 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK--RELRPIVQSLC 246 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH--HHHHHHHHhhc
Confidence 8889999999999999998888877765555566666665588864 45778888877777643222 35666777889
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcC
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d 1587 (2256)
+|..+.||.+++.-++.++.++.+... ..++|.+.. ...|
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~---------------------------------------L~~D 287 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQ---------------------------------------LLRD 287 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhh---------------------------------------hhhc
Confidence 999999999999999999987765322 334444444 4444
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-chHHHHHHHHHHh
Q 000098 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDAL 1666 (2256)
Q Consensus 1588 ~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-~~~~lip~Ll~~L 1666 (2256)
....+|..|.....++..++.+.. +....+.+.+++...|++|.+|.........+...+|++ ......+.....+
T Consensus 288 dqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~ 364 (759)
T KOG0211|consen 288 DQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLL 364 (759)
T ss_pred chhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHh
Confidence 444666666666666666543321 445568889999999999999999999999999999875 3345667777777
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHH
Q 000098 1667 KSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2256)
Q Consensus 1667 ~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~ 1741 (2256)
++ ..+..|...+.-...+...+..+ ....++|.+...+.+.+.+||.+.......+...+|. ..-+..+.|.
T Consensus 365 ~~-~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~ 441 (759)
T KOG0211|consen 365 KD-EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPL 441 (759)
T ss_pred cc-hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChh
Confidence 65 45556777776677666655522 3466789999999999999999988877777777763 2455667888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhhc---cc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000098 1742 ILDGLADENESVRDAALGAGHVLVEHYAT---TS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2256)
Q Consensus 1742 Ll~~L~d~~~~VR~~Al~al~~iv~~~~~---~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~ 1817 (2256)
.+..++|+.+.||.....-+..+...... .. -+.++|.+.+...|.+||+|.+.++.+..++.
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~------------- 508 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL------------- 508 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH-------------
Confidence 99999999999998877544333322222 22 24488888888888899999999998887742
Q ss_pred CCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhcCh--hHHHHHHHHHHHHHHHHh
Q 000098 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSL 1894 (2256)
Q Consensus 1818 ~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~-~~D~~~~Vr~aA~~~l~~l~~~~~--~~l~~~l~~Ll~~L~~~L 1894 (2256)
.+|.+++++.+..+++. +.|....+|++|...+..++...+ +.....+|.++...
T Consensus 509 ------------------q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~---- 566 (759)
T KOG0211|consen 509 ------------------QLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMD---- 566 (759)
T ss_pred ------------------hhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHh----
Confidence 22333444445555554 678888999999999999988766 55666666665543
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHH
Q 000098 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~ 1973 (2256)
.++++.+|.+...++..++..+|.+ +-..++|.+.++..|+.+++|.+++..+..++......... ..+.|.+...
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L 643 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETL 643 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHh
Confidence 5668999999999999999999988 56889999999999999999999999999888777654333 4466666666
Q ss_pred hcCCCHHHHHHHHHHHHHHHHH
Q 000098 1974 LCDSILEVRESAGLAFSTLFKS 1995 (2256)
Q Consensus 1974 L~D~~~~VR~~A~~al~~l~~~ 1995 (2256)
..|.+.+||..|..+++.+...
T Consensus 644 ~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 644 SSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred ccCcccchhHHHHHHHHHHHHH
Confidence 7799999999999999988654
No 23
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.81 E-value=5.8e-17 Score=210.34 Aligned_cols=552 Identities=20% Similarity=0.227 Sum_probs=395.2
Q ss_pred chhHHHHHHHHHhhhhhccC-ChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHH-hhccccccchHHHHHHHhhccCCC
Q 000098 1192 LGRQGIALALHSAADVLRTK-DLPVIMTFLISRALADTNADVRGRMLNAGIMIID-KHGRDNVSLLFPIFENYLNKKASD 1269 (2256)
Q Consensus 1192 ~~R~~~~~aL~~l~~~~~~~-~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~-~~g~~~~~~Ll~~l~~~L~~~~~~ 1269 (2256)
.-|..+..-+..++...+.+ ....+++|+ .++. +.+.+|+..+.+-...+.. .+|+++...+++.++.... +
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~tr~~lipf~-~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~----~ 170 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVERTRLELIPFL-TEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLAT----V 170 (759)
T ss_pred hhhhhhhccccchhhhcccchhhhhhhhHH-HHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhH----H
Confidence 34444444444444444333 245577887 5677 8899999888765444443 4556667778888887743 3
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHh-hHHhHHhhc-CchHHHHHHHHHHHh
Q 000098 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSC-LSPLMQSMQ-DEAPTLVSRLLDQLM 1347 (2256)
Q Consensus 1270 ~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~-L~~lv~~~~-~~~~~~l~~Ll~~L~ 1347 (2256)
++. .+|+.+++.+..++..+++.. ....+-.++..+...++.-.+..+.. ......... +....-+...+..+.
T Consensus 171 eet--~vr~k~ve~l~~v~~~~~~~~--~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc 246 (759)
T KOG0211|consen 171 EET--GVREKAVESLLKVAVGLPKEK--LREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLC 246 (759)
T ss_pred HHH--HHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhc
Confidence 444 789999999988887665543 24445555555554444332322211 222222222 345667778888999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~ 1427 (2256)
++..+++|+.++.-++.+++.++.... ...++|.+..
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~~-------------------------------------------~s~v~~~~~~ 283 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEIV-------------------------------------------KSEVLPTLIQ 283 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHHH-------------------------------------------HhhccHHHhh
Confidence 998999999999988888776642111 1234555666
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhHh-hH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSAQ-GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~~-~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~ 1505 (2256)
...|+...||.+|..++..+...+... .+ +.+.+.+++..+|.+|++|....+....+......+. .-+..++...
T Consensus 284 L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~--~~~~~~~~~~ 361 (759)
T KOG0211|consen 284 LLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA--TRTQLVPPVS 361 (759)
T ss_pred hhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc--CcccchhhHH
Confidence 777888999999999998888877665 43 7788999999999999999987777777666654432 2346678888
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCc---hhH--HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHH
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN---PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i--~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2256)
..++|...++|.++..-...++...+. +.+ +.++|.+.....|.+.++|.+..........-.........+.|.
T Consensus 362 ~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~ 441 (759)
T KOG0211|consen 362 NLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPL 441 (759)
T ss_pred HHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChh
Confidence 899999999999999999988887763 222 677899999999999999865543322000000123355667889
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHH-HH
Q 000098 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD-LV 1659 (2256)
Q Consensus 1581 L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~-li 1659 (2256)
+...+++..+.+|......+..+-. +.+...+..+.+.++|.+..+..|..|++|.+....+..++...|..++.+ +-
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~ 520 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLA 520 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence 9999999999999887665544443 345566677888999999999999999999999999999999888665544 33
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~i 1738 (2256)
+.++..+.+ ..+..|.+++..+..++..+|.+ ....++|.++....++++.+|.+.+.++..++..+|.++ +...+
T Consensus 521 ~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~L 597 (759)
T KOG0211|consen 521 ELLRTWLPD-HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDL 597 (759)
T ss_pred HHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHH
Confidence 333444443 55669999999999999999965 557888999888888899999999999999999999987 77899
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchh-chHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1739 lp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~-~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
+|.+..+..|++++||.++++.+..++........+ .+.|.+.....|.+-.+|..+....+.+
T Consensus 598 lp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 598 LPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred hHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 999999999999999999999999998877655443 3667666665565444444455555444
No 24
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.73 E-value=1.6e-13 Score=176.35 Aligned_cols=814 Identities=20% Similarity=0.195 Sum_probs=421.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000098 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~ 1414 (2256)
+...+..|.+.+++. .|.+|++++.++.++++..|..... ..++ +--.|....+++ ..+|+
T Consensus 75 f~s~~e~L~~~~~~~-~we~rhg~~i~lrei~~~h~~~~~~--~~le----------d~~~rll~v~~L----drf~d-- 135 (1549)
T KOG0392|consen 75 FLSFLEELVNDLFEP-QWEIRHGAAIALREILKTHGDSLSY--ELLE----------DLLIRLLCVLAL----DRFGD-- 135 (1549)
T ss_pred HHHHHHHHHHHhcCc-hhhhhcCcchhhhhHHHHhcchhhH--HHHH----------HHHHHHHHHHHH----HHhcc--
Confidence 456677777777654 5999999999999999988754321 1111 111111111111 11121
Q ss_pred hHhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1415 EPYVIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D-~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
| +.| -...||++++++++.+..++....+.+.+..+.+.+....|+.|++.+..+.+......+.+
T Consensus 136 --f-----------isd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l 202 (1549)
T KOG0392|consen 136 --F-----------ISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL 202 (1549)
T ss_pred --c-----------ccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH
Confidence 1 122 24689999999999999999988889999999999998899999998888776665444555
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhhhCCCCh------hHHHHHHHHHhcc
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPND------HTKYSLDILLQTT 1564 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i~~lv~~Ll~~l~d~~~------~vr~al~~L~~~~ 1564 (2256)
...++.+++.++++++|++..||..|...+..+.....+ ..+..++..++..+.+-++ ..+.-++.+....
T Consensus 203 ~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~ 282 (1549)
T KOG0392|consen 203 FQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN 282 (1549)
T ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH
Confidence 567788999999999999999999999999888776522 2445666666665543222 1121122111100
Q ss_pred cccCC--ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc--chhhhhhhhHHHHHhh-cCCCHHH----
Q 000098 1565 FVNTV--DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD--MIPYIGLLLPEVKKVL-VDPIPEV---- 1635 (2256)
Q Consensus 1565 ~~~~~--~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~--l~~~l~~Ll~~L~~~L-~d~~~~V---- 1635 (2256)
-+-+. .......++|-+...+++.-..+|..++..+..+.+. .+... -.+.+..++..+.+.+ -++..+.
T Consensus 283 evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~-~~qs~~~~~~~l~~~~r~ifq~ll~e~~~e~L~~~ 361 (1549)
T KOG0392|consen 283 EVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEA-DDQSDSWQIRILGKLFRKIFQILLLESFNEILDLS 361 (1549)
T ss_pred HHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhhhHHHHHHHHHHHHhCCcHHHHHhh
Confidence 00000 0000123455555555555557788888888888774 32222 1222333333333332 2222221
Q ss_pred -----------HHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHh
Q 000098 1636 -----------RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN 1704 (2256)
Q Consensus 1636 -----------R~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~ 1704 (2256)
+..+......+.-.+++.- +.-.+...+.....+.....++..-+ ........ ...........
T Consensus 362 ~~~~v~v~~~~k~a~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~q~~~~~~~~~g-~~~~~~s~-~~~~~~~~~i~ 436 (1549)
T KOG0392|consen 362 EKVWVTVSKIEKTAAAYLLSWIYLLIQPNG---IPLGLVGLLDSGPDWQHQFSALIAKG-YSKEFSSD-KEGLCRKEVIL 436 (1549)
T ss_pred hheeeehHHHHHHHHHHHHHHHHhhhCcCC---ChHhhhhccccCcHHHHHHHHHHhhc-cccccccc-cchhhhhhhhc
Confidence 1111111222222222110 00000001111111111111111111 00000000 00000111111
Q ss_pred ccCC--CHHHHHHHHHH----HHHhHh----hhChhHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhhc
Q 000098 1705 CSHQ--RASVRDGYLTL----FKYLPR----SLGVQFQNYLQQVLPAILDGLAD----ENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1705 l~~~--~~~vR~~al~~----l~~La~----~~g~~f~~yl~~ilp~Ll~~L~d----~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
+..+ +......-+.+ .+.++. +-+..-...++.+...+..-+.. .+..+-....+ +..+......
T Consensus 437 l~~~~~D~~~ls~~il~~~~~~~~~~~~l~~~~~t~~~~~~~~~v~~l~~~l~sks~~~~~~vsi~~~~-w~~~~~~~~~ 515 (1549)
T KOG0392|consen 437 LDSPDEDIVLLSAKILCHAKILGSLDLALEKCDSTIESEELISVVQLLNLPLLSKSYLQNIEVSIVPEE-WAALFPCGTS 515 (1549)
T ss_pred CCCCccchhhhhhhhhcCCcchhHHHHHHHHhhhhhhhccchhHHHhhhhhhhhhhhhhccchhhhHHH-HHHhccccCC
Confidence 1111 11111110000 011110 00000000001111111110100 00000000000 0001000000
Q ss_pred ---cchhchHHHHHhhc--CCCC----------HHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHH
Q 000098 1771 ---TSLPLLLPAVEDGI--FNDN----------WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2256)
Q Consensus 1771 ---~~~~~llp~L~~~l--~d~~----------~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~ 1835 (2256)
..-+.+++.+.... .++. -+.|..+=+++..++.. .+....+.. ...++. .......+
T Consensus 516 ~~~~v~~~~L~i~~~~~~vr~~~~~y~e~~~v~~~~~~ec~ell~~l~~~-~~~~~n~~~--l~~~~~----~v~~s~y~ 588 (1549)
T KOG0392|consen 516 PPSEVKPSLLDILKNADIVRDEFLDYDELEVVLTELRNECRELIITLVDV-RRDLPNNEI--LTFDET----DVGGSLYE 588 (1549)
T ss_pred CCccccccHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHh-hccCccchh--eeechh----hhhhhhch
Confidence 00011222222110 0111 23344555555555432 111111100 000000 00000000
Q ss_pred Hh------------cchhhHHHHHHHHHHhcC-CcHHHHHHHHHH-HHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHH
Q 000098 1836 VL------------GRDKRNEVLAALYMVRSD-VSLSVRQAALHV-WKTIVANTPKTLKEIMPVLMNTLISSLASSSSER 1901 (2256)
Q Consensus 1836 ~L------------g~e~~~~vl~~L~~~~~D-~~~~Vr~aA~~~-l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~ 1901 (2256)
.+ +...++.++......... .....|..+.-. ......+.|..+.+++..+++.+. .+.+...
T Consensus 589 ~~~~~~~~~~q~l~~~ss~~~v~~~~~~~k~~~~~~~~~i~s~~a~~~~~~~~~pekl~p~I~plm~tik---~e~n~~~ 665 (1549)
T KOG0392|consen 589 EYSENDFLEKQVLYLDSSRQQVLMTIEILKNRCKLLEIRIKSLLASAVVTFETLPEKLNPIIRPLMETIK---KEENAML 665 (1549)
T ss_pred hhcccccCCchheeecchhhHHHhhHHHHHHHHhhcchhhhhchhhHHHHHhcCchhhhhHHHHHHHHHH---hhhHhHh
Confidence 00 122233344333332111 011122211111 111234578888888888888876 4455667
Q ss_pred HHHHHHHHHHHHHhhCcc---chhchHHHHhhh-cCCCC--hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHH---
Q 000098 1902 RQVAGRALGELVRKLGER---VLPSIIPILSRG-LKDPS--ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT--- 1972 (2256)
Q Consensus 1902 R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~-l~d~~--~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~--- 1972 (2256)
+.++.+++..++..+.+. ...+++...... ..++. |. ++ ...++. .+.+.........
T Consensus 666 q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p~~~p~--------~~---a~~~~~--~~~~~~~~~s~~~~~~ 732 (1549)
T KOG0392|consen 666 QPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDPSRAPG--------LG---ASIRSI--HPMVDPLINDYTRMVA 732 (1549)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCcccCCc--------cc---cccccc--cccccccccchhhhhc
Confidence 888889988888766432 222333222211 11111 11 00 000000 0001111111100
Q ss_pred -Hh---cCCCH----HHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhh
Q 000098 1973 -AL---CDSIL----EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 2044 (2256)
Q Consensus 1973 -~L---~D~~~----~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L 2044 (2256)
.+ .++.. --|+.|..++..+.+.+|...+. -+|.|+++|-..- .+..... +..+
T Consensus 733 ~~~~~g~eea~~~~~~errgael~L~~l~~~fg~sl~~-klp~l~~~L~~~L---------~~~~~~~-d~~~------- 794 (1549)
T KOG0392|consen 733 SNLAPGLEEAQALISFERRGAELFLKILSKMFGGSLAA-KLPHLWDFLLKAL---------SGLIDGN-DEFL------- 794 (1549)
T ss_pred cccCcchhhhhhhHHHHhhhHHHHHHHHHHHhhHHHHH-hcchHHHHHHHhh---------hccCCCC-cchh-------
Confidence 00 11111 22788888999999999987655 4677776553211 0000000 0111
Q ss_pred hcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCC
Q 000098 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDN 2124 (2256)
Q Consensus 2045 ~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~ 2124 (2256)
.....+.+++..+|+.+.+ +.+.+|.++..+.+....+|.+++.|++.+......+.+..+++.++.++++.
T Consensus 795 -------~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 795 -------SSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred -------hhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 2345666777778888888 77888999999999999999999999999999766677788888888888876
Q ss_pred C-hhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHhhh
Q 000098 2125 Q-ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203 (2256)
Q Consensus 2125 ~-~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~~~ 2203 (2256)
+ ...|+++...++.+.......+.+|.+.++++++++++|....||.+|..+++.+++.+|.+..+.-.+.+.+.|...
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ 946 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLAS 946 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHh
Confidence 5 556777778888888888888999999999999999999999999999999999999999887777777888999988
Q ss_pred hhhhhhh--ccCCccccCCcCCCCcchhhHHHHHH
Q 000098 2204 RDKERRK--KKGGPILIPGFCLPKALQPLLPIFLQ 2236 (2256)
Q Consensus 2204 ~d~~r~~--~~g~~~~l~g~~lp~~i~~~Lp~~~~ 2236 (2256)
+.++|++ +.+.+.++|.|.+|..|+.-|+.|||
T Consensus 947 ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQq 981 (1549)
T KOG0392|consen 947 KEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQ 981 (1549)
T ss_pred HHHHHHHHHHhcCcccCCccccccchhHHHHHHHH
Confidence 8888875 55566889999999999999999996
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=3.2e-12 Score=153.10 Aligned_cols=425 Identities=17% Similarity=0.220 Sum_probs=308.5
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhhhhHh----hHHhHHHHHH-HhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000098 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2256)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~l~~~l~~~----~v~~ilp~Ll-~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2256)
...++|..-+-|++|+.-+..+++.+... .+.+++..+. +...+.+-..|+|++..+.+++-+.+..-..++..+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 34677888888999988888887765442 3566676444 445566777778999999988887766655699999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhhhCCCChhHHH---HHHHHHhcccccCCChhhH
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTKY---SLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~Ll~~l~d~~~~vr~---al~~L~~~~~~~~~~~~~l 1574 (2256)
+|.++.+++|++..||.-||+++.+++++.+.. ++..+...+++...|++..++. -++.+++-........-++
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCH
Confidence 999999999999999999999999999998764 5589999999999999988874 4555554111112224578
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~ 1654 (2256)
+.++|.+...+...++.+|.....++..+-.. ..-++..|++.++++|++.+.|++.+||..+-.+++.+...+..+
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~- 242 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS- 242 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-
Confidence 89999999999999999999877777666542 334567899999999999999999999999888888776544311
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y 1734 (2256)
+... ....+.+.++..+.++++..+..++..+..+....|.++.+|
T Consensus 243 ---------------P~s~-------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 243 ---------------PSSM-------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred ---------------cccc-------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 1110 123445556666777788888888877888888889999999
Q ss_pred HHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHhh----cc--chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhc
Q 000098 1735 LQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYA----TT--SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807 (2256)
Q Consensus 1735 l~~ilp~Ll~~L~d~~~-~VR~~Al~al~~iv~~~~----~~--~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~ 1807 (2256)
+.+++..++.++.|..+ .+++.+...-..+...++ .+ .+..++..+.+.+.++....|.++++.+..+..+.+
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP 368 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence 99999999999998876 466665444333332222 11 234688999999999999999999999888764433
Q ss_pred CCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCh-hHHHHHHHHH
Q 000098 1808 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVL 1886 (2256)
Q Consensus 1808 g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~-~~l~~~l~~L 1886 (2256)
|.... +.+.+...|...++|.+..|-..++..+..++.... +.+.+++..+
T Consensus 369 ~ql~~----------------------------h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sL 420 (675)
T KOG0212|consen 369 GQLLV----------------------------HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSL 420 (675)
T ss_pred chhhh----------------------------hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 32110 123466667778899999999999999988876432 2455555555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc
Q 000098 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2256)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2256)
++.. ....--.+..+.--+.++|-.+...
T Consensus 421 L~~f----~e~~~~l~~Rg~lIIRqlC~lL~aE 449 (675)
T KOG0212|consen 421 LEMF----KEDTKLLEVRGNLIIRQLCLLLNAE 449 (675)
T ss_pred HHHH----hhhhHHHHhhhhHHHHHHHHHhCHH
Confidence 5544 3444455566666667777655543
No 26
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-09 Score=141.07 Aligned_cols=804 Identities=17% Similarity=0.191 Sum_probs=426.6
Q ss_pred CcchHHHHHHHHHHcCCCCHHHH--HHHHHhhHHhHHhhc--------CchHHHHHHHHHHHhc-----CCCHHHHHHHH
Q 000098 1295 DPKVHAVVDKLLDVLNTPSEAVQ--RAVSSCLSPLMQSMQ--------DEAPTLVSRLLDQLMK-----SDKYGERRGAA 1359 (2256)
Q Consensus 1295 ~~~i~~il~~Ll~~L~~~~~~Vq--~~~~~~L~~lv~~~~--------~~~~~~l~~Ll~~L~~-----~~~~~vR~~Aa 1359 (2256)
||.++.+++.+............ ..+.+-+..+....+ +..-.+++.++..|.. ..+|..|-...
T Consensus 67 Dp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilL 146 (1133)
T KOG1943|consen 67 DPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILL 146 (1133)
T ss_pred cchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 46666777777665544433322 223333333332221 1123445556665551 12578887777
Q ss_pred HHHHHHHhhh-Cccc------chhhcHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcC
Q 000098 1360 FGLAGVVKGF-GISS------LKKYGIAATLREGLAD--RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2256)
Q Consensus 1360 ~~L~~lv~~~-g~~~------~~~~~il~~L~~~l~~--~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~ 1430 (2256)
.-|.-++... .... .++..+|..+....++ ..+|..|+.+...++.+.... ...+++..++..++.+-+
T Consensus 147 lWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~~~r~~aalllsk~~sR~--D~~~~~~~Fl~~~l~~~s 224 (1133)
T KOG1943|consen 147 LWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSGILRRSAALLLSKLFSRT--DVKDLLLSFLDWLLDCPS 224 (1133)
T ss_pred HHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccchhHHHHHHHHHHHcccc--cHHHHHHHHHHHhhcccc
Confidence 6666666532 1111 1122334444443321 113455666655444443221 234445555555555555
Q ss_pred CCcHH--HHHHHHHHHHHHHhhhhHh------------------------hHHhHHHHHHHhc-------cCCChhHHHH
Q 000098 1431 DQVVA--VREAAECAARAMMSQLSAQ------------------------GVKLVLPSLLKGL-------EDKAWRTKQS 1477 (2256)
Q Consensus 1431 D~~~~--VR~aa~~al~~l~~~l~~~------------------------~v~~ilp~Ll~~L-------~~~~w~~R~~ 1477 (2256)
+..++ +......++..+.++.+.. -+.+.++.+++.+ .+.+|+..++
T Consensus 225 ~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg 304 (1133)
T KOG1943|consen 225 TETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRG 304 (1133)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcc
Confidence 44433 2223344444444333221 1244566666643 2467887766
Q ss_pred HHHHHHHHHhh---------------ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000098 1478 SVQLLGAMAYC---------------APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2256)
Q Consensus 1478 a~~~Lg~la~~---------------~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L 1542 (2256)
.-.+.+.+-.. ..++....++.++..|...++|.+..||..|++.++.+....+..-.++.+...
T Consensus 305 ~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~sv 384 (1133)
T KOG1943|consen 305 TRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSV 384 (1133)
T ss_pred cchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 44333332111 011233456678888889999999999999999999999887633335666666
Q ss_pred HhhhCCCC-hhH-HHHHHHHHhcccccCCChhhHhhHHHHHHHhhc--------CCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000098 1543 LMGLTDPN-DHT-KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR--------ERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2256)
Q Consensus 1543 l~~l~d~~-~~v-r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~--------d~~~~vR~~a~~~l~~L~~~l~~~~~ 1612 (2256)
++.+.--+ +.. -.++-++++...-.-.....+..++|++..++. ..+..+|-.||.++-.++.. ..+.+
T Consensus 385 id~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~ 463 (1133)
T KOG1943|consen 385 IDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YSPSD 463 (1133)
T ss_pred HHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CChhh
Confidence 66332211 111 122223332222222333456788999888773 24568999999999999985 56788
Q ss_pred chhhhhhhhHHHH-HhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1613 MIPYIGLLLPEVK-KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~-~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
+.|+++.+.+.|. ..+-|+.-..|.+|..|+...+...| .++.-++.+. + .+.-.-..|..+-..++..+..+.
T Consensus 464 l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~--n~p~Gi~Lis-~-~dy~sV~~rsNcy~~l~~~ia~~~- 538 (1133)
T KOG1943|consen 464 LKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQG--NFPHGISLIS-T-IDYFSVTNRSNCYLDLCVSIAEFS- 538 (1133)
T ss_pred hhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCC--CCCCchhhhh-h-cchhhhhhhhhHHHHHhHHHHhhh-
Confidence 9999998888654 45679999999999999887665443 2333333221 1 111112234444444555554442
Q ss_pred hHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1692 VYFEHILPDIIRN-CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1692 ~~l~~ll~~ll~~-l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
.+.++++..++.. +.+-+..+|+.+..++..+.....+.+. +..+|++++.....+...|.+...+++.++.+...
T Consensus 539 ~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a---~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~ 615 (1133)
T KOG1943|consen 539 GYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA---DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRK 615 (1133)
T ss_pred hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc---ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhh
Confidence 3567777777766 8888999999999999998877665433 24678888877777888898888777776554321
Q ss_pred cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHH
Q 000098 1771 TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2256)
Q Consensus 1771 ~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~ 1850 (2256)
- ..+.+.+.+ .| +..+. .++..++
T Consensus 616 l--~~~~~~l~e--------~~---i~~l~-------------------------------------------~ii~~~~ 639 (1133)
T KOG1943|consen 616 L--EPVIKGLDE--------NR---IAGLL-------------------------------------------SIIPPIC 639 (1133)
T ss_pred h--hhhhhhhHH--------HH---hhhhh-------------------------------------------hhccHHH
Confidence 1 001111100 00 00000 0111111
Q ss_pred HHhcCCc--HHHHHHHHHHHHHHHhcChhHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh--Cccchh-ch
Q 000098 1851 MVRSDVS--LSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKL--GERVLP-SI 1924 (2256)
Q Consensus 1851 ~~~~D~~--~~Vr~aA~~~l~~l~~~~~~~l~~~l~~-Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~--~~~~l~-~l 1924 (2256)
....+.- .-.|.+.......+..+-++.+.+++-. .-..+...+.+++ .+|..+..++++++... ++.... .+
T Consensus 640 ~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~l 718 (1133)
T KOG1943|consen 640 DRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPL 718 (1133)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHH
Confidence 1110100 2244444455555544444433333333 2222333334555 88999999999999743 232222 35
Q ss_pred HHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhH-hhHhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhc----
Q 000098 1925 IPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLL-SFMDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAG---- 1997 (2256)
Q Consensus 1925 lp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~-~~l~~li~~l~~~L-~D~~~~VR~~A~~al~~l~~~~g---- 1997 (2256)
+......+.+. +...|++...+++.+-. ..+. ++.+.+...+.... .|..++-|.....++..+++.++
T Consensus 719 i~~~ls~~~~~~~~~~r~g~~lal~~lp~----~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~ 794 (1133)
T KOG1943|consen 719 ITRYLSRLTKCSEERIRRGLILALGVLPS----ELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLF 794 (1133)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHccCcH----HhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555 57788887776653321 1111 22333444444333 35578889999999999988877
Q ss_pred hhhHHhHHHHHHHhhccCCc----------hHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHh--C
Q 000098 1998 MQAIDEIVPTLLHALEDDQT----------SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA--G 2065 (2256)
Q Consensus 1998 ~~~~~~ilp~Ll~~L~~~~~----------~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~--g 2065 (2256)
...++++...|+++|++-.. ++.|+.++..+. ... +
T Consensus 795 ~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~--------------------------------~~l~~p 842 (1133)
T KOG1943|consen 795 SESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL--------------------------------DTLSSP 842 (1133)
T ss_pred cccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh--------------------------------hhhcCc
Confidence 24567888889998877321 112222222221 111 1
Q ss_pred CCcccc-HhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc----chhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000098 2066 PGLNFH-LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI----DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFY 2140 (2256)
Q Consensus 2066 ~~l~~~-l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~----~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~ 2140 (2256)
+-+.+. ...++..+++.-.++-...|+.+..|+..++..- .-++.+.+...+-....+-.+..-.........+
T Consensus 843 ~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~f~L~~~L- 921 (1133)
T KOG1943|consen 843 KLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPTLFPLNSSL- 921 (1133)
T ss_pred ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccchhhhHHHHH-
Confidence 112221 2223333344333444556888888888877651 1122333333222111111222222222222222
Q ss_pred HhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc---cCCCCchhchHHHHHHHHhhhhhhhh
Q 000098 2141 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA---SVPKEVQPSYIKVIRDAISTSRDKER 2208 (2256)
Q Consensus 2141 ~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~---~l~~e~l~~lv~~l~~~l~~~~d~~r 2208 (2256)
..+..|...++..+...+..--...++.|..++-..++ ..|+. .+.+-..+.+......-++|
T Consensus 922 ----l~~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R~~~~dp~t-~~~~~stl~~~~~~~l~~er 987 (1133)
T KOG1943|consen 922 ----LELPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVRDENSDPKT-IGSRDSTLLQLIEEALLNER 987 (1133)
T ss_pred ----HhhHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhcCccc-ccchHHHHHHHHHHHHHHHH
Confidence 12444666666666666665455677788877777766 34433 44555555555555444444
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=2.5e-11 Score=145.70 Aligned_cols=423 Identities=19% Similarity=0.237 Sum_probs=299.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HHH
Q 000098 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFE 1695 (2256)
Q Consensus 1623 ~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~ 1695 (2256)
.+...+.|...+-|.+|+--+..+++.+-.. .+..++..+............|.|+..+++.+.-++|.+ |.+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 3455677888999999999999999865322 345566655554444455556788889999888888876 789
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhc
Q 000098 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775 (2256)
Q Consensus 1696 ~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~ 1775 (2256)
.++|.++..+.|++..+|-.+|..+-.+++....++-+|.+.+...+.+...|.+..||.+|- .+..+++....
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVt----- 157 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVT----- 157 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhcc-----
Confidence 999999999999999999999999999999999988999999999999999999999987642 22222211100
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcC
Q 000098 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2256)
Q Consensus 1776 llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D 1855 (2256)
+++..+. .+++++-|-....+
T Consensus 158 -------------------------------------------e~~~tFs----------------L~~~ipLL~eriy~ 178 (675)
T KOG0212|consen 158 -------------------------------------------ESASTFS----------------LPEFIPLLRERIYV 178 (675)
T ss_pred -------------------------------------------ccccccC----------------HHHHHHHHHHHHhc
Confidence 0000010 01122222222345
Q ss_pred CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc----chhchHHHHhhh
Q 000098 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRG 1931 (2256)
Q Consensus 1856 ~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~ 1931 (2256)
.+...|+..+..+..+-...+..+-.|+|.+++.+...|++++.++|..+-.+++++....... -.+++++.+...
T Consensus 179 ~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~ 258 (675)
T KOG0212|consen 179 INPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPH 258 (675)
T ss_pred CCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccc
Confidence 5566777777766666555667788899999999999999999999999999999998866433 357888999999
Q ss_pred cCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhchhhH------HhH
Q 000098 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQAI------DEI 2004 (2256)
Q Consensus 1932 l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~-~VR~~A~~al~~l~~~~g~~~~------~~i 2004 (2256)
++++++..+..+..|+.+++...|+. +.+|...++..+..++.|.++ ..++.|...-+.+.+.++.... ..+
T Consensus 259 l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~i 337 (675)
T KOG0212|consen 259 LQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSI 337 (675)
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHH
Confidence 99999999999999999998776654 567889999999999988877 4777665554445444332211 133
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhC
Q 000098 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMG 2084 (2256)
Q Consensus 2005 lp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~ 2084 (2256)
+..+.+.+.++.+. +-+ ....-+..|...++..+..|.+.|++.|++.+.
T Consensus 338 i~vl~~~l~~~~~~-tri-----------------------------~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 338 IEVLTKYLSDDREE-TRI-----------------------------AVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHhhcchHH-HHH-----------------------------HHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc
Confidence 33333333332210 111 112223334455677888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHH
Q 000098 2085 DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141 (2256)
Q Consensus 2085 ~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~ 2141 (2256)
|+++++-..+...++.++.+....+...++..|++..+.+..-.+.-+.-.+.++|-
T Consensus 388 d~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 388 DRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred CchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 999999999999999999876666778888888888776553333333334444443
No 28
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2e-07 Score=122.70 Aligned_cols=759 Identities=17% Similarity=0.166 Sum_probs=415.0
Q ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHhhHHhHHhhcC------chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000098 1299 HAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQD------EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370 (2256)
Q Consensus 1299 ~~il~~Ll~~L~--~~~~~Vq~~~~~~L~~lv~~~~~------~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g 1370 (2256)
..++..|...+. +.+..|.+.+..||..++...+- .....+..++....+. .+.+|..|..+++.++.+..
T Consensus 92 s~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~-~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 92 SDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHK-KPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHcCCC
Confidence 344444444433 66778999999999999876421 2344555555555444 57899999999999998543
Q ss_pred cccch-hh---cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000098 1371 ISSLK-KY---GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2256)
Q Consensus 1371 ~~~~~-~~---~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2256)
-.... .+ .+..+..+.++..-.+..-...+..+..|-..+...-.+.+..+-..++..++..+..|+-.+.+++..
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~ 250 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHS 250 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 11111 01 233333333433322222333333343333334443367788888899999999999999999999999
Q ss_pred HHhhhhHhh----HHhHHHHHHHhccCC-ChhHHHH----HHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHH
Q 000098 1447 MMSQLSAQG----VKLVLPSLLKGLEDK-AWRTKQS----SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517 (2256)
Q Consensus 1447 l~~~l~~~~----v~~ilp~Ll~~L~~~-~w~~R~~----a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~ 1517 (2256)
+...-+... ...++..+.+.-.+. +...-.+ -..+...++...++..-..+|.+++.++.++...++++-.
T Consensus 251 lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q 330 (1176)
T KOG1248|consen 251 LFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQ 330 (1176)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHH
Confidence 987665521 133444444433221 1111100 1122223333334444456778888888888888889988
Q ss_pred HHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1518 AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1518 aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
++.+++..+.+.... +.+.+... .+..++.-+...+-+.+.
T Consensus 331 ~a~q~l~~il~~sv~-----~~~~~c~~----------------------------------~~~~~l~~kf~~~~~~il 371 (1176)
T KOG1248|consen 331 AASQSLKEILKESVT-----VIDALCSK----------------------------------QLHSLLDYKFHAVWRFIL 371 (1176)
T ss_pred HHHHHHHHHhcccCc-----ccHHHHHH----------------------------------HHHHHHcchHHHHHHHHH
Confidence 888888887754321 11111110 112222222334555566
Q ss_pred HHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHH
Q 000098 1598 QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677 (2256)
Q Consensus 1598 ~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~ 1677 (2256)
+++..+++.++. ...|++-..+..+-..=.+++..-+...-.|+|+.+.++|++.+=.++|.=+ ..+.....|
T Consensus 372 qi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~~~s~~~~R-- 444 (1176)
T KOG1248|consen 372 QILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL---HAESLSFTR-- 444 (1176)
T ss_pred HHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc---cccccccch--
Confidence 677777775544 3345555555555444445555566677889999999999875555555332 111111111
Q ss_pred HHHHHHHHHHHh--c--HhHH-HHHHHHHHHh------ccCC---CHHHHHHHHHHHHHhHhhh--ChhHHHHHHHHHHH
Q 000098 1678 AAQGLSEVLAAL--G--TVYF-EHILPDIIRN------CSHQ---RASVRDGYLTLFKYLPRSL--GVQFQNYLQQVLPA 1741 (2256)
Q Consensus 1678 aa~~L~~i~~~~--g--~~~l-~~ll~~ll~~------l~~~---~~~vR~~al~~l~~La~~~--g~~f~~yl~~ilp~ 1741 (2256)
++-| -+++.. | -.++ +.++|...+. +... ....+....++|+-++... +.+...-+..+.|.
T Consensus 445 -sWLL-PvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~ 522 (1176)
T KOG1248|consen 445 -SWLL-PVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPI 522 (1176)
T ss_pred -hHhH-HHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHH
Confidence 1111 111111 1 1111 3333333222 1111 1134445556666665543 23444445667777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhhc------------cchhchHHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 000098 1742 ILDGLADENESVRDAALGAGHVLVEHYAT------------TSLPLLLPAVEDGIFN------DNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1742 Ll~~L~d~~~~VR~~Al~al~~iv~~~~~------------~~~~~llp~L~~~l~d------~~~~iR~~sv~llg~ll 1803 (2256)
+...+... ++.|...+.++..+++.-.+ .....++|.+.+.-.. ..-+.|..-++.+-...
T Consensus 523 l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~ 601 (1176)
T KOG1248|consen 523 LGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDY 601 (1176)
T ss_pred HHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHH
Confidence 77777654 48899999999888764210 0112244444332211 11122222222222111
Q ss_pred HhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHH----HHHHHHHHHHHHHhcCh-hH
Q 000098 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS----VRQAALHVWKTIVANTP-KT 1878 (2256)
Q Consensus 1804 ~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~----Vr~aA~~~l~~l~~~~~-~~ 1878 (2256)
++.. .......+.+.+| ....|.+.. .+..-+..+..++...+ ..
T Consensus 602 ~~~t------------------~~dv~~~l~~s~~------------e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~ 651 (1176)
T KOG1248|consen 602 FTVT------------------PTDVVGSLKDSAG------------ELASDLDESVASFKTLSLLDLLIALAPVQTESQ 651 (1176)
T ss_pred hhcc------------------cHHHHHHHHHHHH------------hHhccchhhhhhHHHHHHHHHHHhhhccccchh
Confidence 1100 0000011111111 111122111 11222233333333222 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-----hCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHh
Q 000098 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK-----LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1879 l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~-----~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~ 1953 (2256)
+..+. ++.+. ..++.+..+|.-+.+-|..++.. +.......+...|.+.+++.....|...+.++..++..
T Consensus 652 vs~l~-~v~~~---~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 652 VSKLF-TVDPE---FENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL 727 (1176)
T ss_pred HHHHH-HhhHH---hhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 22222 22222 22455788899999999998876 12223455566666666666677888899999999888
Q ss_pred hChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhc
Q 000098 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT 2033 (2256)
Q Consensus 1954 ~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~ 2033 (2256)
++.+ ...+....++.+.-.+.+.+..-|+.|..++-.+... -.-+++.++. +-
T Consensus 728 ~~~e-~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i-------------~~~~d~g~e~--~~----------- 780 (1176)
T KOG1248|consen 728 LSAE-HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAI-------------QSSLDDGNEP--AS----------- 780 (1176)
T ss_pred ccHH-HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHH-------------Hhhhcccccc--hH-----------
Confidence 8743 3345566666666666788888888776665555420 0001111110 00
Q ss_pred ccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh----cchhc
Q 000098 2034 TAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV----IDEEG 2109 (2256)
Q Consensus 2034 ~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~----~~~~~ 2109 (2256)
..+.+|+..| ...+..+..-++..-+-++..++.. ++.+.
T Consensus 781 --------------------------------~~lnefl~~I----sagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~ 824 (1176)
T KOG1248|consen 781 --------------------------------AILNEFLSII----SAGLVGDSTRVVASDIVAITHILQEFKNILDDET 824 (1176)
T ss_pred --------------------------------HHHHHHHHHH----HhhhcccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 0111122222 2222222222222224455555542 35577
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchh-hhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCc
Q 000098 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL-YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV 2188 (2256)
Q Consensus 2110 ~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~-~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~ 2188 (2256)
++.+++.+..++.+.++.+|.+|+.++..++...+. -+.+|.+.+++.++.+..|-...+|..+-.-|-.++.+.+.+.
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 889999999999999999999999999999987664 4788999999999999999999999999999999999999888
Q ss_pred hhchHHHHH-HHHhhhh
Q 000098 2189 QPSYIKVIR-DAISTSR 2204 (2256)
Q Consensus 2189 l~~lv~~l~-~~l~~~~ 2204 (2256)
+..+.|... +.|...|
T Consensus 905 Le~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 905 LESFLPEEDMKLLTNIR 921 (1176)
T ss_pred HHhhCHHHHHHHHHHHH
Confidence 888877643 3444433
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.45 E-value=2.8e-10 Score=153.10 Aligned_cols=478 Identities=18% Similarity=0.201 Sum_probs=322.0
Q ss_pred hhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1451 LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1451 l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
..++.+...++.+++.+.+++...|+.+...+..+....++.+ .-++..+.+-+.++++.+|..|.+++..++
T Consensus 35 ~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~----~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--- 107 (526)
T PF01602_consen 35 MLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL----ILIINSLQKDLNSPNPYIRGLALRTLSNIR--- 107 (526)
T ss_dssp HTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH----HHHHHHHHHHHCSSSHHHHHHHHHHHHHH----
T ss_pred HcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH----HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---
Confidence 4456677889999999999999999999988888887777632 246677777899999999999999999887
Q ss_pred Cchh-HHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhh-HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1531 KNPE-IASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLAL-LVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1531 ~~~~-i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~-i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
+++ .+.+++.+.+.+.|+++.+|. |+.++...-.. ++..... +++.+.+.+.|.++.++..|+.++..+ +
T Consensus 108 -~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~-- 180 (526)
T PF01602_consen 108 -TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K-- 180 (526)
T ss_dssp -SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H--
T ss_pred -ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c--
Confidence 454 488999999999999999984 55555441111 1122223 789999999999999999998888887 2
Q ss_pred CCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCch--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF--PDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2256)
Q Consensus 1608 ~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~--~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i 1685 (2256)
..+.......+.+.+.+.+.+.+++|..+..+++.+..++..-. ... ..+++.+...+.+ .+..+...++..+..+
T Consensus 181 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-~~~~~~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 181 CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-EDADKNRIIEPLLNLLQS-SSPSVVYEAIRLIIKL 258 (526)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-hhhhHHHHHHHHHHHhhc-cccHHHHHHHHHHHHh
Confidence 12111124566677777777789999999888888876553211 122 3577777777774 3333444444444322
Q ss_pred HHHhcHh-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1686 LAALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1686 ~~~~g~~-~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
.... ....+++.+...+.++++.+|-.++.++..++....+ ++......+.....+++..+|..+++.+..+
T Consensus 259 ---~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~----~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 259 ---SPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP----AVFNQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp ---SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH----HHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred ---hcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch----hhhhhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 2222 4677888999999999999999999999988876522 2222222233334488899999988887777
Q ss_pred HHHhhccchhchHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhH
Q 000098 1765 VEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2256)
Q Consensus 1765 v~~~~~~~~~~llp~L~~~l~d-~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~ 1843 (2256)
+.. ..+..+++.+.+.+.+ .+..+|..++..++.+....++ ..+
T Consensus 332 ~~~---~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~--------------------------------~~~ 376 (526)
T PF01602_consen 332 ANE---SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP--------------------------------DAE 376 (526)
T ss_dssp --H---HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS--------------------------------SHH
T ss_pred ccc---cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc--------------------------------hHH
Confidence 643 3455678888887743 3666899999999888643211 011
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCc-cchh
Q 000098 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLP 1922 (2256)
Q Consensus 1844 ~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~-~~l~ 1922 (2256)
..+..+..........+...+...+..+..+.|..-...+..++..+. .-.++..+..+++.+|+.+..... ...+
T Consensus 377 ~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~---~~~~~~~~~~~~wilGEy~~~~~~~~~~~ 453 (526)
T PF01602_consen 377 WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLE---DISSPEALAAAIWILGEYGELIENTESAP 453 (526)
T ss_dssp HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT---SSSSHHHHHHHHHHHHHHCHHHTTTTHHH
T ss_pred HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH---HhhHHHHHHHHHhhhcccCCcccccccHH
Confidence 222333333333333455556666666776666655556666655553 245678899999999999887765 3456
Q ss_pred chHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000098 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTL 1992 (2256)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~--D~~~~VR~~A~~al~~l 1992 (2256)
.++..+.+.+.+.++.+|..+..++..+....+.... .+.+.+.+..... +.+.+||+.|..-+.-+
T Consensus 454 ~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~---~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 454 DILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV---QNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH---HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 6677777777777788999998888888766543222 2356777777776 78999999987655433
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=7e-10 Score=149.31 Aligned_cols=496 Identities=17% Similarity=0.189 Sum_probs=331.1
Q ss_pred CHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcc-hHHHHHHHHH
Q 000098 1229 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVDKLLD 1307 (2256)
Q Consensus 1229 ~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~-i~~il~~Ll~ 1307 (2256)
+..-+..++.-...... .|.+ ++.+.+.+-+++.. ++ . ..|..+-..+..+.. .++. +.-++..+..
T Consensus 19 ~~~~~~~~l~kli~~~~-~G~~-~~~~~~~vi~l~~s--~~--~--~~Krl~yl~l~~~~~----~~~~~~~l~~n~l~k 86 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMM-LGYD-ISFLFMEVIKLISS--KD--L--ELKRLGYLYLSLYLH----EDPELLILIINSLQK 86 (526)
T ss_dssp HHHHHHHHHHHHHHHHH-TT----GSTHHHHHCTCSS--SS--H--HHHHHHHHHHHHHTT----TSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCC-CchHHHHHHHHhCC--CC--H--HHHHHHHHHHHHHhh----cchhHHHHHHHHHHH
Confidence 55445444433332222 3332 34455544444332 11 1 345544444444332 2333 4446777888
Q ss_pred HcCCCCHHHHHHHHHhhHHhHHhhcCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHH
Q 000098 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386 (2256)
Q Consensus 1308 ~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~ 1386 (2256)
.|.++++.+|..+..+++.+. .++. +.+++.+ ..+..++++.+|+.|+.++..+.+.. ++..... +++.+.+.
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v-~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~-~~~~l~~l 160 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDV-IKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDE-LIPKLKQL 160 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHH-HHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGG-HHHHHHHH
T ss_pred hhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHH-HHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHH-HHHHHhhh
Confidence 999999999988888887765 2222 3334434 44556777999999999999999874 3444322 68888888
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHH
Q 000098 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLK 1465 (2256)
Q Consensus 1387 l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~ 1465 (2256)
+.+. ++.++..|+.++..+ +..++.+.+.+..+...+...+++.++.++....+.+..+........- ..+++.+..
T Consensus 161 L~d~-~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~ 238 (526)
T PF01602_consen 161 LSDK-DPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN 238 (526)
T ss_dssp TTHS-SHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH
T ss_pred ccCC-cchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH
Confidence 8665 799999998888888 2222222245666667777777999999988887777766543322221 468888888
Q ss_pred hccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhh
Q 000098 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2256)
Q Consensus 1466 ~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~ 1545 (2256)
.+.+.++.+...++.++..+....+ .+..+++.+..++.++++.+|..+..+|..++... .+.+......+...
T Consensus 239 ~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v~~~~~~~~~l 312 (526)
T PF01602_consen 239 LLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAVFNQSLILFFL 312 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHHGTHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhhhhhhhhhhee
Confidence 8888888888888877775543221 45678899999999999999999999999998764 23333222233334
Q ss_pred hCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHH
Q 000098 1546 LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 1623 (2256)
Q Consensus 1546 l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~ 1623 (2256)
..+++..+| .+++.+... .+......+++.+...+.+. +.+.|..+...++.++... +.+ .+..+..
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l-----~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~--~~~----~~~~v~~ 381 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKL-----ANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF--PPD----AEWYVDT 381 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH--GSS----HHHHHHH
T ss_pred cCCCChhHHHHHHHHHhhc-----ccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc--Cch----HHHHHHH
Confidence 446777776 466666542 12345667888888888544 7789999999999999753 223 3345667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH-hHHHHHHHHHH
Q 000098 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDII 1702 (2256)
Q Consensus 1624 L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~-~~l~~ll~~ll 1702 (2256)
+.+++......+...+...+..+.... ++.....+..+.+.+.+-..+..+..+++.+|+....... .....++..+.
T Consensus 382 l~~ll~~~~~~~~~~~~~~i~~ll~~~-~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~ 460 (526)
T PF01602_consen 382 LLKLLEISGDYVSNEIINVIRDLLSNN-PELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLI 460 (526)
T ss_dssp HHHHHHCTGGGCHCHHHHHHHHHHHHS-TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHH
T ss_pred HHHhhhhccccccchHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHH
Confidence 777777777778888888888877653 3345678899999888877777888888889998877654 24556677777
Q ss_pred HhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 000098 1703 RNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA--DENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1703 ~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~--d~~~~VR~~Al~al~~i 1764 (2256)
......+..+|...+.++.-+....+..- ..+.+.+.+.+... +.+.+||+.|..-+..+
T Consensus 461 ~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 461 ENFIEESPEVKLQILTALAKLFKRNPENE--VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHhhCCchh--hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 77777788899999999988887766421 22467777777777 77999999887765543
No 31
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.3e-06 Score=115.25 Aligned_cols=769 Identities=17% Similarity=0.196 Sum_probs=407.1
Q ss_pred HHHHHHHccccc--hHHHHHHHHHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhh
Q 000098 1027 SVLYHVLGVVPS--YQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWI 1104 (2256)
Q Consensus 1027 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1104 (2256)
.+|-.++...|+ +++...+.++-+...++ .-+.+..|+..+.-.|..+.+
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~----------~~stn~svlr~~iscL~~lLr------------------ 124 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLT----------AESTNGSVLRLAISCLEDLLR------------------ 124 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh----------hhcccchHHHHHHHHHHHHHH------------------
Confidence 344455555565 44444444443333222 235677788877777764431
Q ss_pred hccCCcHHHHHHHHHHHhhcCCCCCCChHhHHHhhcCCCHHHHHHHHHHHHHHHHhCC---Cc----HHHHHHHHHHHHH
Q 000098 1105 AVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYP---DS----IQGSLSTLFSLYI 1177 (2256)
Q Consensus 1105 a~~d~~~~~~~~~~~~w~~~~~~~~~~~~~ll~~l~~~~~~vR~~aa~ala~~~~~~~---~~----~~~~l~~L~~~~~ 1177 (2256)
+ +|. .-|. .....+.+..++.+..|+.+.+|..+.++++.++...| +. ...+.........
T Consensus 125 a-Qd~---------~aW~--~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e 192 (1176)
T KOG1248|consen 125 A-QDA---------SAWS--YSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIE 192 (1176)
T ss_pred H-cch---------hhhc--cccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHH
Confidence 2 111 1455 21222334677788889999999999999999987432 11 1112222222221
Q ss_pred hhcCCCCCCCCCCcchhHHHHHHHHHh---hhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccc
Q 000098 1178 RDIGLGGDNVDAGWLGRQGIALALHSA---ADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254 (2256)
Q Consensus 1178 ~~~~~~~~~~~~~~~~R~~~~~aL~~l---~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~ 1254 (2256)
..+.+ ..-..+...|.-+ ...|+...+..+-+.++ ..++..+..|+..++.|+......+...--..
T Consensus 193 ~~~~~---------a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL-~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~ 262 (1176)
T KOG1248|consen 193 SKLGS---------AENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLL-NITTESPVLVLLEVLQCLHSLFKKHPTALAAE 262 (1176)
T ss_pred hhhch---------HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 11110 0112223333332 22233344444444442 46777888999999999887776654311112
Q ss_pred hHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHh---hhccC-----CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHH
Q 000098 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK---HLAKD-----DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSP 1326 (2256)
Q Consensus 1255 Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~---~l~~~-----~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~ 1326 (2256)
+.-.+...+....+. +.++.. .+.++..+.+ ++... ...+..++..++..+..+.+++-.++..|+..
T Consensus 263 ~~a~lL~al~~l~ps-~~D~~~---t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~ 338 (1176)
T KOG1248|consen 263 LNARLLTALMTLSPS-ENDDLL---TVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKE 338 (1176)
T ss_pred HHHHHHHHHHHhCCC-ccchHH---HHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHH
Confidence 222233333332222 121111 2222222221 11111 12234445555555556677776777788766
Q ss_pred hHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH--hCCCCHHHHHHHHHHHH
Q 000098 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL--ADRNSAKRREGALLAFE 1404 (2256)
Q Consensus 1327 lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l--~~~~~~~~Re~al~al~ 1404 (2256)
+....-.-.+..-..-++.+.+-.-..+-+.+.+.+..+...+|..... .+.+.|.... ....+...+..--.++|
T Consensus 339 il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~--~l~~~L~~l~~lr~~~d~~~~~~ld~~IG 416 (1176)
T KOG1248|consen 339 ILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGP--ELTKTLEGLCDLRASPDFFHKLQLDQCIG 416 (1176)
T ss_pred HhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCH--HHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 6543211111222223445555444556677888888888888864332 3444443221 11112223334445555
Q ss_pred HHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH----hhHHhHHHHHHH------hccCCChhH
Q 000098 1405 CLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----QGVKLVLPSLLK------GLEDKAWRT 1474 (2256)
Q Consensus 1405 ~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~----~~v~~ilp~Ll~------~L~~~~w~~ 1474 (2256)
.-...+|. ..+-.++|.=+ ..+.....| .|.+-.+=.+... .-...++|.... .+.+..-..
T Consensus 417 SAV~AmGP---e~vL~~lpLnl--~~~s~~~~R---sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~ 488 (1176)
T KOG1248|consen 417 SAVRAMGP---ERVLTILPLNL--HAESLSFTR---SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQV 488 (1176)
T ss_pred HHHHhhCH---HHHHHHcchhc--cccccccch---hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcH
Confidence 55555552 22344555443 112111111 1222111111111 111333333322 111111111
Q ss_pred H---HHHHH---HHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch------------hHH
Q 000098 1475 K---QSSVQ---LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP------------EIA 1536 (2256)
Q Consensus 1475 R---~~a~~---~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~------------~i~ 1536 (2256)
+ .-..+ +|..+|+ .|-++...+..+.|.+...+.-. ++.|...|.+|..+.+...++ +-.
T Consensus 489 ~~~~tl~~QLW~LLP~FC~-~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~Ak 566 (1176)
T KOG1248|consen 489 SLYDTLVDQLWSLLPGFCN-YPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAK 566 (1176)
T ss_pred HHHHHHHHHHHHhChhhhC-CCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhh
Confidence 1 11111 1222221 36667777888888888877765 499999999999888764210 012
Q ss_pred hHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh
Q 000098 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2256)
Q Consensus 1537 ~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~ 1616 (2256)
.++|.+......+....+ +. ...|.....++.+..-.. .+.++
T Consensus 567 nfL~~lfn~ytq~~~~~~-----------------~~----------------l~~~~~~L~~i~~~~~~~-t~~dv--- 609 (1176)
T KOG1248|consen 567 NFLPRLFNVYTQTVAAGR-----------------KI----------------LASRSTVLEIIRVDYFTV-TPTDV--- 609 (1176)
T ss_pred HHHHHHHHHhcCCCcccc-----------------cc----------------HHHHHHHHHHHHHHHhhc-ccHHH---
Confidence 333333333222111000 00 111222112221111000 11111
Q ss_pred hhhhhHHHHHhhcCCCHHH----HHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH----
Q 000098 1617 IGLLLPEVKKVLVDPIPEV----RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA---- 1688 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d~~~~V----R~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~---- 1688 (2256)
...+...+.....+.+..+ +.....-+..++....+++...+. .+.....+..+..++..+..-|.+++..
T Consensus 610 ~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~ 688 (1176)
T KOG1248|consen 610 VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGE 688 (1176)
T ss_pred HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchh
Confidence 1112222222222322222 222233333333333333333333 2333333334556777777777777765
Q ss_pred -hcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--
Q 000098 1689 -LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV-- 1765 (2256)
Q Consensus 1689 -~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv-- 1765 (2256)
+-.+..+.+...+...+++.....|...+.++..+-...+.++..++...+|.++-.+++.+..-|..+...+..|.
T Consensus 689 ~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i 768 (1176)
T KOG1248|consen 689 GLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAI 768 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHH
Confidence 22335566677777777778888999999999999999998778888888888877778888999999988887776
Q ss_pred HHhhc-------cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhc
Q 000098 1766 EHYAT-------TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838 (2256)
Q Consensus 1766 ~~~~~-------~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg 1838 (2256)
..+-. ..+..+++.+..++..+..+++.+.+-.++.+++. ....++
T Consensus 769 ~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---------------------------~~~~ld 821 (1176)
T KOG1248|consen 769 QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---------------------------FKNILD 821 (1176)
T ss_pred HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---------------------------Hhcccc
Confidence 33322 13455777777777776667666656666666532 223344
Q ss_pred chhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1917 (2256)
Q Consensus 1839 ~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~-~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~ 1917 (2256)
.+....++..++.++.....+++.+|+..++.++...|. .+.+++|.+++.+.....+....+|...-.-|..+++++|
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 445566777777778888899999999999999998884 6788999999999887777788889999999999999999
Q ss_pred ccchhchHH
Q 000098 1918 ERVLPSIIP 1926 (2256)
Q Consensus 1918 ~~~l~~llp 1926 (2256)
...+..++|
T Consensus 902 ~~eLe~~~p 910 (1176)
T KOG1248|consen 902 AEELESFLP 910 (1176)
T ss_pred HHHHHhhCH
Confidence 876666665
No 32
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3e-07 Score=119.55 Aligned_cols=494 Identities=15% Similarity=0.185 Sum_probs=279.5
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh--Ccccc
Q 000098 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF--GISSL 1374 (2256)
Q Consensus 1298 i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~--g~~~~ 1374 (2256)
++.+++.|+.++++.+..||..+++.++.+........ .+.+...++.+.-.++...-+||+.+|++++..- -+..+
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 45677888889999999999999999888877664332 3445555553333345677889999999998632 12222
Q ss_pred hhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHH-HcCCCcHHHHHHHHHHHH
Q 000098 1375 KKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLV-AFSDQVVAVREAAECAAR 1445 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~-------~~~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~-~l~D~~~~VR~aa~~al~ 1445 (2256)
.+++|.+.+.+. .....++|++|++++-+++.... ..+.|++..+.+.++. .+-|++-++|.+|..|+.
T Consensus 419 --~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 419 --EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred --HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 268888877653 12346899999999999988765 5689999988887764 688999999999988887
Q ss_pred HHHhhhhH--hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh-hcCCCHHHHHHHHHH
Q 000098 1446 AMMSQLSA--QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-LTDTHPKVQSAGQTA 1522 (2256)
Q Consensus 1446 ~l~~~l~~--~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~-L~D~~~~VR~aA~~a 1522 (2256)
..+...+. +|++-+ ...+.-+-..|..+...+....... ..+...++..++.- +.+=++.+|..++++
T Consensus 497 E~VGR~~n~p~Gi~Li-----s~~dy~sV~~rsNcy~~l~~~ia~~----~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLI-----STIDYFSVTNRSNCYLDLCVSIAEF----SGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred HHhccCCCCCCchhhh-----hhcchhhhhhhhhHHHHHhHHHHhh----hhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 76654332 232211 0111001111222222222211112 22223344444333 667778999999999
Q ss_pred HHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH----HH----HHHHhccc-ccCCChhhHhh---HHHHHHHhhcCC--
Q 000098 1523 LQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SL----DILLQTTF-VNTVDAPSLAL---LVPIVHRGLRER-- 1588 (2256)
Q Consensus 1523 L~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~----al----~~L~~~~~-~~~~~~~~l~~---i~p~L~~~L~d~-- 1588 (2256)
|..+...-........+|.+++....++...|. +. ..+..... ....+...++. ++|.+...-..+
T Consensus 568 L~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~ 647 (1133)
T KOG1943|consen 568 LHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQ 647 (1133)
T ss_pred HHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccch
Confidence 999876532212245666666666555554442 11 11111110 00111111222 222222111111
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh--CcCchH-HHHHHHHH
Q 000098 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM--GEENFP-DLVSWLLD 1664 (2256)
Q Consensus 1589 ~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~--g~~~~~-~lip~Ll~ 1664 (2256)
..-.|...+..+..+.. .+......+ .......+.+.+.+++ .+|..+..+++.++... +++... +++...+.
T Consensus 648 ~~lmr~~~~~~Ie~~s~--s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls 724 (1133)
T KOG1943|consen 648 GTLMRQATLKFIEQLSL--SKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLS 724 (1133)
T ss_pred HHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHH
Confidence 23455666666665543 121111111 1111222333334555 89999999999998743 333333 47777777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhcHhHH-HHHHHHHHHhccC-CCHHHHHHHHHHHHHhHhhhCh-hHHHHHHHHHHH
Q 000098 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPA 1741 (2256)
Q Consensus 1665 ~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-~~ll~~ll~~l~~-~~~~vR~~al~~l~~La~~~g~-~f~~yl~~ilp~ 1741 (2256)
.+.+..+..+|.+...+++.+....-.-.+ +.+...++..... ..+.-|...+.++..++.+.+. .|..-.++++..
T Consensus 725 ~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~ 804 (1133)
T KOG1943|consen 725 RLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRET 804 (1133)
T ss_pred HhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 777766666788777666554432211122 2232333332222 2677888888888888877762 233334555555
Q ss_pred HHHhcCC----C----CHHHHHHHHHHHHHHHHHhhc-cc-----hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1742 ILDGLAD----E----NESVRDAALGAGHVLVEHYAT-TS-----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1742 Ll~~L~d----~----~~~VR~~Al~al~~iv~~~~~-~~-----~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
+++++.| . ...||++|++++..+...... .. +..++-.+.+.-.++-.+.|.-++.++..+.++
T Consensus 805 LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 805 LLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 6666554 3 246899999999887765542 21 122233333344455567787777777777654
No 33
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.5e-07 Score=117.21 Aligned_cols=636 Identities=15% Similarity=0.178 Sum_probs=353.1
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH---------HHhhcC-
Q 000098 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED---------IWDRYG- 1125 (2256)
Q Consensus 1056 ~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~---------~w~~~~- 1125 (2256)
.+++.+.+.++++||+.+|++||++|.+.... |.. +...+-++..|+.+.+.+.+.. -|....
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pgF--v~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~ 75 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PGF--VSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEA 75 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----CcH--HHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCC
Confidence 46788899999999999999999999977532 322 3445556666776666444333 455441
Q ss_pred ----CCCCC----Ch-HhHHHhhcCCCHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhH
Q 000098 1126 ----YDFGT----DY-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 1195 (2256)
Q Consensus 1126 ----~~~~~----~~-~~ll~~l~~~~~~vR~~aa~ala~~~-~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~ 1195 (2256)
..+.+ .+ +.+++++.+....+|..-...+..+. +.+|+.|+.++.......+ ......=.
T Consensus 76 ~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lq----------s~~~~~vy 145 (1010)
T KOG1991|consen 76 PGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQ----------SQDANHVY 145 (1010)
T ss_pred CCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhc----------CcchhhHH
Confidence 11221 13 67888888889999999998886665 4688999998888776422 12222336
Q ss_pred HHHHHHHHhhhhhc---cC---ChhHhHHHHH-------HhhcCCCCHHHH---HHHHHHHHHHHHhh------cccccc
Q 000098 1196 GIALALHSAADVLR---TK---DLPVIMTFLI-------SRALADTNADVR---GRMLNAGIMIIDKH------GRDNVS 1253 (2256)
Q Consensus 1196 ~~~~aL~~l~~~~~---~~---~~~~l~~~lv-------~~~l~D~~~~VR---~~a~~a~~~~i~~~------g~~~~~ 1253 (2256)
|+..+++.++...+ ++ .+..+++.+. ...+.+.+...- ...+......+... .++.+.
T Consensus 146 ~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~ 225 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFT 225 (1010)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHH
Confidence 78888888877533 11 1222222221 123334433322 22222222222211 122333
Q ss_pred chHHHHHHHhhccCCChh-----------hhhhhhhHHHHHHHHHHhhhccC-C--cc------------hHHHHHHHHH
Q 000098 1254 LLFPIFENYLNKKASDEE-----------KYDLVREGVVIFTGALAKHLAKD-D--PK------------VHAVVDKLLD 1307 (2256)
Q Consensus 1254 ~Ll~~l~~~L~~~~~~~~-----------~~~~vr~~av~~L~~La~~l~~~-~--~~------------i~~il~~Ll~ 1307 (2256)
.-+..+...++.+-+.+. ..-..+.=|.-.|..+++...+. . ++ ...+++.+++
T Consensus 226 ~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk 305 (1010)
T KOG1991|consen 226 SWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLK 305 (1010)
T ss_pred HHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443222110 11113334555555555433221 1 11 1112222222
Q ss_pred HcC---C---CCHHHHHHHH----Hhh--HHhHHhhcCchH--------------------------HHHHHHHHHHhcC
Q 000098 1308 VLN---T---PSEAVQRAVS----SCL--SPLMQSMQDEAP--------------------------TLVSRLLDQLMKS 1349 (2256)
Q Consensus 1308 ~L~---~---~~~~Vq~~~~----~~L--~~lv~~~~~~~~--------------------------~~l~~Ll~~L~~~ 1349 (2256)
.+. . -++.|-.-+. .|. ....+.++++.. ++++.-++..-+.
T Consensus 306 ~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~ 385 (1010)
T KOG1991|consen 306 ILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDG 385 (1010)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhccc
Confidence 111 1 0111111110 110 000111112221 2222211111111
Q ss_pred CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhcc--CchHhHHH
Q 000098 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVIQ 1420 (2256)
Q Consensus 1350 ~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~-------~~~~~~~Re~al~al~~L~~~l~~--~~~pyv~~ 1420 (2256)
+.-+.+|...+-.+++..|.+.+. .+++++.+.+. +.++++..+||+.+++.+++.+.+ .+..-+..
T Consensus 386 --~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~ 461 (1010)
T KOG1991|consen 386 --YSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY 461 (1010)
T ss_pred --CCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH
Confidence 112347778888888888888775 78888887765 356889999999999999988753 22333333
Q ss_pred -HHHHHHHHcCCCcHHHHHHHHHHHHHHH-hhhhHhh-HHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhCh---hhH
Q 000098 1421 -MLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQL 1493 (2256)
Q Consensus 1421 -llp~ll~~l~D~~~~VR~aa~~al~~l~-~~l~~~~-v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p---~~l 1493 (2256)
++++++..+.++.-..|..|++.+..+. -.++..+ ....+.....++. |.+.-+|..|+.+|..+....+ +.+
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 5678888899999999999999999887 3344443 3667777777777 7888899999999999998876 448
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHH-HHHHhhcCc--hhH-HhHHHHHHhhhCC---CChhHH----HHHHHHHh
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLMGLTD---PNDHTK----YSLDILLQ 1562 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL-~~l~~~i~~--~~i-~~lv~~Ll~~l~d---~~~~vr----~al~~L~~ 1562 (2256)
++++|.++..++.+.++.+.+.-....+.+ ..+++.+.+ .++ +.+...+++++.+ .++... .|+..|..
T Consensus 542 ~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 899999999999999887766655554433 455554432 122 6677777777764 111111 12222211
Q ss_pred -------cccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHH
Q 000098 1563 -------TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2256)
Q Consensus 1563 -------~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~V 1635 (2256)
......+....-+.+.|++...+...-.+.-..++.++..+.-. .+++.|-+-++++.+.+++.+.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~mW~ll~li~e~~~~~---- 694 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIMWGLLELILEVFQDD---- 694 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHHHHHHHHHHHHHhhh----
Confidence 00111111112234455555555554445555555554444321 1334454445555555554442
Q ss_pred HHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC--CCHHHH
Q 000098 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVR 1713 (2256)
Q Consensus 1636 R~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~--~~~~vR 1713 (2256)
|-+|+++++|.+-+.+.-+... ... ...+...+...+.+.+++ ....-.
T Consensus 695 ---------------~~dyf~d~~~~l~N~vt~g~~~-~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~ 745 (1010)
T KOG1991|consen 695 ---------------GIDYFTDMMPALHNYVTYGTPS-LLS-------------NPDYLQILLEIIKKVLTSENGEDSDC 745 (1010)
T ss_pred ---------------hHHHHHHHHHHHhhheeeCchh-hhc-------------cchHHHHHHHHHHHHHcCCCCchHHH
Confidence 2357888888887666543321 000 012333344444444444 244556
Q ss_pred HHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCC
Q 000098 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2256)
Q Consensus 1714 ~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d 1748 (2256)
..++..+..+...++.....|++.++...+..+..
T Consensus 746 ~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 746 ESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 67788888888877777777877777777777766
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=99.34 E-value=1.7e-07 Score=125.00 Aligned_cols=468 Identities=13% Similarity=0.094 Sum_probs=300.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~ 1457 (2256)
.+.+.+.+++..+ +...|.-....+...++.- .....-.++.+.+.+.|+++.+|-.|..++..+. .+.-++
T Consensus 68 ~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~----pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e 139 (746)
T PTZ00429 68 YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQ----PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLE 139 (746)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccC----hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHH
Confidence 3555666677665 7788876655444443321 2224456788888999999999998877766542 334457
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch--hH
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI 1535 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i 1535 (2256)
.+++.+.+.+.|.+..+|+.|+.++..+....|+.+.. ..+++.+.+++.|+++.|..+|..+|..+.+..++. ..
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~ 217 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS 217 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH
Confidence 78888899999999999999999999998877765322 256777888899999999999999999997654332 12
Q ss_pred HhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
...+..++..+.+-++..+ ..++.+.. +.+ .+......++..+...+++.++.|...|+.++-.+.... ++..+.
T Consensus 218 ~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P-~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~ 293 (746)
T PTZ00429 218 NEWVNRLVYHLPECNEWGQLYILELLAA--QRP-SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIE 293 (746)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHh--cCC-CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHH
Confidence 4555666666665555443 34555543 222 122334567777888888999999999888887776422 111122
Q ss_pred hhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH
Q 000098 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2256)
.....+.+.+..+ ....+++|..+.+.+..++.... ..+..-+..++-.. +|+.+ +|......+..+ ...+..
T Consensus 294 ~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~~-~Dp~y-IK~~KLeIL~~L---ane~Nv 366 (746)
T PTZ00429 294 RCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVRY-SDPPF-VKLEKLRLLLKL---VTPSVA 366 (746)
T ss_pred HHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhccc-CCcHH-HHHHHHHHHHHH---cCcccH
Confidence 2233333444444 45678999999999988886432 22222222222222 23333 555555554444 345566
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchh
Q 000098 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~ 1774 (2256)
..++..+...+.+.+...+..++.++|.++..+.. ..+.++..+++.+.+..+.+. .++..++.|++.|....
T Consensus 367 ~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~~-- 439 (746)
T PTZ00429 367 PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPELL-- 439 (746)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccHH--
Confidence 77888888888889999999999999999977654 445666777777766544443 46777888887776432
Q ss_pred chHHHHHhhc--CC-CCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH
Q 000098 1775 LLLPAVEDGI--FN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2256)
Q Consensus 1775 ~llp~L~~~l--~d-~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2256)
+++.+.+.. .+ .+...|.+.+-.+|+....+ +. -.+++..+..
T Consensus 440 -il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I--------------------~~-------------a~~~L~~~i~ 485 (746)
T PTZ00429 440 -MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI--------------------EN-------------GKDIIQRFID 485 (746)
T ss_pred -HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH--------------------hh-------------HHHHHHHHHh
Confidence 445555432 11 34556777777777764211 00 0123333333
Q ss_pred HhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000098 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRAL 1909 (2256)
Q Consensus 1852 ~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL 1909 (2256)
...+....||-+.+.+...+.-..|...++.+..++.... -.+.++++|..|..-.
T Consensus 486 ~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t--~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 486 TIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVT--THSDDPDVRDRAFAYW 541 (746)
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--hcCCChhHHHHHHHHH
Confidence 3445567788888887777777777666665655554432 1356788998876543
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.33 E-value=1.3e-07 Score=126.29 Aligned_cols=496 Identities=12% Similarity=0.071 Sum_probs=313.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcc-hHHH
Q 000098 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAV 1301 (2256)
Q Consensus 1223 ~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~-i~~i 1301 (2256)
+.|.+++..-|..++......+.. |. .+..+++-+-+++... +-.+|.-+...+...++. .|. .--.
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~-G~-DvS~LF~dVvk~~~S~------d~elKKLvYLYL~~ya~~----~pelalLa 106 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTM-GR-DVSYLFVDVVKLAPST------DLELKKLVYLYVLSTARL----QPEKALLA 106 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHC-CC-CchHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccc----ChHHHHHH
Confidence 345566666666666655555543 33 3556666666665431 125666666666555542 333 2345
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHH
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~ 1381 (2256)
+..+.+.+.++++.+|-.+.+++..+. .+..-+++...+.....+.++-||+.|+.|+..+.+..+ +......+.+
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~ 182 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKK 182 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHH
Confidence 678888999999999987766655432 223334444444555567789999999999999987554 3332335677
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH--hhHHhH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLV 1459 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~--~~v~~i 1459 (2256)
.+.+.+.|. ++.+.-.|+.++..+.+..++.+. .....+..++..+.+-++.-+-...+.+ ....+. .....+
T Consensus 183 ~L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~i 257 (746)
T PTZ00429 183 DLVELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETL 257 (746)
T ss_pred HHHHHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHH
Confidence 888877655 899998999988888876554332 2333445556666665665555444444 332222 234678
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~-p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
+..+...+.+.+.-+-.+|+.++-.+.... ++.....+..+.+.++.+ ..+++++|..+...+..+....+ ..+...
T Consensus 258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~ 335 (746)
T PTZ00429 258 LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTN 335 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHH
Confidence 888888888888888888888887776543 233333344454555555 45678999999999988887542 233444
Q ss_pred HHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+..+.-..+||.. ++ ..++.|.... +......++..+.....+.+.+.++.+...++.++.-+ ....
T Consensus 336 ~~~Ff~~~~Dp~y-IK~~KLeIL~~La-----ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~------~~~a 403 (746)
T PTZ00429 336 LDSFYVRYSDPPF-VKLEKLRLLLKLV-----TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV------DSVA 403 (746)
T ss_pred HHhhhcccCCcHH-HHHHHHHHHHHHc-----CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC------hHHH
Confidence 6666667788864 54 4666665421 22345567778888888889999999999999998632 2234
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHhcHhHHH
Q 000098 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L--~~~~~~~~R~~aa~~L~~i~~~~g~~~l~ 1695 (2256)
+..+..|..++.+....+ ..++..+..+.+..... .+++.+...+ ..-.++..|.+.++-+|+.+..... ..
T Consensus 404 ~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~---~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~ 477 (746)
T PTZ00429 404 PDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPEL---LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GK 477 (746)
T ss_pred HHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccH---HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HH
Confidence 556677777776654433 35667777776654432 2455555543 2224455677777888988765532 34
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHH
Q 000098 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGHV 1763 (2256)
Q Consensus 1696 ~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L-~-d~~~~VR~~Al~al~~ 1763 (2256)
.++..++....+.++.||-..+.+..-+....+++.. ..+..++..+ . +.+++||+.|.--++.
T Consensus 478 ~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 478 DIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRL 543 (746)
T ss_pred HHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 4555556666677889998888777766555544333 3344444333 3 5678999988654443
No 36
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.32 E-value=5.7e-09 Score=135.50 Aligned_cols=235 Identities=16% Similarity=0.170 Sum_probs=147.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHHHHhhcCCCCCCCh--Hh
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY--SG 1134 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~~~~~~~~--~~ 1134 (2256)
..+.+|..++++|.|++||++..+|++.... ++...+... -+++-.++.+.+ ++
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~------h~~~~~~~~------------------led~~~rll~v~~Ldr 132 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKT------HGDSLSYEL------------------LEDLLIRLLCVLALDR 132 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHH------hcchhhHHH------------------HHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999877522 333333311 222233333444 56
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhccCC
Q 000098 1135 LFKALS-HSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKD 1212 (2256)
Q Consensus 1135 ll~~l~-~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~~~ 1212 (2256)
+-+|++ +..++||+++||+|+...+. .+..+...++.+..+.. .+.|+.|+|...+++|......+..
T Consensus 133 f~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~----------q~~w~ir~Ggll~iky~~air~d~l 202 (1549)
T KOG0392|consen 133 FGDFISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLR----------QPNWEIRHGGLLGIKYNVAIRQDLL 202 (1549)
T ss_pred hcccccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHc----------CcchhheechHHHHHHHHHHHHHHH
Confidence 667776 45889999999999999865 55667777777777632 3579999999999999987443321
Q ss_pred ---hhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhh---ccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHH
Q 000098 1213 ---LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKH---GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGA 1286 (2256)
Q Consensus 1213 ---~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~---g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~ 1286 (2256)
.+.++++. .+++.|.+++||..+......+.... ....+..++..+|..+...+.. . .-....+..+.+
T Consensus 203 ~~~~~~vl~~~-i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl-~---~s~~si~~ll~~ 277 (1549)
T KOG0392|consen 203 FQLLNLVLDFV-IEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDL-S---SSTASIMHLLDE 277 (1549)
T ss_pred HHHHHHHHHHH-HhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhc-c---hhhHHHHHHHHH
Confidence 23445554 37999999999999987655444433 2234556666666665442111 0 112233445555
Q ss_pred HHhhhc-----cCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHh
Q 000098 1287 LAKHLA-----KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330 (2256)
Q Consensus 1287 La~~l~-----~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~ 1330 (2256)
++.+.. ........++++++..+.+.-..++.++.+.+..+...
T Consensus 278 l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 278 LCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554321 00001124566677777766667777776666655543
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=8.1e-10 Score=136.60 Aligned_cols=378 Identities=17% Similarity=0.163 Sum_probs=266.1
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh----H-HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQG----V-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~----v-~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
.++..+...+...+-.+..++..+.+.-.... + ..++|.+++.+. +.+...+..|..+|..+|.+..++.....
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 33333333444446666667766654432211 1 467899999997 66789999999999999998877654333
Q ss_pred -hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc---hhH-HhHHHHHHhhhCCCCh--hHHHHHHHHHhc-ccc-cC
Q 000098 1498 -PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI-ASLVPTLLMGLTDPND--HTKYSLDILLQT-TFV-NT 1568 (2256)
Q Consensus 1498 -~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i-~~lv~~Ll~~l~d~~~--~vr~al~~L~~~-~~~-~~ 1568 (2256)
...+|.++.++.+++..|+..|.|||++++..-.. -.+ ...++.|+..+..+.. ..|.+..+|.+. ... +.
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 26889999999999999999999999999865321 112 4567778888877764 556655555441 111 11
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2256)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~ 1647 (2256)
-.......++|.+.+++.+.++++...+|.++..+... ..+.+.-.+ ..++|.|..++..+.+.++..|.+++|.++
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 11235677899999999999999999999999999863 222222222 357899999999999999999999999977
Q ss_pred HhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---H-HHHHHHHHHHhccCCCHHHHHHHHHH
Q 000098 1648 RGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASVRDGYLTL 1719 (2256)
Q Consensus 1648 ~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~-l~~ll~~ll~~l~~~~~~vR~~al~~ 1719 (2256)
.+-+.. .-...+|.|...+........|..+++.++.|..+.... . -..++|.++..++..+...|..++++
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 543321 123477888888886666668999999999998855433 1 25789999999999999999999999
Q ss_pred HHHhHhhhChhHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---hc---cchhch------HHHHHhhcC
Q 000098 1720 FKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHY---AT---TSLPLL------LPAVEDGIF 1785 (2256)
Q Consensus 1720 l~~La~~~g~~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~---~~---~~~~~l------lp~L~~~l~ 1785 (2256)
++.++....++-..|+- .+++++...|.-.+..+-..++.++..|.+.- +. ..+..+ +..++..-.
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~ 467 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS 467 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc
Confidence 99988776666566663 58899999997777766667777777765432 21 111111 222333334
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 000098 1786 NDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1786 d~~~~iR~~sv~llg~ll 1803 (2256)
++|..+...+...++...
T Consensus 468 hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 468 HENEEIYKKAYKIIDTYF 485 (514)
T ss_pred cccHHHHHHHHHHHHHhc
Confidence 577778888888877763
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.27 E-value=4.1e-10 Score=157.65 Aligned_cols=273 Identities=21% Similarity=0.246 Sum_probs=196.7
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2256)
.++.++..+.|+++.||..|..++..+. -+..+|.|...+.|+++.+|..|+..|+.+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 3556677888999999999998887763 244678888889999999999999999887653322
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHH
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
.+.+...|.|+++.||.+|+.+|+.+... + ...++..+.|++..+| .++..|.... . .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~------~~~l~~~L~D~d~~VR~~Av~aL~~~~------~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAG--D------AALFAAALGDPDHRVRIEAVRALVSVD------D------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccC--C------HHHHHHHhcCCCHHHHHHHHHHHhccc------C------cH
Confidence 23566678889999999999999887421 1 1245677888888887 4777776421 1 13
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHH
Q 000098 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2256)
Q Consensus 1580 ~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~li 1659 (2256)
.+...+.|.++.+|..++..++.+... .. ..++.|..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--GA--------PAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--cc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778888999999988888877541 11 125667788889999999999888887642 1 2344
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~il 1739 (2256)
+.+...|.+ +++.+|..++.+|+.+. . +..++.++..+.|+++.||..++.+++.+. ++ +...
T Consensus 810 ~~l~~aL~d-~d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALRA-SAWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhcC-CChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 556666665 56778888888887642 1 234567777888888999998888888751 11 2355
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH
Q 000098 1740 PAILDGLADENESVRDAALGAGH 1762 (2256)
Q Consensus 1740 p~Ll~~L~d~~~~VR~~Al~al~ 1762 (2256)
+.+...++|+++.||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 66778888888888888888765
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=4.1e-09 Score=130.49 Aligned_cols=349 Identities=17% Similarity=0.165 Sum_probs=236.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---cccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g---~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~ 1415 (2256)
.+.++..+.++ +...+..+.+.+..+...-. .+.+....+++.+.+.+....++..+..|.+++..|+.+....-.
T Consensus 68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 33444444444 35556667777766665432 122223368888888888776899999999999999987654323
Q ss_pred HhHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh---hH-HhHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhC
Q 000098 1416 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1416 pyv~-~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~---~v-~~ilp~Ll~~L~~~~-w~~R~~a~~~Lg~la~~~ 1489 (2256)
-++. ..+|.+..++..++..|++.|.+|++.++..-+.. -+ ...+++++..+.... ....+.+..+|..++.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 3332 47899999999999999999999999998765542 12 356778888777544 467777889999999886
Q ss_pred -hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC
Q 000098 1490 -PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2256)
Q Consensus 1490 -p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~ 1568 (2256)
|..--..+..++|.|..++.+.+++|...||||+..+...- ++.++.++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~vi----------------------------- 276 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMVI----------------------------- 276 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHH-----------------------------
Confidence 44434566789999999999999999999999999987642 22222111
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 000098 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSL 1646 (2256)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L 1646 (2256)
-..++|.+...|.+.+..++.-|..++||+.. ++..... -.-...+|.|..++. .+...+|..|+.+++.+
T Consensus 277 -----~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 277 -----DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred -----HccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 01234445555555555555555556666543 2111100 012346788888887 66677999999999999
Q ss_pred HHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH--HHHHHHHHHhccCCCHHHHHHHH
Q 000098 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF--EHILPDIIRNCSHQRASVRDGYL 1717 (2256)
Q Consensus 1647 ~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l--~~ll~~ll~~l~~~~~~vR~~al 1717 (2256)
..+-.++ .-..++|.|+..|+.. +...|..|+++++.+..+...+ |+ .++++.+...+.-.+..+-..++
T Consensus 350 tAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~L 428 (514)
T KOG0166|consen 350 TAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVAL 428 (514)
T ss_pred hcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHH
Confidence 8733222 1236899999999884 4779999999999988766555 22 45677777777656666666666
Q ss_pred HHHHHhHhh
Q 000098 1718 TLFKYLPRS 1726 (2256)
Q Consensus 1718 ~~l~~La~~ 1726 (2256)
.++..+-..
T Consensus 429 d~l~nil~~ 437 (514)
T KOG0166|consen 429 DGLENILKV 437 (514)
T ss_pred HHHHHHHHH
Confidence 666666554
No 40
>PRK09687 putative lyase; Provisional
Probab=99.20 E-value=1.6e-09 Score=129.84 Aligned_cols=149 Identities=21% Similarity=0.184 Sum_probs=75.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp 1461 (2256)
.+...+.++ +..+|..+..+|+.+.. ..+++.+...+.|+++.+|..+.++++.+...- ......+|
T Consensus 27 ~L~~~L~d~-d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~~~~a~~ 93 (280)
T PRK09687 27 ELFRLLDDH-NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RCQDNVFN 93 (280)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cchHHHHH
Confidence 344444444 56666666665544321 234444555556666666666666666653210 00123455
Q ss_pred HHHHh-ccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000098 1462 SLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2256)
Q Consensus 1462 ~Ll~~-L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 1540 (2256)
.+... +.|++|.+|..++.+||.+....+. ..+.+++.+...+.|+++.||..+..+|+.+.. ...++
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~ai~ 162 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------EAAIP 162 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHHHH
Confidence 55544 4556666666666666665322111 123444555555666666666666666654421 12344
Q ss_pred HHHhhhCCCChhHH
Q 000098 1541 TLLMGLTDPNDHTK 1554 (2256)
Q Consensus 1541 ~Ll~~l~d~~~~vr 1554 (2256)
.|+..+.|++..+|
T Consensus 163 ~L~~~L~d~~~~VR 176 (280)
T PRK09687 163 LLINLLKDPNGDVR 176 (280)
T ss_pred HHHHHhcCCCHHHH
Confidence 44444555544444
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.19 E-value=1.7e-09 Score=151.60 Aligned_cols=275 Identities=25% Similarity=0.291 Sum_probs=202.9
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHH
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~ 1699 (2256)
-++.|...|.|+++.||..|+.+|+.+.. +..++.|...|. +++..+|..++.+|+.+...... .+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~~~~~------~~ 687 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALG-DGAAAVRRAAAEGLRELVEVLPP------AP 687 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCc------hH
Confidence 45677788899999999999999987642 457788888885 46777999999999887543322 23
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHH
Q 000098 1700 DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPA 1779 (2256)
Q Consensus 1700 ~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~ 1779 (2256)
.+...+.++++.||..++..++.+.. +. .+.++..+.|+++.||..|..++..+ +. .+.
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~----~~------~~~ 746 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSV----DD------VES 746 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcc----cC------cHH
Confidence 45566778999999999998887541 11 12456788999999999999998764 11 134
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHH
Q 000098 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2256)
Q Consensus 1780 L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~ 1859 (2256)
+...+.|+++.+|..+++.|+.+.. ++ . ..+..|.....|.+..
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~---------------~~-~--------------------~~~~~L~~ll~D~d~~ 790 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGA---------------GG-A--------------------PAGDAVRALTGDPDPL 790 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcc---------------cc-c--------------------hhHHHHHHHhcCCCHH
Confidence 5667889999999999999987620 00 0 0122334456788899
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhh
Q 000098 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASR 1939 (2256)
Q Consensus 1860 Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~v 1939 (2256)
||.+|+..++.+.. +. .+.+.+...+.++++.+|..|+.+|+.+.. +..++.|...+.|+++.+
T Consensus 791 VR~aA~~aLg~~g~--~~-------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~~~V 854 (897)
T PRK13800 791 VRAAALAALAELGC--PP-------DDVAAATAALRASAWQVRQGAARALAGAAA-------DVAVPALVEALTDPHLDV 854 (897)
T ss_pred HHHHHHHHHHhcCC--cc-------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCCHHH
Confidence 99999999987633 11 112334555689999999999999987532 455677888889999999
Q ss_pred HHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000098 1940 RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2256)
Q Consensus 1940 R~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~ 1991 (2256)
|..+..+|+.+ -+. +...+.+..++.|.+++||..|..++..
T Consensus 855 R~~A~~aL~~~---~~~-------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 855 RKAAVLALTRW---PGD-------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHhcc---CCC-------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999875 111 2356777789999999999999988753
No 42
>PRK09687 putative lyase; Provisional
Probab=99.19 E-value=1.5e-09 Score=130.18 Aligned_cols=251 Identities=12% Similarity=0.045 Sum_probs=188.0
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Iv 1501 (2256)
++.+...+.|++..||..+..++..+. -..+++.+...+.+.+..+|..++.+||++...... .+..+
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~-------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~ 92 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRG-------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVF 92 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC-------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHH
Confidence 455666779999999999998887663 245667777778899999999999999997542111 23566
Q ss_pred HHHHHh-hcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHH
Q 000098 1502 PKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1502 p~L~~~-L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
|.|... ++|+++.||..|+.+|+.++..-.. .....++.+...+.|++..+|. ++.+|+... -...++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---------~~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN---------DEAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------CHHHHH
Confidence 777766 7899999999999999998643211 2245666777888899888984 666765421 124678
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHH
Q 000098 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2256)
Q Consensus 1580 ~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~li 1659 (2256)
.|...+.|.++.+|..|+..++.+.. . -+...+.|...+.|+++.||..|+.+||.+.. +..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~--~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av 225 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKY--D--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVL 225 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCC--C--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHH
Confidence 89999999999999999999988732 1 22467888889999999999999999987542 5789
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhcc-CCCHHHHHHHHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 1721 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~-~~~~~vR~~al~~l~ 1721 (2256)
|.|++.|.++. +|..++.+++++. . +..+|.+.+.+. +++..++..+...+.
T Consensus 226 ~~Li~~L~~~~---~~~~a~~ALg~ig----~---~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 226 SVLIKELKKGT---VGDLIIEAAGELG----D---KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHcCCc---hHHHHHHHHHhcC----C---HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 99999988743 5777777777653 2 256777777775 678888888776654
No 43
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=0.00011 Score=95.78 Aligned_cols=683 Identities=15% Similarity=0.132 Sum_probs=332.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccchhhc
Q 000098 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2256)
Q Consensus 1300 ~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~~~~~ 1378 (2256)
.++..+..++ ++++..|+++-.-|..+ ++.+..+..+++.+.++. +..+|.+|+.-+...+...-...-. +.
T Consensus 5 ~l~~~~~~T~-d~d~~~R~~AE~~L~q~-----~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~-~g 77 (1010)
T KOG1991|consen 5 SLLQIFRATI-DSDAKERKAAEQQLNQL-----EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEA-PG 77 (1010)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHh-----hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCC-CC
Confidence 3444444444 44577777555545443 345667777777776654 4567877776666554432111100 00
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~ 1457 (2256)
....-.+..| +++ ..+++.++. ....+|-.-..++..|..+--+..+.
T Consensus 78 --------~~~~I~e~dk-------------------~~irenIl~~iv~----~p~~iRvql~~~l~~Ii~~D~p~~Wp 126 (1010)
T KOG1991|consen 78 --------RPFGIPEEDK-------------------AVIRENILETIVQ----VPELIRVQLTACLNTIIKADYPEQWP 126 (1010)
T ss_pred --------CcCCCChHHH-------------------HHHHHHHHHHHHh----CchHHHHHHHHHHHHHHhcCCcccch
Confidence 0000001111 111 234444443 25566777677787776654446678
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh-----------hhHhhhhhhHHHHHHHhhcCCCHHHHH---HHHHHH
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-----------QQLSQCLPKIVPKLTEVLTDTHPKVQS---AGQTAL 1523 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p-----------~~l~~~L~~Ivp~L~~~L~D~~~~VR~---aA~~aL 1523 (2256)
.+++.+...+.+++-..=.+|+.++..++..-. ..+...+|.|.....+++.+++...-. ..++..
T Consensus 127 ~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKif 206 (1010)
T KOG1991|consen 127 GLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIF 206 (1010)
T ss_pred hHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 889999999998887777889999988887521 123445666666666677776543322 222222
Q ss_pred HHHHhh-cC-----chhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1524 QQVGSV-IK-----NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1524 ~~l~~~-i~-----~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
...+.. ++ +..+..-+..++..++.|-+.- -.+ .+ |. -.-...-|.+++-|.
T Consensus 207 ks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E-----------~l~-~d--------~e--~R~~~~wwK~KKWa~ 264 (1010)
T KOG1991|consen 207 KSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE-----------VLS-LD--------PE--DRSSWPWWKCKKWAL 264 (1010)
T ss_pred HHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh-----------ccc-CC--------hh--hcccccchhhHHHHH
Confidence 222211 11 0111222223333333321100 000 00 00 000123467777777
Q ss_pred HHHHHHhhhcCCCCcch------------hhhhhhhHHHHHhhcC------CCHHHHHHHHHHHHHHHHhhCcC-chHHH
Q 000098 1598 QIVGNMCSLVTEPKDMI------------PYIGLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGMGEE-NFPDL 1658 (2256)
Q Consensus 1598 ~~l~~L~~~l~~~~~l~------------~~l~~Ll~~L~~~L~d------~~~~VR~~a~~aL~~L~~~~g~~-~~~~l 1658 (2256)
.++..+++..+++.... .|.+.++..+++.+.. -.++|-..+..-+... +... .++-+
T Consensus 265 ~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~---Vs~~~twkll 341 (1010)
T KOG1991|consen 265 HILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQC---VSHASTWKLL 341 (1010)
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh---ccHHHHHHHh
Confidence 78877777655543221 2334444444444431 1222322222222221 1111 12222
Q ss_pred HHHHHHHhhc------------------CCCHHH-------------HHHHHHHHHHHHHHhcHhHHHHHHHHHHHhcc-
Q 000098 1659 VSWLLDALKS------------------DNSNVE-------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCS- 1706 (2256)
Q Consensus 1659 ip~Ll~~L~~------------------~~~~~~-------------R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~- 1706 (2256)
-|.+--.+.+ |+..-. +.++...+-.++..-|++.+.++++.+...++
T Consensus 342 ~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~ 421 (1010)
T KOG1991|consen 342 KPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTR 421 (1010)
T ss_pred hhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh
Confidence 2222111111 111112 23445557777788888888888888887765
Q ss_pred -----C--CCHHHHHHHHHHHHHhHhhhChh--HHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-Hhhccchhc
Q 000098 1707 -----H--QRASVRDGYLTLFKYLPRSLGVQ--FQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVE-HYATTSLPL 1775 (2256)
Q Consensus 1707 -----~--~~~~vR~~al~~l~~La~~~g~~--f~~yl~-~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~-~~~~~~~~~ 1775 (2256)
. .++.-+++++.++|.++..+-.. +..-++ -+.+.++..++++.-..|..|+..+..+.. .+..
T Consensus 422 ~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d----- 496 (1010)
T KOG1991|consen 422 YKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD----- 496 (1010)
T ss_pred hcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC-----
Confidence 2 36778899999999999776542 222222 133444445555544555554444433220 0000
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc-
Q 000098 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS- 1854 (2256)
Q Consensus 1776 llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~- 1854 (2256)
.. ...+.+...+.++.
T Consensus 497 --------------------------------------------------~~-------------~l~~ale~t~~~l~~ 513 (1010)
T KOG1991|consen 497 --------------------------------------------------PN-------------NLSEALELTHNCLLN 513 (1010)
T ss_pred --------------------------------------------------hH-------------HHHHHHHHHHHHhcc
Confidence 00 01122233334443
Q ss_pred CCcHHHHHHHHHHHHHHHhcCh---hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchh---chHHHH
Q 000098 1855 DVSLSVRQAALHVWKTIVANTP---KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---SIIPIL 1928 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~---~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~---~llp~L 1928 (2256)
|....||-.|+-++..+..+.+ ..+++++|.+++.+.+..+.-+.+. -..++..++..+++...| ++...|
T Consensus 514 d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~L 590 (1010)
T KOG1991|consen 514 DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNL 590 (1010)
T ss_pred CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 7777788888888988888876 5699999999999887765544332 223444445444443211 111111
Q ss_pred hhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH------Hhc--
Q 000098 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC---DSILEVRESAGLAFSTLFK------SAG-- 1997 (2256)
Q Consensus 1929 ~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~---D~~~~VR~~A~~al~~l~~------~~g-- 1997 (2256)
. ....+++. |.++..-..+..|.|.+.. .+.
T Consensus 591 a--------------------------------------~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~ 632 (1010)
T KOG1991|consen 591 A--------------------------------------ETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENH 632 (1010)
T ss_pred H--------------------------------------HHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 11111111 1222222222222222211 000
Q ss_pred hhhH----HhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHh
Q 000098 1998 MQAI----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073 (2256)
Q Consensus 1998 ~~~~----~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~ 2073 (2256)
+..+ ..++|.+...|.++-. ...+.+-+++.. -++..+.++...++.+.-+.+++...-..|+.
T Consensus 633 p~vl~~le~~~l~vi~~iL~~~i~--dfyeE~~ei~~~----------~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~ 700 (1010)
T KOG1991|consen 633 PEVLKQLEPIVLPVIGFILKNDIT--DFYEELLEIVSS----------LTFLSKEISPIMWGLLELILEVFQDDGIDYFT 700 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhh----------hhhhhcccCHHHHHHHHHHHHHHhhhhHHHHH
Confidence 0000 1122222222222210 111111111110 01111122223556666666666555566666
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHHHHhchhhhhhhH
Q 000098 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDN--QASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2256)
Q Consensus 2074 ~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~--~~~vR~~A~~~l~~l~~~~~~~~~~y~ 2151 (2256)
.++|.+-+.+.-..+.+.. ...+...+...+...+.++ ...-+..|+..+..++.+++..+..|+
T Consensus 701 d~~~~l~N~vt~g~~~~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~i 767 (1010)
T KOG1991|consen 701 DMMPALHNYVTYGTPSLLS-------------NPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYI 767 (1010)
T ss_pred HHHHHHhhheeeCchhhhc-------------cchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHh
Confidence 6666665554322211110 1133344444445555543 355688899999999988877888899
Q ss_pred HHHHHHHHHHcCC--CChHHHHHHHHHHHH
Q 000098 2152 PNMISTLIVLLSD--SDSTTVAAAWEALSR 2179 (2256)
Q Consensus 2152 ~~il~~L~~~l~D--~d~~Vr~~A~~aL~~ 2179 (2256)
+.++...+..+.+ .+...|..+.+-.-.
T Consensus 768 plf~~~a~~~l~~~~e~s~~~~~~leVvin 797 (1010)
T KOG1991|consen 768 PLFLELALSRLTREVETSELRVMLLEVVIN 797 (1010)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999988888866 555666665554443
No 44
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.12 E-value=2.4e-06 Score=109.19 Aligned_cols=640 Identities=17% Similarity=0.173 Sum_probs=330.2
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHH--------HHHHHhhcC--
Q 000098 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA--------AEDIWDRYG-- 1125 (2256)
Q Consensus 1056 ~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~--------~~~~w~~~~-- 1125 (2256)
.+.+..+|+|.+|||.++|.+|+.+|+..... +.....+..+- +.++..-.-|+. -...|..+.
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~-----~~f~~aL~~va-~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~ 76 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELT-----EGFGVALAEVA-ANKDASLPLRQIALVLLKRYIEKHWSPNFEA 76 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccc-----hHHHHHHHHHH-hCcccCchHHHHHHHHHHHHHHHhCCChHhh
Confidence 35788899999999999999999999987622 11223334432 445555555555 445775432
Q ss_pred CCCCC----C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhH
Q 000098 1126 YDFGT----D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 1195 (2256)
Q Consensus 1126 ~~~~~----~----~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~ 1195 (2256)
++-+. + + ..++..+-+++..+|.+++.++..++. .||+.|++++..+..+... .+-..=+
T Consensus 77 fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~----------~n~n~i~ 146 (1005)
T KOG2274|consen 77 FRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS----------GNENSIH 146 (1005)
T ss_pred ccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc----------cchhhhh
Confidence 12111 1 2 456666778899999999999999875 5999999999999987531 1223457
Q ss_pred HHHHHHHHhhhhhcc--------CChhHhHHHHHHhhcCCCCHHHHHHH-----HHHHHHHHHhhcc-------ccccch
Q 000098 1196 GIALALHSAADVLRT--------KDLPVIMTFLISRALADTNADVRGRM-----LNAGIMIIDKHGR-------DNVSLL 1255 (2256)
Q Consensus 1196 ~~~~aL~~l~~~~~~--------~~~~~l~~~lv~~~l~D~~~~VR~~a-----~~a~~~~i~~~g~-------~~~~~L 1255 (2256)
+++.+|..+..-... -..+.+.... ......+..-|..+ ...+...+..++. ..+..+
T Consensus 147 ~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f--~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~ 224 (1005)
T KOG2274|consen 147 GAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIF--ALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQI 224 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccchhhhhhhh--hhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 778787776542211 1112211111 11122222222222 2334444444432 123444
Q ss_pred HHHHHHHhhccCCChh-hhhhhhhHHHHHHHHHHhhhccC-CcchHHHHHHHHHHcC------------C------C---
Q 000098 1256 FPIFENYLNKKASDEE-KYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLN------------T------P--- 1312 (2256)
Q Consensus 1256 l~~l~~~L~~~~~~~~-~~~~vr~~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~------------~------~--- 1312 (2256)
++.+...+.+.-+... .+-..|.....++..+.+.++.. .|.....++..+..+. . +
T Consensus 225 l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~d 304 (1005)
T KOG2274|consen 225 LNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYD 304 (1005)
T ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccC
Confidence 5555555444211110 12245666666777666665432 2222222222221110 0 0
Q ss_pred CHHHHHHHHHh-------hHHhHHh------hcCchHHHHHHH--HHHHh----------------cC-CCHHHHHHHHH
Q 000098 1313 SEAVQRAVSSC-------LSPLMQS------MQDEAPTLVSRL--LDQLM----------------KS-DKYGERRGAAF 1360 (2256)
Q Consensus 1313 ~~~Vq~~~~~~-------L~~lv~~------~~~~~~~~l~~L--l~~L~----------------~~-~~~~vR~~Aa~ 1360 (2256)
+...++.+-.| +..++.. .....++.+..+ +..+. ++ +.+.+|..+--
T Consensus 305 sd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd 384 (1005)
T KOG2274|consen 305 SDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRD 384 (1005)
T ss_pred CchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHH
Confidence 00111111111 1111111 111122222211 11111 11 12456666666
Q ss_pred HHHHHHhhhCcccchhhcHHHH----HHH-----HHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC
Q 000098 1361 GLAGVVKGFGISSLKKYGIAAT----LRE-----GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2256)
Q Consensus 1361 ~L~~lv~~~g~~~~~~~~il~~----L~~-----~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D 1431 (2256)
.+-.+...+|..... .+... +.. ...++..|...++.+.+.+... .++.-..++..+...+...+.-
T Consensus 385 ~~~~v~~~f~~~~i~--~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~ 460 (1005)
T KOG2274|consen 385 LLLEVITTFGNEGIN--PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVY 460 (1005)
T ss_pred HHHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhccc
Confidence 666677766654443 22222 111 1123334555655555444433 2322334455555555555443
Q ss_pred -CcHHHHHHHHHHHHHHHhh--hhHhhHHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh
Q 000098 1432 -QVVAVREAAECAARAMMSQ--LSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507 (2256)
Q Consensus 1432 -~~~~VR~aa~~al~~l~~~--l~~~~v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~ 1507 (2256)
..+..--.+..++..+... ..+.-...++...+..+. +...-.|.+|+..+...+ .++.+.+.+|.|+..+.++
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~ql 538 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQL 538 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHH
Confidence 2343333555666554443 122223455555556655 566667888887766544 5677788899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCch-------hHHhHHHHHHhhhCCCCh--hHHHHHHHHHhcccccCCChhhHhhHH
Q 000098 1508 LTDTHPKVQSAGQTALQQVGSVIKNP-------EIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2256)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~i~~~-------~i~~lv~~Ll~~l~d~~~--~vr~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2256)
..+...+|-....++|...++.=+.. .....+..+.+..+||.- .+..++..+.+. .....|.....+
T Consensus 539 as~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~---~~~~g~m~e~~i 615 (1005)
T KOG2274|consen 539 ASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI---AANYGPMQERLI 615 (1005)
T ss_pred cccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HHhhcchHHHHH
Confidence 99999999999999999888753211 113344455666677721 112344444431 111223445677
Q ss_pred HHHHHhhcCCC----HHHHHHHHHHHHHHhhhcCCCCcc-hhhhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhh--
Q 000098 1579 PIVHRGLRERS----AETKKKAAQIVGNMCSLVTEPKDM-IPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGM-- 1650 (2256)
Q Consensus 1579 p~L~~~L~d~~----~~vR~~a~~~l~~L~~~l~~~~~l-~~~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~-- 1650 (2256)
|.+...+.... +..-..+..++..+.+. .+..+ ........|.+.++.- ..+-.+-..+-.|+..+...-
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~--tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRN--TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhc--CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 88888776544 45556667777777763 33222 2233445666655543 344555567788888877641
Q ss_pred ------CcC--chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccC-CCHHHHHHHHH
Q 000098 1651 ------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSH-QRASVRDGYLT 1718 (2256)
Q Consensus 1651 ------g~~--~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~-~~~~vR~~al~ 1718 (2256)
++. .+-.++..+-+.|..+.+...-..+..-+..++...|.+ .++.++..++..++. ....+-+..+.
T Consensus 694 q~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~ 773 (1005)
T KOG2274|consen 694 QLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIM 773 (1005)
T ss_pred HHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111 234666666655655433311111112245555556654 345566666555543 34555555555
Q ss_pred HHHHhH
Q 000098 1719 LFKYLP 1724 (2256)
Q Consensus 1719 ~l~~La 1724 (2256)
.|..+.
T Consensus 774 VfahL~ 779 (1005)
T KOG2274|consen 774 VFAHLV 779 (1005)
T ss_pred HHHHHh
Confidence 555443
No 45
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.98 E-value=0.00065 Score=87.98 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=101.0
Q ss_pred CCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcc---hhcHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHH
Q 000098 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID---EEGVESLVSELLKGVGDNQ---ASIRRSSAYLIGYF 2139 (2256)
Q Consensus 2066 ~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~---~~~~~~ll~~Ll~~l~~~~---~~vR~~A~~~l~~l 2139 (2256)
+.+.|.++.++|.|+++++-+|..+|-.+..++...+...+ .++++.++|.++..-.|.+ ..+|..|+.+++.+
T Consensus 901 ~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL 980 (1030)
T KOG1967|consen 901 QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNAL 980 (1030)
T ss_pred HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999887543 4889999999999887766 67999999999999
Q ss_pred HHhch-hhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q 000098 2140 YKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2140 ~~~~~-~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
.+..+ ..+.+|.+.+++.+.+.|+|+..-||+.|..|=....
T Consensus 981 ~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 981 TRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred hccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 98554 4577899999999999999999999999988866653
No 46
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=0.00069 Score=86.64 Aligned_cols=300 Identities=15% Similarity=0.153 Sum_probs=173.7
Q ss_pred hccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1410 l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
+++.|+.++...++.+.+.+.-+++..+....++ .++ -..|...|+.+.-.+..-
T Consensus 224 iPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~--------------~~l-----------~~lka~ICEi~~LY~~kY 278 (960)
T KOG1992|consen 224 IPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEA--------------TVL-----------DKLKAQICEIFNLYATKY 278 (960)
T ss_pred chHHHHhhHHHHHHHHHHHHhccCcccccCcccc--------------cHH-----------HHHHHHHHHHHHHHHHhh
Confidence 4556777777778877777664444332210000 000 123445577777667777
Q ss_pred hhhHhhhhhhHHHHHHHhhcCCCHHHHH--HHHHHHHHHHhhcCchhH------HhHHHHHHhhhCCCChhHHHHHHHHH
Q 000098 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQS--AGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2256)
Q Consensus 1490 p~~l~~~L~~Ivp~L~~~L~D~~~~VR~--aA~~aL~~l~~~i~~~~i------~~lv~~Ll~~l~d~~~~vr~al~~L~ 1561 (2256)
++.+..++++++.....++.+..+..|. -++.|+.-+..+...+.. +.++..+.+...=|+-..|..-..+.
T Consensus 279 eEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElF 358 (960)
T KOG1992|consen 279 EEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELF 358 (960)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHh
Confidence 8888889999998888888776655554 455666666665544322 34444454444444333332111111
Q ss_pred hcccccCCChhhHhhHHHHHHHhhcCCCHHH-HHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHH-hhcC--CCHHHHH
Q 000098 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVD--PIPEVRS 1637 (2256)
Q Consensus 1562 ~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~v-R~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~-~L~d--~~~~VR~ 1637 (2256)
-...+..+.+.+...+.++ |+.|+..+..+++.. +. .+.+.+..-+..++. ...+ .+|.-..
T Consensus 359 ------------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~f-e~-~vt~v~~~~v~~~l~~y~~nPS~nWk~kd 424 (960)
T KOG1992|consen 359 ------------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNF-EG-QVTGVFSSEVQRLLDQYSKNPSGNWKKKD 424 (960)
T ss_pred ------------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHh-cc-hhHHHHHHHHHHHHHHhccCCCccccccc
Confidence 1123455667776665555 567788899999864 32 222333333333322 3333 4788888
Q ss_pred HHHHHHHHHHHhhCcC---------------ch-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHH
Q 000098 1638 VAARAIGSLIRGMGEE---------------NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDI 1701 (2256)
Q Consensus 1638 ~a~~aL~~L~~~~g~~---------------~~-~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~l 1701 (2256)
.+...+.+++...+.. || ..++|.|...=. ...+..+..+..-+-.+-..+|+..+-.++|.+
T Consensus 425 ~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v-n~~pilka~aIKy~~~FR~ql~~~~lm~~~p~l 503 (960)
T KOG1992|consen 425 RAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV-NEFPILKADAIKYIYTFRNQLGKEHLMALLPRL 503 (960)
T ss_pred hhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc-ccccchhhcccceeeeecccCChHHHHHHHHHH
Confidence 8888888887653211 11 223343322000 123334444444444455667888888999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhHhhhCh---------hHHHHHHHHHHHHHHhcCCC
Q 000098 1702 IRNCSHQRASVRDGYLTLFKYLPRSLGV---------QFQNYLQQVLPAILDGLADE 1749 (2256)
Q Consensus 1702 l~~l~~~~~~vR~~al~~l~~La~~~g~---------~f~~yl~~ilp~Ll~~L~d~ 1749 (2256)
+..++.+...|-..+..++..+...-++ +..||+..++..+.+.++-+
T Consensus 504 i~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p 560 (960)
T KOG1992|consen 504 IRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP 560 (960)
T ss_pred HHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC
Confidence 9999999999999998888876654333 45677777777777666543
No 47
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.95 E-value=0.0002 Score=92.26 Aligned_cols=695 Identities=16% Similarity=0.138 Sum_probs=329.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhcc--
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRT-- 1210 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~-- 1210 (2256)
-+++....+++..+|..|+..+. +++.+-. +-..|.+... +.+.+.+.|+++..-|+........
T Consensus 7 i~~L~~~ls~d~~vr~~AE~~l~----qle~~~~-f~~aL~~va~--------~~~~sl~lRQ~A~v~L~~yie~hW~~~ 73 (1005)
T KOG2274|consen 7 IELLSGSLSADQNVRSQAETQLK----QLELTEG-FGVALAEVAA--------NKDASLPLRQIALVLLKRYIEKHWSPN 73 (1005)
T ss_pred HHHHHhhcCCChhHHHHHHHHHh----ccccchH-HHHHHHHHHh--------CcccCchHHHHHHHHHHHHHHHhCCCh
Confidence 45566667889999998886663 3322211 2222222211 1124567788888877776653211
Q ss_pred -----------CChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhH
Q 000098 1211 -----------KDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279 (2256)
Q Consensus 1211 -----------~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~ 1279 (2256)
++...+++..+.+++.|+|..+|.+...++..+....-++.|++++|.+.+++.. +++ .--.+
T Consensus 74 ~E~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~--~n~----n~i~~ 147 (1005)
T KOG2274|consen 74 FEAFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS--GNE----NSIHG 147 (1005)
T ss_pred HhhccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc--cch----hhhhh
Confidence 1123344444456777999999999999999998888899999999999999875 221 12356
Q ss_pred HHHHHHHHHhhhccC----C-cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCC---
Q 000098 1280 VVIFTGALAKHLAKD----D-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDK--- 1351 (2256)
Q Consensus 1280 av~~L~~La~~l~~~----~-~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~--- 1351 (2256)
++.+|..+...+... . |-.-.-+.++......++...+-.++. ..++..++..+....+
T Consensus 148 am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~-------------~~lf~sc~~li~~~~e~~~ 214 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAAR-------------GKLFTSCLTLITNVEEVWA 214 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhh-------------hHHHHHHHHHHhHHHHHHH
Confidence 888888877654211 1 111111122222222333222221111 1122222222222111
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL--ADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l--~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l 1429 (2256)
..+|.--.+++..+...+ .+.+ .+..+|..|...+.++..+.+.+.....||+...++.....+
T Consensus 215 ~~~~~~~s~~l~~~~~~l--------------~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~ 280 (1005)
T KOG2274|consen 215 EHVKVFLSQILNQFMDIL--------------EHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTL 280 (1005)
T ss_pred HHHHHHHHHHHHHHHHHH--------------hhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHH
Confidence 112222223333332222 1111 122367788888888888888888888888887777665433
Q ss_pred C-CCcHHHHHHHHHHHHHHHhhhhHh----hHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC--hhhHhhhhhhHHH
Q 000098 1430 S-DQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA--PQQLSQCLPKIVP 1502 (2256)
Q Consensus 1430 ~-D~~~~VR~aa~~al~~l~~~l~~~----~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~--p~~l~~~L~~Ivp 1502 (2256)
. --...+|.....+-...-.....+ .+...+-.+++.+ ..+..+. .+.+...++.+++
T Consensus 281 ~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~---------------s~i~t~~~~~~ti~~~l~~lI~ 345 (1005)
T KOG2274|consen 281 EKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFL---------------STIVTNRFLSKTIKKNLPELIY 345 (1005)
T ss_pred HHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHH---------------HHHHHHHHHHHHhhhhhHHHHH
Confidence 2 112233332211100000000000 0111111111111 1111000 0000011111111
Q ss_pred HHHH------------------hhcCC--CHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHh
Q 000098 1503 KLTE------------------VLTDT--HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2256)
Q Consensus 1503 ~L~~------------------~L~D~--~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~ 1562 (2256)
.++. ...|. ...+|..+...+..+...++++.+..+....-+.+. ++-.
T Consensus 346 ~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~-------es~a---- 414 (1005)
T KOG2274|consen 346 QLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQ-------ESQA---- 414 (1005)
T ss_pred HHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHH-------HHHH----
Confidence 1111 11111 123444444444444444444333322222111110 0000
Q ss_pred cccccCCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc-CCCHHHHHHHH
Q 000098 1563 TTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAA 1640 (2256)
Q Consensus 1563 ~~~~~~~~~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~-d~~~~VR~~a~ 1640 (2256)
...+... .|..... .+...+. +........++..+...+...+. ...|..-..+.
T Consensus 415 -------------------t~~~~~~~~wk~qea---~l~a~~~-~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~ 471 (1005)
T KOG2274|consen 415 -------------------TYLFNNESWWKIQEA---LLVAAES-VRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAF 471 (1005)
T ss_pred -------------------HHHhcchHHHHHHHH---HHHHHhh-cccCcchHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 0001111 1221111 1111111 11111223445555555555544 34555555677
Q ss_pred HHHHHHHHh--hCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHhccCCCHHHHH
Q 000098 1641 RAIGSLIRG--MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRD 1714 (2256)
Q Consensus 1641 ~aL~~L~~~--~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~l~~~~~~vR~ 1714 (2256)
.+++.+... ..+..+..++......+..+.....|.++..++...+ +...+ +.++..+++.+.+.+..+-.
T Consensus 472 ~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~ 548 (1005)
T KOG2274|consen 472 LTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLV 548 (1005)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHH
Confidence 777766665 3344455666666666766666667887777766555 44433 45555666666666777777
Q ss_pred HHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHH---HhhccchhchHHHHHhhcCCCC
Q 000098 1715 GYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLA--DENESVRDAALGAGHVLVE---HYATTSLPLLLPAVEDGIFNDN 1788 (2256)
Q Consensus 1715 ~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~--d~~~~VR~~Al~al~~iv~---~~~~~~~~~llp~L~~~l~d~~ 1788 (2256)
..+.+++.+++.- +.|..-. ..+.|..+..+. .++|.|-..+...+..+.+ ++|+ .....+|.+...+.-++
T Consensus 549 llmE~Ls~vv~~d-pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 549 LLMEALSSVVKLD-PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP-MQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHHHHhccC-hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHcCcc
Confidence 7777777666543 3333222 234444433221 2234666666555555443 3332 12234555544433222
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000098 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868 (2256)
Q Consensus 1789 ~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l 1868 (2256)
|.. .......++.++
T Consensus 627 ~~~-----------------------------------------------------------------~~~l~~~aidvL 641 (1005)
T KOG2274|consen 627 DKA-----------------------------------------------------------------PAGLCAIAIDVL 641 (1005)
T ss_pred ccc-----------------------------------------------------------------CchhhHHHHHHH
Confidence 211 012334456677
Q ss_pred HHHHhcChhHH-HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhh--------Cccc--hhchHHHHhhhcCCC-
Q 000098 1869 KTIVANTPKTL-KEIMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKL--------GERV--LPSIIPILSRGLKDP- 1935 (2256)
Q Consensus 1869 ~~l~~~~~~~l-~~~l~~Ll~~L~~~L-~~~~~~~R~~A~~aL~~lv~~~--------~~~~--l~~llp~L~~~l~d~- 1935 (2256)
..++.++|+.+ ..++...++.+.++. .+.+...-+.+.+||..++... +++- +-.++..+.+.++-.
T Consensus 642 ttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~ 721 (1005)
T KOG2274|consen 642 TTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPET 721 (1005)
T ss_pred HHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCcc
Confidence 77777776543 335555666666554 4556778888999999888652 2322 347777777666422
Q ss_pred ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 000098 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1936 ~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D-~~~~VR~~A~~al~~l~ 1993 (2256)
+...-..+-.-+.+++...|. .+.+.+++++..+...+.. ....|-+.-...|..+.
T Consensus 722 sds~a~~VG~lV~tLit~a~~-el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 722 SDSAAAFVGPLVLTLITHASS-ELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred chhHHHHHhHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 111111222223345555554 3556667777766665543 33444444444454443
No 48
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.91 E-value=4.2e-06 Score=109.81 Aligned_cols=394 Identities=16% Similarity=0.164 Sum_probs=237.8
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh-HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh-hhhhHHH
Q 000098 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVP 1502 (2256)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~-v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp 1502 (2256)
++.++.+.+.+.-+.+...++.++....+.. ...+.+.+..++.+++..+|..++..++.++......... .=.++++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 6677777766666778888999988877766 4788899999999999999999999999998765432211 1147899
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHH
Q 000098 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2256)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2256)
.++.++.|++..|...|..+|..+++.- +.++.+++ + ...+.+.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~--------~--------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFD--------S--------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhC--------c--------------------------chHHHHH
Confidence 9999999999999999999999998632 22222211 0 0123344
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh--hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh-CcCch--HH
Q 000098 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENF--PD 1657 (2256)
Q Consensus 1583 ~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~--~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~-g~~~~--~~ 1657 (2256)
..+...+..+|..+..++.+++.. .+ +...+.. .+++.+...+.+.+.-+|..+...++.++..- |-+|+ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S~-~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--SP-EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--CH-HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 444444556777777777777762 22 2222332 48888888899999999999999999999822 12233 24
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH------HHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhh
Q 000098 1658 LVSWLLDALKSDNSNVERSGAA------QGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2256)
Q Consensus 1658 lip~Ll~~L~~~~~~~~R~~aa------~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~ 1727 (2256)
+++.+.+.+.+..+.. |.++. .-.+.+... .+. .++.++..+.....+.++..+..|+.++|.++...
T Consensus 244 i~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV 321 (503)
T ss_pred HHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH
Confidence 7777777776532222 22221 223333332 222 33556667777778889999999999999998654
Q ss_pred Ch-hH-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000098 1728 GV-QF-----QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2256)
Q Consensus 1728 g~-~f-----~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ 1801 (2256)
.. .+ .+-+..++..+.........++|..+++++..+.........+.+
T Consensus 322 ~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i------------------------- 376 (503)
T PF10508_consen 322 EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI------------------------- 376 (503)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH-------------------------
Confidence 22 21 112223333333333344444555555555554322111000000
Q ss_pred HHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHH
Q 000098 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2256)
Q Consensus 1802 ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~ 1881 (2256)
....+.+.+.++...... .++...+.+-.++|.++..+|..++.+ +|..+.
T Consensus 377 -------------------------~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~ 427 (503)
T PF10508_consen 377 -------------------------LSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQRE 427 (503)
T ss_pred -------------------------HHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcC-HHHHHH
Confidence 011122333344333222 233344566678999999999998874 566555
Q ss_pred HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1882 IM--PVLMNTLISSLASSSSERRQVAGRALGELV 1913 (2256)
Q Consensus 1882 ~l--~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv 1913 (2256)
+. |.+++.+.+.-.+.+.+.+++=..++..++
T Consensus 428 i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 428 ICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 43 345555544333444444444444444444
No 49
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00067 Score=86.74 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHH--------HHHHhhcCCC-
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYD- 1127 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~--------~~~w~~~~~~- 1127 (2256)
+.+...|..+++||+++|+.||++|+..... ++++ ..++.. ++....|...|-.| +.-|....-.
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y~--l~lL~L--v~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNYP--LLLLNL--VANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccC--CCch--HHHHHH--HhccCcChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 5677889999999999999999999977522 2332 223333 23333355555443 3367543322
Q ss_pred --CC----CCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Q 000098 1128 --FG----TDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSL 1175 (2256)
Q Consensus 1128 --~~----~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~ 1175 (2256)
+. +.+ ..++...-+....+.....+++.-+++ ..|+.|+++++.|.+.
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ 134 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVAR 134 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhh
Confidence 22 122 233333336668899999999998885 4789999988888775
No 50
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.77 E-value=2.8e-07 Score=109.17 Aligned_cols=182 Identities=26% Similarity=0.313 Sum_probs=132.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHH-------HHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH
Q 000098 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL-------REGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2256)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L-------~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~ 1419 (2256)
..+.+|..|..|...|..++.+...... ...+++.+ ...+.+. ...+...|+.++..++..++..|+||+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4566899999999999999987721111 11233333 3333333 3456677899999999999999999999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhH-HHHHHHhccCCChhHHHHHHHHHHHHHhhCh---hhHhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV-LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ 1495 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~i-lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p---~~l~~ 1495 (2256)
.++|.++..++|....+|++|..++..++.+.+ ....+ ++.+..+..++++.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999999999999999999999999998876 11233 6777788899999999999999999998887 44433
Q ss_pred --hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1496 --CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1496 --~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
.++.+++.+..++.|++++||.+|-.++..+.+.+++
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999877654
No 51
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-06 Score=114.75 Aligned_cols=295 Identities=19% Similarity=0.206 Sum_probs=206.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
+++.+...+..-+..+.+-.|+..+..++....+ +.-+..++|-++.++.|+...||-.|..++..+.....+
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~----- 495 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD----- 495 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC-----
Confidence 4444555555444566677788877777777664 566888999999999999999999998887766432211
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i~~ 1537 (2256)
..|.+..-+-+-|+|.|-.++.| ....||.+-+.+|..+++..- .+..
T Consensus 496 -----------------------------~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 496 -----------------------------IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred -----------------------------CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 01111111223478888889999 677899999999999986531 1222
Q ss_pred HHHHHHh--hhCCCChhHH------HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000098 1538 LVPTLLM--GLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2256)
Q Consensus 1538 lv~~Ll~--~l~d~~~~vr------~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~ 1609 (2256)
+...+-. .+++|+..+. .-++.| +..+-..+..++.|..+-||+...+.+.-+|..++.
T Consensus 545 ~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 2222222 2445543210 111121 112334556677888899999999999999987664
Q ss_pred CCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 000098 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2256)
Q Consensus 1610 ~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~ 1688 (2256)
.+. -+.+++.|...|+|.+|.+|.+.+..|..++-.+|.. .-+.++|.|.+.|.+.++ .+-..+..++..+++.
T Consensus 612 ~ks----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE-~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 612 EKS----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEE-AVIVSALGSLSILIKL 686 (1431)
T ss_pred ccc----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHh
Confidence 322 2358899999999999999999999998888778866 345688999999987544 4677788888888763
Q ss_pred --hcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh
Q 000098 1689 --LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2256)
Q Consensus 1689 --~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~ 1729 (2256)
+.+.+..+++..+...+.+++.-+|.+++..+..++..++.
T Consensus 687 ~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 34446677888888889999999999999999988887764
No 52
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=7.7e-05 Score=94.30 Aligned_cols=400 Identities=18% Similarity=0.151 Sum_probs=229.0
Q ss_pred cCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1332 ~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
+.+...+++........ ++..+++-.---|-..+....+..+ --+.++++.+.|+ |+-.|..|+.++..|
T Consensus 66 G~dvS~~Fp~VVKNVas-kn~EVKkLVyvYLlrYAEeqpdLAL---LSIntfQk~L~Dp-N~LiRasALRvlSsI----- 135 (968)
T KOG1060|consen 66 GKDVSLLFPAVVKNVAS-KNIEVKKLVYVYLLRYAEEQPDLAL---LSINTFQKALKDP-NQLIRASALRVLSSI----- 135 (968)
T ss_pred CCcHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhcCCCcee---eeHHHHHhhhcCC-cHHHHHHHHHHHHhc-----
Confidence 45577777777766654 4477777666666666665444333 2356677777777 788888776654433
Q ss_pred cCchHh-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh
Q 000098 1412 RLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2256)
Q Consensus 1412 ~~~~py-v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p 1490 (2256)
--|. .+-++-.+-++..|..+.||..|+.|+-.+.+ +.++.-..++..+-..|.|.+.-+--+|+.++.. .||
T Consensus 136 --Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~AF~e---vCP 209 (968)
T KOG1060|consen 136 --RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEE---VCP 209 (968)
T ss_pred --chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHH---hch
Confidence 1122 22233444567789999999999998888754 3333334566666666778777776667666554 445
Q ss_pred hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh-cCch-------------------------------hHHhH
Q 000098 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV-IKNP-------------------------------EIASL 1538 (2256)
Q Consensus 1491 ~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~-i~~~-------------------------------~i~~l 1538 (2256)
+.+.- +..=...++.++-|-+..=+.-.+..|-+.++. +..| .++-+
T Consensus 210 erldL-IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lL 288 (968)
T KOG1060|consen 210 ERLDL-IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLL 288 (968)
T ss_pred hHHHH-hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHH
Confidence 54321 112233455666666555555666666666543 1111 01111
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh
Q 000098 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~ 1618 (2256)
+...-.++...+..+--|... .|.+--.......+...+.+.|++.. ++|....+.|..|+. ..+.-+.||+.
T Consensus 289 L~stkpLl~S~n~sVVmA~aq----l~y~lAP~~~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~--~~~~lF~P~lK 361 (968)
T KOG1060|consen 289 LQSTKPLLQSRNPSVVMAVAQ----LFYHLAPKNQVTKIAKALVRLLRSNR-EVQYVVLQNIATISI--KRPTLFEPHLK 361 (968)
T ss_pred HHhccHHHhcCCcHHHHHHHh----HHHhhCCHHHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHh--cchhhhhhhhh
Confidence 111111111111111111100 01111111134455566666665432 555555555555554 23334444432
Q ss_pred ------------------------------hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc
Q 000098 1619 ------------------------------LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1619 ------------------------------~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~ 1668 (2256)
.+++.+.....+.+..+-..+.++||..+...+. .-+.++.+|+..+.+
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-v~~tCL~gLv~Llss 440 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-VTDTCLNGLVQLLSS 440 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-hhhHHHHHHHHHHhc
Confidence 3555666666677777888999999999988774 357899999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC
Q 000098 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2256)
Q Consensus 1669 ~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~-~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~ 1747 (2256)
.+.. +-..+...+-.++..-..++ .+++..+.+.+.. .-+..|.+.++++|..+..... ..++++-.+.+.+.
T Consensus 441 hde~-Vv~eaV~vIk~Llq~~p~~h-~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr----i~PDVLR~laksFs 514 (968)
T KOG1060|consen 441 HDEL-VVAEAVVVIKRLLQKDPAEH-LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR----IAPDVLRKLAKSFS 514 (968)
T ss_pred ccch-hHHHHHHHHHHHHhhChHHH-HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch----hchHHHHHHHHhhc
Confidence 6443 44555555555555433332 2244444444433 2567788889999988766432 34567777778888
Q ss_pred CCCHHHHHHHHHHHH
Q 000098 1748 DENESVRDAALGAGH 1762 (2256)
Q Consensus 1748 d~~~~VR~~Al~al~ 1762 (2256)
++.+.|+-..+....
T Consensus 515 ~E~~evKlQILnL~a 529 (968)
T KOG1060|consen 515 DEGDEVKLQILNLSA 529 (968)
T ss_pred cccchhhHHHHHhhh
Confidence 999889877655433
No 53
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.73 E-value=2.9e-07 Score=109.10 Aligned_cols=201 Identities=24% Similarity=0.330 Sum_probs=139.0
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 000098 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2256)
Q Consensus 1775 ~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2256)
.+.+.+.....+.+|..|..+++-+..++... .. ......+.+.+. .++..+.....
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~~----------------~~~~~~~~~~l~-----~~~~~i~~~l~ 63 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN--AP----------------EDFPPDFVECLR-----QLLDAIIKQLS 63 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B---------------------HHHHHHHH--------HHHHH-S-
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--Cc----------------cccHHHHHHHHH-----HhHHHHHHHHh
Confidence 34555555567889999999999998886421 00 000011222221 33445555667
Q ss_pred CCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhch-HHHHhhhcC
Q 000098 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLK 1933 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~l-lp~L~~~l~ 1933 (2256)
|....|...|+.+++.++...+..+.++++.+++.+++.+++++..+|..|..||..+++.++ +.+.+ .+.+..+..
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh
Confidence 776778889999999999999989999999999999999999999999999999999999776 23455 677778888
Q ss_pred CCChhhHHhHHHHHHHHHHhhC--hhhhHh--hHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh
Q 000098 1934 DPSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2256)
Q Consensus 1934 d~~~~vR~~a~~aL~eii~~~~--~~~l~~--~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~ 2000 (2256)
+.++.+|..++.++..++...+ ...+.. .++.+.+.+..++.|++++||++|..+|..+++.+|..+
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 9999999999999999998887 333332 357899999999999999999999999999998877643
No 54
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.70 E-value=8.5e-07 Score=100.79 Aligned_cols=353 Identities=16% Similarity=0.139 Sum_probs=207.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh---CcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~---g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
+..-++.|.+.|.+++ .....+|.+-...++..- +++.+..-.++|.+.+.+.+.......=+|.+++..++.+..
T Consensus 69 ~~~elp~lt~~l~SdD-ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 69 FYSELPQLTQQLFSDD-IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhhhhHHHHHHHhhhH-HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 3445677777776554 666666666666655422 122222335677777777433222233356677878877654
Q ss_pred cCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCCh--hHHHHHHHHHHH
Q 000098 1412 RLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW--RTKQSSVQLLGA 1484 (2256)
Q Consensus 1412 ~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w--~~R~~a~~~Lg~ 1484 (2256)
..-.-.+ ...+|.+++.+.+.+..||+.+.+|++.++...+.. .+ -..+.+++..+.+... ..-+.+...|..
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 3211111 246899999999999999999999999987654331 11 2345566655554433 444557788899
Q ss_pred HHhhC-hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhc
Q 000098 1485 MAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT 1563 (2256)
Q Consensus 1485 la~~~-p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~ 1563 (2256)
++.+. |..-...+...+|.|.+++...+++|-..||||+.-+...- +..++.++..
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~---------------------- 284 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDV---------------------- 284 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhc----------------------
Confidence 98875 33233456788999999999999999999999999887542 1222211110
Q ss_pred ccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1564 TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1564 ~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
.+.+-+...|.+++..+..-+...+|++..- .+...-.-.--..++.+..++.++...+|..++..+
T Consensus 285 ------------g~~~RLvElLs~~sa~iqtPalR~vGNIVTG-~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 285 ------------GIPGRLVELLSHESAKIQTPALRSVGNIVTG-SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred ------------CCcHHHHHHhcCccccccCHHHHhhcCeeec-CccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 0112233333333333333334445555431 111000001123566777778899899999999999
Q ss_pred HHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc-H-h---HH--HHHHHHHHHhccCCCHHH
Q 000098 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-T-V---YF--EHILPDIIRNCSHQRASV 1712 (2256)
Q Consensus 1644 ~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g-~-~---~l--~~ll~~ll~~l~~~~~~v 1712 (2256)
+.+...-.++ .-..++|.|+..|.. .++..+..|+++++....+.- . + |+ ..++..+...+.-.+..+
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki 430 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence 8876432222 123578888888876 567789999999888765432 1 1 11 234444444443333334
Q ss_pred HHHHHHHHHHhHh
Q 000098 1713 RDGYLTLFKYLPR 1725 (2256)
Q Consensus 1713 R~~al~~l~~La~ 1725 (2256)
-+-++.++.++.+
T Consensus 431 iev~LD~~eniLk 443 (526)
T COG5064 431 IEVALDAIENILK 443 (526)
T ss_pred hhhhHHHHHHHHh
Confidence 4445666665544
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.68 E-value=5.3e-07 Score=102.38 Aligned_cols=305 Identities=15% Similarity=0.135 Sum_probs=199.8
Q ss_pred hHHHHHHHhccCC-ChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--h
Q 000098 1458 LVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--P 1533 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~-~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~ 1533 (2256)
.++|.+++.+++. .---...|..+|..++.+...+..... ...+|.++++|.+++..||..+.|||++++..-.. .
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 4578888888543 333456788899999988776643322 26789999999999999999999999999854221 1
Q ss_pred hH--HhHHHHHHhhhCCCCh---hHHHHHHHHHhc--ccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000098 1534 EI--ASLVPTLLMGLTDPND---HTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2256)
Q Consensus 1534 ~i--~~lv~~Ll~~l~d~~~---~vr~al~~L~~~--~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~ 1606 (2256)
++ -..+..++..+..... .+|.+-.+|.+. .--+.-+...+...+|++.+++...++++-..||-++..+...
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 11 1222333333332222 335544444331 1112233446778899999999999999999999999988762
Q ss_pred cCCCCcchhhhh-hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 000098 1607 VTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2256)
Q Consensus 1607 l~~~~~l~~~l~-~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~ 1681 (2256)
..+.+...++ .+++.|.+++.+++..++..+.+.+|.++..-... .--..++.+...|.+. ....|..+++.
T Consensus 274 --~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWT 350 (526)
T COG5064 274 --PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWT 350 (526)
T ss_pred --cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhhee
Confidence 2233333333 45678999999999999999999999998643322 1123556665556654 44689999999
Q ss_pred HHHHHHHhcHh---HH-HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhh--ChhHHHHH--HHHHHHHHHhcCCCCHHH
Q 000098 1682 LSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL--GVQFQNYL--QQVLPAILDGLADENESV 1753 (2256)
Q Consensus 1682 L~~i~~~~g~~---~l-~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~--g~~f~~yl--~~ilp~Ll~~L~d~~~~V 1753 (2256)
++.+-.+.... .+ ..++|.++..+...+...|..+|+++....... .++...|+ +.++.++.+.|.-.+..+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki 430 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence 99887655443 11 457888999998889999999999888654322 12333444 245566666665444344
Q ss_pred HHHHHHHHHHHH
Q 000098 1754 RDAALGAGHVLV 1765 (2256)
Q Consensus 1754 R~~Al~al~~iv 1765 (2256)
-+.++.+++.+.
T Consensus 431 iev~LD~~eniL 442 (526)
T COG5064 431 IEVALDAIENIL 442 (526)
T ss_pred hhhhHHHHHHHH
Confidence 455566665554
No 56
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.65 E-value=3e-05 Score=101.83 Aligned_cols=396 Identities=16% Similarity=0.149 Sum_probs=236.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HH
Q 000098 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQ 1420 (2256)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~ 1420 (2256)
++..|..++ ...=..++..|..+.....+... ...+.+.+...+.+. ++.+|+.++..++.+....+....... ..
T Consensus 43 lf~~L~~~~-~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSN-REQVELICDILKRLLSALSPDSL-LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcC-hHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 555555443 23334556667777776655443 236778888888876 789999988887777654332111111 35
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhH-----HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV-----LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~i-----lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2256)
+++.++.+++|++..|.+.|..++..++++-. +.+.+ ++.+...+...+-.+|.-.++++..++...++.+..
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88999999999999999999999999987533 23333 566666666556667777888899998887776544
Q ss_pred hh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-hhH--HhHHHHHHhhhCCCChhH--H-----HHHHHHHhcc
Q 000098 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEI--ASLVPTLLMGLTDPNDHT--K-----YSLDILLQTT 1564 (2256)
Q Consensus 1496 ~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~~i--~~lv~~Ll~~l~d~~~~v--r-----~al~~L~~~~ 1564 (2256)
.. .++++.++..+.+.+.-||..+++.+..++..-.. .++ ..+++.|.+.+.+..... + ..+...+...
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 33 25899999999999999999999999999983221 233 456666666665442221 1 1112222111
Q ss_pred cccC-CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc----hhhhhhhhHHHHHhhcCCCHHHHHHH
Q 000098 1565 FVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM----IPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2256)
Q Consensus 1565 ~~~~-~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l----~~~l~~Ll~~L~~~L~d~~~~VR~~a 1639 (2256)
.... .-....+.++..+.+.+.+.++..+..|..++|.++........+ .+-++.++..+.........++|..+
T Consensus 278 ~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~ 357 (503)
T PF10508_consen 278 RVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRA 357 (503)
T ss_pred hcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHH
Confidence 1110 001122344445556667788899999999999998743221111 12234455566666667778889888
Q ss_pred HHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 000098 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTL 1719 (2256)
Q Consensus 1640 ~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~ 1719 (2256)
..|++.+.....+..-+++.. +.+ ..-..++...... .++..++.|-+.+|.+++..
T Consensus 358 l~al~~il~~~~~~~~~~i~~-~~~-------------------~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~ 414 (503)
T PF10508_consen 358 LHALASILTSGTDRQDNDILS-ITE-------------------SWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRL 414 (503)
T ss_pred HHHHHHHHhcCCCCchHHHHH-HHH-------------------HHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHH
Confidence 888888875333222222221 000 0111111111111 45666777889999999988
Q ss_pred HHHhHhhh-ChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000098 1720 FKYLPRSL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1720 l~~La~~~-g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv 1765 (2256)
+..++... |...---.+.++..+++.-.+.+...++.=...+..++
T Consensus 415 l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 415 LQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 88777542 21111112344555555545555555544333344443
No 57
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=0.0044 Score=78.57 Aligned_cols=276 Identities=18% Similarity=0.269 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHhhhhH---hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh--------H--hhhhhhHH
Q 000098 1435 AVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ--------L--SQCLPKIV 1501 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~---~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~--------l--~~~L~~Iv 1501 (2256)
.+|..--.-.+.+...-++ ..+..-+...+..-.+.+|..-..|+..+-.++++.+.. + +..+..++
T Consensus 414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~ 493 (980)
T KOG2021|consen 414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE 493 (980)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence 4565543333333332222 223344444455556789999999999999999886532 1 12333455
Q ss_pred HHHHH--hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHH
Q 000098 1502 PKLTE--VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1502 p~L~~--~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
+.++. ++.++|+.|+-.-.+.+-+..+.+... ..-+|.++.+.-|+
T Consensus 494 ~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~------------------------------ 541 (980)
T KOG2021|consen 494 LLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDS------------------------------ 541 (980)
T ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccc------------------------------
Confidence 54443 456778877766555555544333210 11223333222221
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHH------------HHHHHHHHHHHHH
Q 000098 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE------------VRSVAARAIGSLI 1647 (2256)
Q Consensus 1580 ~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~------------VR~~a~~aL~~L~ 1647 (2256)
+++++.+..||..+......+.+.+. +.+.||.+.++..+...+..+.+. -+....+++|-+.
T Consensus 542 ---rglhn~ne~Vr~RawYLF~RfVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI 616 (980)
T KOG2021|consen 542 ---RGLHNKNENVRLRAWYLFTRFVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVII 616 (980)
T ss_pred ---hhccccccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEE
Confidence 45556666777777766666666542 345667777777666666322211 1112222333222
Q ss_pred Hhh--CcC----ch---------HHHHHHHHHHhhcCCCH----HHHHHHHHHHHHHHHHhcHh-----------HHHHH
Q 000098 1648 RGM--GEE----NF---------PDLVSWLLDALKSDNSN----VERSGAAQGLSEVLAALGTV-----------YFEHI 1697 (2256)
Q Consensus 1648 ~~~--g~~----~~---------~~lip~Ll~~L~~~~~~----~~R~~aa~~L~~i~~~~g~~-----------~l~~l 1697 (2256)
..- ..+ |. +..+..+...+.++.+. .....++.+++.+.+++... .+...
T Consensus 617 ~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ 696 (980)
T KOG2021|consen 617 TLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNI 696 (980)
T ss_pred eCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHH
Confidence 100 000 11 11222222223333222 13355677777777665321 35555
Q ss_pred HHHHHHhccC--CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC
Q 000098 1698 LPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2256)
Q Consensus 1698 l~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~ 1747 (2256)
++.++..+.- ....+|.+.-..++++-.++|++.-||+++.+..+++...
T Consensus 697 ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 697 LDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 5555444432 3567888888889999999999999999999998887654
No 58
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.0011 Score=83.55 Aligned_cols=237 Identities=14% Similarity=0.179 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
..++-+-++..++...+.||..|.-.+-.++-.++ +.+..-+|.+.+.|+|++..+.-+|+..+..+|...|+..-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 34677888889999999999999988888887776 45788899999999999999999999999999998887532
Q ss_pred hhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhcC-chhH-HhHHHHHHhhhCCCChh--HHHHHHHHHhcccccC--CC
Q 000098 1498 PKIVPKLTEVLTDTH-PKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNT--VD 1570 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~-~~VR~aA~~aL~~l~~~i~-~~~i-~~lv~~Ll~~l~d~~~~--vr~al~~L~~~~~~~~--~~ 1570 (2256)
.+-|.+++++.++. ..|- +..|.-|+...+ +|-+ +.++|.+.+.+...... +-+|+.+++....... ..
T Consensus 218 -~LAP~ffkllttSsNNWmL---IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWVL---IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred -cccHHHHHHHhccCCCeeh---HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 45677777776432 2222 223333333221 2444 67777777776543221 1256666655322222 34
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 000098 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2256)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~ 1650 (2256)
..+....+.-+..++.|.+++.|.-++.+++.++. +.++.+..|. ..+..+|.|.++.+|..|...+-.++.
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs-- 365 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS-- 365 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh--
Confidence 45666777778888899999999999999998887 3444444443 456678899999999888877777664
Q ss_pred CcCchHHHHHHHHHHhhcCCC
Q 000098 1651 GEENFPDLVSWLLDALKSDNS 1671 (2256)
Q Consensus 1651 g~~~~~~lip~Ll~~L~~~~~ 1671 (2256)
++.+.+++..||..+...+.
T Consensus 366 -kkNl~eIVk~LM~~~~~ae~ 385 (877)
T KOG1059|consen 366 -KKNLMEIVKTLMKHVEKAEG 385 (877)
T ss_pred -hhhHHHHHHHHHHHHHhccc
Confidence 45677888888887665433
No 59
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00033 Score=88.83 Aligned_cols=379 Identities=14% Similarity=0.126 Sum_probs=227.1
Q ss_pred CHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH-HHHHHHHHHc
Q 000098 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAF 1429 (2256)
Q Consensus 1351 ~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~-~llp~ll~~l 1429 (2256)
+...+.+--.-++.++++.. . ....|.+.+++..+ |.+++.-...-+-.-++.-.+ +. --+..+-..+
T Consensus 49 d~~KleAmKRIia~iA~G~d---v--S~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpd-----LALLSIntfQk~L 117 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAKGKD---V--SLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPD-----LALLSINTFQKAL 117 (968)
T ss_pred cHHHHHHHHHHHHHHhcCCc---H--HHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCC-----ceeeeHHHHHhhh
Confidence 33333333344455555432 1 14667777777665 777776543322222222111 10 0134556789
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh
Q 000098 1430 SDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2256)
Q Consensus 1430 ~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L 1508 (2256)
+|+++-+|-.|..++..|- -..+ +.++-.+-+...|.+..+|+.|..++..+....|++- ++++..+-.+|
T Consensus 118 ~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k----~qL~e~I~~LL 189 (968)
T KOG1060|consen 118 KDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK----DQLEEVIKKLL 189 (968)
T ss_pred cCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH----HHHHHHHHHHh
Confidence 9999999988877765541 1112 3334455567789999999999999999888777763 26666677789
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHh---cccc------------------
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQ---TTFV------------------ 1566 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~---~~~~------------------ 1566 (2256)
.|..|.|-.+|..|+..+|..-- ..+..-...+++.+.|-++.-+ -.+..|.. +.+.
T Consensus 190 aD~splVvgsAv~AF~evCPerl-dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~ 268 (968)
T KOG1060|consen 190 ADRSPLVVGSAVMAFEEVCPERL-DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNL 268 (968)
T ss_pred cCCCCcchhHHHHHHHHhchhHH-HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccc
Confidence 99999999999999888763200 1123333444555544432111 11222211 1111
Q ss_pred ---------cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHH
Q 000098 1567 ---------NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637 (2256)
Q Consensus 1567 ---------~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~ 1637 (2256)
++...+.+..++.....++.++++.|-.+++++.-.++-- .+ ...+...|..+|. .++.+|.
T Consensus 269 ~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~----~~----~~~i~kaLvrLLr-s~~~vqy 339 (968)
T KOG1060|consen 269 KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK----NQ----VTKIAKALVRLLR-SNREVQY 339 (968)
T ss_pred cccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH----HH----HHHHHHHHHHHHh-cCCcchh
Confidence 1122345566666667778888988888888777666531 11 2345566666555 4678899
Q ss_pred HHHHHHHHHHHhhCcCchHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHH
Q 000098 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2256)
Q Consensus 1638 ~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~-~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~a 1716 (2256)
....++..++..-.. -+.|++....- +.+...+..--.+-|+.++. ......+++.+.....+.+..+-..+
T Consensus 340 vvL~nIa~~s~~~~~----lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~---esni~~ILrE~q~YI~s~d~~faa~a 412 (968)
T KOG1060|consen 340 VVLQNIATISIKRPT----LFEPHLKSFFVRSSDPTQVKILKLEILSNLAN---ESNISEILRELQTYIKSSDRSFAAAA 412 (968)
T ss_pred hhHHHHHHHHhcchh----hhhhhhhceEeecCCHHHHHHHHHHHHHHHhh---hccHHHHHHHHHHHHhcCchhHHHHH
Confidence 999999988864322 12233322221 21222233223333444443 23456677777777778777788888
Q ss_pred HHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Q 000098 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2256)
Q Consensus 1717 l~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~ 1769 (2256)
+.++|..+...+. .-+..+..++..+...++.|-..+.-.++.+++.-.
T Consensus 413 V~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 413 VKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 9999998888776 445677788888888788777777777777766433
No 60
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.61 E-value=0.0089 Score=78.02 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=119.3
Q ss_pred ccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch----hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchh
Q 000098 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL 2145 (2256)
Q Consensus 2070 ~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~ 2145 (2256)
+++..|.|.+.+.+...+...|..-..++..++.+++. +.++.++|.|++++.=+|..+|..+..++..+....+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 57889999999999877778899999999999998754 56889999999999999999999999999999888887
Q ss_pred hhhhhHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHhhhhhh
Q 000098 2146 YLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206 (2256)
Q Consensus 2146 ~~~~y~~~il~~L~~~l~D~d---~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~~~~d~ 2206 (2256)
-...|+..+++.++.+=.|.| ..||..|..||+.+...+|...+-.+.|.+.+++...-|+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD 1006 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD 1006 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc
Confidence 788899999999998877776 6899999999999999999887777878777776655544
No 61
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.60 E-value=1.3e-06 Score=114.29 Aligned_cols=277 Identities=16% Similarity=0.211 Sum_probs=196.4
Q ss_pred cchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhc
Q 000098 1253 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 1332 (2256)
Q Consensus 1253 ~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~ 1332 (2256)
-.+++++..++..... . ..|-+|+++|..++.+++.+ -++..++|-++..+.|+...||..+...|..++....
T Consensus 421 ~l~vs~lts~IR~lk~---~--~tK~~ALeLl~~lS~~i~de-~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 421 VLFVSVLTSCIRALKT---I--QTKLAALELLQELSTYIDDE-VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred eeeHHHHHHHHHhhhc---c--hhHHHHHHHHHHHhhhcchH-HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 3456667666654211 1 35678999999999887654 4688899999999999999999888887766665442
Q ss_pred C-------chHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 000098 1333 D-------EAPTLVSRLLDQLMKS-DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG-LADRNSAKRREGALLAF 1403 (2256)
Q Consensus 1333 ~-------~~~~~l~~Ll~~L~~~-~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~-l~~~~~~~~Re~al~al 1403 (2256)
+ -+++|+-..+..|..+ ....+|..-|.+|+.+++..- ........+.++ +.+..+.+
T Consensus 495 ~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse--------- 561 (1431)
T KOG1240|consen 495 DIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE--------- 561 (1431)
T ss_pred CCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc---------
Confidence 2 2577777777777776 556789999999999887531 111222222222 11211111
Q ss_pred HHHHHHhc-cCchHh----HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHH
Q 000098 1404 ECLCEKLG-RLFEPY----VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQS 1477 (2256)
Q Consensus 1404 ~~L~~~l~-~~~~py----v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~ 1477 (2256)
+.+ ..++.+ +..+-..+...+.|+.+.||.+-.+.+..++..++...- +.+|+.++.+|.|++|+-|.+
T Consensus 562 -----t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~a 636 (1431)
T KOG1240|consen 562 -----TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGA 636 (1431)
T ss_pred -----cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHH
Confidence 000 112222 222334555678899999999999999999988887654 678999999999999999998
Q ss_pred HHHHHHHHHhhChhh-HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh--cCchhHHhHHHHHHhhhCCCChhHH
Q 000098 1478 SVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNPEIASLVPTLLMGLTDPNDHTK 1554 (2256)
Q Consensus 1478 a~~~Lg~la~~~p~~-l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--i~~~~i~~lv~~Ll~~l~d~~~~vr 1554 (2256)
=.+-+..++...+.+ .+ .-++|.+.+.|.|.++-|-..|..++..+++. ++.+.+.+++......+..|+..+|
T Consensus 637 FfdsI~gvsi~VG~rs~s---eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR 713 (1431)
T KOG1240|consen 637 FFDSIVGVSIFVGWRSVS---EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIR 713 (1431)
T ss_pred HHhhccceEEEEeeeeHH---HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHH
Confidence 777776666655544 33 25789999999999999999999999999874 5566777778888888888988887
Q ss_pred HH
Q 000098 1555 YS 1556 (2256)
Q Consensus 1555 ~a 1556 (2256)
.+
T Consensus 714 ~~ 715 (1431)
T KOG1240|consen 714 RA 715 (1431)
T ss_pred HH
Confidence 54
No 62
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.0089 Score=76.56 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=75.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHH--------HHHHhhcCC-CCC
Q 000098 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGY-DFG 1129 (2256)
Q Consensus 1059 ~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~--------~~~w~~~~~-~~~ 1129 (2256)
+.+.|++..|||..|++-||++|++-... |.....+-.++ ..+++|-.+|=+| ...|+.+.. .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq-----PGF~~~L~sI~-l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ-----PGFFSKLYSIF-LSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC-----CcHHHHHHHHH-hccccceeeeeehhhhHhcchhHHhhcCCcccCC
Confidence 45789999999999999999999854321 33334445554 5566666655553 448876432 333
Q ss_pred C----Ch-HhHHHhhcCCCHHHHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHH
Q 000098 1130 T----DY-SGLFKALSHSNYNVRLAAAEALATALD-----EYPDSIQGSLSTLFSL 1175 (2256)
Q Consensus 1130 ~----~~-~~ll~~l~~~~~~vR~~aa~ala~~~~-----~~~~~~~~~l~~L~~~ 1175 (2256)
+ .+ ..++.....++..+-...|.+++.+++ +||+.++++++.|.+.
T Consensus 76 ~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~ 131 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSS 131 (978)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHh
Confidence 2 23 667777778899999999999999986 3555555555555544
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00062 Score=87.11 Aligned_cols=303 Identities=16% Similarity=0.196 Sum_probs=200.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2256)
+...+-+-++.++..|.-.|..+++.++ +++....+.|.+.+.+...+..+|+-|+.|.-.+....|+..+ .+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----Hh
Confidence 4455555677777888777777777664 5666788999999999999999999999999999988888764 45
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc-----cccCCChhh
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT-----FVNTVDAPS 1573 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~-----~~~~~~~~~ 1573 (2256)
++...+.|.|.|+-|-.++..-+..+++.-.+ .+++.+++.|...+.+- .... -++.+..|.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l-----------~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQL-----------TNSGYSPEYDVHGISDPF 249 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-----------hcCCCCCccCccCCCchH
Confidence 66677889999999988888888888875322 24566777666655321 1101 133455666
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
++.-+-.+.+.+...+++....-..+++.++......+.... ..+-.++...+. +++...|..|+.+||.+...-..
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~Gn--AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGN--AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDN 327 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchh--HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcc
Confidence 666565667777766666666666777777764221122111 123344444443 57788999999999988753221
Q ss_pred CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH
Q 000098 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1653 ~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~ 1732 (2256)
..----+..|+..++.+++...|.. ..++..++|++..+|.-++.+.-.+...
T Consensus 328 NirYvaLn~L~r~V~~d~~avqrHr---------------------~tIleCL~DpD~SIkrralELs~~lvn~------ 380 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQRHR---------------------STILECLKDPDVSIKRRALELSYALVNE------ 380 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHHHH---------------------HHHHHHhcCCcHHHHHHHHHHHHHHhcc------
Confidence 1111235566666666665544433 3577888999999999998877666543
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
..+..++..++..|...+++.+.....-+..+++.|++
T Consensus 381 ~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 381 SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 24445666666777666778887776667777777765
No 64
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.4e-05 Score=96.60 Aligned_cols=280 Identities=21% Similarity=0.222 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCC
Q 000098 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPS 1313 (2256)
Q Consensus 1234 ~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~ 1313 (2256)
..++.+..-+-..||.+ ....+...|.+ . .++.+|.+++.-+|-.+ +...+ .++.+.+-+.|...+
T Consensus 397 GGalyAlGLIhA~hG~~----~~~yL~~~Lk~-~----~~e~v~hG~cLGlGLa~--mGSa~---~eiYe~lKevLy~D~ 462 (929)
T KOG2062|consen 397 GGALYALGLIHANHGRG----ITDYLLQQLKT-A----ENEVVRHGACLGLGLAG--MGSAN---EEIYEKLKEVLYNDS 462 (929)
T ss_pred cchhhhhhccccCcCcc----HHHHHHHHHHh-c----cchhhhhhhhhhccchh--ccccc---HHHHHHHHHHHhccc
Confidence 44555544444445554 44455555554 2 23478999887777544 33323 456677777665544
Q ss_pred HHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCH
Q 000098 1314 EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393 (2256)
Q Consensus 1314 ~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~ 1393 (2256)
.-.-+++.-.++-++ .+....+.+..|+.--.+.+...+.|+-+.+++.++-+... +.=+.+.+++.++ |+
T Consensus 463 AvsGEAAgi~MGl~m--lGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe------~Ad~lI~el~~dk-dp 533 (929)
T KOG2062|consen 463 AVSGEAAGIAMGLLM--LGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE------DADPLIKELLRDK-DP 533 (929)
T ss_pred hhhhhHHHHhhhhHh--hCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh------hhHHHHHHHhcCC-ch
Confidence 333333333333222 24445667777776655555566778888888877655422 3344566666666 89
Q ss_pred HHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc-CCCh
Q 000098 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAW 1472 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~-~~~w 1472 (2256)
-.|.++++++..--.+-|. ..-+..+++. ..+|.+++||.+|..+++-+.-.- +..+|..++.|. +-+.
T Consensus 534 ilR~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 534 ILRYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNP 603 (929)
T ss_pred hhhhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcCh
Confidence 9999888765443333332 2233444443 478999999999999998775332 345677777776 5689
Q ss_pred hHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhhhCCC
Q 000098 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~---~~~i~~lv~~Ll~~l~d~ 1549 (2256)
.+|.++..+||-.+.+.+.. .-+..|-.+..|+..-||+.|+-++.-+.-... +|.+..+...+.+.+.|.
T Consensus 604 HVRyGaA~ALGIaCAGtG~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhhhhHHHHHhhhhcCCCcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 99999999999777654433 334445567789999999999999887764433 245566666777777766
Q ss_pred Chh
Q 000098 1550 NDH 1552 (2256)
Q Consensus 1550 ~~~ 1552 (2256)
.+.
T Consensus 678 hEd 680 (929)
T KOG2062|consen 678 HED 680 (929)
T ss_pred hhH
Confidence 553
No 65
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.4e-05 Score=91.97 Aligned_cols=339 Identities=16% Similarity=0.118 Sum_probs=215.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHh-hh
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QC 1496 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~-~~ 1496 (2256)
...++..+...++.+..++..+++.++-+....++ -.+-+.+.+++.+. -.++..++.++-.++........ ..
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhh
Confidence 34445566777788888888888877665554432 12223445555543 33444556677666655322211 12
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhhhCCCChhHHH-HHHHHHhc--c-cccCC
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDHTKY-SLDILLQT--T-FVNTV 1569 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~d~~~~vr~-al~~L~~~--~-~~~~~ 1569 (2256)
. .-+..+..+-+..+..||+.+..+|.++.....+. .+ ..-+|.|...+...+..++. |..++..+ + -....
T Consensus 166 s-GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 S-GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred c-cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 2 23334556667788999999999999998765443 22 45678888888766665552 33333221 0 00111
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
...+-+.++|.+...+.+.++.++-.|..++++++.- ......-.-..-+|.+..+++++.-..-.+...|+..++-.
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 1223456899999999999999999999999999862 21111112234578888999988777767777788777655
Q ss_pred hCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH-HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 000098 1650 MGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2256)
Q Consensus 1650 ~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l-~~ll~~ll~~l~~~~~~vR~~al~~l~~ 1722 (2256)
-+.+ .-..++..|...|.-.++.+.+..+...+-.+....... .+ ...+|.++..+.|..-.+++..-.|+..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 4433 113466667777776555556777777666665433222 11 4578889999889888888877777776
Q ss_pred hHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1723 LPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1723 La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
++-. +.+..++ ..++|.++....+++.+||..+..|+..+..
T Consensus 403 Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 403 LALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 6643 3333333 2578888888899999999998888776643
No 66
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=2.1e-05 Score=90.57 Aligned_cols=339 Identities=19% Similarity=0.163 Sum_probs=207.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCcccch--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHH
Q 000098 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 1423 (2256)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~--~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp 1423 (2256)
+..+.+..+...+..+++.++-..+...+. -..+-+.+.+++.+. ..++-.++.++..++..-.....---...+.
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~--vevqcnaVgCitnLaT~d~nk~kiA~sGaL~ 170 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG--VEVQCNAVGCITNLATFDSNKVKIARSGALE 170 (550)
T ss_pred HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC--cEEEeeehhhhhhhhccccchhhhhhccchh
Confidence 334556788889999999888766543321 124445667777664 2334344455555554321111100111233
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh--H-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC--hhhHhhhhh
Q 000098 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA--PQQLSQCLP 1498 (2256)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~--v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~--p~~l~~~L~ 1498 (2256)
.+...-+..+..||..+..++-.+........ + ..-+|.+++.+.+.+..+++.++.+++.++-.. .+.+...=|
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 33345556677888877777766543322211 1 345899999999999999999999999988653 345666667
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhhhCCCChh-HHHHHHHHHhcccccCCChh--
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDH-TKYSLDILLQTTFVNTVDAP-- 1572 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~d~~~~-vr~al~~L~~~~~~~~~~~~-- 1572 (2256)
.++|.++.++.|++++|+-.|..+|+.++..-.-. ++ ..-+|.+.+.+++|.-. +-+.+..+.+. .+|...+.
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni-sihplNe~lI 329 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI-SIHPLNEVLI 329 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc-ccccCcccce
Confidence 89999999999999999999999999998642210 11 34568888888888532 22222222111 11111110
Q ss_pred hHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1573 SLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d-~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g 1651 (2256)
.-+.++.-+.+.++- .+.+.+-.|...+.+++... ....-.-.-..-+|.+..++.|....+|.....|+..++-.-.
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 011233335555553 45678888889998888621 2111111234578899999999999999999999998875322
Q ss_pred cC-ch--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 000098 1652 EE-NF--PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2256)
Q Consensus 1652 ~~-~~--~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2256)
.. ++ ..++|.|+....+ .+.++|-.++.+++.+....
T Consensus 409 ~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred cHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhh
Confidence 11 11 1244555444444 55668888888888876543
No 67
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=0.012 Score=74.74 Aligned_cols=362 Identities=15% Similarity=0.120 Sum_probs=212.7
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHH
Q 000098 1333 DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFEC 1405 (2256)
Q Consensus 1333 ~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~-------~~~~~~~Re~al~al~~ 1405 (2256)
.+..+++.+-++...+...+. .+|+.++-.+....+...+. ++++++...+. +.+++...+||+..+..
T Consensus 367 nDp~eyirry~df~d~g~spd--laal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~las 442 (970)
T COG5656 367 NDPDEYIRRYYDFFDNGLSPD--LAALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLAS 442 (970)
T ss_pred cCHHHHHHHhcchhcCCCChh--HHHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHH
Confidence 445677777776554443332 34555555555555544443 78888877662 23578888999999999
Q ss_pred HHHHhc--cCchHhHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHH
Q 000098 1406 LCEKLG--RLFEPYVIQ-MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2256)
Q Consensus 1406 L~~~l~--~~~~pyv~~-llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~ 1481 (2256)
+..... ..++..+.. ++++++..+.++.-..|..+++.+..+...++..++ -.........+.+.+.-++..|..+
T Consensus 443 i~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalA 522 (970)
T COG5656 443 IKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALA 522 (970)
T ss_pred HHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 888433 233333443 578888899999999999888888888555555444 4566666777888888888888888
Q ss_pred HHHHHhhC--hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHH-HHHHhhcCc--hhH-HhHHH----HHHhhhCCCCh
Q 000098 1482 LGAMAYCA--PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVP----TLLMGLTDPND 1551 (2256)
Q Consensus 1482 Lg~la~~~--p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL-~~l~~~i~~--~~i-~~lv~----~Ll~~l~d~~~ 1551 (2256)
+.-+.... .+.++.+.|..+..++.+-++-+.++-..+.+++ +.+.+.+.+ +++ ..++. .....+.++++
T Consensus 523 lq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d 602 (970)
T COG5656 523 LQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSD 602 (970)
T ss_pred HHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 88777653 3446778888888888887776666655544443 444444431 122 33333 33334444421
Q ss_pred ---hHH----HHHHHHHhc-----cc--ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1552 ---HTK----YSLDILLQT-----TF--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1552 ---~vr----~al~~L~~~-----~~--~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
.+. .|...|..+ ++ ...+.......+.|.+.=.+.+.-.+.-+.|+.++....-.. +++.|..
T Consensus 603 ~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pim 679 (970)
T COG5656 603 TSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIM 679 (970)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhh
Confidence 111 122222210 11 111111122334555555556655677777888876654322 3455666
Q ss_pred hhhhHHHHHhhcCCCH-HHHHHHHHHHHHHHHhhCcC------chHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHh
Q 000098 1618 GLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAAL 1689 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~-~VR~~a~~aL~~L~~~~g~~------~~~~lip~Ll~~L~~~~~-~~~R~~aa~~L~~i~~~~ 1689 (2256)
..+...+.+++.++.. .--+.++-++..+...-+.+ |...+.......+.++.+ -.++.++++-+-.++-.+
T Consensus 680 wgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~ 759 (970)
T COG5656 680 WGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNI 759 (970)
T ss_pred hHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHc
Confidence 6666777777776653 44556677777777644333 333445555555555433 235666666666666666
Q ss_pred cHhHHHHHHHHH
Q 000098 1690 GTVYFEHILPDI 1701 (2256)
Q Consensus 1690 g~~~l~~ll~~l 1701 (2256)
+.+.+++.+|.+
T Consensus 760 rd~Ll~qy~plf 771 (970)
T COG5656 760 RDELLSQYLPLF 771 (970)
T ss_pred cchhHHhhhHHH
Confidence 665555555533
No 68
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0046 Score=79.58 Aligned_cols=316 Identities=17% Similarity=0.204 Sum_probs=188.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhccCchHhHHHHH
Q 000098 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR---NSAKRREGALLAFECLCEKLGRLFEPYVIQML 1422 (2256)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~---~~~~~Re~al~al~~L~~~l~~~~~pyv~~ll 1422 (2256)
|..+++...+|-...+...++..- .+++-.+...++++ .+.-+.- +|+..++..++ ......+.
T Consensus 78 Lias~~f~dKRiGYLaamLlLdE~-------qdvllLltNslknDL~s~nq~vVg---lAL~alg~i~s---~Emardla 144 (866)
T KOG1062|consen 78 LIASDNFLDKRIGYLAAMLLLDER-------QDLLLLLTNSLKNDLNSSNQYVVG---LALCALGNICS---PEMARDLA 144 (866)
T ss_pred HhcCCCchHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhccCCCeeehH---HHHHHhhccCC---HHHhHHhh
Confidence 445555555554444444444321 24444555444332 1222333 33334433333 23456788
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHH
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp 1502 (2256)
|.+...++..++.||+.|..|+.++....+ +.++.+++...+.|.+++.-+-.+++..+-.|++..|+.+. ++..++|
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~ 222 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVP 222 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHH
Confidence 888888899999999999999988887655 45688888888999998888888888899999988776543 3344555
Q ss_pred HHHHhhcC---------------CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHH-hhhC--CCChhHH-----HHHHH
Q 000098 1503 KLTEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEIASLVPTLL-MGLT--DPNDHTK-----YSLDI 1559 (2256)
Q Consensus 1503 ~L~~~L~D---------------~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll-~~l~--d~~~~vr-----~al~~ 1559 (2256)
.++..|++ ++|-.+-...+.|+-+++. ++...+.+..++ +... |.+..+- +|+.+
T Consensus 223 ~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 223 SLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 44443321 2456666666666666653 223322222222 2221 1111111 23333
Q ss_pred HHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHH
Q 000098 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2256)
Q Consensus 1560 L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a 1639 (2256)
+..+ ....+-.-.-+.++-+++..++-++|..+...+..... .++..+..|- ..+..+++|++..+|..|
T Consensus 301 I~~I----~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~--~d~~avqrHr----~tIleCL~DpD~SIkrra 370 (866)
T KOG1062|consen 301 IMDI----RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ--QDPTAVQRHR----STILECLKDPDVSIKRRA 370 (866)
T ss_pred HHhc----cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc--CCcHHHHHHH----HHHHHHhcCCcHHHHHHH
Confidence 2211 11111222334555666666666666666665555544 2443333333 366778899999999998
Q ss_pred HHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1640 ~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
++..-.++. +.....++..|+..|.+. +...+...+..+.++++.+.++
T Consensus 371 lELs~~lvn---~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 371 LELSYALVN---ESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHhc---cccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 888777765 345677888888888875 5557888888888888888765
No 69
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.39 E-value=0.043 Score=75.39 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHh--ccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCC
Q 000098 1394 KRREGALLAFECLCEKL--GRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDK 1470 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~l--~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~ 1470 (2256)
..++.+.+.+..++... ...|.+|+. .++..++.+...+|..|..|+..++..-+.--. +.+...+...+.|.
T Consensus 792 ~d~~~a~li~~~la~~r~f~~sfD~yLk----~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 792 ADDDDAKLIVFYLAHARSFSQSFDPYLK----LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDS 867 (1692)
T ss_pred ccchhHHHHHHHHHhhhHHHHhhHHHHH----HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccc
Confidence 34555666666665543 344555554 556677889999999999999988764432211 45666667778899
Q ss_pred ChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-hhHHhHHHHHHhhhCCC
Q 000098 1471 AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1471 ~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~~i~~lv~~Ll~~l~d~ 1549 (2256)
+-.+|.+|++++|...-+.|+...+++. .+.+...|+...||+.+.+.+..++...++ +.+..+.-.++....|.
T Consensus 868 sasVREAaldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDE 943 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccc
Confidence 9999999999999998888876655544 455678899999999999999999986543 23345555666667776
Q ss_pred ChhHH
Q 000098 1550 NDHTK 1554 (2256)
Q Consensus 1550 ~~~vr 1554 (2256)
...+.
T Consensus 944 Eg~I~ 948 (1692)
T KOG1020|consen 944 EGNIK 948 (1692)
T ss_pred hhHHH
Confidence 65454
No 70
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.38 E-value=2.4e-06 Score=84.32 Aligned_cols=93 Identities=27% Similarity=0.369 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhH
Q 000098 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2256)
Q Consensus 1395 ~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2256)
.|.+++.++..++.+++....+|+..++|.++.++.|++..||..|.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEa------------------------------- 50 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEA------------------------------- 50 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH-------------------------------
Confidence 5788999999999988877888888888888888777766666655544
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2256)
|..++......+-.++++|++.+..++.|+++.||.+| +.|.++
T Consensus 51 -------L~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 51 -------LYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 44455555555566889999999999999999999887 444444
No 71
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00093 Score=84.22 Aligned_cols=247 Identities=16% Similarity=0.192 Sum_probs=141.1
Q ss_pred cHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Q 000098 1690 GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2256)
Q Consensus 1690 g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~ 1769 (2256)
..+.-+.+-+.++..+++..+.+|.-++-++-.+..-.++.+.| .+|-+..-|.|+++.|..+|...++.+...-.
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~----~FprL~EkLeDpDp~V~SAAV~VICELArKnP 213 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP----CFPRLVEKLEDPDPSVVSAAVSVICELARKNP 213 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCC
Confidence 34455778889999999999999998887777666555554433 45778888999999999999888888765433
Q ss_pred ccchhchHHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHH
Q 000098 1770 TTSLPLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2256)
Q Consensus 1770 ~~~~~~llp~L~~~l~d--~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~ 1847 (2256)
. .+-.+-|.+-+.|.+ .||-+ ...+.++|.+. . +-..|| ..++.
T Consensus 214 k-nyL~LAP~ffkllttSsNNWmL-IKiiKLF~aLt----p------------------------lEPRLg----KKLie 259 (877)
T KOG1059|consen 214 Q-NYLQLAPLFYKLLVTSSNNWVL-IKLLKLFAALT----P------------------------LEPRLG----KKLIE 259 (877)
T ss_pred c-ccccccHHHHHHHhccCCCeeh-HHHHHHHhhcc----c------------------------cCchhh----hhhhh
Confidence 2 233366777666643 56743 12233344331 0 000111 11222
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHH
Q 000098 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2256)
Q Consensus 1848 ~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~ 1927 (2256)
.|...... ..|++.+ -+++.+++.. .+.+..++.-..+ .-.+..
T Consensus 260 plt~li~s------T~AmSLl-----------YECvNTVVa~---s~s~g~~d~~asi----------------qLCvqK 303 (877)
T KOG1059|consen 260 PITELMES------TVAMSLL-----------YECVNTVVAV---SMSSGMSDHSASI----------------QLCVQK 303 (877)
T ss_pred HHHHHHHh------hHHHHHH-----------HHHHHHheee---hhccCCCCcHHHH----------------HHHHHH
Confidence 22221111 1111211 1112222111 0000000000111 111223
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHH
Q 000098 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2256)
Q Consensus 1928 L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2256)
|..++.|.+++.|.-.|.+++.+..... ..+ ..--..+.++|.|.|+.+|-.|... ++..+....+.+++..
T Consensus 304 Lr~fiedsDqNLKYlgLlam~KI~ktHp-~~V----qa~kdlIlrcL~DkD~SIRlrALdL---l~gmVskkNl~eIVk~ 375 (877)
T KOG1059|consen 304 LRIFIEDSDQNLKYLGLLAMSKILKTHP-KAV----QAHKDLILRCLDDKDESIRLRALDL---LYGMVSKKNLMEIVKT 375 (877)
T ss_pred HhhhhhcCCccHHHHHHHHHHHHhhhCH-HHH----HHhHHHHHHHhccCCchhHHHHHHH---HHHHhhhhhHHHHHHH
Confidence 3445567789999999999988765433 222 3345677889999999999876544 4444556778889999
Q ss_pred HHHhhccCCch
Q 000098 2008 LLHALEDDQTS 2018 (2256)
Q Consensus 2008 Ll~~L~~~~~~ 2018 (2256)
|+..+...+.+
T Consensus 376 LM~~~~~ae~t 386 (877)
T KOG1059|consen 376 LMKHVEKAEGT 386 (877)
T ss_pred HHHHHHhccch
Confidence 99888765543
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00082 Score=86.49 Aligned_cols=461 Identities=17% Similarity=0.189 Sum_probs=253.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcch-HHHH
Q 000098 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV-HAVV 1302 (2256)
Q Consensus 1224 ~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i-~~il 1302 (2256)
++.+...+-|..++.-..+.+.. | .-+..++|-+.+++.. .+ . ..+.-+-.-+...|. ..|.. ...+
T Consensus 21 ~l~s~~~~kr~~a~kkvIa~Mt~-G-~DvSslF~dvvk~~~T---~d-l--elKKlvyLYl~nYa~----~~P~~a~~av 88 (734)
T KOG1061|consen 21 QLNSQSKEKRKDAVKKVIAYMTV-G-KDVSSLFPDVVKCMQT---RD-L--ELKKLVYLYLMNYAK----GKPDLAILAV 88 (734)
T ss_pred HhhhhhhhhHHHHHHHHHhcCcc-C-cchHhhhHHHHhhccc---CC-c--hHHHHHHHHHHHhhc----cCchHHHhhh
Confidence 44444445555555444433332 3 2245555655555432 11 1 233333333333332 22222 2345
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHH
Q 000098 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~ 1382 (2256)
..++....++++.+|..+...+..+ .-+...+++-.-+....+++++.+|+.++.+.+.+-..- ++......+++.
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l---~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-~~~~~~~gl~~~ 164 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCL---RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-PDLVEDSGLVDA 164 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeE---eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-hhhccccchhHH
Confidence 6667788899999987554432211 112233333333334445667899999999988776543 333334578999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hHHhH
Q 000098 1383 LREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLV 1459 (2256)
Q Consensus 1383 L~~~l~~~~~~~~Re~al~al~~L~~~l~~-~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v~~i 1459 (2256)
+.+++.|+ ++.+-..|+-++..|.+.-.. ..-....++...++..+.+-+..-+-... +.+....+++ ....+
T Consensus 165 L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL---~~l~~y~p~d~~ea~~i 240 (734)
T KOG1061|consen 165 LKDLLSDS-NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFIL---DCLAEYVPKDSREAEDI 240 (734)
T ss_pred HHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHH---HHHHhcCCCCchhHHHH
Confidence 99999866 788888888888888876532 11122234455555555443333332222 2233333332 23456
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv 1539 (2256)
+..+...+.+.+..+-.++...+-......+......+..+-|.++.++... +++...+..-+..+.....+ .+..-+
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~-~e~qyvaLrNi~lil~~~p~-~~~~~~ 318 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSE-SEIQYVALRNINLILQKRPE-ILKVEI 318 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeeccc-chhhHHHHhhHHHHHHhChH-HHHhHh
Confidence 6666666666666555566666666655544422233445555555544433 37766666665555443221 111111
Q ss_pred HHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000098 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2256)
Q Consensus 1540 ~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~ 1619 (2256)
..+.-...||- -++..-.+++..++. + .-+++
T Consensus 319 ~~Ff~kynDPi----------------------------------------YvK~eKleil~~la~---~-----~nl~q 350 (734)
T KOG1061|consen 319 KVFFCKYNDPI----------------------------------------YVKLEKLEILIELAN---D-----ANLAQ 350 (734)
T ss_pred HeeeeecCCch----------------------------------------hhHHHHHHHHHHHhh---H-----hHHHH
Confidence 11111112221 112122223333332 1 12445
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHH
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~ 1699 (2256)
++..+.....+-+.+.-..+.+|+|.++....+. ..+++.|++.+....++. -..+...+-.+.+.+...+ +.+++
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~yv-vqE~~vvi~dilRkyP~~~-~~vv~ 426 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDYV-VQEAIVVIRDILRKYPNKY-ESVVA 426 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccce-eeehhHHHHhhhhcCCCch-hhhhh
Confidence 6666667777777777778999999999877655 789999999888655553 2334444555555444332 55666
Q ss_pred HHHHhccC-CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1700 DIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1700 ~ll~~l~~-~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
.+.....+ .+|..|.+.++.+|..+..+.+. ..++..+++...|+...|+..-+.|.-.
T Consensus 427 ~l~~~~~sl~epeak~amiWilg~y~~~i~~a-----~elL~~f~en~~dE~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 427 ILCENLDSLQEPEAKAALIWILGEYAERIENA-----LELLESFLENFKDETAEVQLELLTAAIK 486 (734)
T ss_pred hhcccccccCChHHHHHHHHHHhhhhhccCcH-----HHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 55555544 37889999999999988887663 3567778888888887777655544333
No 73
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=0.051 Score=73.23 Aligned_cols=778 Identities=16% Similarity=0.165 Sum_probs=366.7
Q ss_pred hcchHhHHHHHHhhhhhcccCCCCCCcchHhHHHHHHHHHcCCC-CCCchhhHHHHH------HhhcCC-----CCCCcH
Q 000098 955 NKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPK-RTGLHDDVLQML------YKHMDP-----LLPLPR 1022 (2256)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~-----~~~~~~ 1022 (2256)
.|....++.+-.||+... .-.-=++.++..++=++..-..+-. .......-|+.+ +.|+.. -..+--
T Consensus 190 ~e~flsl~~~~~yrllEn-~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~ 268 (1251)
T KOG0414|consen 190 DEDFLSLIVDPIYRLLEN-EHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGS 268 (1251)
T ss_pred HHHHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456788899999998876 2223356666666666655443311 111122223333 333311 012233
Q ss_pred HHHHHHHHHHHcc------ccchHHHHHHHHHHHHhcCC---hHHHHHHHhhhcCCChhHHHHHHHhhhcCCccc--CCC
Q 000098 1023 LRMISVLYHVLGV------VPSYQAAIGSALNELCLGLQ---PNEVASALHGVYTKDVHVRMACLNAVKCIPAVS--TRS 1091 (2256)
Q Consensus 1023 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~--~~~ 1091 (2256)
.+++..++.-++. .+...|.....|.+++.-+. -.++..++.-+=+..-..|.+.++.+-+..... +.+
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e 348 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEE 348 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh
Confidence 4555555555542 23345556677777776443 345666666344455558988888776543110 001
Q ss_pred C-C----chhhhhhhhhhhccCCcHHHHHHHHHHHhhcC--CCCC----CCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1092 L-P----ENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYG--YDFG----TDY-SGLFKALSHSNYNVRLAAAEALATALD 1159 (2256)
Q Consensus 1092 ~-~----~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~--~~~~----~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~ 1159 (2256)
. + ....+...+---.+|...-+|.-+-++|..+- ...+ +.+ ...+.-+.+.+.-||+.|.+.+..++.
T Consensus 349 ~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 349 LEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 0 0 00112333333447778888888888887621 1112 222 334445668899999999999999998
Q ss_pred hCCCcHH---HHHHHHHHHHHhhcC----CCCC-CCCCCcchhHHHHHHHHHhhhh----hccC------ChhHhHHHHH
Q 000098 1160 EYPDSIQ---GSLSTLFSLYIRDIG----LGGD-NVDAGWLGRQGIALALHSAADV----LRTK------DLPVIMTFLI 1221 (2256)
Q Consensus 1160 ~~~~~~~---~~l~~L~~~~~~~~~----~~~~-~~~~~~~~R~~~~~aL~~l~~~----~~~~------~~~~l~~~lv 1221 (2256)
.+|-... ..+..-.+-|..++. +... ..++.-..|......+-.-++- ...+ ..+.. ..+-
T Consensus 429 ~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~-~~~~ 507 (1251)
T KOG0414|consen 429 RHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEH-CLLE 507 (1251)
T ss_pred cCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchhh-hhhh
Confidence 8874221 111112222322221 1100 0011111222111111000000 0000 00000 0110
Q ss_pred H--hhcCCCCHHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcc
Q 000098 1222 S--RALADTNADVRGRMLNAGIMIIDKHG--RDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297 (2256)
Q Consensus 1222 ~--~~l~D~~~~VR~~a~~a~~~~i~~~g--~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~ 1297 (2256)
. ....+.+.-++..+ ..++....- .+.+..-+|++.++|..... + .|.+ +++++. .|..++-+.
T Consensus 508 ~~~~s~~~~~~i~q~~~---~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~---t--eV~E-~Idfl~-~c~~F~I~g-- 575 (1251)
T KOG0414|consen 508 NEVESVPAENEIMQLKA---LVQFLEDAISFSDEMSEAIPIISQLLFSKTT---T--EVKE-AIDFLV-RCKQFGIDG-- 575 (1251)
T ss_pred hhhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh---H--HHHH-HHHHHH-HHHHhCCCc--
Confidence 0 11111122222222 121111110 12355667888888765211 1 3433 666663 455443221
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc
Q 000098 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-E----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS 1372 (2256)
Q Consensus 1298 i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~----~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~ 1372 (2256)
-+.-+.+|+.....++.++++++..|-..+.-.... . ...++..|+..+. +.+.+.+.+--+.|..++..-.++
T Consensus 576 ae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~-~~s~~d~~slE~vl~~lv~~~~Id 654 (1251)
T KOG0414|consen 576 AEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLI-DASIGDLTSLEEVLCELVARGYID 654 (1251)
T ss_pred HHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHhCCCcc
Confidence 344567777766677777999888887666543321 1 1334555555443 333455555555555555533222
Q ss_pred cchhhcHHHHHHHHH--hCCC-CHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-
Q 000098 1373 SLKKYGIAATLREGL--ADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM- 1448 (2256)
Q Consensus 1373 ~~~~~~il~~L~~~l--~~~~-~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~- 1448 (2256)
..++..|.+.. +.+. ....+.+++..++.++.+...........++. -.++++. .-..+......++
T Consensus 655 ----~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~---iglg~p~--l~~~~L~~~s~i~~ 725 (1251)
T KOG0414|consen 655 ----AAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQ---IGLGEPR--LAVDVLARYSNIVD 725 (1251)
T ss_pred ----HHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHH---hccCcHH--HHHHHHHHHHHhhc
Confidence 24555555544 1111 22344677777777776654433333332222 1344421 1111111111111
Q ss_pred -hhh-----------hH-hhHHhHHHHHHHh--cc-CCChh-HHHHHHHHHHHHHhhChhhHhhh-----hhhHHHHHH-
Q 000098 1449 -SQL-----------SA-QGVKLVLPSLLKG--LE-DKAWR-TKQSSVQLLGAMAYCAPQQLSQC-----LPKIVPKLT- 1505 (2256)
Q Consensus 1449 -~~l-----------~~-~~v~~ilp~Ll~~--L~-~~~w~-~R~~a~~~Lg~la~~~p~~l~~~-----L~~Ivp~L~- 1505 (2256)
+.. +. +.+-+.+..++-+ .. +++|. +...++.++-.++. .|+.+... .......+.
T Consensus 726 ~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~-~Pe~la~~li~~~~~~~f~~~~~ 804 (1251)
T KOG0414|consen 726 PRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM-LPEVLATQLIRKLLKQDFESLEC 804 (1251)
T ss_pred ccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhhhhh
Confidence 111 00 1111223333222 22 44675 45557777777765 46554331 111111111
Q ss_pred H---hhcCCCHHHHHHHHHHHHH-HHhhcCc------hhHHhHHHHHHhh---------hCCCChhHHHHHHHHHh-ccc
Q 000098 1506 E---VLTDTHPKVQSAGQTALQQ-VGSVIKN------PEIASLVPTLLMG---------LTDPNDHTKYSLDILLQ-TTF 1565 (2256)
Q Consensus 1506 ~---~L~D~~~~VR~aA~~aL~~-l~~~i~~------~~i~~lv~~Ll~~---------l~d~~~~vr~al~~L~~-~~~ 1565 (2256)
+ ...|++..--..-++.+.. +...++. .+++.-++...+. -++.+. ++-+..-.. +.+
T Consensus 805 E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~~~~~e~k~~N~--~e~~s~t~~~~~~ 882 (1251)
T KOG0414|consen 805 EADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIKTELEEKKDKNQ--RENLSNTQRETQF 882 (1251)
T ss_pred hhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc--hhhhccccccccC
Confidence 0 0111111000000111111 1111111 1222222211110 000000 000000000 000
Q ss_pred ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh---hcCCCCcchhhhhhhhHHHHHhhc----CCCHHHHHH
Q 000098 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS---LVTEPKDMIPYIGLLLPEVKKVLV----DPIPEVRSV 1638 (2256)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~---~l~~~~~l~~~l~~Ll~~L~~~L~----d~~~~VR~~ 1638 (2256)
-... ......+.+.- ...+.-+|+ +.++ ...+..+.|.+...++ -.+|++|.+
T Consensus 883 ~~e~-------------dlig~tseDd~---~d~i~~icE~eLl~ge----k~lLg~f~piv~e~c~n~~~~sdp~Lq~A 942 (1251)
T KOG0414|consen 883 TVEL-------------DLIGGTSEDDL---ADLISGICEKELLYGE----KSLLGRFAPIVVEGCRNPGLFSDPELQAA 942 (1251)
T ss_pred Cccc-------------cccCCCcchhH---HHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHhcCCCcCCCHHHHHH
Confidence 0000 00011111111 112222222 1111 1234556666666664 356999999
Q ss_pred HHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 000098 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718 (2256)
Q Consensus 1639 a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~ 1718 (2256)
|.-|++.+.- +..+|...-+|.|+..+...+++.+|+.+..++|++.-.+. ..+++.-+.+...+.|+++.||..++.
T Consensus 943 AtLaL~klM~-iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fp-nlie~~T~~Ly~rL~D~~~~vRkta~l 1020 (1251)
T KOG0414|consen 943 ATLALGKLMC-ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP-NLIEPWTEHLYRRLRDESPSVRKTALL 1020 (1251)
T ss_pred HHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcc-cccchhhHHHHHHhcCccHHHHHHHHH
Confidence 9999998864 33456677889999999888888899999999999876553 346777888999999999999999999
Q ss_pred HHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCC
Q 000098 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND 1787 (2256)
Q Consensus 1719 ~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~ 1787 (2256)
.+..+-..---.. ..-++.+-.++.|+++.+|+.|..-+..+... + ..+=.++|.+...+.|.
T Consensus 1021 vlshLILndmiKV----KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k-~-n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1021 VLSHLILNDMIKV----KGQLSEMALCLEDPNAEISDLAKSFFKELSSK-G-NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHhhhhHh----cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc-c-cchhhhchHHHHhhccC
Confidence 8887654322221 22345667788999999998877666555332 1 23334667776666553
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.31 E-value=3.2e-06 Score=83.46 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhhhCCCC
Q 000098 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~Ll~~l~d~~ 1550 (2256)
.|++++.+|.+++...++.+..+++.|+|.++.++.|++++||..||++|.+++++.++. ++.++++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 589999999999999999999999999999999999999999999999999999988764 45889999999999999
Q ss_pred hhHHHHHHHH
Q 000098 1551 DHTKYSLDIL 1560 (2256)
Q Consensus 1551 ~~vr~al~~L 1560 (2256)
+.+|.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 9888654443
No 75
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0017 Score=83.82 Aligned_cols=425 Identities=17% Similarity=0.196 Sum_probs=235.8
Q ss_pred hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1454 ~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
.++..++|.+++.....+-..|+..-.-+...+...|..-. ..++.++.-+.|++|.+|.-|.+.++.+.- +.
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~ 117 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI----LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DK 117 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----hhhhhhhccCCCCCHHHHHHHhhceeeEee---hH
Confidence 55667788888777766677777666666666666555422 234555666777788888777666554321 01
Q ss_pred hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000098 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2256)
Q Consensus 1534 ~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l 1613 (2256)
... .+..-+.++++|.++.+|+.++..+.++... ++...
T Consensus 118 i~e---------------------------------------y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~ 156 (734)
T KOG1061|consen 118 ITE---------------------------------------YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLV 156 (734)
T ss_pred HHH---------------------------------------HHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhhc
Confidence 112 2233455666777778888877777777653 21111
Q ss_pred hhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc----CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 000098 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2256)
Q Consensus 1614 ~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~----~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2256)
+-..+++.|..++.|.+|.|-..|..++..+.+.-.. .....++..+++.+....+|. +. ..+.......
T Consensus 157 --~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~-qi---~IL~~l~~y~ 230 (734)
T KOG1061|consen 157 --EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWG-QI---FILDCLAEYV 230 (734)
T ss_pred --cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhh-HH---HHHHHHHhcC
Confidence 2345788888999999999999999999999875432 133566777777776654442 22 2233333333
Q ss_pred cHh--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000098 1690 GTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2256)
Q Consensus 1690 g~~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~ 1767 (2256)
..+ -...++..+...+++.++.|-.++...+-.+...+..--..++.++-|+++..+..+. .+.-.+++-...++..
T Consensus 231 p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK 309 (734)
T ss_pred CCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence 332 2456777777778888887777777777766665555333466777788888777665 6666666666655543
Q ss_pred hhccchhchHHHHHh-hc--CCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHH
Q 000098 1768 YATTSLPLLLPAVED-GI--FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2256)
Q Consensus 1768 ~~~~~~~~llp~L~~-~l--~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~ 1844 (2256)
... ++..-.. .. .++.-.+...-++.+..+. ..+..++
T Consensus 310 ~p~-----~~~~~~~~Ff~kynDPiYvK~eKleil~~la----------------------------------~~~nl~q 350 (734)
T KOG1061|consen 310 RPE-----ILKVEIKVFFCKYNDPIYVKLEKLEILIELA----------------------------------NDANLAQ 350 (734)
T ss_pred ChH-----HHHhHhHeeeeecCCchhhHHHHHHHHHHHh----------------------------------hHhHHHH
Confidence 321 1100000 00 0111112222222222221 1112233
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhch
Q 000098 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI 1924 (2256)
Q Consensus 1845 vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~l 1924 (2256)
++..+.....+.+.+.-..++.+++.++...... ..+++.+++.+ .-.-.-+-+.+...+..+.+++...+ +.+
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell----~~~~~yvvqE~~vvi~dilRkyP~~~-~~v 424 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELL----ETKVDYVVQEAIVVIRDILRKYPNKY-ESV 424 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHH----hhcccceeeehhHHHHhhhhcCCCch-hhh
Confidence 4444544445555554555556666555544333 44555555544 21112223334555566666655443 555
Q ss_pred HHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHH
Q 000098 1925 IPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRES 1984 (2256)
Q Consensus 1925 lp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~ 1984 (2256)
++.+...+..- +|+.|....|-+++-..... ....++..+.+.+.|+...|+-.
T Consensus 425 v~~l~~~~~sl~epeak~amiWilg~y~~~i~------~a~elL~~f~en~~dE~~~Vql~ 479 (734)
T KOG1061|consen 425 VAILCENLDSLQEPEAKAALIWILGEYAERIE------NALELLESFLENFKDETAEVQLE 479 (734)
T ss_pred hhhhcccccccCChHHHHHHHHHHhhhhhccC------cHHHHHHHHHhhcccchHHHHHH
Confidence 55555444322 46677777776665544332 12345555566666666666543
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.29 E-value=0.0013 Score=85.03 Aligned_cols=318 Identities=18% Similarity=0.202 Sum_probs=191.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-----CchHhHHH-HHHHHHHHcC-----CC--cHHHHHHHHHHHHHHH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGR-----LFEPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAARAMM 1448 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~-----~~~pyv~~-llp~ll~~l~-----D~--~~~VR~aa~~al~~l~ 1448 (2256)
.+......+.+...-...+.++..+.+.... ...-|... ++|.++...- +. ++.+=+.+...+..++
T Consensus 46 kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv 125 (415)
T PF12460_consen 46 KLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIV 125 (415)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHH
Confidence 3333333333445555556666666554432 12344443 6666665432 11 2556666677777788
Q ss_pred hhhhHhhHHhHHHHHHHhcc----------CCC---hhHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHhh-cCCCH
Q 000098 1449 SQLSAQGVKLVLPSLLKGLE----------DKA---WRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVL-TDTHP 1513 (2256)
Q Consensus 1449 ~~l~~~~v~~ilp~Ll~~L~----------~~~---w~~R~~a~~~Lg~la~~~p~~l-~~~L~~Ivp~L~~~L-~D~~~ 1513 (2256)
..++.+.-..++..+...+. +.. +..+.. +..+..+..+.++.. .+....++..++... +..++
T Consensus 126 ~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~ 204 (415)
T PF12460_consen 126 RSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRL-VILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDE 204 (415)
T ss_pred HhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccH-HHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCCh
Confidence 88877654444544443322 122 222332 233333333333332 224456777776664 34458
Q ss_pred HHHHHHHHHHHHHHhhcCch-hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHH
Q 000098 1514 KVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAET 1592 (2256)
Q Consensus 1514 ~VR~aA~~aL~~l~~~i~~~-~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~v 1592 (2256)
..|..+++++..+...+.+. .++.++..+...... ......
T Consensus 205 ~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~--------------------------------------~~~~~~ 246 (415)
T PF12460_consen 205 FSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS--------------------------------------SEDSEL 246 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc--------------------------------------cCCcch
Confidence 89999999999888765433 345555544443310 011122
Q ss_pred HHHHHHHHHHHhhhc--CCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC----------------cCc
Q 000098 1593 KKKAAQIVGNMCSLV--TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG----------------EEN 1654 (2256)
Q Consensus 1593 R~~a~~~l~~L~~~l--~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g----------------~~~ 1654 (2256)
|..+..++.++.+.+ .. .|....++..+...+.| +.+...++++++.+..... ..+
T Consensus 247 ~~~~~~~~~Wi~KaLv~R~----~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 247 RPQALEILIWITKALVMRG----HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred hHHHHHHHHHHHHHHHHcC----CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 222333333333211 11 12333455556666666 6677788888887765421 125
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
|..++|.+++...+..+. .|.....+++.+++....+ .++.++|-+++.+.-++..++.+++.++..+.....+-
T Consensus 321 F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 788999999988874433 6777788999999988876 56789999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 000098 1731 FQNYLQQVLPAILDG 1745 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~ 1745 (2256)
+.+|++.++|.+++.
T Consensus 400 i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 400 ISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999998864
No 77
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.28 E-value=0.0043 Score=76.10 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=49.1
Q ss_pred ccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch-hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000098 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFY 2140 (2256)
Q Consensus 2070 ~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~-~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~ 2140 (2256)
.|+..|++.++- .+.-+|..|..|+.++.....+ ...+.+...|..++.|.+.++|--|..++..+-
T Consensus 487 ~yvrhIyNR~iL----EN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLIL----ENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHH----hhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 466666666543 3567899999999998887644 445666667777788888999998888887763
No 78
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.26 E-value=0.00099 Score=85.99 Aligned_cols=275 Identities=19% Similarity=0.217 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc-----c-CCChhhhhhhhhHHHHHHHHHHhhhccC--CcchHHH
Q 000098 1230 ADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK-----K-ASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHAV 1301 (2256)
Q Consensus 1230 ~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~-----~-~~~~~~~~~vr~~av~~L~~La~~l~~~--~~~i~~i 1301 (2256)
+.+-..+...+..++...+.+.-+.++..+..++.. + ..............+..+..+-..++++ -|....+
T Consensus 111 ~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~l 190 (415)
T PF12460_consen 111 DRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEEL 190 (415)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHH
Confidence 667777777777777777665555555444443320 0 0000000001122334444444445443 2456677
Q ss_pred HHHHHHH-cCCCCHHHHHHHHHhhHHhHHhhc--CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccch-hh
Q 000098 1302 VDKLLDV-LNTPSEAVQRAVSSCLSPLMQSMQ--DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY 1377 (2256)
Q Consensus 1302 l~~Ll~~-L~~~~~~Vq~~~~~~L~~lv~~~~--~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~-~~ 1377 (2256)
+..++.. +...++..+..+++++..++.++. +...+.+..+...+........|..+...+..+.+++=...-+ -.
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~ 270 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT 270 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH
Confidence 8888774 455568888899999999998863 3356667766666633334567788888887777765211111 11
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc--------Cc-----hHhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGR--------LF-----EPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~--------~~-----~pyv~~llp~ll~~l~D~~~~VR~aa~~al 1444 (2256)
.+.+.+.+.+.+ +.....+..+|+.+....+. .. ..+...++|.+++.+.+.+...|..-..|+
T Consensus 271 ~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 271 ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 466666666654 55677778888888765221 11 123557899999999988888888889999
Q ss_pred HHHHhhhhHhh----HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh
Q 000098 1445 RAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507 (2256)
Q Consensus 1445 ~~l~~~l~~~~----v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~ 1507 (2256)
..+.+++|..- ++.++|.+++.++-++...+.++++.|..+....|+.+..++..++|.+++.
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 99999988754 4789999999999899999999999999999999999999999999998763
No 79
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.26 E-value=0.014 Score=71.88 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh-hChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Q 000098 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2256)
Q Consensus 1693 ~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~-~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~ 1771 (2256)
.+.++.|.+-..+.+.-.-|-..+...+..++.. .|++ +++..+..+-..|..+.-..|-.|++.+.++...+..
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~---~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~- 336 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQ---FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ- 336 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-
Confidence 4555666666666665555655566666655543 3655 4566667777777777777888888888887665543
Q ss_pred chhchHHHHHhhcCCCCHHHHHHHH
Q 000098 1772 SLPLLLPAVEDGIFNDNWRIRQSSV 1796 (2256)
Q Consensus 1772 ~~~~llp~L~~~l~d~~~~iR~~sv 1796 (2256)
.+..--+.++..+.|.|..+..-++
T Consensus 337 kv~vcN~evEsLIsd~Nr~IstyAI 361 (898)
T COG5240 337 KVSVCNKEVESLISDENRTISTYAI 361 (898)
T ss_pred eeeecChhHHHHhhcccccchHHHH
Confidence 2333446677777777665544443
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.25 E-value=0.081 Score=72.91 Aligned_cols=147 Identities=19% Similarity=0.197 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH
Q 000098 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1654 ~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~-l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~ 1732 (2256)
.|+.++..++..+. ++...+|..|..+++.++..=..-. ...+...+-..+.|....||++++.++|....+..+
T Consensus 813 sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--- 888 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--- 888 (1692)
T ss_pred hhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH---
Confidence 35667777777777 4667799999999999876432211 144556677788899999999999999977766655
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc-chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~-~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
+..+....+...+.|+.-.||..+.+.++.|+..+.+- -+..+...+.....|+.-.|..-+.+.+-.+.|.
T Consensus 889 -~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 889 -LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred -HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 44455566777888999999999999999998766532 2333455555566777777888888888888764
No 81
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.19 E-value=3.9e-05 Score=102.35 Aligned_cols=342 Identities=17% Similarity=0.206 Sum_probs=221.1
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHH
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~--~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2256)
.+..+...+.-..+..-..++.++-.++...|... ...++ +.+..+. +..+|..+...+.++.+..|.......
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~-~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~ 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI-KHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc-ccCcccc---ccccchhhcccchhhhhhcCCCcCccc
Confidence 34455555555666666777888888888777431 11222 2222222 334788888888888877776521111
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHH--------HH
Q 000098 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE---NESVRDAALGAGHVL--------VE 1766 (2256)
Q Consensus 1698 l~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~---~~~VR~~Al~al~~i--------v~ 1766 (2256)
.+......++.+....|.....+..+--+.......++ +..-+......+... .+
T Consensus 175 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d 240 (815)
T KOG1820|consen 175 --------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPID 240 (815)
T ss_pred --------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCcc
Confidence 13334444555555555433223222222233333222 211111111100000 00
Q ss_pred Hhh----ccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhh
Q 000098 1767 HYA----TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2256)
Q Consensus 1767 ~~~----~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~ 1842 (2256)
++. .+..+.+-+.+...+.+++|+-|.++++-+...+....+ . -.. ...
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~-~---------~~~-----------------~~~ 293 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKK-E---------IVK-----------------GYT 293 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhcccc-c---------ccc-----------------Ccc
Confidence 110 112344667888889999999999999988887632110 0 000 001
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchh
Q 000098 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922 (2256)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~ 1922 (2256)
+.+...+-....|.+..|-..++..+..++...+..+.++....++.+++.+.+....+|.....++..++. ...+.
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~ 370 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---STPLS 370 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHH
Confidence 111222233468999999999999999999999888999999999999999999999999999999988887 33467
Q ss_pred chHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhh-HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhH
Q 000098 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2256)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l-~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~ 2001 (2256)
.+.+.+..++.+.+|..|.....++...+...++... ..-.+.++|.+....+|.+.+||.+|..+++.+++.+|...+
T Consensus 371 ~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 371 KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7788888899999999999988888888887774322 334578999999999999999999999999999999998776
Q ss_pred HhHHHHHH
Q 000098 2002 DEIVPTLL 2009 (2256)
Q Consensus 2002 ~~ilp~Ll 2009 (2256)
..++..+-
T Consensus 451 ~k~L~~~~ 458 (815)
T KOG1820|consen 451 KKLLKDLD 458 (815)
T ss_pred HHHHHhhc
Confidence 65555433
No 82
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.13 Score=72.49 Aligned_cols=292 Identities=18% Similarity=0.210 Sum_probs=190.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHhh
Q 000098 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2256)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~~ 1965 (2256)
..+...+..+++..|-.+.++++.++...++. +...+.....+.+.+. ++..|.+...+++.+-+..|.-.-.+++.+
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 33455667889999999999999999998876 5677777777767654 688899999999999888876544567788
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhchhh---HHhHHHHHHHhhccCCch-HHHHHHHHHHHhhhcccchhhh
Q 000098 1966 LIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHI 2040 (2256)
Q Consensus 1966 li~~l~~~L~D~~~-~VR~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~-~~al~~L~~il~~~~~~~lp~l 2040 (2256)
-+..+....+|+.. .|+..+..++..+....|+.. +...+..++..|-+.... .....++. +.+.|
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~-------R~~~~-- 1029 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYN-------RCFNG-- 1029 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhc-------ccccc--
Confidence 88888888899876 999999999998888777643 333333333444332211 00011111 11111
Q ss_pred hhhhhcCchhhhHHHHHHHHHHHhCCCccccHh---------hHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc-chhcH
Q 000098 2041 LPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG---------TILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DEEGV 2110 (2256)
Q Consensus 2041 i~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~---------~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~-~~~~~ 2110 (2256)
-...+++..+.|+.+.+... ..+-...-.+.+++..+...+.+|+..+-... ..-..
T Consensus 1030 -------------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~ 1096 (2067)
T KOG1822|consen 1030 -------------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL 1096 (2067)
T ss_pred -------------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH
Confidence 01233455555655554332 12222222235567788899999999998754 34668
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHH--------------------HHHHHHcC-CCChHH
Q 000098 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMI--------------------STLIVLLS-DSDSTT 2169 (2256)
Q Consensus 2111 ~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il--------------------~~L~~~l~-D~d~~V 2169 (2256)
+.+++.+...+.+.-.-.|.+++.++..+.++.......|...+. ..++.+++ ..|...
T Consensus 1097 ~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l 1176 (2067)
T KOG1822|consen 1097 DSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKL 1176 (2067)
T ss_pred HHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHH
Confidence 999999999998887778888888888876654333333322221 12334444 346778
Q ss_pred HHHHHHHHHHhhccCCCCchhchHHHHHHHHh
Q 000098 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2170 r~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
+++...++.++...+-.+.+..++-.....+.
T Consensus 1177 ~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~ 1208 (2067)
T KOG1822|consen 1177 LKNILETLSRMLNSLADELLSSWLMLLKDLLQ 1208 (2067)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 89999999997666655656666665555555
No 83
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.17 E-value=4.8e-05 Score=101.49 Aligned_cols=364 Identities=16% Similarity=0.182 Sum_probs=222.2
Q ss_pred chHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC
Q 000098 1254 LLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333 (2256)
Q Consensus 1254 ~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~ 1333 (2256)
.+++....+|..+. ..+|+....++..+... + + +...+..++..++-..+..-..++.++..++..++.
T Consensus 63 ~l~~~~~~~l~~~~------~~~~~~~~~~~~~i~~~-~--~--~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~ 131 (815)
T KOG1820|consen 63 QLLSFGLKCLDSKR------VNIRDTKTQSLLRIGKL-E--D--IKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGK 131 (815)
T ss_pred eeccchhhhccccc------ccccCcchhHHHHHHHh-h--h--hHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcC
Confidence 45666666766431 13455555555555321 1 1 345566666655555544445566777778776643
Q ss_pred ch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1334 EA--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1334 ~~--~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
.. ...+...+..+. +.++|..+...+..+.+..|...... +. +..+...++.+....|
T Consensus 132 p~~~~~~~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~--~~---------------~~~~~~l~~~~~~~~~ 191 (815)
T KOG1820|consen 132 PKVPSKAFIKHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPL--LF---------------KASAPGLMGKLGSYQG 191 (815)
T ss_pred CCCccccccccCcccc---ccccchhhcccchhhhhhcCCCcCcc--cc---------------hhhhHHHHHHHHhhcc
Confidence 21 122222233333 56899999999999998888655431 10 1112222233333333
Q ss_pred cCchHhHHHHHHHHHHHcC---CCc---------HHHHHHHH-HHH-HHHHhhhhHhhH-HhHHHHHHHhccCCChhHHH
Q 000098 1412 RLFEPYVIQMLPLLLVAFS---DQV---------VAVREAAE-CAA-RAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQ 1476 (2256)
Q Consensus 1412 ~~~~pyv~~llp~ll~~l~---D~~---------~~VR~aa~-~al-~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~ 1476 (2256)
.....+..+--+....... |++ ..++.... .+. ..-...++..++ ..+-+.+...+.+.+|..|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~ 271 (815)
T KOG1820|consen 192 KSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRK 271 (815)
T ss_pred ccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHH
Confidence 2211111111111111111 111 11111110 000 000111222333 56667777888899999999
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHH-HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhhhCCCChh
Q 000098 1477 SSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDH 1552 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Iv-p~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~Ll~~l~d~~~~ 1552 (2256)
.|++.+....+.........+..++ ..+...+.|.+..|-..++.+|..++..++.. +...+.|.++..+.+....
T Consensus 272 Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~ 351 (815)
T KOG1820|consen 272 EALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSE 351 (815)
T ss_pred HHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHH
Confidence 9999999988876633333333343 33444578999999999999999999988754 4578889999999887766
Q ss_pred HHH----HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh
Q 000098 1553 TKY----SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2256)
Q Consensus 1553 vr~----al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L 1628 (2256)
+|+ +++..++ .-.+..+.+.+..++++.++..|..+...+.......+.......-...++|.+....
T Consensus 352 l~d~l~~~~d~~~n--------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~ 423 (815)
T KOG1820|consen 352 LRDALLKALDAILN--------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHI 423 (815)
T ss_pred HHHHHHHHHHHHHh--------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhc
Confidence 664 4444433 2245668899999999999999999888887777654322233445678899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcCchH
Q 000098 1629 VDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2256)
Q Consensus 1629 ~d~~~~VR~~a~~aL~~L~~~~g~~~~~ 1656 (2256)
+|.+..||.++..+++.+...+|++.+.
T Consensus 424 ~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 424 NDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999976333
No 84
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0016 Score=81.31 Aligned_cols=245 Identities=18% Similarity=0.193 Sum_probs=159.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000098 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2256)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~ 1817 (2256)
....+.....|.+..||..|.+++-.+-+.+ ..-........+.+.|++..+|.++++++--+....++... .
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e-----~ 271 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE-----R 271 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc-----c
Confidence 3344667778889999999999877765422 22223555667788999999999999998877644332110 0
Q ss_pred CCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHH-HHHH--------
Q 000098 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMN-------- 1888 (2256)
Q Consensus 1818 ~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~-~Ll~-------- 1888 (2256)
..++ . ...+.++..+|....|.++.||-.|...++.+-......+.+.+. .++.
T Consensus 272 e~~e---------~--------kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a 334 (823)
T KOG2259|consen 272 ESEE---------E--------KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA 334 (823)
T ss_pred hhhh---------h--------hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc
Confidence 0000 0 122467788888899999999998888887765433322222111 1222
Q ss_pred ------------------------------------------HHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHH
Q 000098 1889 ------------------------------------------TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2256)
Q Consensus 1889 ------------------------------------------~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp 1926 (2256)
.++..+.|.-+++|.+|...++.++.. .+.+-..-+.
T Consensus 335 hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~ald 413 (823)
T KOG2259|consen 335 HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVRALD 413 (823)
T ss_pred ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 122333444567899998888888753 3345667778
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH
Q 000098 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006 (2256)
Q Consensus 1927 ~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp 2006 (2256)
.|.+.++|+...+|..+..++..|..... .-++.++.+.+++.|.+.+||++.-..+... +......++-.+.
T Consensus 414 fLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 414 FLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVA 486 (823)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHH
Confidence 88888998888999999998887765421 1245677888889999999998776554432 2223345555666
Q ss_pred HHHHhhcc
Q 000098 2007 TLLHALED 2014 (2256)
Q Consensus 2007 ~Ll~~L~~ 2014 (2256)
.|+..|..
T Consensus 487 ~lL~~L~k 494 (823)
T KOG2259|consen 487 HLLKNLGK 494 (823)
T ss_pred HHHHHhhh
Confidence 66766654
No 85
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.13 Score=66.06 Aligned_cols=286 Identities=21% Similarity=0.218 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHH
Q 000098 1634 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713 (2256)
Q Consensus 1634 ~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR 1713 (2256)
.-.-.|+-|+|.|-...|.+ +...|.+.|++.+...+|.+++-++|-.. +|.. -.++...+...+...+.-.-
T Consensus 394 y~EGGalyAlGLIhA~hG~~----~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGSa-~~eiYe~lKevLy~D~AvsG 466 (929)
T KOG2062|consen 394 YKEGGALYALGLIHANHGRG----ITDYLLQQLKTAENEVVRHGACLGLGLAG--MGSA-NEEIYEKLKEVLYNDSAVSG 466 (929)
T ss_pred ccccchhhhhhccccCcCcc----HHHHHHHHHHhccchhhhhhhhhhccchh--cccc-cHHHHHHHHHHHhccchhhh
Confidence 33446777888777655544 67777788888777888999888776543 3322 12344445555544444444
Q ss_pred HHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHH
Q 000098 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792 (2256)
Q Consensus 1714 ~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~-~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR 1792 (2256)
+++...+|-+...... .+.+.-++....+. ++.+..+..-.+. + -.|+.. ...-|.+.+.+.|.+.-+|
T Consensus 467 EAAgi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RGl~vGia-L-~~ygrq--e~Ad~lI~el~~dkdpilR 536 (929)
T KOG2062|consen 467 EAAGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRGLAVGIA-L-VVYGRQ--EDADPLIKELLRDKDPILR 536 (929)
T ss_pred hHHHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHHHHHhHH-H-HHhhhh--hhhHHHHHHHhcCCchhhh
Confidence 4554444433322111 22333333333332 2333222111111 1 122221 1122444455566677777
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH-HhcCCcHHHHHHHHHHHHHH
Q 000098 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAALHVWKTI 1871 (2256)
Q Consensus 1793 ~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~-~~~D~~~~Vr~aA~~~l~~l 1871 (2256)
...+-.++-- +.-+| .+.++..|.. ..+|.+..||.+|.-.++-+
T Consensus 537 ~~Gm~t~alA-y~GTg---------------------------------nnkair~lLh~aVsD~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 537 YGGMYTLALA-YVGTG---------------------------------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFV 582 (929)
T ss_pred hhhHHHHHHH-HhccC---------------------------------chhhHHHhhcccccccchHHHHHHHHHheee
Confidence 7655443321 11000 1122333333 37899999999999988866
Q ss_pred HhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHH
Q 000098 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2256)
Q Consensus 1872 ~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii 1951 (2256)
.-..|..+ |..+..+. .+-|+.+|..++-+||-.|...|.. ..+..|.....|+..-+||++|.+++-|+
T Consensus 583 l~~dp~~~----~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 583 LFRDPEQL----PSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred EecChhhc----hHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 65555433 33444332 4568999999999999998766654 33444555556777789999999999888
Q ss_pred HhhChhhhHhhHhhHHHHHHHHhcCCCHHH
Q 000098 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEV 1981 (2256)
Q Consensus 1952 ~~~~~~~l~~~l~~li~~l~~~L~D~~~~V 1981 (2256)
..+.+ .+.|-...+...+.+.+.|.++++
T Consensus 653 ~Q~t~-~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 653 IQQTE-QLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred Hhccc-ccCchHHHHHHHHHHHhhhhhhHH
Confidence 76654 344556667777777778877664
No 86
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0044 Score=77.68 Aligned_cols=106 Identities=15% Similarity=0.009 Sum_probs=77.9
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-cH-------
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GT------- 1691 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~-g~------- 1691 (2256)
+..++.....|.++.||..|++++-++.+ |-+....+.....+.+.+ ....+|..|.+.+.-..+.+ ++
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD-~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSD-DYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 45567788889999999999999988887 444345566777777766 44558998888776665554 11
Q ss_pred -hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhC
Q 000098 1692 -VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2256)
Q Consensus 1692 -~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g 1728 (2256)
...+..+..+...++|-+..||..+..++|.+-.+-.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 1335677778888899999999999999987765543
No 87
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.94 E-value=0.00051 Score=83.09 Aligned_cols=195 Identities=19% Similarity=0.158 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000098 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~--~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
...++..++..+..++....|.+|.+-|-.+...-+...+.+ ..++..+.+.+.+.++...|+.|+..++.+++.-..
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 356777888888777677888988887777766443333331 268888888888867889999999999999998777
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAV-REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~V-R~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~ 1491 (2256)
.|..+....+-.++++-.|.++.| |.++.+|+..+..+.+-..+..+-|.++. .+...-.+++..+..+.+..+.
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 788888888888889888887755 66666777777777777677777666655 3333444566788888887754
Q ss_pred -hHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1492 -QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1492 -~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
.+...++.|.|.+++........||+.|..||-.+...++..
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 577888999999999999999999999999999999888743
No 88
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.0047 Score=74.36 Aligned_cols=515 Identities=18% Similarity=0.190 Sum_probs=254.1
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhH--------H-HHHhhcCCCHHHHHHHHHHHHHHHHh----------
Q 000098 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP--------E-VKKVLVDPIPEVRSVAARAIGSLIRG---------- 1649 (2256)
Q Consensus 1589 ~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~--------~-L~~~L~d~~~~VR~~a~~aL~~L~~~---------- 1649 (2256)
...+|..|...+..+.+.+ ..+.+..|...++| . +.-.++|++++.|..|...+..+.++
T Consensus 9 ~akvr~~al~~~~~~~~~~-~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSI-EKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHhhHHHHHHHHHhhh-hhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 3466666666665555432 12333334433333 1 22347899999999998888777653
Q ss_pred hCcCchHH-----------HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHH
Q 000098 1650 MGEENFPD-----------LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVR 1713 (2256)
Q Consensus 1650 ~g~~~~~~-----------lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR 1713 (2256)
.|+..|.. ....|+-.|..+..+.+-.....+++.++..-.-+ .+.++...+....++.++.||
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 34443322 22334444444555556666777788877665544 335667777778888999999
Q ss_pred HHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHHHHHHhhccchhchHHHHHh----h
Q 000098 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA------LGAGHVLVEHYATTSLPLLLPAVED----G 1783 (2256)
Q Consensus 1714 ~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~A------l~al~~iv~~~~~~~~~~llp~L~~----~ 1783 (2256)
..++..++.+..+-.. .|.+-..+..+- .-|..+ .+.++.+.. ..-+.++.. +
T Consensus 168 vs~l~~~~~~v~t~~~---------~pei~~~~~~~~-s~~n~~~~h~s~~~~~~~l~~-------~~~~~e~~~~~~~~ 230 (728)
T KOG4535|consen 168 VSSLTLLGAIVSTHAP---------LPEVQLLLQQPC-SSSNSATPHLSPPDWWKKLPA-------GPSLEETSVSSPKG 230 (728)
T ss_pred hHHHHHHHHHHhcCCC---------CHHHHHHhcCCC-ccccccCCCCCChHHHHhcCC-------CchhhhhccCCccC
Confidence 9888888877654332 122222222110 000000 000111000 000011110 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHH
Q 000098 1784 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1863 (2256)
Q Consensus 1784 l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~a 1863 (2256)
-.+.+|-+|.- .. ++. .-.++.- .+......+|. ...+ ..+|-.
T Consensus 231 ~~~~~~~i~~~-----~~----i~~---------~~~~~s~----~~~~~~~~~~~-------------~~~p-s~~rle 274 (728)
T KOG4535|consen 231 SSEPCWLIRLC-----IS----IVV---------LPKEDSC----SGSDAGSAAGS-------------TYEP-SPMRLE 274 (728)
T ss_pred CCCCcceeeee-----ee----eee---------cCCcccc----chhhHHhhhcC-------------ccCC-chhHHH
Confidence 11233333210 00 000 0000000 00111111111 1122 247888
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhc----------hHHHHh-h--
Q 000098 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS----------IIPILS-R-- 1930 (2256)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~----------llp~L~-~-- 1930 (2256)
+.+++..++.+.+ ..+-+.-.+...+..++.+..+.++..++.++..+...++.++.|+ +.-++. .
T Consensus 275 ~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~ 353 (728)
T KOG4535|consen 275 ALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL 353 (728)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC
Confidence 8888888776553 3456777777888888899999999999999999887776432211 111111 0
Q ss_pred ---hcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhchhhHHhHHH
Q 000098 1931 ---GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQAIDEIVP 2006 (2256)
Q Consensus 1931 ---~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~-~~VR~~A~~al~~l~~~~g~~~~~~ilp 2006 (2256)
......+...-..|.++..+..... ..+.+...+..+.+.....|.. .-||.+|..+.+.++-+-|....--++
T Consensus 354 ~~~~YDs~~~Tl~~s~Cdals~i~~~~f-~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv- 431 (728)
T KOG4535|consen 354 PRALYDSEHPTLQASACDALSSILPEAF-SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV- 431 (728)
T ss_pred hhhhhhhcCCCchhHHHHHHhhcCchhh-cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH-
Confidence 1111123445567777665532211 0111111233444433333333 336777777766655433321100000
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhC---CCcccc----HhhHHHHH
Q 000098 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---PGLNFH----LGTILPAL 2079 (2256)
Q Consensus 2007 ~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g---~~l~~~----l~~Ilp~L 2079 (2256)
.++..++..++..+ .+.- ..-.+-+++.+...+. +....+ ....+..+
T Consensus 432 ------------~~aa~~il~sl~d~--~ln~-----------r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 432 ------------ADAANAILMSLEDK--SLNV-----------RAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred ------------HHHHHHHHHHhhhH--hHhH-----------HHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 11111111111100 0000 0000111121111111 111111 11222222
Q ss_pred HHhh--C-CCCHHHHHHHHHHHHHHHhhcc---hhcHHHHHHHHHhhcC-----CCChhhHHHHHHHHHHHHHhchh--h
Q 000098 2080 LSAM--G-DDDMDVQSLAKEAAETVTLVID---EEGVESLVSELLKGVG-----DNQASIRRSSAYLIGYFYKNSKL--Y 2146 (2256)
Q Consensus 2080 l~~l--~-~~~~~vr~~a~~al~~l~~~~~---~~~~~~ll~~Ll~~l~-----~~~~~vR~~A~~~l~~l~~~~~~--~ 2146 (2256)
.+.- . -....++..+.++++.+.+.++ +.+...+++.=+..+. .....+|-++|+++|.++++-.. .
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 2211 1 1245688899999999888654 3455555554333332 33578999999999999987544 3
Q ss_pred hhhhHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhccCC
Q 000098 2147 LVDEAPNMISTLIVLLSD-SDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2147 ~~~y~~~il~~L~~~l~D-~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
-.++.+.+++.|..++.| .|-.||.+|..+|..-.++.+
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 456788889998887754 678999999999988766554
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.2 Score=63.83 Aligned_cols=349 Identities=15% Similarity=0.188 Sum_probs=194.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhccCc-hHhHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQML 1422 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l----~~~~~~~~Re~al~al~~L~~~l~~~~-~pyv~~ll 1422 (2256)
++..+.++.-.-..+.-++..- .+++..+.+.+ .+. |+...--|+. .++..-++.+ +.|-.++-
T Consensus 84 ss~kysEKqIGYl~is~L~n~n-------~dl~klvin~iknDL~sr-n~~fv~LAL~---~I~niG~re~~ea~~~DI~ 152 (938)
T KOG1077|consen 84 SSNKYSEKQIGYLFISLLLNEN-------SDLMKLVINSIKNDLSSR-NPTFVCLALH---CIANIGSREMAEAFADDIP 152 (938)
T ss_pred hcCCccHHHHhHHHHHHHHhcc-------hHHHHHHHHHHHhhhhcC-CcHHHHHHHH---HHHhhccHhHHHHhhhhhH
Confidence 4445555554444444444432 13444443333 222 4444434444 4444333333 33333333
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh-HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~-v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Iv 1501 (2256)
..+ .-++..+.||+.|+-|+-++.+..++-. .......++..|+|++.++-.++..++..++...|+....+++.-+
T Consensus 153 KlL--vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av 230 (938)
T KOG1077|consen 153 KLL--VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV 230 (938)
T ss_pred HHH--hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH
Confidence 222 2467789999999999999988755321 2467778888899999888888999999999998888777766655
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHH-hhcCchhHHhHHHHHHhhhCCCC-hhHHHHHHHHHhcccccCCChhhHhhHHH
Q 000098 1502 PKLTEVLTDTHPKVQSAGQTALQQVG-SVIKNPEIASLVPTLLMGLTDPN-DHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~-~~i~~~~i~~lv~~Ll~~l~d~~-~~vr~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
..+.......... +.... -.+++|++..=+-.++.....|. ..+| ..+..
T Consensus 231 s~L~riv~~~~t~--------~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r--------------------~~l~e 282 (938)
T KOG1077|consen 231 SRLSRIVVVVGTS--------LQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR--------------------ARLNE 282 (938)
T ss_pred HHHHHHHhhcccc--------hhhceeecCCChHHHHHHHHHHHhCCCCCCchHH--------------------HHHHH
Confidence 5544332211100 00000 11233444221112222222221 1222 11111
Q ss_pred HHHHhhcC-------CCH---HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1580 IVHRGLRE-------RSA---ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1580 ~L~~~L~d-------~~~---~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
++.+.|.. ++. ..+.....-.-+++..+ |++ ...+..-+..|-+++.+....+|.-+...+..++..
T Consensus 283 vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~-D~e--~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss 359 (938)
T KOG1077|consen 283 VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL-DSE--PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS 359 (938)
T ss_pred HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc-CCc--HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc
Confidence 22221110 011 11111111111222211 211 123444556677777788888898888887777754
Q ss_pred hC-cCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhC
Q 000098 1650 MG-EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2256)
Q Consensus 1650 ~g-~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g 1728 (2256)
-. -+....-...++..|+.+.+..+|..+..-|-.++. .+....++..+++.+.+.++.+|+....-..-++..+.
T Consensus 360 ~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 360 EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 11 011223355566778877888899998887766654 34556788888888888999999999888899999998
Q ss_pred hhHHHHHHHHHHHHH
Q 000098 1729 VQFQNYLQQVLPAIL 1743 (2256)
Q Consensus 1729 ~~f~~yl~~ilp~Ll 1743 (2256)
.++.-|++.++..+-
T Consensus 437 tDy~WyVdviLqLir 451 (938)
T KOG1077|consen 437 TDYSWYVDVILQLIR 451 (938)
T ss_pred CCcchhHHHHHHHHH
Confidence 888888877766553
No 90
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.079 Score=68.52 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=92.3
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~ 1654 (2256)
..+.|.+...++++...+-..++..+..+... ....+.| -+..+..++..+.+-+|.+|.+.|..++...+..
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~- 316 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA- 316 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc-
Confidence 34667788888888888888888888887763 2233333 5667778888999999999999999998765432
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~ 1729 (2256)
..-+=+-| +.|-++. .|.-+..++..+.+.......+.+|..+-..+.+-+..-+.....++..++..++.
T Consensus 317 v~~cN~el-E~lItd~---NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 317 VTVCNLDL-ESLITDS---NRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred ccccchhH-Hhhhccc---ccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 11111112 2222222 46667777777777666666666666665555554445455555555555555554
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.25 Score=63.99 Aligned_cols=194 Identities=19% Similarity=0.223 Sum_probs=121.1
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcc
Q 000098 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1334 ~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~-~~~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
...+.|+.|.+...++.-...||.|+.||..+.+.+...... .-|+.+.+.++ |-.|+..-..++..+..+...-.
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd- 95 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD- 95 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc-
Confidence 356788888888888877889999999999999865332221 12233333332 33344333322222211111100
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~ 1492 (2256)
.| ...|.+..+-+...+-...+... +..+..++..++..+.++|..+++++.++..+.|.+
T Consensus 96 --~~-----------~v~dds~qsdd~g~~iae~fik~------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e 156 (970)
T KOG0946|consen 96 --SP-----------EVMDDSTQSDDLGLWIAEQFIKN------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE 156 (970)
T ss_pred --ch-----------hhcccchhhhHHHHHHHHHHHcC------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH
Confidence 00 00111112222223333222211 456778888999999999999999999999999987
Q ss_pred Hhh---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhhhCCC
Q 000098 1493 LSQ---CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1493 l~~---~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~Ll~~l~d~ 1549 (2256)
+.. .+|.-+..++.+|.|.+.-+|..+.--|..+.+..++- .++.++..|+..+...
T Consensus 157 ~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 157 LQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 654 45777888999999999999999999998888764431 1255666777777543
No 92
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.84 E-value=0.0021 Score=81.19 Aligned_cols=239 Identities=18% Similarity=0.145 Sum_probs=147.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
.++.+...+....+..++..+..++... . .+ ..+..++..+.|.++.||..+..+++.+- -..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~----~---~~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------~~~ 117 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ----E---DA---LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------GRQ 117 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc----C---Ch---HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------chH
Confidence 4555666664444566665544433211 1 11 13667778888999999999988887552 234
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
..+.+...+.+.++.+|.+++.+++..- ..-.+.+...++|+++.||..|+.+|+.+... ..
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a 179 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-------LS 179 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cc
Confidence 5677778888999999998887777521 12245577778899999999999999987642 34
Q ss_pred HHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1539 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+|.|...+.|+++.+|. ++..+.... +. ...+.+.....+.++..+.....++... ++
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~lG-----~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~-------- 238 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLLAG-----SR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG-------- 238 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHcC-----CH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc--------
Confidence 45566778888888874 555554311 01 1223333333444444444333333222 11
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i 1685 (2256)
+..++.|..++.|+. +|..++.++|.+.. +..++.|++.+.++. .+..+..++..|
T Consensus 239 ~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 239 PDAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred hhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 145667777777754 88888888886653 457788877776532 556565555544
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.83 E-value=2.4e-05 Score=69.29 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1472 w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2256)
|++|.+|+.+||.++...++.+..+++.++|.|..+|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999865
No 94
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.82 E-value=0.0035 Score=79.11 Aligned_cols=247 Identities=23% Similarity=0.251 Sum_probs=156.0
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2256)
...+.+...+.|++..+|..+...++.+ +....+|.+...+.+.++.+|..++.+||.+-. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4566777788899999999988775443 346788999999999999999999998886432 45
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC------------hhHH-HHHHHHHhccc
Q 000098 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2256)
Q Consensus 1500 Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~------------~~vr-~al~~L~~~~~ 1565 (2256)
.+|.+++.+. |.+..||..|.++|+.+...- -+..++..+.++. ..+| .++..+...
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 6677777777 899999999999999886432 1334444555443 1233 233343321
Q ss_pred ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2256)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~ 1645 (2256)
......+.+.+++.+....+|..+...++.+.... ..+.+.+...+.|+++.+|..+..++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234566777777777788888777777665421 2355677777888888888888777765
Q ss_pred HHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhH
Q 000098 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2256)
Q Consensus 1646 L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La 1724 (2256)
+.. ....+.+...+.++ +...+.......+ ..........+...+.+....+|..+...++.+.
T Consensus 240 ~~~-------~~~~~~l~~~l~~~-~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 240 IGD-------EEAVDALAKALEDE-DVILALLAAAALG-------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred cCc-------chhHHHHHHHHhcc-chHHHHHHHHHhc-------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 442 34455555555553 3334433333332 1111222333444555666666666665555443
No 95
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.033 Score=67.38 Aligned_cols=498 Identities=17% Similarity=0.161 Sum_probs=256.6
Q ss_pred CHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHH--------HHH-HHcCCCcHHHHHHHHHHHHHHHhh----------h
Q 000098 1392 SAKRREGALLAFECLCEKLG-RLFEPYVIQMLP--------LLL-VAFSDQVVAVREAAECAARAMMSQ----------L 1451 (2256)
Q Consensus 1392 ~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp--------~ll-~~l~D~~~~VR~aa~~al~~l~~~----------l 1451 (2256)
..++|.+|+.+|..+...+. +.|-.|...++| .++ -.++|+++..|..|.+.+..+..- +
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 46889999999998888776 455666554443 333 357899999999888877765421 1
Q ss_pred hHhhH-----------HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhh-Hh-hhhhhHHHHHHHhhcCCCHHHHH
Q 000098 1452 SAQGV-----------KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ-LS-QCLPKIVPKLTEVLTDTHPKVQS 1517 (2256)
Q Consensus 1452 ~~~~v-----------~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~-l~-~~L~~Ivp~L~~~L~D~~~~VR~ 1517 (2256)
+++.+ ......++-.+. +....+-...+.+|..+....|-. +. ..+-+++..+.++++++++.||.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 11111 111111222222 333444445667777777766643 21 24457788888899999999999
Q ss_pred HHHHHHHHHHhhcC-chhHHhHHHHHHh--hhCCCChhHHHHHHHHH------hcccccCCChhhH--------------
Q 000098 1518 AGQTALQQVGSVIK-NPEIASLVPTLLM--GLTDPNDHTKYSLDILL------QTTFVNTVDAPSL-------------- 1574 (2256)
Q Consensus 1518 aA~~aL~~l~~~i~-~~~i~~lv~~Ll~--~l~d~~~~vr~al~~L~------~~~~~~~~~~~~l-------------- 1574 (2256)
.+...++.+...-. .|+++..+..-.. .+..|.....+-.+.|. ++........+.-
T Consensus 169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~ 248 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP 248 (728)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence 99988888775432 2344322211000 00001000001111110 0000000000000
Q ss_pred ---hhHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1575 ---ALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1575 ---~~i~p~L~~~L~d--~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
.-......+.+.. ....+|..+.+.+..|+..++ ....|+-++...+...+.++.+.++..+++++..+...
T Consensus 249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~---~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~ 325 (728)
T KOG4535|consen 249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS---MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTG 325 (728)
T ss_pred CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHH
Confidence 0011111222221 123689999999999887653 23456667777888888899999999999999999887
Q ss_pred hCcCchH------HHHHHHHHHhhc---------CCCHHHHHHHHHHHHHHHHHhcH---hHHHHHHHHHHHhccC-CCH
Q 000098 1650 MGEENFP------DLVSWLLDALKS---------DNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNCSH-QRA 1710 (2256)
Q Consensus 1650 ~g~~~~~------~lip~Ll~~L~~---------~~~~~~R~~aa~~L~~i~~~~g~---~~l~~ll~~ll~~l~~-~~~ 1710 (2256)
++.++.+ .....+...+.. ..........+.+++.+...--. +..+...+.+...+.| .+.
T Consensus 326 lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~ 405 (728)
T KOG4535|consen 326 LIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNR 405 (728)
T ss_pred HhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHH
Confidence 7633221 122212222221 11111234444555544322110 0112344555555554 355
Q ss_pred HHHHHHHHHHHHhHhhhChh-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCH
Q 000098 1711 SVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789 (2256)
Q Consensus 1711 ~vR~~al~~l~~La~~~g~~-f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~ 1789 (2256)
-+|..++...+.+...-|-. -..+.......++..+.|..-++|..+..+++.|...+ ..++-
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL------------~~~~P---- 469 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL------------IVNMP---- 469 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH------------HcCCC----
Confidence 67888887776544333321 12455666677777777777778887777766654332 22221
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000098 1790 RIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869 (2256)
Q Consensus 1790 ~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~ 1869 (2256)
.+|....+..|.++.. .+..-..+..| ...|+..+...++
T Consensus 470 s~~s~~eR~sg~ll~~---------------------------------------~~~~A~~~~Ad-~dkV~~navraLg 509 (728)
T KOG4535|consen 470 TPDSFQERFSGLLLLK---------------------------------------MLRSAIEASAD-KDKVKSNAVRALG 509 (728)
T ss_pred CchHHHHHHHHHHHHH---------------------------------------HHHHHHHhhhh-hhhhhhHHHHHHh
Confidence 1222222333333211 00000000001 1236666666666
Q ss_pred HHHhcC----hhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhC-----ccchhchHHHHhhhcCCC-Chh
Q 000098 1870 TIVANT----PKTLKEIMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLG-----ERVLPSIIPILSRGLKDP-SAS 1938 (2256)
Q Consensus 1870 ~l~~~~----~~~l~~~l~~Ll~~L~~~L-~~~~~~~R~~A~~aL~~lv~~~~-----~~~l~~llp~L~~~l~d~-~~~ 1938 (2256)
.+..-. +..+.+++..-+..+..+. ...+..+|..++.++|.+++.-. .+..+.+++.|...+.+. +-.
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFK 589 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFK 589 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccce
Confidence 543322 1223333333222222111 12355788888889998887421 234567777777766544 556
Q ss_pred hHHhHHHHHH
Q 000098 1939 RRQGVCIGLS 1948 (2256)
Q Consensus 1939 vR~~a~~aL~ 1948 (2256)
+|..++.+|.
T Consensus 590 VRi~AA~aL~ 599 (728)
T KOG4535|consen 590 VRIRAAAALS 599 (728)
T ss_pred Eeehhhhhhc
Confidence 7777766654
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.81 E-value=0.0028 Score=79.94 Aligned_cols=185 Identities=23% Similarity=0.288 Sum_probs=134.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchH
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~ 1656 (2256)
..+.+.+.+.++++.+|..+...++.+.. ...++.+...+.|.++.+|..+..++|.+. .+
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------~~ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDEDPRVRDAAADALGELG-------DP 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------Ch
Confidence 45667778888888999888877555542 236788999999999999999999777654 35
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCC------------HHHHHHHHHHHHHhH
Q 000098 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR------------ASVRDGYLTLFKYLP 1724 (2256)
Q Consensus 1657 ~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~------------~~vR~~al~~l~~La 1724 (2256)
..+|.+...+..+.+..+|..++.+++.+-... .+..++..+++.. ..+|..+...++.+.
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~ 177 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG 177 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC
Confidence 677888888886778889999999888764322 1334455555433 246666666555432
Q ss_pred hhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1725 ~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
. +...+.+...+.++...||..+..++..+.... ..+.+.+...+.+++|.+|..++..+|.+
T Consensus 178 ----~------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 178 ----D------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred ----C------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 1 234567788888988899999999888764432 23567778888999999999999888765
No 97
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.76 E-value=0.34 Score=63.61 Aligned_cols=122 Identities=12% Similarity=0.168 Sum_probs=91.8
Q ss_pred cHhhHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhh
Q 000098 2071 HLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD 2149 (2256)
Q Consensus 2071 ~l~~Ilp~Ll~~l~~-~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~ 2149 (2256)
.+...+|.+++.|+- ....+|....-+++++|.++. ...+..+|.+...++|+++-+|+.++..+..+.+.. +..
T Consensus 965 LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~---~vK 1040 (1529)
T KOG0413|consen 965 LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG---IVK 1040 (1529)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh---hhh
Confidence 345688999999864 457889999999999998652 235778999999999999999999999999998754 333
Q ss_pred hHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCc-hhchHHHH
Q 000098 2150 EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV-QPSYIKVI 2196 (2256)
Q Consensus 2150 y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~-l~~lv~~l 2196 (2256)
+-..++-.++..+-|.++++|+-|-.+++.+.+.-.+.. +..|+..+
T Consensus 1041 w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1041 WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 334445455566678999999999999999886544332 33455444
No 98
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.75 E-value=0.0034 Score=79.33 Aligned_cols=243 Identities=18% Similarity=0.075 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchH
Q 000098 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2256)
Q Consensus 1337 ~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~p 1416 (2256)
..++.++..|..+++..++..++.++...- ....+..+.+.+.+. +..+|.++..+++.+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~---------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~--------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE---------DALDLRSVLAVLQAG-PEGLCAGIQAALGWLG--------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC---------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCC---------
Confidence 345555666655555666665555543111 112356666677665 5667777776665431
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1417 yv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
-....+.+...+.+.++.||..+..+++..- ..-.+.+...+.|.+..+|..|+.++|.+-.
T Consensus 115 -~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------- 176 (410)
T TIGR02270 115 -GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDPGPALEAALTHEDALVRAAALRALGELPR--------- 176 (410)
T ss_pred -chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc---------
Confidence 1244556666778888889888776665421 1124566677778899999999999987653
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhh
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~ 1576 (2256)
...+|.|...+.|.++.||.+|..++..++. + .-++.+.....++....+..+....... . -..
T Consensus 177 -~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~~~l~~~~~~~g~~~~~~l~~~lal~-----~---~~~ 240 (410)
T TIGR02270 177 -RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAWGVCRRFQVLEGGPHRQRLLVLLAVA-----G---GPD 240 (410)
T ss_pred -ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHHHHHHHHHhccCccHHHHHHHHHHhC-----C---chh
Confidence 2445567778999999999999999988764 2 1122333333344333322211111100 0 114
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
.++.+...+++.. +|..++.+++.+.. + ..++.|...+.|+. ++..|..++..|..
T Consensus 241 a~~~L~~ll~d~~--vr~~a~~AlG~lg~----p--------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 241 AQAWLRELLQAAA--TRREALRAVGLVGD----V--------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHhcChh--hHHHHHHHHHHcCC----c--------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 6677777777754 88888888886643 2 25677777787754 88888888888764
No 99
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.22 Score=66.30 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=118.5
Q ss_pred ccCCChhHHHHHHH-HHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhh
Q 000098 1467 LEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2256)
Q Consensus 1467 L~~~~w~~R~~a~~-~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~ 1545 (2256)
+.+.+.+.|..|+. .+..|..+- . ++.++|.+++.....+.++++-.--=|..+++.-+ ...--.++.+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--d----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--D----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--C----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhh
Confidence 56666666766664 556665543 3 34555555555556678999888877777776532 2335567888999
Q ss_pred hCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhh-hhHH
Q 000098 1546 LTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL-LLPE 1623 (2256)
Q Consensus 1546 l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~-Ll~~ 1623 (2256)
++||++.+|. |+..+.... ...-+..+++.+.+.+.|+++.||+.|+.++.++.+. ++.. |.+. +...
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l---~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDL---YHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhh---hhcccHHHH
Confidence 9999999984 777766421 1234567888999999999999999999999999874 3211 2222 5566
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1624 VKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1624 L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
+..++.|.+|.|-..|..++..+...
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77778899999999998888877654
No 100
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.71 E-value=0.49 Score=63.76 Aligned_cols=354 Identities=16% Similarity=0.175 Sum_probs=167.0
Q ss_pred HHHHHHHHHHhhcCchh-H--HhHHHHHHhhhCCCChhHH-HHHHHHHhccc-ccCCChhhHhhHHHHHHHhhcCCCHHH
Q 000098 1518 AGQTALQQVGSVIKNPE-I--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTF-VNTVDAPSLALLVPIVHRGLRERSAET 1592 (2256)
Q Consensus 1518 aA~~aL~~l~~~i~~~~-i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~-~~~~~~~~l~~i~p~L~~~L~d~~~~v 1592 (2256)
.+...|.++++..+... + ..+++.|.+++...+.... .++..|.+.++ ....+.-.-..++|.+.+.+...+.+.
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 44555666665443221 1 4566666666665544332 12222222111 111111122346777788887777788
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhh--hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc-C--chHHHHHHHHHHhh
Q 000098 1593 KKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-E--NFPDLVSWLLDALK 1667 (2256)
Q Consensus 1593 R~~a~~~l~~L~~~l~~~~~l~~~--l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~-~--~~~~lip~Ll~~L~ 1667 (2256)
+..+..++.|++. ++ ++.+. -..++|.+..++.+++ .|..+...+..++..-.. . ...+++|.+++.+.
T Consensus 348 ~~~aLrlL~NLSf---d~-~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 348 VNVALRLLFNLSF---DP-ELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred HHHHHHHHHHhCc---CH-HHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 8888888888774 21 22222 2357888888888754 455666666666542110 1 13468898888877
Q ss_pred cCCCHHHHHHHHHHHHHHHHHh--cHhHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh---hHHHHHHHHHHH
Q 000098 1668 SDNSNVERSGAAQGLSEVLAAL--GTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV---QFQNYLQQVLPA 1741 (2256)
Q Consensus 1668 ~~~~~~~R~~aa~~L~~i~~~~--g~~~l-~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~---~f~~yl~~ilp~ 1741 (2256)
...+..+....+..+..++..- ..... .+.++.++........ ...+.++..++..-|+ .|.+|+..++
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~~~i~~L~-- 496 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFVDFIGDLA-- 496 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHHHHHHHHH--
Confidence 6444333222211111111000 00000 1122333333222111 2234456666665543 3444444433
Q ss_pred HHHhcCCC-CHHHHHHHHHHHHHHHHHh-hccch------hchHHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhcCCCc
Q 000098 1742 ILDGLADE-NESVRDAALGAGHVLVEHY-ATTSL------PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSG 1811 (2256)
Q Consensus 1742 Ll~~L~d~-~~~VR~~Al~al~~iv~~~-~~~~~------~~llp~L~~~l~d--~~~~iR~~sv~llg~ll~~~~g~~~ 1811 (2256)
..+... +++ ...++++.+.... .+..+ -.++|.+.+.+.. ....+..+++.++|.+..
T Consensus 497 --~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~------- 564 (708)
T PF05804_consen 497 --KIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS------- 564 (708)
T ss_pred --HHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-------
Confidence 333332 333 3344444332211 11111 1267777766643 233577788888887641
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHH--HHHHHH
Q 000098 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM--PVLMNT 1889 (2256)
Q Consensus 1812 ~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l--~~Ll~~ 1889 (2256)
++ ..+..+.....-..+-.++....+.+.-|-+. +-+|..+..+ +.+...++ ..+...
T Consensus 565 --------d~----------~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQi-l~~f~~ll~h-~~tr~~ll~~~~~~~y 624 (708)
T PF05804_consen 565 --------DP----------ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQI-LYVFYQLLFH-EETREVLLKETEIPAY 624 (708)
T ss_pred --------CH----------HHHHHHHhCChHHHHHHHHHhhCchHHHHHHH-HHHHHHHHcC-hHHHHHHHhccchHHH
Confidence 00 01111111112223333444444433334333 3344444444 22222222 234555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH
Q 000098 1890 LISSLASSSSERRQVAGRALGELVR 1914 (2256)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~aL~~lv~ 1914 (2256)
++..+.+.|..+|..+-.||.-+.+
T Consensus 625 lidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 625 LIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6677788888888888888877665
No 101
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.03 Score=68.85 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhCcc-ch
Q 000098 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGER-VL 1921 (2256)
Q Consensus 1844 ~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~-~~~~R~~A~~aL~~lv~~~~~~-~l 1921 (2256)
.++..+.....|++..+|..|+..++..+..+|...+.+.+.+++.++..|-|+ +.++.-.+..+|..+.+..... ..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 344455555789999999999999999999999999999999999999887654 5788889999999888876543 33
Q ss_pred hchHH---HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHH---HHHhcCCCHHHHHHHH
Q 000098 1922 PSIIP---ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI---RTALCDSILEVRESAG 1986 (2256)
Q Consensus 1922 ~~llp---~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l---~~~L~D~~~~VR~~A~ 1986 (2256)
+.+++ .+...+.+.++..|..+...++.+...+|+..-.-|.+++...+ .-.+.|+++.|-.+..
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence 44444 35567778889999999999998888887653333333333222 2356788887755433
No 102
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.7 Score=61.04 Aligned_cols=271 Identities=16% Similarity=0.229 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCC-----hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh-h
Q 000098 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-L 1508 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~-----w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~-L 1508 (2256)
.-|..-.+++-.....+++.-..-++..+-+.+.+.+ |..-.+.+..+..+++.........++.++...... +
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL 518 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence 3455555555555555553333555556666665544 887788888888888877665544444333322111 1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCch--hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhc
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2256)
+-.++..-..+...++.++..+++. ++...+|.|...+..+.
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk------------------------------------ 562 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK------------------------------------ 562 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch------------------------------------
Confidence 2336666677777788877776542 34445555555443322
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhCcC----chHHHHH
Q 000098 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVS 1660 (2256)
Q Consensus 1587 d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip 1660 (2256)
.-..+...+..+|+ ..+.++.||.+.++......++. -....|...++++|.+.....++ |...++.
T Consensus 563 -----~s~q~i~tl~tlC~--~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 563 -----ESEQAISTLKTLCE--TCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred -----HHHHHHHHHHHHHH--hhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 11223334667776 35578899999999888888764 34668889999999998877633 4444444
Q ss_pred HHHHHhhc----C-CCHHHHHHHHHH---HHHHHHHhcHh-----------------------HHHHHHHHHHHhcc--C
Q 000098 1661 WLLDALKS----D-NSNVERSGAAQG---LSEVLAALGTV-----------------------YFEHILPDIIRNCS--H 1707 (2256)
Q Consensus 1661 ~Ll~~L~~----~-~~~~~R~~aa~~---L~~i~~~~g~~-----------------------~l~~ll~~ll~~l~--~ 1707 (2256)
.++..+.. + +....+...+-. ++.+...+..+ .+..++|.+-+.+. -
T Consensus 636 ~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~ 715 (982)
T KOG2022|consen 636 PILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL 715 (982)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 44444432 1 222223333322 33333222100 11233333332222 1
Q ss_pred CCHHHHHHHHHHHHHhHhhhChhH-HHHHHHHHHHHHHhcCC
Q 000098 1708 QRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLAD 1748 (2256)
Q Consensus 1708 ~~~~vR~~al~~l~~La~~~g~~f-~~yl~~ilp~Ll~~L~d 1748 (2256)
....+-+++|..++.=-...++.| .|+++.+.+.+......
T Consensus 716 ~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~ 757 (982)
T KOG2022|consen 716 GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTS 757 (982)
T ss_pred cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccc
Confidence 355666776666665555666778 88999999988885443
No 103
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.50 E-value=1.9 Score=64.84 Aligned_cols=143 Identities=20% Similarity=0.284 Sum_probs=105.6
Q ss_pred HHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc--chhcHHHHHHHHHhhcCCC--ChhhHH
Q 000098 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI--DEEGVESLVSELLKGVGDN--QASIRR 2130 (2256)
Q Consensus 2055 ~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~--~~~~~~~ll~~Ll~~l~~~--~~~vR~ 2130 (2256)
..+..+...++..|..|++..++..+..+.......|.......+.+..-. .+.+.+...+.+++.+.+. ....|.
T Consensus 913 ~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~ 992 (2341)
T KOG0891|consen 913 SLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRK 992 (2341)
T ss_pred HHHHHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHh
Confidence 455666777788888899888888877774433444554444444444422 2356677788888888877 477899
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHh
Q 000098 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2131 ~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+...++.+.+ ..++..|...++..+++.+.-. .+++......++.+.+.+... +..++|.+...+.
T Consensus 993 ~~l~t~~~l~~--~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~-~~i~~p~~~~~~~ 1059 (2341)
T KOG0891|consen 993 SALITIGRLAQ--QVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKD-FAIFIPMVNKKLV 1059 (2341)
T ss_pred hHHHHHHHHHH--hhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCc-eeehHHHHHHHHh
Confidence 99999999887 5678889999999999988877 999999999999999988876 4455666554433
No 104
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.22 Score=64.17 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=92.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHH
Q 000098 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD 1700 (2256)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ 1700 (2256)
+..+..++...++.|+..|+.++-.+... +..+......+++.+..+.+..++.-...-+.++- ......++++.-.
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~~l~mD 321 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSND--PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQGLIMD 321 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCC--HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHHHHHHH
Confidence 34444555555555555544444333210 11111122223333333333334444444444443 3334467777778
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHhhccch
Q 000098 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-------ADENESVRDAALGAGHVLVEHYATTSL 1773 (2256)
Q Consensus 1701 ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L-------~d~~~~VR~~Al~al~~iv~~~~~~~~ 1773 (2256)
++..+..++-.||..++...-.+...- . +++++..+-.-+ .|++...|..-.+++....-+|.. ..
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvssr--N----vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-~a 394 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVSSR--N----VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-VA 394 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhhhc--c----HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH-HH
Confidence 888899999999998877665555432 1 223333332222 233445677777777766555543 23
Q ss_pred hchHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000098 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1774 ~~llp~L~~~l~d~~~~iR~~sv~llg~ll 1803 (2256)
..++|.+.+.+.|.|...-...+..+.+.+
T Consensus 395 atvV~~ll~fisD~N~~aas~vl~FvrE~i 424 (948)
T KOG1058|consen 395 ATVVSLLLDFISDSNEAAASDVLMFVREAI 424 (948)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 447888888888888766655555555544
No 105
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.037 Score=68.15 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=105.0
Q ss_pred hhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
+.+..++..+.+-..||+..+|..|+++|+..+...+.+ +.+.++..++..|.++.+..+...+..+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 445566666667778999999999999999999875543 45667777777787776677888888887776654432
Q ss_pred h----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHH-HHHHHH---HHHHHhcCCCCHHHHHHHHHHH
Q 000098 1692 V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN-YLQQVL---PAILDGLADENESVRDAALGAG 1761 (2256)
Q Consensus 1692 ~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~-yl~~il---p~Ll~~L~d~~~~VR~~Al~al 1761 (2256)
. ++-++.-.+.+...+.++.+|-+++.+||.++...|..-+. |.+++. .+++-.+.|+++.|-.+.-..+
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHH
Confidence 2 44555556677778889999999999999999988865433 333333 3455567888887755443333
No 106
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.43 E-value=0.00017 Score=63.94 Aligned_cols=55 Identities=31% Similarity=0.433 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Q 000098 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 2180 (2256)
Q Consensus 2126 ~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l 2180 (2256)
|.+|.+|+.+||.+++..+....+|.+.+++.|..++.|+++.||.+|++||+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999998888899999999999999999999999999999999864
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.38 E-value=1.2 Score=59.73 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=103.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~ 1457 (2256)
.+.+.+.+++. .+|.+.+.-.-.=+...++.-+ .-..-.++.+.+-++|+++.+|-.|..++..+- .+.-+.
T Consensus 55 sLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~---~~el~~ 126 (757)
T COG5096 55 SLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR---VKELLG 126 (757)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC---hHHHHH
Confidence 45566666666 4477777655443433333322 223446788899999999999999887776552 123347
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.+++++.+.+.|++..+|+.|+.+++.+....++..... +.+..+..++.|++|.|-.+|..+|..+...
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--GLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 889999999999999999999999999987766654332 2455567788999999999999999888765
No 108
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.2 Score=64.51 Aligned_cols=429 Identities=17% Similarity=0.210 Sum_probs=203.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchH--
Q 000098 1222 SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-- 1299 (2256)
Q Consensus 1222 ~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~-- 1299 (2256)
.+.+..++++++-.++.-....+-++ .+.-.-++.++--.|.. . +..++.--. .+-+++.....+-.-++
T Consensus 26 k~~Lek~~~~~KIeamK~ii~~mlnG-e~~p~Llm~IiRfvlps--~----~~elKKLly-~ywE~vPKt~~dgkl~~EM 97 (948)
T KOG1058|consen 26 KEKLEKGDDEVKIEAMKKIIALMLNG-EDLPSLLMTIIRFVLPS--R----NHELKKLLY-YYWELVPKTDSDGKLLHEM 97 (948)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHcC-CCchHHHHHHhheeecc--C----chHHHHHHH-HHHHHccccCCCcccHHHH
Confidence 45677788888877776655554433 22222223333323322 1 112333222 22233322222111111
Q ss_pred -HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-c-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchh
Q 000098 1300 -AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-E-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK 1376 (2256)
Q Consensus 1300 -~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~-~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~ 1376 (2256)
-+-...-..|++|++.+|-...+-|. .+++ . +..++|.....| ++...-||+.|..++..+.+... ..+
T Consensus 98 ILvcna~RkDLQHPNEyiRG~TLRFLc----kLkE~ELlepl~p~Iracl-eHrhsYVRrNAilaifsIyk~~~-~L~-- 169 (948)
T KOG1058|consen 98 ILVCNAYRKDLQHPNEYIRGSTLRFLC----KLKEPELLEPLMPSIRACL-EHRHSYVRRNAILAIFSIYKNFE-HLI-- 169 (948)
T ss_pred HHHHHHHhhhccCchHhhcchhhhhhh----hcCcHHHhhhhHHHHHHHH-hCcchhhhhhhheeehhHHhhhh-hhc--
Confidence 12233445788999999865443222 2221 1 223333333333 45567899999999999988631 122
Q ss_pred hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH
Q 000098 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 1456 (2256)
Q Consensus 1377 ~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v 1456 (2256)
++..+.+...+..+.|+.....|+..+-.. |+ +.|..-+.......+. +
T Consensus 170 pDapeLi~~fL~~e~DpsCkRNAFi~L~~~------------------------D~-----ErAl~Yl~~~idqi~~--~ 218 (948)
T KOG1058|consen 170 PDAPELIESFLLTEQDPSCKRNAFLMLFTT------------------------DP-----ERALNYLLSNIDQIPS--F 218 (948)
T ss_pred CChHHHHHHHHHhccCchhHHHHHHHHHhc------------------------CH-----HHHHHHHHhhHhhccC--c
Confidence 245556666666666766655554432211 11 1111111111111110 0
Q ss_pred HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hH
Q 000098 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI 1535 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i 1535 (2256)
...+ ...-++.+...+...|..-. ..+..++.+|..+++.|+-.|+.+|..+.. +| .+
T Consensus 219 ~~~L--------------qlViVE~Irkv~~~~p~~~~----~~i~~i~~lL~stssaV~fEaa~tlv~lS~---~p~al 277 (948)
T KOG1058|consen 219 NDSL--------------QLVIVELIRKVCLANPAEKA----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSN---DPTAL 277 (948)
T ss_pred cHHH--------------HHHHHHHHHHHHhcCHHHhh----HHHHHHHHHHhcCCchhhhhhcceEEEccC---CHHHH
Confidence 0000 01123334444433333322 234455666776677777777666655542 23 23
Q ss_pred HhHHHHHHhhhCCCC-hhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000098 1536 ASLVPTLLMGLTDPN-DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~-~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l 1613 (2256)
+.-...++.++.+.+ ..+.- .++.|.... ......+..++-.+.+.+...+-++|+++..+.-.+... .+..++
T Consensus 278 k~Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss-rNvedi 353 (948)
T KOG1058|consen 278 KAAASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS-RNVEDI 353 (948)
T ss_pred HHHHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh-ccHHHH
Confidence 333334444333221 11110 122222111 112334555666677888888899999998888777652 221222
Q ss_pred hhhhhhhhHHHHHh---hcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1614 IPYIGLLLPEVKKV---LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2256)
Q Consensus 1614 ~~~l~~Ll~~L~~~---L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g 1690 (2256)
..++. ..+... -.|.+..-|..-.+++...+..++ ++-..++|.+++.+.+.++. --.....-+.++++.+.
T Consensus 354 v~~Lk---ke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-~~aatvV~~ll~fisD~N~~-aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 354 VQFLK---KEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-EVAATVVSLLLDFISDSNEA-AASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHH---HHHHhccccccccchHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHhCc
Confidence 22221 111111 124556678888888888887654 34567999999999874322 22222222334443332
Q ss_pred HhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhHhhhC
Q 000098 1691 TVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLG 1728 (2256)
Q Consensus 1691 ~~~l~~ll~~ll~~l~~-~~~~vR~~al~~l~~La~~~g 1728 (2256)
. ....++..++..+.. ....+-+++++.+|..+...+
T Consensus 429 ~-Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 429 N-LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred h-HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 1 112233333333221 234455677777777665543
No 109
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.015 Score=75.40 Aligned_cols=223 Identities=14% Similarity=0.104 Sum_probs=161.1
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHH
Q 000098 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2256)
Q Consensus 1928 L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2256)
....+.|+.+.+|.+....+..+++.-.+..+ -....++......+.|.++=|--.|..++..+++. +-++++|.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev----y~e~il~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV----YPEDILPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh----cchhhHHH
Confidence 33456677778888888888888874332222 23356888888899999988888888888888874 34557777
Q ss_pred HHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCC
Q 000098 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087 (2256)
Q Consensus 2008 Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~ 2087 (2256)
+.+...+....-+ .+..+ ..-+|+..++...|+-+..|...++..++...++++
T Consensus 807 L~e~Y~s~k~k~~------------~d~~l--------------kVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQ------------TDYRL--------------KVGEAILKVAQALGELVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccCCC------------cccee--------------hHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCch
Confidence 6664443221100 00000 123567777777899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcc---hhcHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHhchhhhhh----hHHHHHHHHH
Q 000098 2088 MDVQSLAKEAAETVTLVID---EEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVD----EAPNMISTLI 2159 (2256)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~---~~~~~~ll~~Ll~~l~-~~~~~vR~~A~~~l~~l~~~~~~~~~~----y~~~il~~L~ 2159 (2256)
...|......++.++.... .+.+..+...++...+ |..+-+|++|+..+..+...++.+..| |..+....+.
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 8899999999999998653 3566666666666654 667999999999999999999888777 4455555565
Q ss_pred HHc-CCCChHHHHHHHHHHHHhh
Q 000098 2160 VLL-SDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2160 ~~l-~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
... .++++.++-.|..|+-.+-
T Consensus 941 ~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHhcCchhHHHHHHHHHHHHHH
Confidence 544 4566778889998887764
No 110
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.29 E-value=0.052 Score=72.74 Aligned_cols=355 Identities=14% Similarity=0.163 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-hhH--HhHHHHHHHhccCCChhH
Q 000098 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGV--KLVLPSLLKGLEDKAWRT 1474 (2256)
Q Consensus 1398 ~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-~~v--~~ilp~Ll~~L~~~~w~~ 1474 (2256)
.++..+..+++...-...-.-..+++.+..++..++..+.-.+...+..+.-.-.. ..+ ..++|.+.+.+.+++-..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 34445555555443211222345778888888877888887777777776532211 122 468999999999888888
Q ss_pred HHHHHHHHHHHHhhCh--hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhhhC-C
Q 000098 1475 KQSSVQLLGAMAYCAP--QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLT-D 1548 (2256)
Q Consensus 1475 R~~a~~~Lg~la~~~p--~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~-d 1548 (2256)
+..++.+|..++.... .++.. .+++|.+..+|.|+ ..|..+...|.+++..=... .+ ...+|.+.+.+. .
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 9999999999887532 22222 26889999999875 45666777888877532111 11 345677666543 3
Q ss_pred CChhHH-HHHHHHHhcccccCCChh--hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHH
Q 000098 1549 PNDHTK-YSLDILLQTTFVNTVDAP--SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625 (2256)
Q Consensus 1549 ~~~~vr-~al~~L~~~~~~~~~~~~--~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~ 1625 (2256)
+++.+. +.+..+.+.........- .-..+-..+.+.++.+++- ....+.|++.. ++. ....+...+..+.
T Consensus 424 ~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h--~~~-~k~~f~~~i~~L~ 496 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQH--DGP-LKELFVDFIGDLA 496 (708)
T ss_pred CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhc--Cch-HHHHHHHHHHHHH
Confidence 444433 233333221110000000 0011222333444444432 23467777763 211 1222222333333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhhCc--C---ch--HHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhcHh-HH--
Q 000098 1626 KVLVDPIPEVRSVAARAIGSLIRGMGE--E---NF--PDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-YF-- 1694 (2256)
Q Consensus 1626 ~~L~d~~~~VR~~a~~aL~~L~~~~g~--~---~~--~~lip~Ll~~L~~~~-~~~~R~~aa~~L~~i~~~~g~~-~l-- 1694 (2256)
..+..++. .+....|+|.++.-.-+ + .+ ..++|++.+.|.... .......+...+|.++..-... .+
T Consensus 497 ~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~ 574 (708)
T PF05804_consen 497 KIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK 574 (708)
T ss_pred HHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 44443322 24667777777753212 2 12 258999999997642 2335555666666655321111 11
Q ss_pred HHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1695 EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
.++++.++..++.. +.+.--..+.+|..+... ++.....+ .++...++..+.|.++.||..+-.++..+..
T Consensus 575 sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 575 SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35677777776543 555555666667666544 22111111 3577889999999999999988888776654
No 111
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.19 Score=65.49 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=107.7
Q ss_pred hhhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcC--c--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1617 IGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE--N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~--~--~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
.+.++|.|..++++ .++++...|++|+..+++.+++. . -...+|.|.+.|..-+-..+-..+.+++..+.+..++
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 56789999999986 47899999999999999998754 1 2348888888887644444666777788777777766
Q ss_pred hHHH-HHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1692 VYFE-HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1692 ~~l~-~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
..++ .-+..++..+.=-.-.+...|+.....+|+.+..+--.|+-+.+|.|-..|+..+...-+.++-++..++..+..
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 6432 111111111111123455667777778888776543367778899999999888777777888888888877654
No 112
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.20 E-value=0.011 Score=71.98 Aligned_cols=160 Identities=19% Similarity=0.310 Sum_probs=122.5
Q ss_pred chhhHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhh
Q 000098 1839 RDKRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS-ERRQVAGRALGELVRKL 1916 (2256)
Q Consensus 1839 ~e~~~~vl~~L~~~~~D-~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~-~~R~~A~~aL~~lv~~~ 1916 (2256)
+++|.+++..++.+++| .+...|..|+.++..+..+-|..+.......+..+++.-.++.. .+|.++-.|+..+....
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 34677888889999988 67889999999999999999888877777766666666666655 45555555666666666
Q ss_pred CccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000098 1917 GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2256)
Q Consensus 1917 ~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~ 1996 (2256)
+..-..-+.|.+.. .+...-..++..+.++++....+.+.+.++++.|.+.++.......||..|.+|+-.++..+
T Consensus 404 P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 404 PLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred chhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 65555555565554 22222234455888999999988898999999999999999999999999999999999999
Q ss_pred chhhHH
Q 000098 1997 GMQAID 2002 (2256)
Q Consensus 1997 g~~~~~ 2002 (2256)
|.+.+.
T Consensus 480 G~~~me 485 (516)
T KOG2956|consen 480 GMEEME 485 (516)
T ss_pred hHHhhh
Confidence 965544
No 113
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.39 Score=62.82 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc---cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~---~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
..-+.+|++.|..+.+......|..-|..++.-...+ .+.-..++|.|...+.++.+...--.|+.|+.++++.+++
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 3456678888877766677777776666655432222 2223368899999999998999999999999999999986
Q ss_pred CchHhHH-HHHHHHHHHc-CCCcHHHHHHHHHHHHHHHhhhhHhhHH-hHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1413 LFEPYVI-QMLPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1413 ~~~pyv~-~llp~ll~~l-~D~~~~VR~aa~~al~~l~~~l~~~~v~-~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
...-.+. ..+|.++..+ .-+--+|.+.+.+|+..|.+.-+...++ .-+-..+.+++==+-...+.|+-....++...
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5444333 3677777654 3456688899999999887765543321 12223333332112234455666666666665
Q ss_pred hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000098 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1490 p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~ 1531 (2256)
+.+-..++-+.+|.|.++|...+..+-..++-++..+++.+.
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 544445566889999999999999999999999999988765
No 114
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.17 E-value=0.022 Score=69.91 Aligned_cols=185 Identities=25% Similarity=0.207 Sum_probs=130.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC--c---CchHH
Q 000098 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--E---ENFPD 1657 (2256)
Q Consensus 1583 ~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g--~---~~~~~ 1657 (2256)
..+.+++...|..+...+..+...---+..+..+...++..+...++.+..+-+..|+++++.++-.+| . +.+..
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~ 129 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE 129 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence 344667788888887777666542112233445566788888888887777777788999999998877 3 26788
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHh--cHhHHH---HHHHHHHHh--cc----------CCCHHHHHHHHHH
Q 000098 1658 LVSWLLDALKSDN-SNVERSGAAQGLSEVLAAL--GTVYFE---HILPDIIRN--CS----------HQRASVRDGYLTL 1719 (2256)
Q Consensus 1658 lip~Ll~~L~~~~-~~~~R~~aa~~L~~i~~~~--g~~~l~---~ll~~ll~~--l~----------~~~~~vR~~al~~ 1719 (2256)
+.|.|...+.+.. ....|..++.+|+-+.-.. +.+... ..|..+... .+ .+++.+..+++.+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 9999988888754 3456777777776654433 333333 344422221 11 1246799999999
Q ss_pred HHHhHhhhCh-hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000098 1720 FKYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2256)
Q Consensus 1720 l~~La~~~g~-~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~ 1767 (2256)
|+.+....+. .+..++...+|.+...|..++.+||.+|-+++..+.+.
T Consensus 210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999988876 46677888999999999999999999999998877654
No 115
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.15 E-value=0.0029 Score=66.30 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=87.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhHH-hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v~-~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
++|.++..+.+.+..+|..+..++..++...+. ..++ .++|.+.+.+.+++.+++..++.+|+.++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 567777888888999999999999999865332 2233 789999999999999999999999999998765443332
Q ss_pred h-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1497 L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
. .++++.+.+.+.+.+.++|..++++|.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 358999999999999999999999999886
No 116
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.069 Score=69.63 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=102.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHH
Q 000098 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2256)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2256)
.......+.|+.+.+|..+...+..+.+.-... .-..++...++.+++++++ +-..+..++..++....++.++.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsy-vyLnaI~gv~~Lcevy~e~il~dL 807 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSY-VYLNAIRGVVSLCEVYPEDILPDL 807 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCce-eeHHHHHHHHHHHHhcchhhHHHH
Confidence 344455667889999999999999988843221 3356888888999987666 677788888888877655544433
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1698 l~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
.......-.......|.-+-.++..+....|+-+..|.+.++..++.+..|++...|..++..++.+++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 332222222222233333448999999999999999999999999999998877777777777666554
No 117
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.017 Score=70.97 Aligned_cols=245 Identities=16% Similarity=0.172 Sum_probs=148.0
Q ss_pred hhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHH
Q 000098 1275 LVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~v 1354 (2256)
.+.-+++.-+|-++ +...+ .++.+.+-+.+.+.+...-+++.-..+-+ .++....+.+..+++--.+.+...+
T Consensus 426 ~l~yG~~LGiGL~~--MgSan---~eiye~lKe~l~nD~a~~geAa~~gMGl~--mLgt~s~eai~dm~tya~ETqhe~i 498 (926)
T COG5116 426 ELAYGVCLGIGLIN--MGSAN---REIYEKLKELLKNDRALLGEAAVYGMGLL--MLGTWSVEAIEDMRTYAGETQHERI 498 (926)
T ss_pred HHHHHHHhhhcchh--ccccc---HHHHHHHHHHHhcchhhhhhhhhhcccee--eecCCCHHHHHHHHHHhcchhhhhH
Confidence 44455554444332 22223 55667776666554433222222111111 1233446677777766554445566
Q ss_pred HHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHH-HcCCCc
Q 000098 1355 RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV-AFSDQV 1433 (2256)
Q Consensus 1355 R~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~-~l~D~~ 1433 (2256)
.|+-+.+++.++-+.. ...-..+.+.+.++ ++..|-+++++++.---+.|. . .++..++. ..+|.+
T Consensus 499 ~Rglgig~aLi~ygrq------e~add~I~ell~d~-ds~lRy~G~fs~alAy~GTgn--~----~vv~~lLh~avsD~n 565 (926)
T COG5116 499 KRGLGIGFALILYGRQ------EMADDYINELLYDK-DSILRYNGVFSLALAYVGTGN--L----GVVSTLLHYAVSDGN 565 (926)
T ss_pred HhhhhhhhhHhhhhhH------HHHHHHHHHHhcCc-hHHhhhccHHHHHHHHhcCCc--c----hhHhhhheeecccCc
Confidence 7777777776664431 11222444444444 788888887766544333332 2 23333444 378999
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCC
Q 000098 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH 1512 (2256)
Q Consensus 1434 ~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~ 1512 (2256)
++||.+|..|++-++-.- ...++..++.|. +.+..+|.+...+||-.+.+.+.+. .+..|-.+..|+.
T Consensus 566 DDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~ 634 (926)
T COG5116 566 DDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTN 634 (926)
T ss_pred hHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcH
Confidence 999999999988765221 345666677766 5789999999999998776655442 2334555788999
Q ss_pred HHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhhhCCCC
Q 000098 1513 PKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1513 ~~VR~aA~~aL~~l~~~i~---~~~i~~lv~~Ll~~l~d~~ 1550 (2256)
.-||+.|+-+++-+..... +|.+..+...+.+.+.|..
T Consensus 635 dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 635 DFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 9999999999998876654 2455666666766666554
No 118
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=2.1 Score=55.16 Aligned_cols=283 Identities=14% Similarity=0.121 Sum_probs=166.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHH
Q 000098 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1302 (2256)
Q Consensus 1223 ~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il 1302 (2256)
.-+..+|+....-|+.|.. ..+|.+..+.+-+-+.++|-. ++ ..+.||+.+..++-.|-+..+.- -......
T Consensus 118 nDL~srn~~fv~LAL~~I~---niG~re~~ea~~~DI~KlLvS--~~--~~~~vkqkaALclL~L~r~spDl-~~~~~W~ 189 (938)
T KOG1077|consen 118 NDLSSRNPTFVCLALHCIA---NIGSREMAEAFADDIPKLLVS--GS--SMDYVKQKAALCLLRLFRKSPDL-VNPGEWA 189 (938)
T ss_pred hhhhcCCcHHHHHHHHHHH---hhccHhHHHHhhhhhHHHHhC--Cc--chHHHHHHHHHHHHHHHhcCccc-cChhhHH
Confidence 4555677776666666543 234445555555556666654 22 23478988877777776653221 1123456
Q ss_pred HHHHHHcCCCCHHHHHHHH---------------HhhHHhHH-------hhcCch----------H---HHHHHHHHHHh
Q 000098 1303 DKLLDVLNTPSEAVQRAVS---------------SCLSPLMQ-------SMQDEA----------P---TLVSRLLDQLM 1347 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~---------------~~L~~lv~-------~~~~~~----------~---~~l~~Ll~~L~ 1347 (2256)
.+++..|.|.+-.|--++. .|++..+. ..+.+. + --+-++++...
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 6777667665422211111 12222221 111111 1 11223444444
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~ 1427 (2256)
..+|..+|..-..++.+++.......-. ..+. ......+.++-.-.++-.++. -...+.+.+..+-+
T Consensus 270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~-k~vq-----------~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 270 TPEDPSTRARLNEVLERILNKAQEPPKS-KKVQ-----------HSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQ 336 (938)
T ss_pred CCCCchHHHHHHHHHHHHHhccccCccc-cchH-----------hhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHH
Confidence 4456777777777777777654311100 0010 111222333332333333332 12345667778888
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhH-hhHHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~-~~v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~ 1505 (2256)
.+.+.+.++|.-|.+.+..++..-.. +.+++....++..+. +.+-.+|+-|+++|-.|+... .-..|+..++
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~------Nak~IV~elL 410 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS------NAKQIVAELL 410 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh------hHHHHHHHHH
Confidence 88999999999999988887665333 456777888888998 889999999999999988643 3357888889
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
+++...++.+|+...--..-+++.+..
T Consensus 411 qYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 411 QYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 999888899998877777777776654
No 119
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.97 E-value=0.003 Score=66.18 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=85.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch---hcHH-HHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhh
Q 000098 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVE-SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE 2150 (2256)
Q Consensus 2075 Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~---~~~~-~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y 2150 (2256)
++|.+++.+.+.+..+|..+..++..++...++ ...+ .+++.+.+.+.++++.+|..++.+++.++...+.....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 677888888888899999999999999875322 2222 567888888889999999999999999988654332222
Q ss_pred H-HHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q 000098 2151 A-PNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2151 ~-~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
. ..+++.+...+++.+..+++.|.++|+.++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 347899999999999999999999999875
No 120
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.97 E-value=0.046 Score=67.07 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=134.5
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhh--ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC--c---
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N--- 1532 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~--~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~--~--- 1532 (2256)
|...++.+.++.-.+|..++..+..+... .++.+......+++.+...++-...+-+..|+++++-++-.++ .
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 34445556667777888888777766643 4566777778899999999987666677788888888877655 2
Q ss_pred hhHHhHHHHHHhhhCCCChh--HH-HHHHHHHhcccccCCChhhHhhHHHHHH---Hh--hc----------CCCHHHHH
Q 000098 1533 PEIASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVH---RG--LR----------ERSAETKK 1594 (2256)
Q Consensus 1533 ~~i~~lv~~Ll~~l~d~~~~--vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~---~~--L~----------d~~~~vR~ 1594 (2256)
..+..+.|.|.+.+.|.... +| .|+.+|+-..|+...+......++..+. .. .+ ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 24588999999999988653 44 4666776666765544444432223322 11 11 12356888
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2256)
Q Consensus 1595 ~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g 1651 (2256)
.|...++-+...+ +...+..++...+|.|..+|..++..||.+|..+|+.+.+...
T Consensus 205 aAL~aW~lLlt~~-~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTL-PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 8888888888754 3234566778889999999999999999999999999988654
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.97 E-value=0.0024 Score=62.83 Aligned_cols=86 Identities=33% Similarity=0.434 Sum_probs=69.6
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHH
Q 000098 2076 LPALLSAM-GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2256)
Q Consensus 2076 lp~Ll~~l-~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~i 2154 (2256)
+|.|++.+ +++++.+|..+..+++.+- -...++.|...++|+++.+|..|+.++|.+-. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 57788888 8889999999988888442 34778888888899999999999999998742 445
Q ss_pred HHHHHHHcCC-CChHHHHHHHHHHH
Q 000098 2155 ISTLIVLLSD-SDSTTVAAAWEALS 2178 (2256)
Q Consensus 2155 l~~L~~~l~D-~d~~Vr~~A~~aL~ 2178 (2256)
++.|...+.| ++..||..|..+||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7777887765 56678999999986
No 122
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=1.5 Score=57.36 Aligned_cols=409 Identities=15% Similarity=0.175 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHhccCchHhHHHHHHHHHHHcC
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALL-AFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~-al~~L~~~l~~~~~pyv~~llp~ll~~l~ 1430 (2256)
...|-.|..+|..+..+- . -+.+-.++.+++-+. ++.++..|+. ++..+... ..-+......+.....
T Consensus 114 d~yr~~AiR~L~~I~d~~---m--~~~iery~kqaivd~-~~avSsaalvss~hll~~~-----~~~vkrw~neiqea~~ 182 (865)
T KOG1078|consen 114 DLYRAAAIRALCSIIDGT---M--LQAIERYMKQAIVDK-NPAVSSAALVSSYHLLPIS-----FDVVKRWANEVQEAVN 182 (865)
T ss_pred cchhHHHHHHHHhhcCcc---h--hHHHHHHHHhHeecc-ccccchHHHHHHhhhhccc-----HHHHHHHHHhhhhccC
Confidence 445555555555554432 1 235566677777665 4444444322 11111110 1111112222222333
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC
Q 000098 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510 (2256)
Q Consensus 1431 D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D 1510 (2256)
+.+.-++..+..-+..+-++ ....+..++..+..+..+.-.+-+..+...+....+. ......+.+.+-.++.+
T Consensus 183 s~~~m~QyHalglLyqirk~-----drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~-~~~~s~~~~fl~s~l~~ 256 (865)
T KOG1078|consen 183 SDNIMVQYHALGLLYQIRKN-----DRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN-QQADSPLFPFLESCLRH 256 (865)
T ss_pred cHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc-ccchhhHHHHHHHHHhc
Confidence 33344444444333333221 1122333334343344444444455554444433222 33345677778888999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCC
Q 000098 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589 (2256)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~ 1589 (2256)
.+..|-..|+.++..+..... ..+..-+..|...++.|....| .|+..|.+....+... ....-+.+..+..|.+
T Consensus 257 K~emV~~EaArai~~l~~~~~-r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---v~~cN~elE~lItd~N 332 (865)
T KOG1078|consen 257 KSEMVIYEAARAIVSLPNTNS-RELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---VTVCNLDLESLITDSN 332 (865)
T ss_pred hhHHHHHHHHHHHhhccccCH-hhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---ccccchhHHhhhcccc
Confidence 999999999999887764332 2344456667777777776667 3555555422221100 0001122334444432
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcC
Q 000098 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2256)
Q Consensus 1590 ~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~ 1669 (2256)
|--+.-++..+.+. +... -.+.+|..+-..+.|-+-+-+-.+..++.+++..++.. ...+++.|.+.|.++
T Consensus 333 ---rsIat~AITtLLKT-G~e~----sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k-~~~~m~FL~~~Lr~e 403 (865)
T KOG1078|consen 333 ---RSIATLAITTLLKT-GTES----SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK-HTVMMNFLSNMLREE 403 (865)
T ss_pred ---cchhHHHHHHHHHh-cchh----HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH-HHHHHHHHHHHHHhc
Confidence 33344556666653 2212 23344444444444333333334455555565544322 345677777777776
Q ss_pred CCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh--hHHHHHHHHHHHHHH
Q 000098 1670 NSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILD 1744 (2256)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~--~f~~yl~~ilp~Ll~ 1744 (2256)
....-+.....++..++...... .+..+...+ ..+....-.+| .+..+..-.+. .-..|+.. +.+
T Consensus 404 Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI-EDce~~~i~~r-----ILhlLG~EgP~a~~Pskyir~----iyN 473 (865)
T KOG1078|consen 404 GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI-EDCEFTQIAVR-----ILHLLGKEGPKAPNPSKYIRF----IYN 473 (865)
T ss_pred cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH-HhccchHHHHH-----HHHHHhccCCCCCCcchhhHH----Hhh
Confidence 66666666777777776644322 122222222 11111122222 22222221111 11124333 233
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhcc-chhchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1745 GLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1745 ~L~d~~~~VR~~Al~al~~iv~~~~~~-~~~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
..-=++..||.+|..++..+. .+.. ..+.+.-.+.+++.|.+..+|..+--++..+
T Consensus 474 RviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l 530 (865)
T KOG1078|consen 474 RVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNL 530 (865)
T ss_pred hhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 333345678888887777664 2222 2344556667777777777776655444443
No 123
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.95 E-value=0.052 Score=69.87 Aligned_cols=143 Identities=21% Similarity=0.207 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCC
Q 000098 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP 1935 (2256)
Q Consensus 1859 ~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~ 1935 (2256)
.|..++..++..+ ...|+.+.|++..||+.+. .+.+...+..++.+++.++..+..+ ..++|+..|..++..+
T Consensus 291 ~V~Aa~A~A~v~l-~~lP~KLnPiIrpLMdSIK---~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D 366 (441)
T PF12054_consen 291 RVLAAAASALVAL-GGLPKKLNPIIRPLMDSIK---REENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVD 366 (441)
T ss_pred HHHHHHHHHHHHh-ccCCCCccHHHHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccC
Confidence 4555555555443 4578899999999999997 6788999999999999999987643 5789999998887532
Q ss_pred -C--hhhHHhHH--HHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHH
Q 000098 1936 -S--ASRRQGVC--IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLH 2010 (2256)
Q Consensus 1936 -~--~~vR~~a~--~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~ 2010 (2256)
. |..-.... .++-.+...-... ...+ .. -...-...-.-.|..|..+|..+.+.+|...++. +|.|++
T Consensus 367 ~seTP~~~~~~~~~~gILsl~k~~~~~---~~~~-~~--~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~-lP~Lw~ 439 (441)
T PF12054_consen 367 TSETPEFSHNVDKKDGILSLRKEEDKA---DHAD-AA--SEEREQKEARIQRRGAELALEQLAKRFGSSLFEK-LPKLWE 439 (441)
T ss_pred cccCCCCCCCcchhhcccchhhhcccc---cccc-cc--cchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHh-hhHHHh
Confidence 1 22110000 0000010000000 0000 00 0000001112347889999999999999988875 698887
Q ss_pred hh
Q 000098 2011 AL 2012 (2256)
Q Consensus 2011 ~L 2012 (2256)
.+
T Consensus 440 ~m 441 (441)
T PF12054_consen 440 CM 441 (441)
T ss_pred hC
Confidence 53
No 124
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.93 E-value=0.0037 Score=61.53 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=68.4
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchH
Q 000098 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2256)
Q Consensus 1578 ~p~L~~~L-~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~ 1656 (2256)
+|.+.+.+ +++++.+|..++.+++.+.. +..++.+...++|+++.||..++.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 35666666 78899999998888773322 2568888899999999999999999998752 5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2256)
Q Consensus 1657 ~lip~Ll~~L~~~~~~~~R~~aa~~L~ 1683 (2256)
..++.|.+.+.++++..+|..++.+||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 688888888888777777888887775
No 125
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=4.7 Score=57.66 Aligned_cols=252 Identities=15% Similarity=0.171 Sum_probs=141.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~ 1457 (2256)
.++..+...+-... ...+.+|...-..+.+.+++..++++...+...+..-......++..--+.+-.+. .+.+..+-
T Consensus 181 e~L~~ll~~lv~~~-~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~ 258 (1266)
T KOG1525|consen 181 ELLDVLLENLVKPG-RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLL 258 (1266)
T ss_pred HHHHHHHHHhccCC-CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHH
Confidence 44555544443221 22233333333444555555556665554443332111111122222222222221 12233446
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH-H
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-A 1536 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~ 1536 (2256)
.++|.|...|..++-.+|..|+.++|.|...-..++...++.++...+..+.|.++.||.++.+...++.-. +|.+ .
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN--NPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--Cchhhh
Confidence 678888888999999999999999999988766677777889999999999999999999999998887643 4544 2
Q ss_pred h--HHHHHHhhhCCCChhHHHHHHHHHh-cccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh-c----C
Q 000098 1537 S--LVPTLLMGLTDPNDHTKYSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V----T 1608 (2256)
Q Consensus 1537 ~--lv~~Ll~~l~d~~~~vr~al~~L~~-~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~-l----~ 1608 (2256)
. +.-.+.....|++..+|. ..++. +.+. ...-...+.++..+...+.|+.+.||..|..-+..+.+. + .
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~--~v~i~~~~v~-~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~ 413 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRT--QVVIVACDVM-KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSA 413 (1266)
T ss_pred HHHHHHHHHhhcCChhhhhee--eEEEEEeehh-HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 222333344455444431 00000 0000 000011122566677788899999999999888877762 1 1
Q ss_pred CCCcchhhhhhhhHHHHHhhcCCCHHHH
Q 000098 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2256)
Q Consensus 1609 ~~~~l~~~l~~Ll~~L~~~L~d~~~~VR 1636 (2256)
+.+.+.+-...+-..+..++-..+.+.|
T Consensus 414 ~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 414 GGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred CcccccccccccchhHHhhHhhccccHH
Confidence 2233334444444555666555545555
No 126
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.89 E-value=0.0069 Score=68.36 Aligned_cols=113 Identities=25% Similarity=0.317 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCC
Q 000098 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2256)
Q Consensus 1898 ~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~ 1977 (2256)
++.+|..+.-++|+++...+ ..++..+|.+...+.|+++.+|..++..+..++.. + +...-+.++..+..++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d---~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D---MIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C---ceeehhhhhHHHHHHHcCC
Confidence 46789999999999998765 45677788899999999999999999999988753 1 1122355667777889999
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccC
Q 000098 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2256)
Q Consensus 1978 ~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2256)
+++||..|...|..+...-++..+.+.+|.++..|.+.
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 99999999999999998766777777888888777664
No 127
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.023 Score=69.79 Aligned_cols=284 Identities=18% Similarity=0.211 Sum_probs=162.6
Q ss_pred HHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhh
Q 000098 1196 GIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1196 ~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
|+.-++..+-.-|+.+..+++.+++. -.+|....+-.-.+-.+..++..+ .. -.++...+-+++.. +. ..
T Consensus 392 GalyalGLI~Agfgr~~TeYL~e~~~--~teDe~~~~l~yG~~LGiGL~~Mg-Sa-n~eiye~lKe~l~n-D~-----a~ 461 (926)
T COG5116 392 GALYALGLIKAGFGREDTEYLLEYFL--DTEDELTPELAYGVCLGIGLINMG-SA-NREIYEKLKELLKN-DR-----AL 461 (926)
T ss_pred ceeeeehhhccCcCcccHHHHHHHhC--cccccccHHHHHHHHhhhcchhcc-cc-cHHHHHHHHHHHhc-ch-----hh
Confidence 44556665555577666666654441 233433333333333333333322 11 12344445455443 11 12
Q ss_pred hhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHc-CCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHH
Q 000098 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL-NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L-~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~v 1354 (2256)
.-++++..+|-+. +.... ...++.|...- .+..+.+.+...-.+.-+++..++.+ ..++..|..+.+.-.
T Consensus 462 ~geAa~~gMGl~m--Lgt~s---~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~a----dd~I~ell~d~ds~l 532 (926)
T COG5116 462 LGEAAVYGMGLLM--LGTWS---VEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMA----DDYINELLYDKDSIL 532 (926)
T ss_pred hhhhhhhccceee--ecCCC---HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHH----HHHHHHHhcCchHHh
Confidence 3345555554332 11111 22344444322 23334455544444444444333333 345556667778889
Q ss_pred HHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC-Cc
Q 000098 1355 RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD-QV 1433 (2256)
Q Consensus 1355 R~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D-~~ 1433 (2256)
|-+.+.+++.-..+.|.. .++..+....-++.|..+|.+|+.+++.+|-.-. ..++..++.+.+ .+
T Consensus 533 Ry~G~fs~alAy~GTgn~-----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN 599 (926)
T COG5116 533 RYNGVFSLALAYVGTGNL-----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHN 599 (926)
T ss_pred hhccHHHHHHHHhcCCcc-----hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccc
Confidence 998888888766665532 3555555553333477889999998887764322 234444444444 58
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCH
Q 000098 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513 (2256)
Q Consensus 1434 ~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~ 1513 (2256)
+.||-..+-+++..+...+.. .-+..+-..+.|..-.+|++|+-+++.+.-.+.+++.+....|...+..+..|.|.
T Consensus 600 ~hVR~g~AvaLGiacag~G~~---~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 600 FHVRAGVAVALGIACAGTGDK---VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred hhhhhhhHHHhhhhhcCCccH---HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 899998888888776544432 22233333345778889999999999999888888888889999999999988875
Q ss_pred H
Q 000098 1514 K 1514 (2256)
Q Consensus 1514 ~ 1514 (2256)
+
T Consensus 677 ~ 677 (926)
T COG5116 677 S 677 (926)
T ss_pred h
Confidence 4
No 128
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.80 E-value=0.038 Score=65.44 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=54.9
Q ss_pred HHHHHHhcc-CCChhHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hHH
Q 000098 1460 LPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIA 1536 (2256)
Q Consensus 1460 lp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~-~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i~ 1536 (2256)
+..++..|+ ..++..+..++.+++..+..... .+... -..++.+...+.++++.||..|.+++.+++....+. .++
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 344555555 35666666677777766543222 22222 266788899999999999999999999998665443 345
Q ss_pred hHHHHHHh
Q 000098 1537 SLVPTLLM 1544 (2256)
Q Consensus 1537 ~lv~~Ll~ 1544 (2256)
..++.+++
T Consensus 93 ~~i~~Vc~ 100 (254)
T PF04826_consen 93 MYIPQVCE 100 (254)
T ss_pred HHHHHHHH
Confidence 55555554
No 129
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.79 E-value=3 Score=53.89 Aligned_cols=422 Identities=16% Similarity=0.143 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHhccCchHhHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHhhhhHh------hHHhHHHHHHHhcc-
Q 000098 1398 GALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLLKGLE- 1468 (2256)
Q Consensus 1398 ~al~al~~L~~~l~~~~~pyv~-~llp~ll~~l~D~~-~~VR~aa~~al~~l~~~l~~~------~v~~ilp~Ll~~L~- 1468 (2256)
+....++.++.+..+.+...+. ..++.++..+.+++ ..+++++..+++.+....+.. .-+.+++.+...+.
T Consensus 72 ~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~ 151 (678)
T KOG1293|consen 72 GFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSI 151 (678)
T ss_pred hHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhh
Confidence 4444555655555444555544 35788899999988 899999999999987654321 12455655544444
Q ss_pred CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCC
Q 000098 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTD 1548 (2256)
Q Consensus 1469 ~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d 1548 (2256)
+.....+..+ ......+..-.++..-+-..+...+.-++...+..+|.+|..++.+-+..+.++....+ .++..+.|
T Consensus 152 ~lk~~~~l~~-~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm--~~l~~L~d 228 (678)
T KOG1293|consen 152 ELKYISRLDV-SRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSM--FLLGLLKD 228 (678)
T ss_pred hhhhhhhhhh-hhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHH--HHHHHHhc
Confidence 2222222211 11111111111121111123333333344445788999999888864444443321100 01111111
Q ss_pred CChhHHHHHHHHHhcccccCCChhhHhhHHH--HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-------hhhh
Q 000098 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVP--IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-------YIGL 1619 (2256)
Q Consensus 1549 ~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p--~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-------~l~~ 1619 (2256)
.. +.+ .+.+.++++....|..++..+..++.. +..++-.+ ..+.
T Consensus 229 ~~--------------------------v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~-s~~~d~l~~~~~~~dmgd~ 281 (678)
T KOG1293|consen 229 KG--------------------------VNIRCVVTRLLKDPDFSERLRSLECLVPYLRK-SFNYDPLPWWFIFFDMGDS 281 (678)
T ss_pred cc--------------------------cchhhhhhhhhhCCCccHHHHHHHHHHHHHhc-cccccccccceeeccCchH
Confidence 11 111 234455566666666677777776653 21111111 1111
Q ss_pred hhH--HHHHhhcCCCHHHHHHHHHHH---HHHHHhhCcC-c---hHHHHHHHHHHhhc--CCCHHHHHHHHHH---HHHH
Q 000098 1620 LLP--EVKKVLVDPIPEVRSVAARAI---GSLIRGMGEE-N---FPDLVSWLLDALKS--DNSNVERSGAAQG---LSEV 1685 (2256)
Q Consensus 1620 Ll~--~L~~~L~d~~~~VR~~a~~aL---~~L~~~~g~~-~---~~~lip~Ll~~L~~--~~~~~~R~~aa~~---L~~i 1685 (2256)
.+- .....++||-+..-..+.... ..++...... + .....+.++....+ ......|.-++.. +...
T Consensus 282 ~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~ 361 (678)
T KOG1293|consen 282 LIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHL 361 (678)
T ss_pred HHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhh
Confidence 111 122234455443222222211 1133322211 1 11222222222211 0111122222211 1222
Q ss_pred HHHhcHhHHHHH-----HHHHHHhccCCCHHHHHHHHHHHHHhHhhhC---hhHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000098 1686 LAALGTVYFEHI-----LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAILDGLADENESVRDAA 1757 (2256)
Q Consensus 1686 ~~~~g~~~l~~l-----l~~ll~~l~~~~~~vR~~al~~l~~La~~~g---~~f~~yl~~ilp~Ll~~L~d~~~~VR~~A 1757 (2256)
....|...-+++ +..+.......+..++.+++.++-.++.... ..+ --..++.++++.+.|++-.|...+
T Consensus 362 ~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~--~~~dv~~plvqll~dp~~~i~~~~ 439 (678)
T KOG1293|consen 362 EYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL--KRNDVAQPLVQLLMDPEIMIMGIT 439 (678)
T ss_pred hhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC--ccchhHHHHHHHhhCcchhHHHHH
Confidence 222222211222 2222222334577788888888876665432 222 234678888899999999999999
Q ss_pred HHHHHHHHHHhhcc---ch-hchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHH
Q 000098 1758 LGAGHVLVEHYATT---SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2256)
Q Consensus 1758 l~al~~iv~~~~~~---~~-~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l 1833 (2256)
+.++..+|-.|++- -+ .-.+..++....+....+|..++..+.++.|.. |+. .....
T Consensus 440 lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~--------------de~-----~k~~~ 500 (678)
T KOG1293|consen 440 LGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC--------------DEE-----EKFQL 500 (678)
T ss_pred HHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------------hHH-----HHHHH
Confidence 99999988776642 11 236677888888999999999999999887631 110 00111
Q ss_pred HHHhcchhhHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHHhcChhH
Q 000098 1834 IEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2256)
Q Consensus 1834 ~~~Lg~e~~~~vl~-~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~ 1878 (2256)
. .++-. .+....+|+.+.|.+.+...+..+.-+....
T Consensus 501 ~--------~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 501 L--------AKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred H--------HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 1 11222 2333468999999999999999887765443
No 130
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.094 Score=59.92 Aligned_cols=237 Identities=18% Similarity=0.197 Sum_probs=134.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCC--ChhhHHhHHHHHHHHHHhhChhhhHhhHh
Q 000098 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2256)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~l~ 1964 (2256)
+..+.+...+.+....-..+.+||+... .+-+|.+...+.|. .|-+|..+..+|+.+. .+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-------~~Av~~l~~vl~desq~pmvRhEAaealga~~-----------~~ 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-----------DP 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-----------ch
Confidence 3334444445444555556666665543 45566666666654 4778888888887653 13
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCc--hHHHHHHHHHHHhhhcccchhhhhh
Q 000098 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILP 2042 (2256)
Q Consensus 1965 ~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~~lp~li~ 2042 (2256)
.+.+.+.+...|+-..||+....|+..+-...+.....+..|+.- .++.- ....+..++..+-......+
T Consensus 100 ~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S---vdPa~p~~~ssv~~lr~~lld~t~~l~----- 171 (289)
T KOG0567|consen 100 ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS---VDPAPPANLSSVHELRAELLDETKPLF----- 171 (289)
T ss_pred hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc---CCCCCccccccHHHHHHHHHhcchhHH-----
Confidence 356666777788888888877666666643222111111111100 00000 00011112111110000000
Q ss_pred hhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcC
Q 000098 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVG 2122 (2256)
Q Consensus 2043 ~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~ 2122 (2256)
...+++-+|-. .|. ..-+.++...+.++..-.|..+.-+++.+-. +.-+|.|.+.|.
T Consensus 172 ---------~Ry~amF~LRn-~g~------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 172 ---------ERYRAMFYLRN-IGT------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLL 228 (289)
T ss_pred ---------HHHhhhhHhhc-cCc------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHH
Confidence 11122222111 111 3456677778887877789999888888765 233444444443
Q ss_pred C--CChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc
Q 000098 2123 D--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2123 ~--~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~ 2182 (2256)
+ +++.+|-.|+++||.++. ++.+..|...++|+++-||+.+.-+|.-.-.
T Consensus 229 d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3 458999999999999976 3457778888999999999999888876543
No 131
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=6.8 Score=56.52 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhccC
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRL 1413 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~--~~~~~Re~al~al~~L~~~l~~~ 1413 (2256)
.+....+...+.....+.+|+-.+.+++.+... |+ .+..+..+......+.|. +++....++..+++.+-+..|+.
T Consensus 50 ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd-~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~ 127 (2067)
T KOG1822|consen 50 LKLEQQLISRLTNGAGPPTRKLISVAIARLISN-GD-SFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRM 127 (2067)
T ss_pred HHHHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cc-hhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHh
Confidence 345566777777777899999999999999987 43 333345555555556554 45666667788888888888876
Q ss_pred chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH----h-hHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhh
Q 000098 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----Q-GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2256)
Q Consensus 1414 ~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~----~-~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~ 1488 (2256)
...-....+..+.+..+..+..+|.....++......++. + ..+.+.-.....+.+.+..+|.++..++.++...
T Consensus 128 ~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 128 IGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhh
Confidence 5555666677777777767777777776666665555542 1 1245555555666777778999999998888876
Q ss_pred ChhhH-hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1489 APQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1489 ~p~~l-~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
.+..+ ...+...-...+....+.+.+||-+-+++++.+....
T Consensus 208 ~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 208 GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 54443 3444555555666778889999999999999988765
No 132
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.62 E-value=0.042 Score=62.08 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCCh
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~ 1937 (2256)
+.||..++.+++.++...|..+.+++|.+... |.|+++.+|..|..+|..++..--..+-+.++..+...+.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~----L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKC----LRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 46899999999999988888777777777654 58999999999999999998753333455665666677889999
Q ss_pred hhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHH
Q 000098 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2256)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l 1970 (2256)
.+|..+...+.++....++..+..++.+++..+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999999987755554544444444433
No 133
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.22 Score=57.79 Aligned_cols=258 Identities=17% Similarity=0.209 Sum_probs=149.1
Q ss_pred CHHHHHH---HHHHHHHHHHhh-CccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH----hhHHHH
Q 000098 1898 SSERRQV---AGRALGELVRKL-GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPT 1969 (2256)
Q Consensus 1898 ~~~~R~~---A~~aL~~lv~~~-~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l----~~li~~ 1969 (2256)
|+..|+. ...||..+.+.. |....+.+.|.|..++..++..++.-+|..++.+++.|....+...+ ..+++.
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 3444554 556666666643 44567899999999999888999999999999999999865443322 468888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhcc-CCchHHHHHHHHHHHhhhcccchhhhhhhhhcCc
Q 000098 1970 IRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2256)
Q Consensus 1970 l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~-~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p 2048 (2256)
+..++..++.+|-.+|.+++..+... |.-++.+-. +......+..|.. +.+.
T Consensus 133 ildcIggeddeVAkAAiesikrialf----------paaleaiFeSellDdlhlrnlaa----kcnd------------- 185 (524)
T KOG4413|consen 133 ILDCIGGEDDEVAKAAIESIKRIALF----------PAALEAIFESELLDDLHLRNLAA----KCND------------- 185 (524)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhc----------HHHHHHhcccccCChHHHhHHHh----hhhh-------------
Confidence 88999999999999999988887641 222222211 1111111111100 0010
Q ss_pred hhhhHHHHHHHHHHHhC--CCccccH--hhHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhc-chhc--HHHHHHHHHhh
Q 000098 2049 LSAFNAHALGALAEVAG--PGLNFHL--GTILPALLSAMGD-DDMDVQSLAKEAAETVTLVI-DEEG--VESLVSELLKG 2120 (2256)
Q Consensus 2049 ~~~~~~~aL~~La~~~g--~~l~~~l--~~Ilp~Ll~~l~~-~~~~vr~~a~~al~~l~~~~-~~~~--~~~ll~~Ll~~ 2120 (2256)
..+.+++.-+.+.+. +....+. .-++..|...+.. .|.-++...++....+...- +.++ -..+++.+...
T Consensus 186 --iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 186 --IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred --HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 122333333333321 1111111 2356666666655 44455655555555555421 1121 12244444443
Q ss_pred c--CCCChhhHHHHHHHHHHHHHhc------hhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccC
Q 000098 2121 V--GDNQASIRRSSAYLIGYFYKNS------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2121 l--~~~~~~vR~~A~~~l~~l~~~~------~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
+ .|.+|-.+--+....|.|+.+. .......++..+...+.++...|++...+|..++|.+....
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 3 2334544555666777776532 22233344556677777778888999999999999876543
No 134
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.59 E-value=0.26 Score=60.83 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=82.5
Q ss_pred HHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH
Q 000098 1885 VLMNTLI-SSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2256)
Q Consensus 1885 ~Ll~~L~-~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l 1963 (2256)
.+++.++ ..+.+.+..+|..|.+|||-.+- +..+...+.++.+.+.+...+..+|..++.++.+++...|...+....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 4444333 56688999999999999997774 333444555666666665557889999999999999888876554333
Q ss_pred --------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000098 1964 --------DELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1964 --------~~li~~l~~~L~D~~~~VR~~A~~al~~l~~ 1994 (2256)
..+...+.+.+.+.++++|..|++++..+.-
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 4688888888988899999999999998875
No 135
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.56 E-value=0.071 Score=66.92 Aligned_cols=230 Identities=18% Similarity=0.229 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHhhccc---cccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhcc-----CCcchHHHHHH
Q 000098 1233 RGRMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK-----DDPKVHAVVDK 1304 (2256)
Q Consensus 1233 R~~a~~a~~~~i~~~g~~---~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~-----~~~~i~~il~~ 1304 (2256)
+..+++....+...++.. .++..+...|++|... +....+|.+-..++.+|+.+++.... ..|.+..+++.
T Consensus 113 K~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~-~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~ 191 (370)
T PF08506_consen 113 KAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKI-SQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEK 191 (370)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHH
Confidence 334444444444444322 3455666677777653 22334556667788888887753211 11223333332
Q ss_pred HH-HHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHH
Q 000098 1305 LL-DVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL 1383 (2256)
Q Consensus 1305 Ll-~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L 1383 (2256)
++ ..+.-.+.+ ...+.++-.+++.+=++ .++....|++|...+.++++..+..... .++..+
T Consensus 192 VI~Pnl~~~e~D------------~ElfEddP~EYIrrd~e---~sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i 254 (370)
T PF08506_consen 192 VIFPNLCLREED------------EELFEDDPEEYIRRDLE---GSDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYI 254 (370)
T ss_dssp THHHHHS--HHH------------HHHHHHSHHHHHHHHSC---SS---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred hccCccCCCHHH------------HHHHccCHHHHHHhhcc---ccccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHH
Confidence 21 111111110 11123445677776443 2333456777777778888776543332 234445
Q ss_pred HHHHh-----CCCCHHHHHHHHHHHHHHHHHhc------c------CchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 000098 1384 REGLA-----DRNSAKRREGALLAFECLCEKLG------R------LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAAR 1445 (2256)
Q Consensus 1384 ~~~l~-----~~~~~~~Re~al~al~~L~~~l~------~------~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~ 1445 (2256)
.+.+. ...+|+.+++|+..++.++.... . .+..+. ..++|.+. .-.+..+-+|-.|.+.+.
T Consensus 255 ~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~ 333 (370)
T PF08506_consen 255 QQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLY 333 (370)
T ss_dssp HHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHH
Confidence 54443 35689999999999999986531 1 123333 34566665 444567888888888888
Q ss_pred HHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHH
Q 000098 1446 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2256)
Q Consensus 1446 ~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~ 1481 (2256)
.+-+.++++.+..++|.+...|.+++.-++..|+.+
T Consensus 334 ~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 334 TFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 888888888889999999999999988887776654
No 136
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.035 Score=64.66 Aligned_cols=180 Identities=19% Similarity=0.193 Sum_probs=123.3
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH---
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--- 1535 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i--- 1535 (2256)
.+...+..|++++|..+..++..+..++..-++.+...|..++..+++-++.....|-++||.++..+...+.+.-.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788999999999999999999989999999999999999999999999999999999999988765432
Q ss_pred HhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1536 ASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
+.++-.|+..-.+.+.-+|+ +-++|... +. ...-+.+++.+..++.+.++.+|..++....+....++-.....
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aM--V~---~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAM--VN---HVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHH--Hh---ccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 33443443333333444553 33444321 11 11224567777778888899999988866655544333222334
Q ss_pred hhhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
++...+.+.+.+-+.|.-|.+|+.+-..+
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhHHH
Confidence 45556667777777777777775554433
No 137
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.55 E-value=5.1 Score=53.37 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1419 IQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1419 ~~llp~ll~~l~-D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
..++-.++..++ |+...||.++...+..+..+....+. +..+-.|-....|..-.+|..++..|+.+....|.-++-
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~- 653 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSL- 653 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhh-
Confidence 345667777776 88889999999888888777765554 333444444455777777888899999888776654311
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
-..-+-.++..++|.+..|...|..-+.++.
T Consensus 654 ~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 654 SSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 1233445666789999999998887665544
No 138
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=0.23 Score=63.64 Aligned_cols=224 Identities=18% Similarity=0.145 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHhhhccCC---cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC---c-hHHHHHHHHHHHhcCC
Q 000098 1278 EGVVIFTGALAKHLAKDD---PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---E-APTLVSRLLDQLMKSD 1350 (2256)
Q Consensus 1278 ~~av~~L~~La~~l~~~~---~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~---~-~~~~l~~Ll~~L~~~~ 1350 (2256)
+.++.++..+...++..+ .-+..++.-++.....++..||..+...|..++...++ + +..+...++..+.+ .
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D-r 138 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD-R 138 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc-c
Confidence 345666666665554332 23455666677788889999998887777777663322 2 34555666666654 4
Q ss_pred CHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcC
Q 000098 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2256)
Q Consensus 1351 ~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~ 1430 (2256)
.+.||..|..+|..+=..-+.+ ..++...+...++++.++++|.+++..+. -. ..-+|.++....
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de---e~~v~n~l~~liqnDpS~EVRRaaLsnI~---vd---------nsTlp~IveRar 203 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE---ECPVVNLLKDLIQNDPSDEVRRAALSNIS---VD---------NSTLPCIVERAR 203 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCCcHHHHHHHHHhhc---cC---------cccchhHHHHhh
Confidence 5899999999998775433333 33788888889999889999998876432 11 123567778888
Q ss_pred CCcHHHHHHH-HHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc
Q 000098 1431 DQVVAVREAA-ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2256)
Q Consensus 1431 D~~~~VR~aa-~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~ 1509 (2256)
|-+..+|..+ ..++..+ .+-...+++.+-.+-.++.|.+..+|.++...+.. ++-... ..=++.+++.+.
T Consensus 204 DV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~---~Wl~~~----dgni~ElL~~ld 274 (892)
T KOG2025|consen 204 DVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS---GWLRFS----DGNILELLERLD 274 (892)
T ss_pred hhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH---HHhhhc----cccHHHHHHHhc
Confidence 8888888876 3344444 33333456666667778888888888887765542 221111 111223444454
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 000098 1510 DT-HPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1510 D~-~~~VR~aA~~aL~~l 1526 (2256)
-+ ..+|+..+.++|-..
T Consensus 275 vsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 275 VSNSSEVAVKALEALFSG 292 (892)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 33 348888888887663
No 139
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.11 Score=59.47 Aligned_cols=216 Identities=21% Similarity=0.249 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC
Q 000098 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD--THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~ 1550 (2256)
--++....+||++.. ..-+|.+...+.| .+|.||..|..+|++++. + ..++.+-+..+||-
T Consensus 51 llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~----~---~~~~~l~k~~~dp~ 113 (289)
T KOG0567|consen 51 LLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----P---ESLEILTKYIKDPC 113 (289)
T ss_pred hhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc----h---hhHHHHHHHhcCCc
Confidence 334455566666543 2456777777765 578899999999999872 2 33455556667887
Q ss_pred hhHHH-HHHHHHhcccccC------------CC--hhhHhhHHHHHHHhhcCCC-H-HHHHHHHHHHHHHhhhcCCCCcc
Q 000098 1551 DHTKY-SLDILLQTTFVNT------------VD--APSLALLVPIVHRGLRERS-A-ETKKKAAQIVGNMCSLVTEPKDM 1613 (2256)
Q Consensus 1551 ~~vr~-al~~L~~~~~~~~------------~~--~~~l~~i~p~L~~~L~d~~-~-~vR~~a~~~l~~L~~~l~~~~~l 1613 (2256)
..+++ |.-++......+. .+ .|....-++-+...+.|.+ + --|..+...+.+...
T Consensus 114 ~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-------- 185 (289)
T KOG0567|consen 114 KEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-------- 185 (289)
T ss_pred cccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--------
Confidence 77764 3333322111110 11 1101111233333333322 2 223333333333321
Q ss_pred hhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1614 ~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~-~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
+.-+..+...+.+++.-.|-.++-++|.+-. +.-+|.|.+.|.+. +.+-+|..++.+|+.+..
T Consensus 186 ----EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----- 249 (289)
T KOG0567|consen 186 ----EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----- 249 (289)
T ss_pred ----HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----
Confidence 1235566677777888889888888887764 45677777777664 345589999999988753
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhH
Q 000098 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2256)
Q Consensus 1693 ~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f 1731 (2256)
+..++.+.+.+.|+.+-||+++..++..+--..|+.|
T Consensus 250 --e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 250 --EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred --HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 3455567777888999999998877765544334443
No 140
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.31 E-value=1 Score=58.50 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~il 1739 (2256)
..++...+. +...+.-+++-+..+...+.. .-+..+..++..+.|.+..||..++..+..+|+.-++ |+..+.
T Consensus 26 ~~il~~~kg--~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kva 98 (556)
T PF05918_consen 26 KEILDGVKG--SPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVA 98 (556)
T ss_dssp HHHHHGGGS---HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHH
T ss_pred HHHHHHccC--CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHH
Confidence 334444443 455677777777777666532 3466778888889999999999999988888877544 788899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000098 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1740 p~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll 1803 (2256)
..|.++|..+++..+..+-.++..+...-....+..++..+... ...+..+|..++..+..-+
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHH
Confidence 99999999888777777777777776544333333344444311 1234567888887775544
No 141
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.29 E-value=0.05 Score=70.13 Aligned_cols=187 Identities=15% Similarity=0.226 Sum_probs=138.8
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
.-..++|.+.+++...+..+|..-.+-+..+...+.. ..+.+.+.|.+...+.|.++.+|+.+.+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 4456899999999999999998877777777765543 235667899999999999999999999999999999987
Q ss_pred Cch-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHH-HHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD-IIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1653 ~~~-~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~-ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
..+ .+++..+-. ++.|+....|.....+++.+...+.......++.. +...+.|+-...|.+....+......+..
T Consensus 403 ~~Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHHHh-hCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 733 456666644 44466666888888888887766555444444432 33456777777888877776655554443
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
...-.+|+|.+....-|++..||+.|..++.....
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 23456788888888889999999999988776544
No 142
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.28 E-value=8.7 Score=53.09 Aligned_cols=164 Identities=13% Similarity=0.265 Sum_probs=115.8
Q ss_pred hc-HhHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 000098 1689 LG-TVYFEHILPDIIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGH 1762 (2256)
Q Consensus 1689 ~g-~~~l~~ll~~ll~~l~~----~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~-d~~~~VR~~Al~al~ 1762 (2256)
.| +..+..+.|.+...+++ .+|..+.+|.-+++.+...-. .|.+.-+|.++..+. .+++.+|.++.-+++
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~Vvalg 986 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALG 986 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchhecc
Confidence 35 33556777888887755 378899999888886654322 355666788888887 778999999888887
Q ss_pred HHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhh
Q 000098 1763 VLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2256)
Q Consensus 1763 ~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~ 1842 (2256)
.+.-.|.. .++..-+.+-+.+.|++..+|..|+-.+..++.+ .++.+=|
T Consensus 987 Dlav~fpn-lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--------------------------dmiKVKG---- 1035 (1251)
T KOG0414|consen 987 DLAVRFPN-LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--------------------------DMIKVKG---- 1035 (1251)
T ss_pred chhhhccc-ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--------------------------hhhHhcc----
Confidence 77655532 3455667788888999999999999999888632 1111112
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 000098 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTL 1890 (2256)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L 1890 (2256)
.++.+-.++.|++..++..|-..|+.+.... ..+-.++|.++..+
T Consensus 1036 --ql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~L 1080 (1251)
T KOG0414|consen 1036 --QLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRL 1080 (1251)
T ss_pred --cHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhh
Confidence 3444556788999999999999999998765 45555666555443
No 143
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.21 E-value=0.61 Score=55.79 Aligned_cols=226 Identities=15% Similarity=0.152 Sum_probs=141.2
Q ss_pred hhhhhHHHHHHHHHHhhhccC---CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh---cCchHHHHHHHHHHHh
Q 000098 1274 DLVREGVVIFTGALAKHLAKD---DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM---QDEAPTLVSRLLDQLM 1347 (2256)
Q Consensus 1274 ~~vr~~av~~L~~La~~l~~~---~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~---~~~~~~~l~~Ll~~L~ 1347 (2256)
+.+|..++.+|+.+...++++ ...+..++.-+...+.|. ..+.. +..++..++... .+....++..+++...
T Consensus 13 ~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 13 PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVKMKNFSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHhCcCCChhhHHHHHHHHHHhCC
Confidence 478999999999998887753 223455555555566432 22333 356666666322 1223344444444322
Q ss_pred c-CCCHHHHHHHHHHHHHHHhhhCcccch-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHH
Q 000098 1348 K-SDKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2256)
Q Consensus 1348 ~-~~~~~vR~~Aa~~L~~lv~~~g~~~~~-~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~l 1425 (2256)
- +-....|......+..++.......-. ....+..+.+.+..++||+.--.+...+..+...+. +.++..++...+
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~ 168 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVF 168 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHh
Confidence 1 113567888888888888765321110 125667777889999999887777776666666665 366777776665
Q ss_pred HHHc--------CCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh-hHhhh
Q 000098 1426 LVAF--------SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQC 1496 (2256)
Q Consensus 1426 l~~l--------~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~-~l~~~ 1496 (2256)
...+ +|+...-|+.-..++...+...+ .--+..+|.+++.|.+....+|..+++.|...+...+. .+.++
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~ 247 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPH 247 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5443 34433344444555555543222 11267899999999999999999999999888876643 46666
Q ss_pred hhhHHHHH
Q 000098 1497 LPKIVPKL 1504 (2256)
Q Consensus 1497 L~~Ivp~L 1504 (2256)
...|+..+
T Consensus 248 ~~~iw~~l 255 (262)
T PF14500_consen 248 WSTIWNAL 255 (262)
T ss_pred HHHHHHHH
Confidence 66666655
No 144
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.13 E-value=0.17 Score=60.01 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-cccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cC
Q 000098 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 1413 (2256)
Q Consensus 1337 ~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g-~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~--~~ 1413 (2256)
+.+..++..|...+++.++..+..+++..+.... .+.....+.++.+...+.++ ++.+|+.|+.++..++.... ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHH
Confidence 3456667767667778888888888876543211 12222335677777777765 88999999998887765433 23
Q ss_pred chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh
Q 000098 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2256)
Q Consensus 1414 ~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~ 1492 (2256)
.+.|+.+++..+... .-+..+..++..++..+.-.-.. +.+...+|.++..+..++-.+|..++.+|..+++.. ..
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~~ 167 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP-DM 167 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH-HH
Confidence 456666666655442 23567777777777776422111 234667888899999888899999999999988752 21
Q ss_pred Hhhhh-hhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhcCch
Q 000098 1493 LSQCL-PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1493 l~~~L-~~Ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
....+ .+.++.++.+++.. ..++...+...+.++.+.++.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11111 14556667777654 6778888888888888777643
No 145
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.04 E-value=0.0098 Score=45.53 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1500 Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
|+|.+.++++|++++||.+|+.+|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 146
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.90 E-value=0.033 Score=71.66 Aligned_cols=190 Identities=21% Similarity=0.194 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000098 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~ 1414 (2256)
++..+...+-.|+...+..+|.--.+.+..++..+..+.+. ..|+|.+...+.|. ++..|+..+.++..++..++..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~-d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILN-DQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhc-chhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh-
Confidence 44445556666778888899998888888888888766553 46899999888887 8999999999999999888752
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHH-HhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll-~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
..=.+++..+-..-.|++..+|.-..-|++.+..++.+...+.++...+ ..+.|.....|.+++..+.......+..
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~- 481 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS- 481 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh-
Confidence 2233566666666668889999988889998887776554445554443 4577888888999888776655544433
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
..-..|+|.+....-|+++.||..|..++..+...+
T Consensus 482 -~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 482 -EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred -hhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 223478888888999999999999999998887654
No 147
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=9.8 Score=50.23 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcC-C-CCHHHHHHHHHHHHHHHHhhcCCCcccc
Q 000098 1738 VLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-N-DNWRIRQSSVELLGDLLFKVAGTSGKAL 1814 (2256)
Q Consensus 1738 ilp~Ll~~L~d~-~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~-d-~~~~iR~~sv~llg~ll~~~~g~~~~~~ 1814 (2256)
.++.+...+... -.+=|..|+++++.+.+.|.......-++.+.+-+. | .+..+-..+++.+-.+..+ +.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~-----dd-- 95 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH-----DD-- 95 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc-----Cc--
Confidence 344444443322 234478888999988887765433333333333332 2 2344444555555544311 00
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHH---HHHHHHHH
Q 000098 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM---PVLMNTLI 1891 (2256)
Q Consensus 1815 ~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l---~~Ll~~L~ 1891 (2256)
.....|++...+..+..+++.+-. ..+.+..+...+..-+..||-.++..+.++..+-|..++..+ |.-+..++
T Consensus 96 -~~~v~dds~qsdd~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 96 -SPEVMDDSTQSDDLGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred -chhhcccchhhhHHHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 000111222233344455554421 123444555556666788999999999999998887777654 66677788
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhCcc----chhchHHHHhhhc
Q 000098 1892 SSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGL 1932 (2256)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~l 1932 (2256)
..+.|..+.+|..+...|.++++..+.- .++.++..|...+
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsII 217 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSII 217 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999866532 2344444444444
No 148
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.81 E-value=2.3 Score=56.27 Aligned_cols=368 Identities=17% Similarity=0.204 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC--chHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccc
Q 000098 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--EAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSL 1374 (2256)
Q Consensus 1298 i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~ 1374 (2256)
+...++.++.-|.+|+..||..+.+.+..+....+. ...-.+..|++...+.+ ...+|.-+..-+..-+..+..+
T Consensus 21 L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~-- 98 (501)
T PF13001_consen 21 LDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDE-- 98 (501)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHH--
Confidence 455667777888999999999999999988877743 44556777888877665 5667765544443222222111
Q ss_pred hhhcHHHHHHHHHhCCCCHHH--HHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHH--HHH-HHHHHHh
Q 000098 1375 KKYGIAATLREGLADRNSAKR--REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA--AEC-AARAMMS 1449 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~--Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~a--a~~-al~~l~~ 1449 (2256)
.+..++|.+.+.+......+. .......|..+++.+.. ...-. ... ..+...|+. -.+ +...+..
T Consensus 99 e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~-~~~~~--------~~~-~~~~~~~~~~~l~~~~~~~~l~ 168 (501)
T PF13001_consen 99 ERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPD-WKEPP--------RGS-KEDEKFRDSLGLSDFCDDVFLA 168 (501)
T ss_pred HHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCc-ccccc--------ccc-hhhhcHHHHHhhcchHHHHHcc
Confidence 122677777777753211110 00111112222222110 00000 000 000111111 000 0000000
Q ss_pred hhhH-------------hhH----HhHHHH-HHHhc-cCCC--------hhHHHHHHHHHHHHHhhChhhHhhhhhhHHH
Q 000098 1450 QLSA-------------QGV----KLVLPS-LLKGL-EDKA--------WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502 (2256)
Q Consensus 1450 ~l~~-------------~~v----~~ilp~-Ll~~L-~~~~--------w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp 1502 (2256)
.... .+. ...+.. -.+.+ .... -+.|.+.+..+..... ++ ...++
T Consensus 169 ~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f--~d------~~~~~ 240 (501)
T PF13001_consen 169 PWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFF--PD------EERFP 240 (501)
T ss_pred hhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCC--Cc------HhHHh
Confidence 0000 000 000000 00011 1111 1245555555554333 11 13344
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhcCchh-HHhHHHHHH--hhhCC----C-ChhHHH-HHHHHHhcccccCCChhh
Q 000098 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-IASLVPTLL--MGLTD----P-NDHTKY-SLDILLQTTFVNTVDAPS 1573 (2256)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~-i~~lv~~Ll--~~l~d----~-~~~vr~-al~~L~~~~~~~~~~~~~ 1573 (2256)
.++-.-.|++.+|...|-..|+++...+.++. ++.++.... ..-.+ | +..+|. .+..|.+.... ...
T Consensus 241 ~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A----a~~ 316 (501)
T PF13001_consen 241 PLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA----ATS 316 (501)
T ss_pred heeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH----HhC
Confidence 44445578899999999999999987766554 355555554 11111 1 122332 33333331000 112
Q ss_pred HhhHHHHHHHhhcCC--CHHHHHHHHHHH---HHHhhhcCCCCcchhhhhhhhHHHHHhhc--------CCCHHHHHHHH
Q 000098 1574 LALLVPIVHRGLRER--SAETKKKAAQIV---GNMCSLVTEPKDMIPYIGLLLPEVKKVLV--------DPIPEVRSVAA 1640 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~--~~~vR~~a~~~l---~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~--------d~~~~VR~~a~ 1640 (2256)
.+.++.++..++.+. +.+.|..+.+.+ .+..... .+..+...-+.+...+...+. ..+...|..+.
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~-~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI-SPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhc-CHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 234666777777776 567777777887 6665532 212222222333333333342 24678999999
Q ss_pred HHHHHHHHhhCcCc--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1641 RAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1641 ~aL~~L~~~~g~~~--~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
++||.++.....-. --.++.+|++.|. ++...+|...-.+|+.++..+..
T Consensus 396 e~lG~L~~~~p~l~~~d~~li~~LF~sL~-~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFSKDLSLIEFLFDSLE-DESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHhh-CcchHHHHHHHHHHHHHHHHHhc
Confidence 99999998765432 2358999999994 45666888888889888877643
No 149
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.23 Score=63.19 Aligned_cols=150 Identities=25% Similarity=0.346 Sum_probs=110.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc----chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh-
Q 000098 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM- 1650 (2256)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~----l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~- 1650 (2256)
+.-|.+.++|+-++..||..|+..+-++.-+ .++.. +...++.-...+..++.|+.|.||..|...+..+...+
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999998888774 45433 22333333446778899999999999998887776544
Q ss_pred ---CcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc-HhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh
Q 000098 1651 ---GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2256)
Q Consensus 1651 ---g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g-~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~ 1726 (2256)
++....+++..+.+.+..|....+|.....++..++..-- -..++.++|.+-..+.|....||.++..++..+-.+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 3334556666677777777777899999999888764322 225678888887888899999999988887765443
No 150
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.73 E-value=0.35 Score=62.44 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHhHHH-HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHhhcCC
Q 000098 1434 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDT 1511 (2256)
Q Consensus 1434 ~~VR~aa~~al~~l~~~l~~~~v~~ilp-~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~-L~~Ivp~L~~~L~D~ 1511 (2256)
-.-|-.|+.+++.++..++......++. .++.+|.+..--.|..+...+..++......-... .+.+.+.|...|+++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4568889999999999998877777776 58899999999999999999999998765432111 345566666666643
No 151
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.69 E-value=2.7 Score=54.81 Aligned_cols=123 Identities=16% Similarity=0.164 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCC
Q 000098 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936 (2256)
Q Consensus 1857 ~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~ 1936 (2256)
+..++..|.+.+..+....|.--.+-+..+++ ...+.+..+|..|.+.|..+|+. ..++.+.+...|.+.|..++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~D----LcEDed~~iR~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLD----LCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHH----HHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH----HHhcccHHHHHHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhccc
Confidence 46688889999988888888765555555544 45899999999999999999985 34578899999999999888
Q ss_pred hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000098 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2256)
Q Consensus 1937 ~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al 1989 (2256)
+..+..+-.+|.+++..-....+. .++..+... ...++.+|+.+...+
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~tL~----~lf~~i~~~-~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKGTLT----GLFSQIESS-KSGDEQVRERALKFL 157 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHH----HS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHhc-ccCchHHHHHHHHHH
Confidence 887777777777776543332222 222222211 145677898765544
No 152
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=11 Score=48.38 Aligned_cols=221 Identities=12% Similarity=0.215 Sum_probs=126.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC---c--h-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-
Q 000098 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---E--A-------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF- 1369 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~---~--~-------~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~- 1369 (2256)
......++ +...-+.+.+|+-.+.+...+ . + ...++..+..-...++...+.+.+.-+..+....
T Consensus 202 ~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~ 279 (559)
T KOG2081|consen 202 TLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFV 279 (559)
T ss_pred HHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 33344444 233445566776665554411 1 1 1122333333334456666665555555444422
Q ss_pred -----CcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--------cCchHhHHHHHHHHHHHcCCC----
Q 000098 1370 -----GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--------RLFEPYVIQMLPLLLVAFSDQ---- 1432 (2256)
Q Consensus 1370 -----g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~--------~~~~pyv~~llp~ll~~l~D~---- 1432 (2256)
+++.. ..++..+.-... +.++++-+..+..+-.+.+.+- ..|.||..+++..+.....=+
T Consensus 280 ~~i~~np~~~--l~~vellLl~~~-h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~ 356 (559)
T KOG2081|consen 280 VLISTNPEEF--LRIVELLLLVAG-HNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQF 356 (559)
T ss_pred HHHhhCCCcc--hhHHHHHHHhcc-CCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccc
Confidence 22211 133433333323 3367777777777777776531 357899988888877654311
Q ss_pred --------cHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHH
Q 000098 1433 --------VVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2256)
Q Consensus 1433 --------~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~ 1503 (2256)
-..-|....+.+..+...+++... +...-.+.+ ....|+.-.+++..+..++...+..-...+|+++..
T Consensus 357 ~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~ 434 (559)
T KOG2081|consen 357 DLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKL 434 (559)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHH
Confidence 124566666777766655554432 333333322 457899999999999999998766555555666555
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
+.++= ....+|..++.-++.+.+++..
T Consensus 435 i~nlp--~Q~~~~~ts~ll~g~~~ew~~~ 461 (559)
T KOG2081|consen 435 ICNLP--EQAPLRYTSILLLGEYSEWVEQ 461 (559)
T ss_pred HhCCc--cchhHHHHHHHHHHHHHHHHHh
Confidence 44332 2233999999999999988753
No 153
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=13 Score=48.96 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh
Q 000098 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2256)
Q Consensus 1879 l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~ 1958 (2256)
+..++..++..+... ...+..|...--+++.++..+|+.++|.+=..+...+.|.++..-.+...-+.+++..... .
T Consensus 693 f~~~ldvil~~ls~f--~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~-~ 769 (980)
T KOG2021|consen 693 FSNILDVILVTLSFF--NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKT-D 769 (980)
T ss_pred HHHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-H
Confidence 444555555544322 2356789999999999999999998887766666677787887777777777777765542 2
Q ss_pred hHhhHhhHHHHHH
Q 000098 1959 LLSFMDELIPTIR 1971 (2256)
Q Consensus 1959 l~~~l~~li~~l~ 1971 (2256)
..+.+.+++|.+.
T Consensus 770 ~~~ilnqmlppll 782 (980)
T KOG2021|consen 770 CYQILNQMLPPLL 782 (980)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555443
No 154
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.45 E-value=11 Score=47.83 Aligned_cols=174 Identities=21% Similarity=0.161 Sum_probs=111.7
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
..+.++..+.+++..++..||..+++++..+...++...+ .....++..+..-+-|..+.||..|..++..+-+--+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455666788888889999999999999999886643211 23445666777777799999999999999988765443
Q ss_pred CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh-H
Q 000098 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-F 1731 (2256)
Q Consensus 1653 ~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~-f 1731 (2256)
+ -..+...+...+++|++..+|+.+...+.. -....|.++..+.|.+...|..+. ..+-..+|+. +
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~v---------dnsT~p~IlERarDv~~anRr~vY---~r~Lp~iGd~~~ 232 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNISV---------DNSTYPCILERARDVSGANRRMVY---ERCLPRIGDLKS 232 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHeee---------CCCcchhHHHHhhhhhHHHHHHHH---HHHhhhhcchhh
Confidence 3 245666778888899999999876543321 123456677777776666555422 1122222221 1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000098 1732 QNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2256)
Q Consensus 1732 ~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~ 1762 (2256)
..--+.+. .+--++.|.+..|+.++.+++.
T Consensus 233 lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 233 LSIDKRIL-LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred ccccceeh-hhhhcchhhhhhHHHHHHHHHH
Confidence 00111122 3445677777788877766543
No 155
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=95.37 E-value=6.3 Score=50.94 Aligned_cols=169 Identities=20% Similarity=0.294 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhCcC------------chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHH
Q 000098 1631 PIPEVRSVAARAIGSLIRGMGEE------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2256)
Q Consensus 1631 ~~~~VR~~a~~aL~~L~~~~g~~------------~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll 1698 (2256)
.....|..-++|+..+...+-+. +.+.++..+.+.+.+ .+..+|-.++.++++++..++-...+.++
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss-~~~~~rf~~a~~~aki~srl~w~l~~sfi 286 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSS-IDSFVRFSAAKGLAKIISRLPWNLAESFI 286 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCccc-ccHHHHHHHHhhHHHHHhhcccccHHHHH
Confidence 44556666666776666544331 233455555555544 45568999999999999888765433333
Q ss_pred H---HHHHh-----ccC------CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCC--------HHHHHH
Q 000098 1699 P---DIIRN-----CSH------QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--------ESVRDA 1756 (2256)
Q Consensus 1699 ~---~ll~~-----l~~------~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~--------~~VR~~ 1756 (2256)
. ...++ +++ .++.+--+++..++ ++...+-+....+ +.|.+.++++-++ ..+|+.
T Consensus 287 ~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRds 363 (993)
T COG5234 287 DIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDS 363 (993)
T ss_pred HHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeecc
Confidence 3 11111 111 25556666666565 6766666543332 5666667766443 257787
Q ss_pred HHHHHHHHHHHhhccchhc----hHHHHHh-hcCCCCHHHHHHHHHHHHHHH
Q 000098 1757 ALGAGHVLVEHYATTSLPL----LLPAVED-GIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1757 Al~al~~iv~~~~~~~~~~----llp~L~~-~l~d~~~~iR~~sv~llg~ll 1803 (2256)
++--++.+...+.....+. +.-.+.+ .++|+.-.+|.++..++-+++
T Consensus 364 s~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 364 SCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred cceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 7666666555555444333 2233333 678999999999887776664
No 156
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=95.25 E-value=35 Score=52.33 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=59.2
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchh
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~ 1534 (2256)
.+++.+.+..--.|.+|+..++.++..+|..+-++++.++..+...+.|+++.+|..||.++.......++..
T Consensus 138 ~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~ 210 (2341)
T KOG0891|consen 138 RLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE 210 (2341)
T ss_pred HHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc
Confidence 3334444445556778889999999999999989999999999999999999999999999998877665544
No 157
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.22 E-value=3.6 Score=54.53 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCC--CHHHHHHHHHHH---HHHHhhcchhcHHHHHHHH----HhhcC-
Q 000098 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDD--DMDVQSLAKEAA---ETVTLVIDEEGVESLVSEL----LKGVG- 2122 (2256)
Q Consensus 2053 ~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~--~~~vr~~a~~al---~~l~~~~~~~~~~~ll~~L----l~~l~- 2122 (2256)
..+.|..|.+..... ..++.++..+...+.++ +..+|..+..-+ ..++..++...+..+-+.+ .+.+.
T Consensus 300 q~kIL~~L~kS~~Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~ 377 (501)
T PF13001_consen 300 QEKILSLLSKSVIAA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQD 377 (501)
T ss_pred HHHHHHHHHHhHHHH--hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccccc
Confidence 456777776543221 23466667777777666 566777777777 6666666555444444433 33342
Q ss_pred -------CCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC
Q 000098 2123 -------DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2256)
Q Consensus 2123 -------~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~ 2186 (2256)
..+...|..++++||.++...+.-+..- -.++.-|+..+.++++++|-+.-+||+.++.....
T Consensus 378 ~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 378 SSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 2347789999999999999877655222 46677888888999999999999999999877654
No 158
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.21 E-value=4.5 Score=60.19 Aligned_cols=308 Identities=12% Similarity=0.024 Sum_probs=173.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcc-------chhchHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhhHhhHhhH
Q 000098 1895 ASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~l 1966 (2256)
.+++..++..|...|.+++-++-+. +..+++..+...+. ..+.++|..+..++.+++...+. .+....+.+
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-nIkSGWktI 1225 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-NVKSGWKSM 1225 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-hhhcCcHHH
Confidence 3446677888888888887655322 33556666655444 34678999999999999987764 456677889
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-------hhHHhHHHHHHHhhccC---CchHHHHHHHHHHHhhhcccc
Q 000098 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------QAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAV 2036 (2256)
Q Consensus 1967 i~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~-------~~~~~ilp~Ll~~L~~~---~~~~~al~~L~~il~~~~~~~ 2036 (2256)
+..+..+..+.++.+-+.|.+++..++...-. ..+.+++..|.+--.+. +.+=.+++-|..+...-.+.-
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99988888888888877777777766653221 23333443333322222 122234444433211100000
Q ss_pred hhhhhh-h-hhcCch-hhhHHHHHHHHHHHhC-CCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchh----
Q 000098 2037 LPHILP-K-LVHLPL-SAFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE---- 2108 (2256)
Q Consensus 2037 lp~li~-~-L~~~p~-~~~~~~aL~~La~~~g-~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~---- 2108 (2256)
+..... . ...++. +..............+ .....++-.++-.|.+...++..+||..|+..+=+++...|..
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 000000 0 000000 0000000000000001 1111233334444444456788999999999998888766541
Q ss_pred c----HHHHHHHHHhhcCCC------------------C------h--hhHHHHHHHHHHHHHhchhhhhhhHHHHHHHH
Q 000098 2109 G----VESLVSELLKGVGDN------------------Q------A--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 2158 (2256)
Q Consensus 2109 ~----~~~ll~~Ll~~l~~~------------------~------~--~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L 2158 (2256)
. ...++-.++..++.. + | .....|+..+..++.+.-..+.+.++.++..|
T Consensus 1386 ~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll 1465 (1780)
T PLN03076 1386 LWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLL 1465 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 333444444333210 0 1 33444556666666655556677888888888
Q ss_pred HHHcCCCChHHHHHHHHHHHHhhccCC----CCchhchHHHHHHHHhhh
Q 000098 2159 IVLLSDSDSTTVAAAWEALSRVVASVP----KEVQPSYIKVIRDAISTS 2203 (2256)
Q Consensus 2159 ~~~l~D~d~~Vr~~A~~aL~~l~~~l~----~e~l~~lv~~l~~~l~~~ 2203 (2256)
..++..++..+-+....||-.++...+ .+++...+..+.+....+
T Consensus 1466 ~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1466 VSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999887654 356777777776666544
No 159
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.17 E-value=3.2 Score=49.80 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=144.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhccc-----hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCC
Q 000098 1744 DGLADENESVRDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818 (2256)
Q Consensus 1744 ~~L~d~~~~VR~~Al~al~~iv~~~~~~~-----~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~ 1818 (2256)
..|.++++.+|..|+..+..++..+.... +..++..+.+.+. +|..-..++..+..+... ...
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~--------- 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF--------- 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC---------
Confidence 45778899999999999998888776442 3345555555553 343333445555555411 000
Q ss_pred CCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHh-c
Q 000098 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL-A 1895 (2256)
Q Consensus 1819 ~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~--~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L-~ 1895 (2256)
+.+....++..++... ..-....|.....++..+..+....+..+-+.++..++... +
T Consensus 74 -------------------~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g 134 (262)
T PF14500_consen 74 -------------------SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG 134 (262)
T ss_pred -------------------ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc
Confidence 0001112233333221 12234578888999988888776666655556666655554 4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCc-cchhchHHHHhhhc--------CCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhH
Q 000098 1896 SSSSERRQVAGRALGELVRKLGE-RVLPSIIPILSRGL--------KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2256)
Q Consensus 1896 ~~~~~~R~~A~~aL~~lv~~~~~-~~l~~llp~L~~~l--------~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~l 1966 (2256)
+.++.--..+.+.+..+...... .+.+++...+.-.+ +|+..-+|.....+|...+.+. ..|.+..
T Consensus 135 EkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-----~~fa~~~ 209 (262)
T PF14500_consen 135 EKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-----PLFAPFA 209 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-----HhhHHHH
Confidence 56777777777777777665543 24445444443222 1222234555555555444321 1344678
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhcc
Q 000098 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014 (2256)
Q Consensus 1967 i~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~ 2014 (2256)
+|.+.+-+....+.++..+..++.......|...+...+..+|+.|+.
T Consensus 210 ~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 210 FPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999989988888888888877654
No 160
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.15 E-value=5.7 Score=50.68 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc--chhc--hHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000098 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPS--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2256)
Q Consensus 1881 ~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~--~l~~--llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2256)
+++..|+..+. .+.++..-..|+.=+|++++..+.+ .+.+ .-..+.+.+.++++++|..+..|+..++.
T Consensus 353 ~llk~L~~iL~---~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLE---TSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHh---cCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34444444431 3556777788899999999987433 3322 22335566778899999999999887753
No 161
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.04 E-value=2.2 Score=52.66 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=96.0
Q ss_pred HHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH-hh
Q 000098 1418 VIQMLPLLL-VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQ 1495 (2256)
Q Consensus 1418 v~~llp~ll-~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l-~~ 1495 (2256)
+..++..++ .++..+++.||+.+..+++-++- +........++.+...+..++-.+|..|+.++..+.-..+... ..
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 346665544 67888899999999999998753 3333446678888888876788999999999998886644322 11
Q ss_pred --------hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh--hcCc-hh-HHhHHHHHHhhhCCCChhHHHHHHHHH
Q 000098 1496 --------CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS--VIKN-PE-IASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2256)
Q Consensus 1496 --------~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~--~i~~-~~-i~~lv~~Ll~~l~d~~~~vr~al~~L~ 1561 (2256)
.-..++..+.+.+.+.++++|..|++++..+.- .+.+ +. +..++-....--..++...|.++....
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 224688888999999999999999999988653 2333 32 233333333333333445666655544
No 162
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.98 E-value=0.036 Score=42.41 Aligned_cols=30 Identities=43% Similarity=0.722 Sum_probs=26.4
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
++|.+.+.++|++|+||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999864
No 163
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.95 E-value=30 Score=49.95 Aligned_cols=288 Identities=16% Similarity=0.206 Sum_probs=154.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCc--h----hHHhHHHHHHhhh---CCCC-hhH-H--HHHHHHHhcccccCCChhh
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKN--P----EIASLVPTLLMGL---TDPN-DHT-K--YSLDILLQTTFVNTVDAPS 1573 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~--~----~i~~lv~~Ll~~l---~d~~-~~v-r--~al~~L~~~~~~~~~~~~~ 1573 (2256)
+|++++..||.-.+-|+..+...+.+ | .+..++..+++.+ .|.. ++. | .-++.+....|.-..+-+.
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 57889999999999999999888763 2 3455666555544 3432 222 2 2344444422222222222
Q ss_pred HhhHHHHHHH----hhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1574 LALLVPIVHR----GLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1574 l~~i~p~L~~----~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
-..+++.+.+ .+++..+.--.. ++.-+..++.....+. ..++.++..|...-.|.....+..+...+...+.
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~ 214 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD 214 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence 2333333333 332222211111 2221222222212221 2233333333333334455555555555555555
Q ss_pred hhCcCchHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHh---cHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Q 000098 1649 GMGEENFPDLVSWLLDALKSDNS--NVERSGAAQGLSEVLAAL---GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 1723 (2256)
Q Consensus 1649 ~~g~~~~~~lip~Ll~~L~~~~~--~~~R~~aa~~L~~i~~~~---g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~L 1723 (2256)
.+.+. +-..+...+..+.. ...+. -..+++..+ ..+.+-.++|.+..-+...+..+|..+...+|.+
T Consensus 215 ~~~~~----i~~f~~~~~~~~~s~~~~~~~----~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~ 286 (1266)
T KOG1525|consen 215 NLEDT----IANFLNSCLTEYKSRQSSLKI----KYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRM 286 (1266)
T ss_pred hhchh----HHHHHHHHHhhccccccchhh----HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44333 33333333332221 00111 122222221 2335667888888888899999999999999988
Q ss_pred HhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh------------------c---------------
Q 000098 1724 PRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA------------------T--------------- 1770 (2256)
Q Consensus 1724 a~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~------------------~--------------- 1770 (2256)
-..-+..+..-.+.+....+..+.|....||..+.+....+.-+.. .
T Consensus 287 ~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v 366 (1266)
T KOG1525|consen 287 FSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDV 366 (1266)
T ss_pred HhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeeh
Confidence 7666554443346677788888999999999888776554332100 0
Q ss_pred -----cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1771 -----TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1771 -----~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
..++.++..+.+.+.|..|+||..|+.-+..+..+
T Consensus 367 ~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 367 MKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 01122444555667899999999999999998753
No 164
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=11 Score=44.43 Aligned_cols=356 Identities=14% Similarity=0.146 Sum_probs=172.2
Q ss_pred CHHHHHH---HHHHHHHHHHh-hccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCC-cch-----
Q 000098 1229 NADVRGR---MLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD-PKV----- 1298 (2256)
Q Consensus 1229 ~~~VR~~---a~~a~~~~i~~-~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~-~~i----- 1298 (2256)
|+..|.. ++.|...+++. .|......++|.+..-|.. +++.|+--++.-++.+.+..+..+ ..+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLia------ddasVKiLackqigcilEdcDtnaVseillvvN 126 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIA------DDASVKILACKQIGCILEDCDTNAVSEILLVVN 126 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccC------CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhh
Confidence 3444444 44555555543 3445567888888877654 223566667766666665544221 001
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhc
Q 000098 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2256)
Q Consensus 1299 ~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~ 1378 (2256)
..+++.++...-..+.+|.+++.+.+..+.. ++.-+..+|+.=..+ +...|.-|+.+= .++ ++.
T Consensus 127 aeilklildcIggeddeVAkAAiesikrial-----fpaaleaiFeSellD-dlhlrnlaakcn-dia---------RvR 190 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIAL-----FPAALEAIFESELLD-DLHLRNLAAKCN-DIA---------RVR 190 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-----cHHHHHHhcccccCC-hHHHhHHHhhhh-hHH---------HHH
Confidence 2344455555566666676666666554421 222333333322222 123333232221 011 122
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHhhhhHhh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG 1455 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~-D~~~~VR~aa~~al~~l~~~l~~~~ 1455 (2256)
++..+.+...-. + ....|. ..++..+...+. ..+.-|+-.+.+....++..-.+..
T Consensus 191 VleLIieifSiS--p-------------------esaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgre 249 (524)
T KOG4413|consen 191 VLELIIEIFSIS--P-------------------ESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGRE 249 (524)
T ss_pred HHHHHHHHHhcC--H-------------------HHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhh
Confidence 333333222111 0 011111 234555554443 3566777777776666664333322
Q ss_pred H---HhHHHHHHHhcc--CCChhHHHHHHHHHHHHHh------hChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1456 V---KLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAY------CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2256)
Q Consensus 1456 v---~~ilp~Ll~~L~--~~~w~~R~~a~~~Lg~la~------~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2256)
+ ..++..+...+. |.++..+.-++...|.+.. ..++++-..++..+...++...-.+|....+|..+++
T Consensus 250 flaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalG 329 (524)
T KOG4413|consen 250 FLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALG 329 (524)
T ss_pred hcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHH
Confidence 2 234444444433 3444444444444443332 2466666777777888888888888999999999999
Q ss_pred HHHhhcCchhH-----HhHHHHHHhhhCCCChh--HHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1525 QVGSVIKNPEI-----ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1525 ~l~~~i~~~~i-----~~lv~~Ll~~l~d~~~~--vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
.++.......+ ..-...++...-|.+.+ ...+++.|..+.-..+... ....|.....| .-|
T Consensus 330 ilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkp-----------eqitDgkaeer-lrc 397 (524)
T KOG4413|consen 330 ILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKP-----------EQITDGKAEER-LRC 397 (524)
T ss_pred hccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCCh-----------hhccccHHHHH-HHH
Confidence 99876532221 11122233333333322 2223333332110000000 00111111222 223
Q ss_pred HHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1598 QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1598 ~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
.+....+.. + .+.| +..+...++.|.|++|-++.+.+.+++.
T Consensus 398 lifdaaaqs-t---kldP-----leLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 398 LIFDAAAQS-T---KLDP-----LELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHHHHhhc-c---CCCh-----HHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 344444431 1 1122 3456677888999999999999998885
No 165
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.58 Score=55.01 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH---hHHHHHHHhc
Q 000098 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK---LVLPSLLKGL 1467 (2256)
Q Consensus 1391 ~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~---~ilp~Ll~~L 1467 (2256)
++|...-.++..+..++..-.+.+.+.+..++..+.+.+++....|-.+|..++..++..+...... ..+-.|+..-
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka 179 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKA 179 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3788888888888888877666677778888888999999999999999999999999888765432 3333333333
Q ss_pred cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000098 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1468 ~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~ 1531 (2256)
..++-.+|..|-.+|.+|......+ .+++.|..++.+.++.+|..++.++..+...++
T Consensus 180 ~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 180 SQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred cccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 4566778999999999999887554 566777778999999999999988877765554
No 166
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=52 Score=51.31 Aligned_cols=655 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHhc---cCchHhHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccC-CCh
Q 000098 1402 AFECLCEKLG---RLFEPYVIQMLPLLLVAFSDQVV-----AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-KAW 1472 (2256)
Q Consensus 1402 al~~L~~~l~---~~~~pyv~~llp~ll~~l~D~~~-----~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~-~~w 1472 (2256)
.|+....... +...||+..++..-+....+... .+-.+-...++.......-..+-+++|.+++.+.. ..-
T Consensus 612 ~F~sv~~f~~~nervl~phv~~Ii~~smela~~a~eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~ 691 (3550)
T KOG0889|consen 612 IFGSVSKFPSENERVLRPHVHDIISTSMELATTAPEPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSS 691 (3550)
T ss_pred hhhhhhcccccchhhcccchhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred hHHHHHHHHHHHHHhhChhh---HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCC
Q 000098 1473 RTKQSSVQLLGAMAYCAPQQ---LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~---l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~ 1549 (2256)
..+.+--+++..++-..|-. +.+++|-++..++.+++-+ ++.+..+..++.-......+.++..++
T Consensus 692 ~~s~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs-~~lvsQgLRtlelcvDnltPefL~~~m---------- 760 (3550)
T KOG0889|consen 692 FHSQGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGS-PELVSQGLRTLELCVDNLTPEFLDPIM---------- 760 (3550)
T ss_pred cCccchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCC-HHHHHHHHhHHHHHHhcCChHhhhHHH----------
Q ss_pred ChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhh------------
Q 000098 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY------------ 1616 (2256)
Q Consensus 1550 ~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~------------ 1616 (2256)
+|..+.++..+.+.+++. +...-..|..++|.+.. ...+.+.+.
T Consensus 761 ---------------------epv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG--~NRq~l~~~q~l~~~~~~~~~ 817 (3550)
T KOG0889|consen 761 ---------------------EPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLGG--RNRQFLKRPQDLEEIDEDDID 817 (3550)
T ss_pred ---------------------HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC--cchhhcccccccccccCcccc
Q ss_pred -----------------hhhhhHHHHHhhc--CCCHHHHHHHHHHHHHHHHhhCcCc--hHHHHHHHHHHhhc-------
Q 000098 1617 -----------------IGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKS------- 1668 (2256)
Q Consensus 1617 -----------------l~~Ll~~L~~~L~--d~~~~VR~~a~~aL~~L~~~~g~~~--~~~lip~Ll~~L~~------- 1668 (2256)
+.+.+..-..++. ..++..|..+...+.......-... +..-...+......
T Consensus 818 ~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~e 897 (3550)
T KOG0889|consen 818 IRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVNLSADFKSSIRQLLTLVVWSIDLRLE 897 (3550)
T ss_pred ceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhcchHHHhhH
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH
Q 000098 1669 -------------DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 1735 (2256)
Q Consensus 1669 -------------~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl 1735 (2256)
.....+|..-..++..++.+.....+...-..++..+ +|..++.+........+-.-....
T Consensus 898 ~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~i------l~~f~~~~~~~~~~~~~~~~~~~~ 971 (3550)
T KOG0889|consen 898 CCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAI------LRHFALHGVVLYTGSNQLKHSNFG 971 (3550)
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHH------HHHHHHHHHHHhhcchhccccccc
Q ss_pred HH-----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----------hhccchhchHHHHHhhcCCCCHHHHH
Q 000098 1736 QQ-----------VLPAILDGLADENESVRDAALGAGHVLVEH-----------YATTSLPLLLPAVEDGIFNDNWRIRQ 1793 (2256)
Q Consensus 1736 ~~-----------ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~-----------~~~~~~~~llp~L~~~l~d~~~~iR~ 1793 (2256)
.. +++.|...+..++..++.+...++..+... +.-..+..+++.+.....++.|.-|.
T Consensus 972 ~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~ 1051 (3550)
T KOG0889|consen 972 SNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKD 1051 (3550)
T ss_pred cccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHc
Q ss_pred HHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHH----HHHHHHH
Q 000098 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ----AALHVWK 1869 (2256)
Q Consensus 1794 ~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~----aA~~~l~ 1869 (2256)
+.+..++.+. ..+...---++..+++.+++..+.|...++.. .+-..+.
T Consensus 1052 gG~~gI~~l~---------------------------~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~ 1104 (3550)
T KOG0889|consen 1052 GGVNGIKCLI---------------------------ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILM 1104 (3550)
T ss_pred CCCceeeeeh---------------------------hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHH
Q ss_pred HHHhcC------hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-------chhch-HHHHhhhcCCC
Q 000098 1870 TIVANT------PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-------VLPSI-IPILSRGLKDP 1935 (2256)
Q Consensus 1870 ~l~~~~------~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~l-lp~L~~~l~d~ 1935 (2256)
.+...+ ...-......++..+...+.+++..+|..+..+|..+.+..|.. +.+-+ .|....-+..-
T Consensus 1105 ~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~ 1184 (3550)
T KOG0889|consen 1105 DILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRAL 1184 (3550)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccC
Q ss_pred ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccC
Q 000098 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2256)
Q Consensus 1936 ~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2256)
......|...++...+.....-.-..-.-..+-.....+.|.+ ..+.++ +.+...........+.
T Consensus 1185 p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~------~~~~~~-i~k~~~~k~~~~l~~L-------- 1249 (3550)
T KOG0889|consen 1185 PFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAE------EDELAT-IQKTSDYKNSSSLVRL-------- 1249 (3550)
T ss_pred CHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhh------hhhhhh-hhcccccccccccccc--------
Q ss_pred CchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhC------CCccccHhhHHHHHHHhhCCCCHH
Q 000098 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG------PGLNFHLGTILPALLSAMGDDDMD 2089 (2256)
Q Consensus 2016 ~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g------~~l~~~l~~Ilp~Ll~~l~~~~~~ 2089 (2256)
...++..++.+.- +...++-..|+..+++.+..+..+
T Consensus 1250 -------------------------------------r~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~E 1292 (3550)
T KOG0889|consen 1250 -------------------------------------RVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSE 1292 (3550)
T ss_pred -------------------------------------hhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHH
Q ss_pred HHHHHHHHHHHHHh---hcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHcCCC
Q 000098 2090 VQSLAKEAAETVTL---VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD-EAPNMISTLIVLLSDS 2165 (2256)
Q Consensus 2090 vr~~a~~al~~l~~---~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~-y~~~il~~L~~~l~D~ 2165 (2256)
+.+.+..++..+.. .++.+.++..+..++..+.|-.- .-....+.++.+.+-...-+.. +...++..+-..++|.
T Consensus 1293 i~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~-lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~ 1371 (3550)
T KOG0889|consen 1293 LIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNN-LSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWLEDE 1371 (3550)
T ss_pred HHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Q ss_pred ChHHHHHHHHH
Q 000098 2166 DSTTVAAAWEA 2176 (2256)
Q Consensus 2166 d~~Vr~~A~~a 2176 (2256)
..+-...++.+
T Consensus 1372 ~~~y~~~~l~~ 1382 (3550)
T KOG0889|consen 1372 VLDYLSGALKA 1382 (3550)
T ss_pred HHHHHhhhhcc
No 167
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.62 E-value=0.43 Score=52.79 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHhccCCCHHHHHHHHHHHHHh---Hhhh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYL---PRSL 1727 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~l~~~~~~vR~~al~~l~~L---a~~~ 1727 (2256)
+..++|.+++.|...+.+ -|.-|.+++.+++...|.+.+ .+++..+.+.+++.++.|...++.++..+ ....
T Consensus 36 y~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 567888888888874444 678888899999888555544 55566666788889999999999999999 7888
Q ss_pred ChhHHHHHHHHHHHHHHhcC------C-----CCHHHHHHHHHHHHHHHHHhhcc
Q 000098 1728 GVQFQNYLQQVLPAILDGLA------D-----ENESVRDAALGAGHVLVEHYATT 1771 (2256)
Q Consensus 1728 g~~f~~yl~~ilp~Ll~~L~------d-----~~~~VR~~Al~al~~iv~~~~~~ 1771 (2256)
|+.+.||+.+++|.+--..+ | ....+++...+++..+-++-|++
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 99999999999998872221 1 12345555556666554444443
No 168
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=23 Score=46.67 Aligned_cols=314 Identities=13% Similarity=0.085 Sum_probs=159.5
Q ss_pred hHhhHHhHHHHHHHhcc--------CCChhHHHHHHHHHHHHHhh--ChhhHhhhhh-hHHHHHHHhhcCCCHHHHHHHH
Q 000098 1452 SAQGVKLVLPSLLKGLE--------DKAWRTKQSSVQLLGAMAYC--APQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQ 1520 (2256)
Q Consensus 1452 ~~~~v~~ilp~Ll~~L~--------~~~w~~R~~a~~~Lg~la~~--~p~~l~~~L~-~Ivp~L~~~L~D~~~~VR~aA~ 1520 (2256)
+.+.+..+++.+...+. .++.+...+|+..+..+..- -+......+. -|++.+.+.++++.--.|..||
T Consensus 402 ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srac 481 (970)
T COG5656 402 KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRAC 481 (970)
T ss_pred chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHH
Confidence 33445677777776662 14677788899998888772 2333333333 3667788888999999999999
Q ss_pred HHHHHHHhhcCchhH-HhHHHHHHhhhCCCChhHH-H---HHHHHHhcccccCCChhhHhhHHHHHHHhhc---CCCHHH
Q 000098 1521 TALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTK-Y---SLDILLQTTFVNTVDAPSLALLVPIVHRGLR---ERSAET 1592 (2256)
Q Consensus 1521 ~aL~~l~~~i~~~~i-~~lv~~Ll~~l~d~~~~vr-~---al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~---d~~~~v 1592 (2256)
..+..+...+.++.+ ..+.....+++.+.+--++ + |++.++...-.| ....+.+.+.+.+.|. +-+.+.
T Consensus 482 e~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h---~k~sahVp~tmekLLsLSn~feiD~ 558 (970)
T COG5656 482 EFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSH---EKFSAHVPETMEKLLSLSNTFEIDP 558 (970)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhh---HHHHhhhhHHHHHHHHhcccccchH
Confidence 999999888877644 5667777777777544343 2 344443211111 1122223333333332 222232
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHH----hhc----CC---CHHH---HHHHHHHH---HHHHHhhCcCch
Q 000098 1593 KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK----VLV----DP---IPEV---RSVAARAI---GSLIRGMGEENF 1655 (2256)
Q Consensus 1593 R~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~----~L~----d~---~~~V---R~~a~~aL---~~L~~~~g~~~~ 1655 (2256)
-.. ++..+.+.. +.++.||.++++..+.+ +.. .+ ...+ +.+|...+ ..+.-.+. ..
T Consensus 559 LS~---vMe~fVe~f--seELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle--n~ 631 (970)
T COG5656 559 LSM---VMESFVEYF--SEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE--NR 631 (970)
T ss_pred HHH---HHHHHHHHh--HHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc--cc
Confidence 222 223333321 13466777777665554 221 11 1111 22222222 22222222 22
Q ss_pred HHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHHHHHhc--HhHHHHHHHHHHHhccC----CCH-HHHHHHHHHH
Q 000098 1656 PDLVSWLLDAL--------KSDNSNVERSGAAQGLSEVLAALG--TVYFEHILPDIIRNCSH----QRA-SVRDGYLTLF 1720 (2256)
Q Consensus 1656 ~~lip~Ll~~L--------~~~~~~~~R~~aa~~L~~i~~~~g--~~~l~~ll~~ll~~l~~----~~~-~vR~~al~~l 1720 (2256)
+.++..+...+ +++... .-. ...+++.++. ...+.++++.+.+.+.+ +.. .--+.+..++
T Consensus 632 p~vLk~le~slypvi~Filkn~i~d-fy~----Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al 706 (970)
T COG5656 632 PLVLKYLEVSLYPVISFILKNEISD-FYQ----EALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADAL 706 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHH-HHH----HHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHH
Confidence 33333333222 221111 111 1222333221 11235666666665443 221 2234455566
Q ss_pred HHhHhhhChhHH---HHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhhccchhchHHHH
Q 000098 1721 KYLPRSLGVQFQ---NYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSLPLLLPAV 1780 (2256)
Q Consensus 1721 ~~La~~~g~~f~---~yl~~ilp~Ll~~L~d~~~--~VR~~Al~al~~iv~~~~~~~~~~llp~L 1780 (2256)
..+....+.+|. .|..-+.......+..++. +=+..+++....++-+++++..++.+|.+
T Consensus 707 ~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plf 771 (970)
T COG5656 707 DNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLF 771 (970)
T ss_pred HHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHH
Confidence 666555554442 3555556666666666644 33556777777777777776666556644
No 169
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.42 E-value=2.4 Score=53.57 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhCc-----c----------
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS---LASSSSERRQVAGRALGELVRKLGE-----R---------- 1919 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~---L~~~~~~~R~~A~~aL~~lv~~~~~-----~---------- 1919 (2256)
...|.+|...+..++.+.+....+++...++.++.. -.+.+|..+..|...++.++.+... .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 457899999999998877766666665555555432 1345788899999999999864411 1
Q ss_pred -chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000098 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2256)
Q Consensus 1920 -~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al 1989 (2256)
+...++|-|. .-.+..|-.|..+|..+...-...++ +.+..++|.+..++.+++.-|+.-|+.|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1244455555 11233567788888877766554443 45677999999999999999998888663
No 170
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.38 E-value=2.1 Score=59.06 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=89.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh----
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---- 1454 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~---- 1454 (2256)
-+..+.+.+..++-... + +...+..+......--..++..+.+.+.......++.+|.+|.-+++.+....-..
T Consensus 396 av~~i~~~I~~~~~~~~-e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-E-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-H-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHcCCCCHH-H-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 34455556655422211 1 22333333333222123344444444332222356789999988888877653322
Q ss_pred ---------hHHhHHHHHHHhc----cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCC---CHHHHHH
Q 000098 1455 ---------GVKLVLPSLLKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSA 1518 (2256)
Q Consensus 1455 ---------~v~~ilp~Ll~~L----~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~---~~~VR~a 1518 (2256)
..+.+++.+...+ ...+-..+..++.+||.+.. +.+++.+...+.+. ...+|.+
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 1234455554444 45666788889999998743 46677777777765 7889999
Q ss_pred HHHHHHHHHhhcCchhHHhHHHHHHhhhCCCCh--hHH-HHHHHHHh
Q 000098 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTK-YSLDILLQ 1562 (2256)
Q Consensus 1519 A~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~--~vr-~al~~L~~ 1562 (2256)
|++||..+....+ ..+.+.++....|+.+ .+| .|+..|..
T Consensus 544 Ai~Alr~~~~~~~----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 544 AIQALRRLAKHCP----EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHTTTTGGGT-H----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCc----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 9999998865442 2334445555555543 456 45555543
No 171
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.34 E-value=25 Score=46.23 Aligned_cols=210 Identities=19% Similarity=0.121 Sum_probs=137.2
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
.++.++..+.++...++..||..+++++..+........ ....+.+...+..-+.|..|.||..|..||..+-..-++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid--d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID--DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC--HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 455667778888888899999999999988876322211 234567777888888899999999999999988753333
Q ss_pred CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH
Q 000098 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1653 ~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~ 1732 (2256)
+. -++...+...+++|+++++|+.+...++.= ...+|.++....|.+..+|..+..- +...+.-.+
T Consensus 160 ee-~~v~n~l~~liqnDpS~EVRRaaLsnI~vd---------nsTlp~IveRarDV~~anRrlvY~r---~lpkid~r~- 225 (892)
T KOG2025|consen 160 EE-CPVVNLLKDLIQNDPSDEVRRAALSNISVD---------NSTLPCIVERARDVSGANRRLVYER---CLPKIDLRS- 225 (892)
T ss_pred Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhhccC---------cccchhHHHHhhhhhHHHHHHHHHH---hhhhhhhhh-
Confidence 32 357778888899999999999876654321 3456778888888877777754332 121221111
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1733 NYLQQVLPAILDGLADENESVRDAALGAGHV-LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~-iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
--++.-+-.+-.++.|.+..|+.++.+++.. ....... .++..|.+.-.+.+.+++..+++.+=..
T Consensus 226 lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dg----ni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 226 LSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDG----NILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccc----cHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1223445566678999988999887776432 2222111 1333333333344447887777766543
No 172
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.28 E-value=0.52 Score=58.92 Aligned_cols=87 Identities=28% Similarity=0.376 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc----------CCCHHHHHHHHHHHHHHHHhhCcCc---hHHHHHHHH
Q 000098 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLL 1663 (2256)
Q Consensus 1597 ~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~----------d~~~~VR~~a~~aL~~L~~~~g~~~---~~~lip~Ll 1663 (2256)
..++..|.. +..-.+.+|+..++|.++.++. +.+|.+|+.|+..++.+++.++..| .+.++..+.
T Consensus 238 m~~v~ALl~--N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~ 315 (343)
T cd08050 238 MRMVRALLD--NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLL 315 (343)
T ss_pred HHHHHHHhc--CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 344444544 3335678999999999998872 4679999999999999999998763 234444555
Q ss_pred HHhhcCCC-HHHHHHHHHHHHHH
Q 000098 1664 DALKSDNS-NVERSGAAQGLSEV 1685 (2256)
Q Consensus 1664 ~~L~~~~~-~~~R~~aa~~L~~i 1685 (2256)
+.+.+... ....-||..+++.+
T Consensus 316 k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 316 KALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHcCCCCCcchhhHHHHHHHHh
Confidence 55554333 33467777777654
No 173
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.22 E-value=0.37 Score=53.31 Aligned_cols=116 Identities=10% Similarity=0.082 Sum_probs=86.6
Q ss_pred HhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc-ch---hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHH---HHhch
Q 000098 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYF---YKNSK 2144 (2256)
Q Consensus 2072 l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~-~~---~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l---~~~~~ 2144 (2256)
++..+|.+++.+...++..|-.|...+.+++... ++ +.++.++..|...+.+.++++...++.++..+ ....|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567889999998888888999999999999883 22 45677777888889999999999999999999 55678
Q ss_pred hhhhhhHHHHHHHHHHHcCC-----------CChHHHHHHHHHHHHhhccCCCC
Q 000098 2145 LYLVDEAPNMISTLIVLLSD-----------SDSTTVAAAWEALSRVVASVPKE 2187 (2256)
Q Consensus 2145 ~~~~~y~~~il~~L~~~l~D-----------~d~~Vr~~A~~aL~~l~~~l~~e 2187 (2256)
..+.||+.++++.+-...+. .+..+++...++|..+-+..++|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 88999999998877532221 12345555555555555444444
No 174
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=25 Score=50.27 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=102.6
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLC--EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~--~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~ 1455 (2256)
.++..+.+...+...|++|-+.+..+.... ..++ ..++...++-..+...+.|.+-.||+.|+.++.-++.---...
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 677777766677778999998777665543 2233 4567777888888899999999999999999887764211111
Q ss_pred HHhHHHHHHHhcc--CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1456 VKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1456 v~~ilp~Ll~~L~--~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
+............ ..+.-..++|+..||+++-..|-.+...+|..+..+....+++ .-++.++-+++..|-..-
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 1111122222222 3445567899999999999988876666666666655555665 667888888888776543
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.97 E-value=0.42 Score=53.42 Aligned_cols=136 Identities=24% Similarity=0.316 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhhhHH------------HHHhhcCCCHHHHHHHHHHHHHHHHhhC--------
Q 000098 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE------------VKKVLVDPIPEVRSVAARAIGSLIRGMG-------- 1651 (2256)
Q Consensus 1592 vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~------------L~~~L~d~~~~VR~~a~~aL~~L~~~~g-------- 1651 (2256)
+|..|..++..+++. .+++.+-.|++.++|. +..++.|+++++|..|+.++..+.++..
T Consensus 2 vR~~Al~~L~al~k~-~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKS-TDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHh-cCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 678888888888884 3667777777776663 3444679999999999999999877531
Q ss_pred ---cC-ch-----------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHH
Q 000098 1652 ---EE-NF-----------PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRAS 1711 (2256)
Q Consensus 1652 ---~~-~~-----------~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~ 1711 (2256)
+. .| -++-..|+..|..+.+.........+++.++....-+ .+..++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 11 1233445556666666666677778888888765544 4566667777778889999
Q ss_pred HHHHHHHHHHHhHhhhC
Q 000098 1712 VRDGYLTLFKYLPRSLG 1728 (2256)
Q Consensus 1712 vR~~al~~l~~La~~~g 1728 (2256)
+|..++.+++.+..+.+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
No 176
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.81 E-value=16 Score=54.76 Aligned_cols=279 Identities=11% Similarity=0.056 Sum_probs=155.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-------chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-
Q 000098 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV- 1692 (2256)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-------~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~- 1692 (2256)
-+.+...-.+++..++..|...|..++..+-+. +-.+++..+...+.+.....+|.....++..++...+..
T Consensus 1139 ~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nI 1218 (1780)
T PLN03076 1139 SDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV 1218 (1780)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444556778888888887877655321 234678878777777677789999999999999887754
Q ss_pred --HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhH----HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Q 000098 1693 --YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF----QNYLQQVLPAILDGLADE-NESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1693 --~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f----~~yl~~ilp~Ll~~L~d~-~~~VR~~Al~al~~iv 1765 (2256)
.++.++..+-....+.++.+-..++..+..+...+-..+ ...+..++..+....... +.++-..|+..++.+.
T Consensus 1219 kSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1219 KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred hcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 345666666555566666666666666665543211100 012233444444333322 2344444555555432
Q ss_pred HHhhcc------------------------------------chhc---hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 000098 1766 EHYATT------------------------------------SLPL---LLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2256)
Q Consensus 1766 ~~~~~~------------------------------------~~~~---llp~L~~~l~d~~~~iR~~sv~llg~ll~~~ 1806 (2256)
..+... .... ++-.+.+...|+...||..|++.+=+++..+
T Consensus 1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076 1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 222100 0011 2233334455777788888888887766332
Q ss_pred cCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc-----------------------CCcHHHHHH
Q 000098 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS-----------------------DVSLSVRQA 1863 (2256)
Q Consensus 1807 ~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~-----------------------D~~~~Vr~a 1863 (2256)
++. +.. ..+..+ +..++-.++.... |....+.++
T Consensus 1379 G~~--------------Fs~-~~W~~i--------f~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT 1435 (1780)
T PLN03076 1379 GHL--------------FSL-PLWERV--------FESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYET 1435 (1780)
T ss_pred hcc--------------CCH-HHHHHH--------HHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHH
Confidence 110 000 011111 1122222222210 111123455
Q ss_pred HHHHHHHHHh---cChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchh
Q 000098 1864 ALHVWKTIVA---NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922 (2256)
Q Consensus 1864 A~~~l~~l~~---~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~ 1922 (2256)
...++..++. +.-..+..+++.++..+..+...++...-..+..||..++...|..+-+
T Consensus 1436 ~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1436 CTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCH
Confidence 5555544443 3335567788888888888888899999999999999999888876543
No 177
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.75 E-value=1.7 Score=50.27 Aligned_cols=74 Identities=24% Similarity=0.365 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHH-HhcCCC-----HHHHHHHHHHHHHHHHhhCccc---hhchHHHHhhhcCCC--ChhhHHhHHH
Q 000098 1877 KTLKEIMPVLMNTLIS-SLASSS-----SERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDP--SASRRQGVCI 1945 (2256)
Q Consensus 1877 ~~l~~~l~~Ll~~L~~-~L~~~~-----~~~R~~A~~aL~~lv~~~~~~~---l~~llp~L~~~l~d~--~~~vR~~a~~ 1945 (2256)
+.+.+++|.++..++. .+++.. +.+|..|+..++-++..++..+ -|.+..++.+.+-|. ...+..|+..
T Consensus 273 PY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalk 352 (450)
T COG5095 273 PYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALK 352 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhh
Confidence 4455555555555543 444332 3489999999999999888764 467777666655443 3457788888
Q ss_pred HHHHH
Q 000098 1946 GLSEV 1950 (2256)
Q Consensus 1946 aL~ei 1950 (2256)
++..+
T Consensus 353 gls~l 357 (450)
T COG5095 353 GLSIL 357 (450)
T ss_pred hhhhh
Confidence 77643
No 178
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.75 E-value=1.7 Score=55.06 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=69.0
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHhhCccc---hhchHHHHhhhc
Q 000098 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLA----------SSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGL 1932 (2256)
Q Consensus 1866 ~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~----------~~~~~~R~~A~~aL~~lv~~~~~~~---l~~llp~L~~~l 1932 (2256)
.+..++..|..-.+.+|+..|++.++.++- +.+|.+|..|+..++.+|+.++..+ .+.+..++.+.+
T Consensus 269 ~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l 348 (576)
T KOG2549|consen 269 RMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKAL 348 (576)
T ss_pred HHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 344455555544455555555555544432 3468899999999999999988764 467777788877
Q ss_pred CCC--ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHh
Q 000098 1933 KDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2256)
Q Consensus 1933 ~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L 1974 (2256)
.|+ .....+|++.+|.++....-...+.|.+......+...+
T Consensus 349 ~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 349 LDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred cCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 776 467889999888877543222223344444444444333
No 179
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=34 Score=45.63 Aligned_cols=302 Identities=16% Similarity=0.152 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC--------CHHH-HHHHHHHHHHHHHhhCcc------chh
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS--------SSER-RQVAGRALGELVRKLGER------VLP 1922 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~--------~~~~-R~~A~~aL~~lv~~~~~~------~l~ 1922 (2256)
..+|.+|-..+..+..+.... ++|.+++.+-+..... +.-. +.+.-.++|.-.-.+... ...
T Consensus 411 y~lRPCaE~L~~~lF~~ysql---lvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~ 487 (978)
T KOG1993|consen 411 YNLRPCAEKLYKDLFDAYSQL---LVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQE 487 (978)
T ss_pred eccchhHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 448888888888777655444 3444444443222221 1112 233333444333332221 224
Q ss_pred chHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh--chh
Q 000098 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSA--GMQ 1999 (2256)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~-~~~VR~~A~~al~~l~~~~--g~~ 1999 (2256)
.++|.+.. -.+...-.|..+++-+++.+..--+..+. +-+...+...+.|. |.-||-+++.++...++.. ..+
T Consensus 488 ~llpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k---~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 488 ALLPELAN-DHGNSRIIRRRVAWILGQWVSVQQKLELK---PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred hhCHHhhh-cccchhHHHHHHHHHHhhhhheechHhHH---HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 44554441 11223446778888888887643332222 33455556677777 6778999999998887642 334
Q ss_pred hHHhHHHHHHH----hhcc---CCchHHHHHHHHHHHhhhcccchh------hhhhhhhcCchh-----hhHHHHHHHHH
Q 000098 2000 AIDEIVPTLLH----ALED---DQTSDTALDGLKQILSVRTTAVLP------HILPKLVHLPLS-----AFNAHALGALA 2061 (2256)
Q Consensus 2000 ~~~~ilp~Ll~----~L~~---~~~~~~al~~L~~il~~~~~~~lp------~li~~L~~~p~~-----~~~~~aL~~La 2061 (2256)
.+-.++|.+.. .+.. -+.+-..+.-+..++..-+..+-| ..+|.++..... .....++..++
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 44444444333 2322 122234444444444332222223 235666654322 23355677788
Q ss_pred HHhCCCccccHhhHHHHHHHhhCCCC---HHHHHHHHHHHHHHHhhcch--hcHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 000098 2062 EVAGPGLNFHLGTILPALLSAMGDDD---MDVQSLAKEAAETVTLVIDE--EGVESLVSELLKGVGDNQASIRRSSAYLI 2136 (2256)
Q Consensus 2062 ~~~g~~l~~~l~~Ilp~Ll~~l~~~~---~~vr~~a~~al~~l~~~~~~--~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l 2136 (2256)
...|..-.+..+-++|.+--....+. --.-+.+.+.....+..... +.+-.++|.++..+.-.... -..++..+
T Consensus 644 ~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~-L~t~l~Ii 722 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTEN-LPTVLMII 722 (978)
T ss_pred HHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhh-HHHHHHHH
Confidence 88888766777767777665553322 22345566666666665532 45566777777777543322 33445555
Q ss_pred HHH-HHhchhhhhhhHHHHHHHHHHHcCCCCh
Q 000098 2137 GYF-YKNSKLYLVDEAPNMISTLIVLLSDSDS 2167 (2256)
Q Consensus 2137 ~~l-~~~~~~~~~~y~~~il~~L~~~l~D~d~ 2167 (2256)
... .-..+.-...|...+...+...++|-..
T Consensus 723 ~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~ 754 (978)
T KOG1993|consen 723 SSYILLDNTVFLNDYAFGIFKKLNDLLDDVRN 754 (978)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 433 3334445666777777777777765433
No 180
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.30 E-value=1 Score=50.39 Aligned_cols=136 Identities=24% Similarity=0.266 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHH-hccCchHhHHHHHHHH-----------H-HHcCCCcHHHHHHHHHHHHHHHhhhhHhh-----
Q 000098 1394 KRREGALLAFECLCEK-LGRLFEPYVIQMLPLL-----------L-VAFSDQVVAVREAAECAARAMMSQLSAQG----- 1455 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~-l~~~~~pyv~~llp~l-----------l-~~l~D~~~~VR~aa~~al~~l~~~l~~~~----- 1455 (2256)
++|.+|+.++..+++. .++.|-.|...++|.- + -.+.|+++.||.+|+.++..+......+-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3689999999999999 5578888988887643 2 34679999999999999988775432210
Q ss_pred ------------------HHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhh--HhhhhhhHHHHHHHhhcCCCHH
Q 000098 1456 ------------------VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPK 1514 (2256)
Q Consensus 1456 ------------------v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~--l~~~L~~Ivp~L~~~L~D~~~~ 1514 (2256)
+..+-..++..+. +.+...-...++++..+....|-. -...++.++..+...+.+.++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1112223333343 345555666788888888776632 2345677888888888899999
Q ss_pred HHHHHHHHHHHHHhh
Q 000098 1515 VQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1515 VR~aA~~aL~~l~~~ 1529 (2256)
||.++..+++.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988764
No 181
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.26 E-value=1.7 Score=50.29 Aligned_cols=156 Identities=17% Similarity=0.255 Sum_probs=93.0
Q ss_pred HHhHHhh-cCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH-----hCCCCHHHHHH
Q 000098 1325 SPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-----ADRNSAKRREG 1398 (2256)
Q Consensus 1325 ~~lv~~~-~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l-----~~~~~~~~Re~ 1398 (2256)
.+++++. .....-++++....|.++.+...|.+|..+|. ...|.. .++|+..+.+ ++-+|-..--.
T Consensus 184 KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr---~dsGlh-----QLvPYFi~f~~eqit~Nl~nl~~LtT 255 (450)
T COG5095 184 KPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLR---NDSGLH-----QLVPYFIHFFNEQITKNLKNLEKLTT 255 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccHH-----HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3444433 34566777888888877766778887776664 222221 3334333322 22223333333
Q ss_pred HHHHHHHHHHHhccCchHhHHHHHHHHHHHc-----C-CCcH----HHHHHHHHHHHHHHhhhhHhh--H-HhHHHHHHH
Q 000098 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-----S-DQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLK 1465 (2256)
Q Consensus 1399 al~al~~L~~~l~~~~~pyv~~llp~ll~~l-----~-D~~~----~VR~aa~~al~~l~~~l~~~~--v-~~ilp~Ll~ 1465 (2256)
.++.+..+.....-.++||+.+++|.++.|+ + ++++ .+|+-|+..++.++++++... . +.+...+++
T Consensus 256 v~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllK 335 (450)
T COG5095 256 VVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLK 335 (450)
T ss_pred HHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHH
Confidence 4444444444434456899999999998875 2 2322 489999999999988887532 2 344555555
Q ss_pred hcc--CCChhHHHHHHHHHHHHHhh
Q 000098 1466 GLE--DKAWRTKQSSVQLLGAMAYC 1488 (2256)
Q Consensus 1466 ~L~--~~~w~~R~~a~~~Lg~la~~ 1488 (2256)
..- .....+..+|+.++..+...
T Consensus 336 afLD~~k~~sT~YGalkgls~l~ke 360 (450)
T COG5095 336 AFLDREKTESTQYGALKGLSILSKE 360 (450)
T ss_pred HHHhcccccchhhhhhhhhhhhchh
Confidence 443 34566788888888766554
No 182
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.13 E-value=0.81 Score=50.46 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=88.4
Q ss_pred hhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhh-hCCCChhHHHHHHHHHhcccccCCChh
Q 000098 1496 CLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMG-LTDPNDHTKYSLDILLQTTFVNTVDAP 1572 (2256)
Q Consensus 1496 ~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~-l~d~~~~vr~al~~L~~~~~~~~~~~~ 1572 (2256)
.+|++++.+.+.++ +.++.+|.++.+.||.+|.. +|+. +.+....-.. ..+.+...... .+.........++-
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSIQKSLDSKSSENSNDESTDI--SLPMMGISPSSEEY 82 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcccccCCccccccccccchhh--HHhhccCCCchHHH
Confidence 35788888888885 55699999999999999854 3432 1111000000 00001111100 00000111112223
Q ss_pred hHhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1573 SLALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~-~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
.....+..+.+.++|++- .-...+.+++.++.+..+. + ..+|+++++|.+...+.......|+....-++.++.-
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~-~-cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL-K-CVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc-C-chhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344566677778887653 3344566777777764333 3 3899999999999999987779999888888887753
No 183
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=36 Score=44.55 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=92.0
Q ss_pred HHHHHcCCCCHHHHHHHHHhhHHhHHhhcCch-----HHHHH---HHHHHHhcCCCHHHHHHHHHHHHHHHhhh----Cc
Q 000098 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVS---RLLDQLMKSDKYGERRGAAFGLAGVVKGF----GI 1371 (2256)
Q Consensus 1304 ~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~~l~---~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~----g~ 1371 (2256)
.++.+|..++..||..++..+..+.+..+++. ..+++ ..+..|..++-+++|..|..++..+...+ ++
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 35567777777888777666555555444332 22222 23455667777899999988887776543 22
Q ss_pred ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000098 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2256)
Q Consensus 1372 ~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l 1447 (2256)
..+. +++..+..-+..+....+|-....++..+..... --+.+.+++|.+-..+.|.+..||-++.+.+-.+
T Consensus 258 ~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 258 TILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 2222 4555555555555556788777777776665432 2566788899888889999999999988777655
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.95 E-value=0.97 Score=60.51 Aligned_cols=151 Identities=20% Similarity=0.292 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH-HHHHHhcC---CCHHHHHHHHHHHHHHHHhhC--c
Q 000098 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN-TLISSLAS---SSSERRQVAGRALGELVRKLG--E 1918 (2256)
Q Consensus 1845 vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~-~L~~~L~~---~~~~~R~~A~~aL~~lv~~~~--~ 1918 (2256)
+++.+...++.+..++|..-+-+|..+....+..-.+++..--. ..+..+.+ -+++.|.+|+-.|+.+++.+. .
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 33444455667777788888888888776555443343332000 00011122 246899999999999998653 3
Q ss_pred c--chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000098 1919 R--VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2256)
Q Consensus 1919 ~--~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~ 1995 (2256)
. ....++......++|+ .+-.||-+|.+||.+-+........-.-..-...+...+.|+.++||.+|..|||++...
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 2 3466777777888874 688999999999988776554333222233455667788999999999999999999875
No 185
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.82 E-value=0.42 Score=47.06 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=66.7
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchH
Q 000098 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193 (2256)
Q Consensus 2114 l~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv 2193 (2256)
+...+..+.|+.+.+|..++..+..+++... ......+.++..++..+.|+|.-|--+|..+|+.++...|.+.++.++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 4556667789999999999999999998655 233356888999999999999999999999999999888877666655
Q ss_pred HH
Q 000098 2194 KV 2195 (2256)
Q Consensus 2194 ~~ 2195 (2256)
..
T Consensus 84 ~~ 85 (92)
T PF10363_consen 84 DE 85 (92)
T ss_pred HH
Confidence 43
No 186
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.79 E-value=0.71 Score=50.94 Aligned_cols=143 Identities=20% Similarity=0.273 Sum_probs=85.5
Q ss_pred hhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh---cHh-
Q 000098 1618 GLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL---GTV- 1692 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~---g~~- 1692 (2256)
|.|++.+..++. +.++.+|..+.+++|.++. +.+..+.. ........ ....-............+. ..+
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~----~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKS----IQKSLDSK-SSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhc----ccccCCcc-ccccccccchhhHHhhccCCCchHHH
Confidence 578888888886 4579999999999998873 32211111 10000000 0000000000111111111 122
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1693 YFEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1693 ~l~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
+..-.+..++..++|+. ..-...++.++.++.+..|....+|+++++|.++..+....+..|+....-+..++.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 23445666777777762 334456777888888888888899999999999999997777888877666665543
No 187
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.78 E-value=13 Score=48.26 Aligned_cols=240 Identities=18% Similarity=0.237 Sum_probs=113.8
Q ss_pred CcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhh----cCCCHHHHHHHHHHHH
Q 000098 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALK----SDNSNVERSGAAQGLS 1683 (2256)
Q Consensus 1611 ~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~----~~~~~~~R~~aa~~L~ 1683 (2256)
.++.|+.+.++..|+..+..+...--+..++|+-.+....++. +...+++.|...+. +..++.--.....+++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 5678888999999988886432222233455555555444443 34455555555443 3334434445556677
Q ss_pred HHHHHhcHh------HH-HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC-CCCHHHHH
Q 000098 1684 EVLAALGTV------YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRD 1755 (2256)
Q Consensus 1684 ~i~~~~g~~------~l-~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~-d~~~~VR~ 1755 (2256)
.+++..... .+ +.++|.+.. +-..--.+|.||.=+++..+++.-. ++-
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~-------------------ILq~dV~EF~PYvfQIla~Lle~~~~~~~----- 153 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQE-------------------ILQQDVQEFIPYVFQILAQLLELRPSSPL----- 153 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHH-------------------HHHTT-TTTHHHHHHHHHHHHHHSS--S------
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----
Confidence 666654322 11 222333322 2222234677887777777766544 111
Q ss_pred HHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHH---HHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHH
Q 000098 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR---QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRA 1832 (2256)
Q Consensus 1756 ~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR---~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~ 1832 (2256)
++.+..++|.+..- .-|.-| -+.+.++..++.+.+..-. ....
T Consensus 154 --------------p~~y~~L~~~Ll~p---~lWe~~gniPalvrLL~a~i~k~~~~i~-----------------~~~~ 199 (435)
T PF03378_consen 154 --------------PDAYKQLFPPLLSP---ALWERRGNIPALVRLLQAYIKKDPSFIV-----------------ANNQ 199 (435)
T ss_dssp ---------------TTTGGGHHHHTSG---GGGGSTTTHHHHHHHHHHHHHHHGGG---------------------S-
T ss_pred --------------cHHHHHHHHHHcCc---chhccCCCcCcHHHHHHHHHHhCchhhc-----------------chhh
Confidence 11233355555422 223321 2333444444433111000 0011
Q ss_pred HHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 000098 1833 IIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASS-SSERRQVAGRALG 1910 (2256)
Q Consensus 1833 l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~-~l~~~l~~Ll~~L~~~L~~~-~~~~R~~A~~aL~ 1910 (2256)
+..++| +...|...+... ..+..++..++.+.|. .+.++++.++..+..++.++ .......-...++
T Consensus 200 l~~iLg------vFQkLi~sk~~D-----~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~ 268 (435)
T PF03378_consen 200 LEPILG------VFQKLIASKAND-----HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLS 268 (435)
T ss_dssp CHHHHH------HHHHHHT-TTCH-----HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHCCCCcc-----hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 122232 222222222211 3356788888888886 68999999999999888743 3333333334444
Q ss_pred HHHHhhCcc
Q 000098 1911 ELVRKLGER 1919 (2256)
Q Consensus 1911 ~lv~~~~~~ 1919 (2256)
-++-+.|.+
T Consensus 269 ~~~~~~g~~ 277 (435)
T PF03378_consen 269 LFAIKYGPD 277 (435)
T ss_dssp HHHHHH-HH
T ss_pred HHHHHcCHH
Confidence 444444443
No 188
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=92.72 E-value=7.9 Score=48.83 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=66.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHH----hhChhhhHhhHhhHHHHH
Q 000098 1895 ASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKSQLLSFMDELIPTI 1970 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~----~~~~~~l~~~l~~li~~l 1970 (2256)
.+.++........+|+..+..++...-+.++..+..++.+..+.+|..-+.++++.+. ........++++.++..+
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 4678888999999999999888777778899999999999988899999999998886 222333445566666666
Q ss_pred HHHhcCCCHH
Q 000098 1971 RTALCDSILE 1980 (2256)
Q Consensus 1971 ~~~L~D~~~~ 1980 (2256)
.+....+.+.
T Consensus 113 ~~~~~~p~~~ 122 (339)
T PF12074_consen 113 KEASANPLQS 122 (339)
T ss_pred HHHHhCCCCc
Confidence 6666666544
No 189
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.59 E-value=46 Score=43.96 Aligned_cols=288 Identities=15% Similarity=0.086 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D 1431 (2256)
-..|..|+..|...++....+... .+.......+..++....|+.++..+..+.+.-+.....--..+...+...-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 456777777777777766554433 455555556666666677777777777776654331111111122222222222
Q ss_pred CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCC---------------------------ChhHHHHHHHHHHH
Q 000098 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQLLGA 1484 (2256)
Q Consensus 1432 ~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~---------------------------~w~~R~~a~~~Lg~ 1484 (2256)
++-..|-.+..+|..=.+.+.. -...+.|.+...+..- +-+.=..-+..+..
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 2333343333333222222211 0122333333222100 00000011222222
Q ss_pred HHhhChhhH-hhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHh--hcCchhHHhHHHHHHhhhCCCC--hhHHHHHH
Q 000098 1485 MAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPN--DHTKYSLD 1558 (2256)
Q Consensus 1485 la~~~p~~l-~~~L~~Ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~--~i~~~~i~~lv~~Ll~~l~d~~--~~vr~al~ 1558 (2256)
+...-...+ ...+..++..++..+.. +.+..-.++...+..+.. .+++..+..++..|.....-.+ +..-.++.
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~ 240 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMR 240 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHH
Confidence 222211111 12334555555555433 233333556666666554 2344456667777766544331 12223444
Q ss_pred HHHhcccccCCChhhHhhHHHHHHHhhc------CCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhh--hhhHHHHHhhc
Q 000098 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLR------ERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIG--LLLPEVKKVLV 1629 (2256)
Q Consensus 1559 ~L~~~~~~~~~~~~~l~~i~p~L~~~L~------d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~--~Ll~~L~~~L~ 1629 (2256)
.|..... -...+-.+...+. .++..+-+.|..+++.+.-..+ .+.+.. ... .+++.+...++
T Consensus 241 nL~~S~~--------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~-~~~~~~l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 241 NLLKSHL--------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG-EQGYPSLPFSPSSVLPSLLNALK 311 (464)
T ss_pred HHHcCcc--------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc-cCCcceecccHHHHHHHHHHHHh
Confidence 4443111 1123344444442 2345566677777777664221 122111 122 38999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HhhC
Q 000098 1630 DPIPEVRSVAARAIGSLI-RGMG 1651 (2256)
Q Consensus 1630 d~~~~VR~~a~~aL~~L~-~~~g 1651 (2256)
.+++.|-......+..+. ..++
T Consensus 312 ~~~~~v~~eIl~~i~~ll~~~~~ 334 (464)
T PF11864_consen 312 SNSPRVDYEILLLINRLLDGKYG 334 (464)
T ss_pred CCCCeehHHHHHHHHHHHhHhhh
Confidence 777777666666666666 4443
No 190
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.51 E-value=28 Score=44.62 Aligned_cols=261 Identities=17% Similarity=0.138 Sum_probs=136.1
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhcCch--hH-H
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP--EI-A 1536 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l-~~~L~~Ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~--~i-~ 1536 (2256)
.++..+..++|.+...++.++..++...+... ...++.+++-+...+..+ +...+..|..++..+...-.-. .. .
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 34446667899999999999998886654321 123334555555566533 3566667778888776532111 11 2
Q ss_pred hHHHHHHhhhCCCChhHHHHHHHHHh---cccccCCC-hhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCC-
Q 000098 1537 SLVPTLLMGLTDPNDHTKYSLDILLQ---TTFVNTVD-APSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEP- 1610 (2256)
Q Consensus 1537 ~lv~~Ll~~l~d~~~~vr~al~~L~~---~~~~~~~~-~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~- 1610 (2256)
..++.|...+......++--++.+.. .+|..... .-.-..++|.+...++.. ...+-+.+..++.|+...-.+.
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Confidence 24455555554322122211222211 23432211 011135777777777653 3455666777888887631110
Q ss_pred -C-cc-hhhhh-hhhHHHHHhhcC---CCHHHHHHHHHHHHHHHHh---------------hC----------cCc----
Q 000098 1611 -K-DM-IPYIG-LLLPEVKKVLVD---PIPEVRSVAARAIGSLIRG---------------MG----------EEN---- 1654 (2256)
Q Consensus 1611 -~-~l-~~~l~-~Ll~~L~~~L~d---~~~~VR~~a~~aL~~L~~~---------------~g----------~~~---- 1654 (2256)
. .. ...++ .+++ +.+.+.. .++++.+.....-..+-+. .| +.|
T Consensus 265 ~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN 343 (429)
T cd00256 265 VKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWREN 343 (429)
T ss_pred hhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHH
Confidence 0 01 11112 2222 3333332 2334333221111111110 01 011
Q ss_pred ---h----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh--cHhHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHh
Q 000098 1655 ---F----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEH--ILPDIIRNCSHQRASVRDGYLTLFKYL 1723 (2256)
Q Consensus 1655 ---~----~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~--g~~~l~~--ll~~ll~~l~~~~~~vR~~al~~l~~L 1723 (2256)
| -+++..|.+.|....++....-|+.-+|++++.. |+..+.. .=..+++.++++++.||..|+.++..+
T Consensus 344 ~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 344 ADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1377788888865455555666778899999886 4443322 334578888999999999999988755
No 191
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.33 E-value=2.2 Score=54.16 Aligned_cols=76 Identities=26% Similarity=0.303 Sum_probs=55.1
Q ss_pred CcchhhhhhhhHHHHHhhc----------CCCHHHHHHHHHHHHHHHHhhCcCchH---HHHHHHHHHhhcC-CCHHHHH
Q 000098 1611 KDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSD-NSNVERS 1676 (2256)
Q Consensus 1611 ~~l~~~l~~Ll~~L~~~L~----------d~~~~VR~~a~~aL~~L~~~~g~~~~~---~lip~Ll~~L~~~-~~~~~R~ 1676 (2256)
-.+.||+..+||.++.++. |.+|.+|.-|++.+..++..++..|.. .+...+.+.+.+. ......-
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 4678999999999998864 678999999999999999998876432 3444444444443 4455566
Q ss_pred HHHHHHHHHH
Q 000098 1677 GAAQGLSEVL 1686 (2256)
Q Consensus 1677 ~aa~~L~~i~ 1686 (2256)
|+..+|.++.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 6666666543
No 192
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.30 E-value=3.3 Score=54.38 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=112.1
Q ss_pred HHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC-CcHHHH
Q 000098 1359 AFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD-QVVAVR 1437 (2256)
Q Consensus 1359 a~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D-~~~~VR 1437 (2256)
..+|..++..+....+ .+.++|.+.+.+.+.+- --..+-.+-.|+++.. -..|...++|.+...++- ....++
T Consensus 294 lk~Ls~~ip~fp~rv~-~~kiLP~L~~el~n~~~---vp~~LP~v~~i~~~~s--~~~~~~~~~p~l~pi~~~~~~~~~~ 367 (700)
T KOG2137|consen 294 LKGLSKLIPTFPARVL-FQKILPTLVAELVNTKM---VPIVLPLVLLIAEGLS--QNEFGPKMLPALKPIYSASDPKQAL 367 (700)
T ss_pred HHHHHHhhccCCHHHH-HHhhhhHHHHHhccccc---cccccchhhhhhhccc--hhhhhhhhhHHHHHHhccCCcccch
Confidence 3445444444432222 34566666555533210 0011112223333333 244556667777666552 223344
Q ss_pred HHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh-hcCCCHHH
Q 000098 1438 EAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-LTDTHPKV 1515 (2256)
Q Consensus 1438 ~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~-L~D~~~~V 1515 (2256)
-.-.+-++.+.++++++.+ .+++|.+...+++.+-+....++..+..+++..+-.... ..|+|.+.++ +..+...|
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~v 445 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYV 445 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHH
Confidence 4445666777888888776 789999999999999999999999999999887654433 3688888776 45678899
Q ss_pred HHHHHHHHHHHHhhcCchhHHhHHHHHHhhhC
Q 000098 1516 QSAGQTALQQVGSVIKNPEIASLVPTLLMGLT 1547 (2256)
Q Consensus 1516 R~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~ 1547 (2256)
+..+.-|++.+.+.+....+-+.+..+++++.
T Consensus 446 kvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~ 477 (700)
T KOG2137|consen 446 KVNVLPCLAGLIQRLDKAAVLDELLPILKCIK 477 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 99999999999977655444333344444443
No 193
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=80 Score=45.66 Aligned_cols=93 Identities=20% Similarity=0.127 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhh-CccchhchHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCH
Q 000098 1902 RQVAGRALGELVRKL-GERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2256)
Q Consensus 1902 R~~A~~aL~~lv~~~-~~~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~ 1979 (2256)
...+..|.+...... |....++++..+..... +....+|..+..-+...+-...--......+.+-..+...+.|.+-
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i 1583 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQI 1583 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHH
Confidence 444444554444333 33456777776664333 3357788887766554442211111233446777788888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000098 1980 EVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1980 ~VR~~A~~al~~l~~ 1994 (2256)
+||+.|+.++..+..
T Consensus 1584 ~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1584 EVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988876
No 194
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.03 E-value=45 Score=42.60 Aligned_cols=235 Identities=13% Similarity=0.102 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHhc--cCc-hHhHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHHhhhhHhh-----HHhHHHH
Q 000098 1393 AKRREGALLAFECLCEKLG--RLF-EPYVIQMLPLLLVAFSDQV--VAVREAAECAARAMMSQLSAQG-----VKLVLPS 1462 (2256)
Q Consensus 1393 ~~~Re~al~al~~L~~~l~--~~~-~pyv~~llp~ll~~l~D~~--~~VR~aa~~al~~l~~~l~~~~-----v~~ilp~ 1462 (2256)
.+.-..|+.+++.+.-... ..+ ..+...++...+..+.+++ -.+.....+++.. .++++.- +..++.
T Consensus 60 ~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~- 136 (372)
T PF12231_consen 60 SRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLA- 136 (372)
T ss_pred hHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHH-
Confidence 3444556666665543211 111 1222235556666665543 2343344444332 2233321 222222
Q ss_pred HHHhccC--CChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hHHhHH
Q 000098 1463 LLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLV 1539 (2256)
Q Consensus 1463 Ll~~L~~--~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i~~lv 1539 (2256)
.+..+.+ +.-.+-...+.++..+....|+.+..+...-+|.++..+-+....+|..|...+..+...++.. .+...+
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 2223332 2333445567778888888899998888888888988888889999999877777766655532 222222
Q ss_pred HHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC-Ccchhhhh
Q 000098 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIG 1618 (2256)
Q Consensus 1540 ~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~-~~l~~~l~ 1618 (2256)
...++....+. .....+.+.+..++.++. .-..+.++.+.+..+++.+ -+--+++.
T Consensus 217 ~~~~~~~~~~~---------------------~~~~~~~~~L~~mi~~~~--~~~~a~~iW~~~i~LL~~~~~~~w~~~n 273 (372)
T PF12231_consen 217 LEDLQRSLENG---------------------KLIQLYCERLKEMIKSKD--EYKLAMQIWSVVILLLGSSRLDSWEHLN 273 (372)
T ss_pred HHHhccccccc---------------------cHHHHHHHHHHHHHhCcC--CcchHHHHHHHHHHHhCCchhhccHhHh
Confidence 22222111111 122334444555554421 1123444555555544443 33456788
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC
Q 000098 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1619 ~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
..+.....+++++++.+|..|..|...++.....+
T Consensus 274 ~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 274 EWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 88888899999999999999999999999866543
No 195
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.01 E-value=14 Score=50.44 Aligned_cols=194 Identities=16% Similarity=0.112 Sum_probs=102.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH----
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---- 1453 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---- 1453 (2256)
.-+.++.+.+..++-. ..+ +..++..+......--..++..+.+.+-.....+.+.+|..|.-+++.+....-.
T Consensus 357 ~a~~~i~~~i~~~~~~-~~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~ 434 (574)
T smart00638 357 PALKFIKQWIKNKKIT-PLE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPS 434 (574)
T ss_pred HHHHHHHHHHHcCCCC-HHH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666654321 111 2233333333332212344444444443333335778999999888888763221
Q ss_pred ---hhHHhHHHHHHHhcc----CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc---CCCHHHHHHHHHHH
Q 000098 1454 ---QGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTAL 1523 (2256)
Q Consensus 1454 ---~~v~~ilp~Ll~~L~----~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~---D~~~~VR~aA~~aL 1523 (2256)
..+..+++.+.+.+. +.+-..+...+.+||.+.. +..++.+...+. +..+.+|.+|.+||
T Consensus 435 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 435 CPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred CChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 112456666655543 3455567778899987654 344444444443 34578999999999
Q ss_pred HHHHhhcCchhHHhHHHHHHhhhCCCC--hhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000098 1524 QQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2256)
Q Consensus 1524 ~~l~~~i~~~~i~~lv~~Ll~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~ 1594 (2256)
..++...+. .+.+.++....|+. ..+| .|+..+..+ .|+...+-.+....-.+++..|+.
T Consensus 505 r~~a~~~p~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 505 RNLAKRDPR----KVQEVLLPIYLNRAEPPEVRMAAVLVLMET-------KPSVALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHhCch----HHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhcCcHHHHH
Confidence 988765432 23334444445543 3456 355555431 133333333333333455555543
No 196
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.75 E-value=4.8 Score=53.04 Aligned_cols=168 Identities=13% Similarity=0.149 Sum_probs=110.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-
Q 000098 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2256)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~- 1654 (2256)
.++|.+...++-. .-+.....++.++--+... -.-....+.++|.|...++|.+..+++.+...++.+++.+...+
T Consensus 349 ~~~p~l~pi~~~~--~~~~~~l~i~e~mdlL~~K-t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v 425 (700)
T KOG2137|consen 349 KMLPALKPIYSAS--DPKQALLFILENMDLLKEK-TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV 425 (700)
T ss_pred hhhHHHHHHhccC--CcccchhhHHhhHHHHHhh-CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH
Confidence 4556665555431 1122233355555322111 11234567899999999999999999999999999999776332
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh--hHH
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQ 1732 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~--~f~ 1732 (2256)
-..++|.+.+.........++..++.+++.+++.+.....-+.+..+.+..+..++.+..+....+..++..... ++
T Consensus 426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev- 504 (700)
T KOG2137|consen 426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV- 504 (700)
T ss_pred HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee-
Confidence 345888887776556677789999999999998887765555555566677777888888877777665543322 22
Q ss_pred HHHHHHHHHHHHhcCC
Q 000098 1733 NYLQQVLPAILDGLAD 1748 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d 1748 (2256)
..+.++|.+......
T Consensus 505 -~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 505 -MAENVLPLLIPLSVA 519 (700)
T ss_pred -ehhhhhhhhhhhhhc
Confidence 334566666655443
No 197
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.68 E-value=3.1 Score=46.33 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=98.3
Q ss_pred cHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch----hcHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHHHhc--
Q 000098 2071 HLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQ-ASIRRSSAYLIGYFYKNS-- 2143 (2256)
Q Consensus 2071 ~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~~~~-~~vR~~A~~~l~~l~~~~-- 2143 (2256)
.++.....+.+.+++++..-|..+...+..++...+. .+-...+..++..++..+ +.++..++.++..++...
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566666777788898889999999999999887633 344667778888887655 778999999999998753
Q ss_pred -----hhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHh
Q 000098 2144 -----KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2144 -----~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
.....|.++.++..+++.+++ ..+...+..+|..++++.|.- +.++...++..+.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt-~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT-FRPFANKIESALL 161 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc-ccchHHHHHHHHH
Confidence 234678899999999999987 678889999999999887754 5555555554443
No 198
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=5.2 Score=57.32 Aligned_cols=259 Identities=18% Similarity=0.193 Sum_probs=141.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccc----hhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH
Q 000098 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2256)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~----l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l 1963 (2256)
..+++.+...++..+..|...|++++.....+. ++.....+.+...|.+..+|...-..+..++..++. .+.||+
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk-~lsp~L 122 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK-KLSPFL 122 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence 344455567788999999999999998665443 333334445666788999999988888888877764 478999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhh
Q 000098 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043 (2256)
Q Consensus 1964 ~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~ 2043 (2256)
+.++|.......|.+..|-.+|..+|..... ++ -.|.++..-. ..+++.+-..
T Consensus 123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~e----k~~~v~~~c~--------------------~~i~~~~~~~ 175 (1312)
T KOG0803|consen 123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFA---EE----KDRHVWFKCD--------------------PEIFYLVTEI 175 (1312)
T ss_pred HhhhhhhhheecccchHHHHHHHHHHHhhcC---hh----hhHHHHHHhh--------------------HHHHHHHHHH
Confidence 9999999999999998887766555443221 11 1111111000 0000000000
Q ss_pred hh-cCchhhhHHHHHHHHH-HHhCCCccccHhhHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhh
Q 000098 2044 LV-HLPLSAFNAHALGALA-EVAGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2256)
Q Consensus 2044 L~-~~p~~~~~~~aL~~La-~~~g~~l~~~l~~Ilp~Ll~~l~-~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~ 2120 (2256)
+. ..|. ....+.+++ +-+.....+.....+-.+...+. ..+.+.......+...+.. -+.+-..
T Consensus 176 ~~~~~~~---slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s----------~~~fWk~ 242 (1312)
T KOG0803|consen 176 LVKETPD---SLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLS----------SEKFWKL 242 (1312)
T ss_pred HhccCcc---ccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhh----------HHHHHHH
Confidence 00 0000 000000000 00011111112222222222221 1111112211122222222 2345666
Q ss_pred cCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCC
Q 000098 2121 VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2256)
Q Consensus 2121 l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e 2187 (2256)
+++..+.+|.+..+.+..+++....-+.++-...+.+.....-|+...|.-..|+++.-+...+|.+
T Consensus 243 ~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d~~c~~~we~Vl~~~~~~p~~ 309 (1312)
T KOG0803|consen 243 LKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLDHVCSSMWEKVLLNLSSLPDE 309 (1312)
T ss_pred hcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccccccHHHHHHHHHHhhhhhHH
Confidence 7888999999999999999886554445554455555554444444488889999999776666653
No 199
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=6.4 Score=47.94 Aligned_cols=179 Identities=20% Similarity=0.170 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---ch-HHHHHHHH
Q 000098 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLL 1663 (2256)
Q Consensus 1588 ~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~-~~lip~Ll 1663 (2256)
.+.+.|..|.+-+..+++.+....++.+ + ..+..+...+++++..+|+.|++.+|+.+..-+.. .+ ...++.|+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~-~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLIS-L-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhh-c-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3456666666666666654433233322 2 23444444899999999999999999999754321 11 13677888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhcHh--HH---HHHHHHHHHhccC--CCHHHHHHHHHHHHHhHhhhChhHHHHHH
Q 000098 1664 DALKSDNSNVERSGAAQGLSEVLAALGTV--YF---EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2256)
Q Consensus 1664 ~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~l---~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~~f~~yl~ 1736 (2256)
..+..+.+..+|..+..+++.+++..... .+ .+ ...+...+++ .+...+.-++..+..+......+-...-.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 88888777778999999999998876433 11 11 2334445555 45666677777787776554322111112
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhh
Q 000098 1737 QVLPAILD-GLADENESVRDAALGAGHVLVEHYA 1769 (2256)
Q Consensus 1737 ~ilp~Ll~-~L~d~~~~VR~~Al~al~~iv~~~~ 1769 (2256)
..++..+. .....+..+++.+..+.-..+..+.
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 22222222 2223345677777777666555444
No 200
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.40 E-value=52 Score=42.05 Aligned_cols=270 Identities=14% Similarity=0.112 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHHHHHhh------cCchhHHhHHHHHHhhhCCCCh--hH-HHHHHHHHhcccccCCChh-hHhhHHHHH
Q 000098 1512 HPKVQSAGQTALQQVGSV------IKNPEIASLVPTLLMGLTDPND--HT-KYSLDILLQTTFVNTVDAP-SLALLVPIV 1581 (2256)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~~------i~~~~i~~lv~~Ll~~l~d~~~--~v-r~al~~L~~~~~~~~~~~~-~l~~i~p~L 1581 (2256)
+.++-.+|.++++.+... +.+.....++...+..+.+++. .+ +.++..+....|....-.. -...++..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 456666777777766532 2222233466777777777752 22 4566666666665543222 222333333
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHH
Q 000098 1582 HRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2256)
Q Consensus 1582 ~~~L~-d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip 1660 (2256)
...-+ =.+..+-.....++.++.. ..+..+..+.+.-+|.++..+.+....+|..|......+...+|++ ..+..
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~--q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~--~~~s~ 214 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLS--QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN--KELSK 214 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh--HHHHH
Confidence 33222 2344454555566666665 3344455556666777777777888889988777766666666644 12222
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh---HHHHHHH
Q 000098 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ---FQNYLQQ 1737 (2256)
Q Consensus 1661 ~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~---f~~yl~~ 1737 (2256)
.+.+.++...... .+.+.+.+.+...+.+++. -..++..|+.+...+|.. --+|++.
T Consensus 215 ~~~~~~~~~~~~~------------------~~~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~~~~w~~~n~ 274 (372)
T PF12231_consen 215 SVLEDLQRSLENG------------------KLIQLYCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSRLDSWEHLNE 274 (372)
T ss_pred HHHHHhccccccc------------------cHHHHHHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCchhhccHhHhH
Confidence 2222222211110 1122233333333333110 112334444444444432 2368888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc------hhchHHHHHhhcCC-C----CHHHHHHHHHHHHHHHHh
Q 000098 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTS------LPLLLPAVEDGIFN-D----NWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~------~~~llp~L~~~l~d-~----~~~iR~~sv~llg~ll~~ 1805 (2256)
.+...-.++++.++.+|..|..|.+.++....... +..+.-.+...+.. . ...+|...+..++.+++.
T Consensus 275 wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 275 WLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 89999999999999999999999999987544321 12232233322321 1 125566666666666543
No 201
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.18 E-value=41 Score=41.29 Aligned_cols=216 Identities=20% Similarity=0.190 Sum_probs=131.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hhC-cccch-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-cCc
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFG-ISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLF 1414 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~-~~g-~~~~~-~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~-~~~ 1414 (2256)
+...+..+....+|..-.++..-|...++ ... ...+. +..+-..+.+.+...-...+-.-|+..+..+.+.+| +.+
T Consensus 12 v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L 91 (307)
T PF04118_consen 12 VEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGL 91 (307)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 44444444444566665544444444444 111 11111 224566666666655455667778999999998887 334
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p 1490 (2256)
...+.-..|.++..+......||-.-.+-++...-.+++ .+ +.++..++.+++|+.-..-..+..++..+.....
T Consensus 92 ~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 92 AQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 444555567777777777788888877777776656665 33 4555666677787766666667777887777654
Q ss_pred hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---------------chhHHhHHHHHHhhhCCCChhH-H
Q 000098 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHT-K 1554 (2256)
Q Consensus 1491 ~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~---------------~~~i~~lv~~Ll~~l~d~~~~v-r 1554 (2256)
+. .++..+..++- ++|.+|..|..-+.+-..... .++..-++..+..++.|++.-+ |
T Consensus 171 ~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR 243 (307)
T PF04118_consen 171 DK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQR 243 (307)
T ss_pred hh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHH
Confidence 43 22333333333 468899888766654333222 1223457778888999987766 5
Q ss_pred HHHHHHHh
Q 000098 1555 YSLDILLQ 1562 (2256)
Q Consensus 1555 ~al~~L~~ 1562 (2256)
..++.|..
T Consensus 244 ~~LDlLl~ 251 (307)
T PF04118_consen 244 GFLDLLLS 251 (307)
T ss_pred HHHHHHHH
Confidence 68888775
No 202
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=91.17 E-value=62 Score=42.57 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=62.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcc---c-hhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhh-HhhHhhHHHH
Q 000098 1895 ASSSSERRQVAGRALGELVRKLGER---V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPT 1969 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~---~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l-~~~l~~li~~ 1969 (2256)
.+++..+...+..++..++-.++.- + -...+..+...+.++++++|+...+.|.+++-.+....- .++-+.-...
T Consensus 429 ~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~ 508 (678)
T KOG1293|consen 429 MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANL 508 (678)
T ss_pred hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHH
Confidence 3444445555555555555444432 1 245567777788888899999999999988766654322 2333334455
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1970 IRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1970 l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
+.....|++..|++.+...+-.+.
T Consensus 509 i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 509 ILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhh
Confidence 556678999999998766555443
No 203
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.16 E-value=23 Score=48.88 Aligned_cols=134 Identities=24% Similarity=0.214 Sum_probs=83.7
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcc--------------CchHhHHHHHHHHHHHcCCCcHHHHHHH
Q 000098 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGR--------------LFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2256)
Q Consensus 1378 ~il~~L~~~l~~---~~~~~~Re~al~al~~L~~~l~~--------------~~~pyv~~llp~ll~~l~D~~~~VR~aa 1440 (2256)
.++..+...+.. .++...+..++.+++.+....-. ..+.|+..+...+-......+...+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 455555555432 23577889999999999875321 1233445555555555566677778888
Q ss_pred HHHHHHHHhhhhHhhHHhHHHHHHHhccCC---ChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC--CCHHH
Q 000098 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDK---AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD--THPKV 1515 (2256)
Q Consensus 1441 ~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~---~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D--~~~~V 1515 (2256)
..|++.+. ....++.+...+.+. .-..|..|+.+|..++..+|+... +.+++.+.| .+++|
T Consensus 511 LkaLgN~g-------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~-------~~l~~I~~n~~e~~Ev 576 (618)
T PF01347_consen 511 LKALGNLG-------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR-------EILLPIFMNTTEDPEV 576 (618)
T ss_dssp HHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH-------HHHHHHHH-TTS-HHH
T ss_pred HHHhhccC-------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH-------HHHHHHhcCCCCChhH
Confidence 88887763 345677777777654 678999999999988877766543 334444443 46889
Q ss_pred HHHHHHHHHH
Q 000098 1516 QSAGQTALQQ 1525 (2256)
Q Consensus 1516 R~aA~~aL~~ 1525 (2256)
|-+|...|-.
T Consensus 577 RiaA~~~lm~ 586 (618)
T PF01347_consen 577 RIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998866544
No 204
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.50 E-value=24 Score=43.23 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHhhhhHhhH----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1419 IQMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1419 ~~llp~ll~~l~D~-~~~VR~aa~~al~~l~~~l~~~~v----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
..+-..+-+|+.=. ...|...|.+....+.+.++.+.+ .-+.|.++..+...+-.+|..-+..+....-..+..+
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L 132 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL 132 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH
Confidence 34455555565432 457889999999999999988765 4567888888888888899888888887777677788
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhh-CCCChhHH-HHHHHHHh--cccc---
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTK-YSLDILLQ--TTFV--- 1566 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l-~d~~~~vr-~al~~L~~--~~~~--- 1566 (2256)
...++.++..++.++.|+..++...+...+..+...+++.++ ...++.++ ..| ..| .|+.-+.. ..+.
T Consensus 133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F---~~~lwl~ii~sp--~~Rl~al~~l~~~l~~~~~~~ 207 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYF---WQCLWLCIITSP--SRRLGALNYLLRRLPKFQNDE 207 (307)
T ss_pred HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHH---HHHHHHHHhcCc--chhHHHHHHHHHhCCcccccc
Confidence 899999999999999999999999999999999988876633 23333333 333 233 23333222 1111
Q ss_pred --------cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1567 --------NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1567 --------~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
...-.+....++..+..++.|.+.-|++...+.+-.-..
T Consensus 208 ~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 208 LSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred cccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 001123345677888888889888888886666554433
No 205
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.42 E-value=5.7 Score=49.81 Aligned_cols=86 Identities=23% Similarity=0.422 Sum_probs=59.5
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhh
Q 000098 1865 LHVWKTIVANTPKTLKEIMPVLMNTLISSL----------ASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRG 1931 (2256)
Q Consensus 1865 ~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L----------~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~ 1931 (2256)
+.+..++..|..-.+.+|+..+++.++.++ .+.++..|..|+..|+.++++++.. ..+.+...+.+.
T Consensus 238 m~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~ 317 (343)
T cd08050 238 MRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKA 317 (343)
T ss_pred HHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 345556666655455556666665555444 2345899999999999999999876 357777777777
Q ss_pred cCCCC--hhhHHhHHHHHHHH
Q 000098 1932 LKDPS--ASRRQGVCIGLSEV 1950 (2256)
Q Consensus 1932 l~d~~--~~vR~~a~~aL~ei 1950 (2256)
+.|+. .....|+..+|..+
T Consensus 318 l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 318 LLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HcCCCCCcchhhHHHHHHHHh
Confidence 77663 34588988887754
No 206
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=90.36 E-value=0.96 Score=49.65 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=86.1
Q ss_pred cccHhhHHHHHHHhhC------------------CCCHHHHHHHHHHHHHHHhhcch-hcHHHHHHHHHhhcCCCChhhH
Q 000098 2069 NFHLGTILPALLSAMG------------------DDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIR 2129 (2256)
Q Consensus 2069 ~~~l~~Ilp~Ll~~l~------------------~~~~~vr~~a~~al~~l~~~~~~-~~~~~ll~~Ll~~l~~~~~~vR 2129 (2256)
.++++.++|.++.... |+.-++|..|.+|+.+++..+.. -.+..+++.+..+++| +..+|
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk 82 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIK 82 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHH
Confidence 4566777777776542 12358899999999999997633 4478889999999999 99999
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcC----CC--------ChHHHHHHHHHHHHhhccCC
Q 000098 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS----DS--------DSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2130 ~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~----D~--------d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
..+...+..++...+..+...+..++.++-..++ +. ..+..+.+..+...+-..++
T Consensus 83 ~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 83 MLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp HHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999998888888888888888877773 21 23566677777777755554
No 207
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.14 E-value=36 Score=46.50 Aligned_cols=134 Identities=20% Similarity=0.140 Sum_probs=81.2
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhc-cC-------chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000098 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLG-RL-------FEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2256)
Q Consensus 1378 ~il~~L~~~l~~---~~~~~~Re~al~al~~L~~~l~-~~-------~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2256)
.++..+.+.+.+ ..++..|..++.+++.+..... .. ...|+..+...+-.+..+.+...+.....+++.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 566667666654 3356788999999999987432 11 122333333333334444555566666777665
Q ss_pred HHhhhhHhhHHhHHHHHHHhcc---CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc--CCCHHHHHHHHH
Q 000098 1447 MMSQLSAQGVKLVLPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT--DTHPKVQSAGQT 1521 (2256)
Q Consensus 1447 l~~~l~~~~v~~ilp~Ll~~L~---~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~--D~~~~VR~aA~~ 1521 (2256)
+.. ...++.+...+. +...+.|..|+.+|..++..+|+..... +++.+. +.+++||.+|+.
T Consensus 473 ~g~-------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~-------l~~i~~n~~e~~EvRiaA~~ 538 (574)
T smart00638 473 AGH-------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV-------LLPIYLNRAEPPEVRMAAVL 538 (574)
T ss_pred cCC-------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH-------HHHHHcCCCCChHHHHHHHH
Confidence 532 222333333332 3467899999999999998887765433 333443 467899999987
Q ss_pred HHHH
Q 000098 1522 ALQQ 1525 (2256)
Q Consensus 1522 aL~~ 1525 (2256)
.|-.
T Consensus 539 ~lm~ 542 (574)
T smart00638 539 VLME 542 (574)
T ss_pred HHHh
Confidence 7644
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.08 E-value=5.6 Score=53.83 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHhhC--cC--chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHh
Q 000098 1633 PEVRSVAARAIGSLIRGMG--EE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRN 1704 (2256)
Q Consensus 1633 ~~VR~~a~~aL~~L~~~~g--~~--~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~ 1704 (2256)
++-|..|+-.|..++..+. .+ .-..++...+..|.++..+-.|.=.+.+||.+.+.+....+ ...-..++..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 5788888888999988653 22 22356677777777755677888899999999988776643 3455677888
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhhChhHHH----------------HHHHHHH----HHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQN----------------YLQQVLP----AILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1705 l~~~~~~vR~~al~~l~~La~~~g~~f~~----------------yl~~ilp----~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
+.|+.++||.+++.++|.+.....+.|.. -.+..++ .++..++|..+-||....-++..+
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 89999999999999999877764222211 1222233 667777888888888777777766
Q ss_pred HHHhh
Q 000098 1765 VEHYA 1769 (2256)
Q Consensus 1765 v~~~~ 1769 (2256)
+-.|.
T Consensus 731 ~~g~~ 735 (1387)
T KOG1517|consen 731 VVGYV 735 (1387)
T ss_pred HHhhH
Confidence 55443
No 209
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.81 E-value=3.1 Score=42.52 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhHhhhCh-hHHHHHHHHHHHHHHh
Q 000098 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDG 1745 (2256)
Q Consensus 1669 ~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~-~f~~yl~~ilp~Ll~~ 1745 (2256)
..+...|..+..+++.+++ .+.+++..+.|.++..++. ..++.|..++.+|..+...+++ ++.|++++++-.+++.
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4566688888899999998 7777788888888777765 3558999999999988888875 5777877777776665
Q ss_pred c
Q 000098 1746 L 1746 (2256)
Q Consensus 1746 L 1746 (2256)
.
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 4
No 210
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.78 E-value=2.7 Score=46.28 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=77.1
Q ss_pred chHhHHHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHHHhhhhHh-hHHhHHHHHHHhccCCChhH
Q 000098 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2256)
Q Consensus 1414 ~~pyv~~llp~ll~~l~------------------D~~~~VR~aa~~al~~l~~~l~~~-~v~~ilp~Ll~~L~~~~w~~ 1474 (2256)
+.|++..++|.++.... |+.-++|++|.+++..+...+... .+..++..+..++.| +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 45777888888886542 345699999999999998765543 357789999999999 9999
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc
Q 000098 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2256)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~ 1509 (2256)
|..+...+..++..+|..+...++.+++.+...|+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998888774
No 211
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.70 E-value=4.6 Score=44.93 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=95.1
Q ss_pred hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCch----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1616 ~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~----~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
.++.++..+...++++++.-|-.+...++.+++..|.+.+ ...+..++..|++.+....+..+...+..+....+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566788888999999999999999999999988765533 345666677777767777788888888887755432
Q ss_pred h----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc
Q 000098 1692 V----------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2256)
Q Consensus 1692 ~----------~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L 1746 (2256)
. .+..+++.+++.+++ ....+.++.++..+-...+..|.||..++-..+...+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 1 334455555555544 5677888888888888888888888888777666554
No 212
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.42 E-value=3.2 Score=42.46 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.9
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~---~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
.++..+.+.+.+ +++...|..++.+++.+.+..++...++..+++..+...+..+ ++|..|.++...+...++..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 455666666665 6677888899999999999666666666666666666666554 89999999999999999988
Q ss_pred hHHhHHHHHHH
Q 000098 1455 GVKLVLPSLLK 1465 (2256)
Q Consensus 1455 ~v~~ilp~Ll~ 1465 (2256)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 77776665543
No 213
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=89.38 E-value=37 Score=44.03 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=68.5
Q ss_pred HHHHHHHHHhCCCcc--ccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch----hcHHHHHHHHHhhcCCC-Chh
Q 000098 2055 HALGALAEVAGPGLN--FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDN-QAS 2127 (2256)
Q Consensus 2055 ~aL~~La~~~g~~l~--~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~~~-~~~ 2127 (2256)
+.|.+..+..+..+. .++..++..+-+.+.++..+ ..+...+..++.+++. +++..++..++..+++. ...
T Consensus 181 rLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 181 RLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HH
T ss_pred HHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHH
Confidence 344444444444443 57788888887777765422 3477888899988754 57888888888888643 455
Q ss_pred hHHHHHHHHHHHHHhchhh-hhhhH----HHHHHHHH-----HHcCC-CChHHHHHHHHHHHHhhccC
Q 000098 2128 IRRSSAYLIGYFYKNSKLY-LVDEA----PNMISTLI-----VLLSD-SDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2128 vR~~A~~~l~~l~~~~~~~-~~~y~----~~il~~L~-----~~l~D-~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
-+..-+..++.++-..+.+ +...+ +.+...++ ..++. ....=|+.+.-++.+++...
T Consensus 259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 5555555555554433322 11111 11222222 22222 23344777777777776443
No 214
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.36 E-value=9.2 Score=46.71 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=99.5
Q ss_pred CCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc---------hHHHHHHHHHHhh------c-CCCH
Q 000098 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK------S-DNSN 1672 (2256)
Q Consensus 1609 ~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~---------~~~lip~Ll~~L~------~-~~~~ 1672 (2256)
+...+..+++-++|.++.++.|..+.+|..++.++..+...++... .+-+-+.+...+. . +++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 4467788999999999999999999999999999999998765443 2233444444444 1 2233
Q ss_pred HHHHHHHHHHHHHHHHh---cHh----HHHHHH-HHHHHhccCC----CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHH
Q 000098 1673 VERSGAAQGLSEVLAAL---GTV----YFEHIL-PDIIRNCSHQ----RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2256)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~---g~~----~l~~ll-~~ll~~l~~~----~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp 1740 (2256)
..-..+..++-.++... +.. .+..++ ..++..+... .+.++...+..+..+...+|.....|+..++|
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33344445555555432 111 233333 3366655432 48889999999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 000098 1741 AILDGLADEN 1750 (2256)
Q Consensus 1741 ~Ll~~L~d~~ 1750 (2256)
.+.+.+.++.
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999888764
No 215
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.53 E-value=88 Score=40.39 Aligned_cols=213 Identities=17% Similarity=0.158 Sum_probs=133.7
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh-hh--Hh---hHHhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LS--AQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~-l~--~~---~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la 1486 (2256)
.|+..+..++..++.+-+.+...-|- ..-+.++..+ ++ ++ -+..++..++.++++++..+|+-+++.|.-+.
T Consensus 42 ~f~~~flr~vn~IL~~Kk~~si~dRi--l~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 42 EFSEEFLRVVNTILACKKNPSIPDRI--LSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred hhHHHHHHHHHHhhccccCCCcHHHH--HHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 45666667777777766654433332 2334444442 11 12 24678888899999999999999999999988
Q ss_pred hhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhh-CCCChhHHH-HHHHHHhcc
Q 000098 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY-SLDILLQTT 1564 (2256)
Q Consensus 1487 ~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l-~d~~~~vr~-al~~L~~~~ 1564 (2256)
.+..+.-...+..++..+.+.+-|..+.||..|..+|..+-+.-.+++- .+...|...+ .||+..+|. ++-.+.. .
T Consensus 120 d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~~~n~l~~~vqnDPS~EVRr~allni~v-d 197 (885)
T COG5218 120 DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-RIVNLLKDIVQNDPSDEVRRLALLNISV-D 197 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHhcCcHHHHHHHHHHHeee-C
Confidence 8876644445567888888899999999999999999998776555543 2223333333 588888875 4333321 1
Q ss_pred cccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH-HHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAA-QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~-~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
. ...|.+....+|.+...|+... .++..+..... .++.++ + -.+...+.|....|+.++..++
T Consensus 198 n----------sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~--lsi~kr---i-~l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 198 N----------STYPCILERARDVSGANRRMVYERCLPRIGDLKS--LSIDKR---I-LLMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred C----------CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh--ccccce---e-hhhhhcchhhhhhHHHHHHHHH
Confidence 1 1236666666676665555432 23333322100 112222 1 2556678888899998888877
Q ss_pred HH
Q 000098 1644 GS 1645 (2256)
Q Consensus 1644 ~~ 1645 (2256)
..
T Consensus 262 a~ 263 (885)
T COG5218 262 AS 263 (885)
T ss_pred HH
Confidence 54
No 216
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=7.3 Score=47.49 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH----HhHHHHHHHh
Q 000098 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKG 1466 (2256)
Q Consensus 1391 ~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v----~~ilp~Ll~~ 1466 (2256)
.+...++.++.-+..+++.++..-.=.-...++.++..+++.+..+|..|++.++.++++-+.... ...++.++..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 367889999998888888776311111112344555589999999999999999999998876442 3478888888
Q ss_pred cc-CCChhHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHh
Q 000098 1467 LE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD--THPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1467 L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L--~~Ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~ 1528 (2256)
+. ++.-.+|..|+.+++.+....+.....++ +. ...|..++++ .+...+..+..-+..+..
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 87 45566778899999999987765443332 23 4456777776 445555556655555543
No 217
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=1.3e+02 Score=41.60 Aligned_cols=98 Identities=16% Similarity=0.107 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCc---c---chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHh
Q 000098 1880 KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE---R---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1880 ~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~---~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~ 1953 (2256)
-.++..++...+..+.+.+-.+|..+..+|......+.. . .....+|.+.+.+.+.+|-+.+.++.++..+...
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 345555566666677777778888888877655443321 1 1244566667777788888889999999888887
Q ss_pred hChhhhHhhHhhHHHHHHHHhcCC
Q 000098 1954 AGKSQLLSFMDELIPTIRTALCDS 1977 (2256)
Q Consensus 1954 ~~~~~l~~~l~~li~~l~~~L~D~ 1977 (2256)
+|.=....++..++|.+...+.|.
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 775444556677888887665543
No 218
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.14 E-value=2.7e+02 Score=44.41 Aligned_cols=701 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-----------hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----------QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-----------~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
+++.+..+++..+..++..+..++..+...... .-+..+++.++....+..|..|.+++..|+.+.+..
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Q ss_pred hhh-HhhhhhhHHHHHHHhhcCCCHHHHH----HHHHHHHHHHhhcCc---------hhHHhHHHHHHhhhCCCChhHHH
Q 000098 1490 PQQ-LSQCLPKIVPKLTEVLTDTHPKVQS----AGQTALQQVGSVIKN---------PEIASLVPTLLMGLTDPNDHTKY 1555 (2256)
Q Consensus 1490 p~~-l~~~L~~Ivp~L~~~L~D~~~~VR~----aA~~aL~~l~~~i~~---------~~i~~lv~~Ll~~l~d~~~~vr~ 1555 (2256)
|.. +-...-.++..+...+.|...++-. .+-..+..+...+.+ .....++..+..-+.+|+..+|+
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~ 1144 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVRE 1144 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHH
Q ss_pred HHHHHHh------cccccCCChhhHhhH-HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh
Q 000098 1556 SLDILLQ------TTFVNTVDAPSLALL-VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2256)
Q Consensus 1556 al~~L~~------~~~~~~~~~~~l~~i-~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L 1628 (2256)
....+.. ..-+...-.|....+ .|.+..-++...-.......+.+......-.++-++..-+-.+...+..++
T Consensus 1145 ~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La 1224 (3550)
T KOG0889|consen 1145 FSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALA 1224 (3550)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhh
Q ss_pred cCCCHH------------------HHHHHHHHHHHHHHhhCcC------chHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1629 VDPIPE------------------VRSVAARAIGSLIRGMGEE------NFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2256)
Q Consensus 1629 ~d~~~~------------------VR~~a~~aL~~L~~~~g~~------~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~ 1684 (2256)
.+..++ .|..+.+.++.......-. +.+.++..++..+.. ...+...++..++..
T Consensus 1225 ~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~-~~~Ei~~~~~~~l~~ 1303 (3550)
T KOG0889|consen 1225 DAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYK-RSSELIEVALEGLRK 1303 (3550)
T ss_pred hhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Q ss_pred HHHH---hcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000098 1685 VLAA---LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ-NYLQQVLPAILDGLADENESVRDAALGA 1760 (2256)
Q Consensus 1685 i~~~---~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~-~yl~~ilp~Ll~~L~d~~~~VR~~Al~a 1760 (2256)
+... ++++.++..+..++.++.|... .-...+..++.+...+..-|. .+-..++..+...+.+..-+.-..+.++
T Consensus 1304 v~~~~~~~~ke~lq~~lrplL~~l~d~~~-lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~~~~y~~~~l~~ 1382 (3550)
T KOG0889|consen 1304 VLAQDVKLPKELLQSHLRPLLMNLSDHNN-LSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWLEDEVLDYLSGALKA 1382 (3550)
T ss_pred hhhccccccHHHHHhhHHHHHHhhhHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHhhhhcc
Q ss_pred HHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcch
Q 000098 1761 GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840 (2256)
Q Consensus 1761 l~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e 1840 (2256)
....-.......+-.++|.. +...+.+++.+ .......+-...+..
T Consensus 1383 ~~~~~i~~~~i~~f~~lp~~--------------~~~~~~~Ll~~--------------------v~~~e~~L~~~~~sp 1428 (3550)
T KOG0889|consen 1383 GPEMKIIVVIINLFHLLPPA--------------ADKFLDELLLC--------------------VVLLEEVLRKEENSP 1428 (3550)
T ss_pred CccchhhhHHHHHHHhccHH--------------HHHHHHHHHHH--------------------HHHHHHHHHHhcCCh
Q ss_pred hhHHHHHHHHHHhcCCcHHHHHH------HHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000098 1841 KRNEVLAALYMVRSDVSLSVRQA------ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS--SSERRQVAGRALGEL 1912 (2256)
Q Consensus 1841 ~~~~vl~~L~~~~~D~~~~Vr~a------A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~--~~~~R~~A~~aL~~l 1912 (2256)
++..+...+-+..+++....-+. +......+-......+++-+..-.......+..+ .+..+..+.......
T Consensus 1429 ~r~pl~kfl~r~~~~tv~~f~~~~~~~~~~~~f~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1508 (3550)
T KOG0889|consen 1429 FREPLLKFLNRFANPTVDYFLAQLDEPDLYRMFVYALRIDDLLPLREVLAKEWLEFYTLLDPEISSYTVPNMASDIQFQM 1508 (3550)
T ss_pred hhhHHHHHHHHccCchHHHHHHHcchHHHHHHHHHHHcccchhHHHHHHhhhHHHHHHhccCccCccccchhhcchhhhh
Q ss_pred HHhhCc---------cchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH-------hhHHHHHHHHhcC
Q 000098 1913 VRKLGE---------RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-------DELIPTIRTALCD 1976 (2256)
Q Consensus 1913 v~~~~~---------~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l-------~~li~~l~~~L~D 1976 (2256)
+..... .-...+++.+...+..+.-..|...+..+..-.. ...+..|. +-+...+.....+
T Consensus 1509 v~~i~~~vk~~~e~~~s~~~iv~~l~~v~~~~~~~~~~~~~~~l~~~~~---~~~lL~~~~~~~~~~~l~~~il~~~~~~ 1585 (3550)
T KOG0889|consen 1509 VPLISTMVKNDDEWLLSSQFIVLALRRIWKLESILERLFLEDRLCLNSI---VKCLLEYLSLNKYDLELLLQILSFFEGN 1585 (3550)
T ss_pred hHHHHHHHhccHHHhhccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccHHHHHHHHHHHhcc
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHH-HHHHHhhhcccchhhhhhhhhcCchhhhHHH
Q 000098 1977 SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDG-LKQILSVRTTAVLPHILPKLVHLPLSAFNAH 2055 (2256)
Q Consensus 1977 ~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~-L~~il~~~~~~~lp~li~~L~~~p~~~~~~~ 2055 (2256)
...+.-.---.-...+.+..........+-..++...+...+.....- ++.+ +.|.+...+-+.....
T Consensus 1586 ~~~d~~~l~~~l~~~vi~~~~~~~kr~~f~~~l~~f~~~~~~~~~~~~~l~~l-----------i~p~l~~~~~kge~~~ 1654 (3550)
T KOG0889|consen 1586 DNIDLTFLKEFLEHEVIKSYSYNMKRNLFLVFLNLFGDKDLGADHKAQVLQGL-----------INPCLNYSFEKGETNE 1654 (3550)
T ss_pred CCccHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCcccchhHHHHHHHHh-----------hhHHHhhccccccccc
Q ss_pred HHHHHHHHhCCCccccHhhHHHHHHHhhCCC----CHHHHHHHHHHHHHHHhhcch---hcHHHHHHHHHhhcCCCChhh
Q 000098 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDD----DMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASI 2128 (2256)
Q Consensus 2056 aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~----~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~~~~~~v 2128 (2256)
.++ ..-...+.+.+...-.++ ++..|-.+......+++...+ +....+|...-.++..+|+..
T Consensus 1655 i~~----------~d~~~~~~~~~~~~~~~~~~~~dd~~~i~~lqL~t~~ik~ase~i~d~~~~li~f~w~cl~~eD~~~ 1724 (3550)
T KOG0889|consen 1655 ILG----------PDIVKKIDEVFVNKPLDPSYAYDDGLRIELLQLATLLIKYASEHIHDQRKSLIKFAWNCLKSEDPMI 1724 (3550)
T ss_pred ccC----------CccchhhhhhhccCCCchhhhccchHHHHHHHHHHHHHhccHHHHHHhhHHHHHHHHhhhcccchHH
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCC
Q 000098 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2129 R~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
|+.+...+..+.+ .+.....-+......++..-.+++|.-+..+|.-++..++
T Consensus 1725 k~~~~~~i~~fI~----~~~~~~kiV~qvf~~LlkT~~~E~R~~vk~aLdil~p~l~ 1777 (3550)
T KOG0889|consen 1725 KQSAYLVIAHFIE----RFQIPPKIVLQVFVALLKTYQPEARAIVKQALDILTPALP 1777 (3550)
T ss_pred HHHHHHHHHHHHH----HhccChhHhHHHHHHHhhcccHHHHHHHHHHHHHhchhhh
No 219
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=86.62 E-value=5.8 Score=40.35 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=63.8
Q ss_pred cHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~---~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
.++..+.+.+.|.+ +...|..++.+++.+.+..|.....+..++...+...+. .++.|..|..+...+...++..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 45555555555543 667788899999999998777677777777777777776 4569999999999999999887
Q ss_pred hHHhHHHHHH
Q 000098 1455 GVKLVLPSLL 1464 (2256)
Q Consensus 1455 ~v~~ilp~Ll 1464 (2256)
.+..++...+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T smart00802 89 ELGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7766655544
No 220
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.31 E-value=7.2 Score=47.62 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=90.7
Q ss_pred cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh---H------HhHHHHHHHhcc--------CCChhH
Q 000098 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V------KLVLPSLLKGLE--------DKAWRT 1474 (2256)
Q Consensus 1412 ~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~---v------~~ilp~Ll~~L~--------~~~w~~ 1474 (2256)
..++.+..-++|.++..+.|.++.+|..+..++..+..+.+... + +.+.+.+...+- +++...
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 45778888999999999999999999999999999998776554 2 233334444443 344454
Q ss_pred HHHHHHHHHHHHhhC---hhh-HhhhhhhHH-HHHHHhh----cCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHH
Q 000098 1475 KQSSVQLLGAMAYCA---PQQ-LSQCLPKIV-PKLTEVL----TDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTL 1542 (2256)
Q Consensus 1475 R~~a~~~Lg~la~~~---p~~-l~~~L~~Iv-p~L~~~L----~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~L 1542 (2256)
=..+..++-.++... +.. -...+..++ ..++..+ +-++++++...++.+..+.+.++-. +++.+++.+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555554431 111 111222222 2133332 2236888999999998888887643 568888888
Q ss_pred HhhhCCCC
Q 000098 1543 LMGLTDPN 1550 (2256)
Q Consensus 1543 l~~l~d~~ 1550 (2256)
...+.+|.
T Consensus 271 ~~~l~npf 278 (282)
T PF10521_consen 271 SQILENPF 278 (282)
T ss_pred HHHhcCCC
Confidence 88888774
No 221
>PF05536 Neurochondrin: Neurochondrin
Probab=86.15 E-value=1.4e+02 Score=40.17 Aligned_cols=230 Identities=18% Similarity=0.164 Sum_probs=121.5
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH---hhhhh----hHHHHHHHhhc---C-CCHHHHHHHHHHHHHHHh
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLP----KIVPKLTEVLT---D-THPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l---~~~L~----~Ivp~L~~~L~---D-~~~~VR~aA~~aL~~l~~ 1528 (2256)
+...+..|...+-..|.+++.++..+....+..- ...+. .++..|+..-. + +....+.-|..-|..|+.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 3444455555555666666666666665433210 01111 22222222211 1 224456677777777775
Q ss_pred h---cCchhHHhHHHHHHhhhCCCCh-h-HHHHHHHHHhcccccCCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1529 V---IKNPEIASLVPTLLMGLTDPND-H-TKYSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2256)
Q Consensus 1529 ~---i~~~~i~~lv~~Ll~~l~d~~~-~-vr~al~~L~~~~~~~~~~~~~l--~~i~p~L~~~L~d~~~~vR~~a~~~l~ 1601 (2256)
. ...+.+-.-+|.|++.+...+. . +.+|++.|.... .+..+...+ ...+|.+.+.+.+ .+.....+..++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 2 1134566788999999977765 3 346776665522 111111111 1223444444433 3455666777777
Q ss_pred HHhhhcCCCCc---chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC---------cCchHHHHHHHHHHhhcC
Q 000098 1602 NMCSLVTEPKD---MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG---------EENFPDLVSWLLDALKSD 1669 (2256)
Q Consensus 1602 ~L~~~l~~~~~---l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g---------~~~~~~lip~Ll~~L~~~ 1669 (2256)
+++...+ .+. -...+..+++.+...+.......+-..+.-++.+....+ +.....+...+.+.+++.
T Consensus 165 ~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 7766432 111 122333455555555555555555566666666655442 113455667777777776
Q ss_pred CCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1670 NSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
.....|..+....+.++..+|.+
T Consensus 244 ~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred CCHHHHHHHHHHHHHHHHHhChH
Confidence 66667777777677777777665
No 222
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=85.58 E-value=40 Score=41.40 Aligned_cols=223 Identities=12% Similarity=0.105 Sum_probs=107.1
Q ss_pred ChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCC--
Q 000098 1471 AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTD-- 1548 (2256)
Q Consensus 1471 ~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d-- 1548 (2256)
..+.++.|.+.++....+.|..- .+.+..-+.++.|.+..||..|+.-|..||+. ..+..+.+.|.++++.
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la----~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~s 109 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLA----DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKAS 109 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhh----hHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHH
Confidence 34556667777877777766532 24455566788899999999999999999875 2233333333333321
Q ss_pred ----------CChhHHH-HHHHHHh--cc-cccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1549 ----------PNDHTKY-SLDILLQ--TT-FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1549 ----------~~~~vr~-al~~L~~--~~-~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
.++.+|+ ++.-+.. .+ -......+.-..++..+...|.|-..+.-.....+++++-.. +. +.-.
T Consensus 110 l~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~-~~-k~~~ 187 (460)
T KOG2213|consen 110 LTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSL-QT-KAGE 187 (460)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-cC-CCCH
Confidence 1334443 4433332 01 111122333344555556666665444333444455555432 21 1111
Q ss_pred hhhhhhhHHHHHh-----hcCCCHHHHHHHHHHH----HHHHHhhCcC-chHH----HHHHHHHHhhcCCCHHHHHHHHH
Q 000098 1615 PYIGLLLPEVKKV-----LVDPIPEVRSVAARAI----GSLIRGMGEE-NFPD----LVSWLLDALKSDNSNVERSGAAQ 1680 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~-----L~d~~~~VR~~a~~aL----~~L~~~~g~~-~~~~----lip~Ll~~L~~~~~~~~R~~aa~ 1680 (2256)
.-+..+....-.. ++-.+++.-...+.|+ .-+++..... |+.. ++|.-...+. ...+.....
T Consensus 188 a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~----e~rkL~lLK 263 (460)
T KOG2213|consen 188 ARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLT----EERKLDLLK 263 (460)
T ss_pred HHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccch----HHHHHHHHH
Confidence 1222333222211 1112333333333333 3333333322 2222 3333111111 223445566
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHhcc
Q 000098 1681 GLSEVLAALGTVYFEHILPDIIRNCS 1706 (2256)
Q Consensus 1681 ~L~~i~~~~g~~~l~~ll~~ll~~l~ 1706 (2256)
.++++......+...+.+|.+++.+.
T Consensus 264 ~lAEMss~ttaq~a~q~Lpsi~elLk 289 (460)
T KOG2213|consen 264 ALAEMSSYTTAQAARQMLPSIVELLK 289 (460)
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHH
Confidence 77777766655566777777777654
No 223
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.79 E-value=6.3 Score=38.96 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=58.2
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000098 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2256)
Q Consensus 1461 p~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 1540 (2256)
...++.+.|+..-+|..++..|..+..... ......+.++..+...++|+++-|=-+|.++|..++...++ .++|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl~ 80 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVLP 80 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHHH
Confidence 344455556666666667777777776544 22234578888899999999999999999999999987654 3455
Q ss_pred HHHhhhCCC
Q 000098 1541 TLLMGLTDP 1549 (2256)
Q Consensus 1541 ~Ll~~l~d~ 1549 (2256)
.|++...|+
T Consensus 81 ~L~~~y~~~ 89 (92)
T PF10363_consen 81 ILLDEYADP 89 (92)
T ss_pred HHHHHHhCc
Confidence 555554443
No 224
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.12 E-value=1.6e+02 Score=39.00 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=83.7
Q ss_pred HHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-h--------hHHhHHHHHHhhhCCCCh
Q 000098 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P--------EIASLVPTLLMGLTDPND 1551 (2256)
Q Consensus 1481 ~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~--------~i~~lv~~Ll~~l~d~~~ 1551 (2256)
.+..+.+..|..+-.. ...+.++|..++-..|-+..++++++...+.. + .++.++..+...+.|..+
T Consensus 285 Fl~kls~l~p~i~lrq----~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 285 FLNKLSELSPGIMLRQ----YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHhhcCchHHHHH----HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 3444444444433222 23455678888888999888998888876542 2 346778888889999999
Q ss_pred hHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1552 HTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1552 ~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
++| .+++.+...--........-+.+...+.+.+.|++.-||+.|......+..
T Consensus 361 y~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 998 477777652112222233456788889999999999999999988877653
No 225
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.38 E-value=1.6e+02 Score=38.48 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcC-
Q 000098 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD- 1669 (2256)
Q Consensus 1591 ~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~- 1669 (2256)
+-|......+..++.++++.+.+. .+...+.. +.+.|+.-+++...+..++..+.++ -++++|.+++.+.+-
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~e~lk----~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-e~~i~pevl~~i~nlp 439 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSDECLK----QMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-ENTIMPEVLKLICNLP 439 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHH----HHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-ccchHHHHHHHHhCCc
Confidence 567777778877777766533322 22222222 5779999999999999999987755 356788888777663
Q ss_pred CCHHHHHHHHHHHHHHHHHhcHh--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHH
Q 000098 1670 NSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2256)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~i 1738 (2256)
.....|..+..-+|++.+-+... .++.++..+...++... ....+..++..++.....+..+.++.+
T Consensus 440 ~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~ 508 (559)
T KOG2081|consen 440 EQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSL 508 (559)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 22336777777778777665433 55666666666666544 444444555555554444433343333
No 226
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=83.19 E-value=1.2e+02 Score=41.02 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--H-------HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh
Q 000098 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2256)
Q Consensus 1656 ~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~-------l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~ 1726 (2256)
+.++..-+..|....+.....+++-+|-.+..+.+.. + -+..+|.++..+...+..|...++.++..++..
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 4455554455554344445555555555554433322 1 145678899999999999999999999988764
Q ss_pred hChhHHHHH-HHHHHHHHHhcCCCC------HHHHHHHHHHHHHHH
Q 000098 1727 LGVQFQNYL-QQVLPAILDGLADEN------ESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1727 ~g~~f~~yl-~~ilp~Ll~~L~d~~------~~VR~~Al~al~~iv 1765 (2256)
.-. .+.+ ...+|-++..|-+.. +++-..++.++..|+
T Consensus 597 ~rn--k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 597 IRN--KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred chh--hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 432 2232 346778888776553 344455566666665
No 227
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=82.66 E-value=95 Score=41.95 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=87.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-
Q 000098 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ-------MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV- 1456 (2256)
Q Consensus 1385 ~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~-------llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v- 1456 (2256)
..+...++...-|++.-++..++.+.+. +..|+.. .+|.++..+..+++.|-.++..+++.+........+
T Consensus 525 ~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~li 603 (717)
T KOG1048|consen 525 LLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELI 603 (717)
T ss_pred HHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhh
Confidence 3444555777778777777777766543 3444443 468899998888888888888899888766554433
Q ss_pred -HhHHHHHHHhccC------CChhHHHHHHHHHHHHHhhChhhHhhhhh-hHHHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 000098 1457 -KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT-DTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1457 -~~ilp~Ll~~L~~------~~w~~R~~a~~~Lg~la~~~p~~l~~~L~-~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l 1526 (2256)
+..+|.++..|.+ .+|.+-..+|..|..+....+..-...+. .=++.++.... -.++++-++|+.-|..+
T Consensus 604 gk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 604 GKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred hcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 6788999988864 34777777777777777543332222111 22333333332 33456666666655554
No 228
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=82.60 E-value=1e+02 Score=36.59 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhc-cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCC
Q 000098 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2256)
Q Consensus 1433 ~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L-~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~ 1511 (2256)
...+.-+...++..++...+. ....+++.+...+ ++.+...+..+++.+..++...--++......+.+.+ =.|.
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l---~~~~ 172 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL---SLDY 172 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc---CCcc
Confidence 444555556778888877776 4456777777778 6777788888899988888543223333333333322 2355
Q ss_pred CHHHHHHHHHHHHHHHhhcCc----hh-HHhHHHHHHhhhCCCC
Q 000098 1512 HPKVQSAGQTALQQVGSVIKN----PE-IASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~~i~~----~~-i~~lv~~Ll~~l~d~~ 1550 (2256)
.|.|-+..+.-+.-+...-.+ +. ...++..+++.....+
T Consensus 173 rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 173 RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 666665544433332221111 11 2566777777666554
No 229
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.19 E-value=1.8e+02 Score=38.39 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=79.5
Q ss_pred hhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHH--hhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-HhcH
Q 000098 1616 YIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIR--GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA-ALGT 1691 (2256)
Q Consensus 1616 ~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~--~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~-~~g~ 1691 (2256)
.+..++..+..+.. ..+...-..+...+.++.. .++.+.++.++..|....... .....+-..+..++. ..|.
T Consensus 173 ~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~---~l~~~~w~~m~nL~~S~~g~ 249 (464)
T PF11864_consen 173 EISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV---SLCKPSWRTMRNLLKSHLGH 249 (464)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc---ccchhHHHHHHHHHcCccHH
Confidence 44555665555533 3334444677888888876 334456666776666554332 122223334455543 2233
Q ss_pred hHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhHhhhChhHHHH--HH--HHHHHHHHhcCCCCHHHHHHHHHHH
Q 000098 1692 VYFEHILPDIIRNCS------HQRASVRDGYLTLFKYLPRSLGVQFQNY--LQ--QVLPAILDGLADENESVRDAALGAG 1761 (2256)
Q Consensus 1692 ~~l~~ll~~ll~~l~------~~~~~vR~~al~~l~~La~~~g~~f~~y--l~--~ilp~Ll~~L~d~~~~VR~~Al~al 1761 (2256)
. .+..+...+. ..+..+-.||+..++.+....|++-.|- .. .++|.+...++..++.|--..+..+
T Consensus 250 ~----~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i 325 (464)
T PF11864_consen 250 S----AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLI 325 (464)
T ss_pred H----HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHH
Confidence 3 3333333331 2356666789999988776664421121 12 3788888888866655554555555
Q ss_pred HHHH-HHhh
Q 000098 1762 HVLV-EHYA 1769 (2256)
Q Consensus 1762 ~~iv-~~~~ 1769 (2256)
..++ +.++
T Consensus 326 ~~ll~~~~~ 334 (464)
T PF11864_consen 326 NRLLDGKYG 334 (464)
T ss_pred HHHHhHhhh
Confidence 5555 4443
No 230
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=81.34 E-value=2.5 Score=34.74 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
..+|.|+.++.+.+++|+..|+++|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999986
No 231
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.25 E-value=17 Score=45.17 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=89.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHH
Q 000098 1894 LASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2256)
Q Consensus 1894 L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l 1970 (2256)
+.+.+..+|+.|...+-++....... .+..+++-+.....|.+..+|......+..++...+++.+.++..-+++.+
T Consensus 67 lkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi 146 (393)
T KOG2149|consen 67 LKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYI 146 (393)
T ss_pred hcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHH
Confidence 47889999999999999998874433 345566666777788888999998888887777777777888889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhchhhHH
Q 000098 1971 RTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2256)
Q Consensus 1971 ~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2256)
..++....+++|..+...+..+....++....
T Consensus 147 ~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 147 SSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 99999999999999999999998877664433
No 232
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=80.22 E-value=26 Score=37.95 Aligned_cols=125 Identities=17% Similarity=0.100 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC----------------ch
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL----------------FE 1415 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~----------------~~ 1415 (2256)
..+|...+.+++.++...-+..+. +.++.+.+.+.. ++...+..+..+..+.+...+. +.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 356778888888888877666554 677888777765 3677778888888888776431 11
Q ss_pred HhHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHHhhhhHhhH--HhHHHHHHHhccCCChhHHHHHHHHH
Q 000098 1416 PYVIQMLPLLLVAFSDQ----VVAVREAAECAARAMMSQLSAQGV--KLVLPSLLKGLEDKAWRTKQSSVQLL 1482 (2256)
Q Consensus 1416 pyv~~llp~ll~~l~D~----~~~VR~aa~~al~~l~~~l~~~~v--~~ilp~Ll~~L~~~~w~~R~~a~~~L 1482 (2256)
.....++..+...+... ...+...+..++...+...+...+ ..+++.+++.+.+++- +..|+++|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 11223344444433322 267788888888888776665554 3578888888865544 66666654
No 233
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=79.65 E-value=10 Score=38.69 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHH
Q 000098 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 2199 (2256)
Q Consensus 2126 ~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~ 2199 (2256)
...|..++.+++.+.+.++..+..+.++++..|...++. ++.|..|..|...+++.++.+.+.+++..+.-.
T Consensus 29 ~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~ 100 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLLDQIFAA 100 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345888999999999988888888999988888888874 459999999999999999987777666655433
No 234
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=78.27 E-value=1.9e+02 Score=36.84 Aligned_cols=212 Identities=19% Similarity=0.227 Sum_probs=112.6
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhHhh-H-HhHHH-HHHHhcc--CCChhHHHHHHHHHHHHHhh--ChhhHhhhhhhH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-V-KLVLP-SLLKGLE--DKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKI 1500 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~~~-v-~~ilp-~Ll~~L~--~~~w~~R~~a~~~Lg~la~~--~p~~l~~~L~~I 1500 (2256)
.+.|+ ..||-++...++-+......-. + +.-++ .+...++ .+.--.|..|+.++..+.+. .++.+. ..+
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~---~~v 109 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP---RGV 109 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC---HHH
Confidence 34454 9999999988887765432211 1 11122 2233343 24556899999999999987 444432 368
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH---HhHHHHHHhhhCCCChhHHH-HHHHHHh----cccccCC-Ch
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLTDPNDHTKY-SLDILLQ----TTFVNTV-DA 1571 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i---~~lv~~Ll~~l~d~~~~vr~-al~~L~~----~~~~~~~-~~ 1571 (2256)
+..++.+.++++...|..|.++|..++-. +|++ -.-+..+.+.+.|+.-...+ .+.++.. ...-.+. ..
T Consensus 110 vralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~ 187 (371)
T PF14664_consen 110 VRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPG 187 (371)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCC
Confidence 88889999999999999999999888743 4443 23345555555554322222 2222222 0000000 00
Q ss_pred hhHhhHHHHHHHh----hcCCCH-HHHHHHHHHHHHHhhhcCCCCcchhhh---hhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1572 PSLALLVPIVHRG----LRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1572 ~~l~~i~p~L~~~----L~d~~~-~vR~~a~~~l~~L~~~l~~~~~l~~~l---~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
-.+..++..+... ..+... +.-..+..++..+.+ ....+.-+. -.-+..+...+.-|.+++|......+
T Consensus 188 ~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr---sW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll 264 (371)
T PF14664_consen 188 FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR---SWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLL 264 (371)
T ss_pred ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh---cCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1122222222221 111111 122344445555443 222211110 13456677777888888888877776
Q ss_pred HHHHH
Q 000098 1644 GSLIR 1648 (2256)
Q Consensus 1644 ~~L~~ 1648 (2256)
-.+..
T Consensus 265 ~dllr 269 (371)
T PF14664_consen 265 FDLLR 269 (371)
T ss_pred HHHHC
Confidence 66554
No 235
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=78.07 E-value=2.3e+02 Score=37.08 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=52.6
Q ss_pred cChhHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-----------chhchHHHHhhhcCCCChhh
Q 000098 1874 NTPKTLK---EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-----------VLPSIIPILSRGLKDPSASR 1939 (2256)
Q Consensus 1874 ~~~~~l~---~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-----------~l~~llp~L~~~l~d~~~~v 1939 (2256)
..|+.++ .++.+.+..+.+.+...++.++.+|+.++-.+++++.-. +...++..+...-.|-.|..
T Consensus 556 QYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ 635 (1053)
T COG5101 556 QYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQ 635 (1053)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHH
Confidence 3455443 456667777777788889999999999999999987432 34444444444333434555
Q ss_pred HHhHHHHHHHHHHhhC
Q 000098 1940 RQGVCIGLSEVMASAG 1955 (2256)
Q Consensus 1940 R~~a~~aL~eii~~~~ 1955 (2256)
....-.+++-++....
T Consensus 636 ~htfYeAcg~vIse~p 651 (1053)
T COG5101 636 KHTFYEACGMVISEVP 651 (1053)
T ss_pred HhHHHHHHhHHHhccc
Confidence 5555555565555443
No 236
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=77.24 E-value=20 Score=38.92 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh----------------hhHhhhhh
Q 000098 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----------------QQLSQCLP 1498 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p----------------~~l~~~L~ 1498 (2256)
.||.....++..++.+.-+..++.+++.+++.+.. +.......+.+|..+.+... +.+....+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 45666666666666665555566677777766665 34444445555555554321 11344566
Q ss_pred hHHHHHHHhhcCCC----HHHHHHHHHHHHHHHhhcCchhH--HhHHHHHHhhhCCCCh
Q 000098 1499 KIVPKLTEVLTDTH----PKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPND 1551 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~----~~VR~aA~~aL~~l~~~i~~~~i--~~lv~~Ll~~l~d~~~ 1551 (2256)
.+++.+.+++.... .++...+..+++.+...+....+ ..+++.+.+.+.+|+-
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~ 140 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL 140 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH
Confidence 77777777775433 78888999999998886654444 4578888888866643
No 237
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.97 E-value=4e+02 Score=39.25 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 000098 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2256)
Q Consensus 2110 ~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL 2177 (2256)
..++..+++...+++++..|..|+..+..+....+..+...+++.+|.+-.++.|.+.+|-..+...+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li 1606 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLI 1606 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999988766665533
No 238
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.88 E-value=3.2e+02 Score=38.10 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=56.1
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
..++.+.....+.+|++|.+-.+...-+...|...+..+-.-++..++.+-+|++++.+..+...+..+.+...+
T Consensus 278 ~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~~n 352 (1014)
T KOG4524|consen 278 IALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQLHN 352 (1014)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 344555555577899999876666666666666666666667788888889999999999999999888776543
No 239
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.48 E-value=27 Score=43.39 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=89.7
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh---HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhh-ChhhHhhhhh
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-APQQLSQCLP 1498 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~---v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~-~p~~l~~~L~ 1498 (2256)
..++..++..+..||..|...+..+....+..- ...+++.+.+.+.|.+..+|.+...++..+++. ++++++.+..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 344556788999999999999998877633321 245677777888899999999999999987766 4666788888
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
-+++.+...+.+..+.||.-+..-+..+.+.+++.
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 88999988999999999999999999998887643
No 240
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.38 E-value=93 Score=38.73 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=73.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchH---HHHHHHHHHhhcCCCH---HHHHHHHHHHHHHHHHhcHh--
Q 000098 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSN---VERSGAAQGLSEVLAALGTV-- 1692 (2256)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~---~lip~Ll~~L~~~~~~---~~R~~aa~~L~~i~~~~g~~-- 1692 (2256)
...++..+..+++.++..++..++.+....+..... ++++.+++.+.+.... ..+..++++++.++..-.-.
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~ 186 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV 186 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH
Confidence 345556788889999999999999998766544333 6788888888764333 23356667777776322111
Q ss_pred HH-HHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 000098 1693 YF-EHILPDIIRNC-----SHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADE-NESVRDAALGAGHV 1763 (2256)
Q Consensus 1693 ~l-~~ll~~ll~~l-----~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~-~~~VR~~Al~al~~ 1763 (2256)
.+ ...++.+...+ .+....+.-.+-.++....-+|.+.....+ ..++|.+.+.+++. .+.|-..++.++..
T Consensus 187 f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 187 FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN 266 (312)
T ss_dssp HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11 34455555555 222333333322233333334444332222 23777777776644 34444444555544
Q ss_pred HH
Q 000098 1764 LV 1765 (2256)
Q Consensus 1764 iv 1765 (2256)
++
T Consensus 267 l~ 268 (312)
T PF03224_consen 267 LL 268 (312)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 241
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.35 E-value=48 Score=35.94 Aligned_cols=95 Identities=13% Similarity=0.195 Sum_probs=75.8
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcc
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D-~d~~Vr~~A~~aL~~l~~~ 2183 (2256)
+.+....+..|...+.+.++.+-..|+.++..+.+++|..+-..+ ..++..|.+++.+ .+..|++.+...+..+...
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 466778888888889999999999999999999999998765433 5678888888888 7889999999999999887
Q ss_pred CCCCchhchHHHHHHHHh
Q 000098 2184 VPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2184 l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+.+.--.++..+++.|.
T Consensus 112 f~~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 112 FKNDPSLSLMSDLYKKLK 129 (144)
T ss_pred hCCCcccHHHHHHHHHHH
Confidence 776533345566666665
No 242
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=74.97 E-value=2e+02 Score=34.72 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=20.6
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~ 1606 (2256)
....+.+.+.+|+.+.... ..+...+..+...
T Consensus 61 ~f~Glq~Ll~KGL~Ss~t~--e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSSTY--ELTLRLLSRLTPL 92 (262)
T ss_pred CchhHHHHHhCccCCCCcH--HHHHHHHHHHhcC
Confidence 4556888899999876432 3355566666653
No 243
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=74.83 E-value=2.7e+02 Score=36.15 Aligned_cols=253 Identities=15% Similarity=0.165 Sum_probs=119.3
Q ss_pred CCChhHHHHHHHHHHHHHhhChhhH-hhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH-HhHHHHHH
Q 000098 1469 DKAWRTKQSSVQLLGAMAYCAPQQL-SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI-ASLVPTLL 1543 (2256)
Q Consensus 1469 ~~~w~~R~~a~~~Lg~la~~~p~~l-~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i-~~lv~~Ll 1543 (2256)
+.+|..-....+.|..+....+.+. ..++ ..++..|+.++..++++-|......|..+-..+.+ +.+ +.+...+.
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~ 180 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFY 180 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4667766666777777776644321 1222 26778888999999999999999888887665433 233 44555555
Q ss_pred hhhCCCC--hhHHHHHHHHHh--cccccCCChhhHhhHHHHHHHhhcCCCHH-HHHHHHHHHHHHhhhcCCCCcchhhhh
Q 000098 1544 MGLTDPN--DHTKYSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAE-TKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2256)
Q Consensus 1544 ~~l~d~~--~~vr~al~~L~~--~~~~~~~~~~~l~~i~p~L~~~L~d~~~~-vR~~a~~~l~~L~~~l~~~~~l~~~l~ 1618 (2256)
+.+.+.. ..+.+.++.++. ..|.......+...+..++..+.+.+... -...-..++..+++ .++. ...
T Consensus 181 ~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~--kdp~----l~~ 254 (409)
T PF01603_consen 181 RFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE--KDPS----LAE 254 (409)
T ss_dssp HHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH--H-GG----GHH
T ss_pred HHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH--hCch----hHH
Confidence 5554332 234456666554 22332233323333333333333332211 11222223333332 1221 112
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc---CCCHHHHHHHHHH-----HHHHHHHhc
Q 000098 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS---DNSNVERSGAAQG-----LSEVLAALG 1690 (2256)
Q Consensus 1619 ~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~---~~~~~~R~~aa~~-----L~~i~~~~g 1690 (2256)
.++..+....--.++.-......-+..+.+.+++..+..+.+.++..+.. .....+-..|..- +..++....
T Consensus 255 ~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~ 334 (409)
T PF01603_consen 255 PVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNS 334 (409)
T ss_dssp HHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTH
T ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhCh
Confidence 23333333333334444444556666666666655455555555444332 2344444444422 222332222
Q ss_pred HhHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhHhhh
Q 000098 1691 TVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSL 1727 (2256)
Q Consensus 1691 ~~~l~~ll~~ll~~l~-~~~~~vR~~al~~l~~La~~~ 1727 (2256)
...+.-+.|.+.++.+ +-+..||..+..++..+...-
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 2233334444444332 347789988888777665543
No 244
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.97 E-value=1.4e+02 Score=42.88 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh----hhHhhHH----hHHHHHHHhccC---CChhHHH-------HHHHH
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVK----LVLPSLLKGLED---KAWRTKQ-------SSVQL 1481 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~----l~~~~v~----~ilp~Ll~~L~~---~~w~~R~-------~a~~~ 1481 (2256)
-++..+.++..|+.+.||..|.+++-++... +++..+. .++-+++..... ++|..+. ..+..
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence 3566777888999999999999998877643 2332232 223333332211 3454432 36778
Q ss_pred HHHHHhhChhhHhh---------hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1482 LGAMAYCAPQQLSQ---------CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1482 Lg~la~~~p~~l~~---------~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
++.++...++++.. ....++..+.....|..+++..+|..+++.+...
T Consensus 1077 isgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 88888887776432 2344555556667899999999999999887653
No 245
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=73.67 E-value=91 Score=37.52 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=74.9
Q ss_pred chhhhhhhhhcCc-hh--hhHHHHHHHHHHHhCCCccccHhhHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhcchhcHH
Q 000098 2036 VLPHILPKLVHLP-LS--AFNAHALGALAEVAGPGLNFHLGTILPALLSAM-GDDDMDVQSLAKEAAETVTLVIDEEGVE 2111 (2256)
Q Consensus 2036 ~lp~li~~L~~~p-~~--~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l-~~~~~~vr~~a~~al~~l~~~~~~~~~~ 2111 (2256)
.+|.++..+.++. +. .....+-..|+..+...=.+.+..++..+.+.- ++.+ +.....+..+..++..++-.
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~----dfl~~v~~~l~~~f~P~~~~ 187 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKD----DFLSQVVSYLREAFFPDHEF 187 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHhCchhHH
Confidence 3455555554443 21 222233333444443333456666666665542 2222 33334445555554444445
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCC
Q 000098 2112 SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166 (2256)
Q Consensus 2112 ~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d 2166 (2256)
..+..+++.+.+..+-.|..+...+..+++..... .++.++++.++++.+..+.
T Consensus 188 ~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 188 QILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCcc
Confidence 56667788888877889999999999999876555 4588889999999886543
No 246
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.31 E-value=8 Score=43.15 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCch
Q 000098 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2256)
Q Consensus 2110 ~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l 2189 (2256)
...+++.+..++.+-+...|-.|-..+..+....+..+.|.++++|.++-..|...|.+|...+..+|..++...+- ..
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~-vG 190 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGC-VG 190 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc-cc
Confidence 46788889999988888899999999999999999999999999999999999999999999999999998765542 24
Q ss_pred hchHHHHHHHHhhhh
Q 000098 2190 PSYIKVIRDAISTSR 2204 (2256)
Q Consensus 2190 ~~lv~~l~~~l~~~~ 2204 (2256)
..++|.-||.|.-.+
T Consensus 191 ~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 191 AALVPFYRQLLPVLN 205 (262)
T ss_pred hhhhhHHHHhhhhhh
Confidence 567777776665443
No 247
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=73.16 E-value=53 Score=44.82 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=80.9
Q ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChhhHHhHH
Q 000098 1868 WKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVC 1944 (2256)
Q Consensus 1868 l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~vR~~a~ 1944 (2256)
+...+...|..+..+-..|.....+-+.......-..|.+++..++..|.++ +...++.++...+.+..++.+...|
T Consensus 39 L~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~ 118 (819)
T KOG1877|consen 39 LTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGT 118 (819)
T ss_pred HHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehh
Confidence 4445555676777777777777766666666666678899999999988876 5678888888888877888888899
Q ss_pred HHHHHHHHhhCh--hhhHhhHhhHHHHHHHHhcC-CC----HHHHHHHHHHHHHHH
Q 000098 1945 IGLSEVMASAGK--SQLLSFMDELIPTIRTALCD-SI----LEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1945 ~aL~eii~~~~~--~~l~~~l~~li~~l~~~L~D-~~----~~VR~~A~~al~~l~ 1993 (2256)
.++...+...+. ..... .+.+++.+...... ++ ..+|-+...++..++
T Consensus 119 ~sf~~F~~i~~d~~sy~~~-yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v 173 (819)
T KOG1877|consen 119 NSFVKFANIEEDGPSYHRN-YDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVV 173 (819)
T ss_pred hHHHHHHhhcccCchhhhh-hHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHH
Confidence 998888765532 22211 24445544443322 22 234555555555444
No 248
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=73.12 E-value=63 Score=37.08 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHH
Q 000098 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2256)
Q Consensus 1862 ~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~ 1927 (2256)
...+.++.++....++...+++..++..+.+.-.+++...|..+-.|+|..++.+|++.+=+++|.
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPL 83 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPL 83 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCC
Confidence 334455555555555555666777777666666677788999999999999999998865566663
No 249
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.93 E-value=1.3e+02 Score=44.02 Aligned_cols=191 Identities=21% Similarity=0.190 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHH---HH-HHHhCCCCHHHHHHHHHHHHHHHHHhccC
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT---LR-EGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~---L~-~~l~~~~~~~~Re~al~al~~L~~~l~~~ 1413 (2256)
-+..++..|.+- |...+..|.+.|..++.....+..+ .|++. +. +.+.+. +.++|......+..+...+++.
T Consensus 42 el~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~~~e~~~--~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 42 ELDIIVKKLLKR-DETTKIKALQELSELIDTSDTEELK--GILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHHhcc-ChHHHHHHHHhHHHhcccccchHHh--hhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666554 4688888999998888766544433 23332 22 333444 8999999999999999999999
Q ss_pred chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-----HhHHHHHHHhc--------cC-----------
Q 000098 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGL--------ED----------- 1469 (2256)
Q Consensus 1414 ~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-----~~ilp~Ll~~L--------~~----------- 1469 (2256)
+.||+..++|.++-..-|....|-.+|..+.......-....+ ..+.+.+.+.+ .+
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~ 197 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELES 197 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHH
Confidence 9999999999999999999999988888777765441111111 22333332221 11
Q ss_pred CChhHHHHHHHHHHHHHhhChh--hH---hhhhhhHH--HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1470 KAWRTKQSSVQLLGAMAYCAPQ--QL---SQCLPKIV--PKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1470 ~~w~~R~~a~~~Lg~la~~~p~--~l---~~~L~~Iv--p~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
...|+-..++.++..+...... .+ +..+..++ ..+...+.++.|.++.+..+.+..+.+.+.+
T Consensus 198 k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 198 KYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred hhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 2234444566666665533221 11 12222222 3566788999999999999999988877653
No 250
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.64 E-value=2.1e+02 Score=33.96 Aligned_cols=117 Identities=14% Similarity=0.025 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc-C
Q 000098 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-D 1469 (2256)
Q Consensus 1392 ~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l-~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~-~ 1469 (2256)
.|+..-+...++..+|...++ +-.++++.+..++ ++.++.++..+.+++..++..-- -++......+...++ +
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v-vd~~s~w~vl~~~l~~~ 171 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV-VDFYSAWKVLQKKLSLD 171 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHhcCCc
Confidence 455544444555666666554 5567778888888 78888888888889888873211 112333334444442 1
Q ss_pred CChhHHHHHHHHHHHHHhh--ChhhHhhhhhhHHHHHHHhhcCCCH
Q 000098 1470 KAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPKLTEVLTDTHP 1513 (2256)
Q Consensus 1470 ~~w~~R~~a~~~Lg~la~~--~p~~l~~~L~~Ivp~L~~~L~D~~~ 1513 (2256)
....+-+.-+..++-+..+ ..++....-..++..+.+...+.+.
T Consensus 172 ~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 172 YRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred cchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 2222222222222222211 1233444555777777777776653
No 251
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.46 E-value=2.1e+02 Score=34.60 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=56.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHH
Q 000098 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2256)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2256)
.+++++.+.+|.||++|...+..+... +.. +-...++.+.+.+.++.. .+.|..++.+..--......-++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999888777654 211 124566777777777655 33333333321100000111122233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1579 p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
..+...+.+..+..-...|..+.|+++
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 444444555544445556667777765
No 252
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=71.43 E-value=5.9 Score=32.51 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q 000098 2153 NMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2153 ~il~~L~~~l~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
..++.|+.+|.+++.+|++.|++||+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999875
No 253
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=70.79 E-value=2.9e+02 Score=34.80 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHhhc
Q 000098 2112 SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----DSDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2112 ~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~-----D~d~~Vr~~A~~aL~~l~~ 2182 (2256)
.++..+..|+.+.+...-..+.-++|.|+.+....+.-.-.+++..|+.++. |.|.++.-+++.||-.+..
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 3888999999999998888899999999986543332233456666666663 4455666688888887654
No 254
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=70.72 E-value=5.3e+02 Score=37.81 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhC
Q 000098 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT 1547 (2256)
Q Consensus 1496 ~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~ 1547 (2256)
+++.|+-.++..+.....++|.++-.++.++.+.+++.+...+++.+...+.
T Consensus 561 ~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl~ 612 (1364)
T KOG1823|consen 561 NLPSILLDICYLLRSRSAELRDASRKTLAKIIKILGPKYLYFVIKELQTTLK 612 (1364)
T ss_pred cCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5888888889999999999999999999999999998887777777665554
No 255
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=70.37 E-value=92 Score=35.79 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000098 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2256)
Q Consensus 1478 a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 1540 (2256)
.+.+++.+.......-.+.+..++..+.++-.+++-..|..+-.+++...+.+|...+-.++|
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 344555555554444445666777777777777777899999999999999888665555555
No 256
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=70.20 E-value=2.9e+02 Score=34.61 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=51.1
Q ss_pred hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHH
Q 000098 1773 LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV 1852 (2256)
Q Consensus 1773 ~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~ 1852 (2256)
++.+.......+.++|+-+|+.++.++|+++..-+ . ...+..-++ ..+-+..++..
T Consensus 207 ~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~------------------n---~~vm~~yi~---~~~nLkl~M~l 262 (335)
T PF08569_consen 207 YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRS------------------N---FNVMTRYIS---SPENLKLMMNL 262 (335)
T ss_dssp HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGG------------------G---HHHHHHHTT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchh------------------H---HHHHHHHHC---CHHHHHHHHHH
Confidence 44456667777889999999999999999983200 0 011111111 12345555666
Q ss_pred hcCCcHHHHHHHHHHHHHHHhcC
Q 000098 1853 RSDVSLSVRQAALHVWKTIVANT 1875 (2256)
Q Consensus 1853 ~~D~~~~Vr~aA~~~l~~l~~~~ 1875 (2256)
+.|.+..++-.|.++++.++.|.
T Consensus 263 L~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 263 LRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp TT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hcCcchhhhHHHHHHHHHHHhCC
Confidence 89999999999999999999874
No 257
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=70.06 E-value=40 Score=35.26 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC-----CC------CHHHHHHHHHH
Q 000098 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-----DE------NESVRDAALGA 1760 (2256)
Q Consensus 1692 ~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~-----d~------~~~VR~~Al~a 1760 (2256)
..+..++..+.+.+++.+++||--++.++-+++....+.|...+..=...+-.+.+ |+ ...||..|.++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 35778999999999999999999999999999999888887776654444433221 21 34678877777
Q ss_pred HHHHH
Q 000098 1761 GHVLV 1765 (2256)
Q Consensus 1761 l~~iv 1765 (2256)
+..|.
T Consensus 114 ~~~if 118 (122)
T cd03572 114 IKAIF 118 (122)
T ss_pred HHHHh
Confidence 66553
No 258
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=69.18 E-value=3e+02 Score=34.35 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcC
Q 000098 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785 (2256)
Q Consensus 1736 ~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~ 1785 (2256)
...+..-+....|++-.||..|.+.+..+++. +.++.+.|.+.+.+.
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLN 106 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHH
Confidence 34455566777888889999999888777653 445556666665554
No 259
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.18 E-value=14 Score=38.27 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=42.9
Q ss_pred hHHHHhhhcCC-CChhhHHhHHHHHHHHHHhhChhhhHhhH--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1924 IIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1924 llp~L~~~l~d-~~~~vR~~a~~aL~eii~~~~~~~l~~~l--~~li~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
++..|.+.+.. .++.+...+|.-|++++...+.. ...+ -..-..++..+.+++++||..|..|+..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44445555532 25666677888888888766321 1111 224566778899999999999988887765
No 260
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.80 E-value=87 Score=38.98 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=78.2
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc----CCCHHHHHHHHHHHHHHHhhcCch-
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT----DTHPKVQSAGQTALQQVGSVIKNP- 1533 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~----D~~~~VR~aA~~aL~~l~~~i~~~- 1533 (2256)
.+.+++..+..++|.+...|+..+..++...+........++++.++..+. .++..++..|..+|..+...-...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 456666788888999999999999999988776544322345555555544 345667788889998887532111
Q ss_pred -hH-HhHHHHHHhhh-----CCCChhHHHHHHHHHh---cccccCCCh-hhHhhHHHHHHHhhcC-CCHHHHHHHHHHHH
Q 000098 1534 -EI-ASLVPTLLMGL-----TDPNDHTKYSLDILLQ---TTFVNTVDA-PSLALLVPIVHRGLRE-RSAETKKKAAQIVG 1601 (2256)
Q Consensus 1534 -~i-~~lv~~Ll~~l-----~d~~~~vr~al~~L~~---~~~~~~~~~-~~l~~i~p~L~~~L~d-~~~~vR~~a~~~l~ 1601 (2256)
.+ ...++.+...+ .+.....+-.++.+.. .+|....-. -.-..++|.+...+++ ....+-+-+..++.
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~ 265 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILR 265 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11 45556666665 2222223222222221 234322100 0112267777776654 34566667777777
Q ss_pred HHhh
Q 000098 1602 NMCS 1605 (2256)
Q Consensus 1602 ~L~~ 1605 (2256)
|+.+
T Consensus 266 Nl~~ 269 (312)
T PF03224_consen 266 NLLS 269 (312)
T ss_dssp HTTS
T ss_pred HHHh
Confidence 7776
No 261
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=67.77 E-value=12 Score=37.04 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCC--ChhhHHhHHHHHHHH
Q 000098 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP--SASRRQGVCIGLSEV 1950 (2256)
Q Consensus 1896 ~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~--~~~vR~~a~~aL~ei 1950 (2256)
++++..|..|++.|+.+++.++.. ..+.+...+.+.+.|+ ...++.|+..+|.++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999865 4678888888888876 356889999988766
No 262
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=67.38 E-value=85 Score=33.90 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=71.2
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCCCC-h-H--HHHHHHHHHHHh
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSD-S-T--TVAAAWEALSRV 2180 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D~d-~-~--Vr~~A~~aL~~l 2180 (2256)
..+....+..|...+++.++.+...|+..+..+.+++|..+-..+ ..++..|.+++.++. . . |++.+...+..+
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 466788888899999999999999999999999999988775543 457778888775432 2 2 999999999998
Q ss_pred hccCCCCchhchHHHHHHHHh
Q 000098 2181 VASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2181 ~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
....+.+.--.++..+++.|.
T Consensus 117 ~~~f~~~~~~~~i~~~y~~Lk 137 (140)
T PF00790_consen 117 AEAFKSDPELSLIQDTYKRLK 137 (140)
T ss_dssp HHHTTTSTTGHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHH
Confidence 887754433334445555444
No 263
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.14 E-value=8.1 Score=32.03 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=30.7
Q ss_pred HHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 000098 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2256)
Q Consensus 1481 ~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~a 1522 (2256)
+|+.+....|.-+.. +.+...+...+.|+++.||.+|...
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 456666666665533 4788888899999999999999865
No 264
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.08 E-value=82 Score=34.09 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=71.7
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcc
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~-D~d~~Vr~~A~~aL~~l~~~ 2183 (2256)
..+....+..|...+++.++.+-.-|+.++..+.+++|..+-..+ ..++..|.+++. ..+..|++.+...+-.+...
T Consensus 36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 456778888888899999999999999999999999887654432 457777777776 56789999999999998877
Q ss_pred CCCCchhchHHHHHHHHh
Q 000098 2184 VPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2184 l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+.+.--..+..+++.|.
T Consensus 116 f~~~~~l~~i~~~y~~L~ 133 (142)
T cd03569 116 FRNKPQLKYVVDTYQILK 133 (142)
T ss_pred hCCCcccHHHHHHHHHHH
Confidence 765422233445555554
No 265
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=65.93 E-value=53 Score=34.34 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=55.6
Q ss_pred hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHH---HHHHHHHHcC--------CCChHHHHHHHHH
Q 000098 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPN---MISTLIVLLS--------DSDSTTVAAAWEA 2176 (2256)
Q Consensus 2108 ~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~---il~~L~~~l~--------D~d~~Vr~~A~~a 2176 (2256)
.....++..|...+++.++.++.-++..|-++|..+..++...+.. +|..+...-. ++...||..|-++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 4567899999999999999999999999999999887776655433 4444433222 2235799999999
Q ss_pred HHHhh
Q 000098 2177 LSRVV 2181 (2256)
Q Consensus 2177 L~~l~ 2181 (2256)
+..+.
T Consensus 114 ~~~if 118 (122)
T cd03572 114 IKAIF 118 (122)
T ss_pred HHHHh
Confidence 88764
No 266
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.23 E-value=4.6e+02 Score=35.03 Aligned_cols=107 Identities=17% Similarity=0.289 Sum_probs=77.3
Q ss_pred cHhhHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhh
Q 000098 2071 HLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD 2149 (2256)
Q Consensus 2071 ~l~~Ilp~Ll~~l~-~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~ 2149 (2256)
|...-+|.++..+. ++++.+|..+.-+++++...+. ...+..-..|...+.|++..+|+.|+-.+..+.-.....+..
T Consensus 930 fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN-~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKG 1008 (1128)
T COG5098 930 FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN-TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKG 1008 (1128)
T ss_pred HHHHHHHHHHHHHhhCCCcceeccceeeccccceehh-hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeecc
Confidence 55666677777775 6778888888777777765431 223444456777788899999999999998888777666666
Q ss_pred hHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc
Q 000098 2150 EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2150 y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~ 2182 (2256)
+ +..+..+++|+|.++.+.|-.-+..+.+
T Consensus 1009 q----lg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 1009 Q----LGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred c----hhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 6 4456678889998888888777766654
No 267
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=64.71 E-value=71 Score=34.14 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=66.0
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhh-HH-HHHHHHHHHcCC---CChHHHHHHHHHHHHhh
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE-AP-NMISTLIVLLSD---SDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y-~~-~il~~L~~~l~D---~d~~Vr~~A~~aL~~l~ 2181 (2256)
+.+....+..|...+++.++.+...|+..+-.+.+++|..+... .. .++..|.+.+.+ .+..|++.+...+..+.
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 46678888889999999999999999999999999998866443 33 566678887765 47799999999999998
Q ss_pred ccCCCC
Q 000098 2182 ASVPKE 2187 (2256)
Q Consensus 2182 ~~l~~e 2187 (2256)
...+.+
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 877754
No 268
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.64 E-value=18 Score=40.52 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=66.6
Q ss_pred HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---c-
Q 000098 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---N- 1532 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~---~- 1532 (2256)
..++|.+.+++.+.+.-.|..|-+.+..+....++.+.+.+|+++..+...|...+.+|-..+.++|.++....+ .
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 467888888888777777777777777777777788888999999999999999999999999999998875433 1
Q ss_pred --hhHHhHHHHH
Q 000098 1533 --PEIASLVPTL 1542 (2256)
Q Consensus 1533 --~~i~~lv~~L 1542 (2256)
|+..+++|.+
T Consensus 193 LVPfYRQlLp~~ 204 (262)
T KOG3961|consen 193 LVPFYRQLLPVL 204 (262)
T ss_pred hhhHHHHhhhhh
Confidence 3445555544
No 269
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=62.31 E-value=82 Score=33.67 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=71.4
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCCCC--hHHHHHHHHHHHHhhc
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSD--STTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D~d--~~Vr~~A~~aL~~l~~ 2182 (2256)
..+....+..|...+++.++.+-.-|+..+..+.+++|..+-..+ ..++..|...+.++. +.|++.+...+..+..
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 466788888899999999999999999999999999988765433 457788888887653 3399999999999887
Q ss_pred cCCCCchhchHHHHHHHHh
Q 000098 2183 SVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2183 ~l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+..+.-...+..+++.|.
T Consensus 112 ~f~~~~~~~~i~~~y~~L~ 130 (133)
T smart00288 112 AFKNDPDLSQIVDVYDLLK 130 (133)
T ss_pred HHcCCCCchHHHHHHHHHH
Confidence 7754433334445554443
No 270
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=62.20 E-value=5.7e+02 Score=37.51 Aligned_cols=209 Identities=12% Similarity=0.087 Sum_probs=106.5
Q ss_pred HHHHHHhcccccCCChh---hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhh---HHHHHhhc
Q 000098 1556 SLDILLQTTFVNTVDAP---SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL---PEVKKVLV 1629 (2256)
Q Consensus 1556 al~~L~~~~~~~~~~~~---~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll---~~L~~~L~ 1629 (2256)
+..+|.+.+|...-... +...++..+...|.....++....+.+|.||.= .....+...+..+- ......+.
T Consensus 371 a~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSW--RAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 371 AGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSW--RADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred HHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccc--cccccHHHHHHhhhhHHHHHHHHHH
Confidence 55555555554332111 223455666666665555555555555555542 11122222222211 11222233
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCcC-----chHHHHHHHHHHhhcCCCHH---HHH---HHHHHHHHHHHHhcHh--H--H
Q 000098 1630 DPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNV---ERS---GAAQGLSEVLAALGTV--Y--F 1694 (2256)
Q Consensus 1630 d~~~~VR~~a~~aL~~L~~~~g~~-----~~~~lip~Ll~~L~~~~~~~---~R~---~aa~~L~~i~~~~g~~--~--l 1694 (2256)
......-.+.+.||-.|....-+. ..+..+.+|..+|.-+.... ... +....++..+..+... . -
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 333333445566666665544332 23456777777776531110 000 1111223333333221 1 1
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000098 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~ 1767 (2256)
...+..+++.+++.+-.+-..+|..+..|..-...+ ..|+ ...++++.+++...+..+-.++..|+..++..
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 456777888887776666666666666555443332 2333 34678888999888888888888888877653
No 271
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=61.85 E-value=27 Score=39.77 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCch
Q 000098 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2256)
Q Consensus 2110 ~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l 2189 (2256)
+..+++.+++.+.+++..+|..|+..++...+.+=. +-...++.++.+..|+++.+|..|...+..+..+.+.=..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 356677777777788888888888888877764321 1134577777778888888888888888877655543223
Q ss_pred hchHHHHHHHHhhhh
Q 000098 2190 PSYIKVIRDAISTSR 2204 (2256)
Q Consensus 2190 ~~lv~~l~~~l~~~~ 2204 (2256)
..+...++.+....+
T Consensus 82 ~~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQR 96 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555544443
No 272
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=60.63 E-value=4.2e+02 Score=33.06 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHH-HHHHHHHHhhhhH---hhHHh----HHHHHHHhccC---CChhHHHHHHHHHHHH
Q 000098 1417 YVIQMLPLLLVAFSDQVVAVREAA-ECAARAMMSQLSA---QGVKL----VLPSLLKGLED---KAWRTKQSSVQLLGAM 1485 (2256)
Q Consensus 1417 yv~~llp~ll~~l~D~~~~VR~aa-~~al~~l~~~l~~---~~v~~----ilp~Ll~~L~~---~~w~~R~~a~~~Lg~l 1485 (2256)
+++.++..++....+..+..|+.- ...+..++..+.. +.+.. ++...+.++.+ +-+..|..=..+|.++
T Consensus 68 ~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i 147 (319)
T PF08767_consen 68 FIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAI 147 (319)
T ss_dssp THHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHH
Confidence 344444444444455556566544 4455555555544 22333 33444455543 4578899989999999
Q ss_pred HhhChhhHh----hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1486 AYCAPQQLS----QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1486 a~~~p~~l~----~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
...++..+. ..+..++..+.-++++++.+|...++.++..+.+.+.+
T Consensus 148 ~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 148 NEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 988766542 34567788888889999999999999999999887654
No 273
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=60.01 E-value=70 Score=37.20 Aligned_cols=139 Identities=19% Similarity=0.112 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-
Q 000098 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV- 1418 (2256)
Q Consensus 1340 ~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv- 1418 (2256)
..+...|..+...+.|..|...+........ ...++.+...+..-++|...+..+. ..+.+++
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~------~~~~~~~~~~~~~~~~W~~~D~~~~----------~~~~~~~~ 116 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLT------EEDLELLEKWLPDIDNWATCDSLCS----------KLLGPLLK 116 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--------HHHHHHHHHCCCCCCCHHHHHHHTH----------HHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhh------HHHHHHHHHHhccCCcchhhhHHHH----------HHHHHHHH
Confidence 3455566667667777766666544332221 1245666667776668865553311 1122222
Q ss_pred --HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1419 --IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1419 --~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
....+.+..-..+++..+|.++..++-... .....+.++..+...+.|.++.+|.+...+|..+....|+....+
T Consensus 117 ~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~---~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 117 KHPEALELLEKWAKSDNEWVRRAAIVMLLRYI---RKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp HHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHG---GGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred hhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 345677777788899999988865553332 224456677777777889999999999999998888777665444
Q ss_pred h
Q 000098 1497 L 1497 (2256)
Q Consensus 1497 L 1497 (2256)
+
T Consensus 194 l 194 (213)
T PF08713_consen 194 L 194 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 274
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=59.54 E-value=9.1e+02 Score=36.61 Aligned_cols=124 Identities=11% Similarity=0.090 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHH
Q 000098 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135 (2256)
Q Consensus 2056 aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~ 2135 (2256)
.+.......+..+..|++.++...-..+.++++.+++.+......++...+.-.-++++..|+..+.+.+...--+|+..
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~v 496 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDV 496 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34444444456667788888888888889999999999999999999987543456788888877766665555788999
Q ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHhh
Q 000098 2136 IGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS-TTVAAAWEALSRVV 2181 (2256)
Q Consensus 2136 l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~-~Vr~~A~~aL~~l~ 2181 (2256)
+..++...+..+.+|.. ++..++..+++=+. .+|+ ...-|+.++
T Consensus 497 L~~L~~~~~~~l~~fa~-~l~giLD~l~~Ls~~qiR~-lf~il~~La 541 (1426)
T PF14631_consen 497 LCELAEKNPSELQPFAT-FLKGILDYLDNLSLQQIRK-LFDILCTLA 541 (1426)
T ss_dssp HHHHHHH-HHHHHHTHH-HHHGGGGGGGG--HHHHHH-HHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHH-HHHHHHHHHhcCCHHHHHH-HHHHHHHHh
Confidence 99998877777776643 33344444444332 3333 244444443
No 275
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=58.46 E-value=1.2e+02 Score=33.00 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhhc
Q 000098 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1694 l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d-~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
-...+..|.+.+.+.++.+...++.++..+.+..|..|...+ ..++..+...+.+ .++.|+.-++..+......|..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 355667778888899999999999999999999999886554 3577777777777 5788998888888777776653
No 276
>PF05536 Neurochondrin: Neurochondrin
Probab=58.39 E-value=6.1e+02 Score=34.22 Aligned_cols=178 Identities=19% Similarity=0.239 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhhChhhH--hhhhhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhhhC
Q 000098 1474 TKQSSVQLLGAMAYCAPQQL--SQCLPKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLT 1547 (2256)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l--~~~L~~Ivp~L~~~L~D~~~-~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~ 1547 (2256)
.+..|+..|..++. ++++ .+.+-.-+|.+.+.+..... .+...|.++|..++..-..+ .+ ...++.|.+.+.
T Consensus 73 ~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 73 YLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHH
Confidence 44557777777665 4443 24455778889998876666 88889999999998432222 22 456677777766
Q ss_pred CCChhHHHHHHHHHhc--ccc---cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC-C---Ccchhhhh
Q 000098 1548 DPNDHTKYSLDILLQT--TFV---NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYIG 1618 (2256)
Q Consensus 1548 d~~~~vr~al~~L~~~--~~~---~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~-~---~~l~~~l~ 1618 (2256)
+.......++..+... ... .......+..+++.+.+.+.......|-..+..+..+...... + ..-..+.+
T Consensus 151 ~~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 151 NQSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred hCcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 6433333455544431 111 0122334556667777777666666777788888888764310 0 11223566
Q ss_pred hhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcC
Q 000098 1619 LLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1619 ~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
.+..++..++.+ ..+.-|..+....+.+.+..|.+
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 777788888775 56788999999999999988865
No 277
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=58.26 E-value=6.2e+02 Score=34.22 Aligned_cols=395 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchh-HHHHHHHHHh-hhhhccCChh
Q 000098 1142 SNYNVRLAAAEALATALDE-----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR-QGIALALHSA-ADVLRTKDLP 1214 (2256)
Q Consensus 1142 ~~~~vR~~aa~ala~~~~~-----~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R-~~~~~aL~~l-~~~~~~~~~~ 1214 (2256)
....+|.+..+..|++++. ....-...+..|... +.....-+.+ .....+++++ ....+.+..+
T Consensus 55 ~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~~---------~~~~~~~~~~~~~li~GMr~lrlk~~p~e~~e 125 (552)
T PF14222_consen 55 STSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEKL---------RKDSNDAESKIELLIMGMRYLRLKMYPEEAFE 125 (552)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHh---------cccCCchHHHHHHHHhhcceeeecCCCHHHHH
Q ss_pred HhHHHHHH--hhcCCC--CHHHHHHHHHHHHHHHHhhccccccch-HHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHh
Q 000098 1215 VIMTFLIS--RALADT--NADVRGRMLNAGIMIIDKHGRDNVSLL-FPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289 (2256)
Q Consensus 1215 ~l~~~lv~--~~l~D~--~~~VR~~a~~a~~~~i~~~g~~~~~~L-l~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~ 1289 (2256)
.-.+|+-. +.+.+. +.+|+.+..+...+++..-....-.++ .|..-+.+.. ++..+..++.+ .+
T Consensus 126 ~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~----------i~~~~~~~~~K-~k 194 (552)
T PF14222_consen 126 ESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVET----------IYPRAAKMMSK-PK 194 (552)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH----------HHHHHHHHHhC-cc
Q ss_pred hhccCCc----------------chH-HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh--------cCchHHHHHHHHH
Q 000098 1290 HLAKDDP----------------KVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM--------QDEAPTLVSRLLD 1344 (2256)
Q Consensus 1290 ~l~~~~~----------------~i~-~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~--------~~~~~~~l~~Ll~ 1344 (2256)
|....-| .+. .+++.+..-+++. ..|..+..|+..++-.+ ......-++.++.
T Consensus 195 hw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~ 272 (552)
T PF14222_consen 195 HWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFK 272 (552)
T ss_pred hhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHH
Q ss_pred HHhcCC--CHHHHH-HHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHhccC
Q 000098 1345 QLMKSD--KYGERR-GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNS--------AKRREGALLAFECLCEKLGRL 1413 (2256)
Q Consensus 1345 ~L~~~~--~~~vR~-~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~--------~~~Re~al~al~~L~~~l~~~ 1413 (2256)
.++... .|-.+. .-...+..++...|.... .+.+=..+.+.+..... |+.---++.++-.++..+...
T Consensus 273 ~lfp~~kk~~i~~D~~~~~~lv~ii~~I~~~~~-df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~ 351 (552)
T PF14222_consen 273 LLFPKGKKGWIPRDPEPLNPLVQIIRFIGYKHL-DFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQK 351 (552)
T ss_pred HHccCCCCcccCCChhhhhhHHHHHHhHhhhCc-chHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccC
Q ss_pred chH-------------------hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhc-------
Q 000098 1414 FEP-------------------YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL------- 1467 (2256)
Q Consensus 1414 ~~p-------------------yv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L------- 1467 (2256)
-.| +....++ .....++.....-+....+++.+...++..--...+-.-....
T Consensus 352 e~p~~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~ 430 (552)
T PF14222_consen 352 EKPPPPPPTSDPSGNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPF 430 (552)
T ss_pred CCCCCCCCcCCCCCcccccccCccccccc-chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCc
Q ss_pred -------cCCChhHHHHHHHHHHHHHhhChhhHhhhhh--hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1468 -------EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1468 -------~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~--~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
.++........++++....++.|.-+...++ .++..|....-+.++.||.+|..+|..++...+ .-..+
T Consensus 431 ~~f~f~~~~d~~~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p--~~~~v 508 (552)
T PF14222_consen 431 SSFSFGRNDDMVTDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP--NRQQV 508 (552)
T ss_pred ccccccccccccccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC--CHHHH
Q ss_pred HHHHHhhhCCCChhHHHH----------HHHHHh
Q 000098 1539 VPTLLMGLTDPNDHTKYS----------LDILLQ 1562 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr~a----------l~~L~~ 1562 (2256)
+..+.+.+-+.++..... ++.+..
T Consensus 509 i~~Fa~Fif~~~d~~~~~~~~~~l~~~~~~~~L~ 542 (552)
T PF14222_consen 509 ITGFARFIFRFDDKYPSMYDGGYLGSGEIESLLK 542 (552)
T ss_pred HHHHHHHHeeCcccCccchhhhccchHHHHHHHH
No 278
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=58.08 E-value=5.3e+02 Score=33.43 Aligned_cols=185 Identities=11% Similarity=0.179 Sum_probs=93.4
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---
Q 000098 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--- 1692 (2256)
Q Consensus 1619 ~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--- 1692 (2256)
.++..|...+..++++-|......+..+...+... ....+...+.+.+.......--.....-++.++.++...
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 56777888888888888888888888877655332 112222223333322211111122223344444443311
Q ss_pred ---------------------HHHH------------------HHHHHHHhccCCCHHHHHHHHHHHHHhHhhhC-hhHH
Q 000098 1693 ---------------------YFEH------------------ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQ 1732 (2256)
Q Consensus 1693 ---------------------~l~~------------------ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g-~~f~ 1732 (2256)
+..+ ++..+++..--.++.-...++.-+..+...++ .+|.
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~ 292 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQ 292 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHH
Confidence 0011 11111111111222222334445555555554 4677
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HHHHHhhccchhchHHHHHhhcC-CCCHHHHHHHHHHHHHHH
Q 000098 1733 NYLQQVLPAILDGLADENESVRDAALGAGH-----VLVEHYATTSLPLLLPAVEDGIF-NDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~-----~iv~~~~~~~~~~llp~L~~~l~-d~~~~iR~~sv~llg~ll 1803 (2256)
.....+...+-.++..++..|-+.|+.-+. .++.......++.+.|.+.+... +.+-.+|..+..++..+.
T Consensus 293 ~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 293 KIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 777888888888999999888887765432 23333333334445555554332 233468888888877764
No 279
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=57.89 E-value=4.7e+02 Score=32.79 Aligned_cols=205 Identities=18% Similarity=0.225 Sum_probs=121.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hchh------hH----HhHHHHHHHhhccCCchHHHHHHHHHHHhhh
Q 000098 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKS-AGMQ------AI----DEIVPTLLHALEDDQTSDTALDGLKQILSVR 2032 (2256)
Q Consensus 1964 ~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~-~g~~------~~----~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~ 2032 (2256)
..++..+...+..-+-+.|..++..|+.+... .|.. ++ ++++..|+...+..+..-.+-.-+++.+.+.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 34566666667666777777777777776653 2221 11 3455555555555443322222233332210
Q ss_pred cccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcc------
Q 000098 2033 TTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID------ 2106 (2256)
Q Consensus 2033 ~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~------ 2106 (2256)
.+ ...+.. .+ .+. .+++.+..++=++...+...+..++....
T Consensus 155 --~l--------------------~~~iL~--~~----~f~----~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~f 202 (335)
T PF08569_consen 155 --SL--------------------AKIILY--SE----CFW----KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEF 202 (335)
T ss_dssp --HH--------------------HHHHHT--SG----GGG----GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred --HH--------------------HHHHhC--cH----HHH----HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHH
Confidence 00 000000 11 122 24556667777788888888888776432
Q ss_pred -hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHh-chhh-hhhhH--HHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q 000098 2107 -EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-SKLY-LVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2107 -~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~-~~~~-~~~y~--~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
....+.++......+.+++.-+|+-++.++|.+... .... +..|+ +.-+..++.+|.|+...++-.|...+--++
T Consensus 203 l~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 203 LSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 145678888889999999999999999999999753 2211 23343 567888899999999999999999998887
Q ss_pred ccCCCCchhchHHHHHHHHhhhhhh
Q 000098 2182 ASVPKEVQPSYIKVIRDAISTSRDK 2206 (2256)
Q Consensus 2182 ~~l~~e~l~~lv~~l~~~l~~~~d~ 2206 (2256)
.. |.. .+++.+.|...++.
T Consensus 283 AN-p~K-----~~~I~~iL~~Nr~k 301 (335)
T PF08569_consen 283 AN-PNK-----PPPIVDILIKNREK 301 (335)
T ss_dssp H--SS------BHHHHHHHHHTHHH
T ss_pred hC-CCC-----ChHHHHHHHHHHHH
Confidence 54 332 35666666666654
No 280
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.00 E-value=1.3e+02 Score=32.52 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=69.5
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCC------CChHHHHHHHHHHH
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALS 2178 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D------~d~~Vr~~A~~aL~ 2178 (2256)
+.+....+..+...+++.++.+-.-|+.++-.+.+++|..+-..+ ..++..|++++.+ .+..|++.....+-
T Consensus 33 ~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 33 PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 456777788888899999999999999999999999988775433 4577778888753 56899999999998
Q ss_pred HhhccCCCCchhchHHHHHHHHh
Q 000098 2179 RVVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2179 ~l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+...++.+ |. +...+..|.
T Consensus 113 ~W~~~f~~~--p~-~~~~Y~~Lk 132 (139)
T cd03567 113 SWTLELPHE--PK-IKEAYDMLK 132 (139)
T ss_pred HHHHHhccc--ch-HHHHHHHHH
Confidence 888776643 22 344454444
No 281
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=56.13 E-value=68 Score=34.62 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=54.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHH
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2256)
++-..+..+|.+.+++|+..|..|+-.+- +|++...-+.|...+.|. ..|+.+..+....-...+...+-+.++
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k----~~~l~pY~d~L~~Lldd~--~frdeL~~f~~~~~~~~I~~ehR~~l~ 90 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK----DPYLTPYKDNLENLLDDK--TFRDELTTFNLSDESSVIEEEHRPELM 90 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHcCcc--hHHHHHHhhcccCCcCCCCHHHHhHHH
Confidence 45556778899999999999999998763 456655556666666653 345444444322222235566778889
Q ss_pred HHHHHhh
Q 000098 1579 PIVHRGL 1585 (2256)
Q Consensus 1579 p~L~~~L 1585 (2256)
|++.+.+
T Consensus 91 pvvlRIL 97 (141)
T PF07539_consen 91 PVVLRIL 97 (141)
T ss_pred HHHHHHH
Confidence 9888866
No 282
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.72 E-value=7.5e+02 Score=34.42 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=107.9
Q ss_pred hhhhhHHHHHhhcCCC-----HHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHH
Q 000098 1617 IGLLLPEVKKVLVDPI-----PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD----NSNVERSGAAQGLSEVLA 1687 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d~~-----~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~----~~~~~R~~aa~~L~~i~~ 1687 (2256)
++.+...+-+++.|.+ +..-+++.-++..+++.+|.. ...-+|.++++..+- .+...-..+...+|..+.
T Consensus 460 l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t-~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~ 538 (982)
T KOG2022|consen 460 LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET-ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSN 538 (982)
T ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc-hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHH
Confidence 4456666666666554 777788889999999999876 345678888776542 233333444566777777
Q ss_pred HhcHh--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q 000098 1688 ALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHV 1763 (2256)
Q Consensus 1688 ~~g~~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~--~~~VR~~Al~al~~ 1763 (2256)
-++.. ++.+.+|.+++.+..+. .-..+...+..+|+....++.||.+.++..+...+... .+..|...+++++-
T Consensus 539 ~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGy 616 (982)
T KOG2022|consen 539 WLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGY 616 (982)
T ss_pred HHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHH
Confidence 77665 77899999999986433 33344556888999999999999999998887777643 35678888888887
Q ss_pred HHHHhhc
Q 000098 1764 LVEHYAT 1770 (2256)
Q Consensus 1764 iv~~~~~ 1770 (2256)
++....+
T Consensus 617 vls~~~p 623 (982)
T KOG2022|consen 617 VLSRLKP 623 (982)
T ss_pred HHHhccH
Confidence 7766553
No 283
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=55.59 E-value=1.7e+02 Score=40.51 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=75.3
Q ss_pred hcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH-HHHHHHHHHHc-CCCChHHHHHHHHHHHHhh
Q 000098 2104 VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA-PNMISTLIVLL-SDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2104 ~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~-~~il~~L~~~l-~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
.+.+++-..|+..|-..+.. +..|..++.++|.|+..-+..+.... ..++..|+++| .|.+..+...|..+|..++
T Consensus 62 ~~~~P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 62 GVQEPHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred hcCCccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 34455567788888887775 56899999999999986554433222 35677777766 4889999999999999999
Q ss_pred ccCCCCchhchHHHHHHHHhhhhhhhh
Q 000098 2182 ASVPKEVQPSYIKVIRDAISTSRDKER 2208 (2256)
Q Consensus 2182 ~~l~~e~l~~lv~~l~~~l~~~~d~~r 2208 (2256)
..+|.. +..+++.+.........+.+
T Consensus 140 P~ip~~-l~~~L~~Lf~If~Rl~~W~~ 165 (668)
T PF04388_consen 140 PHIPSS-LGPHLPDLFNIFGRLLSWER 165 (668)
T ss_pred ccccch-hhHHHHHHHHHHHHHHHccc
Confidence 999854 67777777766665554443
No 284
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=55.48 E-value=68 Score=33.59 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=50.8
Q ss_pred hcHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccC
Q 000098 2108 EGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2108 ~~~~~ll~~Ll~~l~-~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
+.+..++|.+..+++ +..++.|.+++-.++.++...+..- +.+..++..+.+.....+. .+.+..|+..+....
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-EVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 456788999999998 6678999999999999998654321 1223344444443333333 577888899888665
No 285
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=55.05 E-value=6.8e+02 Score=33.71 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=60.9
Q ss_pred HHHHHHHhhcchhcHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHHHhc-hhhhh-hhHHHHHHHHHHHcCCCChHHHHH
Q 000098 2096 EAAETVTLVIDEEGVESLVSELLKGVGDN-QASIRRSSAYLIGYFYKNS-KLYLV-DEAPNMISTLIVLLSDSDSTTVAA 2172 (2256)
Q Consensus 2096 ~al~~l~~~~~~~~~~~ll~~Ll~~l~~~-~~~vR~~A~~~l~~l~~~~-~~~~~-~y~~~il~~L~~~l~D~d~~Vr~~ 2172 (2256)
..++.+...++.+.+..++..+...+++. ...+|-+.+..++.+.+.. +.+.. +..+.+..-+-.+|.|++.-++..
T Consensus 463 ~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ 542 (559)
T PF14868_consen 463 SLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQH 542 (559)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHH
Confidence 33444444445566777777777777544 3458888888888886532 22222 233444433445779999999999
Q ss_pred HHHHHHHhhccCCCC
Q 000098 2173 AWEALSRVVASVPKE 2187 (2256)
Q Consensus 2173 A~~aL~~l~~~l~~e 2187 (2256)
|.+|++.++...+.+
T Consensus 543 ALeAF~~FAe~T~~e 557 (559)
T PF14868_consen 543 ALEAFGQFAERTSHE 557 (559)
T ss_pred HHHHHHHHhccCCcc
Confidence 999999998877654
No 286
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=54.61 E-value=54 Score=32.55 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCcCc---hHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 000098 1630 DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSD-NSNVERSGAAQGLSEV 1685 (2256)
Q Consensus 1630 d~~~~VR~~a~~aL~~L~~~~g~~~---~~~lip~Ll~~L~~~-~~~~~R~~aa~~L~~i 1685 (2256)
+.+|.+|+.|++.++.++..++..+ .+.+...+.+.+.+. .....+-||..++..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998663 345666666666643 3445777888887765
No 287
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=54.22 E-value=3.5e+02 Score=37.39 Aligned_cols=72 Identities=6% Similarity=0.153 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hh---HHhHHHHHHhhhCC
Q 000098 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PE---IASLVPTLLMGLTD 1548 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~---i~~lv~~Ll~~l~d 1548 (2256)
-++++...+.-.|.+++..+...++..+..+|.+..++++..++.++-.|+..-.+ ++ ++.+++.+.+....
T Consensus 75 Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he 151 (819)
T KOG1877|consen 75 IAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHE 151 (819)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhc
Confidence 37788888888888888767778888888899999999999999999999966543 22 36667766665543
No 288
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=53.50 E-value=8.4e+02 Score=34.36 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=68.1
Q ss_pred CccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcc--hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhch
Q 000098 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2256)
Q Consensus 2067 ~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~--~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~ 2144 (2256)
....+.+.++..+...+..++...-..++.++..+..... ....+.-++.-.....+.-...+......++.+.....
T Consensus 434 ~~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~ 513 (727)
T PF12726_consen 434 AVSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDP 513 (727)
T ss_pred cchhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3345778888888888888887777777777777766321 11100000000000000001233344445555544333
Q ss_pred hhhhhhH--HHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCC
Q 000098 2145 LYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2145 ~~~~~y~--~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
.++...+ +.....++.++-.++.+++++|.+-+.......+
T Consensus 514 ~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 514 SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 3333332 2566788888889999999999999988875433
No 289
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=52.37 E-value=7.4e+02 Score=33.37 Aligned_cols=220 Identities=16% Similarity=0.147 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCc----hHHHHHHHHHHHh----cC------CCHHHHHHHHHHHHH
Q 000098 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE----APTLVSRLLDQLM----KS------DKYGERRGAAFGLAG 1364 (2256)
Q Consensus 1299 ~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~----~~~~l~~Ll~~L~----~~------~~~~vR~~Aa~~L~~ 1364 (2256)
+.+++-+...+++.+..++-.++..+.......+-. +-++++-+.+.+. +. .+.-+..++..-++
T Consensus 245 ~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a- 323 (993)
T COG5234 245 EVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA- 323 (993)
T ss_pred HHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-
Confidence 344455555566667788887888777766655332 2233332222211 11 12335566655555
Q ss_pred HHhhhCcccchhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhccCchHhHHH-HHHHHHH-HcCCCcHH
Q 000098 1365 VVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGRLFEPYVIQ-MLPLLLV-AFSDQVVA 1435 (2256)
Q Consensus 1365 lv~~~g~~~~~~~~il~~L~~~l~-------~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~-llp~ll~-~l~D~~~~ 1435 (2256)
++...+.+..+. -+.+.+.+.+. .-+....|+.+++.+-.+-...++.+.+-+.. +...++. .+-|++-.
T Consensus 324 la~~~~id~~d~-~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~ 402 (993)
T COG5234 324 LAGAGLIDYSDC-LILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELN 402 (993)
T ss_pred Hhhccccchhhh-hhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhh
Confidence 555444444321 13333333221 12234677777776666555533333333433 3334444 67899999
Q ss_pred HHHHHHHHHHHHHhh-hhHhhHHhHHHHHHHhccCCChh--HHHHHHH-HHHHHHhhChhhHhhhhhhHHHH-HHHhhcC
Q 000098 1436 VREAAECAARAMMSQ-LSAQGVKLVLPSLLKGLEDKAWR--TKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPK-LTEVLTD 1510 (2256)
Q Consensus 1436 VR~aa~~al~~l~~~-l~~~~v~~ilp~Ll~~L~~~~w~--~R~~a~~-~Lg~la~~~p~~l~~~L~~Ivp~-L~~~L~D 1510 (2256)
+|.+|..++-..... .+-..-...+.. -+|. .|...|. .+.......| .+..+- .++.. |++-|.+
T Consensus 403 vRr~a~Aal~E~iGR~~s~a~g~~lIsl-------IN~~sv~r~s~csg~~~r~~~~~~-k~~~Ce-dVF~diLl~Nl~H 473 (993)
T COG5234 403 VRRAATAALFEVIGRHASIADGLSLISL-------INYVSVTRISNCSGDLCRKVAHFP-KFRSCE-DVFQDILLTNLQH 473 (993)
T ss_pred hhhHHHHHHHHHhccCCCcccchhhhhh-------ccceecchhhhcchHHHHHhcCcc-ccchHH-HHHHHHHHhhhhc
Confidence 999998777655433 221000111111 1333 2222221 1122222223 222222 33332 5555666
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 000098 1511 THPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~ 1529 (2256)
-+++|+.....+|.++.+.
T Consensus 474 ~~~~~k~~~~y~l~~liK~ 492 (993)
T COG5234 474 WDVKVKQLSAYSLRQLIKY 492 (993)
T ss_pred cchhhhhhccccHHHHhcC
Confidence 6788988888888888653
No 290
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=51.52 E-value=22 Score=35.01 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
..|++++..|+++....|-.+-..+|.++..|....+| ...|+..+-.+|..|-+.-.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 56899999999999999988888999999988888887 567999999999998765443
No 291
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=50.97 E-value=3.6e+02 Score=30.77 Aligned_cols=70 Identities=27% Similarity=0.209 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc
Q 000098 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2256)
Q Consensus 1846 l~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2256)
+..+.....+.+..+|..|+.+++.+....=-.-...+|.++. ...|+++.+|..|...+..+.++.+.-
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIA----L~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIA----LETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhh----hhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 3344445566778899999999988876432223356666554 447899999999999999999887654
No 292
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=50.70 E-value=1.2e+02 Score=33.29 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCC-------CChhhHHHHHH-HHHHHHHhchhhhhhhHHHHHHHHHH
Q 000098 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD-------NQASIRRSSAY-LIGYFYKNSKLYLVDEAPNMISTLIV 2160 (2256)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~-------~~~~vR~~A~~-~l~~l~~~~~~~~~~y~~~il~~L~~ 2160 (2256)
.+-..+.+|+-.++....+....++.-.+.+|... .....|..+.+ .+..+++..+.-+.||...++.....
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888878888899999999999853 22444555554 66678888888889999888888887
Q ss_pred HcCCCC----------hHHHHHHHHHHHH
Q 000098 2161 LLSDSD----------STTVAAAWEALSR 2179 (2256)
Q Consensus 2161 ~l~D~d----------~~Vr~~A~~aL~~ 2179 (2256)
.|+..+ ..++.....+|..
T Consensus 116 ~L~~~~~~~~~~~~~~~~L~~~vL~~L~~ 144 (153)
T PF08146_consen 116 LLKQFNSSKTESKSKSWELWRLVLSTLQK 144 (153)
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 775332 3555555555544
No 293
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=50.39 E-value=19 Score=29.06 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.6
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
..+|.+++++.+.+++++..++++|.+++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46788888898889999999999999886
No 294
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.85 E-value=5.7e+02 Score=31.35 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchh----hcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccC
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK----YGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~----~~il~~L~~~l-~~~~~~~~Re~al~al~~L~~~l~~~ 1413 (2256)
+..++..+.++.+...|..+-+++..+-...|.+..+. ....+.+...+ ...++|.+-+.++.++..++-..++.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 44556666665667777677777776666666655541 12333333332 33345555555555554444332221
Q ss_pred chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1414 ~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
-...+. .-.-+.+.+++++ .| ..-.+.+.+|+.+..|+....++-
T Consensus 365 sa~~ie--------------~G~a~~avqAmka----hP-----------------~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 365 SAKAIE--------------AGAADLAVQAMKA----HP-----------------VAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHHh--------------cchHHHHHHHHHh----Cc-----------------HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 110000 0000112222211 11 122355678889998887765554
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
...+..=+..|+..-...|+.++.+|-.+|..++-.
T Consensus 410 ~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 410 TILLANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred chHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 445555566777777788999999999999988743
No 295
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=48.62 E-value=46 Score=34.54 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000098 1333 DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408 (2256)
Q Consensus 1333 ~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~--~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~ 1408 (2256)
++--+++..|+..|..+.+..+---|+.-|+.+++..+. ..+.....-..+++.+.++ |+.+|..|+.++..+..
T Consensus 39 ~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 39 ENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp SGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 334456666666665555566666778888888887632 1222334555666667765 89999999998877653
No 296
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=47.83 E-value=1.1e+02 Score=31.01 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCC
Q 000098 282 LSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNP---DALEAMFYAIKAVIGGS 339 (2256)
Q Consensus 282 ls~~~~~l~~~~~s~lkS~~~~~R~~a~~~~~~l~~~~~d~---~~~~~~~~~i~~~l~~~ 339 (2256)
+..++..++--+.+.+-+-.+.||..|+.++..|...|.+. ....+++++.++.++..
T Consensus 5 l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 44566778889999999999999999999999999998776 34558999999998874
No 297
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=47.62 E-value=2.3e+02 Score=30.53 Aligned_cols=91 Identities=13% Similarity=0.190 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCC-C-HH--
Q 000098 1679 AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADE-N-ES-- 1752 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~-~-~~-- 1752 (2256)
...+++.+..- .......+..|.+.+.+.++.+...++.++..+....|..|...+ ..++..+...+.+. . +.
T Consensus 26 ~l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~ 104 (140)
T PF00790_consen 26 ILEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETP 104 (140)
T ss_dssp HHHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSH
T ss_pred HHHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhH
Confidence 33455555443 334566777788889999999999999999999999999886554 34666666655433 2 22
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 000098 1753 VRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1753 VR~~Al~al~~iv~~~~~ 1770 (2256)
||+.++..+......|..
T Consensus 105 Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 105 VKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 888888887777776643
No 298
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=47.07 E-value=2.7e+02 Score=30.05 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=56.7
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHH
Q 000098 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d------~~~~VR~~Al~al~~iv~ 1766 (2256)
...+..+.+.++++++.+...++.++..+.+..|..|...+ ..++..+.+.+.. .++.|+.-.+..+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45566677888899999999999999999999999886544 2466666666642 467888888777776666
Q ss_pred Hhh
Q 000098 1767 HYA 1769 (2256)
Q Consensus 1767 ~~~ 1769 (2256)
.|.
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 554
No 299
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=46.68 E-value=2.8e+02 Score=29.58 Aligned_cols=90 Identities=14% Similarity=-0.004 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhc-----HHHHHHHHHhhcCC---CC
Q 000098 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGD---NQ 2125 (2256)
Q Consensus 2054 ~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~-----~~~ll~~Ll~~l~~---~~ 2125 (2256)
...+-.++...... ..-....+..|.+.+.++++.++..++..++.++..++... -..++..|...+.. .+
T Consensus 18 ~~~il~icd~I~~~-~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~ 96 (133)
T cd03561 18 WALNLELCDLINLK-PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYD 96 (133)
T ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCC
Confidence 44444444444322 22335567777888888899999999999999999887522 23566677777764 35
Q ss_pred hhhHHHHHHHHHHHHHhch
Q 000098 2126 ASIRRSSAYLIGYFYKNSK 2144 (2256)
Q Consensus 2126 ~~vR~~A~~~l~~l~~~~~ 2144 (2256)
+.+|.-++..+..+....+
T Consensus 97 ~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 97 PKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7899999999888876544
No 300
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.89 E-value=1.4e+03 Score=34.17 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccc
Q 000098 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1920 (2256)
Q Consensus 1844 ~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~ 1920 (2256)
.....++....|.....|-.|+...+.++...++....++|+++|.+.+.+.+.+.++-..+...+..+=+.+|+.+
T Consensus 1541 pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l 1617 (1621)
T KOG1837|consen 1541 PLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPL 1617 (1621)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhh
Confidence 33444444445667788999999999999999999999999999999999988888777766666666666666643
No 301
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=42.47 E-value=3.4e+02 Score=29.00 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhh
Q 000098 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADE--NESVRDAALGAGHVLVEHYA 1769 (2256)
Q Consensus 1694 l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~--~~~VR~~Al~al~~iv~~~~ 1769 (2256)
-...+..+.+.+.++++.+...++..+..+....|..|...+ ..++..+...+.+. .+.|+..++..+......|.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 355666778888899999999999999999999999886554 34677777777654 23488888877777666664
Q ss_pred c
Q 000098 1770 T 1770 (2256)
Q Consensus 1770 ~ 1770 (2256)
.
T Consensus 115 ~ 115 (133)
T smart00288 115 N 115 (133)
T ss_pred C
Confidence 3
No 302
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.67 E-value=7.4e+02 Score=30.28 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=62.6
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--hccchhch
Q 000098 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY--ATTSLPLL 1776 (2256)
Q Consensus 1699 ~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~--~~~~~~~l 1776 (2256)
..+...+.+.+|.||..++.-+..+....+..|..|-...++.+.+.+.+..+ .+ .|..|+..+.+.- ....++.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~-~a~~alVnlsq~~~l~~~ll~~~ 83 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AE-PAATALVNLSQKEELRKKLLQDL 83 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-cc-HHHHHHHHHHhhHHHHHHHHHHH
Confidence 35667778889999999887666555554556666777888889999888766 22 2333333332211 11112225
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1777 LPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1777 lp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
+..+...+.|+.|..-...+.++..+
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NL 109 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNL 109 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHh
Confidence 55566666777777666666666555
No 303
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=41.35 E-value=1.2e+03 Score=32.68 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.2
Q ss_pred cCCcHHHHHHHHHHHHHHHhcChh
Q 000098 1854 SDVSLSVRQAALHVWKTIVANTPK 1877 (2256)
Q Consensus 1854 ~D~~~~Vr~aA~~~l~~l~~~~~~ 1877 (2256)
-|.+..||..+.+.+..++.+|..
T Consensus 483 L~~~~qvr~l~~~~l~N~a~~C~t 506 (1697)
T KOG3687|consen 483 LDKDHQVRKLATQLLVNLAEGCHT 506 (1697)
T ss_pred ccchhHHHHHHHHHHHHHHhhcch
Confidence 355677888888888888887754
No 304
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=41.15 E-value=3.1e+02 Score=29.73 Aligned_cols=96 Identities=10% Similarity=0.096 Sum_probs=68.8
Q ss_pred chhcHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHH-HHHHcCC---CChHHHHHHHHHHH
Q 000098 2106 DEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST-LIVLLSD---SDSTTVAAAWEALS 2178 (2256)
Q Consensus 2106 ~~~~~~~ll~~Ll~~l~-~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~-L~~~l~D---~d~~Vr~~A~~aL~ 2178 (2256)
++.+....+..|...+. +.++.+-.-|+.++-.+.+++|..+-..+ ..++.. |.+.+.+ .+..|++.+..-+-
T Consensus 32 ~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~ 111 (141)
T cd03565 32 TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQ 111 (141)
T ss_pred CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHH
Confidence 34567777888888887 46788888899999999999998765543 356666 7777763 34689999999998
Q ss_pred HhhccCCCCchhchHHHHHHHHh
Q 000098 2179 RVVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2179 ~l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+....+.+.--..+..+++.|.
T Consensus 112 ~W~~~f~~~~~l~~i~~~y~~L~ 134 (141)
T cd03565 112 AWADAFRGSPDLTGVVEVYEELK 134 (141)
T ss_pred HHHHHhCCCccchHHHHHHHHHH
Confidence 88877765432234555555554
No 305
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=40.94 E-value=1.5e+03 Score=33.68 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000098 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVR 1914 (2256)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~-Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~ 1914 (2256)
...|..|+..+...+..+-..++.++-.+....|+.-+-+... -+..+...+.+.+..+-+.++.+|..+..
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 3455666666555555555666666666776666543322221 23444455567777777777777777764
No 306
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=40.30 E-value=8.9e+02 Score=30.80 Aligned_cols=101 Identities=15% Similarity=0.277 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhc--CCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhccCCC
Q 000098 2110 VESLVSELLKGV--GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPK 2186 (2256)
Q Consensus 2110 ~~~ll~~Ll~~l--~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~-D~d~~Vr~~A~~aL~~l~~~l~~ 2186 (2256)
++.++|.+++++ -++.+.+|..|.+.+..+.+.+...-+......+...+..+- +--..--.....-|..++ .+.+
T Consensus 254 ~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA-~l~p 332 (373)
T PF14911_consen 254 LRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVA-ELDP 332 (373)
T ss_pred HHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HhCH
Confidence 345556666654 355788899999999888876653222222222222222221 111111112223333332 2344
Q ss_pred CchhchHHHHHHHHhhhhhhhhhhccCC
Q 000098 2187 EVQPSYIKVIRDAISTSRDKERRKKKGG 2214 (2256)
Q Consensus 2187 e~l~~lv~~l~~~l~~~~d~~r~~~~g~ 2214 (2256)
+....++|.+++.+... |++++.|.
T Consensus 333 ~lV~~Lip~i~q~l~~~---E~kRG~G~ 357 (373)
T PF14911_consen 333 QLVISLIPTIRQSLKDS---ERKRGLGR 357 (373)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhcCCc
Confidence 55667788888776644 55445554
No 307
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=40.28 E-value=1.6e+02 Score=32.51 Aligned_cols=117 Identities=15% Similarity=0.011 Sum_probs=68.3
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh--hhhHHHHHHHhh
Q 000098 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC--LPKIVPKLTEVL 1508 (2256)
Q Consensus 1431 D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~--L~~Ivp~L~~~L 1508 (2256)
...+++|..+.-++..++........+.+-..+-..+.+........++.++..+....|+.-+.. -+++++.+....
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 356778888887887776433333223333333334444333466667777777776666543332 246777777777
Q ss_pred c--CCCHHHHHHHHHHHHHHHhhc--CchhHHhHHHHHHhhhC
Q 000098 1509 T--DTHPKVQSAGQTALQQVGSVI--KNPEIASLVPTLLMGLT 1547 (2256)
Q Consensus 1509 ~--D~~~~VR~aA~~aL~~l~~~i--~~~~i~~lv~~Ll~~l~ 1547 (2256)
. ..+..+..++++.|..-+..- +....+..++.|-+...
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred hcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 7 667888888888887765321 11123555666666663
No 308
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=39.98 E-value=4e+02 Score=28.86 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLA-DENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1694 l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~-d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
-...+..+.+.+.+.++.+...++.++..+.+..|..|...+ ..++..+...+. ..++.|+..++..+......|..
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 345666777888889999999999999999999999875543 345666666555 45678888888777776666654
No 309
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.80 E-value=1.1e+03 Score=31.76 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=61.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~ 1654 (2256)
...+..+.+.++-.++.+|+..=-+++-++- .+|+. .++..|-....|.+.+|-..++-++|.+........
T Consensus 639 eM~lR~f~h~l~yge~~iRravPLal~llsv--SNPq~------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNAR 710 (878)
T KOG2005|consen 639 EMVLRHFGHLLHYGEPHIRRAVPLALGLLSV--SNPQV------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNAR 710 (878)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcc--CCCcc------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHH
Confidence 3455566666766778888887777776663 44322 377888888999999998888888887654332223
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~ 1684 (2256)
+..++..+-..-..+.+.---...+++|..
T Consensus 711 la~mLrqlaSYyyKd~~~Lf~vriAQGL~h 740 (878)
T KOG2005|consen 711 LAQMLRQLASYYYKDSKALFVVRIAQGLVH 740 (878)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 334444443333333332222334555544
No 310
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=39.69 E-value=1.1e+02 Score=31.06 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=49.0
Q ss_pred CcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcC
Q 000098 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD 1669 (2256)
Q Consensus 1611 ~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~ 1669 (2256)
..+.||.+.++..+...|.+-.++||..+.+.+..+.+..++. +...+++.++..+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999999999999999988755 3556777777777653
No 311
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=39.64 E-value=8.5e+02 Score=30.40 Aligned_cols=139 Identities=14% Similarity=0.227 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhcCh---hHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHhhCccc---hhchHHH----H
Q 000098 1860 VRQAALHVWKTIVANTP---KTLKEIMPVLMNTLISSLASSSSERRQ-VAGRALGELVRKLGERV---LPSIIPI----L 1928 (2256)
Q Consensus 1860 Vr~aA~~~l~~l~~~~~---~~l~~~l~~Ll~~L~~~L~~~~~~~R~-~A~~aL~~lv~~~~~~~---l~~llp~----L 1928 (2256)
+|...+..+..++.+.+ .-...++|.+++.++.-.....+..|. ....+++.++++++... .+.++.. .
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 56666677777776554 224456777777555443434444443 35667888888877642 2333222 2
Q ss_pred hhhcCC---CChhhHHhHHHHHHHHHHhhChhhh---HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch
Q 000098 1929 SRGLKD---PSASRRQGVCIGLSEVMASAGKSQL---LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2256)
Q Consensus 1929 ~~~l~d---~~~~vR~~a~~aL~eii~~~~~~~l---~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~ 1998 (2256)
...+.+ .-|+.|..--.-+..+...+-...+ .+....++..+.-++.+.+.+|.+.+..++..+.+.+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 233332 2488888877777777766643221 234567888888889999999999888888887765443
No 312
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.21 E-value=1.4e+03 Score=32.90 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=83.0
Q ss_pred HHhHHHHHHHhc-----cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1456 VKLVLPSLLKGL-----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1456 v~~ilp~Ll~~L-----~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
+..++..++..+ .|-....|..+++.||.++...|..+-.. ..+..+-=.|+|.+..||..+..+|..+.+.-
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~d--sYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~ 357 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSD--SYLKYIGWTLSDKNGTVRLRCLKALIKLYEKD 357 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcc--hHHHHhcceeecCccHHHHHHHHHHHHHHhcc
Confidence 456666666654 47789999999999999999998875331 33344444689999999999999999998751
Q ss_pred C-chhH----HhHHHHHHhhh-CCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1531 K-NPEI----ASLVPTLLMGL-TDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2256)
Q Consensus 1531 ~-~~~i----~~lv~~Ll~~l-~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l 1600 (2256)
. .+.+ ..+-..++... .|-+..||. .+..+........+.... +-.+...+-+.+++++..+...+
T Consensus 358 ~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~d----i~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 358 EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKD----ILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccChhH----HHHHHHHHhccCcchHHHHHHHH
Confidence 1 1122 33333444444 344455553 333333221222222111 22344455566677777766655
No 313
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=38.61 E-value=1.3e+03 Score=32.34 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=68.2
Q ss_pred HHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhh-hhccC-CcHHHHHH--------HHHHHhh-cCCCCCC
Q 000098 1062 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW-IAVHD-PEKSVAEA--------AEDIWDR-YGYDFGT 1130 (2256)
Q Consensus 1062 ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~a~~d-~~~~~~~~--------~~~~w~~-~~~~~~~ 1130 (2256)
.+...+|+++..|+.||++|++.... ++ |...+. +.-.. ++-..|-. -...|++ ++-.+++
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe~q------~g--F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWEKQ------HG--FALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhhcc------cc--HHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 56788999999999999999976422 22 222222 22222 34444433 3458976 4333332
Q ss_pred C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Q 000098 1131 D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSL 1175 (2256)
Q Consensus 1131 ~----~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~ 1175 (2256)
+ + ..++..+-+.+....-..|++++.++. .+|+-|+++++.|...
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~ 131 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSL 131 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhh
Confidence 2 2 667776666666666688899988886 4788888888777765
No 314
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.54 E-value=1.1e+03 Score=34.84 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=64.9
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHH--HHHHHHHHHHHhcC-------CC--CHHH----HHHHHHHHHH
Q 000098 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLA-------DE--NESV----RDAALGAGHV 1763 (2256)
Q Consensus 1699 ~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~--yl~~ilp~Ll~~L~-------d~--~~~V----R~~Al~al~~ 1763 (2256)
..+...+.|..++||.+|++.|-.+-..-|..|.+ +-.-+...++..|. ++ .+.+ -+...-.+..
T Consensus 1000 ~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisg 1079 (1610)
T KOG1848|consen 1000 VHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISG 1079 (1610)
T ss_pred HHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHH
Confidence 34455567788999999999998888877776655 22222223333332 11 1122 2333444555
Q ss_pred HHHHhhcc------------chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1764 LVEHYATT------------SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1764 iv~~~~~~------------~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
|.+.|... .+..++..+.+...+.+.++..+++..+..+++.
T Consensus 1080 Iaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1080 IAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 55544321 2344666666677788888888998888888754
No 315
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.40 E-value=9.9e+02 Score=34.37 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=76.0
Q ss_pred chHhHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh-
Q 000098 1414 FEPYVIQMLPLL-LVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2256)
Q Consensus 1414 ~~pyv~~llp~l-l~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p- 1490 (2256)
++.++..+...+ +....|-.+.+|-.|.+.++..+..+|..-+ ..+|.-+-=.|.|.+-.+|..++.+|..+.+...
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~ 359 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDED 359 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhcccc
Confidence 344444444332 3456899999999999999999998887644 3344333334668899999999999999988732
Q ss_pred -hhHhhhhhhHHHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 000098 1491 -QQLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1491 -~~l~~~L~~Ivp~L~~~L-~D~~~~VR~aA~~aL~~l 1526 (2256)
..+..+...+-..++++. .|-+..||..+...+...
T Consensus 360 ~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 360 KDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred chHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 123333444444555555 677888888877665544
No 316
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=36.93 E-value=2e+02 Score=33.29 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=74.8
Q ss_pred HcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHhhhCcccchhhcHHHHHHHH
Q 000098 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGA-AFGLAGVVKGFGISSLKKYGIAATLREG 1386 (2256)
Q Consensus 1308 ~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~A-a~~L~~lv~~~g~~~~~~~~il~~L~~~ 1386 (2256)
...++..+.+..+...+........ ...++.+-..+..-+.|.+-... ...++.++... ....+.+.+.
T Consensus 59 L~~~~~~E~~~la~~il~~~~~~~~---~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~-------~~~~~~~~~W 128 (213)
T PF08713_consen 59 LWESGYREERYLALLILDKRRKKLT---EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH-------PEALELLEKW 128 (213)
T ss_dssp HHCSSCHHHHHHHHHHHHHCGGG-----HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------GGHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHhHHHhhhhh---HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------HHHHHHHHHH
Confidence 3456666666655554444332221 12233333333344578877666 44445444332 2567788888
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh
Q 000098 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2256)
Q Consensus 1387 l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~ 1452 (2256)
+.+++.|..|-+.... +.... ..+...++..+...+.|++..||.+..+++..+....+
T Consensus 129 ~~s~~~w~rR~~~v~~----~~~~~---~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVML----LRYIR---KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHCSSHHHHHHHHHCT----TTHGG---GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HhCCcHHHHHHHHHHH----HHHHH---hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 8888666666543332 11122 25566778888888899999999999999998876544
No 317
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=35.96 E-value=9.7 Score=46.63 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000098 842 RELLLNEEASIREKVQGV 859 (2256)
Q Consensus 842 ~~~QL~kE~~iR~~v~~~ 859 (2256)
++++++||..+|.+.|+.
T Consensus 561 ~qkr~kkEkk~k~k~qe~ 578 (641)
T KOG3915|consen 561 VQKRLKKEKKAKRKLQEA 578 (641)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788888888777754
No 318
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=35.59 E-value=61 Score=26.96 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHH
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECA 1443 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~a 1443 (2256)
.+...+...+.|+++.||++|.+.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 567777888999999999998764
No 319
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=34.22 E-value=1.3e+03 Score=31.06 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC
Q 000098 1677 GAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2256)
Q Consensus 1677 ~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~ 1747 (2256)
..+..+..++..+....++++=..+++++-+++.-...-++.+|+++++....+.-.+.-..+-.+++.+.
T Consensus 247 ~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp 317 (559)
T PF14868_consen 247 HVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLP 317 (559)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcC
Confidence 34455666666666667777777788888888999999999999999987666554433333334444444
No 320
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=34.08 E-value=8.7e+02 Score=28.89 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=42.9
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhc
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2256)
+++|+++.|.+.++.+...+-. .+++.+ ..+.......+.+ ..+...+...+.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~------------~~~~~i-~~~~~~~~~W~~~--------------~~lK~~Il~~~~ 53 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYP------------LVFRWI-CVNPSDEQLWESM--------------NELKDRILSLWD 53 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHH------------HHHHHH-S--HHHHHHHHHH--------------HHHHHHHHHGGG
T ss_pred CCCCCcHHHHHHHHHHHHHHHH------------HHHHHH-cCCchHHHHHHHH--------------HHHHHHHHHHhc
Confidence 4788999999999888776643 222222 1111111222222 224445666677
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 000098 1587 ERSAETKKKAAQIVGNMCSL 1606 (2256)
Q Consensus 1587 d~~~~vR~~a~~~l~~L~~~ 1606 (2256)
+.++.+|..+..++..+.-.
T Consensus 54 ~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHh
Confidence 77889999988888877654
No 321
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=33.43 E-value=57 Score=26.23 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhh
Q 000098 2154 MISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2154 il~~L~~~l~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
.++.|+.++..++.++++.|+++|..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5778888888889999999999998875
No 322
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.24 E-value=2.6e+02 Score=28.96 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHH--HHHHHHH-----Hc-CCCcHHHHHHHHHHHHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ--MLPLLLV-----AF-SDQVVAVREAAECAARA 1446 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~--llp~ll~-----~l-~D~~~~VR~aa~~al~~ 1446 (2256)
.++..|.+-+.+. +|++.--++..+..+....|..|..++.. ++..++. .. .+.+..||+.+.+.+..
T Consensus 37 ~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 37 EAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 6788888888776 89999999999999999999767665542 2222221 11 24467888877665543
No 323
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=32.49 E-value=5.8e+02 Score=28.24 Aligned_cols=117 Identities=24% Similarity=0.227 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchh--chHHHHhhhcCCCChhhHH
Q 000098 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP--SIIPILSRGLKDPSASRRQ 1941 (2256)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~--~llp~L~~~l~d~~~~vR~ 1941 (2256)
+..++..+.+.-+..-.+++..+.+.++..-.++ . ....++|+.+++...-..++ .-+..+.+.+..-.+++-.
T Consensus 38 G~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~--~--~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~ 113 (158)
T PF14676_consen 38 GIQILLELFKVHEMIRSEILEQLLNRIVTKSSSP--S--SQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAI 113 (158)
T ss_dssp HHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS------HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccc--h--hHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3445555555555555667777777776443321 1 23478999999875433221 1122233333333455555
Q ss_pred hHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000098 1942 GVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2256)
Q Consensus 1942 ~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al 1989 (2256)
+...++-=++... ...-+.++-.+++++-..+.+.|..|..+|
T Consensus 114 ~ll~Al~PLi~~s-----~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 114 GLLRALLPLIKFS-----PSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHTT------HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----HHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 6555554444321 123366888999999999999999998776
No 324
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.17 E-value=2.1e+02 Score=28.08 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=47.9
Q ss_pred HHHHHHhhc-CCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 000098 2113 LVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179 (2256)
Q Consensus 2113 ll~~Ll~~l-~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~ 2179 (2256)
++..+...+ ...+..+|...+.++..+.+..+..+..-.+.++..+-....|.+.++...|..++..
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 344444443 3345778888888888888777777766667778777777788888999998887643
No 325
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.92 E-value=4.6e+02 Score=28.37 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=50.8
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH--HHHHH-HHHHcCC---CcHHHHHHHHHHHHHHHhhh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPL-LLVAFSD---QVVAVREAAECAARAMMSQL 1451 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~--~llp~-ll~~l~D---~~~~VR~aa~~al~~l~~~l 1451 (2256)
+.+..|.+-+...+++++..-|+..+..+.+.+|..|...+. +++.. +...+.+ ....|++.....+......+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 677778777765557887777899999999999977765443 45554 5555442 34578877776666655444
No 326
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=31.88 E-value=3.6e+02 Score=27.88 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHH
Q 000098 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2256)
Q Consensus 1693 ~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~ 1736 (2256)
....++..+.+.+.+++|.+.-.++.++.++.+..|+.|..++.
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~ 77 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVA 77 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 45677888888889999999999999999999999998877654
No 327
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=31.60 E-value=56 Score=24.64 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCC
Q 000098 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2256)
Q Consensus 1472 w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~ 1511 (2256)
|.+|+.++..||.+.. +..++.|.+.++|+
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhcCC
Confidence 6789999999998632 35566777777763
No 328
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=29.38 E-value=2.5e+02 Score=32.11 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=78.8
Q ss_pred HhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch--hcHHHHHHHHHhhcCCCCh--hhHHHHHHHHHHHHHhchhhh
Q 000098 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESLVSELLKGVGDNQA--SIRRSSAYLIGYFYKNSKLYL 2147 (2256)
Q Consensus 2072 l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~--~~~~~ll~~Ll~~l~~~~~--~vR~~A~~~l~~l~~~~~~~~ 2147 (2256)
...++..+++....+-+.+|..|..++..++..... ++++ -.+.|...+..+.. ..-..+...+..+++- .++
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~L--L~~ 81 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKL--LDL 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHH--hcc
Confidence 455666666666666678999999999999943311 1222 12333333332221 1112233334444432 334
Q ss_pred hhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcc--CCCCchhchHHHHHHHHhhh
Q 000098 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS--VPKEVQPSYIKVIRDAISTS 2203 (2256)
Q Consensus 2148 ~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~--l~~e~l~~lv~~l~~~l~~~ 2203 (2256)
..|...++..++-..+...+++.+.|..||...+.. ...+.+..+...+.+.+...
T Consensus 82 ~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~ 139 (193)
T PF12612_consen 82 PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKEN 139 (193)
T ss_pred HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 568888999999999999999999999999998863 33344555555555555544
No 329
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=29.04 E-value=1.3e+03 Score=29.42 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=118.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHH-HH-cCC-CcHHHHHHHHHHHHHHHhhhhH-h
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL-VA-FSD-QVVAVREAAECAARAMMSQLSA-Q 1454 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll-~~-l~D-~~~~VR~aa~~al~~l~~~l~~-~ 1454 (2256)
.++.+...+-++ +..+|.++..++..+...... +.-+..-=++.++ .. -.| ....-|+.|..-.+.++..-.+ .
T Consensus 26 ~~~~i~~~lL~~-~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSD-SKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 444444444444 488898888888777654321 1111110011111 12 223 3456688888888888765221 2
Q ss_pred hH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1455 ~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
.+ ..++..++...++.+-+-|..+++.|.+++-..|+....+ +-+..+.+.+.|...++....+.++-.+...-...
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~--gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAEC--GGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHc--CCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 22 4566677777777888999999999999999999876543 44566677777755555555555555554432111
Q ss_pred -hH--HhHHHHHHhhhCCC--------C--hhHHH---HHHHHHhcccccC--CChhhHhhHHHHHHHhhcCCCHHHHHH
Q 000098 1534 -EI--ASLVPTLLMGLTDP--------N--DHTKY---SLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKK 1595 (2256)
Q Consensus 1534 -~i--~~lv~~Ll~~l~d~--------~--~~vr~---al~~L~~~~~~~~--~~~~~l~~i~p~L~~~L~d~~~~vR~~ 1595 (2256)
++ ..-+..++..+.|. . +..+. ++-.+.. ++..- ...+.. ..+..+...+.-+++++|..
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr-sW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR-SWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh-cCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHH
Confidence 11 11223333333333 1 12222 2323222 11110 000011 23445666777788889988
Q ss_pred HHHHHHHHhh
Q 000098 1596 AAQIVGNMCS 1605 (2256)
Q Consensus 1596 a~~~l~~L~~ 1605 (2256)
...++-.+..
T Consensus 260 Ildll~dllr 269 (371)
T PF14664_consen 260 ILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHC
Confidence 6666666555
No 330
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=27.70 E-value=1.6e+02 Score=37.80 Aligned_cols=132 Identities=9% Similarity=0.050 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcC---chhH-HhHHHHHHhhhCCCChhHH-HHHHHHHh--cccccCCChhhHhhHHHHHHHhhcCCC
Q 000098 1517 SAGQTALQQVGSVIK---NPEI-ASLVPTLLMGLTDPNDHTK-YSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERS 1589 (2256)
Q Consensus 1517 ~aA~~aL~~l~~~i~---~~~i-~~lv~~Ll~~l~d~~~~vr-~al~~L~~--~~~~~~~~~~~l~~i~p~L~~~L~d~~ 1589 (2256)
.+++..|..+.+.+. .... ..++..|++++++|+-.+. .+...++. ..|..-...---..++.++...+..++
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 455666666665431 1111 3567778888888865442 11111221 122221111122346677777777666
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1590 ~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
...|..+...+..+.-.......+.+....-+..+....+||.|.|+..+...+..+.-
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 67776666666555542233334555555667889999999999999999888877654
No 331
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=27.31 E-value=2.7e+02 Score=29.05 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=53.1
Q ss_pred ccHhhHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhc--chhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhc
Q 000098 2070 FHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLVI--DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS 2143 (2256)
Q Consensus 2070 ~~l~~Ilp~Ll~~l~-~~~~~vr~~a~~al~~l~~~~--~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~ 2143 (2256)
.++..++|.+.+.+. ....+.|..+.-.+..+.... .++.++.++..+.......+. ...++.++..+++.-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 367889999999998 677888888888888887754 456677778777776665554 455677777777643
No 332
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=26.60 E-value=1.1e+03 Score=27.50 Aligned_cols=141 Identities=13% Similarity=0.001 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHhccCchHh
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALL-AFECLCEKLGRLFEPY 1417 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~-al~~L~~~l~~~~~py 1417 (2256)
...+...|.+++-.+.|..|..-+....+.... .-++.+...+.+.++|..-..... .++.+. -+
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~------~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~--------~~ 112 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTP------EDLPLLEELITTKSWWDTVDSLAKVVGGILL--------AD 112 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHcCCchHHHHHHHHHHHhHHHH--------hC
Confidence 334444555554445555554444333222211 234455556666556765442211 111111 01
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
-....+.+..-..+++.-+|.+|.-+.-..... .....++..+...+.|+.+-++++.--+|..++...|+....+
T Consensus 113 ~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~f 188 (208)
T cd07064 113 YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK---TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDF 188 (208)
T ss_pred ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 122345566667788888888776543222222 2234555556666778888888887778888777766654433
No 333
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=26.05 E-value=1.3e+02 Score=33.23 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000098 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIA 876 (2256)
Q Consensus 842 ~~~QL~kE~~iR~~v~~~~~~l~~~~~~i~~l~~~ 876 (2256)
.+.+++||.+||++++.+...++...+.|+.+-.+
T Consensus 11 ~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~ 45 (226)
T KOG3067|consen 11 LQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQN 45 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56689999999999999999999999888887643
No 334
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=24.79 E-value=7.2e+02 Score=28.44 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=72.3
Q ss_pred HhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH--hhHHhHHHHHHHhccC-----CChhHHHHHHHHHHHHHhh
Q 000098 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYC 1488 (2256)
Q Consensus 1416 pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~--~~v~~ilp~Ll~~L~~-----~~w~~R~~a~~~Lg~la~~ 1488 (2256)
.++.+++..++....+.-+.||..|..++..+.....+ ..++ -.+.+.+.+.. .+|..-......+..+...
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhcc
Confidence 34566777777777777889999999999998833212 1111 12333333321 2376555544444433221
Q ss_pred ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc--CchhHHhHHHHHHhhhCCC
Q 000098 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI--KNPEIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1489 ~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i--~~~~i~~lv~~Ll~~l~d~ 1549 (2256)
| .+...++.-++-........+.+.+..+|-.+.... ....+..++..++..+.+.
T Consensus 82 -~----~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~ 139 (193)
T PF12612_consen 82 -P----EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKEN 139 (193)
T ss_pred -H----HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 1 222344444444455666777888888888877632 2224466666666666543
No 335
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.75 E-value=1.4e+03 Score=28.28 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=81.3
Q ss_pred hHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcCchH------HHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1621 LPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFP------DLVSWLLDALKS-DNSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1621 l~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~~~~------~lip~Ll~~L~~-~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
+..++.++.| ....+|..+-.++..+..-.|.+... ...+.+...+.. ..++.+...+...++.++-.....
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 3456666666 55667767767777666655655221 122333333222 234445555656666555433322
Q ss_pred ---HHH-HHHHHHHHhcc-CC-CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1693 ---YFE-HILPDIIRNCS-HQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1693 ---~l~-~ll~~ll~~l~-~~-~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
.++ ..-...++.+. +| ...|...+++++..+.......-.+.+..-+..++......++..+..+..|++.+
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 111 11122233332 33 56788889999998887655554566666666666666666777888777777654
No 336
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=24.59 E-value=2.2e+03 Score=30.65 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=54.3
Q ss_pred cHhhHHHHHHHhhCCCCH--HHHHHHHHHHHHHHhhcch--hcHHH--HHHHHHhhcCCCChhhHHHHHHHHHHHHHhch
Q 000098 2071 HLGTILPALLSAMGDDDM--DVQSLAKEAAETVTLVIDE--EGVES--LVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2256)
Q Consensus 2071 ~l~~Ilp~Ll~~l~~~~~--~vr~~a~~al~~l~~~~~~--~~~~~--ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~ 2144 (2256)
|+..++..++..+..+++ ..-.....|+-.++.+.+. +.+.. .+|.+...+...+...-.+|+..+..+.++..
T Consensus 2000 FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~ 2079 (2235)
T KOG1789|consen 2000 FLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF 2079 (2235)
T ss_pred HHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH
Confidence 556666667777654432 2223333444444443321 22222 36666666665555555778888887766421
Q ss_pred hhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccC
Q 000098 2145 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2145 ~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
-.-.-..-..+.++++.|...- +..--|++|+.++.++-
T Consensus 2080 C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~ 2118 (2235)
T KOG1789|consen 2080 CCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRN 2118 (2235)
T ss_pred HHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHh
Confidence 1000000111223333333222 23337778887776643
No 337
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=24.25 E-value=1e+03 Score=31.25 Aligned_cols=80 Identities=21% Similarity=0.278 Sum_probs=56.3
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCC-hhhHHhHH
Q 000098 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS-ASRRQGVC 1944 (2256)
Q Consensus 1866 ~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~-~~vR~~a~ 1944 (2256)
.++..++...|..+.|++|.++..+ .+.++. ..++..-+-.++..-....+.+.+|.|.-.+.|.+ .+.+..+|
T Consensus 184 rvlS~Vye~~P~~i~PhlP~l~~lL----~q~~p~-~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Il 258 (851)
T KOG3723|consen 184 RVLSAVYEKQPQPINPHLPELLALL----SQLEPE-QYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNIL 258 (851)
T ss_pred HHHHHHHhcCCCccCcccHHHHHHh----cCCCHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 4556666777888899999998776 444443 34556666666666566688999999988777664 56777777
Q ss_pred HHHHHH
Q 000098 1945 IGLSEV 1950 (2256)
Q Consensus 1945 ~aL~ei 1950 (2256)
.-++.+
T Consensus 259 k~ia~~ 264 (851)
T KOG3723|consen 259 KEIAVY 264 (851)
T ss_pred HHHHhc
Confidence 765543
No 338
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.23 E-value=9.8e+02 Score=27.10 Aligned_cols=131 Identities=17% Similarity=0.047 Sum_probs=0.0
Q ss_pred hhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHh
Q 000098 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119 (2256)
Q Consensus 2040 li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~ 2119 (2256)
+...+...+......-++..+... .........+..++. .-++.++.......+-.-...-.+.. +.+..
T Consensus 43 l~~~l~~e~~~~~~~lal~~~~~~---~~~~~~~~~~~~~i~--~~~~W~~~D~~~~~~~~~~~~~~~~~-----~~~~~ 112 (197)
T cd06561 43 LAEALWHEEIREAQYLALDLLDKK---ELKEEDLERFEPWIE--YIDNWDLVDSLCANLLGKLLYAEPEL-----DLLEE 112 (197)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHhcCcch-----HHHHH
Q ss_pred hcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCC
Q 000098 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2120 ~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
+..|++.-.|+.++.++..++.. ..+...++..+-..+.|++.-|+.+..++|..+.+..|
T Consensus 113 w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 113 WAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
No 339
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.27 E-value=3.1e+02 Score=26.88 Aligned_cols=67 Identities=7% Similarity=0.031 Sum_probs=44.4
Q ss_pred hHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1458 LVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2256)
Q Consensus 1458 ~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2256)
.++.++...+. ..+-.+|...+.++..+.....+.+..--+.++..+.....|.+..+-..|.+++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34444444433 34556666677777777777777776666777777777777777777777776654
No 340
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=23.26 E-value=4e+02 Score=29.44 Aligned_cols=103 Identities=9% Similarity=0.078 Sum_probs=66.0
Q ss_pred hhhhhHHHHHHHHHHhcCCCCChhhHhhhhhhhhc--cChhhhhhccchhhhHhhhcChHHHHHHHHHhhhcCCCChHHH
Q 000098 208 KCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTH--MSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKY 285 (2256)
Q Consensus 208 ~~k~~~~~~y~k~vl~sK~~~~~~~~~~~~~~~~~--~t~~df~~~ilP~leK~lLRsPE~~l~~~~~l~~~~~~dls~~ 285 (2256)
...+.|++--.+.+++.+..|..+..+.+....+. ++-.|..+.|-..++-...-.++++...+..+++=.++. .-
T Consensus 51 ~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s--~~ 128 (158)
T PF14676_consen 51 MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFS--PS 128 (158)
T ss_dssp GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT---HH
T ss_pred HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--HH
Confidence 34667888888889999998888889988888885 466677888888888877777777666655554433222 22
Q ss_pred H-HHHHHHHhhhhccCCHHHHHHHHHHH
Q 000098 286 A-TEILSVVLSQVRHADEGRKTGALTII 312 (2256)
Q Consensus 286 ~-~~l~~~~~s~lkS~~~~~R~~a~~~~ 312 (2256)
. ..++..+=..+.|.+...|.-|+.-|
T Consensus 129 lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 129 LRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 2 33556666667788888888887654
No 341
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=21.82 E-value=2e+03 Score=29.13 Aligned_cols=147 Identities=14% Similarity=0.237 Sum_probs=75.2
Q ss_pred HHHHHHHhccCC--ChhHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHhh-----cCCCHHHHHHHHHHHHHHHhhc
Q 000098 1459 VLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVL-----TDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1459 ilp~Ll~~L~~~--~w~~R~~a~~~Lg~la~~~p~~l~-~~L~~Ivp~L~~~L-----~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
++..+-..+++. +|..-..-|.++|.+.....+... .++-.++..++.++ +|...-|.......+|+.-..+
T Consensus 482 mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFL 561 (1053)
T COG5101 482 MIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFL 561 (1053)
T ss_pred HHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHH
Confidence 344444555554 555556678888888776655433 34445666655544 3443333333222333322222
Q ss_pred Cc--hhHHhHHHHHHhhhCCCChhHHH-HHHHHHh------cccccC---CChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000098 1531 KN--PEIASLVPTLLMGLTDPNDHTKY-SLDILLQ------TTFVNT---VDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2256)
Q Consensus 1531 ~~--~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~------~~~~~~---~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~ 1598 (2256)
.. ..++.++..|.+.+....+.++. |.+...+ ..|+.. ..+|....++..+...-.|-.+.-+..-.+
T Consensus 562 kahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYe 641 (1053)
T COG5101 562 KAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYE 641 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHH
Confidence 11 23477888888888877777763 6666554 223321 224445455555544444544444433334
Q ss_pred HHHHHhh
Q 000098 1599 IVGNMCS 1605 (2256)
Q Consensus 1599 ~l~~L~~ 1605 (2256)
+.+-+.+
T Consensus 642 Acg~vIs 648 (1053)
T COG5101 642 ACGMVIS 648 (1053)
T ss_pred HHhHHHh
Confidence 4444443
No 342
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.64 E-value=3.7e+02 Score=29.95 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCC--CChHHHH-HHHHHHHhhhhccCCHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHH-hcCC
Q 000098 265 EIILESIGILLKSVN--LDLSKYA-TEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNP--DALEAMFYAIKA-VIGG 338 (2256)
Q Consensus 265 E~~l~~~~~l~~~~~--~dls~~~-~~l~~~~~s~lkS~~~~~R~~a~~~~~~l~~~~~d~--~~~~~~~~~i~~-~l~~ 338 (2256)
|.+|+.-++.+.+.+ -.+-... .++.+.++.++.+++..+=..+++.|..+..+-... .-++-++.++.- ++..
T Consensus 47 ~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~ 126 (168)
T PF12783_consen 47 ESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILES 126 (168)
T ss_pred HHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred CCCcccchHHHhHHHHHHHhhhcCC
Q 000098 339 SEGRLAFPYQRIGMVNALQELSNAT 363 (2256)
Q Consensus 339 ~~gkl~~~~~r~~~~~~l~~l~~~~ 363 (2256)
+.+ +..||..+++++..+...|
T Consensus 127 ~~~---~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 127 DNS---SLWQKELALEILRELCKDP 148 (168)
T ss_pred CCC---cHHHHHHHHHHHHHHHhCh
No 343
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=21.56 E-value=2.1e+03 Score=29.10 Aligned_cols=212 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH----------------------HhHHHHHHHhc-----
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----------------------KLVLPSLLKGL----- 1467 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v----------------------~~ilp~Ll~~L----- 1467 (2256)
...+..++..++..-.++-.-+|..|..++..++..+..... ...+..+...+
T Consensus 205 ss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~~Lc~qa~~lsEKksR~ne~~l~~ln~sl~~d~i~dicdsvfvsRy 284 (740)
T COG5537 205 SSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQKKLCVQAFSLSEKKSRMNELALYDLNPSLIRDEIKDICDSVFVSRY 284 (740)
T ss_pred chHHHHHHHHHHhccCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhhhc
Q ss_pred cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHH
Q 000098 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTL 1542 (2256)
Q Consensus 1468 ~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~L 1542 (2256)
.|.+...|..+++.|+......|+.+.... .+...--+|.|.+..||......+.-++...++ ..++.+...+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q ss_pred HhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhh
Q 000098 1543 LMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2256)
Q Consensus 1543 l~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll 1621 (2256)
++.+.....-+| .++..+.........+......+...+.....+.-...+.....+-.-.++.+.+.....--...++
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~n~lL 442 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKTNRLL 442 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHH
Q ss_pred HHHHHhh
Q 000098 1622 PEVKKVL 1628 (2256)
Q Consensus 1622 ~~L~~~L 1628 (2256)
+.+.+..
T Consensus 443 ~a~~qgs 449 (740)
T COG5537 443 EAMKQGS 449 (740)
T ss_pred HHHHhhh
No 344
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.53 E-value=1.8e+03 Score=28.47 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCC
Q 000098 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP 1935 (2256)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~ 1935 (2256)
+..+.+.+...+++.|......+=.+.=..|-. +...++|.+...+.+.
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc
Confidence 344455567788888888777665544222221 3456678777777543
No 345
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=21.28 E-value=9.4e+02 Score=30.26 Aligned_cols=125 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--H
Q 000098 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--Q 1736 (2256)
Q Consensus 1659 ip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~ 1736 (2256)
+..++....++....+.-..+..+++.+..-. +.-+..+..|++.+++.+++|-..++.+++.+...+|..|..-+ .
T Consensus 9 ~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr 87 (462)
T KOG2199|consen 9 FEQDVEKATDEKNTSENWSLILDVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSR 87 (462)
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhh
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhc
Q 000098 1737 QVLPAILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI 1784 (2256)
Q Consensus 1737 ~ilp~Ll~~L~-d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l 1784 (2256)
.+...+...+. ...+.|++.....+....+.|..+.--.+++.+.+.+
T Consensus 88 ~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~kl 136 (462)
T KOG2199|consen 88 DFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKL 136 (462)
T ss_pred hHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
No 346
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=20.37 E-value=1.5e+02 Score=29.36 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccC
Q 000098 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2127 ~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
..|-+++-+|+.++...+-++-++++.++..|.....| ...+++.+-.||+.+-+.-
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 45788889999999988888888999999998888887 5679999999999986543
No 347
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=20.36 E-value=66 Score=23.82 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhc
Q 000098 1981 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013 (2256)
Q Consensus 1981 VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~ 2013 (2256)
||..|+.+++.+.. ++.+|.|.+.|+
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhc
Confidence 68888888887653 345666666554
No 348
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=20.29 E-value=7.5e+02 Score=29.66 Aligned_cols=139 Identities=15% Similarity=0.086 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCccccH--hhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhH
Q 000098 2052 FNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIR 2129 (2256)
Q Consensus 2052 ~~~~aL~~La~~~g~~l~~~l--~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR 2129 (2256)
....++++|++.-......|+ ..|+|.+++.++..++--+..|.-.+.+|+. ++.|+..+-. .++..
T Consensus 115 tsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~--dd~GL~yiC~---------t~eRf 183 (262)
T PF04078_consen 115 TSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL--DDVGLNYICQ---------TAERF 183 (262)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH--SHHHHHHHTS---------SHHHH
T ss_pred hHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc--chhHHHHHhc---------CHHHH
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHhh
Q 000098 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2256)
Q Consensus 2130 ~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~~ 2202 (2256)
.+....++.+......+.++-+-..+-..+..|.| ++..|++-..++-...+...-...-.--+..++.+..
T Consensus 184 ~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~q 255 (262)
T PF04078_consen 184 FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQCLPDQLRDGTFSNILKDDPSTKRWLQQ 255 (262)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHH
No 349
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=20.00 E-value=3.3e+03 Score=30.96 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=84.7
Q ss_pred HHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhhhCCC-ChhHHHHHHH
Q 000098 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDP-NDHTKYSLDI 1559 (2256)
Q Consensus 1482 Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~l~d~-~~~vr~al~~ 1559 (2256)
+.....+....+..+++.++...-.++..+++.|+.-+......+-..+. .+. ++++..|+..+.+. +..+..|++.
T Consensus 418 l~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~~qqeVv~~Lvthi~sg~~~ev~~aL~v 496 (1426)
T PF14631_consen 418 LDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SYCQQEVVGALVTHIGSGNSQEVDAALDV 496 (1426)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33344444556677888888888888899999999999999988887774 333 67777777776433 3456667777
Q ss_pred HHhcccccCCChhhHhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHH
Q 000098 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638 (2256)
Q Consensus 1560 L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~-~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~ 1638 (2256)
|......+...-...+.++.-+...+.+-+. .+| ....++..++-. +...-....+.+.-.+.+.+..+++..+..
T Consensus 497 L~~L~~~~~~~l~~fa~~l~giLD~l~~Ls~~qiR-~lf~il~~La~~--~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 497 LCELAEKNPSELQPFATFLKGILDYLDNLSLQQIR-KLFDILCTLAFS--DSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HHHHHHH-HHHHHHTHHHHHGGGGGGGG--HHHHH-HHHHHHHHHHHH--HSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcC--CcccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 7652111100000011111112222233333 444 346666666632 222222334455556677777777776654
Q ss_pred HHH
Q 000098 1639 AAR 1641 (2256)
Q Consensus 1639 a~~ 1641 (2256)
..-
T Consensus 574 GII 576 (1426)
T PF14631_consen 574 GII 576 (1426)
T ss_dssp HHH
T ss_pred hHH
Confidence 433
Done!