Query 000098
Match_columns 2256
No_of_seqs 656 out of 3468
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:30:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 9.7E-43 3.3E-47 512.6 75.4 934 1133-2199 9-1055(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 1E-39 3.5E-44 480.4 80.9 1045 1056-2203 5-1156(1230)
3 2bpt_A Importin beta-1 subunit 100.0 6.7E-35 2.3E-39 415.3 76.1 742 1133-1994 7-857 (861)
4 2bpt_A Importin beta-1 subunit 100.0 1.4E-35 4.8E-40 422.3 66.2 746 1055-1916 2-859 (861)
5 4fdd_A Transportin-1; heat rep 100.0 3E-34 1E-38 406.3 70.7 723 1133-1943 16-815 (852)
6 4fdd_A Transportin-1; heat rep 100.0 3.5E-35 1.2E-39 415.7 56.9 687 1057-1771 13-789 (852)
7 1qgr_A Protein (importin beta 100.0 4.7E-33 1.6E-37 397.1 73.6 741 1133-1994 4-871 (876)
8 1qgr_A Protein (importin beta 100.0 1.9E-31 6.3E-36 380.6 79.6 685 1417-2182 87-871 (876)
9 1b3u_A Protein (protein phosph 100.0 4.1E-33 1.4E-37 378.9 52.3 566 1338-1993 11-586 (588)
10 1b3u_A Protein (protein phosph 100.0 4.4E-31 1.5E-35 358.9 51.1 556 1223-1802 17-585 (588)
11 2iw3_A Elongation factor 3A; a 99.9 7.9E-22 2.7E-26 266.3 30.4 311 1337-1652 14-328 (986)
12 2x1g_F Cadmus; transport prote 99.9 8.1E-19 2.8E-23 251.8 55.4 718 1057-1915 7-859 (971)
13 1wa5_C Importin alpha RE-expor 99.9 5.1E-18 1.7E-22 242.2 60.8 729 1057-1976 5-869 (960)
14 2x19_B Importin-13; nuclear tr 99.9 8.4E-18 2.9E-22 241.5 60.4 699 1057-1917 24-849 (963)
15 1ibr_B P95, importin beta-1 su 99.8 1.6E-18 5.3E-23 227.6 36.2 395 1133-1546 4-460 (462)
16 3m1i_C Exportin-1; heat repeat 99.8 1.2E-15 4.2E-20 219.5 58.6 588 1050-1743 9-694 (1049)
17 1ibr_B P95, importin beta-1 su 99.8 9.2E-17 3.1E-21 210.7 36.5 329 1419-1784 89-460 (462)
18 2x1g_F Cadmus; transport prote 99.8 5.4E-14 1.8E-18 201.8 63.6 719 1352-2185 21-909 (971)
19 3now_A UNC-45 protein, SD10334 99.8 3.5E-14 1.2E-18 190.3 55.8 700 1336-2182 5-782 (810)
20 3now_A UNC-45 protein, SD10334 99.8 9.4E-15 3.2E-19 195.8 49.5 673 1117-1873 42-782 (810)
21 2x19_B Importin-13; nuclear tr 99.7 8E-13 2.7E-17 189.7 72.6 655 1421-2182 105-894 (963)
22 4hat_C Exportin-1; heat repeat 99.7 1E-13 3.4E-18 194.3 61.1 590 1048-1746 7-697 (1023)
23 3ibv_A Exportin-T; karyopherin 99.7 2.1E-13 7.1E-18 191.3 60.4 627 1057-1771 6-773 (980)
24 1wa5_C Importin alpha RE-expor 99.7 7.3E-13 2.5E-17 189.1 66.8 638 1426-2164 91-869 (960)
25 2vgl_B AP-2 complex subunit be 99.7 6.3E-14 2.2E-18 188.5 48.2 483 1462-2012 17-510 (591)
26 2vgl_B AP-2 complex subunit be 99.7 1.7E-14 5.6E-19 194.1 41.8 502 1222-1763 19-529 (591)
27 3gjx_A Exportin-1; transport, 99.6 3.1E-11 1.1E-15 167.9 64.3 588 1047-1744 18-721 (1073)
28 2jdq_A Importin alpha-1 subuni 99.6 3.5E-14 1.2E-18 185.5 33.0 393 1501-1993 22-442 (450)
29 2jdq_A Importin alpha-1 subuni 99.6 5.9E-14 2E-18 183.3 34.3 380 1380-1763 22-440 (450)
30 2z6g_A B-catenin; FULL-length, 99.6 7.5E-13 2.6E-17 183.2 44.2 505 1302-1880 117-670 (780)
31 3m1i_C Exportin-1; heat repeat 99.6 1.5E-10 5.3E-15 166.5 68.3 664 1433-2181 113-928 (1049)
32 4b8j_A Importin subunit alpha- 99.6 3E-13 1E-17 180.3 37.2 388 1338-1764 75-494 (528)
33 2z6g_A B-catenin; FULL-length, 99.6 7.2E-13 2.5E-17 183.4 41.9 504 1422-1996 117-665 (780)
34 1wa5_B Importin alpha subunit; 99.6 1.3E-13 4.6E-18 183.7 33.1 381 1420-1803 87-509 (530)
35 4b8j_A Importin subunit alpha- 99.6 4.2E-13 1.5E-17 178.9 35.8 381 1420-1802 74-494 (528)
36 3oc3_A Helicase MOT1, MOT1; re 99.6 8.4E-16 2.9E-20 184.3 6.3 254 1059-1363 176-432 (800)
37 3ibv_A Exportin-T; karyopherin 99.6 6.5E-10 2.2E-14 156.0 66.7 587 1142-1783 20-746 (980)
38 1wa5_B Importin alpha subunit; 99.6 7E-13 2.4E-17 176.8 35.0 389 1576-1993 87-509 (530)
39 4hat_C Exportin-1; heat repeat 99.6 1.8E-09 6.1E-14 151.5 68.1 545 1133-1770 19-622 (1023)
40 2z6h_A Catenin beta-1, beta-ca 99.6 1.4E-11 4.7E-16 168.1 45.9 467 1378-1879 14-533 (644)
41 2z6h_A Catenin beta-1, beta-ca 99.5 3.4E-12 1.2E-16 174.1 39.0 462 1301-1803 15-526 (644)
42 1jdh_A Beta-catenin; beta-cate 99.5 2.7E-12 9.2E-17 171.3 37.2 458 1301-1802 18-528 (529)
43 2qk2_A LP04448P; mini spindles 99.5 2.5E-13 8.6E-18 160.9 22.0 193 1342-1539 20-216 (242)
44 2qk1_A Protein STU2; STU2P, XM 99.5 2.9E-13 1E-17 159.8 22.2 195 1348-1542 26-234 (249)
45 1jdh_A Beta-catenin; beta-cate 99.5 4.3E-12 1.5E-16 169.3 35.0 482 1378-1912 17-528 (529)
46 1w63_A Adapter-related protein 99.5 9E-12 3.1E-16 168.0 38.3 505 1426-1993 40-576 (618)
47 1w63_A Adapter-related protein 99.4 2.3E-10 8E-15 154.2 43.2 476 1332-1873 65-577 (618)
48 3ul1_B Importin subunit alpha- 99.4 2.5E-11 8.7E-16 160.2 32.4 378 1422-1802 59-476 (510)
49 3tpo_A Importin subunit alpha- 99.4 8E-11 2.7E-15 156.4 34.4 379 1421-1802 77-495 (529)
50 3ul1_B Importin subunit alpha- 99.4 9.6E-11 3.3E-15 154.6 34.2 386 1339-1763 59-475 (510)
51 2qk2_A LP04448P; mini spindles 99.4 2.4E-12 8E-17 152.6 16.7 198 1458-1660 15-217 (242)
52 2vgl_A Adaptor protein complex 99.4 2.3E-10 7.8E-15 153.5 37.6 478 1452-1991 68-586 (621)
53 3tpo_A Importin subunit alpha- 99.4 2.8E-10 9.6E-15 151.1 36.8 386 1339-1763 78-494 (529)
54 2qk1_A Protein STU2; STU2P, XM 99.3 3E-11 1E-15 142.6 18.7 199 1462-1662 20-234 (249)
55 2vgl_A Adaptor protein complex 99.3 3.6E-09 1.2E-13 141.9 41.4 491 1332-1912 69-587 (621)
56 3gjx_A Exportin-1; transport, 99.2 7.1E-07 2.4E-11 124.5 60.4 312 1855-2185 490-862 (1073)
57 4ady_A RPN2, 26S proteasome re 99.2 2.8E-06 9.4E-11 114.0 59.9 331 1592-1993 374-718 (963)
58 1oyz_A Hypothetical protein YI 99.2 9.2E-10 3.2E-14 133.4 24.7 247 1380-1678 25-273 (280)
59 3a6p_A Exportin-5; exportin-5, 99.2 3.6E-08 1.2E-12 142.3 44.5 537 1057-1668 11-682 (1204)
60 4ady_A RPN2, 26S proteasome re 99.2 1.1E-05 3.6E-10 108.5 62.9 261 1858-2180 451-717 (963)
61 1oyz_A Hypothetical protein YI 99.1 4.2E-09 1.5E-13 127.6 26.1 211 1302-1549 25-235 (280)
62 3oc3_A Helicase MOT1, MOT1; re 99.0 8.4E-10 2.9E-14 133.3 13.8 252 1338-1644 175-432 (800)
63 2iw3_A Elongation factor 3A; a 99.0 7.8E-09 2.7E-13 140.5 24.3 296 1662-1997 19-327 (986)
64 3ltj_A Alpharep-4; protein eng 98.9 1.4E-08 4.9E-13 116.2 19.0 188 1415-1647 9-197 (201)
65 3ltm_A Alpha-REP4; protein eng 98.9 1.6E-08 5.5E-13 116.8 19.5 184 1420-1648 19-203 (211)
66 3opb_A SWI5-dependent HO expre 98.9 1.2E-05 4.2E-10 105.9 47.1 547 1378-1994 132-728 (778)
67 3a6p_A Exportin-5; exportin-5, 98.9 9.7E-06 3.3E-10 117.1 50.6 140 1855-1998 543-701 (1204)
68 1xm9_A Plakophilin 1; armadill 98.9 7.6E-08 2.6E-12 124.8 25.9 338 1460-1802 4-447 (457)
69 3opb_A SWI5-dependent HO expre 98.9 9.6E-06 3.3E-10 106.8 44.2 477 1122-1648 161-728 (778)
70 3l6x_A Catenin delta-1; cateni 98.9 3.8E-07 1.3E-11 118.7 30.4 344 1458-1803 48-475 (584)
71 3ltm_A Alpha-REP4; protein eng 98.9 8.1E-08 2.8E-12 110.8 20.9 185 1457-1687 18-203 (211)
72 4hxt_A De novo protein OR329; 98.8 9.9E-08 3.4E-12 113.2 22.0 231 1421-1653 3-246 (252)
73 3ltj_A Alpharep-4; protein eng 98.8 1.2E-07 4.1E-12 108.4 21.8 183 1457-1685 13-196 (201)
74 4hxt_A De novo protein OR329; 98.8 1.3E-07 4.5E-12 112.1 22.2 238 1459-1734 3-250 (252)
75 4db8_A Armadillo-repeat protei 98.8 4.4E-08 1.5E-12 116.4 18.0 223 1423-1648 15-251 (252)
76 1xm9_A Plakophilin 1; armadill 98.8 7.6E-07 2.6E-11 115.4 29.2 339 1380-1724 4-448 (457)
77 3l6x_A Catenin delta-1; cateni 98.8 3.6E-06 1.2E-10 109.6 33.6 351 1301-1687 49-476 (584)
78 4db8_A Armadillo-repeat protei 98.7 9.4E-08 3.2E-12 113.6 16.6 225 1302-1528 14-251 (252)
79 3nmz_A APC variant protein; pr 98.7 3.8E-06 1.3E-10 107.1 29.0 315 1378-1729 70-454 (458)
80 3nmz_A APC variant protein; pr 98.6 3E-06 1E-10 108.0 25.8 308 1457-1767 69-451 (458)
81 1vsy_5 Proteasome activator BL 98.6 3.7E-05 1.3E-09 106.6 36.7 670 1413-2185 126-877 (997)
82 4db6_A Armadillo repeat protei 98.6 1.6E-06 5.3E-11 99.8 19.6 190 1421-1648 13-209 (210)
83 4db6_A Armadillo repeat protei 98.5 9.5E-07 3.2E-11 101.6 16.7 187 1341-1528 15-209 (210)
84 2db0_A 253AA long hypothetical 98.5 3.3E-05 1.1E-09 80.7 25.6 202 1338-1554 33-234 (253)
85 2of3_A ZYG-9; multifunctional 98.5 3.3E-06 1.1E-10 98.0 20.8 174 1350-1533 58-241 (266)
86 4ffb_C Protein STU2; tubulin f 98.5 1.3E-06 4.3E-11 105.4 17.4 195 1780-1999 14-217 (278)
87 2db0_A 253AA long hypothetical 98.5 4.1E-05 1.4E-09 79.9 25.3 215 1299-1527 31-245 (253)
88 1vsy_5 Proteasome activator BL 98.4 0.00019 6.4E-09 99.6 38.3 696 1336-2103 132-966 (997)
89 2of3_A ZYG-9; multifunctional 98.3 1.9E-05 6.5E-10 91.7 20.7 183 1462-1654 50-242 (266)
90 1xqr_A HSPBP1 protein; armadil 98.3 4.1E-05 1.4E-09 92.1 22.0 135 1394-1529 55-197 (296)
91 4ffb_C Protein STU2; tubulin f 98.2 1.9E-05 6.5E-10 95.0 18.8 185 1344-1532 16-216 (278)
92 3nmw_A APC variant protein; AR 98.2 4.7E-05 1.6E-09 94.1 21.0 226 1392-1653 97-339 (354)
93 3nmw_A APC variant protein; AR 98.2 4.5E-05 1.5E-09 94.3 20.0 217 1313-1530 97-336 (354)
94 1xqr_A HSPBP1 protein; armadil 98.0 5.4E-05 1.9E-09 91.0 17.1 175 1353-1529 55-239 (296)
95 4gmo_A Putative uncharacterize 97.9 1.4E-06 4.9E-11 118.4 0.2 220 1922-2152 34-270 (684)
96 3b2a_A TON_1937, putative unch 97.9 0.00085 2.9E-08 73.9 20.3 217 1736-1987 32-254 (265)
97 3tjz_B Coatomer subunit gamma; 97.8 8.2E-05 2.8E-09 90.7 13.1 278 1885-2178 68-349 (355)
98 3grl_A General vesicular trans 97.7 0.01 3.6E-07 76.3 30.3 174 1334-1538 18-203 (651)
99 3tjz_B Coatomer subunit gamma; 97.6 0.00076 2.6E-08 82.2 17.5 275 1498-1799 67-348 (355)
100 3b2a_A TON_1937, putative unch 97.6 0.017 5.8E-07 63.9 24.9 218 1420-1643 33-256 (265)
101 1lrv_A LRV, leucine-rich repea 97.5 1.8E-05 6.1E-10 91.7 0.6 139 1425-1644 103-242 (244)
102 1lrv_A LRV, leucine-rich repea 97.4 5.3E-05 1.8E-09 87.7 3.2 185 1506-1800 57-242 (244)
103 1te4_A Conserved protein MTH18 97.4 3.4E-05 1.2E-09 81.1 1.4 117 1419-1560 11-128 (131)
104 4gmo_A Putative uncharacterize 97.2 0.25 8.7E-06 66.8 36.1 148 1378-1529 35-215 (684)
105 1te4_A Conserved protein MTH18 97.1 0.00048 1.6E-08 72.2 6.7 118 1379-1525 13-130 (131)
106 3tt9_A Plakophilin-2; cell adh 96.8 0.011 3.9E-07 67.7 15.0 188 1458-1648 8-229 (233)
107 3l9t_A Putative uncharacterize 96.8 0.012 4.3E-07 65.8 13.9 144 1336-1493 69-213 (240)
108 3l9t_A Putative uncharacterize 96.7 0.016 5.4E-07 65.0 13.8 134 2042-2186 77-211 (240)
109 3grl_A General vesicular trans 96.1 2.1 7.2E-05 55.3 30.7 230 1737-1994 122-394 (651)
110 3u0r_A Apoptosis inhibitor 5; 95.8 1.6 5.3E-05 54.0 26.1 286 1857-2185 41-361 (507)
111 3tt9_A Plakophilin-2; cell adh 95.3 0.2 6.8E-06 57.4 15.0 125 1422-1546 10-144 (233)
112 3u0r_A Apoptosis inhibitor 5; 94.9 4.6 0.00016 49.9 26.0 159 1413-1583 58-222 (507)
113 4atg_A TAF6; transcription, TF 94.1 0.79 2.7E-05 50.3 15.2 87 1864-1950 66-160 (196)
114 4atg_A TAF6; transcription, TF 93.9 1.4 4.9E-05 48.2 16.9 106 1590-1701 60-173 (196)
115 3gs3_A Symplekin, LD45768P; he 92.4 19 0.00065 41.5 28.3 141 1435-1605 30-173 (257)
116 3o2t_A Symplekin; heat repeat, 90.0 27 0.00094 42.6 23.4 141 1437-1606 42-184 (386)
117 1lsh_A Lipovitellin (LV-1N, LV 89.9 6.7 0.00023 55.5 20.8 153 1432-1605 407-576 (1056)
118 1vsy_4 Proteasome activator BL 89.5 18 0.00061 49.0 23.5 297 1456-1765 337-686 (799)
119 1lsh_A Lipovitellin (LV-1N, LV 89.3 25 0.00084 49.7 25.9 149 1358-1524 375-539 (1056)
120 3gs3_A Symplekin, LD45768P; he 88.5 26 0.00089 40.3 20.7 90 1900-1994 30-119 (257)
121 3o2t_A Symplekin; heat repeat, 87.1 63 0.0022 39.4 30.5 89 1901-1994 41-129 (386)
122 1vsy_4 Proteasome activator BL 79.2 1.9E+02 0.0065 39.0 37.0 115 1613-1727 333-457 (799)
123 3ldz_A STAM-1, signal transduc 72.8 20 0.00068 37.2 10.9 95 2107-2201 37-133 (140)
124 1x5b_A Signal transducing adap 69.6 24 0.00081 37.7 10.9 95 2107-2201 47-144 (163)
125 1w9c_A CRM1 protein, exportin 64.5 1.2E+02 0.0042 35.8 16.4 115 1417-1531 70-199 (321)
126 2b6c_A Hypothetical protein EF 62.4 72 0.0025 35.8 13.8 139 1341-1495 58-196 (220)
127 1upk_A MO25 protein; transfera 62.1 2.5E+02 0.0086 33.3 26.5 182 1338-1528 79-283 (341)
128 1upk_A MO25 protein; transfera 62.0 2.5E+02 0.0087 33.2 23.2 204 1964-2206 77-301 (341)
129 3g2s_A C-terminal fragment of 59.7 77 0.0026 33.1 12.2 91 2108-2201 44-142 (149)
130 1mhq_A ADP-ribosylation factor 59.2 96 0.0033 32.3 12.9 91 2108-2201 34-132 (148)
131 3s4w_B Protein FACD2, fanconi 55.3 6.4E+02 0.022 35.8 25.9 117 2065-2182 391-507 (1323)
132 1mhq_A ADP-ribosylation factor 52.4 1.5E+02 0.0052 30.8 13.1 89 1681-1770 24-120 (148)
133 1juq_A ADP-ribosylation factor 51.6 1.1E+02 0.0039 32.6 12.3 91 2108-2201 46-144 (171)
134 1elk_A Target of MYB1; superhe 49.3 1.1E+02 0.0037 32.3 11.5 95 2107-2201 48-149 (157)
135 1w9c_A CRM1 protein, exportin 48.7 1.3E+02 0.0043 35.7 13.0 114 2053-2166 94-228 (321)
136 1vdy_A Hypothetical protein (R 48.1 58 0.002 33.5 8.7 74 1691-1764 44-128 (140)
137 1x5b_A Signal transducing adap 45.3 1.4E+02 0.0047 31.7 11.6 89 1681-1770 38-129 (163)
138 3ldz_A STAM-1, signal transduc 43.9 1.1E+02 0.0037 31.6 10.3 77 1694-1770 40-118 (140)
139 3g2s_A C-terminal fragment of 43.9 1.6E+02 0.0055 30.6 11.6 77 1694-1770 46-130 (149)
140 3zyq_A Hepatocyte growth facto 38.9 1.4E+02 0.0049 33.5 11.2 95 2107-2201 40-137 (226)
141 3ut4_A CTHE_2751, putative unc 37.4 1.9E+02 0.0065 29.4 10.3 87 1450-1550 23-109 (134)
142 3fga_B Serine/threonine-protei 37.3 6.5E+02 0.022 30.7 24.5 252 1469-1726 95-367 (403)
143 3dad_A FH1/FH2 domain-containi 36.2 2.8E+02 0.0097 32.9 13.2 123 2076-2198 162-303 (339)
144 3jxy_A Alkylpurine DNA glycosy 35.6 2.4E+02 0.0083 31.7 12.6 139 1342-1496 65-204 (232)
145 1vdy_A Hypothetical protein (R 35.2 60 0.002 33.5 6.4 74 2108-2181 45-129 (140)
146 3rru_A TOM1L1 protein; structu 34.4 1.7E+02 0.0057 30.6 9.9 95 2107-2201 48-149 (152)
147 1juq_A ADP-ribosylation factor 34.2 2.9E+02 0.0099 29.5 12.0 90 1680-1770 35-132 (171)
148 1dvp_A HRS, hepatocyte growth 32.2 2E+02 0.0067 32.2 10.9 95 2107-2201 37-134 (220)
149 3jxy_A Alkylpurine DNA glycosy 31.1 5E+02 0.017 29.0 14.2 127 1310-1452 71-198 (232)
150 1elk_A Target of MYB1; superhe 30.7 4.4E+02 0.015 27.6 12.6 89 1680-1769 38-133 (157)
151 2b6c_A Hypothetical protein EF 30.4 3.1E+02 0.011 30.4 12.2 92 1348-1452 100-191 (220)
152 2kw3_C Regulatory factor X-ass 29.4 16 0.00056 30.4 0.9 18 252-269 20-37 (62)
153 3zyq_A Hepatocyte growth facto 27.1 2.6E+02 0.0087 31.4 10.7 91 1679-1770 29-122 (226)
154 2npp_B PP2A, B subunit, serine 23.9 1.1E+03 0.038 29.1 24.8 247 1469-1725 128-399 (449)
155 3ut4_A CTHE_2751, putative unc 22.4 2.5E+02 0.0087 28.5 8.2 83 2106-2202 25-107 (134)
156 1dvp_A HRS, hepatocyte growth 21.2 4E+02 0.014 29.6 10.8 77 1694-1770 40-119 (220)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=9.7e-43 Score=512.62 Aligned_cols=934 Identities=16% Similarity=0.194 Sum_probs=690.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-----PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV 1207 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~ 1207 (2256)
..+++.+.+++..+|..|...|....... ++....++..|.+.. .+++|++|.+++.++..++..
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L----------~d~~~~vR~~A~~~L~~l~~~ 78 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL----------EDKNGEVQNLAVKCLGPLVSK 78 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT----------TCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHh
Confidence 67888899999999999988887765432 234556666666641 246799999999999999887
Q ss_pred hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccc---------cccchHHHHHHHhhccCCChhhhhhhhh
Q 000098 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD---------NVSLLFPIFENYLNKKASDEEKYDLVRE 1278 (2256)
Q Consensus 1208 ~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~---------~~~~Ll~~l~~~L~~~~~~~~~~~~vr~ 1278 (2256)
.++...+.+++.+ ..++.|.++.||.++..+...++...+.. .++.++|.+.+.+.+ .+ +..+|.
T Consensus 79 ~~~~~~~~i~~~L-l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~----~~~~~~ 152 (1230)
T 1u6g_C 79 VKEYQVETIVDTL-CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QE----DVSVQL 152 (1230)
T ss_dssp SCHHHHHHHHHHH-HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CS----CHHHHH
T ss_pred CCHHHHHHHHHHH-HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CC----chHHHH
Confidence 7665567778877 46899999999999999999888877765 588999998888763 11 126889
Q ss_pred HHHHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHH
Q 000098 1279 GVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRG 1357 (2256)
Q Consensus 1279 ~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~ 1357 (2256)
.++..++.+++..+.. .|+++.+++.++..+.+++ ..+|..
T Consensus 153 ~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~--------------------------------------~~vR~~ 194 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR--------------------------------------LAVRKR 194 (1230)
T ss_dssp HHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSS--------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCc--------------------------------------HHHHHH
Confidence 9999999998765432 3444444444444444333 455666
Q ss_pred HHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHH
Q 000098 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVR 1437 (2256)
Q Consensus 1358 Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR 1437 (2256)
|+.+|+.++...+...+. .+++.+.+.+.+..++..|..++.+++.++...|+.|.||+..++|.++..+.|+++.||
T Consensus 195 a~~al~~l~~~~~~~~~~--~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 195 TIIALGHLVMSCGNIVFV--DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHHHHTTTC----CT--THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHHHHhcCHHHHH--HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 666666666555443332 456666666654434567778889999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHh---hHHhHHHHHHHhcc-------------------------------------CCChhHHHH
Q 000098 1438 EAAECAARAMMSQLSAQ---GVKLVLPSLLKGLE-------------------------------------DKAWRTKQS 1477 (2256)
Q Consensus 1438 ~aa~~al~~l~~~l~~~---~v~~ilp~Ll~~L~-------------------------------------~~~w~~R~~ 1477 (2256)
+.+.+++..++..++.. .++.++|.+++.+. +..|++|.+
T Consensus 273 ~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~ 352 (1230)
T 1u6g_C 273 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA 352 (1230)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence 99999999998876643 34667777765542 125899999
Q ss_pred HHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc----------------------hhH
Q 000098 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----------------------PEI 1535 (2256)
Q Consensus 1478 a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~----------------------~~i 1535 (2256)
|+.+++.++...++.+..+++.++|.+...+.|.++.||.++..++..+....+. +.+
T Consensus 353 A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (1230)
T 1u6g_C 353 AAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV 432 (1230)
T ss_dssp HHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh
Confidence 9999999999888778889999999999999999999999999999998876532 234
Q ss_pred HhHHHHHHhhhCCCChhHHH-HHHHHHhc-ccccCCChhhHhhHHHHHHHhhcCCCH--HHHHHHHHHHHHHhhhcCCCC
Q 000098 1536 ASLVPTLLMGLTDPNDHTKY-SLDILLQT-TFVNTVDAPSLALLVPIVHRGLRERSA--ETKKKAAQIVGNMCSLVTEPK 1611 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr~-al~~L~~~-~~~~~~~~~~l~~i~p~L~~~L~d~~~--~vR~~a~~~l~~L~~~l~~~~ 1611 (2256)
..++|.+.+.+.+++..+|. ++..+... ......-.+.+..++|.+...+.+.++ .+|..++..++.+.... .+.
T Consensus 433 ~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~-~~~ 511 (1230)
T 1u6g_C 433 PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH-SPQ 511 (1230)
T ss_dssp THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS-CGG
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC-CHH
Confidence 66777777779999888874 44444431 111222246788999999999998764 88999898888887642 445
Q ss_pred cchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc-------C---chHHHHHHHHHHhh-cCCCHHHHHHHHH
Q 000098 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-------E---NFPDLVSWLLDALK-SDNSNVERSGAAQ 1680 (2256)
Q Consensus 1612 ~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~-------~---~~~~lip~Ll~~L~-~~~~~~~R~~aa~ 1680 (2256)
.+.+|++.++|.+...+.|+++.+|..+..+++.+++.+|+ . |++.++|.++..+. .+.+..+|..++.
T Consensus 512 ~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~ 591 (1230)
T 1u6g_C 512 VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAIS 591 (1230)
T ss_dssp GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 68899999999999999999999999999999999999887 2 56788999988885 3466779999999
Q ss_pred HHHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhC-hhHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000098 1681 GLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENESVRDA 1756 (2256)
Q Consensus 1681 ~L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g-~~f~~yl~~ilp~Ll~~L~d~~~~VR~~ 1756 (2256)
+++.++...|.. ++..+++.+...+.+. ..|..++.+++.++...+ .++.+|++.++|.+...+.+++..+|..
T Consensus 592 ~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~ 669 (1230)
T 1u6g_C 592 CMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLG 669 (1230)
T ss_dssp HHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999998876 5677777777776644 478888999998886543 3678999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccch-hchHHHH---HhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHH
Q 000098 1757 ALGAGHVLVEHYATTSL-PLLLPAV---EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRA 1832 (2256)
Q Consensus 1757 Al~al~~iv~~~~~~~~-~~llp~L---~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~ 1832 (2256)
++.++..++..++.... +.+.|.+ ...+.+++|.++..+.+.+..++...++ . .
T Consensus 670 a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~----~----------~-------- 727 (1230)
T 1u6g_C 670 TLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS----S----------L-------- 727 (1230)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGG----G----------G--------
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCch----h----------H--------
Confidence 99999999988764322 2233333 3345678899999999988887522100 0 0
Q ss_pred HHHHhcchhhHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcCh--hHHHHHHHHHHHHHHHHhcC---CCHHHHHHH
Q 000098 1833 IIEVLGRDKRNEVLAALYMVRSDV--SLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSLAS---SSSERRQVA 1905 (2256)
Q Consensus 1833 l~~~Lg~e~~~~vl~~L~~~~~D~--~~~Vr~aA~~~l~~l~~~~~--~~l~~~l~~Ll~~L~~~L~~---~~~~~R~~A 1905 (2256)
....+.+++.++....+. ......+....++.++.+.+ ..+.++++.++..+.. .+ .....+..+
T Consensus 728 ------~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~~ 799 (1230)
T 1u6g_C 728 ------SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS--QSTALTHKQSYYSI 799 (1230)
T ss_dssp ------GGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTT--C----CCHHHHHHH
T ss_pred ------HHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccC--CCCccccchhhHHH
Confidence 001223344444433222 23334455566777766543 2455555555433210 01 244568889
Q ss_pred HHHHHHHHHhhCccchhchHHHHhhhcCCC--ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHH
Q 000098 1906 GRALGELVRKLGERVLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRE 1983 (2256)
Q Consensus 1906 ~~aL~~lv~~~~~~~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~ 1983 (2256)
+++++.++...|+... .+++.+...+.++ +...+..+|.+++++....+ +.+ .+++.+.+..++.|++++||.
T Consensus 800 a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~---~~~-~~~l~~~~~~~l~~~~~~Vr~ 874 (1230)
T 1u6g_C 800 AKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID---LSG-QLELKSVILEAFSSPSEEVKS 874 (1230)
T ss_dssp HHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC---CCS-CTHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHhcchhhH-HHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCC---Ccc-cccHHHHHHHHhCCCCHHHHH
Confidence 9999999998877543 4445455555542 45567777788887754322 112 255788899999999999999
Q ss_pred HHHHHHHHHHHHhchhhHHhHHHHHHHhhccCC-chHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHH
Q 000098 1984 SAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ-TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAE 2062 (2256)
Q Consensus 1984 ~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~-~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~ 2062 (2256)
+|+.++|.+.. ...+.++|.+++.+.++. .....+.++++++..
T Consensus 875 aAa~aLg~l~~----~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~------------------------------- 919 (1230)
T 1u6g_C 875 AASYALGSISV----GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS------------------------------- 919 (1230)
T ss_dssp HHHHHHHHHHH----HTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHS-------------------------------
T ss_pred HHHHHhHHHhc----cCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhc-------------------------------
Confidence 99999999874 346678999999987642 233445555555421
Q ss_pred HhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHh
Q 000098 2063 VAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2256)
Q Consensus 2063 ~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~ 2142 (2256)
..+..+.+|...|++.|++.+.+.++.+|..+.+|++.++...+ ..++|.+.+.+.++++.+|..++.+++.++..
T Consensus 920 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~----~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~ 995 (1230)
T 1u6g_C 920 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP----ETLLPRLKGYLISGSSYARSSVVTAVKFTISD 995 (1230)
T ss_dssp SCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG----GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCS
T ss_pred CChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 12456788899999999999988888999999999999998643 46888999999999999999999999999888
Q ss_pred chhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC---CchhchHHHHHHH
Q 000098 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK---EVQPSYIKVIRDA 2199 (2256)
Q Consensus 2143 ~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~---e~l~~lv~~l~~~ 2199 (2256)
.+..+.+|++.+++.++..++|++.+||++|+.+|+.+++..|. ++++.++|.+.+.
T Consensus 996 ~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~ 1055 (1230)
T 1u6g_C 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNE 1055 (1230)
T ss_dssp SCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHT
T ss_pred CchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999999987764 3455555555544
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1e-39 Score=480.43 Aligned_cols=1045 Identities=14% Similarity=0.130 Sum_probs=743.4
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCC--CchhhhhhhhhhhccCCcHHHHHHHHHHHhhcCCCCC----
Q 000098 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSL--PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFG---- 1129 (2256)
Q Consensus 1056 ~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~~~~~---- 1129 (2256)
+.++..||.++.|||+.+|..|++.|.+......... .....+...++....|.+..+|..|...-..+.....
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4578999999999999999999999987652210111 1123456677777778999999887765544332222
Q ss_pred CCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHH
Q 000098 1130 TDY-SGLFKALSHSNYNVRLAAAEALATALDEYPD----------SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2256)
Q Consensus 1130 ~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~----------~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2256)
+.+ ..+++.+.+++..+|.+++++++.++...+. .++.++..|.+... ..+.|.+|.++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~---------~~~~~~~~~~al 155 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA---------KQEDVSVQLEAL 155 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS---------CCSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHc---------CCCchHHHHHHH
Confidence 223 5667777888899999999999999877553 37788888877641 125689999999
Q ss_pred HHHHHhhhhhccC---ChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhh
Q 000098 1199 LALHSAADVLRTK---DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1199 ~aL~~l~~~~~~~---~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
.+|..++..++.. ..+.++..++ ..+.|+++.||..++.++..++...+.+.++.+++.+.+.|... .+ ..
T Consensus 156 ~~l~~~~~~~~~~l~~~~~~ll~~l~-~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~-~~----~~ 229 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVNFHPSILTCLL-PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN-DS----MS 229 (1230)
T ss_dssp HHHHHHHHHTCSSCTTTHHHHHHHHG-GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT-CS----SC
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-Cc----hh
Confidence 9999998766543 3456777764 68899999999999999999888777777788888888887652 11 25
Q ss_pred hhhHHHHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCC--CH
Q 000098 1276 VREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KY 1352 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~--~~ 1352 (2256)
+|..++.+++.++...++. .|++..+++.++..+.++++.+|+.+..++..++...++.+..+++.++..+...- +.
T Consensus 230 ~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~ 309 (1230)
T 1u6g_C 230 TTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDP 309 (1230)
T ss_dssp SCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCC
Confidence 7888999999999876542 46778899999999999999999999999999988887776667777666665321 11
Q ss_pred HHHHHHHHHH-HHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC
Q 000098 1353 GERRGAAFGL-AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2256)
Q Consensus 1353 ~vR~~Aa~~L-~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D 1431 (2256)
.......... ..+-...+.+... +..... ...++..|.+|+.|..++..++...++.|.+|+..++|.+...++|
T Consensus 310 ~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~--~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 385 (1230)
T 1u6g_C 310 NYNYDDEDEDENAMDADGGDDDDQ--GSDDEY--SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE 385 (1230)
T ss_dssp ---------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC
T ss_pred CCCCcccccccccccccccccchh--hccccc--ccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC
Confidence 1110000000 0000000000000 000000 0122346899999999999999877778999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHhhhhH------------------hhH----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1432 QVVAVREAAECAARAMMSQLSA------------------QGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1432 ~~~~VR~aa~~al~~l~~~l~~------------------~~v----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
.+..||.++..++..++...+. ..+ +.++|.+.+.+.+.+|++|.+++.+++.++...
T Consensus 386 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 386 REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999888775431 122 455666666699999999999999999999998
Q ss_pred hhhHhhhhhhHHHHHHHhhcCCCH--HHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhhhCCCChhHH-HHHHHHHh
Q 000098 1490 PQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTK-YSLDILLQ 1562 (2256)
Q Consensus 1490 p~~l~~~L~~Ivp~L~~~L~D~~~--~VR~aA~~aL~~l~~~i~~~----~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~ 1562 (2256)
+..+..+++.++|.+...+.|+++ .||..++.++..+.+..+.. +++.++|.++..+.|++..++ .++..+..
T Consensus 466 ~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~ 545 (1230)
T 1u6g_C 466 PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQ 545 (1230)
T ss_dssp TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 888888999999999999999875 89999999999998766543 568899999999999887775 45555443
Q ss_pred c-cc-c------cCCChhhHhhHHHHHHHhh--cCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCC
Q 000098 1563 T-TF-V------NTVDAPSLALLVPIVHRGL--RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 1632 (2256)
Q Consensus 1563 ~-~~-~------~~~~~~~l~~i~p~L~~~L--~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~ 1632 (2256)
. .. . .....+....++|.+...+ .+.++.+|..+..+++.++...+ ..+.++++.+++.+...+.+.
T Consensus 546 l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g--~~~~~~~~~~l~~L~~~l~~e- 622 (1230)
T 1u6g_C 546 LVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG--DNLGSDLPNTLQIFLERLKNE- 622 (1230)
T ss_dssp HHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG--GGCCTHHHHHHHHHHHHTTSS-
T ss_pred HHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC--chhhhhHHHHHHHHHHHhccc-
Confidence 1 11 1 1133467888999999988 67889999999999999998654 345678899999998888754
Q ss_pred HHHHHHHHHHHHHHHHhhCc----CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHh
Q 000098 1633 PEVRSVAARAIGSLIRGMGE----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRN 1704 (2256)
Q Consensus 1633 ~~VR~~a~~aL~~L~~~~g~----~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~ 1704 (2256)
..|..+.++++.++...+. .+.+.++|.+...+.+ .+...|..++.+++.++...+.. .+.+++..+...
T Consensus 623 -~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~l 700 (1230)
T 1u6g_C 623 -ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK-NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 700 (1230)
T ss_dssp -SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGG
T ss_pred -hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhh
Confidence 4788899999998865432 2567788888887775 56779999999999999988743 344444444455
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc-----cchhchHHH
Q 000098 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT-----TSLPLLLPA 1779 (2256)
Q Consensus 1705 l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~-----~~~~~llp~ 1779 (2256)
+.+.+..++..++.++..+....+..+.++.+.++|.++..+.++. ++..+..++..+.+.+.. ..+..+++.
T Consensus 701 l~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~ 778 (1230)
T 1u6g_C 701 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGYMDLLRM 778 (1230)
T ss_dssp SCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 6678899999999999999988887777788889999998887653 122233333333333322 234556666
Q ss_pred HHhhcCC-----CCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 000098 1780 VEDGIFN-----DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2256)
Q Consensus 1780 L~~~l~d-----~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2256)
+.+.+.. ..+..+..+.+.+|.+......... .++..+.....
T Consensus 779 l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~--------------------------------~~~~~~~~~~~ 826 (1230)
T 1u6g_C 779 LTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP--------------------------------AVVGQFIQDVK 826 (1230)
T ss_dssp HSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH--------------------------------HHHTTTTTTTT
T ss_pred HhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH--------------------------------HHHHHHHHHhC
Confidence 6544321 3566777778888887633111000 00111111111
Q ss_pred C--CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhc
Q 000098 1855 D--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2256)
Q Consensus 1855 D--~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l 1932 (2256)
+ ....++..++.+++.+....+ +.+ .|.+.+.+++.+.++++.+|..|+.+||.++.. .++.++|.+.+.+
T Consensus 827 ~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~----~~~~~lp~ll~~l 899 (1230)
T 1u6g_C 827 NSRSTDSIRLLALLSLGEVGHHID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVG----NLPEYLPFVLQEI 899 (1230)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH----THHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcccCC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhcc----CHHHHHHHHHHHH
Confidence 1 233445555555555433211 111 255677778888999999999999999999853 3455677777766
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhh
Q 000098 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL 2012 (2256)
Q Consensus 1933 ~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L 2012 (2256)
.+. +..|...+.++.+++...+.+.+.+|.+.+.+.+...+.+.+..+|..+++++|.+..... +.++|.+.+.+
T Consensus 900 ~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~----~~l~p~l~~~l 974 (1230)
T 1u6g_C 900 TSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP----ETLLPRLKGYL 974 (1230)
T ss_dssp HSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG----GGTHHHHTTTS
T ss_pred hcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh----HHHHHHHHHHh
Confidence 543 6778889999999998887778889999999999998888888999999999999987532 45778877777
Q ss_pred ccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHH
Q 000098 2013 EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQS 2092 (2256)
Q Consensus 2013 ~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~ 2092 (2256)
.++.... .. ....++..+....+..+.+|++.+++.++..+++++.++|.
T Consensus 975 ~~~~~~~---R~---------------------------~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~ 1024 (1230)
T 1u6g_C 975 ISGSSYA---RS---------------------------SVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRR 1024 (1230)
T ss_dssp SSSCHHH---HH---------------------------HHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHH
T ss_pred cCCCHHH---HH---------------------------HHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 6543210 00 01111222222234556678888999999999999999999
Q ss_pred HHHHHHHHHHhhcch---hcHHHHHHHHHhhcCCC------------------ChhhHHHHHHHHHHHHHhchhhhhhhH
Q 000098 2093 LAKEAAETVTLVIDE---EGVESLVSELLKGVGDN------------------QASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2256)
Q Consensus 2093 ~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~~~------------------~~~vR~~A~~~l~~l~~~~~~~~~~y~ 2151 (2256)
.+..++..++...+. +++..++|.|...+.-. .-.+|.+|+.+++.+.......+. +
T Consensus 1025 ~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~--~ 1102 (1230)
T 1u6g_C 1025 VALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLD--I 1102 (1230)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSC--H
T ss_pred HHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCC--H
Confidence 999999999986543 57888999988776432 237999999999999987544432 4
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC---CchhchHHHHHHHHhhh
Q 000098 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK---EVQPSYIKVIRDAISTS 2203 (2256)
Q Consensus 2152 ~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~---e~l~~lv~~l~~~l~~~ 2203 (2256)
..++..++..+.| +.+++.-+...+.+++...|. ..++.++.++++.|...
T Consensus 1103 ~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1156 (1230)
T 1u6g_C 1103 FEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTK 1156 (1230)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCC
T ss_pred HHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667778888888 489999999999999988876 56788899988877654
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=6.7e-35 Score=415.33 Aligned_cols=742 Identities=13% Similarity=0.150 Sum_probs=566.3
Q ss_pred HhHHHhh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh---
Q 000098 1133 SGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2256)
Q Consensus 1133 ~~ll~~l-~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~--- 1207 (2256)
..++... .+++..+|+.|.+.|..+.+. .|+.+..+++.+.+ .+.+.++|..++..|++....
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~------------~~~~~~vR~~A~~~lk~~i~~~w~ 74 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID------------ENTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC------------TTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC------------CCCChHHHHHHHHHHHhhccCcCh
Confidence 4566666 788999999999999886654 24444433333321 123567899999999987531
Q ss_pred -------------hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHhhccCCChhhh
Q 000098 1208 -------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKY 1273 (2256)
Q Consensus 1208 -------------~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~~~~ 1273 (2256)
++.+....+.+.++ +++.+.++.||..+..+...+....++ ..|+.++|.+.+.+.+. . +
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~----~ 148 (861)
T 2bpt_A 75 VKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-Q----P 148 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-S----C
T ss_pred HHHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-C----C
Confidence 33333445666664 578999999999999998888877655 47999999998887541 1 2
Q ss_pred hhhhhHHHHHHHHHHhhhccC----CcchHHHHHHHHHHcCCC--CHHHHHHHHHhhHHhHHhhcCc-----hHHHHHHH
Q 000098 1274 DLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSRL 1342 (2256)
Q Consensus 1274 ~~vr~~av~~L~~La~~l~~~----~~~i~~il~~Ll~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~-----~~~~l~~L 1342 (2256)
..+|+.++.+++.+++.+... .+....+++.+...+.++ +..||..+.+|+..++..++.. ...++-..
T Consensus 149 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~ 228 (861)
T 2bpt_A 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHH
Confidence 368999999999999876543 356788889999999988 8999999999998876544221 11223333
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchh-h-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---------
Q 000098 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK-Y-GIAATLREGLADRNSAKRREGALLAFECLCEKLG--------- 1411 (2256)
Q Consensus 1343 l~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~-~-~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~--------- 1411 (2256)
+..+..++++.+|..+..+|..++...+...... . .+++.+...+.+. +..+|..++.++..+++...
T Consensus 229 l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T 2bpt_A 229 VCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 3445567789999999999999998876322111 1 4666666666665 78999999999999887631
Q ss_pred --------cCchHhHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHH
Q 000098 1412 --------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2256)
Q Consensus 1412 --------~~~~pyv~~llp~ll~~l~D-------~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~ 1476 (2256)
..+.+++..++|.++..+.+ ++..+|.++..+++.++..++...+..++|.+.+.+.+.+|+.|.
T Consensus 308 ~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 387 (861)
T 2bpt_A 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHH
Confidence 23467788999999988874 345899999999999999888777788999999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH
Q 000098 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~ 1555 (2256)
+++.++|.+++++. +.+..+++.++|.+...+.|+++.||.++++++++++..++...
T Consensus 388 ~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--------------------- 446 (861)
T 2bpt_A 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI--------------------- 446 (861)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS---------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc---------------------
Confidence 99999999998874 77888899999999999999999999999999999997654210
Q ss_pred HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC--CCcchhhhhhhhHHHHHhhc--CC
Q 000098 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLV--DP 1631 (2256)
Q Consensus 1556 al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~--~~~l~~~l~~Ll~~L~~~L~--d~ 1631 (2256)
...+.+..++|.+.+.+.+. +.+|..++.++.++++.+++ +..+.+|++.+++.+...+. |.
T Consensus 447 -------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~ 512 (861)
T 2bpt_A 447 -------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN 512 (861)
T ss_dssp -------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC
T ss_pred -------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCc
Confidence 00112334556666666665 78899999999999886542 35678999999999999998 44
Q ss_pred CHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcC--------------CCHHHHHHHHHHHHHHHHHhcHh--
Q 000098 1632 IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV-- 1692 (2256)
Q Consensus 1632 ~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~--------------~~~~~R~~aa~~L~~i~~~~g~~-- 1692 (2256)
++.+|..+..+++.++...|++ +++.++|.+++.+.+. ....+|..++.+++.++..+|..
T Consensus 513 ~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 513 EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5899999999999999998865 4567788888777632 12346778888999999998874
Q ss_pred -HHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1693 -YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1693 -~l~~ll~~ll~~l~~~~~-~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
+.+.+++.++..+++.++ .+|+.++.+++.++...|.+|.+|++.++|.++..+.++++.+|..+..++..++...+.
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch
Confidence 667888888888888777 899999999999999999999999999999999999888888998888887777665543
Q ss_pred cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHH
Q 000098 1771 TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2256)
Q Consensus 1771 ~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~ 1850 (2256)
. +.|.+ +.+++.++
T Consensus 673 ~----~~~~~--------------------------------------------------------------~~l~~~l~ 686 (861)
T 2bpt_A 673 D----FRRYS--------------------------------------------------------------DAMMNVLA 686 (861)
T ss_dssp G----GHHHH--------------------------------------------------------------HHHHHHHH
T ss_pred h----ccchH--------------------------------------------------------------HHHHHHHH
Confidence 2 11111 11222222
Q ss_pred HHhcCC--cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHhhC
Q 000098 1851 MVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRKLG 1917 (2256)
Q Consensus 1851 ~~~~D~--~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-----------~~~R~~A~~aL~~lv~~~~ 1917 (2256)
..+.+. +..+|..++.+++.++...+..+.++++.+++.+...+.... ..+|..+..+++.++..++
T Consensus 687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 233332 256889999999999988888899999999999988876431 4578999999999999887
Q ss_pred c------cchhchHHHHhhhcCCC----ChhhHHhHHHHHHHHHHhhChhhhHhhHh-hHHHHHHHHhc---CCCHHHHH
Q 000098 1918 E------RVLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEVRE 1983 (2256)
Q Consensus 1918 ~------~~l~~llp~L~~~l~d~----~~~vR~~a~~aL~eii~~~~~~~l~~~l~-~li~~l~~~L~---D~~~~VR~ 1983 (2256)
. .+++.+++.+...+.|. +..+|..++.+++.++..+++..+.+|++ .+++.+.+.+. +.+..+++
T Consensus 767 ~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 846 (861)
T 2bpt_A 767 DKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKD 846 (861)
T ss_dssp TCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHH
Confidence 3 25567777777776663 78899999999999999884445778888 88998888765 56778999
Q ss_pred HHHHHHHHHHH
Q 000098 1984 SAGLAFSTLFK 1994 (2256)
Q Consensus 1984 ~A~~al~~l~~ 1994 (2256)
.|.-+.+.+.+
T Consensus 847 ~~~wa~~~~~~ 857 (861)
T 2bpt_A 847 TARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887764
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.4e-35 Score=422.34 Aligned_cols=746 Identities=15% Similarity=0.157 Sum_probs=549.7
Q ss_pred ChHHHHHHHhhh-cCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHHH-------------
Q 000098 1055 QPNEVASALHGV-YTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDI------------- 1120 (2256)
Q Consensus 1055 ~~~~~~~ll~~~-~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~------------- 1120 (2256)
+++++.++|.++ +|||+++|+.|++.|++.... +.|.....+..++ ...+.+.++|.+|...
T Consensus 2 d~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~---~~~~~~~~l~~il-~~~~~~~~vR~~A~~~lk~~i~~~w~~~~ 77 (861)
T 2bpt_A 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSND---NFLQFAGLSSQVL-IDENTKLEGRILAALTLKNELVSKDSVKT 77 (861)
T ss_dssp CHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred CHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHH-hCCCCChHHHHHHHHHHHhhccCcChHHH
Confidence 457889999999 999999999999999875311 1122222222222 2223477788876554
Q ss_pred ------Hhh-cCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CC-CcHHHHHHHHHHHHHhhcCCCCCCCCC-
Q 000098 1121 ------WDR-YGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLYIRDIGLGGDNVDA- 1189 (2256)
Q Consensus 1121 ------w~~-~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~-~~~~~~l~~L~~~~~~~~~~~~~~~~~- 1189 (2256)
|.. ++.+.+..+ ..+++.+.+++..+|..++++++.++.. +| +.|++++..|.+.. .++
T Consensus 78 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l----------~~~~ 147 (861)
T 2bpt_A 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNT----------GAEQ 147 (861)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHT----------STTS
T ss_pred HHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHH----------hcCC
Confidence 443 443444445 7788889999999999999999999865 67 48999999998863 123
Q ss_pred CcchhHHHHHHHHHhhhhhccC------ChhHhHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhccc-----cccchH
Q 000098 1190 GWLGRQGIALALHSAADVLRTK------DLPVIMTFLISRALADT--NADVRGRMLNAGIMIIDKHGRD-----NVSLLF 1256 (2256)
Q Consensus 1190 ~~~~R~~~~~aL~~l~~~~~~~------~~~~l~~~lv~~~l~D~--~~~VR~~a~~a~~~~i~~~g~~-----~~~~Ll 1256 (2256)
++..|.++..++..++..+..+ ..+.+++.+ ..++.|. ++.||..++++...++...+.. .+..++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l-~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 226 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAI-VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHH-HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHH
Confidence 5789999999999998765443 234566665 3678887 8999999999987765322211 124566
Q ss_pred HHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccC-CcchH-HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh---
Q 000098 1257 PIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM--- 1331 (2256)
Q Consensus 1257 ~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~-~~~i~-~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~--- 1331 (2256)
+.+...+.+ .+..+|..++.+++.++...+.. .+++. .+++.++..+.++++.++..+.+++..++...
T Consensus 227 ~~l~~~~~~------~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 300 (861)
T 2bpt_A 227 QVVCEATQA------EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300 (861)
T ss_dssp HHHHHHHTC------SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 766665533 12368999999999998765432 34556 77777888899999999998888877766542
Q ss_pred ------------------cCchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH
Q 000098 1332 ------------------QDEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL 1387 (2256)
Q Consensus 1332 ------------------~~~~~~~l~~Ll~~L~~------~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l 1387 (2256)
......+++.++..+.. +++|.+|+.++.+|+.++...|...+. .+++.+.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~--~l~~~l~~~l 378 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE--PVLEFVEQNI 378 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHT
T ss_pred hhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH--HHHHHHHHHc
Confidence 11124566777777764 235899999999999999998855543 6888888888
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-----hhHHhHHH
Q 000098 1388 ADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----QGVKLVLP 1461 (2256)
Q Consensus 1388 ~~~~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-----~~v~~ilp 1461 (2256)
.+. +|..|++++.+++.++++.+ +.+.+|+..++|.++..+.|+++.||.++.++++.++..++. ..+..++|
T Consensus 379 ~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~ 457 (861)
T 2bpt_A 379 TAD-NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457 (861)
T ss_dssp TCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred CCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 765 89999999999999998775 667899999999999999999999999999999999887654 24688999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhCh----hhHhhhhhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhcCch--
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLT--DTHPKVQSAGQTALQQVGSVIKNP-- 1533 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p----~~l~~~L~~Ivp~L~~~L~--D~~~~VR~aA~~aL~~l~~~i~~~-- 1533 (2256)
.+++.+.++ +++|..++.+++.++..++ ..+.++++.+++.+...+. |.++.||..++.+++.++...+..
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~ 536 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH
Confidence 999999876 9999999999999998754 5677899999999999997 455899999999999999887642
Q ss_pred -hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC-CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCC
Q 000098 1534 -EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2256)
Q Consensus 1534 -~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~-~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~ 1611 (2256)
++..++|.+++.+.+. .. .... ...+ -.+....+|..++.+++.++..++ .
T Consensus 537 ~~~~~l~~~l~~~l~~~-----------~~--~~~~i~~~~------------~~~~~~~~~~~~~~~l~~l~~~~~--~ 589 (861)
T 2bpt_A 537 ETSASISTFVMDKLGQT-----------MS--VDENQLTLE------------DAQSLQELQSNILTVLAAVIRKSP--S 589 (861)
T ss_dssp HHHHHHHHHHHHHHHHH-----------TT--SCGGGCCHH------------HHHHHHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHHHHHHHHHH-----------Hh--hhcccCChh------------hHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 3445555554433210 00 0000 0000 001123567788889999988654 3
Q ss_pred cchhhhhhhhHHHHHhhcCCCH-HHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1612 DMIPYIGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2256)
Q Consensus 1612 ~l~~~l~~Ll~~L~~~L~d~~~-~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~ 1687 (2256)
.+.||++.+++.+...+.+.++ .+|+.+..+++.++...|++ |++.++|.+++.+.+ .++.+|..++..++.++.
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ-VDSPVSITAVGFIADISN 668 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHH
Confidence 6789999999999999998888 99999999999999998876 567899999999964 556689999999999999
Q ss_pred HhcHh---HHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCC-----------H
Q 000098 1688 ALGTV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-----------E 1751 (2256)
Q Consensus 1688 ~~g~~---~l~~ll~~ll~~l~~~~--~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~-----------~ 1751 (2256)
.+|.. ++..+++.++..+.+++ +.+|..++.+++.++...|+.|.+|++.++|.++..+.... .
T Consensus 669 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~ 748 (861)
T 2bpt_A 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQI 748 (861)
T ss_dssp HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHH
T ss_pred HhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 98865 56788888888887764 89999999999999999999999999999999999887421 2
Q ss_pred HHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHH
Q 000098 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2256)
Q Consensus 1752 ~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~ 1831 (2256)
.+|.++++++..++..++.. | .
T Consensus 749 ~vr~~~l~~~~~i~~~l~~~------~----------------------------------------------------~ 770 (861)
T 2bpt_A 749 KVLEAVLDAYVGIVAGLHDK------P----------------------------------------------------E 770 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTTC------H----------------------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHccC------H----------------------------------------------------H
Confidence 34444444444444333210 0 0
Q ss_pred HHHHHhcchhhHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHhcC-hhHHHHHHH-HHHHHHHHHhc---CCCHHHH
Q 000098 1832 AIIEVLGRDKRNEVLAALYMVRSDV----SLSVRQAALHVWKTIVANT-PKTLKEIMP-VLMNTLISSLA---SSSSERR 1902 (2256)
Q Consensus 1832 ~l~~~Lg~e~~~~vl~~L~~~~~D~----~~~Vr~aA~~~l~~l~~~~-~~~l~~~l~-~Ll~~L~~~L~---~~~~~~R 1902 (2256)
.+ ..+...++..+.....|. +..+|.+|+.+++.++... +..+.++++ .+++.+++.+. +.+..++
T Consensus 771 ~~-----~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 845 (861)
T 2bpt_A 771 AL-----FPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATK 845 (861)
T ss_dssp HH-----GGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHH
Confidence 00 001122333333344443 6789999999999999877 667777777 77777776665 4667889
Q ss_pred HHHHHHHHHHHHhh
Q 000098 1903 QVAGRALGELVRKL 1916 (2256)
Q Consensus 1903 ~~A~~aL~~lv~~~ 1916 (2256)
..|.++++.+.+.+
T Consensus 846 ~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 846 DTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3e-34 Score=406.25 Aligned_cols=723 Identities=15% Similarity=0.177 Sum_probs=550.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhh----
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVL---- 1208 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~---- 1208 (2256)
..+++...+++..+|+.|.+.|..+ +..|+.+..+...+... .+.+..+|..++..|++.....
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~~~-----------~~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKL-----------KSEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTC-----------TTSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHhcc-----------CCCChHHHHHHHHHHHHHHHHccCCC
Confidence 3445555588999999999999754 44555444333333211 1245689999999999887532
Q ss_pred ccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHH
Q 000098 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2256)
Q Consensus 1209 ~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La 1288 (2256)
+.+....+.+.++ ++++|+++.||..+..+...+....+.+.|+++++.+.+.+.+. +..+|+.++..++.++
T Consensus 84 ~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~------~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 84 PNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE------DYNTCEGAFGALQKIC 156 (852)
T ss_dssp CHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHH
Confidence 1122344555554 68999999999999999999988777889999999999987652 2268999999999999
Q ss_pred hhhccC------CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhc----CchHHHHHHHHHHHhcCCCHHHHHHH
Q 000098 1289 KHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ----DEAPTLVSRLLDQLMKSDKYGERRGA 1358 (2256)
Q Consensus 1289 ~~l~~~------~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~----~~~~~~l~~Ll~~L~~~~~~~vR~~A 1358 (2256)
+..+.. ...+..+++.++..+.+++..||..+..|+..++.... .....+++.++..+ .+++..+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~-~d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA-GDEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc-CCCCHHHHHHH
Confidence 876432 12367789999999999999999999999887764432 22356666666644 45679999999
Q ss_pred HHHHHHHHhhhCcccchh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hccCchHhHHHHHHHHHHHc-----
Q 000098 1359 AFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF----- 1429 (2256)
Q Consensus 1359 a~~L~~lv~~~g~~~~~~--~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~--l~~~~~pyv~~llp~ll~~l----- 1429 (2256)
+.+|..++...+.. +.. ..+++.+.+.+.+. ++.+|..++.++..+++. ..+.+.||+..++|.++..+
T Consensus 236 ~~~L~~l~~~~~~~-~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~ 313 (852)
T 4fdd_A 236 CRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI 313 (852)
T ss_dssp HHHHHHHHHHCHHH-HGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHhCHHH-HHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHh
Confidence 99999999866422 111 15777777777765 788999999988888763 22346789999999999887
Q ss_pred ------CC-----------CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh
Q 000098 1430 ------SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2256)
Q Consensus 1430 ------~D-----------~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~ 1492 (2256)
+| .+..||.++..+++.++...+...++.++|.+.+.+.+.+|+.|.+|+.++|.+++++++.
T Consensus 314 d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 314 DIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 44 2346899999999999998887667889999999999999999999999999999999988
Q ss_pred HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChh
Q 000098 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 1572 (2256)
Q Consensus 1493 l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~ 1572 (2256)
+..+++.++|.+...++|+++.||.+|+++++++++.++... ..+
T Consensus 394 ~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~ 438 (852)
T 4fdd_A 394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-----------------------------------PDT 438 (852)
T ss_dssp HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-----------------------------------TTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-----------------------------------HHH
Confidence 888999999999999999999999999999999987643210 011
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
.+..+++.+.+.+.+.++.+|..++.+++++++..+ ..+.||++.+++.+...+.+........+..+++.++...|+
T Consensus 439 ~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~--~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 439 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516 (852)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG--GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh--HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhh
Confidence 233466667777777788999999999999998543 458899999999999999988888888899999999988875
Q ss_pred C-----chHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhcc----------------
Q 000098 1653 E-----NFPDLVSWLLDALKS--DNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCS---------------- 1706 (2256)
Q Consensus 1653 ~-----~~~~lip~Ll~~L~~--~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~---------------- 1706 (2256)
. |++.++|.+++.+.. +.+...+ .+..+++.++..+|.. ++..+++.++..+.
T Consensus 517 ~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 3 677788888754322 2233344 6788899999998875 44555554444322
Q ss_pred -CCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc---chhchHHHH
Q 000098 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAV 1780 (2256)
Q Consensus 1707 -~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~---~~~~llp~L 1780 (2256)
.++..++..++.+++.++..+|.+|.+|+ +.+++.++..+.|+++.||..+..+++.++..++.. .++.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 23667899999999999999999999998 789999999999999999999999999998877754 345688999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCC--cH
Q 000098 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV--SL 1858 (2256)
Q Consensus 1781 ~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~--~~ 1858 (2256)
.+.+.++.+.+|..++..+|.+...... .+ ..+...++..|...+.++ ..
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~---------------------------~~-~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGI---------------------------EM-QPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGG---------------------------GG-GGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhH---------------------------hH-HHHHHHHHHHHHHHhCCCCCCc
Confidence 9999888899999999999998633210 00 112245666666665544 56
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhCccchhchHHHHh--hhcCCC
Q 000098 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILS--RGLKDP 1935 (2256)
Q Consensus 1859 ~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~--~~l~d~ 1935 (2256)
.+++.++.+++.++...|..+.++++.+++.+...+.. .+.+.|..+.++|..++..-+...++.+..... ..+.++
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~ 807 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 807 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC
Confidence 79999999999999999988889999999999988864 566679999999999999866655555443222 223444
Q ss_pred ChhhHHhH
Q 000098 1936 SASRRQGV 1943 (2256)
Q Consensus 1936 ~~~vR~~a 1943 (2256)
.++.+...
T Consensus 808 ~~~l~~~~ 815 (852)
T 4fdd_A 808 KDDLRDMF 815 (852)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 45444433
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.5e-35 Score=415.74 Aligned_cols=687 Identities=14% Similarity=0.152 Sum_probs=531.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhhcCCCC
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~~~~~~ 1128 (2256)
+++.++|++++|||+++|++|+++|++... -|....++..+.....+.+..+|.+|.. .|...+.+.
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-----~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~ 87 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 87 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH
Confidence 467889999999999999999999997641 1333334555554336778899988775 454444344
Q ss_pred CCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhh
Q 000098 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2256)
Q Consensus 1129 ~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~ 1206 (2256)
+..+ ..+++.+.+++..+|..++++++.++.. +|+.|+++++.|.+.. .++++.+|.++..+|..++.
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----------~~~~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL----------DSEDYNTCEGAFGALQKICE 157 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----------SCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHH
Confidence 4445 7788889999999999999999999865 5678888888887763 13457899999999999887
Q ss_pred hhccC----C----hhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc---ccccchHHHHHHHhhccCCChhhhhh
Q 000098 1207 VLRTK----D----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1207 ~~~~~----~----~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~---~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
..+.. . .+.++..+ .+++.|.++.||..++.+...++...+. ..+..+++.+...+.+ .+..
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l-~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d------~~~~ 230 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKF-LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGD------EEPE 230 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHH-TTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTC------CCHH
T ss_pred HhHHHhchhhhcchHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCC------CCHH
Confidence 65432 2 34556655 3688999999999999998877654332 2234556666555443 1236
Q ss_pred hhhHHHHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHh------hcCchHHHHHHHHHHHh-
Q 000098 1276 VREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------MQDEAPTLVSRLLDQLM- 1347 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~------~~~~~~~~l~~Ll~~L~- 1347 (2256)
+|..++.+|+.+++..+.. .|++..+++.++..+.++++.||..+.+++..+... ..+....+++.++..+.
T Consensus 231 vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 231 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999764332 467788999999999999999999888887776532 23345667777777662
Q ss_pred ---------cC-----------CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000098 1348 ---------KS-----------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407 (2256)
Q Consensus 1348 ---------~~-----------~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~ 1407 (2256)
.+ .+|.+|+.|+.+|+.++...|...+. .+++.+.+.+.+. +|..|++++.+++.++
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~--~l~~~l~~~l~~~-~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIA 387 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHTCS-SHHHHHHHHHHHHHTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 22 35778999999999999998865443 6889998888876 8999999999999999
Q ss_pred HHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh----hHHhHHHHHHHhccCCChhHHHHHHHHHH
Q 000098 1408 EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1483 (2256)
Q Consensus 1408 ~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~----~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg 1483 (2256)
++.++.+.+|+..++|.++..++|+++.||.++.++++.++..+++. ....+++.+++.+.+.++++|..|+.+|+
T Consensus 388 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~ 467 (852)
T 4fdd_A 388 EGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFA 467 (852)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99887788999999999999999999999999999999998876542 35788999999999999999999999999
Q ss_pred HHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHH---hhhCCCChhHHH
Q 000098 1484 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLL---MGLTDPNDHTKY 1555 (2256)
Q Consensus 1484 ~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~Ll---~~l~d~~~~vr~ 1555 (2256)
.+++.++..+.++++.+++.+...+++.+......+..+++.++...++ ++++.++|.++ ..+.|++...+.
T Consensus 468 ~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~ 547 (852)
T 4fdd_A 468 TLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 547 (852)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHH
T ss_pred HHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 9999988888999999999999999888777777788888888866553 35678888877 455666655554
Q ss_pred HHHHHHhc-ccccCCChhhHhhHHHHHHHhhc-----------------CCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1556 SLDILLQT-TFVNTVDAPSLALLVPIVHRGLR-----------------ERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1556 al~~L~~~-~~~~~~~~~~l~~i~p~L~~~L~-----------------d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+++.+... ........+..+.+++.+...+. ..+.+.+..+...++.++..++ ..+.+|+
T Consensus 548 ~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~--~~~~~~~ 625 (852)
T 4fdd_A 548 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG--GNIEQLV 625 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG--GGGHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh--HhHHHHh
Confidence 44443321 11111112344444443332221 2245788888999999998664 4678887
Q ss_pred --hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1618 --GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1618 --~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
+.+++.+...+.|+.+.+|..+..+++.++..+|.+ |++.++|.+.+.+.. ....+|..++.+++.++..+|.+
T Consensus 626 ~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~-~~~~v~~~a~~alg~i~~~~~~~ 704 (852)
T 4fdd_A 626 ARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP-EFISVCNNATWAIGEISIQMGIE 704 (852)
T ss_dssp HTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT-TSHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHhhHh
Confidence 789999999999999999999999999999988865 667899999988854 56778999999999999998865
Q ss_pred ---HHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Q 000098 1693 ---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1693 ---~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d-~~~~VR~~Al~al~~iv~ 1766 (2256)
+...+++.++..++++ ...+++.++.++|.++...+..+.||++++++.++..+.+ .+...|+.+.+++..++.
T Consensus 705 ~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 705 MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 6678888888888775 5689999999999999997666779999999999998864 445578999999999988
Q ss_pred Hhhcc
Q 000098 1767 HYATT 1771 (2256)
Q Consensus 1767 ~~~~~ 1771 (2256)
.....
T Consensus 785 ~~p~~ 789 (852)
T 4fdd_A 785 VNPSG 789 (852)
T ss_dssp HCGGG
T ss_pred hChHh
Confidence 76653
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=4.7e-33 Score=397.10 Aligned_cols=741 Identities=15% Similarity=0.167 Sum_probs=543.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh----
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~---- 1207 (2256)
.++|..+.+++..+|+.|.+.|..+... .|+.+..+++.+.+ .+.+..+|..++..|++....
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~------------~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN------------PGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhC------------CCCCHHHHHHHHHHHHHhccccchH
Confidence 4567777788999999999999776543 23333333333321 113457899999999986531
Q ss_pred -----------hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHhhccCCChhhhhh
Q 000098 1208 -----------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1208 -----------~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
+..+....+.+.++ +++.+.++.+ ..+..+...+....++ +.|+.++|.+...+.+. + .+..
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll-~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~-~---~~~~ 145 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVL-HTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNP-N---STEH 145 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCT-T---CCHH
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHH-HHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCC-C---CCHH
Confidence 11112233444453 5788888888 7788887777766554 78999999999988752 1 0236
Q ss_pred hhhHHHHHHHHHHhhhccC--CcchHHHHHHHHHHcCCC--CHHHHHHHHHhhHHhHHhhcCch-----HH-HHHHHHHH
Q 000098 1276 VREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRLLDQ 1345 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~--~~~i~~il~~Ll~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~~-----~~-~l~~Ll~~ 1345 (2256)
+|..++..++.+++.+.+. .+.+..+++.+...+.++ ++.+|..+.+|+..++..++... .. +++.+..
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~- 224 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE- 224 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 8999999999999865321 345778888888889887 68999999999988776543221 12 3443333
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCcccchh-h-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc------------
Q 000098 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKK-Y-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------------ 1411 (2256)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~-~-~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~------------ 1411 (2256)
+..++++.+|..+..+|..++...+...... . .+++.+.+.+.+. +..+|..++..+..+++...
T Consensus 225 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 4456678999999999999998765322111 1 5777777766655 78899999999988887531
Q ss_pred ---------cCchHhHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHH
Q 000098 1412 ---------RLFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 1475 (2256)
Q Consensus 1412 ---------~~~~pyv~~llp~ll~~l~-------D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R 1475 (2256)
....+++..++|.++..+. |.+..+|.++..+++.++..++...+..++|.+.+.+.+.+|++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHH
Confidence 1224567788999888875 345689999999999999988866678899999999999999999
Q ss_pred HHHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH
Q 000098 1476 QSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2256)
Q Consensus 1476 ~~a~~~Lg~la~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr 1554 (2256)
.+++.++|.++.+.+ +.+..+++.++|.++..++|+++.||.+|+++++++++.++...
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-------------------- 443 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA-------------------- 443 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT--------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc--------------------
Confidence 999999999998876 66778899999999999999999999999999999998764310
Q ss_pred HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC------------CCCcchhhhhhhhH
Q 000098 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT------------EPKDMIPYIGLLLP 1622 (2256)
Q Consensus 1555 ~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~------------~~~~l~~~l~~Ll~ 1622 (2256)
...+.+..+++.+.+.+.+. +.+|..++.++++++...+ ....+.||++.++|
T Consensus 444 --------------~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~ 508 (876)
T 1qgr_A 444 --------------INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQ 508 (876)
T ss_dssp --------------SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHH
Confidence 00112334455555555553 6777788888888876543 12457899999999
Q ss_pred HHHHhhcCC---CHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhc----------CCC----HHHHHHHHHHH
Q 000098 1623 EVKKVLVDP---IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS----------DNS----NVERSGAAQGL 1682 (2256)
Q Consensus 1623 ~L~~~L~d~---~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~----------~~~----~~~R~~aa~~L 1682 (2256)
.+...+.+. .+.+|..+..+++.++...|.+ +...++|.+++.+.. +.+ ...|..++.++
T Consensus 509 ~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 588 (876)
T 1qgr_A 509 KLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATL 588 (876)
T ss_dssp HHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHH
Confidence 999999865 4689999999999999999876 345677777776653 111 23467778889
Q ss_pred HHHHHHhc-Hh---HHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC-CHHHHH
Q 000098 1683 SEVLAALG-TV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRD 1755 (2256)
Q Consensus 1683 ~~i~~~~g-~~---~l~~ll~~ll~~l~~~~--~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~-~~~VR~ 1755 (2256)
+.++..+| .. ++..++|.++..+.+.. +.+|+.++.+++.++...|..|.+|++.++|.+...+.+. ++.+|.
T Consensus 589 ~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~ 668 (876)
T 1qgr_A 589 QNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCL 668 (876)
T ss_dssp HHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99998888 43 56788888888887764 5799999999999999999999999999999999999887 788999
Q ss_pred HHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHH
Q 000098 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2256)
Q Consensus 1756 ~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~ 1835 (2256)
.+..++..++...+.. +.|.+
T Consensus 669 ~a~~~l~~l~~~~~~~----~~~~~------------------------------------------------------- 689 (876)
T 1qgr_A 669 AAVGLVGDLCRALQSN----IIPFC------------------------------------------------------- 689 (876)
T ss_dssp HHHHHHHHHHHHHGGG----GHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHh----hhhhH-------------------------------------------------------
Confidence 9888888887765532 11111
Q ss_pred HhcchhhHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCC-----------HHHH
Q 000098 1836 VLGRDKRNEVLAALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERR 1902 (2256)
Q Consensus 1836 ~Lg~e~~~~vl~~L~~~~~D--~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-----------~~~R 1902 (2256)
+.++..+...+.+ .+..+|..++.+++.++...+..+.+++|.+++.+...+.... ..+|
T Consensus 690 -------~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 690 -------DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp -------HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 0111112222221 2344777888888888877777788899999998888776442 2788
Q ss_pred HHHHHHHHHHHHhhCc---------c----chhchHHHHhhhcCCC--ChhhHHhHHHHHHHHHHhhChhhhHhh-HhhH
Q 000098 1903 QVAGRALGELVRKLGE---------R----VLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSF-MDEL 1966 (2256)
Q Consensus 1903 ~~A~~aL~~lv~~~~~---------~----~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~-l~~l 1966 (2256)
..+..+++.++..++. . +++.+++.+.....++ +..+|..++.+++.++...|...+.+| .+.+
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 842 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPM 842 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHH
Confidence 8999999999887653 1 3455666555555666 678999999999999999887456677 4677
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Q 000098 1967 IPTIRT-ALCDSILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1967 i~~l~~-~L~D~~~~VR~~A~~al~~l~~ 1994 (2256)
++.+.. ++.|+++++|.+|+.+++.+.+
T Consensus 843 i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 843 IHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 887777 8999999999999999999875
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.9e-31 Score=380.63 Aligned_cols=685 Identities=17% Similarity=0.166 Sum_probs=525.3
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-hhHHhHHHHHHHhccCC--ChhHHHHHHHHHHHHHhhC-hhh
Q 000098 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCA-PQQ 1492 (2256)
Q Consensus 1417 yv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-~~v~~ilp~Ll~~L~~~--~w~~R~~a~~~Lg~la~~~-p~~ 1492 (2256)
....+.+.++..+.++++.+ ..+..++..++....+ ..++.++|.+.+.+.+. ++.+|.+++.+++.+++.. ++.
T Consensus 87 ~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (876)
T 1qgr_A 87 ARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (876)
T ss_dssp HHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh
Confidence 34456667778888888778 8888899988876543 55788999999999988 9999999999999999875 666
Q ss_pred HhhhhhhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCC
Q 000098 1493 LSQCLPKIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2256)
Q Consensus 1493 l~~~L~~Ivp~L~~~L~D~--~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~ 1570 (2256)
+..+++.+++.+..++.|+ ++.||..|.+++..+...++.. +. ...
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~-------------~~~------------------ 213 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FD-------------KES------------------ 213 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HT-------------SHH------------------
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HH-------------hHH------------------
Confidence 7788899999999999987 6899999999999887643211 10 000
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh-hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~-~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
....+++.+...+.+.++++|..++.+++.++.. .++.+.+|+. .+++.+...+.+.++.+|..++..+..+++.
T Consensus 214 --~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 214 --ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp --HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 0012455556666677789999999999999874 3456788888 9999999999999999999999999988865
Q ss_pred hC------------------c--C----chHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHH
Q 000098 1650 MG------------------E--E----NFPDLVSWLLDALKS------DNSNVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2256)
Q Consensus 1650 ~g------------------~--~----~~~~lip~Ll~~L~~------~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~ 1699 (2256)
.. . . +...++|.+++.+.. +.++.+|..++.+++.++..+|...++.+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~ 369 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP 369 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHH
Confidence 20 0 1 235788888888863 2356789999999999999999777888999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhHhhhC-hhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc-----cch
Q 000098 1700 DIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT-----TSL 1773 (2256)
Q Consensus 1700 ~ll~~l~~~~~~vR~~al~~l~~La~~~g-~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~-----~~~ 1773 (2256)
.+...+.+++|.+|.+++.+++.++...+ ..+.+|++.++|.++..+.|+++.||..|+.++..+...++. ..+
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 99999999999999999999999998887 567889999999999999999999999999999999887654 345
Q ss_pred hchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHh
Q 000098 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2256)
Q Consensus 1774 ~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~ 1853 (2256)
+.++|.+...+.+. .++|..++.+++.+......... ..+++.....+ .+ ..+.+.+++.|....
T Consensus 450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~-----~~~~~~~~~~~--------~l-~~~~~~il~~L~~~l 514 (876)
T 1qgr_A 450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAAD-----VADDQEEPATY--------CL-SSSFELIVQKLLETT 514 (876)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTS-----CTTSCCCCCCC--------SS-TTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccc-----cccccccccch--------hh-hHhHHHHHHHHHHHH
Confidence 67889999888775 89999999999988743210000 00000000000 00 113345667776665
Q ss_pred cCC---cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-----------CC----HHHHHHHHHHHHHHHHh
Q 000098 1854 SDV---SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-----------SS----SERRQVAGRALGELVRK 1915 (2256)
Q Consensus 1854 ~D~---~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-----------~~----~~~R~~A~~aL~~lv~~ 1915 (2256)
.+. ...+|..++.+++.++...+....++++.+++.++..+.+ .+ +++|..+..+++.++..
T Consensus 515 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~ 594 (876)
T 1qgr_A 515 DRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594 (876)
T ss_dssp TSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3568999999999999887766666777777766655542 12 45678899999999998
Q ss_pred hC-cc---chhchHHHHhhhcCCCC--hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCC-CHHHHHHHHHH
Q 000098 1916 LG-ER---VLPSIIPILSRGLKDPS--ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLA 1988 (2256)
Q Consensus 1916 ~~-~~---~l~~llp~L~~~l~d~~--~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~-~~~VR~~A~~a 1988 (2256)
+| .. +++.++|.+.+.+.+.. +.+|..++.+++.++...+. .+.+|++.+++.+...+.+. ++++|..|..+
T Consensus 595 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~ 673 (876)
T 1qgr_A 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG-EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGL 673 (876)
T ss_dssp SCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred hChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 88 43 67888999988887653 46888999999999887664 46789999999999999887 89999999999
Q ss_pred HHHHHHHhchh---hHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhC
Q 000098 1989 FSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065 (2256)
Q Consensus 1989 l~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g 2065 (2256)
++.+....|.. +++++++.+++.|.+++.. .........+++.++...|
T Consensus 674 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~----------------------------~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 674 VGDLCRALQSNIIPFCDEVMQLLLENLGNENVH----------------------------RSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSC----------------------------GGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhCCcccc----------------------------HHhhHHHHHHHHHHHHHhc
Confidence 99999887753 3456666666666542110 0011235677888888889
Q ss_pred CCccccHhhHHHHHHHhhCCCC-----------HHHHHHHHHHHHHHHhhcch-------------hcHHHHHHHHHhhc
Q 000098 2066 PGLNFHLGTILPALLSAMGDDD-----------MDVQSLAKEAAETVTLVIDE-------------EGVESLVSELLKGV 2121 (2256)
Q Consensus 2066 ~~l~~~l~~Ilp~Ll~~l~~~~-----------~~vr~~a~~al~~l~~~~~~-------------~~~~~ll~~Ll~~l 2121 (2256)
+.+.+|++.++|.+.+.+..+. ..+|..+..++..++...+. ++++.+++.+....
T Consensus 726 ~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 805 (876)
T 1qgr_A 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA 805 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999886442 26888899999988876532 34566666665555
Q ss_pred CCC--ChhhHHHHHHHHHHHHHhchh-hhhhh-HHHHHHHHHH-HcCCCChHHHHHHHHHHHHhhc
Q 000098 2122 GDN--QASIRRSSAYLIGYFYKNSKL-YLVDE-APNMISTLIV-LLSDSDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2122 ~~~--~~~vR~~A~~~l~~l~~~~~~-~~~~y-~~~il~~L~~-~l~D~d~~Vr~~A~~aL~~l~~ 2182 (2256)
.++ +..+|..|+.++|.++...+. .+.+| ...++++++. .++|+++.||.+|.+|++.+.+
T Consensus 806 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 806 GDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 676 689999999999999998887 88888 6788999999 9999999999999999999875
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=4.1e-33 Score=378.88 Aligned_cols=566 Identities=19% Similarity=0.220 Sum_probs=454.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py 1417 (2256)
.+..++..+.+ +++.+|..|+..++.++...|+... ...+++.+.+.. + +++.+|..+..+++.+....+. ..|
T Consensus 11 ~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~-~~~l~~~L~~~~-d-~~~~vr~~~~~~L~~~~~~~~~--~~~ 84 (588)
T 1b3u_A 11 PIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERT-RSELLPFLTDTI-Y-DEDEVLLALAEQLGTFTTLVGG--PEY 84 (588)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHH-HHTHHHHHHHTC-C-CCHHHHHHHHHHHTTCSGGGTS--GGG
T ss_pred cHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHH-HHHHHHHHHHhc-C-CcHHHHHHHHHHHHHHHhccCc--HHH
Confidence 46667777754 4589999999999999887776433 236888887765 3 3788888887777766555443 346
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
...++|.+...+.|+++.||+.|..++..++..+++..+ ..++|.+.+...+++|..|..++.+++.++...+.. .
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~ 161 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V 161 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H
Confidence 677888888888999999999999999999998887665 456777777777888999999999999998877654 3
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhh
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~ 1576 (2256)
.+.++|.+..+++|+++.||..|+.+|+.+++.++.+.. ...
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--------------------------------------~~~ 203 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------KSE 203 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------HHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--------------------------------------HHH
Confidence 468899999999999999999999999999987764321 122
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-ch
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF 1655 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-~~ 1655 (2256)
++|.+...+.|.++.+|..|+..++.++..++. ..+.+.++|.+...+.|++|.+|..++.+++.++...|++ +.
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccch
Confidence 445555555666677888888888888775321 2345668888888899999999999999999999888765 34
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1656 ~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
+.++|.+.+.+.+ +++.+|..++.+++.++..+|.+ +.+.++|.+...++++++.+|..++.+++.++..+|..
T Consensus 280 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 6788888888775 67779999999999999988764 56788999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 000098 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~ 1809 (2256)
. +.+.++|.+...+.|+++.||..++.++..+...++... .+.++|.+.+.+.|.+|++|..+++.++.+..
T Consensus 359 ~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~----- 431 (588)
T 1b3u_A 359 N--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG----- 431 (588)
T ss_dssp H--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----
T ss_pred H--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-----
Confidence 4 467789999999999999999999999999888766443 35689999999999999999999999988752
Q ss_pred CccccccCCCCCCCcchHHHHHHHHHHhcchhh-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 000098 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR-NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2256)
Q Consensus 1810 ~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~-~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~ 1888 (2256)
.+|.+.+ +.+++.+...+.|.+..||..|+..++.++...+.. .+++.+++
T Consensus 432 --------------------------~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp 483 (588)
T 1b3u_A 432 --------------------------QLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp --------------------------HHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred --------------------------HcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 2232222 346667777788999999999999999998765543 24566666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHH
Q 000098 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2256)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li 1967 (2256)
.+...+.++++.+|..++.+++.++..+|.. +.+.++|.+.+.+.|+++++|..++.+++.+....|.... .+.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~ 560 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHH
Confidence 6767778899999999999999999988765 6789999999999999999999999999999988876532 25688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1968 PTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1968 ~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
|.+...+.|++++||..|..+++.+.
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 88888889999999999999988753
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=4.4e-31 Score=358.86 Aligned_cols=556 Identities=16% Similarity=0.198 Sum_probs=453.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHH
Q 000098 1223 RALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301 (2256)
Q Consensus 1223 ~~l~D~~~~VR~~a~~a~~~~i~~~g~~-~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~i 1301 (2256)
..+.++++.+|..+..+...+....|++ .++.++|.+...+ + .++.+|..+...++.++.+++.. .+...+
T Consensus 17 ~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-----d--~~~~vr~~~~~~L~~~~~~~~~~-~~~~~l 88 (588)
T 1b3u_A 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-----Y--DEDEVLLALAEQLGTFTTLVGGP-EYVHCL 88 (588)
T ss_dssp HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-----C--CCHHHHHHHHHHHTTCSGGGTSG-GGGGGG
T ss_pred HHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-----C--CcHHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 5788999999999998887777666643 4677888886653 1 12368898999998888776432 235556
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHH
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il 1380 (2256)
++.+...+.++++.||..+..+|..+.....+ .....+..++..+.+++++..|..|+..++.++...+.... ..++
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~--~~l~ 166 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK--AELR 166 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH--HHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 77777777889999999999999988876543 23444556666777777899999999999999887764332 3688
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhH
Q 000098 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLV 1459 (2256)
Q Consensus 1381 ~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~i 1459 (2256)
+.+.+.+.++ ++.+|..++.+++.+++..+. +.+...++|.+...++|+++.||..|..+++.++..++++.. +.+
T Consensus 167 ~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 167 QYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888887766 899999999999999988774 456778999999999999999999999999999988876554 678
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-----h
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----E 1534 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-----~ 1534 (2256)
+|.+...+.|++|++|..++.+||.++...+... ..+.++|.+..+++|+++.||..|+.+++.+++.++.. .
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 8999899999999999999999999998764432 34678999999999999999999999999999988653 4
Q ss_pred HHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCC-ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000098 1535 IASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTV-DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~-~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~ 1612 (2256)
...++|.+...+.|++..+|. +...+.... ... .......++|.+...++|.++++|..++..++.++..++.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~--~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--- 396 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLS--PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--- 396 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH--HHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---
Confidence 588999999999999999985 344433310 000 1123456889999999999999999999999988875421
Q ss_pred chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~-~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
..+.+.++|.+...+.|++|.+|..++.+++.++..+|.++ .+.++|.++..+.+ .+..+|..++.+++.++..+|.
T Consensus 397 -~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 397 -RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp -HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCc
Confidence 23557789999999999999999999999999999998764 45789999888875 5677999999999999999998
Q ss_pred h-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1692 V-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1692 ~-~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
+ +.+.++|.+.....++++.+|..++.+++.++..+|..+ |.+.++|.++..+.|++++||..+++++..+...++.
T Consensus 475 ~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 475 EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 7 457899999988889999999999999999999988764 8899999999999999999999999999999877766
Q ss_pred cch-hchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1771 TSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1771 ~~~-~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
... +.++|.+.+...|.+|.+|..+.+.++.+
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 543 46888888888999999999999988765
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=7.9e-22 Score=266.29 Aligned_cols=311 Identities=26% Similarity=0.471 Sum_probs=282.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cCc
Q 000098 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLF 1414 (2256)
Q Consensus 1337 ~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~--~~~ 1414 (2256)
..+..+++.+..++ ...|+.++..++.++.+.+......+.++..+.+.+.++++. |+|+.++..|++..+ ..+
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCc
Confidence 34555666666554 566888999999998865444333457899999999888666 999999999997765 478
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccC-CChhHHHHHHHHHHHHHhhChhhH
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~-~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
+||+-.++|.++..++|....||++|..++..++..++++.++.++|.++..+.+ ..|++|.+|+.+++.++..+|+++
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999999999985 479999999999999999999999
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhh
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~ 1573 (2256)
...+|+++|.+.+++.|..++|..+|..++..+|..+.|..+..++|.|++++.+| +.+.+|++.|..++|+..++.|.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHHH
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecchh
Confidence 99999999999999999999999999999999999999999999999999999999 45889999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
++.++|+|.++|.+++..++++++.++.|||+++.++.+..||++.|+|.+..... -.+|++|+.+.+|+..+.+..+.
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999776 46899999999999999876553
No 12
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.87 E-value=8.1e-19 Score=251.84 Aligned_cols=718 Identities=12% Similarity=0.122 Sum_probs=420.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhhcCCCC
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~~~~~~ 1128 (2256)
.++.+++..+.+||++.|++|++.|+++... |....+...+ ...+.+.++|-+|.. .|..+..+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~-----p~~w~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS-----PQAWQFSWQL--MQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS-----THHHHHHHHH--TCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 4566778888999999999999999987522 3222233333 344567777776554 455555444
Q ss_pred CCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHH
Q 000098 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2256)
Q Consensus 1129 ~~~~-~~ll~~l~~---~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~ 1203 (2256)
+..+ ..+++.+.+ ....||.+.+++++.++.. || .|++++..+.+....... + .-++...+..+...|..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~---~-~~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRM---P-NVSADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcccc---c-cCCCHHHHHHHHHHHHH
Confidence 4445 677776653 3689999999999999864 77 888888888876432100 0 00122356777777776
Q ss_pred hhh-hhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCC--ChhhhhhhhhHH
Q 000098 1204 AAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGV 1280 (2256)
Q Consensus 1204 l~~-~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~--~~~~~~~vr~~a 1280 (2256)
+++ ++..+ -.++...++.. +. ...+.+++.+..++..... .+.....++..+
T Consensus 155 l~EEi~~~~-------------~~~~r~~~~~~--------l~----~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~a 209 (971)
T 2x1g_F 155 IPEEAQVIH-------------TSVKRVVLRAE--------IA----KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRA 209 (971)
T ss_dssp HHHHHHHCC-------------CSSCHHHHHHH--------HH----TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred hHHHHhccC-------------cHHHHHHHHHH--------HH----HHHHHHHHHHHHHHhcccCCCCCccchhHHHHH
Confidence 664 22110 00111111111 11 1244555666666653211 111122577788
Q ss_pred HHHHHHHHh--hhccCCcchHHHHHHHHHHc----------------CCCCHHHHHHHHHhhHHhHHhhc-Cc----hHH
Q 000098 1281 VIFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APT 1337 (2256)
Q Consensus 1281 v~~L~~La~--~l~~~~~~i~~il~~Ll~~L----------------~~~~~~Vq~~~~~~L~~lv~~~~-~~----~~~ 1337 (2256)
+.+++.... .++.. ....+++.++. | .++++.+++.+.+|+..++.... .+ +..
T Consensus 210 l~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~ 286 (971)
T 2x1g_F 210 VKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFV 286 (971)
T ss_dssp HHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHH
T ss_pred HHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHH
Confidence 888876655 33322 23456665655 4 11456788899999998886421 11 223
Q ss_pred HHHHHHHH---Hh---cCCCH---HHHHHHHHHHHHHHhhhCcc-----------cch-hhcHHHHHHHHHhC----CCC
Q 000098 1338 LVSRLLDQ---LM---KSDKY---GERRGAAFGLAGVVKGFGIS-----------SLK-KYGIAATLREGLAD----RNS 1392 (2256)
Q Consensus 1338 ~l~~Ll~~---L~---~~~~~---~vR~~Aa~~L~~lv~~~g~~-----------~~~-~~~il~~L~~~l~~----~~~ 1392 (2256)
+++.++.. +. .+++. ...+..+..+..+....... ... -..+++.+.+.... ..+
T Consensus 287 l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 366 (971)
T 2x1g_F 287 LIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVE 366 (971)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTT
T ss_pred HHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcc
Confidence 33333321 11 22232 44555555555555321100 000 11455555555433 235
Q ss_pred HHHHHHHHHHHHHHHHHh-c-----------cCchHhHHHHHHHHHHHcC---CC-----c-------HHHHHHHHHHHH
Q 000098 1393 AKRREGALLAFECLCEKL-G-----------RLFEPYVIQMLPLLLVAFS---DQ-----V-------VAVREAAECAAR 1445 (2256)
Q Consensus 1393 ~~~Re~al~al~~L~~~l-~-----------~~~~pyv~~llp~ll~~l~---D~-----~-------~~VR~aa~~al~ 1445 (2256)
..++..++..|..+++.. + ..+.|++.++++.++..+. |. + ...|.++.+++.
T Consensus 367 ~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~ 446 (971)
T 2x1g_F 367 ESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFM 446 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHH
Confidence 677888888888887732 1 2346778888888887763 11 1 146778888888
Q ss_pred HHHhhhhHhhHHhHHHHHHHhccC-----CChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh-cCCCHHHHHHH
Q 000098 1446 AMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSAG 1519 (2256)
Q Consensus 1446 ~l~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L-~D~~~~VR~aA 1519 (2256)
.++..++...+..+++.+.+.+.+ .+|+.|.+++.++|.+++++++.....++.+++.+..+. .|.++.||..+
T Consensus 447 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 447 YCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 888777755556677766666654 799999999999999999988766678888888444433 26799999999
Q ss_pred HHHHHHHHhhcCch--hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1520 QTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1520 ~~aL~~l~~~i~~~--~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
+++++++++.+... ++.. ++|.+.+++ + +.++..|+
T Consensus 527 ~~~l~~~~~~l~~~~~~l~~---------------------------------------vl~~l~~~l-~--~~v~~~A~ 564 (971)
T 2x1g_F 527 LETMGSYCNWLMENPAYIPP---------------------------------------AINLLVRGL-N--SSMSAQAT 564 (971)
T ss_dssp HHHHHHTHHHHC----CHHH---------------------------------------HHHHHHHHH-H--SSCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHH---------------------------------------HHHHHHHHh-C--hHHHHHHH
Confidence 99999999876521 2233 334444444 2 46778888
Q ss_pred HHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhh----
Q 000098 1598 QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK---- 1667 (2256)
Q Consensus 1598 ~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~---- 1667 (2256)
.++.++++.. ...+.||++.++..+...+.. .....+..+.++++.++...+++ ++..+++.+++.+.
T Consensus 565 ~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 642 (971)
T 2x1g_F 565 LGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQ 642 (971)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8898888743 356889999999999999987 46789999999999999877633 45555555555443
Q ss_pred cCC-CHHHHHHHH---HHHHHHHHHhcH----------------hHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhHh
Q 000098 1668 SDN-SNVERSGAA---QGLSEVLAALGT----------------VYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPR 1725 (2256)
Q Consensus 1668 ~~~-~~~~R~~aa---~~L~~i~~~~g~----------------~~l~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~ 1725 (2256)
+.. +...+.... ..++.++.+++. .+.+.++|.+...+.+ .+..+.+.++.+++.++.
T Consensus 643 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 643 ADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp C---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 221 222333333 345555555542 1356677776666543 367899999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc-chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2256)
Q Consensus 1726 ~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~-~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~ 1804 (2256)
.+|.+|.||++.+++.++..+..... ..++..+..++..++.+ .....+..+ +..+..
T Consensus 723 ~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~------------------~~~~~~ 781 (971)
T 2x1g_F 723 NLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQL------------------LREFIQ 781 (971)
T ss_dssp HHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHH------------------HHHHHH
T ss_pred hhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHH------------------HHHHHH
Confidence 99999999999999999988875421 23556666666666542 011111111 111000
Q ss_pred hhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHH--HH
Q 000098 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EI 1882 (2256)
Q Consensus 1805 ~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~--~~ 1882 (2256)
.+...+..-. .. ..+...++++.....+..+..+.|..+. +.
T Consensus 782 ---------------------------~~~~~l~~~~-~~--------~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~ 825 (971)
T 2x1g_F 782 ---------------------------HSFKLFESTP-EQ--------NFSNISDTMETFFGCLTQIIKKIPQVLEDKTL 825 (971)
T ss_dssp ---------------------------HHHHHHTSCT-TT--------HHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTS
T ss_pred ---------------------------HHHHHHhccc-cc--------CCccCchHHHHHHHHHHHHHHhCcHHHcCCcc
Confidence 0000000000 00 0011356788888888888888886654 66
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1883 -MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2256)
Q Consensus 1883 -l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~ 1915 (2256)
++.+++..+..+..++......+...+..++..
T Consensus 826 ~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 826 AYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp CHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 788888887777766666666777788777665
No 13
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.87 E-value=5.1e-18 Score=242.25 Aligned_cols=729 Identities=11% Similarity=0.118 Sum_probs=396.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhh-----
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDR----- 1123 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~----- 1123 (2256)
+++.++|.+++|||+++| |++.|++.. ..|.....+..+. +..+.+.++|.+|.. .|..
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-----~~p~~~~~L~~il-~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-----TQDGFGLTLLHVI-ASTNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-----TSTTHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-----cCCCHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 468889999999999999 999998764 1133333344443 334457778877654 5542
Q ss_pred -cCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHH
Q 000098 1124 -YGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2256)
Q Consensus 1124 -~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2256)
...+.+..+ ..+++.+.++...+|..++++++.++. .+|+.|+++++.|.+... ..+...++++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~----------s~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLS----------NDDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCC----------SSCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhC----------CCCHHHHHHHHHH
Confidence 111222334 678888777779999999999999986 488889999999887521 1234578888988
Q ss_pred HHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHH---hhccCCChhhh---h
Q 000098 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY---LNKKASDEEKY---D 1274 (2256)
Q Consensus 1201 L~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~---L~~~~~~~~~~---~ 1274 (2256)
+..+.+.+.... .+++.+...-. ++... ...++..+... +.+..++.... .
T Consensus 147 l~~i~~~~~~~~---------------~~~~~~~~l~~----~l~~~----~~~ll~~~~~~~~~l~~~~~~~~~~~~~~ 203 (960)
T 1wa5_C 147 AHSIFKRWRPLF---------------RSDELFLEIKL----VLDVF----TAPFLNLLKTVDEQITANENNKASLNILF 203 (960)
T ss_dssp HHHHHGGGTTSC---------------CCHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHTTCCC--CHHHHHHH
T ss_pred HHHHHHHHHHhh---------------cChHHHHHHHH----HHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888876433210 01111111100 00000 11112222111 22100000000 0
Q ss_pred hhhhHHHHHHHHHHhh-hccC-CcchHHHHHHHHHHcCC--C------C-------HHHHHHHHHhhHHhHHhhcCchHH
Q 000098 1275 LVREGVVIFTGALAKH-LAKD-DPKVHAVVDKLLDVLNT--P------S-------EAVQRAVSSCLSPLMQSMQDEAPT 1337 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~-l~~~-~~~i~~il~~Ll~~L~~--~------~-------~~Vq~~~~~~L~~lv~~~~~~~~~ 1337 (2256)
.+...++.++..+..+ ++.. ...+...++.+...+.. | + +.++..+.+++..++..+.+.+..
T Consensus 204 ~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~ 283 (960)
T 1wa5_C 204 DVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP 283 (960)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111122222222110 0000 00122233333332211 0 0 235566666666665544333333
Q ss_pred HHHHHHH----HHhc----CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000098 1338 LVSRLLD----QLMK----SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2256)
Q Consensus 1338 ~l~~Ll~----~L~~----~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~ 1409 (2256)
+++.+++ .+.+ .....++..+...+..+++.-.
T Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~--------------------------------------- 324 (960)
T 1wa5_C 284 MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK--------------------------------------- 324 (960)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh---------------------------------------
Confidence 3333222 2211 1123344444444444332110
Q ss_pred hccCch--HhHHHHH-HHHHHHc-----------------------CCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHH
Q 000098 1410 LGRLFE--PYVIQML-PLLLVAF-----------------------SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463 (2256)
Q Consensus 1410 l~~~~~--pyv~~ll-p~ll~~l-----------------------~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~L 1463 (2256)
....|. +|+.+++ +.++..+ ++....+|.+|...++.++...+...+..+++.+
T Consensus 325 ~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i 404 (960)
T 1wa5_C 325 YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHM 404 (960)
T ss_dssp HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 001111 3333333 2222221 2233468999999999999988865567777777
Q ss_pred HHhcc------CCChhHHHHHHHHHHHHHhhC--hh-hHhh-----hhhhH-HHHHHHhhcCC---CHHHHHHHHHHHHH
Q 000098 1464 LKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEVLTDT---HPKVQSAGQTALQQ 1525 (2256)
Q Consensus 1464 l~~L~------~~~w~~R~~a~~~Lg~la~~~--p~-~l~~-----~L~~I-vp~L~~~L~D~---~~~VR~aA~~aL~~ 1525 (2256)
.+.+. +.+|+.|.+|+.++|.++... ++ .... .+..+ ...+.+.+.|+ ++.||..|++++++
T Consensus 405 ~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~ 484 (960)
T 1wa5_C 405 KGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYT 484 (960)
T ss_dssp HHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHH
Confidence 66665 678999999999999998642 11 1111 22222 23345566777 99999999999999
Q ss_pred HHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1526 l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
+++.+....+..+ ++.+.+++.+.+..+|..|+.++.++++
T Consensus 485 ~~~~~~~~~l~~~---------------------------------------l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 485 FRNQLTKAQLIEL---------------------------------------MPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp TGGGSCHHHHHHH---------------------------------------HHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHhhCCHHHHHHH---------------------------------------HHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 9987633233433 4444455555566888889999999887
Q ss_pred hcC---------CCCcchhhhhhhhHHHHHhhcCCC---H--HHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhc
Q 000098 1606 LVT---------EPKDMIPYIGLLLPEVKKVLVDPI---P--EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1606 ~l~---------~~~~l~~~l~~Ll~~L~~~L~d~~---~--~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~ 1668 (2256)
... ....+.||++.+++.|..++.... . ...+.+..+++.++...+++ |++.+++.+...+..
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~ 605 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTI 605 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 422 134588999999999999988641 1 14468899999999988765 556677777666543
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHH
Q 000098 1669 ----DNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2256)
Q Consensus 1669 ----~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp 1740 (2256)
..+...+.....+++.++...+++ +.+.++|.+...++.......+.++..++.+.... ..|.+|+..++|
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~ 684 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQ 684 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 344456666778888888875544 34566777666666555556666777777666554 556666666777
Q ss_pred HHH--HhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCC
Q 000098 1741 AIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818 (2256)
Q Consensus 1741 ~Ll--~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~ 1818 (2256)
.++ ..+.... .+ ....+.+..++...... +.. +
T Consensus 685 ~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~------------~~~--~----------------------------- 719 (960)
T 1wa5_C 685 PLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI------------FPD--L----------------------------- 719 (960)
T ss_dssp HHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG------------CSC--S-----------------------------
T ss_pred HHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH------------HHH--H-----------------------------
Confidence 666 5544321 11 11222222222111100 000 0
Q ss_pred CCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHhcCC
Q 000098 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-LKEIMPVLMNTLISSLASS 1897 (2256)
Q Consensus 1819 ~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~-l~~~l~~Ll~~L~~~L~~~ 1897 (2256)
+.++..+.....+.. ....+...++.++.+++.. +.+++|.+++.+...+..+
T Consensus 720 ------------------------~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 720 ------------------------VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp ------------------------HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred ------------------------HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 001111111122221 1356777888888888887 9999999999999888765
Q ss_pred -CHHHHHHHHHHHHHHHHhhCccchhc---------hHH----HHhhhcCC-CChhhHHhHHHHHHHHHHhh--ChhhhH
Q 000098 1898 -SSERRQVAGRALGELVRKLGERVLPS---------IIP----ILSRGLKD-PSASRRQGVCIGLSEVMASA--GKSQLL 1960 (2256)
Q Consensus 1898 -~~~~R~~A~~aL~~lv~~~~~~~l~~---------llp----~L~~~l~d-~~~~vR~~a~~aL~eii~~~--~~~~l~ 1960 (2256)
....+......++.++-.++....-. +.. .+...+.. .....|..++.++..++... .+..+.
T Consensus 774 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~ 853 (960)
T 1wa5_C 774 KTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYP 853 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCG
T ss_pred CcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHH
Confidence 35555555555555554444431100 111 11111111 13556777777777776543 022233
Q ss_pred hhHhhHHHHHHHHhcC
Q 000098 1961 SFMDELIPTIRTALCD 1976 (2256)
Q Consensus 1961 ~~l~~li~~l~~~L~D 1976 (2256)
+.+..++..+...+..
T Consensus 854 ~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 854 TLISSTMNSIIETASS 869 (960)
T ss_dssp GGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4445555555554443
No 14
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.86 E-value=8.4e-18 Score=241.52 Aligned_cols=699 Identities=14% Similarity=0.138 Sum_probs=420.1
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhhcCCC
Q 000098 1057 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYD 1127 (2256)
Q Consensus 1057 ~~~~~ll~~-~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~~~~~ 1127 (2256)
.++.+++.. ..+||++.|++|++.|++.... |....+...+ ...+.+.++|-+|.. .|..+..+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQL--LQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHH--TSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHH--hcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 457778888 4569999999999999876421 2222233333 334567777776554 46555544
Q ss_pred CCCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHH
Q 000098 1128 FGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202 (2256)
Q Consensus 1128 ~~~~~-~~ll~~l~~---~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~ 1202 (2256)
-+..+ ..+++.+.+ ....+|.+.+++++.++. .||+.|++++..|.+..... .+ ..++...+..+...|.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~----~~-~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAE----DS-PVDGQGRCLALLELLT 171 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhh----cc-CCCcHHHHHHHHHHHH
Confidence 44445 677776654 369999999999999985 58888888888888763210 00 0012246778888888
Q ss_pred Hhhh-hhcc---------------CChhHhHHHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhccccc--cchHHHHHHH
Q 000098 1203 SAAD-VLRT---------------KDLPVIMTFLISRALADTN--ADVRGRMLNAGIMIIDKHGRDNV--SLLFPIFENY 1262 (2256)
Q Consensus 1203 ~l~~-~~~~---------------~~~~~l~~~lv~~~l~D~~--~~VR~~a~~a~~~~i~~~g~~~~--~~Ll~~l~~~ 1262 (2256)
.+.+ .+.. ...+.+++.+ ...+.+.+ ..++..+++|....+. .+.... ..+++.+.++
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll-~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~ 249 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLL-EQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAA 249 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHH-HHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHH
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHH
Confidence 8774 3211 1123344444 34444432 2477777777766655 332222 4556655555
Q ss_pred hhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHH
Q 000098 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRL 1342 (2256)
Q Consensus 1263 L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~L 1342 (2256)
+.. ..+|+.++.++..+...-.+ +.....+..++..+-+..+ .+
T Consensus 250 l~~--------~~~~~~a~~~l~~i~~~~~~--~~~~~~~~~l~~~~~~~~~--------------------------~~ 293 (963)
T 2x19_B 250 LQD--------SELFDSSVEAIVNAISQPDA--QRYVNTLLKLIPLVLGLQE--------------------------QL 293 (963)
T ss_dssp TTS--------TTTHHHHHHHHHHHHTCTTG--GGCHHHHHHHHHHHHTTHH--------------------------HH
T ss_pred hCC--------chHHHHHHHHHHHHHccccc--ccCHHHHHHHHHHHHhhHH--------------------------HH
Confidence 432 14677888888777653211 1112222222221110000 00
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhC---------cccchhhcHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHH
Q 000098 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFG---------ISSLKKYGIAATLREGLAD----RNSAKRREGALLAFECLCEK 1409 (2256)
Q Consensus 1343 l~~L~~~~~~~vR~~Aa~~L~~lv~~~g---------~~~~~~~~il~~L~~~l~~----~~~~~~Re~al~al~~L~~~ 1409 (2256)
...+.. .+....+..+..+..+..... ...+ ..+++.+.+...+ ..+..++..++..+..+++.
T Consensus 294 ~~~~~~-~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~ 370 (963)
T 2x19_B 294 RQAVQN-GDMETSHGICRIAVALGENHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDD 370 (963)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHH
Confidence 000111 112222222223322221110 0111 1344444444443 12334455566666666652
Q ss_pred h-----------ccCchHhHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHHhhhhHhhHHhHHHHH
Q 000098 1410 L-----------GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSL 1463 (2256)
Q Consensus 1410 l-----------~~~~~pyv~~llp~ll~~l~D~~~---------------~VR~aa~~al~~l~~~l~~~~v~~ilp~L 1463 (2256)
. ...+.|++.++++.++..+.-+++ ..|.++.+++..++...+...+..+++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l 450 (963)
T 2x19_B 371 ILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKL 450 (963)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 2 124567888888888776632211 23667777888877766655556667766
Q ss_pred HHhc----cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHh
Q 000098 1464 LKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIAS 1537 (2256)
Q Consensus 1464 l~~L----~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i~~ 1537 (2256)
.+.+ .+.+|+.|.+++.++|.+++++.+.....++.+++.+. .+.++++.||..++++++++++.+.. +++..
T Consensus 451 ~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~ 529 (963)
T 2x19_B 451 GRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINS 529 (963)
T ss_dssp HHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTT
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 6666 66899999999999999999987655566777777544 34556899999999999999876532 12233
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1538 lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+++.+..++.+ +.++..|+.++.++++. ....+.||+
T Consensus 530 ---------------------------------------vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~ 566 (963)
T 2x19_B 530 ---------------------------------------VLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYA 566 (963)
T ss_dssp ---------------------------------------THHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTH
T ss_pred ---------------------------------------HHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhH
Confidence 34444444443 56778888899999874 335688999
Q ss_pred hhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhC-cC---chHHHHHHHHHHhhc----CCCHHHHH---HHHHHHHH
Q 000098 1618 GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMG-EE---NFPDLVSWLLDALKS----DNSNVERS---GAAQGLSE 1684 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g-~~---~~~~lip~Ll~~L~~----~~~~~~R~---~aa~~L~~ 1684 (2256)
+.++..+...+.. .....|..+.++++.++...+ ++ ++..+++.+.+.+.. ..+...+. ....+++.
T Consensus 567 ~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 567 ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998875 467899999999999998776 22 455666666555432 22333333 34456777
Q ss_pred HHHHhcH---------------------h----HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhHhhhChhHHHHHHH
Q 000098 1685 VLAALGT---------------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2256)
Q Consensus 1685 i~~~~g~---------------------~----~l~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~~f~~yl~~ 1737 (2256)
+.++++. + .++.++|.+...+.. .+..+++.++.+++.++..+|+.|.||++.
T Consensus 647 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~ 726 (963)
T 2x19_B 647 LFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ 726 (963)
T ss_dssp HHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHH
T ss_pred HHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 7777652 1 345566666555432 467899999999999999999999999998
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhhccc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccc
Q 000098 1738 VLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2256)
Q Consensus 1738 ilp~Ll~~L~d-~~~~VR~~Al~al~~iv~~~~~~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~ 1815 (2256)
+++.++..... +.+ ..+..+..++..++... +...++.+ +.
T Consensus 727 ~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~~~~~~~~~~------------------l~--------------- 769 (963)
T 2x19_B 727 LCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEPAHFPPIEAL------------------FL--------------- 769 (963)
T ss_dssp HHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCTTTCHHHHHH------------------HH---------------
T ss_pred HHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCcchHHHHHHH------------------HH---------------
Confidence 88887765443 111 12333444444333210 00011110 00
Q ss_pred cCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHh-cC--CcHHHHHHHHHHHHHHHhcChhHHH--HH-HHHHHHH
Q 000098 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SD--VSLSVRQAALHVWKTIVANTPKTLK--EI-MPVLMNT 1889 (2256)
Q Consensus 1816 ~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~-~D--~~~~Vr~aA~~~l~~l~~~~~~~l~--~~-l~~Ll~~ 1889 (2256)
.++..++... .+ ....++......+..+..+++..+- +. ++.+++.
T Consensus 770 ----------------------------~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~ 821 (963)
T 2x19_B 770 ----------------------------LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQC 821 (963)
T ss_dssp ----------------------------HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHH
Confidence 0111111111 11 2467888888888888888776542 44 7778888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1890 LISSLASSSSERRQVAGRALGELVRKLG 1917 (2256)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~aL~~lv~~~~ 1917 (2256)
++..+...+..+...+...+..++...+
T Consensus 822 ~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 822 AVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 8888898899999999999999887654
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.83 E-value=1.6e-18 Score=227.59 Aligned_cols=395 Identities=13% Similarity=0.149 Sum_probs=297.4
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh----
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~---- 1207 (2256)
..++..+.+++..+|+.|.+.|..+... .|+.+..++..+.+ .+.+..+|..++..|+++...
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~------------~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN------------PGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc------------CCCChHHHHHHHHHHHHhccccchH
Confidence 4567767789999999999999886543 44444444443332 123578999999999998632
Q ss_pred -----------hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHhhccCCChhhhhh
Q 000098 1208 -----------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1208 -----------~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
++.+....+.+.++ .++.+.++.+ ..+..+...+....++ ..|+.++|.+...+.+. . .+..
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~-~---~~~~ 145 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNP-N---STEH 145 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCT-T---CCHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccC-C---CCHH
Confidence 22222344556554 5788888888 8888888887776655 47999999998887651 1 0236
Q ss_pred hhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHcCCC--CHHHHHHHHHhhHHhHHhhcCc-----hHHHHHHHHHHH
Q 000098 1276 VREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~--~~~~i~~il~~Ll~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~-----~~~~l~~Ll~~L 1346 (2256)
+|+.++.+++.+++.... ..+++..+++.+...+.++ +..||..+++|+..++....+. ...++...+..+
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 899999999999986532 2456788899999999988 7999999999988765443211 223333344445
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcccch-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------
Q 000098 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL-------------- 1410 (2256)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~-~~-~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l-------------- 1410 (2256)
..+.+..+|..++.+|..++...+..... -. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 56677999999999999999876532111 12 5777777777765 7889999999999998763
Q ss_pred -------ccCchHhHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHH
Q 000098 1411 -------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2256)
Q Consensus 1411 -------~~~~~pyv~~llp~ll~~l~D-------~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~ 1476 (2256)
...+++|+..++|.++..+.+ .+..+|.+|..+++.++..++...+..++|.+.+.+.+.+|+.|.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~ 384 (462)
T 1ibr_B 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (462)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHH
T ss_pred CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHH
Confidence 123467888999999888753 345799999999999999888655688899999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHHhhh
Q 000098 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 1546 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~Ll~~l 1546 (2256)
+++.++|.+++++. +.+..+++.++|.+...++|+++.||.+|+++|+++++.+++ ++++.+++.|++.+
T Consensus 385 aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 99999999998765 567778899999999999999999999999999999998764 35677777777655
No 16
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.80 E-value=1.2e-15 Score=219.52 Aligned_cols=588 Identities=11% Similarity=0.093 Sum_probs=349.4
Q ss_pred HHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HH
Q 000098 1050 LCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IW 1121 (2256)
Q Consensus 1050 ~~~~~~~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w 1121 (2256)
+..-.+..++.++|..+++|+++.|++|++.|++.... |....+...++ ..+.+.++|.+|.. .|
T Consensus 9 ~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~W 81 (1049)
T 3m1i_C 9 FSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRKW 81 (1049)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHTG
T ss_pred CCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhhC
Confidence 33344557788999999999999999999999876422 22233344433 33557777777544 56
Q ss_pred hhcCCCCCCCh-HhHHHhhcCC---------CHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 000098 1122 DRYGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190 (2256)
Q Consensus 1122 ~~~~~~~~~~~-~~ll~~l~~~---------~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~ 1190 (2256)
..++.+.+..+ ..+++++.+. +..+|.+.+++++.++.. ||+.|+++++.|.+... .+
T Consensus 82 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-----------~~ 150 (1049)
T 3m1i_C 82 KLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-----------SS 150 (1049)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-----------TC
T ss_pred ccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-----------cC
Confidence 55554444455 6677766532 478999999999999864 89999999999988631 11
Q ss_pred cchhHHHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCCh
Q 000098 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDE 1270 (2256)
Q Consensus 1191 ~~~R~~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~ 1270 (2256)
...+.++..+|..+.+-+.+-.. .+....-|...- ..+. +....+++.+..++... .
T Consensus 151 ~~~~~~~l~~L~~l~eev~~~~~------------~~~~~~r~~~lk----~~l~----~~~~~i~~~~~~~l~~~-~-- 207 (1049)
T 3m1i_C 151 VNVCENNMIVLKLLSEEVFDFSA------------EQMTQAKALHLK----NSMS----KEFEQIFKLCFQVLEQG-S-- 207 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCT------------TTSCHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHC-C--
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc------------hhhhhHHHHHHH----HHHH----HHHHHHHHHHHHHHHhc-C--
Confidence 23466777777777653221000 000111111100 1111 12445556666666542 1
Q ss_pred hhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh-cCc-------hHHHHHHH
Q 000098 1271 EKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVSRL 1342 (2256)
Q Consensus 1271 ~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~-~~~-------~~~~l~~L 1342 (2256)
+..++..++.+++....+.+.....-..+++.+++.+. +++.++..+.+|+..++... .+. +..+++.+
T Consensus 208 --~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~ 284 (1049)
T 3m1i_C 208 --SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNT 284 (1049)
T ss_dssp --CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHH
Confidence 12567777777776555443110000113343332211 26778888889988887652 121 11222223
Q ss_pred HHHHh-----------------cCCCHHHHHHHHHHHHHHHhhhC-----cccchh--hcHHHHHHHHHhCCCCHHHHHH
Q 000098 1343 LDQLM-----------------KSDKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRREG 1398 (2256)
Q Consensus 1343 l~~L~-----------------~~~~~~vR~~Aa~~L~~lv~~~g-----~~~~~~--~~il~~L~~~l~~~~~~~~Re~ 1398 (2256)
+..+. .+.+...++..+..+..++.... ...... ..+++.+.+....+ +..++..
T Consensus 285 l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~~ 363 (1049)
T 3m1i_C 285 LQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFKT 363 (1049)
T ss_dssp HHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHHH
T ss_pred HHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHHH
Confidence 33221 12234444455555544443221 000111 13556666555555 7788888
Q ss_pred HHHHHHHHHHHh------ccCchHhHHHHHHHHHHHcCCC-------------------c---HHHHHHHHHHHHHHHhh
Q 000098 1399 ALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMSQ 1450 (2256)
Q Consensus 1399 al~al~~L~~~l------~~~~~pyv~~llp~ll~~l~D~-------------------~---~~VR~aa~~al~~l~~~ 1450 (2256)
++..|..+++.+ ...+.+++.++++.++..+.-+ + ...|.++.+++..++..
T Consensus 364 ~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~ 443 (1049)
T 3m1i_C 364 TLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL 443 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc
Confidence 888888888843 2456788999999888765211 1 14577788888888765
Q ss_pred hhHhhHHhHHHHHHHhcc--CCChhHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHhhc-----CCCHHHHHHHHHH
Q 000098 1451 LSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQTA 1522 (2256)
Q Consensus 1451 l~~~~v~~ilp~Ll~~L~--~~~w~~R~~a~~~Lg~la~~~p~~l~-~~L~~Ivp~L~~~L~-----D~~~~VR~aA~~a 1522 (2256)
.+...+..+++.+-+.+. +.+|+.|.+++.++|.++++..+... .+++.+++.+..+.. |+++.||..++++
T Consensus 444 ~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~ 523 (1049)
T 3m1i_C 444 NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYV 523 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Confidence 554444666666666664 47899999999999999987765533 447888888877543 5678888889999
Q ss_pred HHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1523 LQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2256)
Q Consensus 1523 L~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~ 1602 (2256)
++++++.+.... ..+..+++.+..++.+.++.++..||.++.+
T Consensus 524 lgry~~~~~~~~-------------------------------------~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~ 566 (1049)
T 3m1i_C 524 VGQYPRFLKAHW-------------------------------------NFLRTVILKLFEFMHETHEGVQDMACDTFIK 566 (1049)
T ss_dssp HHHCHHHHHHCH-------------------------------------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH-------------------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999987653210 1122344455555666667888888888888
Q ss_pred HhhhcCC------CCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc-CchHHHHHHHHHHhhcCCCHHHH
Q 000098 1603 MCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVER 1675 (2256)
Q Consensus 1603 L~~~l~~------~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~-~~~~~lip~Ll~~L~~~~~~~~R 1675 (2256)
+++.... +..+.||++.++..+..++.+...+-+....++++.++...++ +....++..++..+..
T Consensus 567 l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~------- 639 (1049)
T 3m1i_C 567 IVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM------- 639 (1049)
T ss_dssp HHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHH-------
T ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------
Confidence 8874321 1223499999999999998887777778889999999987763 2222333333222111
Q ss_pred HHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCC-CHH-HH--HHHHHHHHHhHhhhChhHHHHHHHHHHHHH
Q 000098 1676 SGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VR--DGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743 (2256)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~-~~~-vR--~~al~~l~~La~~~g~~f~~yl~~ilp~Ll 1743 (2256)
.+..+ +.....+..+. ++. ++ ...+.++..++..+|..|.|+++.+++.++
T Consensus 640 -----~~~~~------------~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 640 -----AWDTI------------VEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1049)
T ss_dssp -----HHHHH------------HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred -----HHHHH------------HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 00011 10011111100 111 12 133567788899999999999887776554
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.78 E-value=9.2e-17 Score=210.68 Aligned_cols=329 Identities=17% Similarity=0.181 Sum_probs=262.2
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh-hHHhHHHHHHHhccCC--ChhHHHHHHHHHHHHHhhC-hhhHh
Q 000098 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCA-PQQLS 1494 (2256)
Q Consensus 1419 ~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~-~v~~ilp~Ll~~L~~~--~w~~R~~a~~~Lg~la~~~-p~~l~ 1494 (2256)
..+...++..+.++++.+ ..+..++..++....+. .++.++|.+++.+.++ ++..|.+++.+|+.+++.. ++.+.
T Consensus 89 ~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 89 REVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence 345566777788888888 88889999998875443 5788999999999988 9999999999999999876 67777
Q ss_pred hhhhhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChh
Q 000098 1495 QCLPKIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 1572 (2256)
Q Consensus 1495 ~~L~~Ivp~L~~~L~D~--~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~ 1572 (2256)
.+++.+++.+..++.|. ++.||.+|++++..+...+.+. .. ...
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~-------------~~~-------------------- 213 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FD-------------KES-------------------- 213 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH-HT-------------SHH--------------------
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh-hh-------------hhH--------------------
Confidence 88899999999999998 7999999999999876433210 00 000
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh-hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh-
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM- 1650 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~-~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~- 1650 (2256)
....+++.+.+.+.+.++++|..++.++..++.. .++.+.+|++ .+++.+...+.|.++.+|..++..++.+++..
T Consensus 214 ~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~ 291 (462)
T 1ibr_B 214 ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (462)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 0112455556666778889999999999999984 3456778888 99999999999999999999999999998753
Q ss_pred -----------------C--cC----chHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHH
Q 000098 1651 -----------------G--EE----NFPDLVSWLLDALKS------DNSNVERSGAAQGLSEVLAALGTVYFEHILPDI 1701 (2256)
Q Consensus 1651 -----------------g--~~----~~~~lip~Ll~~L~~------~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~l 1701 (2256)
. .. +.+.++|.+++.+.+ +.++..|..++.+++.++..+|...+..++|.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l 371 (462)
T 1ibr_B 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371 (462)
T ss_dssp HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 11 236788888888854 234568999999999999999977888899999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhHhhhC-hhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc-----chhc
Q 000098 1702 IRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-----SLPL 1775 (2256)
Q Consensus 1702 l~~l~~~~~~vR~~al~~l~~La~~~g-~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~-----~~~~ 1775 (2256)
...+++++|.+|.+++.+++.++.... ..+.++++.++|.++..+.|+++.||..|+.++..+...++.. .++.
T Consensus 372 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ 451 (462)
T 1ibr_B 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 999999999999999999999998665 4466788999999999999999999999999999999887653 2344
Q ss_pred hHHHHHhhc
Q 000098 1776 LLPAVEDGI 1784 (2256)
Q Consensus 1776 llp~L~~~l 1784 (2256)
++|.+...+
T Consensus 452 ll~~Ll~~L 460 (462)
T 1ibr_B 452 LLQCLIEGL 460 (462)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHHHh
Confidence 555554433
No 18
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.76 E-value=5.4e-14 Score=201.79 Aligned_cols=719 Identities=10% Similarity=0.035 Sum_probs=414.3
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC----chHhHH-HHHHHHH
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL----FEPYVI-QMLPLLL 1426 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~----~~pyv~-~llp~ll 1426 (2256)
...|+.|-..|..+-+.. +....+.+.+....+..+|..|...+......-... -..++. .+++.+.
T Consensus 21 ~~~r~~A~~~L~~~~~~p--------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 21 SQNQAITHEWLTDAEASP--------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIV 92 (971)
T ss_dssp TTC----CHHHHHTTTST--------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH--------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHH
Confidence 345655555554432211 222333344444446777777777666665542111 122332 3555555
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCC------ChhHHHHHHHHHHHHHhhC-----------
Q 000098 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCA----------- 1489 (2256)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~------~w~~R~~a~~~Lg~la~~~----------- 1489 (2256)
...++ ...||.....++..++....+ .++.+++.++..+.++ +...+..++.+|..+.+..
T Consensus 93 ~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~ 170 (971)
T 2x1g_F 93 RFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVV 170 (971)
T ss_dssp HHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHH
Confidence 54433 488999999999999988655 7888899998887653 4557778888888777531
Q ss_pred -hhhHhhhhhhHHHHHHHhhcCC-C-------HHHHHHHHHHHHHHHh--hcCchhHHhHHHHHHhhh------------
Q 000098 1490 -PQQLSQCLPKIVPKLTEVLTDT-H-------PKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGL------------ 1546 (2256)
Q Consensus 1490 -p~~l~~~L~~Ivp~L~~~L~D~-~-------~~VR~aA~~aL~~l~~--~i~~~~i~~lv~~Ll~~l------------ 1546 (2256)
.+.+...++.+++.+..++.+. + ..++..+..++..+.. .++......+++.++. +
T Consensus 171 ~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~ 249 (971)
T 2x1g_F 171 LRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAG 249 (971)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhcccccccc
Confidence 1334556777888777777532 1 2789999999998887 4543333566776665 4
Q ss_pred ----CCCChhHH-HHHHHHHhcccc-c-CCChhhHhhHHHHHHH-------hhcCCC---HHHHHHHHHHHHHHhhh---
Q 000098 1547 ----TDPNDHTK-YSLDILLQTTFV-N-TVDAPSLALLVPIVHR-------GLRERS---AETKKKAAQIVGNMCSL--- 1606 (2256)
Q Consensus 1547 ----~d~~~~vr-~al~~L~~~~~~-~-~~~~~~l~~i~p~L~~-------~L~d~~---~~vR~~a~~~l~~L~~~--- 1606 (2256)
.++++..+ .+++.+...-.. . ....+.+..++|.+.. ...+.+ .+.....+.++..+++.
T Consensus 250 ~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~ 329 (971)
T 2x1g_F 250 DGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHST 329 (971)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHH
T ss_pred ccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 11223444 355554431110 0 1112233334444332 223333 25566667777766642
Q ss_pred -cC----C-CCcchhhhhhhhHHHHHhhcC-----CCHHHHHHHHHHHHHHHHhh-C-----c---------CchHHHHH
Q 000098 1607 -VT----E-PKDMIPYIGLLLPEVKKVLVD-----PIPEVRSVAARAIGSLIRGM-G-----E---------ENFPDLVS 1660 (2256)
Q Consensus 1607 -l~----~-~~~l~~~l~~Ll~~L~~~L~d-----~~~~VR~~a~~aL~~L~~~~-g-----~---------~~~~~lip 1660 (2256)
+. . .....+++..+++.+..+... .+.++...++..+..+++.. . . .++..+++
T Consensus 330 ~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 409 (971)
T 2x1g_F 330 LLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTR 409 (971)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 10 0 000224566677777776543 46788889999888887632 1 0 13455666
Q ss_pred HHHHHhhcCC-------CH-------HHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC-----CCHHHHHHHHHHHH
Q 000098 1661 WLLDALKSDN-------SN-------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFK 1721 (2256)
Q Consensus 1661 ~Ll~~L~~~~-------~~-------~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~-----~~~~vR~~al~~l~ 1721 (2256)
.++..+.-++ +. .-|..++..+..++..+|...+..+++.+.+.+.+ .+|..|++++.+++
T Consensus 410 ~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 410 ILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 6666653211 11 24556666777777777766677777776666544 68999999999999
Q ss_pred HhHhhhChhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHH
Q 000098 1722 YLPRSLGVQFQNYLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2256)
Q Consensus 1722 ~La~~~g~~f~~yl~~ilp~Ll~~L~--d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~ll 1799 (2256)
.++........++++.+++ ++..+. |.++.||..++.++..+...+....
T Consensus 490 ~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--------------------------- 541 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--------------------------- 541 (971)
T ss_dssp HTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------------------------------
T ss_pred HHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH---------------------------
Confidence 9988776655577888888 444444 4578888888887776654332110
Q ss_pred HHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHH
Q 000098 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2256)
Q Consensus 1800 g~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l 1879 (2256)
+....++..++..+ | ..|+..|..++..++..++..+
T Consensus 542 ----------------------------------------~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l 578 (971)
T 2x1g_F 542 ----------------------------------------AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQL 578 (971)
T ss_dssp -----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhc
Confidence 01112233333333 2 3467888888888888888889
Q ss_pred HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhhCcc----chhchHHHHh----hhcCCC--ChhhHHhH---H
Q 000098 1880 KEIMPVLMNTLISSLAS--SSSERRQVAGRALGELVRKLGER----VLPSIIPILS----RGLKDP--SASRRQGV---C 1944 (2256)
Q Consensus 1880 ~~~l~~Ll~~L~~~L~~--~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~----~~l~d~--~~~vR~~a---~ 1944 (2256)
.++++.+++.+...+.. -+...+.....+++.++...+.. ++..+++.+. +.+... +++.+... .
T Consensus 579 ~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l 658 (971)
T 2x1g_F 579 KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRL 658 (971)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999888877 35788999999999999876522 3444444433 333332 23233333 3
Q ss_pred HHHHHHHHhhCh------------hhhHhhHhhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhchh---hHHhHHHH
Q 000098 1945 IGLSEVMASAGK------------SQLLSFMDELIPTIRTALCD--SILEVRESAGLAFSTLFKSAGMQ---AIDEIVPT 2007 (2256)
Q Consensus 1945 ~aL~eii~~~~~------------~~l~~~l~~li~~l~~~L~D--~~~~VR~~A~~al~~l~~~~g~~---~~~~ilp~ 2007 (2256)
..++.++...+. +.+.++.+.+++.+...+.+ .+.++.+.+..+++.+...+|.. +++.+++.
T Consensus 659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 738 (971)
T 2x1g_F 659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF 738 (971)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence 334444444332 23567788899988887754 36789999999999988877653 34444444
Q ss_pred HHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCC------ccccHhhHHHHHHH
Q 000098 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG------LNFHLGTILPALLS 2081 (2256)
Q Consensus 2008 Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~------l~~~l~~Ilp~Ll~ 2081 (2256)
++..+..... ..++. .++.+...+|.. +.+.+..+...++.
T Consensus 739 l~~~~~~~~~-~~~l~--------------------------------l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 785 (971)
T 2x1g_F 739 IVASFQTRCC-APTLE--------------------------------ISKTAIVMFFKDEGCKPLMQQLLREFIQHSFK 785 (971)
T ss_dssp HHHHCC--CC-HHHHH--------------------------------HHHHHHTTCCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCc-hHHHH--------------------------------HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 4444443221 11222 222233333331 22233333444444
Q ss_pred hhCC-------CCHHHHHHHHHHHHHHHhhcch-----hc-HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhc--hhh
Q 000098 2082 AMGD-------DDMDVQSLAKEAAETVTLVIDE-----EG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS--KLY 2146 (2256)
Q Consensus 2082 ~l~~-------~~~~vr~~a~~al~~l~~~~~~-----~~-~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~--~~~ 2146 (2256)
.+.. .++++++.....+..++..... +. +..+++..+..+..+++....+++..+..++... ...
T Consensus 786 ~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~ 865 (971)
T 2x1g_F 786 LFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAH 865 (971)
T ss_dssp HHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 4433 2578888888888888876532 44 7888888888888777777778888888876653 111
Q ss_pred ----hhhhHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhccCC
Q 000098 2147 ----LVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2147 ----~~~y~~~il~~L~~~l~-D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
+..+.+.++..++..+. .....+.+.+...|..+....|
T Consensus 866 ~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~ 909 (971)
T 2x1g_F 866 VTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYA 909 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCc
Confidence 22344555555554332 3344555566666666655444
No 19
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.75 E-value=3.5e-14 Score=190.32 Aligned_cols=700 Identities=14% Similarity=0.111 Sum_probs=433.7
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhh-CcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC
Q 000098 1336 PTLVSRLLDQLMK-SDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~-~~~~~vR~~Aa~~L~~lv~~~-g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~ 1413 (2256)
..-+.+||+.+++ +.+.+.|+.|+.-|--+++.- |.+.+-+.+-+..+.+.+..+++....-.++.++..+|++-...
T Consensus 5 ~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r 84 (810)
T 3now_A 5 STKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84 (810)
T ss_dssp HHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHH
Confidence 3456677777774 446678888988888777642 33333234566777777777578888888888888887754211
Q ss_pred chHhHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH------------------hhHHhHHHHHHHhccCC--Ch
Q 000098 1414 FEPYVIQ-MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------------------QGVKLVLPSLLKGLEDK--AW 1472 (2256)
Q Consensus 1414 ~~pyv~~-llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~------------------~~v~~ilp~Ll~~L~~~--~w 1472 (2256)
....+.. -.|.++..+.-+++.+-.++...+..+...+.+ ..++.++..+++.+.+. +-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (810)
T 3now_A 85 TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISG 164 (810)
T ss_dssp HHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccCh
Confidence 1111221 145666666667777777777777777765542 12456777777887764 45
Q ss_pred hHHHHHHHHHHHHHhhC----hhhHhhhhhhHHHHHHHhhc---CC--------CHHHHHHHHHHHHHHHhhcCchhHHh
Q 000098 1473 RTKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLT---DT--------HPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~----p~~l~~~L~~Ivp~L~~~L~---D~--------~~~VR~aA~~aL~~l~~~i~~~~i~~ 1537 (2256)
..|-.++++|..-.... +..+.. ..=+..++.+.. +. .+++|..+.-++..+-+......-
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~-- 240 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEA-- 240 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHH--
T ss_pred hhHHHHHHHHHHhCCccccccccchhh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchh--
Confidence 67888888776554221 111110 111222222221 11 345666666666666655432100
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh--
Q 000098 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-- 1615 (2256)
Q Consensus 1538 lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-- 1615 (2256)
| ......+-..+...+...+.+.+..++.++.++... . .+...
T Consensus 241 ----------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g--~-~~~~~~~ 285 (810)
T 3now_A 241 ----------------K----------------ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG--P-LDVGNQV 285 (810)
T ss_dssp ----------------H----------------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSS--S-HHHHHHH
T ss_pred ----------------H----------------HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcC--C-HHHHHHH
Confidence 0 001111222333334445556666667777777652 2 11111
Q ss_pred h-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC--cCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc--
Q 000098 1616 Y-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-- 1690 (2256)
Q Consensus 1616 ~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g--~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g-- 1690 (2256)
+ .+..++.+..++.+++..++..|..+++.++..-. .......+|+|...+++ .+..+|..++.+|..+....+
T Consensus 286 ~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s-~~~~vr~~Al~~L~kl~s~~~~d 364 (810)
T 3now_A 286 VAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHS-KNDGIRVRALVGLCKLGSYGGQD 364 (810)
T ss_dssp HHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTTTTT
T ss_pred HhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcC-CCHHHHHHHHHHHHHhccccccC
Confidence 1 34678999999999999999999999999765311 11233345888888875 456688888888888864332
Q ss_pred -------HhHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHH
Q 000098 1691 -------TVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALG 1759 (2256)
Q Consensus 1691 -------~~~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~ 1759 (2256)
.....++++.+.+.+.++ ++.+|..++.++.+++......- ... ..++|.++..+..++..+...++.
T Consensus 365 ~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~-~lv~d~g~Ip~LV~LL~s~d~~i~~~al~ 443 (810)
T 3now_A 365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE-KLIEDKASIHALMDLARGGNQSCLYGVVT 443 (810)
T ss_dssp TSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH-HHHHCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred ccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH-HHHHccchHHHHHHHhCCCChHHHHHHHH
Confidence 123577889999998887 88999999999999975433221 111 468899999998888888888888
Q ss_pred HHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHH---HHHHHH
Q 000098 1760 AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG---RAIIEV 1836 (2256)
Q Consensus 1760 al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~---~~l~~~ 1836 (2256)
++..+...+... ..+|.+.+.- .. ++... . .+++-...+... +.+++.
T Consensus 444 ~L~NLt~~~d~q---~~~~~l~~la----------------~~----s~~~v----~--~~~~ld~~~~v~~r~~~Vvea 494 (810)
T 3now_A 444 TFVNLCNAYEKQ---EMLPEMIELA----------------KF----AKQHI----P--EEHELDDVDFINKRITVLANE 494 (810)
T ss_dssp HHHHHTTCSCCC---CCCCSCGGGT----------------TT----TCCSC----C--CSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCchhh---hhhHHHHHHH----------------HH----hhccC----c--cccccccHHHHHHHHHHHHHC
Confidence 888876533211 1111111000 00 00000 0 000000111111 222221
Q ss_pred hcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1837 LGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2256)
Q Consensus 1837 Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~-~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~ 1915 (2256)
..++.|...+...+..+|+.|+.++..++.+ +..-..++. ..++.++..+.+.+...|..|+++|+.++..
T Consensus 495 -------GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 495 -------GITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT 566 (810)
T ss_dssp -------THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred -------cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Confidence 2566666777778899999999999999853 332222222 2456666667888899999999999999875
Q ss_pred hCccc------hhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhH-hhHHHHHHHHhcCCCHHHHHHHHH
Q 000098 1916 LGERV------LPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGL 1987 (2256)
Q Consensus 1916 ~~~~~------l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l-~~li~~l~~~L~D~~~~VR~~A~~ 1987 (2256)
..+.. ....+|.|.+.+..+ +...+..++.+|..+.... .+...... ...++.+...+.+.++.||++|+.
T Consensus 567 ~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 43321 134788888888744 3344567888888776432 11111111 246777878888888889988888
Q ss_pred HHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCC
Q 000098 1988 AFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067 (2256)
Q Consensus 1988 al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~ 2067 (2256)
+++.+.. ++..... +. -|
T Consensus 646 ~L~NLa~--~~~~~~~--------------------------------------------------------~v--~~-- 663 (810)
T 3now_A 646 CLCNLVM--SEDVIKM--------------------------------------------------------FE--GN-- 663 (810)
T ss_dssp HHHHHTT--SHHHHHH--------------------------------------------------------HH--SS--
T ss_pred HHHHHhC--ChHHHHH--------------------------------------------------------HH--hc--
Confidence 8777653 1110000 00 01
Q ss_pred ccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch--hc-H--HHHHHHHHhhcCCCChhhHHHHHHHHHHHHHh
Q 000098 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EG-V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2256)
Q Consensus 2068 l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~--~~-~--~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~ 2142 (2256)
...++.|+..+..++..+|..+..+++.+....+. .. + ...++.|...+.+++..+|..|+.+++.+...
T Consensus 664 -----~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 664 -----NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp -----SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred -----cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 13567788888888899999999999999874221 11 2 24778888999999999999999999999874
Q ss_pred chhhhhhhH--HHHHHHHHHHcCCC---ChHHHHHHHHHHHHhhc
Q 000098 2143 SKLYLVDEA--PNMISTLIVLLSDS---DSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2143 ~~~~~~~y~--~~il~~L~~~l~D~---d~~Vr~~A~~aL~~l~~ 2182 (2256)
.. +...++ ...+++|..++.++ +..+++.|..||..+.+
T Consensus 739 s~-e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 739 GE-EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp CH-HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 33 223332 46788898888654 78999999999999875
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.75 E-value=9.4e-15 Score=195.84 Aligned_cols=673 Identities=11% Similarity=0.076 Sum_probs=425.3
Q ss_pred HHHHHhhcCCCCCCChHhHHHhhcC-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHhhcCCCCCCCCCCcchh
Q 000098 1117 AEDIWDRYGYDFGTDYSGLFKALSH-SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSL-YIRDIGLGGDNVDAGWLGR 1194 (2256)
Q Consensus 1117 ~~~~w~~~~~~~~~~~~~ll~~l~~-~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~-~~~~~~~~~~~~~~~~~~R 1194 (2256)
|+.+|++.+.. .+...+.+ .+..+.-++-++|+.+++.+++-...++..+-.- +...+. .++-+.-
T Consensus 42 a~~i~~~~~~~------~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~ 109 (810)
T 3now_A 42 AELLYKDHCIA------KVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLD------QKHENCV 109 (810)
T ss_dssp HHHHHHTTHHH------HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH------CCSTTHH
T ss_pred hHHHHhCchHH------HHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHc------CCCHHHH
Confidence 55688877632 34445555 7899999999999999988765444443333111 111111 1122333
Q ss_pred HHHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhh
Q 000098 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYD 1274 (2256)
Q Consensus 1195 ~~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~ 1274 (2256)
.++...+..+...+...+. +--.-+++.+- .. .+..+..++..+...+.+. . ...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-----------~~-~~~~~~~~~~~l~~~~~~~-~---~~~ 164 (810)
T 3now_A 110 STAQFCLQTILNALSGLKN---------KPDSKPDKELC-----------TR-NNREIDTLLTCLVYSITDR-T---ISG 164 (810)
T ss_dssp HHHHHHHHHHHHHHHTCCS---------STTCCCCHHHH-----------HH-THHHHHHHHHHHHHHHTCT-T---SCH
T ss_pred HHHHHHHHHHHHHHhcccc---------ccccCCcHHHH-----------hh-hhhHHHHHHHHHHHHhhcc-c---cCh
Confidence 4444444444333221100 00001122211 10 1112334444455555442 1 122
Q ss_pred hhhhHHHHHHHHHHhhhccCCcch---HHHHHHHHHHcC---CC--------CHHHHHHHHHhhHHhHHhhc-----Cch
Q 000098 1275 LVREGVVIFTGALAKHLAKDDPKV---HAVVDKLLDVLN---TP--------SEAVQRAVSSCLSPLMQSMQ-----DEA 1335 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~l~~~~~~i---~~il~~Ll~~L~---~~--------~~~Vq~~~~~~L~~lv~~~~-----~~~ 1335 (2256)
..|+.+++++..-..+.+...+.. ..-+.++++.-. .. .+++|..++-|+..+....+ +.+
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 244 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARF 244 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 567888877765553322111100 012233333221 11 24678888899988887664 456
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~---~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
.+.+..++...+...+......|+.++..+..+... ..+.....++.+...+.++ +...++.|+++++.++....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~-~~~~q~~A~~al~~aa~~~~- 322 (810)
T 3now_A 245 TDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD-DELQQRVACECLIAASSKKD- 322 (810)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHTTSHH-
T ss_pred HHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCcH-
Confidence 677777777777777778888899999999886532 2222336788888888877 78888999999988765422
Q ss_pred CchHhHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh---------HhhHHhHHHHHHHhccCC--ChhHHHHHHH
Q 000098 1413 LFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---------AQGVKLVLPSLLKGLEDK--AWRTKQSSVQ 1480 (2256)
Q Consensus 1413 ~~~pyv~-~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~---------~~~v~~ilp~Ll~~L~~~--~w~~R~~a~~ 1480 (2256)
...++. .-+|.+...+..+++.+|..|..++..+..... ...+..+++.+.+.+.++ +..+|..|++
T Consensus 323 -~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Ave 401 (810)
T 3now_A 323 -KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAAD 401 (810)
T ss_dssp -HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHH
T ss_pred -HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 222222 223888888888888999999999988874321 123578899999999877 8899999999
Q ss_pred HHHHHHhhChhhHhhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchh-HHhHHHHHHhhhC----CCCh---
Q 000098 1481 LLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-IASLVPTLLMGLT----DPND--- 1551 (2256)
Q Consensus 1481 ~Lg~la~~~p~~l~~~-L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~-i~~lv~~Ll~~l~----d~~~--- 1551 (2256)
+|.+++........-. -..++|.|++++...++.++..|.++|.+++.....+. +..+ ..+-+... .+.+
T Consensus 402 aLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l-~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 402 GLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM-IELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC-GGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH-HHHHHHhhccCcccccccc
Confidence 9999986543222111 24789999999999999999999999999997432110 0000 00001100 0011
Q ss_pred --hHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhhhhhHHHHHhh
Q 000098 1552 --HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVL 1628 (2256)
Q Consensus 1552 --~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~~Ll~~L~~~L 1628 (2256)
.++.=.+.+. -+..+|.+.+.+.+.++.+|..|+.++++++. +...... .-...+|.|..++
T Consensus 481 ~~~v~~r~~~Vv------------eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~---d~~~r~~Vv~~Gaip~Lv~LL 545 (810)
T 3now_A 481 VDFINKRITVLA------------NEGITTALCALAKTESHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMA 545 (810)
T ss_dssp HHHHHHHHHHHH------------HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHH
Confidence 1110011221 12478999999999999999999999999985 2111111 1235788999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcCc------hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH-HHHH
Q 000098 1629 VDPIPEVRSVAARAIGSLIRGMGEEN------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHIL 1698 (2256)
Q Consensus 1629 ~d~~~~VR~~a~~aL~~L~~~~g~~~------~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l-~~ll 1698 (2256)
.++.+.+|..|+.+|+.++....++. ....+|.|.+.|.++.+...+..++.+|..++..-... .. ...+
T Consensus 546 ~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l 625 (810)
T 3now_A 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Confidence 99999999999999999987543221 13478999998886555555667888888876542111 11 3578
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc---cch
Q 000098 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSL 1773 (2256)
Q Consensus 1699 ~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~---~~~ 1773 (2256)
|.+...+.+.++.+|..++.+++.++..-. ....+. ...++.++.++..++..+|..|+.++..+...... ..+
T Consensus 626 ~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii 704 (810)
T 3now_A 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKIL 704 (810)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 899999999999999999999999986322 223344 25789999999999999999999999888653211 112
Q ss_pred --hchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH
Q 000098 1774 --PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2256)
Q Consensus 1774 --~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2256)
...+|.|.+.+.+.+.+++..++..+..+... + .+ ..+.+.+. ..+..|..
T Consensus 705 ~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-------------s------~e-~~~~l~e~-------G~i~~L~~ 757 (810)
T 3now_A 705 AIASWLDILHTLIANPSPAVQHRGIVIILNMINA-------------G------EE-IAKKLFET-------DIMELLSG 757 (810)
T ss_dssp TSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-------------C------HH-HHHHHHTS-------THHHHHTT
T ss_pred HHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-------------C------HH-HHHHHHHC-------CCHHHHHH
Confidence 34788999999999999999999999988521 0 11 11222211 24555555
Q ss_pred HhcCC---cHHHHHHHHHHHHHHHh
Q 000098 1852 VRSDV---SLSVRQAALHVWKTIVA 1873 (2256)
Q Consensus 1852 ~~~D~---~~~Vr~aA~~~l~~l~~ 1873 (2256)
.+.+. +..+++.|..++..+..
T Consensus 758 LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 758 LGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp SCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHhCcccCcHHHHHHHHHHHHHHHh
Confidence 54433 57788888888877654
No 21
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.75 E-value=8e-13 Score=189.75 Aligned_cols=655 Identities=13% Similarity=0.098 Sum_probs=396.4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccC-----CChhHHHHHHHHHHHHHhhC------
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCA------ 1489 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~R~~a~~~Lg~la~~~------ 1489 (2256)
++..+... .+....||.....++..++...-+..++.+++.+++.+.+ .+...+..++.+|..+.+..
T Consensus 105 ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~ 183 (963)
T 2x19_B 105 LFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLP 183 (963)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCc
Confidence 44444432 2235889999999999998876556688899999988865 24556778888888887531
Q ss_pred -------hhhHhhhhhhHHHHHHHhhcCCCH--HHHHHHHHHHHHHHhhcCchhH--HhHHHHHHhhhCCCChhHHHHHH
Q 000098 1490 -------PQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTKYSLD 1558 (2256)
Q Consensus 1490 -------p~~l~~~L~~Ivp~L~~~L~D~~~--~VR~aA~~aL~~l~~~i~~~~i--~~lv~~Ll~~l~d~~~~vr~al~ 1558 (2256)
.+.+...++.+++.+..++.+... .++..+.+++..+.. ++.+.. ..+++.+++.+.++.-. ..+++
T Consensus 184 ~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~-~~a~~ 261 (963)
T 2x19_B 184 QYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELF-DSSVE 261 (963)
T ss_dssp --------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHH-HHHHH
Confidence 122345677888888888876432 488888888877665 433322 67888888888655321 13444
Q ss_pred HHHhccc--ccCCChhhHhhHHHHHHH-------hhcCCCHHHHHHHHHHHHHHhhhcC----CCCcchhhhhhhhHHHH
Q 000098 1559 ILLQTTF--VNTVDAPSLALLVPIVHR-------GLRERSAETKKKAAQIVGNMCSLVT----EPKDMIPYIGLLLPEVK 1625 (2256)
Q Consensus 1559 ~L~~~~~--~~~~~~~~l~~i~p~L~~-------~L~d~~~~vR~~a~~~l~~L~~~l~----~~~~l~~~l~~Ll~~L~ 1625 (2256)
.+...-. ......+.+..+++.+.. .+.+.+.+.....+.++..+++... ......+++..+++.+.
T Consensus 262 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll 341 (963)
T 2x19_B 262 AIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIM 341 (963)
T ss_dssp HHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHH
Confidence 4433110 000012233333333322 2233344555555666666554210 00001245556667666
Q ss_pred HhhcC-----CCHHHHHHHHHHHHHHHHhhC--------------cCchHHHHHHHHHHhhcCCC-------H-------
Q 000098 1626 KVLVD-----PIPEVRSVAARAIGSLIRGMG--------------EENFPDLVSWLLDALKSDNS-------N------- 1672 (2256)
Q Consensus 1626 ~~L~d-----~~~~VR~~a~~aL~~L~~~~g--------------~~~~~~lip~Ll~~L~~~~~-------~------- 1672 (2256)
.+..+ .+..+...+...+..+++... ..++..+++.++..+....+ .
T Consensus 342 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~ 421 (963)
T 2x19_B 342 FCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421 (963)
T ss_dssp HHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHH
Confidence 66654 355667677777777766321 01344555666555532111 0
Q ss_pred HHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCC
Q 000098 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNC----SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2256)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l----~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d 1748 (2256)
.-|..+...+..++...|...+..+++.+...+ .+.+|..|++++.+++.++........++++.+++.+. .+.+
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~ 500 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCC
Confidence 124555566667777777666666776666666 56789999999999999988776655567777777444 4454
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHH
Q 000098 1749 ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2256)
Q Consensus 1749 ~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~ 1828 (2256)
+++.||..++.+++.+...+....
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~-------------------------------------------------------- 524 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHP-------------------------------------------------------- 524 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCH--------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCH--------------------------------------------------------
Confidence 577788888777776544322110
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q 000098 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS--SSSERRQVAG 1906 (2256)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~--~~~~~R~~A~ 1906 (2256)
+....++..++..+.+ ..|+..|..++..++..++..+.++++.+++.+...+.. -+...|....
T Consensus 525 -----------~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 525 -----------VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp -----------HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 0111223333333333 356777777888888777777888888888888777764 3578899999
Q ss_pred HHHHHHHHhhC-cc---chhchHHHHhhhcC----C-CChhhHH---hHHHHHHHHHHhhCh------------------
Q 000098 1907 RALGELVRKLG-ER---VLPSIIPILSRGLK----D-PSASRRQ---GVCIGLSEVMASAGK------------------ 1956 (2256)
Q Consensus 1907 ~aL~~lv~~~~-~~---~l~~llp~L~~~l~----d-~~~~vR~---~a~~aL~eii~~~~~------------------ 1956 (2256)
.+++.++...+ +. ++..+++.+.+.+. . .+++.+. ....+++.+...++.
T Consensus 592 eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 671 (963)
T 2x19_B 592 QALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVP 671 (963)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC--------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCC
Confidence 99999998766 22 45555555544432 2 2444433 345566666666542
Q ss_pred ---hhhHhhHhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHh----hccCCchHHHHHHHHH
Q 000098 1957 ---SQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA----LEDDQTSDTALDGLKQ 2027 (2256)
Q Consensus 1957 ---~~l~~~l~~li~~l~~~L~--D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~----L~~~~~~~~al~~L~~ 2027 (2256)
....++...+++.+...+. ..+..+.+.++.+++.+....|... ..++|.++.. +.....
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~---------- 740 (963)
T 2x19_B 672 QGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-APMVPQLCEMLGRMYSTIPQ---------- 740 (963)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-GGGHHHHHHHHHHHHHHSCC----------
T ss_pred CCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-cccHHHHHHHHHHHHHcCCc----------
Confidence 1234466777777776653 2356889999999999888777443 2234443332 221110
Q ss_pred HHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHh--CCCccccHhhHHHHHHHh----hC-C--CCHHHHHHHHHHH
Q 000098 2028 ILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA--GPGLNFHLGTILPALLSA----MG-D--DDMDVQSLAKEAA 2098 (2256)
Q Consensus 2028 il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~--g~~l~~~l~~Ilp~Ll~~----l~-~--~~~~vr~~a~~al 2098 (2256)
+ .....++.+...+ ++.+.+++..++..++.. +. + ..++++......+
T Consensus 741 ----------~-------------~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll 797 (963)
T 2x19_B 741 ----------A-------------SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLL 797 (963)
T ss_dssp ----------H-------------HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHH
T ss_pred ----------c-------------HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHH
Confidence 0 1223334444422 233445555554444443 22 2 3689999999999
Q ss_pred HHHHhhcch-----hc-HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhch------hhhhhhHHHHHHHHHHHcCCCC
Q 000098 2099 ETVTLVIDE-----EG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK------LYLVDEAPNMISTLIVLLSDSD 2166 (2256)
Q Consensus 2099 ~~l~~~~~~-----~~-~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~------~~~~~y~~~il~~L~~~l~D~d 2166 (2256)
..++..+.. +. +..+++.++..+++.+..+..+++..+..++...+ .-+..|...++..++..+.+..
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 877 (963)
T 2x19_B 798 AQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQA 877 (963)
T ss_dssp HHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999986542 33 88899999999999999999999999999886532 1245677888888888776543
Q ss_pred -hHHHHHHHHHHHHhhc
Q 000098 2167 -STTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2167 -~~Vr~~A~~aL~~l~~ 2182 (2256)
....+.....|..+..
T Consensus 878 ~~~~~~~~~~il~~l~~ 894 (963)
T 2x19_B 878 SRSLMDCFADILFALNK 894 (963)
T ss_dssp CGGGHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 3334455555544443
No 22
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.75 E-value=1e-13 Score=194.31 Aligned_cols=590 Identities=11% Similarity=0.086 Sum_probs=347.1
Q ss_pred HHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHH--------H
Q 000098 1048 NELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------D 1119 (2256)
Q Consensus 1048 ~~~~~~~~~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~--------~ 1119 (2256)
.++.+.++.+.+.+++..+++|++..|++|++.|++.... |....+...++ ..+.++.+|-.|. .
T Consensus 7 l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 7 LDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp GCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHh
Confidence 3445556678899999999999999999999999876422 22223333333 2344567666543 4
Q ss_pred HHhhcCCCCCCCh-HhHHHhhcC----C-----CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCC
Q 000098 1120 IWDRYGYDFGTDY-SGLFKALSH----S-----NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVD 1188 (2256)
Q Consensus 1120 ~w~~~~~~~~~~~-~~ll~~l~~----~-----~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 1188 (2256)
.|..++.+-+..+ ..+++.+.+ + ...+|.+.+++++.++. .||+.|+.++..+.+...
T Consensus 80 ~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----------- 148 (1023)
T 4hat_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----------- 148 (1023)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT-----------
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc-----------
Confidence 6766655444445 666665532 1 46788999999999985 589999999999988631
Q ss_pred CCcchhHHHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCC
Q 000098 1189 AGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS 1268 (2256)
Q Consensus 1189 ~~~~~R~~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~ 1268 (2256)
.+...+..+...|+.+.+-..+ + . -.+-...-|....+.... .++.+++.+..+|... .
T Consensus 149 ~~~~~~~~~L~iL~~L~EEV~~--------~--~--~~~l~~~r~~~lk~~l~~--------~~~~I~~ll~~iL~~~-~ 207 (1023)
T 4hat_C 149 SSVNVCENNMIVLKLLSEEVFD--------F--S--AEQMTQAKALHLKNSMSK--------EFEQIFKLCFQVLEQG-A 207 (1023)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT--------S--C--TTTSCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC-S
T ss_pred CCHHHHHHHHHHHHHHHHHHHH--------h--h--hccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-C
Confidence 1123355555555555442111 0 0 000011111111111111 1345566666666542 1
Q ss_pred ChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHH-HHcCCCCHHHHHHHHHhhHHhHHhh--cC--chHHHH----
Q 000098 1269 DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQSM--QD--EAPTLV---- 1339 (2256)
Q Consensus 1269 ~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll-~~L~~~~~~Vq~~~~~~L~~lv~~~--~~--~~~~~l---- 1339 (2256)
. ..+...++.+++.....++...-.-..+++.++ ..|. ++..+.++++||..++... ++ ...+.+
T Consensus 208 ~----~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf 281 (1023)
T 4hat_C 208 S----SSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1023)
T ss_dssp S----CHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHH
Confidence 1 135566777777766654421000013456666 5553 5678899999999988632 22 123222
Q ss_pred HHHHHHH---------------h--cCCCHHHHHHHHHHHHHHHhhhCcccc--hh-hcHHH----HHHHHHhCCCCHHH
Q 000098 1340 SRLLDQL---------------M--KSDKYGERRGAAFGLAGVVKGFGISSL--KK-YGIAA----TLREGLADRNSAKR 1395 (2256)
Q Consensus 1340 ~~Ll~~L---------------~--~~~~~~vR~~Aa~~L~~lv~~~g~~~~--~~-~~il~----~L~~~l~~~~~~~~ 1395 (2256)
...+..+ . .+++....++-+..+..+......-.. .. .+++. .+......+ ++..
T Consensus 282 ~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d~ei 360 (1023)
T 4hat_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-EREL 360 (1023)
T ss_dssp HHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-CHHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-cHHH
Confidence 2222222 1 111233333444444444433221110 11 12332 333333333 6766
Q ss_pred HHHHHHHHHHHHHHhc------cCchHhHHHHHHHHHHHcCCCc---------------------H-HHHHHHHHHHHHH
Q 000098 1396 REGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV---------------------V-AVREAAECAARAM 1447 (2256)
Q Consensus 1396 Re~al~al~~L~~~l~------~~~~pyv~~llp~ll~~l~D~~---------------------~-~VR~aa~~al~~l 1447 (2256)
-+.++..|..+.+.+- ..+.|++.++++.++..+.-+. . ..-....+++..+
T Consensus 361 ~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l 440 (1023)
T 4hat_C 361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL 440 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHH
Confidence 6677777777877543 2478889999999987654221 1 1111122566555
Q ss_pred HhhhhHhhHHhHHHHHHHhccC--CChhHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHhhc-----CCCHHHHHHH
Q 000098 1448 MSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSAG 1519 (2256)
Q Consensus 1448 ~~~l~~~~v~~ilp~Ll~~L~~--~~w~~R~~a~~~Lg~la~~~p~-~l~~~L~~Ivp~L~~~L~-----D~~~~VR~aA 1519 (2256)
..-.+.+.++.+++.+.+.+.+ .+|+.|.+++.++|+++++..+ ....+++.++|.++.++. |+.+.||..+
T Consensus 441 ~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~ 520 (1023)
T 4hat_C 441 THLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDI 520 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHH
Confidence 5444544456677777766653 6899999999999999988754 467899999999999886 5667788899
Q ss_pred HHHHHHHHhhcCc-h-hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1520 QTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1520 ~~aL~~l~~~i~~-~-~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
+++++++++++.. + +++. ++..+..++.+.++++...||
T Consensus 521 ~~~lGry~~wl~~~~~~L~~---------------------------------------vl~~L~~~l~~~~~~v~~~A~ 561 (1023)
T 4hat_C 521 MYVVGQYPRFLKAHWNFLRT---------------------------------------VILKLFEFMHETHEGVQDMAC 561 (1023)
T ss_dssp HHHHHTCHHHHHHCHHHHHH---------------------------------------HHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHH---------------------------------------HHHHHHHHhhcCCHHHHHHHH
Confidence 9999999887642 1 2233 334445555555667777777
Q ss_pred HHHHHHhhhcC------CCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-hHHHHHHHHHHhhcCC
Q 000098 1598 QIVGNMCSLVT------EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDN 1670 (2256)
Q Consensus 1598 ~~l~~L~~~l~------~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~-~~~lip~Ll~~L~~~~ 1670 (2256)
.++.++|+-+. .+....||++.++..+.....+-.+.-+..+..+++.++.+.+.+. .+.++..|+..+..
T Consensus 562 ~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~-- 639 (1023)
T 4hat_C 562 DTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM-- 639 (1023)
T ss_dssp HHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH--
T ss_pred HHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH--
Confidence 77777776432 1233467999999988888888888888999999999999887441 33344433332221
Q ss_pred CHHHHHHHHHHHHHHHHH--hcHhHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc
Q 000098 1671 SNVERSGAAQGLSEVLAA--LGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2256)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~--~g~~~l~--~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L 1746 (2256)
.+..++.. -+...+. .-...+ -..+.++..++...|..|.|++..+++.+++..
T Consensus 640 ----------~~~~l~~~~~~~~~~~~d~~~~~~l------------~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y 697 (1023)
T 4hat_C 640 ----------AWDTIVEQSTANPTLLLDSETVKII------------ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY 697 (1023)
T ss_dssp ----------HHHHHHHHHHHCTTGGGCHHHHHHH------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhcCchhhcCHHHHHHH------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 01111110 0110000 001111 123457778899999999999999999887653
No 23
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.73 E-value=2.1e-13 Score=191.27 Aligned_cols=627 Identities=11% Similarity=0.102 Sum_probs=368.1
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccC-CcHHHHHHHHHHHhh----cCCC--
Q 000098 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHD-PEKSVAEAAEDIWDR----YGYD-- 1127 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d-~~~~~~~~~~~~w~~----~~~~-- 1127 (2256)
+++.+.+..+++| |++.|++|.+-|++.... |....+...++ .... .+.++|-.|....+. ++.+
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL-~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEIF-SEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT-TCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 4566667666777 688999999999876422 22223333332 1222 267777777666653 2222
Q ss_pred --CCCCh-HhHHHhhc-----CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHH
Q 000098 1128 --FGTDY-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2256)
Q Consensus 1128 --~~~~~-~~ll~~l~-----~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2256)
-...+ ..+++.+. .....+|.+.+++++.++. .||+.|+..+..+.+..... + .+.+..
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~---~~~~~~ 147 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------S---QSEFSN 147 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------C---CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------C---hhHHHH
Confidence 22223 55666554 2467899999999999985 58999998888888774321 1 122223
Q ss_pred HHHHHhh---hhhccCChhHhHHHHHHhhcCCCCHH--HHHHHHHHHHHHHHhhc-cccccchHHHHHHHhhccCCChhh
Q 000098 1199 LALHSAA---DVLRTKDLPVIMTFLISRALADTNAD--VRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEK 1272 (2256)
Q Consensus 1199 ~aL~~l~---~~~~~~~~~~l~~~lv~~~l~D~~~~--VR~~a~~a~~~~i~~~g-~~~~~~Ll~~l~~~L~~~~~~~~~ 1272 (2256)
..++-+. +-+.+... ..+.+ -|..-+ ...+.... +...+..+.++..+... .
T Consensus 148 ~~LriL~~i~EEv~~~~~-------------~~~~~~~~r~~~l---kd~m~~~~~~~i~~~~~~iL~~~~~~--~---- 205 (980)
T 3ibv_A 148 FYLKVLLSIGDEIADSLV-------------LKTDVQIQKDNLV---KDAIRANDMSDIVSFVYEMMLAYSNA--K---- 205 (980)
T ss_dssp HHHHHHHHHHHHHCCCCS-------------CCCHHHHHHHHHH---HHHHHHHTHHHHHHHHHHHHHHHHHT--T----
T ss_pred HHHHHHHHhHHHHHhccc-------------ccCHHHHhhhHHH---HHHHHhccHHHHHHHHHHHHHHHhcc--C----
Confidence 3333332 21111000 01111 111110 11111110 00122233333333321 1
Q ss_pred hhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCc--hHHHHHHH-----HHH
Q 000098 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE--APTLVSRL-----LDQ 1345 (2256)
Q Consensus 1273 ~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~--~~~~l~~L-----l~~ 1345 (2256)
+..++..++.+++....+++...-.-..+++.++..|.+ +.++.++++||..++....+. ...++..+ +..
T Consensus 206 ~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~ 283 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK 283 (980)
T ss_dssp CHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence 124566677777665554432110014677777877765 688999999999988765321 11222211 111
Q ss_pred Hhc-CCCHHHHHHHHHHHHHHHhh-----hCcc---------c-chhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000098 1346 LMK-SDKYGERRGAAFGLAGVVKG-----FGIS---------S-LKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2256)
Q Consensus 1346 L~~-~~~~~vR~~Aa~~L~~lv~~-----~g~~---------~-~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~ 1409 (2256)
+.. +++...+++-+..+..+... ..+. . -.-..+++.+.....++ +..+-..++..+....+.
T Consensus 284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~-~deVs~~t~~Fw~~~l~~ 362 (980)
T 3ibv_A 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD-YDETSTAVFPFLSDLLVS 362 (980)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS-SHHHHHTTHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHH
Confidence 221 34556554444333222111 0110 0 00115777777777776 556666666556555543
Q ss_pred h---------ccCchHhHHHHHHHHHHHcCC-------C----c-----HHHHHHHHHHHHHHHhhhhHhhH-H----hH
Q 000098 1410 L---------GRLFEPYVIQMLPLLLVAFSD-------Q----V-----VAVREAAECAARAMMSQLSAQGV-K----LV 1459 (2256)
Q Consensus 1410 l---------~~~~~pyv~~llp~ll~~l~D-------~----~-----~~VR~aa~~al~~l~~~l~~~~v-~----~i 1459 (2256)
+ ...+.|++.++++.++..+.- . + ...|.... .+..+...+.+..+ . .+
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 363 LRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHH
Confidence 2 123467888888888876531 1 1 13555555 44444445554443 3 33
Q ss_pred HHHHHHhcc---CCChhHHHHHHHHHHHHHhhChhhH------hhhhhhHHHHHHHhhc-----CCCHHHHHHHHHHHHH
Q 000098 1460 LPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQ 1525 (2256)
Q Consensus 1460 lp~Ll~~L~---~~~w~~R~~a~~~Lg~la~~~p~~l------~~~L~~Ivp~L~~~L~-----D~~~~VR~aA~~aL~~ 1525 (2256)
.+.+-+.+. +.+|+.+.+++.+|+.++++++... ...+|.+++.+..+++ ++||.||..+++++++
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 334444442 4679999999999999999986532 2467888888888866 8999999999999999
Q ss_pred HHhhcCc-h-hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHH--hhcCCCHHHHHHHHHHHH
Q 000098 1526 VGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSAETKKKAAQIVG 1601 (2256)
Q Consensus 1526 l~~~i~~-~-~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~--~L~d~~~~vR~~a~~~l~ 1601 (2256)
+++++.. + ++.. +++.+.. ++.+++.++|..|+.++.
T Consensus 522 ys~~~~~~~~~l~~---------------------------------------~L~~ll~~~gl~~~~~~V~~~a~~af~ 562 (980)
T 3ibv_A 522 YASFFDYESAAIPA---------------------------------------LIEYFVGPRGIHNTNERVRPRAWYLFY 562 (980)
T ss_dssp TGGGGGTCCTTHHH---------------------------------------HHHHHTSTTTTTCCCTTTHHHHHHHHH
T ss_pred HHHHHhcCchhHHH---------------------------------------HHHHHhccccccCCChhHHHHHHHHHH
Confidence 9988752 1 2222 3334444 555666678888899999
Q ss_pred HHhhhcCCCCcchhhhhhhhHHHHHhhcC---C------------------CHHHHHHHHHHHHHHHHhhCc--C----c
Q 000098 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGE--E----N 1654 (2256)
Q Consensus 1602 ~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d---~------------------~~~VR~~a~~aL~~L~~~~g~--~----~ 1654 (2256)
++++.. ...+.||++.++..+..++.- + ..+-+.....++|.++...+. + +
T Consensus 563 ~f~~~~--~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~ 640 (980)
T 3ibv_A 563 RFVKSI--KKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALY 640 (980)
T ss_dssp HHHHHT--TTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHh--hHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999853 346778988888888777652 1 123466789999999987652 1 4
Q ss_pred hHHHHHHHHHHhh----cCCCH-HHHH---HHHHHHHHHHHHhcH---------hHHHHHHHHHHHhcc--CCCHHHHHH
Q 000098 1655 FPDLVSWLLDALK----SDNSN-VERS---GAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--HQRASVRDG 1715 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~----~~~~~-~~R~---~aa~~L~~i~~~~g~---------~~l~~ll~~ll~~l~--~~~~~vR~~ 1715 (2256)
+..+++.+++.+. ..... ..+. ....+++.+.+++.. ..+.+.++.++..+. ..+..+|+.
T Consensus 641 l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea 720 (980)
T 3ibv_A 641 CDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGA 720 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 5556666555443 22111 1111 334556777777632 245677777766665 468899999
Q ss_pred HHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Q 000098 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2256)
Q Consensus 1716 al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~ 1771 (2256)
++.+|.++..++|.++.|+++.++..++....-.. . ...+..+.+++..|+.+
T Consensus 721 ~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e--~-~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 721 VRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE--L-VDVLSFISQLIHIYKDN 773 (980)
T ss_dssp HHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT--H-HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH--H-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996544221 1 23456778888888877
No 24
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.73 E-value=7.3e-13 Score=189.08 Aligned_cols=638 Identities=11% Similarity=0.093 Sum_probs=374.9
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh---------hHhhh
Q 000098 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ---------QLSQC 1496 (2256)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~---------~l~~~ 1496 (2256)
+..+.++...+|.....++..++..--+..++.++|.+++.+.+.+...+.+++.++..+++.... .+...
T Consensus 91 l~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~ 170 (960)
T 1wa5_C 91 VPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLV 170 (960)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 333334558999999999999988755567889999999999988888999999999999875431 11111
Q ss_pred hhhHHHHH-------HHhhcCCCH---HHH------HHHHHHHHHHHhhcCch----hHHhHHHHHHhhhCCCChhHHHH
Q 000098 1497 LPKIVPKL-------TEVLTDTHP---KVQ------SAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTKYS 1556 (2256)
Q Consensus 1497 L~~Ivp~L-------~~~L~D~~~---~VR------~aA~~aL~~l~~~i~~~----~i~~lv~~Ll~~l~d~~~~vr~a 1556 (2256)
+..+.|.+ ..++.+... .+| ..+++++..+...--.. .+...++.+...+..+.+
T Consensus 171 l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p----- 245 (960)
T 1wa5_C 171 LDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNP----- 245 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCC-----
Confidence 22223322 223554322 233 12333332222100001 112222222222221100
Q ss_pred HHHHHhcccccCCChhhHhhHHHHHHHhhcCC--CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc-----
Q 000098 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----- 1629 (2256)
Q Consensus 1557 l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~--~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~----- 1629 (2256)
.... +. --.+. .+.+|+.++.++..+.+. .++.+.+|++.+++.+...+.
T Consensus 246 --------~~~~-d~------------d~~~~~~~~~vk~~~~~~l~~l~~~--~~~~f~~~~~~~~~~~~~~l~~~~~~ 302 (960)
T 1wa5_C 246 --------LLED-PD------------ETEHASVLIKVKSSIQELVQLYTTR--YEDVFGPMINEFIQITWNLLTSISNQ 302 (960)
T ss_dssp --------CCC-------------------CCCHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred --------cccC-Cc------------ccccccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0000 00 00000 146788888888888763 334567888888887777764
Q ss_pred CCCHHHHHHHHHHHHHHHHhhC-------cCchHHHH-HHHHHHhh----c------------------CCCHHHHHHHH
Q 000098 1630 DPIPEVRSVAARAIGSLIRGMG-------EENFPDLV-SWLLDALK----S------------------DNSNVERSGAA 1679 (2256)
Q Consensus 1630 d~~~~VR~~a~~aL~~L~~~~g-------~~~~~~li-p~Ll~~L~----~------------------~~~~~~R~~aa 1679 (2256)
.....++..++..+..+++.-. +.+++.++ +.++..+. + +..+..|..+.
T Consensus 303 ~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~ 382 (960)
T 1wa5_C 303 PKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACT 382 (960)
T ss_dssp TTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHH
Confidence 3456788888888877764211 12344444 33333332 0 11123577778
Q ss_pred HHHHHHHHHhcHhHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhHhhh-----C--h-----hHHHHHH-HHHH
Q 000098 1680 QGLSEVLAALGTVYFEHILPDIIRNCS------HQRASVRDGYLTLFKYLPRSL-----G--V-----QFQNYLQ-QVLP 1740 (2256)
Q Consensus 1680 ~~L~~i~~~~g~~~l~~ll~~ll~~l~------~~~~~vR~~al~~l~~La~~~-----g--~-----~f~~yl~-~ilp 1740 (2256)
..+..++..+|...+..+++.+.+.+. +.+|..|++++.+++.++... | . ++.+++. .++|
T Consensus 383 ~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 383 DFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 889999998887677777777766665 678999999999999997532 1 1 4555543 2334
Q ss_pred HHHHhcCCC---CHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000098 1741 AILDGLADE---NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2256)
Q Consensus 1741 ~Ll~~L~d~---~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~ 1817 (2256)
. +.|+ ++.||..++.+++.+...+.+
T Consensus 463 ~----l~~~~~~~p~vr~~a~~~lg~~~~~~~~----------------------------------------------- 491 (960)
T 1wa5_C 463 D----LTSNNIPHIILRVDAIKYIYTFRNQLTK----------------------------------------------- 491 (960)
T ss_dssp H----HHCSSCSCHHHHHHHHHHHHHTGGGSCH-----------------------------------------------
T ss_pred H----hcCCCCCCceehHHHHHHHHHHHhhCCH-----------------------------------------------
Confidence 3 3444 677777777666654322111
Q ss_pred CCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc-----------ChhHHHHHHHHH
Q 000098 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN-----------TPKTLKEIMPVL 1886 (2256)
Q Consensus 1818 ~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~-----------~~~~l~~~l~~L 1886 (2256)
+....++..+...+.|.+..||..|..++..++.. .+..+.++++.+
T Consensus 492 ----------------------~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~l 549 (960)
T 1wa5_C 492 ----------------------AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEIL 549 (960)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHH
Confidence 11223444455555666777888888888887763 235578888999
Q ss_pred HHHHHHHhcCCC---HH--HHHHHHHHHHHHHHhhCccc---hhchHHHHhhhc----CCC-ChhhHHhHHHHHHHHHHh
Q 000098 1887 MNTLISSLASSS---SE--RRQVAGRALGELVRKLGERV---LPSIIPILSRGL----KDP-SASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1887 l~~L~~~L~~~~---~~--~R~~A~~aL~~lv~~~~~~~---l~~llp~L~~~l----~d~-~~~vR~~a~~aL~eii~~ 1953 (2256)
++.+...+.... .. ....+..|++.++...++.+ .+.+++.+...+ +++ ++..+..++.+++.++..
T Consensus 550 l~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 550 LKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 888888777641 11 34578899999999887763 344444444332 333 556677788999988888
Q ss_pred hChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--hhhHHhHHHHHH--HhhccCCchHHHHHHHHHHH
Q 000098 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLL--HALEDDQTSDTALDGLKQIL 2029 (2256)
Q Consensus 1954 ~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g--~~~~~~ilp~Ll--~~L~~~~~~~~al~~L~~il 2029 (2256)
.+++...++.+.++|.+...+.....+..+.+...++.+.+... ..++.+++|.+. ..++....-......+...+
T Consensus 630 ~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~ 709 (960)
T 1wa5_C 630 TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFI 709 (960)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHH
Confidence 77777778888999999988876666777777777777766431 133445666666 55544322223334444443
Q ss_pred hhhcccch--hhhh---hhhhcCc-hhhhHHHHHHHHHHHhCCC-ccccHhhHHHHHHHhhCCC-CHHHHHHHHHHHHHH
Q 000098 2030 SVRTTAVL--PHIL---PKLVHLP-LSAFNAHALGALAEVAGPG-LNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETV 2101 (2256)
Q Consensus 2030 ~~~~~~~l--p~li---~~L~~~p-~~~~~~~aL~~La~~~g~~-l~~~l~~Ilp~Ll~~l~~~-~~~vr~~a~~al~~l 2101 (2256)
....+.+. ..++ .++.... .+......++.++..+|.. +.||++.+++.++..+... .+..+......+..+
T Consensus 710 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~ 789 (960)
T 1wa5_C 710 KTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLI 789 (960)
T ss_dssp HHHGGGCSCSHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHH
Confidence 32222222 2121 1222221 1234567788888888888 9999999999999998655 455554443333333
Q ss_pred Hhhcchhc-------------HHHHHHHHHhhcCC-CChhhHHHHHHHHHHHHHhc---hhhhhhhHHHHHHHHHHHcCC
Q 000098 2102 TLVIDEEG-------------VESLVSELLKGVGD-NQASIRRSSAYLIGYFYKNS---KLYLVDEAPNMISTLIVLLSD 2164 (2256)
Q Consensus 2102 ~~~~~~~~-------------~~~ll~~Ll~~l~~-~~~~vR~~A~~~l~~l~~~~---~~~~~~y~~~il~~L~~~l~D 2164 (2256)
+...+.+. ...+....+..+.. .+...|..++.++..+.... +..+.+..+.++..++.++..
T Consensus 790 ~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 790 SNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp HHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred HHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhC
Confidence 33222211 11122233333332 23567888888888887755 445556677777777776643
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.71 E-value=6.3e-14 Score=188.47 Aligned_cols=483 Identities=16% Similarity=0.188 Sum_probs=333.2
Q ss_pred HHHHhccCCChhHHHHHH-HHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHH
Q 000098 1462 SLLKGLEDKAWRTKQSSV-QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLV 1539 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~-~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv 1539 (2256)
.+.+.+.+.+...|..++ .++..+..+. + .+..++.+++++.+++..+|+.+..++..+++. +++. .-++
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~--d----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~ 88 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK--D----VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV 88 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC--C----CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC--C----hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence 344455555555554433 4444333332 2 234556677789999999999999999998764 2433 5567
Q ss_pred HHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh
Q 000098 1540 PTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2256)
Q Consensus 1540 ~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~ 1618 (2256)
+.+.+.+.++++.+|. |+.+++... .......++|.+.+.+.|+++.+|+.|+.++..++.. .+..+. . +
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~-----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~--~p~~~~-~-~ 159 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR-----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI--NAQMVE-D-Q 159 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC-----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS--SCCCHH-H-H
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh--Chhhcc-c-c
Confidence 8888999999998884 788877632 2335567788899999999999999999999999983 333322 1 3
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH
Q 000098 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2256)
Q Consensus 1619 ~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2256)
.+++.+..++.|+++.|+..|+.+++.++..-++. ..+..++.++..+.+. ++..+......++.+.. .+.+..
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~-~~~~~~ 237 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNP-KDDREA 237 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCC-CSHHHH
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCC-CChHHH
Confidence 58899999999999999999999999988754422 2245677777777653 44355544444433221 112245
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhh---ChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Q 000098 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL---GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~---g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~ 1771 (2256)
..+++.+...+++.++.|+..++.++..+.... .+.+......+.+.+...+ +.++++|..+++++..++.....
T Consensus 238 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~- 315 (591)
T 2vgl_B 238 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE- 315 (591)
T ss_dssp HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-
Confidence 678888888999999999999999999987543 2334445667777777655 47899999999999998876432
Q ss_pred chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH
Q 000098 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2256)
Q Consensus 1772 ~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2256)
.+...+..+. ...++.+.+|..+++++..+. +++ ....++..|..
T Consensus 316 ~~~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~---------------~~~-------------------nv~~iv~~L~~ 360 (591)
T 2vgl_B 316 ILKQEIKVFF-VKYNDPIYVKLEKLDIMIRLA---------------SQA-------------------NIAQVLAELKE 360 (591)
T ss_dssp TTTTCTTTTS-CCTTSCHHHHHHHHHHHHHTC---------------CSS-------------------THHHHHHHHHH
T ss_pred HHHHHHHhhe-eccCChHHHHHHHHHHHHHHC---------------Chh-------------------hHHHHHHHHHH
Confidence 2222122221 222445999999998887752 110 01234445555
Q ss_pred HhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhh
Q 000098 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931 (2256)
Q Consensus 1852 ~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~ 1931 (2256)
...+.+..+|..++..++.++...+.....+++.+++.+ .+....++..+..++..+++..... ...+++.|.+.
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll----~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~ 435 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI----QTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCEN 435 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHH
Confidence 667788899999999999999888877777777666554 6778888888899999999875443 35667777777
Q ss_pred cCC-CChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHH
Q 000098 1932 LKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLH 2010 (2256)
Q Consensus 1932 l~d-~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~ 2010 (2256)
+.+ .++.+|..++|.+|+....... .+.++..+...+.+.++.||..+..++..+....... ..+.+..+++
T Consensus 436 l~~~~~~~~~~~~~wilGey~~~~~~------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~ 508 (591)
T 2vgl_B 436 LDSLDEPDARAAMIWIVGEYAERIDN------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLS 508 (591)
T ss_dssp TTTCCSHHHHHHHHHHHHTTCTTCTT------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHcccccccC------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHH
Confidence 764 4688899999998877543321 2345555556667888999999999999888654322 2235555666
Q ss_pred hh
Q 000098 2011 AL 2012 (2256)
Q Consensus 2011 ~L 2012 (2256)
..
T Consensus 509 ~~ 510 (591)
T 2vgl_B 509 LA 510 (591)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=1.7e-14 Score=194.14 Aligned_cols=502 Identities=16% Similarity=0.164 Sum_probs=344.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcch-HH
Q 000098 1222 SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV-HA 1300 (2256)
Q Consensus 1222 ~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i-~~ 1300 (2256)
.+.+.+++...|..++.-....+ ..|.+ +..+++.+.+++.+ + +-.+|..+...+..+++. +|.. .-
T Consensus 19 ~~~L~~~~~~~k~~~~~kli~~~-~~G~d-~~~~~~~vi~l~~s--~----~~~~Krl~yl~l~~~~~~----~~e~~~l 86 (591)
T 2vgl_B 19 KAELNNEKKEKRKEAVKKVIAAM-TVGKD-VSSLFPDVVNCMQT--D----NLELKKLVYLYLMNYAKS----QPDMAIM 86 (591)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHH-HTTCC-CGGGHHHHHHTTSS--S----CHHHHHHHHHHHHHHHHH----SHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHH-HCCCC-hHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHccc----CchHHHH
Confidence 45677788777776654444333 34544 34455555555543 1 125677777777766653 1212 23
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcH
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~i 1379 (2256)
++..+...|.++++.+|..+..+++.+. .++. +.+++.+.. +..+.++.+|+.|+.++..+.+.. ++.+....+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~-~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~ 161 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRK-CLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGF 161 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHH-HSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHhhC-hhhcccccH
Confidence 4566777899999999987777766553 2333 444554554 446778999999999999999843 455443357
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC-chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~-~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
++.+.+.+.|+ ++.++.+|+.+++.++...++. +-+.....++.++..+.+.++..+....+++..+... ++.....
T Consensus 162 ~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~ 239 (591)
T 2vgl_B 162 LDSLRDLIADS-NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQS 239 (591)
T ss_dssp HHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHH
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHH
Confidence 88898888765 8999999999998887754432 2233445566666666777888877666555443311 1234577
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhh---ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYC---APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI 1535 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~---~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i 1535 (2256)
+++.+...+.+.++.++..|+.++..+... .++.+....+.+.+.++.++ ++++.||..|+.++..++...++ .+
T Consensus 240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~ 317 (591)
T 2vgl_B 240 ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-IL 317 (591)
T ss_dssp HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HH
Confidence 899999999999999999999999988753 24445445567777777655 57899999999999999876432 22
Q ss_pred HhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
...+..+....+|| ..+| .+++.+.... .......+++.+...+.+.++++|..++..++.++.. +.
T Consensus 318 ~~~~~~~~~~~~d~-~~Ir~~al~~L~~l~-----~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~------~~ 385 (591)
T 2vgl_B 318 KQEIKVFFVKYNDP-IYVKLEKLDIMIRLA-----SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK------VE 385 (591)
T ss_dssp TTCTTTTSCCTTSC-HHHHHHHHHHHHHTC-----CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT------CH
T ss_pred HHHHHhheeccCCh-HHHHHHHHHHHHHHC-----ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------Ch
Confidence 22222233333555 6665 5888776522 1224567888888999999999999999999999863 23
Q ss_pred hhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH
Q 000098 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2256)
+..+..++.+..++.+....++..+..++..+....+.. ...+++.|.+.+.+...+..|..+++.+|++...... .
T Consensus 386 ~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~ 462 (591)
T 2vgl_B 386 QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--A 462 (591)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--H
T ss_pred hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--H
Confidence 445667888899999999999999999999988765533 4567788888888777777888888888887654422 2
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHH
Q 000098 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-AD-ENESVRDAALGAGHV 1763 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L-~d-~~~~VR~~Al~al~~ 1763 (2256)
..++..+++.+.+.++.+|..++.++.-+....+....+ .+..+++.. .| .+.+||+.|...+..
T Consensus 463 ~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~----~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 463 DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQE----LVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHH----HHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 456666676777778999999999998887766554323 333344443 45 678999988766544
No 27
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.65 E-value=3.1e-11 Score=167.86 Aligned_cols=588 Identities=9% Similarity=0.082 Sum_probs=334.1
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHH--------
Q 000098 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2256)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~-------- 1118 (2256)
+.++.+.++-..+..++..+++|+++.|.+|++.|++.... |........++ ..+.+.++|-.|.
T Consensus 18 ~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~iL--~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 18 LLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTIL--EFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp CCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred hhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 34444555667899999999999999999999999877522 22222222222 2345666666544
Q ss_pred HHHhhcCCCCCCCh-HhHHHhhcC---------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000098 1119 DIWDRYGYDFGTDY-SGLFKALSH---------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2256)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~ll~~l~~---------~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 1187 (2256)
..|..++.+-+..+ ..+++++.+ .+..++.+.+++++.++. .||+.|+..+..+.+....
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--------- 161 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--------- 161 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---------
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---------
Confidence 35665554444445 666765531 357899999999999986 4899999888888876421
Q ss_pred CCCcchhHHHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccC
Q 000098 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2256)
Q Consensus 1188 ~~~~~~R~~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~ 1267 (2256)
+...+..+...|..+.+-+.+-... +...+++..++.. +.. .++.+++.+..+|.. .
T Consensus 162 --~~~~~~~~L~IL~~L~EEV~d~~~~--------~l~~~r~~~lk~~--------L~~----~~~~Il~ll~~iL~~-~ 218 (1073)
T 3gjx_A 162 --SESLCQNNMVILKLLSEEVFDFSSG--------QITQVKAKHLKDS--------MCN----EFSQIFQLCQFVMEN-S 218 (1073)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTSHHH--------HBCHHHHHHHHHH--------HHH----TCHHHHHHHHHHHHH-C
T ss_pred --CHHHHHHHHHHHHHHHHHHHhcccc--------cccHHHHHHHHHH--------HHH----HHHHHHHHHHHHhcc-c
Confidence 1234556666666665532110000 0000111111211 121 256667777777764 2
Q ss_pred CChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHH-HHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHH
Q 000098 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL 1346 (2256)
Q Consensus 1268 ~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~L-l~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L 1346 (2256)
.. ..+...++..++....+++.+.-.-..+++.+ ...| +++..|.++++||..++..-.+...+.+..+++.+
T Consensus 219 ~~----~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 QN----APLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp CC----HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 21 24556677777777776543210001245555 3455 45678999999999988753222333333333221
Q ss_pred h--------cCCCHHHH--------HHHHHHHHHHHhhhCcccch--------hh---cHHHHHHHHHhCCCCHHHHHHH
Q 000098 1347 M--------KSDKYGER--------RGAAFGLAGVVKGFGISSLK--------KY---GIAATLREGLADRNSAKRREGA 1399 (2256)
Q Consensus 1347 ~--------~~~~~~vR--------~~Aa~~L~~lv~~~g~~~~~--------~~---~il~~L~~~l~~~~~~~~Re~a 1399 (2256)
. ...+.... ..-..+++.+....|..... .. ..+..+..... ..+...-+.+
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~-~~d~ei~kit 371 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE-VEETEIFKIC 371 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 1 01011000 01223344333332211110 00 12222333323 3366666677
Q ss_pred HHHHHHHHHHhc-------------------------cCchHhHHHHHHHHHHHcCCCc---------------------
Q 000098 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQV--------------------- 1433 (2256)
Q Consensus 1400 l~al~~L~~~l~-------------------------~~~~pyv~~llp~ll~~l~D~~--------------------- 1433 (2256)
+..|..+.+.+- ..+.|++.++...++..+.-|+
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 777777766532 0156667777777766654211
Q ss_pred -HHHHHHHHHHHHHHHhhhhHhh-HHhHHHHHHHhcc--CCChhHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHhh
Q 000098 1434 -VAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVL 1508 (2256)
Q Consensus 1434 -~~VR~aa~~al~~l~~~l~~~~-v~~ilp~Ll~~L~--~~~w~~R~~a~~~Lg~la~~~p~-~l~~~L~~Ivp~L~~~L 1508 (2256)
-..++...+++..+. ++.+.. ...+++.+-+.+. ..+|..+.+.+.++|+|+.+..+ .-..+++.+++.|+.+.
T Consensus 452 ~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 124444455554443 333333 3555666655554 35799999999999999976654 45678999999999888
Q ss_pred cCC-----CHHHHHHHHHHHHHHHhhcCch--hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHH
Q 000098 1509 TDT-----HPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2256)
Q Consensus 1509 ~D~-----~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2256)
..+ .+.|+...++.++++.+++... .++.++..++
T Consensus 531 e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~-------------------------------------- 572 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLF-------------------------------------- 572 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH--------------------------------------
T ss_pred ccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHH--------------------------------------
Confidence 654 3557777788999988876531 2344444444
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhhcCC------CCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-
Q 000098 1582 HRGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2256)
Q Consensus 1582 ~~~L~d~~~~vR~~a~~~l~~L~~~l~~------~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~- 1654 (2256)
+++.+.++.++.+||.++..+|+-+.. +....||++.++..+.....+-.++-......|+|.++...|.+.
T Consensus 573 -~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 573 -EFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp -HHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred -HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 444455556677777777777764322 123457888888888888888788888889999999999887642
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh--cHhHHHHHHHHHHHhccCCCHHHHH--HHHHHHHHhHhhhChh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEHILPDIIRNCSHQRASVRD--GYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~--g~~~l~~ll~~ll~~l~~~~~~vR~--~al~~l~~La~~~g~~ 1730 (2256)
.+.++..|+..+.. .+..++... +.+ .+.+++ .++. ..+.+...+|...|..
T Consensus 652 ~~~~i~~Lm~~~~~------------~w~~l~~~~~~~~~-----------~~~d~~-~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 652 QEHLIEKYMLLPNQ------------VWDSIIQQATKNVD-----------ILKDPE-TVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp HHHHHHHHTHHHHH------------HHHHHHHHHHHCGG-----------GGGCHH-HHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHhhcCch-----------hccChH-HHHHHHHHHhhhHHHHhhcchh
Confidence 23334333332221 011111100 111 011111 0111 2344667888999999
Q ss_pred HHHHHHHHHHHHHH
Q 000098 1731 FQNYLQQVLPAILD 1744 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~ 1744 (2256)
|.+++..+.|-+++
T Consensus 708 f~~~~~~i~~~~l~ 721 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLN 721 (1073)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887664
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.64 E-value=3.5e-14 Score=185.47 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=260.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHH
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2256)
+|.+++.++++++.+|..|+.+|..+...-.++.++.++ . ...++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 677888888999999999999999876532222221100 0 0025666
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---c-
Q 000098 1581 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N- 1654 (2256)
Q Consensus 1581 L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~- 1654 (2256)
+.+.+.+. ++.+|..++.++.+++.. ++...... -...+|.+..++.++++.+|..|+.+|+.++...... .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777766 788999999999988862 21111111 2468999999999999999999999999998632110 1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc----HhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g----~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
-..++|.+++.+.++.+..+|..++.+++.++...+ ......++|.++..+.+.++.+|..++.+++.++....+.
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 124788888888876778899999999999986441 2244788999999999999999999999999887643221
Q ss_pred HHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 000098 1731 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2256)
Q Consensus 1731 f~~yl-~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~ 1809 (2256)
..... ..++|.++..+.++++.+|..++.++..+......
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------------------------------------- 267 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI--------------------------------------- 267 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH---------------------------------------
Confidence 11111 13455555555555555555555555444221100
Q ss_pred CccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHH-HHHHH
Q 000098 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1888 (2256)
Q Consensus 1810 ~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l-~~Ll~ 1888 (2256)
..+.+.+ ..+++.+...+.+.+..+|..|+.+++.++.+.+.....++ ..+++
T Consensus 268 -------------------~~~~~~~-------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -------------------QTQVILN-------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -------------------HHHHHHT-------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -------------------HHHHHHH-------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000000 01344444455566667777777777777665555444443 24556
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-----chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh-----
Q 000098 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1958 (2256)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-----~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~----- 1958 (2256)
.++..+.++++.+|..|+.+|+.++...... .-..++|.|.+.+.++++.+|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 6666667889999999999999998764332 124688899999988899999999999998886543211
Q ss_pred -hHhhHhhH-----HHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1959 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1959 -l~~~l~~l-----i~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
..+|...+ ++.+.....+++.+|++.|..++..+.
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12344333 566666677778888888877766654
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.64 E-value=5.9e-14 Score=183.30 Aligned_cols=380 Identities=13% Similarity=0.076 Sum_probs=270.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hccCchHhHH--HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHhhhhHh-
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEK-LGRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ- 1454 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~-l~~~~~pyv~--~llp~ll~~l~D~-~~~VR~aa~~al~~l~~~l~~~- 1454 (2256)
++.+.+.+.++ ++..|+.|+.++..++.. .......++. .++|.++..+.++ ++.+|..+.+++..++...+..
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56666677655 788999999988887652 2223344444 5899999999888 8999999999999987643221
Q ss_pred -hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhh
Q 000098 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.+ ...+|.+++.+.++++.+|..|+.+|+.++...+......+ ..++|.++.++.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 11 45899999999999999999999999999987654322222 3688999999985 7899999999999999965
Q ss_pred c-Cc---hhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccC--CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1530 I-KN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2256)
Q Consensus 1530 i-~~---~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~--~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~ 1602 (2256)
. .. ..+..++|.|...+.+++..++ .++..+........ ...-....++|.+...+.+.++.+|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 11 2347889999999998887776 35555554211100 0000113467888899999999999999999999
Q ss_pred HhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---ch-HHHHHHHHHHhhcCCCHHHHHH
Q 000098 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 1677 (2256)
Q Consensus 1603 L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~-~~lip~Ll~~L~~~~~~~~R~~ 1677 (2256)
++.. ......... ..+++.+..++.++++.+|..++.+|+.++....+. .. ..++|.+++.+.+ .+..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT-AEFRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH-SCHHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHH
Confidence 9862 211111112 258899999999999999999999999998522111 11 3688889888886 46779999
Q ss_pred HHHHHHHHHHHhcHhHH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh-------HHHHHHHH-----HH
Q 000098 1678 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-------FQNYLQQV-----LP 1740 (2256)
Q Consensus 1678 aa~~L~~i~~~~g~~~l-----~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~-------f~~yl~~i-----lp 1740 (2256)
++.+++.++.....+.. ..++|.++..+.+.++.+|..++.++..++...+.. ..+|...+ ++
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 417 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLD 417 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHH
Confidence 99999999876443322 358899999999999999999999999888643321 11333333 34
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1741 AILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1741 ~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
.+...+.+++..+++.|..++..
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444455555555544443
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.62 E-value=7.5e-13 Score=183.21 Aligned_cols=505 Identities=14% Similarity=0.080 Sum_probs=320.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccc--chhhcH
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS--LKKYGI 1379 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~--~~~~~i 1379 (2256)
++.++..|.++++++|.+++..+...-.. .-....++.|+..|. +++..+|..|+.+|..+........ .....+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~--~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH--HHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 56778888899988988777766543211 112456777776555 5678999999999999987432111 111257
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--h
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~ 1455 (2256)
++.|.+.+.+..++..|..|..++..++..... ...+ ...+|.++..+.++++.+|..|..++..++...+.. .
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 788888887655899999999988887653211 1111 247899999999999999999999999998654321 1
Q ss_pred H--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHhhcCCCHH-HHHHHHHHHHHHHhhcC
Q 000098 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPK-VQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1456 v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp~L~~~L~D~~~~-VR~aA~~aL~~l~~~i~ 1531 (2256)
+ ...+|.+++.+.+.+++++..++.+|..++...++.... .-...++.|+.++.+.+++ ++..++.+|..++..-.
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 2 367899999999999999999999999888654432111 1125678888888876655 45577888888774211
Q ss_pred chhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCC
Q 000098 1532 NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2256)
Q Consensus 1532 ~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~ 1611 (2256)
+ ...++ -..++|.+...+.+.+..++..++.++.+++......
T Consensus 352 ~--~~~i~----------------------------------~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~- 394 (780)
T 2z6g_A 352 N--KPAIV----------------------------------EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ- 394 (780)
T ss_dssp H--HHHHH----------------------------------HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred H--HHHHH----------------------------------HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-
Confidence 1 00000 0123455555566666677777777888777632111
Q ss_pred cchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHH
Q 000098 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVL 1686 (2256)
Q Consensus 1612 ~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~-~~~~R~~aa~~L~~i~ 1686 (2256)
.....+++.|..++.++++.+|..++.+|+.++..-.+. .-...++.|++.|.+.. ...+|..++.+|+.+.
T Consensus 395 ---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 395 ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp ---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 123457778888888888888888888888876521110 01246777777776532 3357888888888775
Q ss_pred HHhcHh-----H--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcCCCC-------
Q 000098 1687 AALGTV-----Y--FEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADEN------- 1750 (2256)
Q Consensus 1687 ~~~g~~-----~--l~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~d~~------- 1750 (2256)
...+.. . -...+|.++..+.+++ +.+|..++.+++.++...... .... ..++|.++..+.+.+
T Consensus 472 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a 550 (780)
T 2z6g_A 472 SRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRT 550 (780)
T ss_dssp SSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHH
Confidence 432221 1 1346788888888775 489999999999887532211 1111 245666666664422
Q ss_pred ---------------HHHHHHHHHHHHHHHHHhhc-cch--hchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCcc
Q 000098 1751 ---------------ESVRDAALGAGHVLVEHYAT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2256)
Q Consensus 1751 ---------------~~VR~~Al~al~~iv~~~~~-~~~--~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~ 1812 (2256)
+.++..++.++..+...-.. ..+ ...+|.|.+.+.+.+..+|..++..++.+...
T Consensus 551 a~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~------- 623 (780)
T 2z6g_A 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------- 623 (780)
T ss_dssp C------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-------
T ss_pred hhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-------
Confidence 45666777777765321000 001 23688899999999999999999988887410
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHH
Q 000098 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2256)
Q Consensus 1813 ~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~ 1880 (2256)
. .....+.+ . ..+..|.....+.+..||..|..++..+..+.+..++
T Consensus 624 -------------~-~~~~~i~~-~------g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~ 670 (780)
T 2z6g_A 624 -------------K-EAAEAIEA-E------GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 670 (780)
T ss_dssp -------------H-HHHHHHHH-T------TCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHH
T ss_pred -------------H-HHHHHHHH-C------CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhh
Confidence 0 01111111 1 1345566667888999999999999999887764443
No 31
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.61 E-value=1.5e-10 Score=166.49 Aligned_cols=664 Identities=10% Similarity=0.085 Sum_probs=383.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh----------------hhHhhh
Q 000098 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----------------QQLSQC 1496 (2256)
Q Consensus 1433 ~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p----------------~~l~~~ 1496 (2256)
+..||.....++..++...-+..++.+++.+++.+. .+...+..++.+|..+.+... +.+...
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~ 191 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE 191 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 468899999999999887555678889999998886 444567777888887775422 234556
Q ss_pred hhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchhH--HhHHHHHHhhhCCCChhHH-HHHHHHHhcc-c-ccCCC
Q 000098 1497 LPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTT-F-VNTVD 1570 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~-~-~~~~~ 1570 (2256)
++.+++.+..++.+ .++.++..+.+++..+..++..+.+ ..+++.+.+.+.. ++.++ .+++.+.... . .....
T Consensus 192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~-~~~~~~~a~~~L~~i~~~~~~~~~ 270 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT-SPDTRAITLKCLTEVSNLKIPQDN 270 (1049)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH-SHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC-CHhHHHHHHHHHHHHHhCCCCcch
Confidence 77888888888764 4578999999999998887764432 3566655532211 33444 3444443310 0 11110
Q ss_pred ---hhhHhh----HHHHHHH-h----------h---cCCCHHHHHHHHHHHHHHhh----hcCCCCcchhhhhhhhHHHH
Q 000098 1571 ---APSLAL----LVPIVHR-G----------L---RERSAETKKKAAQIVGNMCS----LVTEPKDMIPYIGLLLPEVK 1625 (2256)
Q Consensus 1571 ---~~~l~~----i~p~L~~-~----------L---~d~~~~vR~~a~~~l~~L~~----~l~~~~~l~~~l~~Ll~~L~ 1625 (2256)
...+.. ++..+.. . + .+.+.+.....+..+..+.+ .+..+....+++..+++.+.
T Consensus 271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll 350 (1049)
T 3m1i_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 011111 1221211 0 0 12234444455555544432 12222234567777888888
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhh--Cc---C----chHHHHHHHHHHhhcC---------C---------C---HHHH
Q 000098 1626 KVLVDPIPEVRSVAARAIGSLIRGM--GE---E----NFPDLVSWLLDALKSD---------N---------S---NVER 1675 (2256)
Q Consensus 1626 ~~L~d~~~~VR~~a~~aL~~L~~~~--g~---~----~~~~lip~Ll~~L~~~---------~---------~---~~~R 1675 (2256)
.+...++.++...+...+..+++.+ .+ . ++..+++.++..+.-. + + ...|
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~ 430 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHH
Confidence 8777888999999999999888743 11 1 3344555555544211 0 1 0234
Q ss_pred HHHHHHHHHHHHHhcHhHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhHhhhChhH-HHHHHHHHHHHHHhcC-----
Q 000098 1676 SGAAQGLSEVLAALGTVYFEHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA----- 1747 (2256)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~--~~~~~vR~~al~~l~~La~~~g~~f-~~yl~~ilp~Ll~~L~----- 1747 (2256)
..+...+..++...+.+.+..+++.+-+.+. +.+|..|++++.++|.++..++..- .++++.+++.+.....
T Consensus 431 ~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~ 510 (1049)
T 3m1i_C 431 KSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGK 510 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccc
Confidence 4555666666655555556666666666654 4689999999999999988776543 3567777777766432
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchH
Q 000098 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2256)
Q Consensus 1748 d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e 1827 (2256)
|+.+.+|..++.+++.+..-+...
T Consensus 511 ~~~~~v~~~~~~~lgry~~~~~~~-------------------------------------------------------- 534 (1049)
T 3m1i_C 511 DNKAVVASDIMYVVGQYPRFLKAH-------------------------------------------------------- 534 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHC--------------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHhH--------------------------------------------------------
Confidence 123334433444433322111100
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHH--------HHHHHHHHHHHHHhcCCCH
Q 000098 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--------EIMPVLMNTLISSLASSSS 1899 (2256)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~--------~~l~~Ll~~L~~~L~~~~~ 1899 (2256)
.+....++..++..+.|.+..|+..|..++..++..++..+. ++++.+++.+...+..-+.
T Consensus 535 -----------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~ 603 (1049)
T 3m1i_C 535 -----------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP 603 (1049)
T ss_dssp -----------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH
T ss_pred -----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 112233455555556677778888888888888887766664 8889998888877777777
Q ss_pred HHHHHHHHHHHHHHHhhCc-c----chhchHHHHhhhcC--------CC----Chhh-H--HhHHHHHHHHHHhhChhhh
Q 000098 1900 ERRQVAGRALGELVRKLGE-R----VLPSIIPILSRGLK--------DP----SASR-R--QGVCIGLSEVMASAGKSQL 1959 (2256)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~-~----~l~~llp~L~~~l~--------d~----~~~v-R--~~a~~aL~eii~~~~~~~l 1959 (2256)
..+....++++.++...+. . ++..+++.+.+.+. ++ ++.. + ...+.++..++...|.. +
T Consensus 604 ~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~-f 682 (1049)
T 3m1i_C 604 QQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD-F 682 (1049)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGG-G
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHH-H
Confidence 7778888999999988773 1 34444444432221 00 1111 1 23455566666666643 3
Q ss_pred HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch--------hhHHhHHHHHHHhhccCCchHHHHHHHHHHHhh
Q 000098 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM--------QAIDEIVPTLLHALEDDQTSDTALDGLKQILSV 2031 (2256)
Q Consensus 1960 ~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~--------~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~ 2031 (2256)
.|+.+.++..+...+.. ....+.......|. .....+.|.+++.++.-.... ..+..+.
T Consensus 683 ~p~~~~i~~~~l~~~~~--------~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~---~~l~~~~-- 749 (1049)
T 3m1i_C 683 YPQLGHIYYNMLQLYRA--------VSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA---RNLDDVV-- 749 (1049)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHH--
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHH--
Confidence 34444443332211110 00111111111121 123345555554443210000 0000111
Q ss_pred hcccchhhhh----hhhhcC-c--hhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhh-----C--CCCHHHHHHHHHH
Q 000098 2032 RTTAVLPHIL----PKLVHL-P--LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM-----G--DDDMDVQSLAKEA 2097 (2256)
Q Consensus 2032 ~~~~~lp~li----~~L~~~-p--~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l-----~--~~~~~vr~~a~~a 2097 (2256)
..++|.++ ..+... + ........++.++..+|+.+.++++.+++.++... . ++.+++|......
T Consensus 750 --~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~l 827 (1049)
T 3m1i_C 750 --KVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKL 827 (1049)
T ss_dssp --HHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHH
Confidence 01112221 111110 0 01235677888888889999999999998888764 2 3568999999999
Q ss_pred HHHHHhhcch-------hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchh----h-----hhhhHHHHHHHHHHH
Q 000098 2098 AETVTLVIDE-------EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL----Y-----LVDEAPNMISTLIVL 2161 (2256)
Q Consensus 2098 l~~l~~~~~~-------~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~----~-----~~~y~~~il~~L~~~ 2161 (2256)
+.+++..+.. ..+..+++..+..+++.++.+..+++..+..+...... + +..|...++..++..
T Consensus 828 l~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~ 907 (1049)
T 3m1i_C 828 LKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFV 907 (1049)
T ss_dssp HHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976532 22567778888889999999999999999988765331 1 344666777777777
Q ss_pred cCCCC-hHHHHHHHHHHHHhh
Q 000098 2162 LSDSD-STTVAAAWEALSRVV 2181 (2256)
Q Consensus 2162 l~D~d-~~Vr~~A~~aL~~l~ 2181 (2256)
+.|.. ...-+.-+..|..++
T Consensus 908 l~~~~h~s~~~~~~~~l~~l~ 928 (1049)
T 3m1i_C 908 LTDSDHKSGFSKQALLLMKLI 928 (1049)
T ss_dssp HHSTTCGGGHHHHHHHHHHHH
T ss_pred HhcchHhhhHHHHHHHHHHHH
Confidence 66553 334444445555543
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.61 E-value=3e-13 Score=180.35 Aligned_cols=388 Identities=14% Similarity=0.111 Sum_probs=280.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc---cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~---~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~ 1414 (2256)
.++.++..|. ++++.+|..|+.+|..++...... .+....+++.+.+.+.+.+++..|..|+.+++.++.......
T Consensus 75 ~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3666667664 446889999999999988755311 122336889999999887569999999999999987432211
Q ss_pred hHhHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhc-cCCChhHHHHHHHHHHHHHhh
Q 000098 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 1488 (2256)
Q Consensus 1415 ~pyv~-~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L-~~~~w~~R~~a~~~Lg~la~~ 1488 (2256)
...+. ..+|.++..+.++++.||+.|.+++..++...+.. .+ ...+|.++..+ .+.++.++..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 48899999999999999999999999998653321 12 24789999999 578999999999999999987
Q ss_pred ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC
Q 000098 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2256)
Q Consensus 1489 ~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~ 1568 (2256)
.|.........++|.++.++.+.++.|+..|+++|..++.... ...+.++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~----------------------------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAVI----------------------------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHHH-----------------------------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHH-----------------------------
Confidence 6544334557899999999999999999999999999985321 1111100
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCC-CHHHHHHHHHHHHHH
Q 000098 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSL 1646 (2256)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~-~~~VR~~a~~aL~~L 1646 (2256)
-..++|.+...+.+.++.++..++.++++++. +........+ ..++|.|..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc--CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 01245667777777788888899999999886 2211111111 35788999999998 999999999999999
Q ss_pred HHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhH---H--HHHHHHHHHhccCCCHHHHHHHH
Q 000098 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRASVRDGYL 1717 (2256)
Q Consensus 1647 ~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~---l--~~ll~~ll~~l~~~~~~vR~~al 1717 (2256)
+....+. .-..++|.|++.|.+. +..+|..++.+++.++.....+. + ...++.++..+.+.++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632111 1125678888888874 67799999999999987644442 2 36788999999999999999999
Q ss_pred HHHHHhHhhhCh----------hHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1718 TLFKYLPRSLGV----------QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1718 ~~l~~La~~~g~----------~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
.++..+....+. .+...+. ..++.+.....++++.++..|...+..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999988865533 1222222 2355666667777777877776665544
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.61 E-value=7.2e-13 Score=183.40 Aligned_cols=504 Identities=12% Similarity=0.076 Sum_probs=324.6
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH-hhhhhhH
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKI 1500 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l-~~~L~~I 1500 (2256)
+|.++..+.+++..+|.++...+...-.. .-....+|.++..+.+.+..+|..|+.+|+.++...+... ....+.+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 56677778888888988877776643211 1125678888888888999999999999999987543221 1123578
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHH
Q 000098 1501 VPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1501 vp~L~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
++.|+..|.+ .++.+|..|+.+|..++..-.+ ...+ . -...+|
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i----------------------~------------~~g~I~ 237 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAI----------------------F------------KSGGIP 237 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHH----------------------H------------HTTHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHH----------------------H------------HcCCHH
Confidence 8999998874 4899999999999998753110 0000 0 012567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----c
Q 000098 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----N 1654 (2256)
Q Consensus 1580 ~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~ 1654 (2256)
.+.+.+++.++.+|..|+.++.+++.. .......+ -...++.+..++.++++.++..+..++..++....+. .
T Consensus 238 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~--~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 238 ALVNMLGSPVDSVLFHAITTLHNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC--ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 777888888889999999999999873 21111122 2468899999999999999999999999877421100 1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH-hH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhH
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~-~~--l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f 1731 (2256)
-...++.|+..+++......+..++..+..++..-.. .. -...++.++..+.+.+..++..++.++..++......
T Consensus 316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~- 394 (780)
T 2z6g_A 316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ- 394 (780)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-
Confidence 1246788888888765554555555556655531111 11 1356788999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc--c--hhchHHHHHhhcCC-CCH-HHHHHHHHHHHHHHHh
Q 000098 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--S--LPLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1732 ~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~--~--~~~llp~L~~~l~d-~~~-~iR~~sv~llg~ll~~ 1805 (2256)
.....++|.++..+.++++.+|..|+.++..+...-... . -...+|.|.+.+.+ .++ .+|..++.+++.+...
T Consensus 395 -~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 395 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp -SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred -hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 123568999999999999999999999988775321100 0 01256677766654 333 8999999999887310
Q ss_pred hcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcChhHHH----
Q 000098 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLK---- 1880 (2256)
Q Consensus 1806 ~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~-~~Vr~aA~~~l~~l~~~~~~~l~---- 1880 (2256)
+.+ .+.....+... ..++.|...+.+.. ..+|..++.+++.++.+.. ...
T Consensus 474 --------------~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~ 528 (780)
T 2z6g_A 474 --------------HQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE 528 (780)
T ss_dssp --------------STT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHH
T ss_pred --------------Cch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 000 11111122111 13444555554444 5899999999998876322 111
Q ss_pred -HHHHHHHHHHHHH----------------hc--CCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChh
Q 000098 1881 -EIMPVLMNTLISS----------------LA--SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSAS 1938 (2256)
Q Consensus 1881 -~~l~~Ll~~L~~~----------------L~--~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~ 1938 (2256)
..+|.|+..+... +. ...++++..++.+|+.++...... .-...+|.|.+.+.++++.
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 608 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN 608 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHH
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHH
Confidence 1344444443221 00 012456777888888875311000 1245688888999888999
Q ss_pred hHHhHHHHHHHHHHhhChhhhHhhH--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000098 1939 RRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2256)
Q Consensus 1939 vR~~a~~aL~eii~~~~~~~l~~~l--~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~ 1996 (2256)
++..++.+|+.+... + .....+ ...++.+...+.+++++||+.|..++..+...-
T Consensus 609 v~~~a~~aL~~L~~~--~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 609 IQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcC--H-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999998887532 1 122222 236788888899999999999999999987643
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.61 E-value=1.3e-13 Score=183.74 Aligned_cols=381 Identities=13% Similarity=0.097 Sum_probs=285.1
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh---hH--HhHHHHHHHhccCC-ChhHHHHHHHHHHHHHhhChhhH
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~---~v--~~ilp~Ll~~L~~~-~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
..+|.++..+.++++.+|..|..++..++...... .+ ..++|.+++.+.+. ++.+|..|+.+|+.++...++..
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 44677777888889999999999999886543211 12 35799999999986 89999999999999998765443
Q ss_pred hhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hh-H-HhHHHHHHhhhCCCChhHH-HHHHHHHhcccc-
Q 000098 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PE-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFV- 1566 (2256)
Q Consensus 1494 ~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~-i-~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~- 1566 (2256)
.... ..++|.++.++.++++.||..|+++|+.++..-.. .. + ...+|.|+..+.+++..++ .++.+|......
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 2221 47889999999999999999999999999864211 11 1 4688999999988777765 455555542211
Q ss_pred -cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1567 -~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
..........++|.+.+.+.+.++.++..++.++++++.. .+....... ..+++.|..++.++++.+|..++.+|+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 2223345567889999999999999999999999999862 222222222 268899999999999999999999999
Q ss_pred HHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH-HHHHHHHHHhccCCCHHHHHHH
Q 000098 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGY 1716 (2256)
Q Consensus 1645 ~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l-~~ll~~ll~~l~~~~~~vR~~a 1716 (2256)
.++...+.. .-..++|.++..|.+. +..+|..++.+++.++.+.... .+ ..++|.++..+.++++.+|..+
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998532211 1135888898888874 6779999999999987533221 12 4678889999988999999999
Q ss_pred HHHHHHhHhhhCh--hHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----------chh-----chH
Q 000098 1717 LTLFKYLPRSLGV--QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----LLL 1777 (2256)
Q Consensus 1717 l~~l~~La~~~g~--~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----------~~~-----~ll 1777 (2256)
+.+++.++...++ ....++- .++|.++..+.++++.+|..++.++..++...... ... ..+
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 9999999987654 4444443 48999999999999999999999998887643321 011 136
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000098 1778 PAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1778 p~L~~~l~d~~~~iR~~sv~llg~ll 1803 (2256)
+.+.....+++..++..+..++..+.
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67777778889999999988887763
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.59 E-value=4.2e-13 Score=178.92 Aligned_cols=381 Identities=14% Similarity=0.106 Sum_probs=284.2
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhChhhH
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~Ll~~L~~~~-w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
.-+|.++..+.++++.+|..|..++..++..... ..+ ..++|.+++.+.+.+ +.+|..|+.+|+.++...++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3477788888888999999999999988765431 112 367999999998876 9999999999999998766543
Q ss_pred hhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhhh-CCCChhHH-HHHHHHHhcccc
Q 000098 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFV 1566 (2256)
Q Consensus 1494 ~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~Ll~~l-~d~~~~vr-~al~~L~~~~~~ 1566 (2256)
.... ...+|.++.++.++++.||..|+++|+.++..-.. ..+ ...+|.|+..+ .+++..++ .++.+|......
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3222 26899999999999999999999999999864221 112 35788899998 55666664 455555542211
Q ss_pred -cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1567 -~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
..........++|.+.+.+.+.++.++..++.++++++.. ........ -..+++.|..++.++++.+|..|+.+|+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 2233344567899999999999999999999999999852 21111111 2368899999999999999999999999
Q ss_pred HHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--H--HHHHHHHHHHhccCCCHHHHHHH
Q 000098 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y--FEHILPDIIRNCSHQRASVRDGY 1716 (2256)
Q Consensus 1645 ~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~--l~~ll~~ll~~l~~~~~~vR~~a 1716 (2256)
.++...... .-..++|.|...|.+..+..+|..++.+++.++...... . -..++|.++..+.+.++.+|..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998632211 113578999998887547789999999999988632221 1 13678999999988899999999
Q ss_pred HHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----------chh-----chHHH
Q 000098 1717 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----LLLPA 1779 (2256)
Q Consensus 1717 l~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----------~~~-----~llp~ 1779 (2256)
+.+++.++....+....++ ..+++.++..+.++++.++..++.++..++...... ... ..++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 9999999987666666666 368999999999999999999999999887643220 011 13455
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1780 VEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1780 L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
+.....+++..++..+..++..+
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 66667788889999888888776
No 36
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.58 E-value=8.4e-16 Score=184.31 Aligned_cols=254 Identities=10% Similarity=0.011 Sum_probs=184.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHHHHhhcCCCCCCCh--HhHH
Q 000098 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY--SGLF 1136 (2256)
Q Consensus 1059 ~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~~~~~~~~--~~ll 1136 (2256)
...|+.++++|.|++||+|..+|+++.+. ++.+.+.. ...+.| ++.++.|.+ +++.
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~------hG~GAGR~---~~~N~D-------------LAvRLLCVLALDRFG 233 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSE------IDNGGDIQ---IRVDSK-------------LFSKIYEILVTDKFN 233 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHH------CC----CC---CCCCTT-------------HHHHHHHHHHHBCCB
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHH------hccCCcee---ccccHH-------------HHHHHHHHHHhcccc
Confidence 45688999999999999999999988754 33222221 111112 222333333 5666
Q ss_pred HhhcC-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhccCChhH
Q 000098 1137 KALSH-SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPV 1215 (2256)
Q Consensus 1137 ~~l~~-~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~~~~~~ 1215 (2256)
+|+++ ..++||+++||+||.+ ...|+.. .++..+.. . ...+.|++|+|+.++|+|+.+++.. .+.
T Consensus 234 DYVSDqVVAPVRETaAQtLGaL-~hLp~e~-~IL~qLV~----~------l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~ 299 (800)
T 3oc3_A 234 DFVDDRTVAPVRDAAAYLLSRI-YPLIGPN-DIIEQLVG----F------LDSGDWQVQFSGLIALGYLKEFVED--KDG 299 (800)
T ss_dssp BCSSSSCBCHHHHHHHHHHHHH-TTTSCSC-CHHHHHTT----G------GGCSCHHHHHHHHHHHHHTGGGCCC--HHH
T ss_pred ccccCeeeeehHHHHHHHHHHH-HhCChhH-HHHHHHHh----h------cCCCCeeehhhhHHHHHHHHHHHHH--HHH
Confidence 77874 5899999999999999 7666552 33333331 1 1246799999999999999655543 677
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCC
Q 000098 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD 1295 (2256)
Q Consensus 1216 l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~ 1295 (2256)
+++.++ .||+|.+++||..|.++..-+. .++.++.++..+|.+|.+. .| -. .....+|.+|+.++.+-....
T Consensus 300 Vv~aVL-~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~L-DD-LS--ASTgSVMdLLAkL~s~p~~a~ 371 (800)
T 3oc3_A 300 LCRKLV-SLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESE-EL-IS--VSKTSNLSLLTKIYRENPELS 371 (800)
T ss_dssp HHHHHH-HHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTC-CS-CC--TTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHH-hhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhh-cc-cc--hhhHHHHHHHHHHHcCCcccc
Confidence 777764 7999999999999998877666 5677899999999999874 22 12 356788999999998743211
Q ss_pred cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000098 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLA 1363 (2256)
Q Consensus 1296 ~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~ 1363 (2256)
.-+.++++|...+.++...||.++.+++..+. ....+.-+++.+.-+++..+|..+...+.
T Consensus 372 -~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 -IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp -CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11267899999999999999999999887665 45677788888888888888887777664
No 37
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.57 E-value=6.5e-10 Score=156.02 Aligned_cols=587 Identities=11% Similarity=0.067 Sum_probs=352.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhccC----ChhHhH
Q 000098 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK----DLPVIM 1217 (2256)
Q Consensus 1142 ~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~~----~~~~l~ 1217 (2256)
+++..|+.|-+-|.. .+..|+.|......|... ...+.++|..++..|+.....++.+ +...+.
T Consensus 20 sd~~~r~~A~~~L~~-~q~sp~aw~~~~~iL~~~-----------~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr 87 (980)
T 3ibv_A 20 VGPIIKQQATDFIGS-LRSSSTGWKICHEIFSEK-----------TKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR 87 (980)
T ss_dssp SCHHHHHHHHHHHHH-HHHSTTHHHHHHHHTTCT-----------TTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HHcChhHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH
Confidence 378888888777754 456688887666555321 1114689999999999888766666 555555
Q ss_pred HHHHHh--hcC--CCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhcc
Q 000098 1218 TFLISR--ALA--DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293 (2256)
Q Consensus 1218 ~~lv~~--~l~--D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~ 1293 (2256)
++++.. ... +....||.....+...++....++.|+.+++-+...+..... +......+..+..+.+.+..
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~-----~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ-----SEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh-----hHHHHHHHHHHHHhHHHHHh
Confidence 555421 121 346789999999988888887788999999988887764211 01122333444444455422
Q ss_pred CC-c-------c------------hHHHHHHHHHHc----CCCCHHHHHHHHHhhHHhHHhhcCch---HHHHHHHHHHH
Q 000098 1294 DD-P-------K------------VHAVVDKLLDVL----NTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQL 1346 (2256)
Q Consensus 1294 ~~-~-------~------------i~~il~~Ll~~L----~~~~~~Vq~~~~~~L~~lv~~~~~~~---~~~l~~Ll~~L 1346 (2256)
.. + + ++.+++..+..| ..+++.++..+.+|+...+.-..... ..+++.++..|
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc
Confidence 11 0 0 122233333333 23566777778888887776432111 46676667555
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHH--HHHH----hCCCCHHHHHHHHHHHHHHHHHhc---c-----
Q 000098 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL--REGL----ADRNSAKRREGALLAFECLCEKLG---R----- 1412 (2256)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L--~~~l----~~~~~~~~Re~al~al~~L~~~l~---~----- 1412 (2256)
. +...|..|+.||..++..... .-....++..+ .+.+ .++.|.+.+++....+..+++.+- +
T Consensus 243 ~---~~~~r~~A~ecL~ei~~k~~~-~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 243 Q---IEELRCAACETMTEIVNKKMK-PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp T---SHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred C---ChHHHHHHHHHHHHHHHcCCC-hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3 368999999999999876432 11112233222 1112 113466666655555544443311 0
Q ss_pred ------CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh---H-----hhH----HhHHHHHHHhcc---CCC
Q 000098 1413 ------LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---A-----QGV----KLVLPSLLKGLE---DKA 1471 (2256)
Q Consensus 1413 ------~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~---~-----~~v----~~ilp~Ll~~L~---~~~ 1471 (2256)
...+++..++|.++.++++++.+|-..+..-+..+...+. . ... ..+++.++..+. +.+
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 1126777899999999999999888777666665543321 1 112 344444444442 223
Q ss_pred hh-------------HHHHHHHHHHHHHhhChhhHhhhhh-hHHHHHHHhhc---CCCHHHHHHHHHHHHHHHhhcCchh
Q 000098 1472 WR-------------TKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKNPE 1534 (2256)
Q Consensus 1472 w~-------------~R~~a~~~Lg~la~~~p~~l~~~L~-~Ivp~L~~~L~---D~~~~VR~aA~~aL~~l~~~i~~~~ 1534 (2256)
|. -|+....++..++-..|+....++- .+.+.+.+.+. +.++..++++..+|+.+++.+++..
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~ 478 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPD 478 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGG
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 31 3444334444444445554333111 33344444442 3457889999999999998776421
Q ss_pred HHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhhcCC
Q 000098 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-----ERSAETKKKAAQIVGNMCSLVTE 1609 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~-----d~~~~vR~~a~~~l~~L~~~l~~ 1609 (2256)
.. . ....+.++.+++.+.+.+. +..+.+|..++.+++..++.+..
T Consensus 479 ~~-----------------------------~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~ 528 (980)
T 3ibv_A 479 AF-----------------------------F-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY 528 (980)
T ss_dssp GT-----------------------------B-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT
T ss_pred cc-----------------------------c-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 10 0 0001122234444444433 56789999999999999987654
Q ss_pred CCcchhhhhhhhHHHHH--hhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcC----C----------
Q 000098 1610 PKDMIPYIGLLLPEVKK--VLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD----N---------- 1670 (2256)
Q Consensus 1610 ~~~l~~~l~~Ll~~L~~--~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~----~---------- 1670 (2256)
.. .|++.+++.+.. .+.++++.||..|+.++..+++..+.. |.+.++..+...|.-. .
T Consensus 529 ~~---~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 529 ES---AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp CC---TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred Cc---hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 32 577888888888 888999999999999999999988754 4555665555444421 1
Q ss_pred ------CHHHHHHHHHHHHHHHHHhcH--h----HHHHHHHHHHHhcc----CC----CHHHH-HHHHHHHHHhHhhhCh
Q 000098 1671 ------SNVERSGAAQGLSEVLAALGT--V----YFEHILPDIIRNCS----HQ----RASVR-DGYLTLFKYLPRSLGV 1729 (2256)
Q Consensus 1671 ------~~~~R~~aa~~L~~i~~~~g~--~----~l~~ll~~ll~~l~----~~----~~~vR-~~al~~l~~La~~~g~ 1729 (2256)
....+.....++|.++...+. + +++.+++.+++.+. .. +...+ ...+.+++.+++.+..
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~ 685 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA 685 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence 122466778889999987652 1 55666666554432 21 11111 2456777888887643
Q ss_pred h------HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhh
Q 000098 1730 Q------FQNYLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG 1783 (2256)
Q Consensus 1730 ~------f~~yl~~ilp~Ll~~L~--d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~ 1783 (2256)
. ....+.++++.++..+. ..+..||+++..++..++..++.. +..++|.+.+.
T Consensus 686 ~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~~ 746 (980)
T 3ibv_A 686 RGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLISI 746 (980)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHHH
Confidence 2 45566778888877665 456899999999999999888876 33355555443
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.57 E-value=7e-13 Score=176.77 Aligned_cols=389 Identities=13% Similarity=0.091 Sum_probs=283.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhhhhhHHHHHhhcCC-CHHHHHHHHHHHHHHHHhhCcC
Q 000098 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~~Ll~~L~~~L~d~-~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
..+|.+...+.+.++.+|..|+..+.++...-.. ..... .-..++|.|..++.++ ++.+|..|+.+|+.++....+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3467778888888899999999999988752111 11111 1246889999999987 8999999999999988632111
Q ss_pred --c--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH--h--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHh
Q 000098 1654 --N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--V--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2256)
Q Consensus 1654 --~--~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~ 1725 (2256)
. -...+|.|+..|.+ .+..+|..++.+|+.++..... . .-...++.++..+.+.++.+|..++.+++.++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 1 13568888888886 5677999999999998753211 1 124688999999999999999999999999986
Q ss_pred hh-ChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc---cch-hchHHHHHhhcCCCCHHHHHHHHHHHH
Q 000098 1726 SL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSL-PLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2256)
Q Consensus 1726 ~~-g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~---~~~-~~llp~L~~~l~d~~~~iR~~sv~llg 1800 (2256)
.. +..-......++|.++..+.++++.+|..++.++..+...... ..+ ..++|.|.+.+.+.+|.+|..++.+++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 54 2222345578899999999999999999999999887642111 011 247888999999999999999999999
Q ss_pred HHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHH
Q 000098 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2256)
Q Consensus 1801 ~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~ 1880 (2256)
.+... .+...+.+.+ ..+++.|...+.+.+..+|..|+.+++.++.+.+....
T Consensus 325 ~l~~~--------------------~~~~~~~~~~-------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 325 NIVTG--------------------NDLQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp HHTTS--------------------CHHHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHcC--------------------CHHHHHHHHH-------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88410 0011111111 13566677777888899999999999999887766555
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCc--c-----chhchHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000098 1881 EIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--R-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2256)
Q Consensus 1881 ~~l-~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~--~-----~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2256)
.++ ..+++.++..+.++++.+|..|+++|+.++...+. . .-..++|.|...+.++++.+|..++.+|..++.
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444 24556666667788999999999999999986543 2 124578889999988899999999999998886
Q ss_pred hhChhh------hHhhHh-----hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1953 SAGKSQ------LLSFMD-----ELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1953 ~~~~~~------l~~~l~-----~li~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
...... ..+|.. ..++.+.....+++++|++.|..++..++
T Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 458 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 543210 112222 24667777778899999998887776654
No 39
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.55 E-value=1.8e-09 Score=151.52 Aligned_cols=545 Identities=12% Similarity=0.074 Sum_probs=308.1
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh----h
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----L 1208 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~----~ 1208 (2256)
+.++..+.+++...|+.|.+.|. -.+..|+.|......|... .+.++|..|+..|+..... +
T Consensus 19 e~av~~ly~p~~~~r~~A~~~L~-~~q~sp~aw~~~~~iL~~s-------------~~~~vR~faa~~Lk~~I~~~W~~L 84 (1023)
T 4hat_C 19 DQVVSTFYQGSGVQQKQAQEILT-KFQDNPDAWQKADQILQFS-------------TNPQSKFIALSILDKLITRKWKLL 84 (1023)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH-HHHHCTTGGGGHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHhCCChHHHHHHHHHHH-HHHcCccHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHHhhhhcC
Confidence 55666665666677877777774 4567788888776655321 2348999999999988764 3
Q ss_pred ccCChhHhHHHHHH---hhcCCC-----CHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHH
Q 000098 1209 RTKDLPVIMTFLIS---RALADT-----NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2256)
Q Consensus 1209 ~~~~~~~l~~~lv~---~~l~D~-----~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~a 1280 (2256)
+.++...+.++++. +...++ +..++.....+...++...-++.|+.+++-+...+.. + . ..++.+
T Consensus 85 ~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~--~---~--~~~~~~ 157 (1023)
T 4hat_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS--S---V--NVCENN 157 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT--C---H--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC--C---H--HHHHHH
Confidence 33333334444432 111222 4667777888888888777678899999988887653 1 1 345677
Q ss_pred HHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHH
Q 000098 1281 VIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA 1359 (2256)
Q Consensus 1281 v~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa 1359 (2256)
+..|..|.+.+... ...+ ...-+...-.. +...++.++..+...+.......+...+.
T Consensus 158 L~iL~~L~EEV~~~~~~~l--------------~~~r~~~lk~~-------l~~~~~~I~~ll~~iL~~~~~~~l~~~~L 216 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAEQM--------------TQAKALHLKNS-------MSKEFEQIFKLCFQVLEQGASSSLIVATL 216 (1023)
T ss_dssp HHHHHHHHHHHHTSCTTTS--------------CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccc--------------hHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77887777664220 0000 00000000000 01113333333334443444557778888
Q ss_pred HHHHHHHhhhCcccchhhcHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHH-h-cc--CchHhHHHHHHHHHHHc----C
Q 000098 1360 FGLAGVVKGFGISSLKKYGIAATLR-EGLADRNSAKRREGALLAFECLCEK-L-GR--LFEPYVIQMLPLLLVAF----S 1430 (2256)
Q Consensus 1360 ~~L~~lv~~~g~~~~~~~~il~~L~-~~l~~~~~~~~Re~al~al~~L~~~-l-~~--~~~pyv~~llp~ll~~l----~ 1430 (2256)
.+++..+.......+...++++.+. ..+. ++..|+.|+.++..+... . ++ .+...+..+++.++..+ -
T Consensus 217 ~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~ 293 (1023)
T 4hat_C 217 ESLLRYLHWIPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1023)
T ss_dssp HHHHHHTTTSCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999887665544457888888 6665 567899988887777641 1 11 12223333333322211 1
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH------hhhhhhHHHHH
Q 000098 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKL 1504 (2256)
Q Consensus 1431 D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l------~~~L~~Ivp~L 1504 (2256)
......+.+ +....+.+...-.+-+.++..+.+.....+ ...+...+..+
T Consensus 294 p~~~~l~~~------------------------~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~L 349 (1023)
T 4hat_C 294 PVTADLKAT------------------------YANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1023)
T ss_dssp CTTCCHHHH------------------------HHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHH
T ss_pred CCcchHHHH------------------------HhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 111111100 000000011111111222222222211111 11111222344
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhcC---------chhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC-CChhhH
Q 000098 1505 TEVLTDTHPKVQSAGQTALQQVGSVIK---------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT-VDAPSL 1574 (2256)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~i~---------~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~-~~~~~l 1574 (2256)
+.+...++.+|-..++.-...+.+.+- .|.+..+++.+++.+.-|.+.. .+.. .+.. .
T Consensus 350 l~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~-----------ive~d~~~~-~ 417 (1023)
T 4hat_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL-----------VVENDEGEI-V 417 (1023)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC-----------EEECTTSCE-E
T ss_pred HHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc-----------cCCCCCccH-H
Confidence 444455566676666666655554321 1334567777777776664210 0000 0000 0
Q ss_pred hhHHHHHHHhhcCCCHHHH-HHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhC
Q 000098 1575 ALLVPIVHRGLRERSAETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMG 1651 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR-~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g 1651 (2256)
.....|.+.... +..-.++..++.+.+ ...++.+++.+.+.+.+ .+|..|+++.-|+|++++++.
T Consensus 418 -------~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-----~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~ 485 (1023)
T 4hat_C 418 -------REFVKESDTIQLYKSEREVLVYLTHLNV-----IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485 (1023)
T ss_dssp -------ECSSCCGGGHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSC
T ss_pred -------HHhccchHHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 000000000000 011145555555322 12344566666666653 689999999999999998775
Q ss_pred cC----chHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHHhc--HhHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 000098 1652 EE----NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALG--TVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721 (2256)
Q Consensus 1652 ~~----~~~~lip~Ll~~L~~----~~~~~~R~~aa~~L~~i~~~~g--~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~ 1721 (2256)
++ +++.++|.|++.+.. +....+|..++..+|.+.+-+. .+++++++..++..+.++++.+...++.+|.
T Consensus 486 ~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~ 565 (1023)
T 4hat_C 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFI 565 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 43 566778877776653 2233455566677777666543 4578999999999998889999999999999
Q ss_pred HhHhhhChhHH--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1722 YLPRSLGVQFQ--------NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1722 ~La~~~g~~f~--------~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
.++...+..+. ||++.++..+.....+-.+.-+..+.+++..+++..+.
T Consensus 566 ~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 99998888773 69999998888887766677777888888888876653
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.55 E-value=1.4e-11 Score=168.11 Aligned_cols=467 Identities=14% Similarity=0.073 Sum_probs=318.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh--HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY--VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py--v~~llp~ll~~l~D-~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
..++.+.+.+.++ ++.+|+.|+.++..++..... .... ...+++.++..+.+ +++.+|..|..++..+...-...
T Consensus 14 g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~-~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 14 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTH-HHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChh-HHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 5677777777765 899999999999999875431 1111 13567788877765 48899999999998776542211
Q ss_pred -hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~-L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
.+ ...+|.+++.+.+.+..+|..|+.+|+.++...+...... -..++|.++.++.+.+++++..++.+|..++...
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 11 3478999999999999999999999999998754332222 2578999999999999999999999999998532
Q ss_pred Cch--hH--HhHHHHHHhhhCCCCh-hHH-HHHHHHHhcccccCCCh-hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1531 KNP--EI--ASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDA-PSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2256)
Q Consensus 1531 ~~~--~i--~~lv~~Ll~~l~d~~~-~vr-~al~~L~~~~~~~~~~~-~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L 1603 (2256)
... .+ ...++.|+..+.+++. ..+ .+...|........... -.-...+|.+.+.+.+.+..++..++.++.++
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 11 3567888888887653 333 34444443222111100 01124678888899888999999999999999
Q ss_pred hhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCC-CHHHHHHH
Q 000098 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDN-SNVERSGA 1678 (2256)
Q Consensus 1604 ~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~-~~~~R~~a 1678 (2256)
+..... . .....+++.|..++.++++.+|..++.+|+.++..-.+. .-...++.|++.+.+.. ...++..+
T Consensus 252 ~~~~~~-~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 252 SDAATK-Q---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp GGGCTT-C---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcchh-h---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 874211 1 223468899999999999999999999999997632110 11247888888887643 36789999
Q ss_pred HHHHHHHHHHhcHh------H-HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcCCC
Q 000098 1679 AQGLSEVLAALGTV------Y-FEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADE 1749 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~------~-l~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~d~ 1749 (2256)
+.+++.+....+.. . ....++.+++.+.+++ +.+|..++.+++.++..-... .... ..++|.++..+.+.
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhcc
Confidence 99999886433321 1 1357889999998874 799999999999988643322 1121 34677777666543
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHHhhcc-c--hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1750 ----------------------NESVRDAALGAGHVLVEHYATT-S--LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2256)
Q Consensus 1750 ----------------------~~~VR~~Al~al~~iv~~~~~~-~--~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~ 1804 (2256)
++.++..++.++..+...-... . -...+|.+.+.+.+.+..++..++..++.+..
T Consensus 407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2456667777776554211100 0 12367888888999999999999988888741
Q ss_pred hhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHH
Q 000098 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2256)
Q Consensus 1805 ~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l 1879 (2256)
. .+ . .......| .+..|.....+.+..||..|..++..+..+.+...
T Consensus 487 ~--------------------~~-~-~~~i~~~g------~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 487 D--------------------KE-A-AEAIEAEG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp S--------------------HH-H-HHHHHHTT------CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred C--------------------HH-H-HHHHHHcC------ChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 0 00 1 11111112 24455666778899999999999998877665433
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.55 E-value=3.4e-12 Score=174.11 Aligned_cols=462 Identities=11% Similarity=0.059 Sum_probs=315.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-ccc
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSL 1374 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-----~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~-~~~ 1374 (2256)
.++.|+..|.++++.+|..++.+|..+...... .....++.++..|.++++..+|+.|+.+|..+...... ..+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 357777778889999999999998888754321 12367888888887776789999999999987754211 111
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
.....++.+.+.+.+. ++..+..++.++..++.........+. ...+|.++..+.+++..++..+..++..++...+.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 1235788888888776 789999999999999887543233333 36899999999999999998888888888753222
Q ss_pred h--hH--HhHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000098 1454 Q--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1454 ~--~v--~~ilp~Ll~~L~~~~-w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2256)
. .+ ...++.+++.+.+.+ ...+..++.+|..++.+....-.-.-...++.++.++.+.++.++..++++|..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 11 245778888887543 556777888888888643211111113578999999999999999999999999976
Q ss_pred hcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000098 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2256)
Q Consensus 1529 ~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~ 1608 (2256)
...... ....++|.+.+.+.+.++++|..++.++.+++..
T Consensus 254 ~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 254 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp GCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred cchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 432110 0113456666677777788888888888888752
Q ss_pred CCCcchh-hhhhhhHHHHHhhcCC--CHHHHHHHHHHHHHHHHhhCcC-------chHHHHHHHHHHhhcCCCHHHHHHH
Q 000098 1609 EPKDMIP-YIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2256)
Q Consensus 1609 ~~~~l~~-~l~~Ll~~L~~~L~d~--~~~VR~~a~~aL~~L~~~~g~~-------~~~~lip~Ll~~L~~~~~~~~R~~a 1678 (2256)
.+..... .-...++.|..++.+. .+.+|..++.+|+.++...++. .....+|.|.+.|.++.+..++..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 2111111 1124677777777653 3899999999999997532221 0124788999999876666789999
Q ss_pred HHHHHHHHHHhcHh-H--HHHHHHHHHHhccCC----------------------CHHHHHHHHHHHHHhHhhhChhHHH
Q 000098 1679 AQGLSEVLAALGTV-Y--FEHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~-~--l~~ll~~ll~~l~~~----------------------~~~vR~~al~~l~~La~~~g~~f~~ 1733 (2256)
+..++.+...-... . -...+|.+++.+.+. +..++..++.++..++........-
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l 453 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 453 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 98888876422111 1 134566666655442 3456677777777776543221111
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh-ccch--hchHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000098 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~-~~~~--~~llp~L~~~l~d~~~~iR~~sv~llg~ll 1803 (2256)
.-...+|.+...+.+.++.++..+..++..+...-. ...+ ...++.|.+.+.+++..+|..+..+++.+.
T Consensus 454 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 123578999999999999999999988877653200 0001 124677888889999999999999999874
No 42
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.55 E-value=2.7e-12 Score=171.34 Aligned_cols=458 Identities=11% Similarity=0.061 Sum_probs=303.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-ccc
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSL 1374 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-----~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~-~~~ 1374 (2256)
.++.++..|.++++.+|..++.+|..+...... .....++.++..|.+++++.+|+.|+.+|..+...... ..+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 467778888889999999999988877643211 12357888888887776799999999999988754211 111
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
.....++.+.+.+.++ ++..+..++.++..++...+..-.... ...+|.++..+.+++..+|..+..++..++...+.
T Consensus 98 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 1236788888888776 689999999999999887543222222 35789999999999999999998888877643211
Q ss_pred h--hH--HhHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1454 Q--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1454 ~--~v--~~ilp~Ll~~L~~~~-w~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
. .+ ...+|.+++.+.+.+ ...+..++.+|..++.+ ++.-.. .-...+|.+...+.+.++.++..++++|..++
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 1 11 245777777777543 44555677888888753 221111 11368899999999999999999999999998
Q ss_pred hhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1528 ~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
....... ....++|.+.+.+.+.++++|..++.++++++..
T Consensus 256 ~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~- 296 (529)
T 1jdh_A 256 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 296 (529)
T ss_dssp TTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-
T ss_pred cCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 6432110 0113556666777777788888888888888752
Q ss_pred CCCCcchhh-hhhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhCcC-------chHHHHHHHHHHhhcCCCHHHHHH
Q 000098 1608 TEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2256)
Q Consensus 1608 ~~~~~l~~~-l~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g~~-------~~~~lip~Ll~~L~~~~~~~~R~~ 1677 (2256)
++...... -...++.+...+.+ .++.+|..+..+|+.++...++. .-...+|.+.+.|.++.+..+|..
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 21111111 12356777777764 45899999999999986532221 011357888888887666678899
Q ss_pred HHHHHHHHHHHhcHh-HH--HHHHHHHHHhccCCCHHHHHHHHH----------------------HHHHhHhhhChhHH
Q 000098 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYLT----------------------LFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1678 aa~~L~~i~~~~g~~-~l--~~ll~~ll~~l~~~~~~vR~~al~----------------------~l~~La~~~g~~f~ 1732 (2256)
++..++.+...-... .+ ..++|.++..+.+.++.+|..+++ ++..++... +..
T Consensus 376 a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~~~ 453 (529)
T 1jdh_A 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNR 453 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--hHH
Confidence 998888887432111 11 356778887777666666654443 333333221 111
Q ss_pred HHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--hhccc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH--YATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1733 ~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~--~~~~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
..+ ...+|.+...+.++++.++..+..++..+... +.... -...++.|.+.+.+++..+|..+...+..+
T Consensus 454 ~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 111 24678999999999999999999888776421 10000 012567888888899999999888877654
No 43
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=2.5e-13 Score=160.95 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=165.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-ccchhhcHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhccCchHhHH
Q 000098 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2256)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~-~~~~~~~il~~L~~~l~-~~~~~~~Re~al~al~~L~~~l~~~~~pyv~ 1419 (2256)
+++.+ ++.+|.+|++|+.+|..++.+.+. .......+++.+...+. +. +..+|.+++.+++.++..++..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444 577899999999999999998432 11112368888888885 54 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC-hh-hHhhhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~-p~-~l~~~L 1497 (2256)
.++|.++..++|++..||+++..++..++...+ ++.++|.+...+.+.+|++|..++..|+.++... |+ ....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999987654 5789999999999999999999999999987665 55 356789
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000098 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv 1539 (2256)
+.++|.+..+++|++++||.+|..+++.++..+++..+..++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999999999999999999998865454433
No 44
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.9e-13 Score=159.79 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=169.5
Q ss_pred cCCCHHHHHHHHHHHHH-HHhhhCcc---cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-cCch-HhHHHH
Q 000098 1348 KSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQM 1421 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~-lv~~~g~~---~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~-~~~~-pyv~~l 1421 (2256)
.+.+|..|++|...|.. ++.+...- ......++..+.+.+.++.+..+|..|+.+++.++++++ ..|+ +|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 56789999999999999 88653211 111236888888899555589999999999999999999 8899 999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh---h-HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh---hhHh
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~---~-v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p---~~l~ 1494 (2256)
+|.++..++|....||+++..++..++..+++. . ++.+++.++..+.+++|++|.+++.+|+.++...+ ..+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 999999999999999999999999999887542 1 56789999999999999999999999999999887 6688
Q ss_pred hhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000098 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2256)
Q Consensus 1495 ~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L 1542 (2256)
.++ +.++|.+.+++.|+++.||.+|..+++.++..+++..+..+++.|
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 999999999999999999999999999999999987776666554
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.51 E-value=4.3e-12 Score=169.33 Aligned_cols=482 Identities=12% Similarity=0.048 Sum_probs=310.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~D-~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
..++.+.+.+.++ ++..|+.|..++..++..... ....+ ...++.++..+.+ +++.+|..+..++..+...-...
T Consensus 17 ~~i~~Lv~lL~~~-~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 17 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp CHHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSHHH-HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCcc-HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 5677777777765 899999999999988754321 11111 2467777777654 47899999999999876542211
Q ss_pred -hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~-L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
.+ ...+|.+++.+.+++..++..++.+|+.++...+...... -...+|.++.++.+++++++..++.+|..++..-
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 11 3578999999999999999999999999998754432111 2478999999999999999999999999887521
Q ss_pred Cc--hhH--HhHHHHHHhhhCCCChhH-H-HHHHHHHhcccccCCCh-hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1531 KN--PEI--ASLVPTLLMGLTDPNDHT-K-YSLDILLQTTFVNTVDA-PSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2256)
Q Consensus 1531 ~~--~~i--~~lv~~Ll~~l~d~~~~v-r-~al~~L~~~~~~~~~~~-~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L 1603 (2256)
.. ..+ ...++.|+..+.+++... + .+...+........... -.-...+|.+.+.+.+.++.++..++.++.++
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 11 111 345677777776654432 2 23444333222111000 01135688888999999999999999999999
Q ss_pred hhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcC-CCHHHHHHH
Q 000098 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD-NSNVERSGA 1678 (2256)
Q Consensus 1604 ~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~-~~~~~R~~a 1678 (2256)
+..... . ......+|.+..++.++++.+|..++.+++.++..-.+. .-...+|.+++.+.+. ....++..+
T Consensus 255 ~~~~~~-~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a 330 (529)
T 1jdh_A 255 SDAATK-Q---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330 (529)
T ss_dssp HTTCTT-C---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCChh-h---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHH
Confidence 974221 1 123568899999999999999999999999997531100 1124678888888763 346788899
Q ss_pred HHHHHHHHHHhcHh-----H--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcCCC
Q 000098 1679 AQGLSEVLAALGTV-----Y--FEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADE 1749 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~-----~--l~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~d~ 1749 (2256)
+.+++.+....+.. . -...+|.++..+.+++ +.+|..++.+++.++...... .... ..++|.++..+.+.
T Consensus 331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~ 409 (529)
T 1jdh_A 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA 409 (529)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHH
Confidence 99999886533221 1 1356888999998876 699999999999988643222 2222 35789999998888
Q ss_pred CHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHH
Q 000098 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2256)
Q Consensus 1750 ~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~ 1829 (2256)
++.+|..+..++.... +... . ....++..++..++.+.. + .+ .
T Consensus 410 ~~~v~~~a~~~l~n~~--~~~~------------~--~~~~i~~~~~~al~~L~~---------------~-----~~-~ 452 (529)
T 1jdh_A 410 HQDTQRRTSMGGTQQQ--FVEG------------V--RMEEIVEGCTGALHILAR---------------D-----VH-N 452 (529)
T ss_dssp HHHHC-------------CBTT------------B--CHHHHHHHHHHHHHHHTT---------------S-----HH-H
T ss_pred hHHHHHHHhcccCchh--hhcc------------c--cHHHHHHHHHHHHHHHhc---------------C-----ch-H
Confidence 8888887777655411 1100 0 112344455555555521 0 00 0
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHH
Q 000098 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP--VLMNTLISSLASSSSERRQVAGR 1907 (2256)
Q Consensus 1830 ~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~--~Ll~~L~~~L~~~~~~~R~~A~~ 1907 (2256)
...+.+ ...++.+...+.|.+..++..+..++..+... +.. ...+. ..++.+...+.++++++|..|..
T Consensus 453 ~~~l~~-------~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-~~~-~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~ 523 (529)
T 1jdh_A 453 RIVIRG-------LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEA-AEAIEAEGATAPLTELLHSRNEGVATYAAA 523 (529)
T ss_dssp HHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHH-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHHhc-------cCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-HHH-HHHHHHcCChHHHHHHhcCCCHHHHHHHHH
Confidence 111111 12455666677888899999999988887643 222 22221 23455556667778888888877
Q ss_pred HHHHH
Q 000098 1908 ALGEL 1912 (2256)
Q Consensus 1908 aL~~l 1912 (2256)
+|..+
T Consensus 524 aL~~l 528 (529)
T 1jdh_A 524 VLFRM 528 (529)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.51 E-value=9e-12 Score=167.96 Aligned_cols=505 Identities=13% Similarity=0.070 Sum_probs=313.2
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000098 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2256)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~ 1505 (2256)
-..+.+++...|..+..-+ +.-.+-++.+...++.+++.+.+++...|+.+...+..++...++.. .-++..+.
T Consensus 40 r~~l~~~~~~~k~~~l~kl--i~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~in~l~ 113 (618)
T 1w63_A 40 RSSFREEDNTYRCRNVAKL--LYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMTNCIK 113 (618)
T ss_dssp HHHHTTTCTTTHHHHHHHH--HHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHH--HHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHHHHHH
Confidence 3344444444444432222 22223344456677778888888999999888877777766554422 24566777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHh
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2256)
+-++|+++.+|..|.++|+.++. ....+.+++.+.+.+.|++..+|. |+.++....- ........+++.+...
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~---~~p~~v~~~~~~l~~l 187 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR---KVPELMEMFLPATKNL 187 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---HCGGGGGGGGGGTTTS
T ss_pred HhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HChHHHHHHHHHHHHH
Confidence 88899999999999999988862 223478889999999999999974 5555443110 0112233566777888
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc---------------CCCHHHHHHHHHHHHHHHHh
Q 000098 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1585 L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~---------------d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
+.|.++.++..|+.++..++.. +++ ...++..++|.+...+. .+++..+....++++.++..
T Consensus 188 L~D~d~~V~~~Al~~L~~i~~~--~~~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 188 LNEKNHGVLHTSVVLLTEMCER--SPD-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCS--HHH-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred hCCCCHhHHHHHHHHHHHHHHh--ChH-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 8999999999999888888752 211 12234455565555443 24788888888888887753
Q ss_pred hCc--CchHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHh
Q 000098 1650 MGE--ENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2256)
Q Consensus 1650 ~g~--~~~~~lip~Ll~~L~~~--~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~ 1725 (2256)
-.. +.+.++++.+....... .+..+...++.++..+.. ........++.+...+.++++.+|..++.+++.++.
T Consensus 265 ~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~ 342 (618)
T 1w63_A 265 DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQ 342 (618)
T ss_dssp CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 110 01222333333221111 122345555555544211 112223456677777888899999999999999988
Q ss_pred hhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1726 ~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
..+..+.+| .+.++.++.|++..||..|++.+..++. ...+..+++.+.+.+.+.+..+|..++..+|.+..+
T Consensus 343 ~~p~~~~~~----~~~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 343 TDHNAVQRH----RSTIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHGGG----HHHHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred hCHHHHHHH----HHHHHHHccCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 765544444 4567778899999999999888776643 344667888888888888899999999999998643
Q ss_pred hcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 000098 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2256)
Q Consensus 1806 ~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~ 1885 (2256)
.++ ..+ ..+..+...+.+....++..+...+..++.+.|......++.
T Consensus 416 ~~~----------------~~~----------------~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~ 463 (618)
T 1w63_A 416 YAP----------------SKR----------------WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQR 463 (618)
T ss_dssp SCC----------------CHH----------------HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHH
T ss_pred hCc----------------cHH----------------HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 110 011 112222222222222344445556666666666544456666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc---------ch-hchHHHHhhhcC--CCChhhHHhHHHHHHHHHHh
Q 000098 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGER---------VL-PSIIPILSRGLK--DPSASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1886 Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---------~l-~~llp~L~~~l~--d~~~~vR~~a~~aL~eii~~ 1953 (2256)
+...+.... .... ....+++++|+.+..+... .. ..+++.+...+. ..++.+|..+..++..+...
T Consensus 464 L~~~l~~~~-~~~~-~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 464 LYKAILGDY-SQQP-LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHHCC-SCSH-HHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccc-ccHH-HHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 666554211 2233 4456899999998865321 11 223444444332 45788999998888877765
Q ss_pred hChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1954 ~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
.+. ..+.+...+.....|.+.+||+.|...+..+.
T Consensus 542 ~~~-----~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 542 FTC-----TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CSS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred Ccc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 432 12334455556678899999999987666553
No 47
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.44 E-value=2.3e-10 Score=154.17 Aligned_cols=476 Identities=14% Similarity=0.106 Sum_probs=308.0
Q ss_pred cCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1332 ~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
|.+........+..+ .++++..|+-+..++..++..- ++.. ..+++.+.+-+.+. ++.+|..|+.+++.+..
T Consensus 65 G~d~~~~~~~vik~~-~s~~~~~Krl~Yl~~~~~~~~~-~e~~--~l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~--- 136 (618)
T 1w63_A 65 GYPAHFGQLECLKLI-ASQKFTDKRIGYLGAMLLLDER-QDVH--LLMTNCIKNDLNHS-TQFVQGLALCTLGCMGS--- 136 (618)
T ss_dssp TCCCGGGHHHHHHHH-HSSSHHHHHHHHHHHHHHCCCC-HHHH--HHHHHHHHHHHSCS-SSHHHHHHHHHHHHHCC---
T ss_pred CCCCcchHHHHHHHH-cCCchHHHHHHHHHHHHHhCCC-cHHH--HHHHHHHHHhcCCC-CHhHHHHHHHHHHhcCC---
Confidence 444433444444444 4667899988887777766532 1111 13566677777765 78899888888877742
Q ss_pred cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh
Q 000098 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2256)
Q Consensus 1412 ~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~ 1491 (2256)
......++|.+..++.|+++.||.+|..++..+....+ +.++.+++.+.+.+.|.+..++.+|+.+|+.++...|+
T Consensus 137 ---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 137 ---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 24566788999999999999999999999999987554 44567888888889999999999999999999876554
Q ss_pred hHhhhhhhHHHHHHHhhcC---------------CCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhhhC---C---C
Q 000098 1492 QLSQCLPKIVPKLTEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLT---D---P 1549 (2256)
Q Consensus 1492 ~l~~~L~~Ivp~L~~~L~D---------------~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~l~---d---~ 1549 (2256)
. ...+..++|.++..|.+ +++..+....++|+.++.. +|.. +.+.+.|...+. . .
T Consensus 213 ~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 213 M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccch
Confidence 2 22344555655555442 4788888888888888753 3332 333333333321 1 1
Q ss_pred ChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh
Q 000098 1550 NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2256)
Q Consensus 1550 ~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L 1628 (2256)
+..+. +|+..+..... ........++.+.+.+.+.++++|..+...++.++.. .+.. +....+.++.++
T Consensus 290 ~~aV~~ea~~~i~~l~~----~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~----~~~~~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDIKS----ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNA----VQRHRSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHH----HGGGHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHH----HHHHHHHHHHHc
Confidence 12232 56666654211 1222334667778888888899999999999988863 2222 333456777888
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCC
Q 000098 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ 1708 (2256)
Q Consensus 1629 ~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~ 1708 (2256)
.|++..+|..+...+..++. +.....+++.+++.+.+ .+...|..++.+++.++..+... ...+++.+++.+.+.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDS-CEPEFKADCASGIFLAAEKYAPS-KRWHIDTIMRVLTTA 434 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHT
T ss_pred cCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhc
Confidence 99999999999998888764 34567888888888876 56678999999999998876533 455667777776666
Q ss_pred CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhhcc----------chhch
Q 000098 1709 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATT----------SLPLL 1776 (2256)
Q Consensus 1709 ~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d--~~~~VR~~Al~al~~iv~~~~~~----------~~~~l 1776 (2256)
...++..++..+..+....++. .. .+++.+...+.+ ..+.+...+++.++......... ....+
T Consensus 435 ~~~v~~~~~~~l~~ii~~~p~l-~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~ 510 (618)
T 1w63_A 435 GSYVRDDAVPNLIQLITNSVEM-HA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEV 510 (618)
T ss_dssp GGGSCSSHHHHHHHHHHHSCST-HH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHH
T ss_pred cchhHHHHHHHHHHHHhcChhH-HH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHH
Confidence 5566666666666666544432 22 233444444432 12233345677766665443220 11123
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 000098 1777 LPAVEDGIF--NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2256)
Q Consensus 1777 lp~L~~~l~--d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2256)
++.+...+. .++..+|..++.++..+..+.+ + . .+.+...|-....
T Consensus 511 ~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~------------~---~-----------------~~~l~~~L~~~~~ 558 (618)
T 1w63_A 511 LDILESVLISNMSTSVTRGYALTAIMKLSTRFT------------C---T-----------------VNRIKKVVSIYGS 558 (618)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS------------S---C-----------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc------------c---h-----------------HHHHHHHHHHhcC
Confidence 444444332 5678899999999888853210 0 0 0111111223357
Q ss_pred CCcHHHHHHHHHHHHHHHh
Q 000098 1855 DVSLSVRQAALHVWKTIVA 1873 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~ 1873 (2256)
|.+.+||+.|...|.-+..
T Consensus 559 ~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 559 SIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 8889999999998876544
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.43 E-value=2.5e-11 Score=160.16 Aligned_cols=378 Identities=14% Similarity=0.122 Sum_probs=269.9
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhh
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2256)
++.++..+...+..++..|..+++.+.+.-.. +.+ ..++|.|++.|. +++...+..|+.+|+.++.+.++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566777888899999999999887653222 122 247899999997 456889999999999999887765433
Q ss_pred hhh-hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhhhCCCChh------HHHHHHHHHhcc
Q 000098 1496 CLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQTT 1564 (2256)
Q Consensus 1496 ~L~-~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~Ll~~l~d~~~~------vr~al~~L~~~~ 1564 (2256)
... ..+|.|+.+|.++++.||..|+++|++++..-.. ..+ ...++.|+..+..++.. .+.+...+....
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 332 6899999999999999999999999999864221 112 35678888888876532 234444444311
Q ss_pred cc--cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhcCCCHHHHHHHHH
Q 000098 1565 FV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2256)
Q Consensus 1565 ~~--~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~d~~~~VR~~a~~ 1641 (2256)
.. ..........++|.+.+.+.+.+++++..++.++.+++.. ...... -.-..+++.|..++.++++.++..+++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 11 1122234567889999999999999999999999999862 211111 112457889999999999999999999
Q ss_pred HHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---H-HHHHHHHHHHhccCCCHHHH
Q 000098 1642 AIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASVR 1713 (2256)
Q Consensus 1642 aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~-l~~ll~~ll~~l~~~~~~vR 1713 (2256)
+++.++..-... .-...++.|...|.+ .+..+|..++.+++.+....... . -..++|.++..+.+.+..+|
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 999987422111 012345556666655 56678999999999987543222 1 14688999999999999999
Q ss_pred HHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----chh------chHHHHH
Q 000098 1714 DGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----SLP------LLLPAVE 1781 (2256)
Q Consensus 1714 ~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----~~~------~llp~L~ 1781 (2256)
..++.+++.++.....+...++ ..+++++++.|...++.++..++.++..|.+..... .+. ..+..+.
T Consensus 376 ~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie 455 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE 455 (510)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHH
Confidence 9999999999876555433444 357899999999999999999999998887643221 111 1345566
Q ss_pred hhcCCCCHHHHHHHHHHHHHH
Q 000098 1782 DGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1782 ~~l~d~~~~iR~~sv~llg~l 1802 (2256)
....++|..++..+..++...
T Consensus 456 ~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 456 ALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHH
Confidence 666788999999998888765
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.40 E-value=8e-11 Score=156.37 Aligned_cols=379 Identities=14% Similarity=0.124 Sum_probs=271.4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~ 1494 (2256)
.++.++..+..+++.++..|..+++.+...-.. +.+ ..++|.+++.+. +++...+..|+.+|+.++.+.+....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356667777788888888888888877643222 122 357899999997 56688999999999999988776533
Q ss_pred hhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhhhCCCChh------HHHHHHHHHhc
Q 000098 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQT 1563 (2256)
Q Consensus 1495 ~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~Ll~~l~d~~~~------vr~al~~L~~~ 1563 (2256)
... ...+|.|+.++.++++.||..|+++|+.++..-.. ..+ ...++.|+..+.+++.. .+.+...+...
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 222 36899999999999999999999999999864211 112 35678888888876532 23344444331
Q ss_pred cc--ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhcCCCHHHHHHHH
Q 000098 1564 TF--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2256)
Q Consensus 1564 ~~--~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~d~~~~VR~~a~ 1640 (2256)
.. ...........++|.+.+.+.+.+++++..++.++.+++.. ...... -.-..++|.|..++.++++.++..++
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 11 11122234567889999999999999999999999998862 211111 11246789999999999999999999
Q ss_pred HHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---H-HHHHHHHHHHhccCCCHHH
Q 000098 1641 RAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASV 1712 (2256)
Q Consensus 1641 ~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~-l~~ll~~ll~~l~~~~~~v 1712 (2256)
++++.++..-... .-...++.|...|.+ .+..+|..++.+++.++.+.... . -..++|.++..+.+.+..+
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 9999987421110 112356777777775 56678999999999987543222 1 1458899999999999999
Q ss_pred HHHHHHHHHHhHhhhChhHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----chh------chHHHH
Q 000098 1713 RDGYLTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATT----SLP------LLLPAV 1780 (2256)
Q Consensus 1713 R~~al~~l~~La~~~g~~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----~~~------~llp~L 1780 (2256)
|..++.+++.++.....+...++- .++++++..|...++.++..++.++..|.+..... .+. ..+..+
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 473 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 473 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHH
Confidence 999999999988765544334442 47899999999999999999999998887543211 111 134556
Q ss_pred HhhcCCCCHHHHHHHHHHHHHH
Q 000098 1781 EDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1781 ~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
.....++|..++..|..++...
T Consensus 474 e~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 474 EALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 6666788999999998888765
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.40 E-value=9.6e-11 Score=154.65 Aligned_cols=386 Identities=15% Similarity=0.126 Sum_probs=263.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---cccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g---~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~ 1415 (2256)
++.++..+ ++++...+..|.+++..++..-. .+.+....++|.|.+.+...+++..+..|.+++..|+.+..+.-.
T Consensus 59 i~~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44455555 34457777777777777664322 122223468899999988777889999999999999864332212
Q ss_pred HhHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCCh-----hHHHHHHHHHHHH
Q 000098 1416 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 1485 (2256)
Q Consensus 1416 pyv~-~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~R~~a~~~Lg~l 1485 (2256)
..+. ..+|.++..+.+++..||+.|.++++.++...+.. .+ ...++.++..+.+.+. ...+.++.++..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 2222 37899999999999999999999999998654331 12 3467888888875443 3455677788888
Q ss_pred HhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc
Q 000098 1486 AYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2256)
Q Consensus 1486 a~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2256)
+.... .........++|.|..++.+.+++|+..|+++|..++..- ++... .+.
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~--~~~~~---------------------~i~--- 271 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIE---------------------MVV--- 271 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHH---------------------HHH---
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch--hhhHH---------------------HHH---
Confidence 76542 2222344678999999999999999999999999987532 11100 000
Q ss_pred cccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
-..++|.+...+.+.++.++..++.++++++.. +...... .-...++.|..++.++++.+|..++.+|
T Consensus 272 ---------~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 272 ---------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp ---------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred ---------hcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 012456666777777788888888888888752 2111111 1134567777888899999999999999
Q ss_pred HHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH-----HHHHHHHHHhccCCCHHHHH
Q 000098 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2256)
Q Consensus 1644 ~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~ll~~ll~~l~~~~~~vR~ 1714 (2256)
+.++...... .-..++|.++..+.+ .+..+|..++.+++.++.....+.. ...++.++..+.++++.++.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9997532211 113578889888886 5677999999999998876554432 35788999999999999999
Q ss_pred HHHHHHHHhHhhh---Ch--hHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1715 GYLTLFKYLPRSL---GV--QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1715 ~al~~l~~La~~~---g~--~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
.++.++..+.... +. .+..+++ ..+..|-.+..+++++|++.|...+..
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999988776543 22 2222332 245666666778899998887666544
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=2.4e-12 Score=152.58 Aligned_cols=198 Identities=19% Similarity=0.277 Sum_probs=160.7
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCc---h
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN---P 1533 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~---~ 1533 (2256)
.+-+.+.+.+.+.+|+.|++|+..|..++.++++.....+.++++.+...+. |++..||..|+.+++.++..++. +
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3445678888999999999999999999998766545566889999999995 99999999999999999988875 5
Q ss_pred hHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000098 1534 EIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2256)
Q Consensus 1534 ~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~ 1612 (2256)
++..++|.++..+.|++..+|+ +..++... ... ..+..++|.+...+.+++|.+|..+..+++.+....+....
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~--~~~---~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAI--YAS---TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHH--HTT---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HHc---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 6789999999999999988885 33333221 111 13567899999999999999999999999997653221124
Q ss_pred chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHH
Q 000098 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip 1660 (2256)
..+|++.++|.+..++.|++++||..|..+++.++..+|++.+..+++
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 578999999999999999999999999999999999999754444333
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=2.3e-10 Score=153.53 Aligned_cols=478 Identities=12% Similarity=0.101 Sum_probs=299.9
Q ss_pred hHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000098 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1452 ~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~ 1531 (2256)
-++.+...++.+++.+.+++...|+.+...+..++...++.+ --++..+.+-++|+++.+|..|..+|+.+.
T Consensus 68 ~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---- 139 (621)
T 2vgl_A 68 LGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVG---- 139 (621)
T ss_dssp HSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----
T ss_pred cCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccC----
Confidence 345566678888899999999999999998888887776543 245667777889999999999999999885
Q ss_pred chh-HHhHHHHHHhhh--CCCChhHHH-HHHHHHhc-ccccCCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000098 1532 NPE-IASLVPTLLMGL--TDPNDHTKY-SLDILLQT-TFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2256)
Q Consensus 1532 ~~~-i~~lv~~Ll~~l--~d~~~~vr~-al~~L~~~-~~~~~~~~~~l--~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~ 1604 (2256)
.++ .+.++|.+.+++ .|+++++|. |+-++... ... .... ..+++.+.+.+.|+++.++..|..++..++
T Consensus 140 ~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~----p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 140 SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS----PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC----GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC----hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 344 488999999999 999999984 44443331 111 1111 256788899999999999999999998888
Q ss_pred hhcCCCCcchhhhhhhhHHHHHhhcCC-------------CHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhc
Q 000098 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1605 ~~l~~~~~l~~~l~~Ll~~L~~~L~d~-------------~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~ 1668 (2256)
.. ++..+.++.+.++..+.+++.++ ++-.|-...+.++.++..-.++ .+.++++.+++.+.+
T Consensus 216 ~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~ 293 (621)
T 2vgl_A 216 QK--NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQE 293 (621)
T ss_dssp HH--CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred Hh--ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 63 44445566666777776665432 5677777777776654311111 123344444444322
Q ss_pred CC---C-------HHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHH
Q 000098 1669 DN---S-------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2256)
Q Consensus 1669 ~~---~-------~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~i 1738 (2256)
.. . ..+...++.++..+. -..+........+...+.++++.+|-.++..+..++...+. .+++...
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~ 369 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTH 369 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTT
T ss_pred CcccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHH
Confidence 11 0 012222222222211 12234566777788888889999999999999998876542 1244555
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000098 1739 LPAILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2256)
Q Consensus 1739 lp~Ll~~L~-d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~ 1817 (2256)
.+.++..+. |++..||..+++.+..++. ...+..++.++.+.+.+.+...|..++..+|.+..+.+..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~-------- 438 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD-------- 438 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--------
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--------
Confidence 667777888 9999999988888766642 3356678888888887778889999999998876432110
Q ss_pred CCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC
Q 000098 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2256)
Q Consensus 1818 ~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~ 1897 (2256)
.+.....+.+.+ ....+ .+...+...+..++.+.|..-...+..++ +.+.++
T Consensus 439 --------~~~~v~~Ll~ll-------------~~~~~---~v~~ev~~~l~~ii~~~~~~~~~~~~~l~----~~l~~~ 490 (621)
T 2vgl_A 439 --------YTWYVDTILNLI-------------RIAGD---YVSEEVWYRVIQIVINRDDVQGYAAKTVF----EALQAP 490 (621)
T ss_dssp --------THHHHHHHHHHH-------------HHHGG---GSCSHHHHHHHHHHGGGCSCHHHHHHHHH----HHHTSS
T ss_pred --------HHHHHHHHHHHH-------------Hhhcc---cchHHHHHHHHHHHhCChhHHHHHHHHHH----HHHcCc
Confidence 111111122111 11111 12233333444444444332222333333 334444
Q ss_pred C--HHHHHHHHHHHHHHHHhhCcc--ch-hchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHH
Q 000098 1898 S--SERRQVAGRALGELVRKLGER--VL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2256)
Q Consensus 1898 ~--~~~R~~A~~aL~~lv~~~~~~--~l-~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~ 1972 (2256)
. ..+-..+++.+|+.+..+... .. .+++..+.+.+.+.++.+|..+..++..+....+ + . .+.+...+..
T Consensus 491 ~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~ 565 (621)
T 2vgl_A 491 ACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRS 565 (621)
T ss_dssp SCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSS
T ss_pred cchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHH
Confidence 2 345567779999887755432 11 2556666666777788999998888877755432 1 1 1223333434
Q ss_pred Hhc--CCCHHHHHHHHHHHHH
Q 000098 1973 ALC--DSILEVRESAGLAFST 1991 (2256)
Q Consensus 1973 ~L~--D~~~~VR~~A~~al~~ 1991 (2256)
+.. |.+.+||+.|..-+.-
T Consensus 566 ~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 566 DSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HHHHSCSSHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHH
Confidence 455 8999999998764443
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.37 E-value=2.8e-10 Score=151.08 Aligned_cols=386 Identities=15% Similarity=0.121 Sum_probs=262.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~---~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~ 1415 (2256)
++.++..+. +++...+..|...+..++..-.. +.+....++|.+.+.+....++..+..|.+++..++.+....-.
T Consensus 78 l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344444443 34466677777777666543211 12223468889988987776899999999999999865432112
Q ss_pred HhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCCh-----hHHHHHHHHHHHH
Q 000098 1416 PYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 1485 (2256)
Q Consensus 1416 pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~R~~a~~~Lg~l 1485 (2256)
..+ ...+|.++..+.+++..||+.|.++++.++..-+.. .+ ...++.++..+.+.+. .....++.++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 222 247899999999999999999999999998643321 12 3468888888875443 3455677788888
Q ss_pred HhhChh-hHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc
Q 000098 1486 AYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2256)
Q Consensus 1486 a~~~p~-~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2256)
+..... ........++|.|..++.+++++|+..|+++|..++..-. .... .+.
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~~---------------------~v~--- 290 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERIE---------------------MVV--- 290 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHHH---------------------HHH---
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhHH---------------------HHH---
Confidence 765422 2223446789999999999999999999999999875321 1100 000
Q ss_pred cccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
...++|.+...+.+.++.++..++.++++++.. +..... -.-...++.|..++.++++.+|..|+.+|
T Consensus 291 ---------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 291 ---------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp ---------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred ---------hccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 012456666777777888888888888888752 211111 11235678888899999999999999999
Q ss_pred HHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH-----HHHHHHHHHhccCCCHHHHH
Q 000098 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2256)
Q Consensus 1644 ~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~ll~~ll~~l~~~~~~vR~ 1714 (2256)
+.++...... .-..++|.++..+.+ .+..+|..++.+|+.++.....+.. .+.++.++..+.++++.++.
T Consensus 360 ~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHhcccHHHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9998532111 112478889888886 5667899999999998876554422 35788999999999999999
Q ss_pred HHHHHHHHhHhhh---Ch--hHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1715 GYLTLFKYLPRSL---GV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1715 ~al~~l~~La~~~---g~--~f~~yl~~--ilp~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
.++.++..+.... +. .+..++++ .+..|-.+..+++++|++.|...+..
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999988876543 22 12222221 34556666678899999887666554
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.30 E-value=3e-11 Score=142.57 Aligned_cols=199 Identities=10% Similarity=0.201 Sum_probs=162.3
Q ss_pred HHHHhccCCChhHHHHHHHHHHH-HHhhChhhH--hhhhhhHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhcC-c----
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK-N---- 1532 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~-la~~~p~~l--~~~L~~Ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~i~-~---- 1532 (2256)
.+.+.+.+.+|+.|++|++.|+. +++++++.. ...+..++..+.+.+ +|++..||..|+.+++.+++.++ +
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45567789999999999999999 988777655 455678899999999 89999999999999999999887 2
Q ss_pred hhHHhHHHHHHhhhCCCChhHHH----HHHHHHhcccccCCCh-hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1533 PEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDA-PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1533 ~~i~~lv~~Ll~~l~d~~~~vr~----al~~L~~~~~~~~~~~-~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
++...++|.++..+.|....+++ ++..+... ...... +++..+++.+...+.+.+|.+|..+..+++.++...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 56688999999999999877764 44444431 111111 236679999999999999999999999999998753
Q ss_pred CCC-Ccchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHH
Q 000098 1608 TEP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2256)
Q Consensus 1608 ~~~-~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~L 1662 (2256)
... ..+.+|+ +.++|.+..++.|+++.||..|..+++.++..+|++.+..+++.|
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 221 4577899 999999999999999999999999999999999987666666654
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.30 E-value=3.6e-09 Score=141.93 Aligned_cols=491 Identities=15% Similarity=0.123 Sum_probs=301.4
Q ss_pred cCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1332 ~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
|.+........+. +..+++...|+-+..++..+++.-.+... -+++.+.+-+.+. |+..|-.|+.+++.+..
T Consensus 69 G~d~s~~~~~vvk-l~~s~~~~~Krl~YL~l~~~~~~~~e~~~---L~iN~l~kDl~~~-n~~ir~lALr~L~~i~~--- 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVN-LLSSNRYTEKQIGYLFISVLVNSNSELIR---LINNAIKNDLASR-NPTFMGLALHCIANVGS--- 140 (621)
T ss_dssp SCCCCSCHHHHHH-GGGCSCHHHHHHHHHHHHHSCCCCHHHHH---HHHHHHHHHHHSC-CHHHHHHHHHHHHHHCC---
T ss_pred CCCCchhHHHHHH-HhcCCCHHHHHHHHHHHHHHccCCcHHHH---HHHHHHHHhcCCC-CHHHHHHHHHHhhccCC---
Confidence 4444444445555 55677899999888888777754321111 3566677777766 89999888887777632
Q ss_pred cCchHhHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHhhhhHhhHH--hHHHHHHHhccCCChhHHHHHHHHHHHHHh
Q 000098 1412 RLFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAMMSQLSAQGVK--LVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2256)
Q Consensus 1412 ~~~~pyv~~llp~ll~~l--~D~~~~VR~aa~~al~~l~~~l~~~~v~--~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~ 1487 (2256)
..+...++|.+..++ .|.++.||++|+-|+..+.... ++.++ .+++.+.+.+.|.+..++.+|+.++..++.
T Consensus 141 ---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 141 ---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp ---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 346778889999999 9999999999999999998854 34455 788999999999999999999999999999
Q ss_pred hChhhHhhhhhhHHHHHHHhhcCC-------------CHHHHHHHHHHHHHHHhhcCchhH-HhH---HHHHHhhhCCCC
Q 000098 1488 CAPQQLSQCLPKIVPKLTEVLTDT-------------HPKVQSAGQTALQQVGSVIKNPEI-ASL---VPTLLMGLTDPN 1550 (2256)
Q Consensus 1488 ~~p~~l~~~L~~Ivp~L~~~L~D~-------------~~~VR~aA~~aL~~l~~~i~~~~i-~~l---v~~Ll~~l~d~~ 1550 (2256)
..|+.+...++.++..+.+++.+. +|..+....+.+..++.. .++.. +.+ ++.++..+.+..
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCc
Confidence 888776666677776666655332 344554444444333211 01111 111 111111110000
Q ss_pred hhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCH--HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh
Q 000098 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSA--ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2256)
Q Consensus 1551 ~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~--~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L 1628 (2256)
. .. .+++.+. .+...++.++..+. . ..++....+..+..++
T Consensus 296 k-------------------s~-----------~l~~~n~~~aVl~ea~~~i~~l~----~---~~~~~~~~~~~L~~~L 338 (621)
T 2vgl_A 296 K-------------------SK-----------KVQHSNAKNAVLFEAISLIIHHD----S---EPNLLVRACNQLGQFL 338 (621)
T ss_dssp S-------------------CS-----------SHHHHHHHHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHS
T ss_pred c-------------------cc-----------cccccchHHHHHHHHHHHHHhcC----C---cHHHHHHHHHHHHHHh
Confidence 0 00 0011111 34444444443332 1 2345556777788888
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhC-cCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC
Q 000098 1629 VDPIPEVRSVAARAIGSLIRGMG-EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH 1707 (2256)
Q Consensus 1629 ~d~~~~VR~~a~~aL~~L~~~~g-~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~ 1707 (2256)
.++++.+|..+..++..++...+ .+.+....+.++..|..+++..+|..+...+..++ ..+..+.++..+...+.+
T Consensus 339 ~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 339 QHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLET 415 (621)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHh
Confidence 88999999999999999986543 12345556667777773456668887777665554 345678888888888888
Q ss_pred CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCC
Q 000098 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND 1787 (2256)
Q Consensus 1708 ~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~ 1787 (2256)
.+...|..++..++.++..+.+.+..|++.++..+-..- ..+...+...+..++.... +.-...+..+.+.+.++
T Consensus 416 ~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~----~~v~~ev~~~l~~ii~~~~-~~~~~~~~~l~~~l~~~ 490 (621)
T 2vgl_A 416 ADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAG----DYVSEEVWYRVIQIVINRD-DVQGYAAKTVFEALQAP 490 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHG----GGSCSHHHHHHHHHHGGGC-SCHHHHHHHHHHHHTSS
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHcCc
Confidence 899999999999999999888888788776666554322 1233333344444443321 11122334444444443
Q ss_pred C--HHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHH
Q 000098 1788 N--WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865 (2256)
Q Consensus 1788 ~--~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~ 1865 (2256)
. ..+-..++-.+|+....+.+. +...+ .+++..++....+.+..||..++
T Consensus 491 ~~~~~li~~~~wilGEy~~~~~~~------------~~~~p----------------~~~l~~l~~~~~~~~~~v~~~~L 542 (621)
T 2vgl_A 491 ACHENLVKVGGYILGEFGNLIAGD------------PRSSP----------------LIQFNLLHSKFHLCSVPTRALLL 542 (621)
T ss_dssp SCCHHHHHHHHHHHHHHTHHHHSS------------TTSCH----------------HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cchHHHHHHHHHHhcchHHHhccc------------CCCCH----------------HHHHHHHHHHhccCCHHHHHHHH
Confidence 3 233344446666653221110 00000 12344444455677788999998
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000098 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGEL 1912 (2256)
Q Consensus 1866 ~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~--~~~~~~R~~A~~aL~~l 1912 (2256)
.++..++...|. ..+.+..++. .+.. +.+.++|+.|...+.-+
T Consensus 543 ta~~Kl~~~~p~-~~~~i~~~l~---~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 543 STYIKFVNLFPE-VKATIQDVLR---SDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHCGG-GHHHHHHHHS---SHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChH-HHHHHHHHHH---HHhcCCCCCHHHHHHHHHHHHHH
Confidence 888777776654 2333333332 2234 78899999888766544
No 56
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.25 E-value=7.1e-07 Score=124.47 Aligned_cols=312 Identities=13% Similarity=0.133 Sum_probs=198.2
Q ss_pred CCcHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhhC--ccchhchHH
Q 000098 1855 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASS-----SSERRQVAGRALGELVRKLG--ERVLPSIIP 1926 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~~-~l~~~l~~Ll~~L~~~L~~~-----~~~~R~~A~~aL~~lv~~~~--~~~l~~llp 1926 (2256)
..+|..+++++-++++++....+ .-++++|.+++.++.....+ ...++......+|+..+.+. ..+++.++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 34688889988889988766553 45689999999888765443 12345555578887777653 447888888
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhh-------HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh
Q 000098 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2256)
Q Consensus 1927 ~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l-------~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~ 1999 (2256)
.+.+++.++++.++..+|.++..+...|+.... .||+.+++..+.....+-.++-...-.+|++.++...+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 888999998999999999999999998876532 4688888888888877777777777778888888776643
Q ss_pred h-----HHhHHHHHHHhhccCCchHHHHHHHHHHHhh--hcccch--hhhhhhhhcCchhhhHHHHHHHHHHHhCCCccc
Q 000098 2000 A-----IDEIVPTLLHALEDDQTSDTALDGLKQILSV--RTTAVL--PHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070 (2256)
Q Consensus 2000 ~-----~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~--~~~~~l--p~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~ 2070 (2256)
. ++.++|.+.+. +.+++.. ....++ |..+..+ ....++..+++...|..|.+
T Consensus 650 ~~~~~~i~~Lm~~~~~~-------------w~~l~~~~~~~~~~~~d~~~i~~l------~~il~~n~~v~~~~g~~f~~ 710 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLPNQV-------------WDSIIQQATKNVDILKDPETVKQL------GSILKTNVRACKAVGHPFVI 710 (1073)
T ss_dssp HHHHHHHHHHTHHHHHH-------------HHHHHHHHHHCGGGGGCHHHHHHH------HHHHHHHHHHHHHHCGGGHH
T ss_pred chHHHHHHHHHHHHHHH-------------HHHHHHHhhcCchhccChHHHHHH------HHHHhhhHHHHhhcchhHHH
Confidence 2 23333332222 2222210 000000 0000111 02345666777888999999
Q ss_pred cHhhHHHHHHHhhCC-----------------CCHH------HHHHHHHHHHHHHhhcch------hcHHHHHHHHHhhc
Q 000098 2071 HLGTILPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVIDE------EGVESLVSELLKGV 2121 (2256)
Q Consensus 2071 ~l~~Ilp~Ll~~l~~-----------------~~~~------vr~~a~~al~~l~~~~~~------~~~~~ll~~Ll~~l 2121 (2256)
++..|+|.+++..+- +.+. +|...++.+.+.+...++ .-+++++..++.-.
T Consensus 711 ~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY 790 (1073)
T 3gjx_A 711 QLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDY 790 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHH
Confidence 999999987764321 1121 233444444544443211 22344555555544
Q ss_pred CCCChhhHHH-HHHHHHHHHHhchhhhhhhHHHHHHHHHH----HcC---CCChHHHHHHHHHHHHhhccCC
Q 000098 2122 GDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLS---DSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2122 ~~~~~~vR~~-A~~~l~~l~~~~~~~~~~y~~~il~~L~~----~l~---D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
....|..|.. .++++..++.+.+..+.++++.++..++. +++ +..++.|.+=..=+.++..+..
T Consensus 791 ~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f 862 (1073)
T 3gjx_A 791 QRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCF 862 (1073)
T ss_dssp HHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred hcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHh
Confidence 4444555544 55777788888888888998888887754 454 3457888877666666655433
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.20 E-value=2.8e-06 Score=114.03 Aligned_cols=331 Identities=15% Similarity=0.137 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc---CCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc
Q 000098 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1592 vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~---d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~ 1668 (2256)
.+..|...+|.+.. ++..+ .+..|...+. ..++.+|..|+.++|.+....+. +.+..|.+.|.+
T Consensus 374 ~k~sA~aSLGlIh~--g~~~~-------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~~~~lL~~~L~~ 440 (963)
T 4ady_A 374 AKFTATASLGVIHK--GNLLE-------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----DTTDYLKNIIVE 440 (963)
T ss_dssp HHHHHHHHHHHHTS--SCTTT-------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc--CchHH-------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHcC
Confidence 45566666666654 33222 2333333443 56789999999999998876653 456667777765
Q ss_pred CC-------CHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHH
Q 000098 1669 DN-------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2256)
Q Consensus 1669 ~~-------~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~ 1741 (2256)
+. ...+|.+++.+||.+..+.+.+ .+++.+...+.+.+..+|..+..++|.+-...|.. ..+..++..
T Consensus 441 ~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e---ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~ai~~LL~~ 515 (963)
T 4ady_A 441 NSGTSGDEDVDVLLHGASLGIGLAAMGSANI---EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTY 515 (963)
T ss_dssp HSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--HHHHHHHHH
Confidence 44 3568999999999876665544 34444555555666778888888888654433432 234444444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhhc-cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCC
Q 000098 1742 ILDGLADENESVRDAALGAGHVLVEHYAT-TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2256)
Q Consensus 1742 Ll~~L~d~~~~VR~~Al~al~~iv~~~~~-~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~e 1820 (2256)
+. .+.++.+|..+.-++..+ .++. +.++.++..|. .+.+|-+|..++-.+|--. .|..
T Consensus 516 ~~---e~~~e~vrR~aalgLGll--~~g~~e~~~~li~~L~---~~~dp~vRygaa~alglAy---aGTG---------- 574 (963)
T 4ady_A 516 SQ---ETQHGNITRGLAVGLALI--NYGRQELADDLITKML---ASDESLLRYGGAFTIALAY---AGTG---------- 574 (963)
T ss_dssp HH---HCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHT---TTSC----------
T ss_pred Hh---ccCcHHHHHHHHHHHHhh--hCCChHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHh---cCCC----------
Confidence 43 355778998888877765 2332 23333333333 3678999999887776431 1110
Q ss_pred CCCcchHHHHHHHHHHhcchhhHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCH
Q 000098 1821 DEGASTEAHGRAIIEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899 (2256)
Q Consensus 1821 d~~~~~e~~~~~l~~~Lg~e~~~~vl~-~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~ 1899 (2256)
.. ..+. -|..+..|.+..||+.|+..++-+....+. .++.++..+ ..+.++
T Consensus 575 -----n~----------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e----~v~rlv~~L---~~~~d~ 626 (963)
T 4ady_A 575 -----NN----------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT----TVPRIVQLL---SKSHNA 626 (963)
T ss_dssp -----CH----------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS----SHHHHTTTG---GGCSCH
T ss_pred -----CH----------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH----HHHHHHHHH---HhcCCH
Confidence 00 1122 122345677888999999998876555443 344444433 357899
Q ss_pred HHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcC--C
Q 000098 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--S 1977 (2256)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D--~ 1977 (2256)
.+|..++.+||.++... ..+.++..|....+|++..+|++++.+++.+...... ...|.+..+...+.....| .
T Consensus 627 ~VR~gAalALGli~aGn---~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn-a~~~rva~~l~~L~~~~~dk~~ 702 (963)
T 4ady_A 627 HVRCGTAFALGIACAGK---GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE-KLNPQVADINKNFLSVITNKHQ 702 (963)
T ss_dssp HHHHHHHHHHHHHTSSS---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT-TTCTTHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHhccCC---CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc-ccchHHHHHHHHHHHHHhcccc
Confidence 99999999999887322 2467788888888999999999999999987654332 2334556666666666765 5
Q ss_pred CHHHHHHHHHHHHHHH
Q 000098 1978 ILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1978 ~~~VR~~A~~al~~l~ 1993 (2256)
++.+|-.|.-|.|.+.
T Consensus 703 d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 703 EGLAKFGACVAQGIMN 718 (963)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHh
Confidence 6788988888888776
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.20 E-value=9.2e-10 Score=133.42 Aligned_cols=247 Identities=17% Similarity=0.117 Sum_probs=151.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhH
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~i 1459 (2256)
++.+.+.+.++ ++.+|..|..+++.+.. ...++.+...+.|+++.||..+..+++.+.. ....+..+
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~l 91 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDNV 91 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchHH
Confidence 44555566554 77788777777665531 2456677777788888888888877766532 11224445
Q ss_pred HHHHHH-hccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1460 lp~Ll~-~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
++.+.+ .+.+.++.+|..++.+|+.+....+. ..+.+++.+...++|+++.||..|+.+|+.++. ...
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~ 160 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KAT 160 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHH
Confidence 555553 35677888888888888877654432 224567777777888888888888888876653 135
Q ss_pred HHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1539 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+|.|...+.|++..+|. ++..+..... .-+..+|.+...+.|.++.+|..++.+++.+..
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------ 221 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------ 221 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhcc-------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------
Confidence 66667777777776663 4555543210 012355666677777777777777777666541
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHH
Q 000098 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 1678 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~a 1678 (2256)
+..++.+...+.|++ +|..++.+++.+.. +..+|.|.+.+.++.+...+..+
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 124555666666643 67777777766532 35666676666654444344333
No 59
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.19 E-value=3.6e-08 Score=142.32 Aligned_cols=537 Identities=12% Similarity=0.107 Sum_probs=303.3
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhhcCC
Q 000098 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGY 1126 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~~~~ 1126 (2256)
.++.+++..+++| ++++|++|++.|++.... |........+. ...+.+..+|.+|.. .|..++.
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3577888899998 778899999999876422 21222223322 234556777776543 5665555
Q ss_pred CCCCCh-HhHHHhhcC-------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHH
Q 000098 1127 DFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2256)
Q Consensus 1127 ~~~~~~-~~ll~~l~~-------~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2256)
+.+..+ ..+++++.+ ....+|.+.+++++.++. .||+.|++++..|.+... .+...+.++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~-----------~~~~~~e~~ 153 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSK-----------QGETQTELV 153 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHH-----------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhc-----------CCHHHHHHH
Confidence 544555 677777642 468999999999999985 588889988888887642 122457788
Q ss_pred HHHHHHhhhh-hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhcc----------
Q 000098 1198 ALALHSAADV-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK---------- 1266 (2256)
Q Consensus 1198 ~~aL~~l~~~-~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~---------- 1266 (2256)
..+|..+.+- +..+ +... .|..-+. ..+. +.+..+++.+..++...
T Consensus 154 L~iL~~L~Eev~~~~---------------~~~~-~r~~~l~---~~l~----~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQ---------------TLPP-QRRRDIQ---QTLT----QNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp HHHHHHHHHHHHTSC---------------CSCH-HHHHHHH---HHHH----HTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccc---------------chHH-HHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888887652 2111 1111 1111110 0111 11223333333333210
Q ss_pred CCC---hhhhhhhhhHHHHHHHHHHhhhccCC--cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC--c-----
Q 000098 1267 ASD---EEKYDLVREGVVIFTGALAKHLAKDD--PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E----- 1334 (2256)
Q Consensus 1267 ~~~---~~~~~~vr~~av~~L~~La~~l~~~~--~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~----- 1334 (2256)
..+ .+.+..++..++.++.......+... ..-..+++.++..+.+ +.++.++.+||..++..... +
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 000 11222455566666554433322100 0001255666655554 45788899999988864421 1
Q ss_pred --h-HHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHhhh-----------CcccchhhcHHHHHHHHHhCCCCH
Q 000098 1335 --A-PTLVSRLLDQLM-------KSDKYGERRGAAFGLAGVVKGF-----------GISSLKKYGIAATLREGLADRNSA 1393 (2256)
Q Consensus 1335 --~-~~~l~~Ll~~L~-------~~~~~~vR~~Aa~~L~~lv~~~-----------g~~~~~~~~il~~L~~~l~~~~~~ 1393 (2256)
+ ...+..++..+. .++++..++.-+..+..+...+ ....+ ..+++.+.+...+. +.
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l~~lL~~t~~~-~~ 365 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYLESFLAFTTHP-SQ 365 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHHHHHHHHHTSS-CH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHHHHHHHHHhCc-cH
Confidence 1 122334555542 1123555655555555443211 01111 26788888887765 55
Q ss_pred HHHHHHHHHHHHHHHHh----ccCchHhHHHHHHHH---HHHcCCC-----------------c-------HHHHHHHHH
Q 000098 1394 KRREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQ-----------------V-------VAVREAAEC 1442 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~l----~~~~~pyv~~llp~l---l~~l~D~-----------------~-------~~VR~aa~~ 1442 (2256)
.+-..++..|..+.+.. ...+.+++..+++.+ +..+.-+ + ...|....+
T Consensus 366 ~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d 445 (1204)
T 3a6p_A 366 FLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGE 445 (1204)
T ss_dssp HHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHH
Confidence 55656666666555432 123567888888887 3322110 1 134666667
Q ss_pred HHHHHHhhhhHhhHHhHHHHHHHhcc-------------------------CCChhHHHHHHHHHHHHHhhChhhH-hhh
Q 000098 1443 AARAMMSQLSAQGVKLVLPSLLKGLE-------------------------DKAWRTKQSSVQLLGAMAYCAPQQL-SQC 1496 (2256)
Q Consensus 1443 al~~l~~~l~~~~v~~ilp~Ll~~L~-------------------------~~~w~~R~~a~~~Lg~la~~~p~~l-~~~ 1496 (2256)
.++.++...+...+..+.+.+.+.+. +..|....+....++++++.+.... ...
T Consensus 446 ~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~ 525 (1204)
T 3a6p_A 446 VMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREE 525 (1204)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77777766666555555555533322 2346666666677777776653221 123
Q ss_pred hh-hHHHHHHHhh---cCCCHHHHHHHHHHHHHHHhhcCc-h-hHHhHHHHHHhhhCCCCh-hHHHHHHHHHhcccccCC
Q 000098 1497 LP-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTFVNTV 1569 (2256)
Q Consensus 1497 L~-~Ivp~L~~~L---~D~~~~VR~aA~~aL~~l~~~i~~-~-~i~~lv~~Ll~~l~d~~~-~vr~al~~L~~~~~~~~~ 1569 (2256)
++ .++|.+++.+ +..+|.+|.....+++.++..+.. | .+..++..++..+.++.. ..+
T Consensus 526 l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~--------------- 590 (1204)
T 3a6p_A 526 IPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK--------------- 590 (1204)
T ss_dssp CCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT---------------
T ss_pred ccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc---------------
Confidence 33 2445555543 456899999999999999887652 2 345555555554433110 000
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCC---HHHHHHHHHHHHHH
Q 000098 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARAIGSL 1646 (2256)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~---~~VR~~a~~aL~~L 1646 (2256)
... .+.+.++|..|+..+..++.. .+..+.||++.+...+..++.... ..-+..-..+++.+
T Consensus 591 ~~~-------------~~~~k~vr~~a~~al~~L~~~--~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~i 655 (1204)
T 3a6p_A 591 APR-------------TRAVRNVRRHACSSIIKMCRD--YPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLI 655 (1204)
T ss_dssp SCC-------------CHHHHHHHHHHHHHHHHHHHH--CHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH
T ss_pred ccc-------------cHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHH
Confidence 000 001247889999999999984 345688999999998888876443 56666777888888
Q ss_pred HHhhCcC-----chHHHHHHHHHHhhc
Q 000098 1647 IRGMGEE-----NFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1647 ~~~~g~~-----~~~~lip~Ll~~L~~ 1668 (2256)
+..+++. ++..+++.+++.+.+
T Consensus 656 a~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 656 SNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 6655543 455666666666654
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.17 E-value=1.1e-05 Score=108.50 Aligned_cols=261 Identities=15% Similarity=0.165 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCc-cchhchHHHHhhhcCCCC
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKDPS 1936 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~-~~l~~llp~L~~~l~d~~ 1936 (2256)
..+|..|+-.++-...++.. .+.++.|.+. +.+.+...|..|+.+||.+.-..|. .....++..+.+ +.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~--eev~e~L~~~----L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~~ 521 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN--IEVYEALKEV----LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQH 521 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC--HHHHHHHHHH----HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CSC
T ss_pred HHHHHHHHHHHHHHhcCCCC--HHHHHHHHHH----HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc---cCc
Confidence 45787777788766554432 1333334333 3566677888999999987543332 345555555443 446
Q ss_pred hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccC
Q 000098 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2256)
Q Consensus 1937 ~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~-L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2256)
..+|.+++.+|+-+. .|.. ..++.+... ..+.++.+|..|+.+++.-+-..|.. ..+..|++.+.++
T Consensus 522 e~vrR~aalgLGll~--~g~~-------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d 589 (963)
T 4ady_A 522 GNITRGLAVGLALIN--YGRQ-------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHHHHHHT--TTCG-------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhh--CCCh-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccC
Confidence 678888988888552 3321 122333333 34789999999998888665444432 2334444443332
Q ss_pred CchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHh-CCCccccHhhHHHHHHHhh-CCCCHHHHHH
Q 000098 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHLGTILPALLSAM-GDDDMDVQSL 2093 (2256)
Q Consensus 2016 ~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~-g~~l~~~l~~Ilp~Ll~~l-~~~~~~vr~~ 2093 (2256)
... .....|+-+|+.+. |.. ...|.++..+ .+.++.+|..
T Consensus 590 ~~d--------------------------------~VRraAViaLGlI~~g~~------e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 590 SND--------------------------------DVRRAAVIALGFVLLRDY------TTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp SCH--------------------------------HHHHHHHHHHHHHTSSSC------SSHHHHTTTGGGCSCHHHHHH
T ss_pred CcH--------------------------------HHHHHHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHHHH
Confidence 211 01223344444432 431 2345555544 5678999999
Q ss_pred HHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCC--CChHHHH
Q 000098 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVA 2171 (2256)
Q Consensus 2094 a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D--~d~~Vr~ 2171 (2256)
+.-|++.+.... +....+..|.....|.+..+|++|+.++|.+...+.....|.+..+++.|.....| .|..++-
T Consensus 632 AalALGli~aGn---~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 632 TAFALGIACAGK---GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHhccCC---CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999887533 23566777777788999999999999999998877777778889999999998876 5677888
Q ss_pred HHHHHHHHh
Q 000098 2172 AAWEALSRV 2180 (2256)
Q Consensus 2172 ~A~~aL~~l 2180 (2256)
.|.-|.|-+
T Consensus 709 ga~iAqGll 717 (963)
T 4ady_A 709 GACVAQGIM 717 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 61
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.13 E-value=4.2e-09 Score=127.56 Aligned_cols=211 Identities=18% Similarity=0.141 Sum_probs=150.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHH
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~ 1381 (2256)
++.++..|.++++.+|..++.+|..+- .+..++.++..+ .++++.+|..|+.+|+.+... .... ..+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~------~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~--~~~~--~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG------GQDAVRLAIEFC-SDKNYIRRDIGAFILGQIKIC--KKCE--DNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCC--TTTH--HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC------CchHHHHHHHHH-cCCCHHHHHHHHHHHHHhccc--cccc--hHHHH
Confidence 467788889999999998888877652 244566666554 566789999999998765321 1111 14556
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp 1461 (2256)
.+.+.+.++.++.+|..++.+++.+....+ .+...++|.+...+.|+++.||..+..+++.+.. ...+|
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~~~ 162 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KATIP 162 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHHHH
Confidence 665443344489999999999888876542 2345678888888999999999998888876532 34678
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHH
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~ 1541 (2256)
.+.+.+.++++.+|..++.+|+.+... -+.+++.+...++|+++.||..|+++|+.++. ...+|.
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-------~~~~~~ 227 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------KRVLSV 227 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------GGGHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------HhhHHH
Confidence 888888889999999999999876321 13567788888899999999999999888762 134455
Q ss_pred HHhhhCCC
Q 000098 1542 LLMGLTDP 1549 (2256)
Q Consensus 1542 Ll~~l~d~ 1549 (2256)
|...+.|+
T Consensus 228 L~~~l~d~ 235 (280)
T 1oyz_A 228 LCDELKKN 235 (280)
T ss_dssp HHHHHTSS
T ss_pred HHHHhcCc
Confidence 55555554
No 62
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.04 E-value=8.4e-10 Score=133.25 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py 1417 (2256)
....|+..|++. .|.+|+||+.||.++++..|...... ...++ ..++..+..++ -+.|..|
T Consensus 175 fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~----------~~~N~-----DLAvRLLCVLA---LDRFGDY 235 (800)
T 3oc3_A 175 FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQ----------IRVDS-----KLFSKIYEILV---TDKFNDF 235 (800)
T ss_dssp TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CC----------CCCCT-----THHHHHHHHHH---HBCCBBC
T ss_pred HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCcee----------ccccH-----HHHHHHHHHHH---hcccccc
Confidence 566777777765 59999999999999999887533321 01111 22222222221 1234444
Q ss_pred HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1418 VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1418 v~~llp~ll~~l~D-~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
+ +| ....||++|+++++.+ .+++++ ..++-.++..+....|.+|++++..|..+ .++-..
T Consensus 236 V-----------SDqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~ 296 (800)
T 3oc3_A 236 V-----------DDRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED 296 (800)
T ss_dssp S-----------SSSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC
T ss_pred c-----------cCeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH
Confidence 3 34 3679999999999999 888876 35566666677889999999999999987 222223
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCCh---hHHHHHHHHHh-cccccCCChh
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND---HTKYSLDILLQ-TTFVNTVDAP 1572 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~---~vr~al~~L~~-~~~~~~~~~~ 1572 (2256)
++.+++.++.+|.|.+.+||..|+.+|..++ ....+..++..+|.++.+-++ .+...++.|.. .++... ..
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~ 371 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LS 371 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cc
Confidence 8999999999999999999999999999988 345688899999988876533 33333444433 111111 11
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHH-HHHhhcCCCHHHHHHHHHHHH
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE-VKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~-L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
..+.++|.+...+++.-+.||.++..++..+. ...+++. +.+++.+++.+++..+.+++.
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11277888888999999999988776654443 1234443 345567888999988888775
No 63
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.03 E-value=7.8e-09 Score=140.48 Aligned_cols=296 Identities=16% Similarity=0.270 Sum_probs=221.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh--hHHHHHHH
Q 000098 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQ 1737 (2256)
Q Consensus 1662 Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~--~f~~yl~~ 1737 (2256)
+++.+.... ...+..++..++.++..-+.. .-..++..+.+.+.+.... ++++.+++.++...|. .++||+-.
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 444444322 235667777787776643222 1135677777777776555 9999999999977754 78999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000098 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2256)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~-~~~iR~~sv~llg~ll~~~~g~~~~~~~~ 1816 (2256)
++|.++....|....||.+|..|...++..+.+.++..++|.|...+.+. .|..+..++.+++.+....
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~---------- 165 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA---------- 165 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS----------
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999999999999999999999999999999999999654 6999999999999986210
Q ss_pred CCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHhc
Q 000098 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLA 1895 (2256)
Q Consensus 1817 ~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~ 1895 (2256)
+ ..+.. ...++++.+..+..|...+|..+|..++..++.-.. ..+.+++|.|+..+ .
T Consensus 166 ---------~----~~~~~-----~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~----~ 223 (986)
T 2iw3_A 166 ---------K----DQVAL-----RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCI----A 223 (986)
T ss_dssp ---------H----HHHHH-----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHH----H
T ss_pred ---------H----HHHHH-----hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh----c
Confidence 1 12222 234778888889999999999999999988877443 56778888877665 5
Q ss_pred CCCHHHHHHHHHHHHHHHH-----hhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC-hhhhHhhHhhHHHH
Q 000098 1896 SSSSERRQVAGRALGELVR-----KLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPT 1969 (2256)
Q Consensus 1896 ~~~~~~R~~A~~aL~~lv~-----~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~-~~~l~~~l~~li~~ 1969 (2256)
+++. .-.|+..+.. .+..+.+.-++|.|.+++.+....+++.++..+..+..-.. +....+|++.++|.
T Consensus 224 ~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~ 298 (986)
T 2iw3_A 224 DPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPG 298 (986)
T ss_dssp CTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHH
T ss_pred Chhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhH
Confidence 6644 2233333332 23344678889999999998877666666666666665443 55678999999999
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHHHhc
Q 000098 1970 IRTALC-DSILEVRESAGLAFSTLFKSAG 1997 (2256)
Q Consensus 1970 l~~~L~-D~~~~VR~~A~~al~~l~~~~g 1997 (2256)
+.+... -.+|++|+.|..|+.++.+..+
T Consensus 299 ~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 299 LKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 988764 5789999999999999987644
No 64
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.95 E-value=1.4e-08 Score=116.18 Aligned_cols=188 Identities=19% Similarity=0.204 Sum_probs=149.8
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHh
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~ 1494 (2256)
.++-....+.++..++|+++.+|..|..+++.+.. ...++.+++.+.+.++.+|..++.+|+.+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 44455678888999999999999999999887642 2567888899999999999999999998642
Q ss_pred hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhh
Q 000098 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPS 1573 (2256)
Q Consensus 1495 ~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~ 1573 (2256)
+..++.+...+.|+++.||..|+++|+.++. + ..++.|.+.+.|++..+| .++..++....
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E---RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 3567888889999999999999999998753 2 356777888899988887 46666654211
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~ 1647 (2256)
...++.+...+.+.++.+|..++.+++.+.. +..++.|...+.|+++.||..|..+|+.+.
T Consensus 137 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2356788888999999999999988887732 236677788888999999999999988754
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.95 E-value=1.6e-08 Score=116.76 Aligned_cols=184 Identities=19% Similarity=0.223 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2256)
..++.++..+.|+++.+|..+..+++.+.. ...+|.+++.+.+.++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 345667777888888888888887776532 3456777788888888888888888887642 35
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHH
Q 000098 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2256)
Q Consensus 1500 Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2256)
.++.+...+.|+++.||..|+++|+.++. ...++.|.+.+.|++..+| .++..|+.... ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------HHHH
Confidence 56777788888888888888888887753 1234555555666665554 24444433110 1234
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1579 p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
+.+.+.+.|.++.+|..++.+++.+.. +..++.|...+.|+++.||..|..+|+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 445555555555555555555554421 1234444455555555555555555555443
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.2e-05 Score=105.85 Aligned_cols=547 Identities=12% Similarity=0.081 Sum_probs=295.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV- 1456 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v- 1456 (2256)
.++..+...+...++. ....-+.++-.+...++..|.. +.-++..+ +..-..++||..+.-....+.+..+...-
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 5666666666533344 3445566666777777655544 33333332 23556788888887777666655553322
Q ss_pred --HhHHHHHH-HhccCCChhHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhh-
Q 000098 1457 --KLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV- 1529 (2256)
Q Consensus 1457 --~~ilp~Ll-~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L--~~Ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~- 1529 (2256)
..++..++ +.=.+..-..-..++.++.++....|+..+..+ ..+.|.+.+.+ ......+..++.+.|...|..
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 23333222 100111222333345555555555555433221 34566666666 345566777777777766642
Q ss_pred -cCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1530 -IKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1530 -i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
+++-..+..++.|...+.+ +.+| .|+-.|++..........+...+.+.+.+.+.+...+.|+.|.+.+..+..
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-- 363 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-- 363 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC--
Confidence 2111226777888877765 3444 244444442222212233456688888998888776668888888877753
Q ss_pred CCCCcchhh---hhhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcC-----chHHHHHHHHHHhh-cCCCHHHHHH
Q 000098 1608 TEPKDMIPY---IGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALK-SDNSNVERSG 1677 (2256)
Q Consensus 1608 ~~~~~l~~~---l~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~-----~~~~lip~Ll~~L~-~~~~~~~R~~ 1677 (2256)
++ ++... -+..++.|..++.+ .+..+...+...+..+....... .+.++.++.-.... .++..... .
T Consensus 364 -~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~ 440 (778)
T 3opb_A 364 -KA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-A 440 (778)
T ss_dssp -SS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-H
T ss_pred -CH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-c
Confidence 22 22221 23457777788874 56677778888888877644321 11222221111100 00000000 0
Q ss_pred HHHHHHH-HHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHH---H
Q 000098 1678 AAQGLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES---V 1753 (2256)
Q Consensus 1678 aa~~L~~-i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~---V 1753 (2256)
....+.+ ....+-. .+.+|.++..+.+.++.+|+.++.++..++..-...-.-.-...+++++..+....+. +
T Consensus 441 ~~~~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~ 517 (778)
T 3opb_A 441 AKEDILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPI 517 (778)
T ss_dssp HHHHHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHH
T ss_pred chHHHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHH
Confidence 0111111 1111111 3578889999999999999999999999985532221112236788999998876544 7
Q ss_pred HHHHHHHHHHHHHHhhccc------hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchH
Q 000098 1754 RDAALGAGHVLVEHYATTS------LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2256)
Q Consensus 1754 R~~Al~al~~iv~~~~~~~------~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e 1827 (2256)
|..|..|+..+.-...+.. ....+|.|.+.+.. .++..+. ...+++.
T Consensus 518 k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~-------------------~~~~~~~----~l~~~~~---- 570 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPR-------------------STPVDDN----PLHNDEQ---- 570 (778)
T ss_dssp HHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCC-------------------SSSCSSC----C---CCC----
T ss_pred HHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCC-------------------CCCcccc----ccccccc----
Confidence 8888888887753221110 00122222221110 0000000 0000000
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCh---hHH-HHHHH--HHHHHHHHHhcCCCHHH
Q 000098 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSER 1901 (2256)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~---~~l-~~~l~--~Ll~~L~~~L~~~~~~~ 1901 (2256)
....-+..|+.++..++.... +.. ..++. ..++.+...+.+.+..+
T Consensus 571 ----------------------------~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~V 622 (778)
T 3opb_A 571 ----------------------------IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL 622 (778)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHH
T ss_pred ----------------------------ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHH
Confidence 001113344555666665431 222 33443 36677777788899999
Q ss_pred HHHHHHHHHHHHHhhC---ccch----hc---hHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH--hhHHHH
Q 000098 1902 RQVAGRALGELVRKLG---ERVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPT 1969 (2256)
Q Consensus 1902 R~~A~~aL~~lv~~~~---~~~l----~~---llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l--~~li~~ 1969 (2256)
|..|++++..++..-. ..+. +. =++.|...+...+..+|..++++|+.+...... .....+ ...++.
T Consensus 623 rrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~-ia~~ll~~~~gi~~ 701 (778)
T 3opb_A 623 QRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL-IAKELLTKKELIEN 701 (778)
T ss_dssp HHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH-HHHHHHHccccHHH
Confidence 9999999999996322 1222 11 167788888888999999999998876432221 111111 246677
Q ss_pred HHHHhcC--CCHHHHHHHHHHHHHHHH
Q 000098 1970 IRTALCD--SILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1970 l~~~L~D--~~~~VR~~A~~al~~l~~ 1994 (2256)
+...+.+ +++++|..+..++..+..
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 7777777 899999999999998886
No 67
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.91 E-value=9.7e-06 Score=117.09 Aligned_cols=140 Identities=11% Similarity=0.136 Sum_probs=86.7
Q ss_pred CCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHHhhCcc---
Q 000098 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS------------SSSERRQVAGRALGELVRKLGER--- 1919 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~------------~~~~~R~~A~~aL~~lv~~~~~~--- 1919 (2256)
..+..+|..++..|+.+...... -.++++.+++.++..+.+ .+..+|..|+.++..+++.++..
T Consensus 543 ~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p 621 (1204)
T 3a6p_A 543 TKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP 621 (1204)
T ss_dssp CSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred CCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34567899999988877654321 124666666666665544 23478999999999999988764
Q ss_pred chhchHHHHhhhcCCC---ChhhHHhHHHHHHHHHHhhCh-hhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000098 1920 VLPSIIPILSRGLKDP---SASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2256)
Q Consensus 1920 ~l~~llp~L~~~l~d~---~~~vR~~a~~aL~eii~~~~~-~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~ 1995 (2256)
+++.+...+...+... +...+.....+++.+....++ +....|+..+++.+...+.++ +.+. +......++..
T Consensus 622 ~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~--~~~~-~~s~~~~f~~~ 698 (1204)
T 3a6p_A 622 NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQ--DMHR-VLSDVDAFIAY 698 (1204)
T ss_dssp GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCH--HHHH-HHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccH--HHHH-hhcCHHHHHHH
Confidence 4555655555544322 345566666777655433333 334556888888888777653 3443 33334455555
Q ss_pred hch
Q 000098 1996 AGM 1998 (2256)
Q Consensus 1996 ~g~ 1998 (2256)
+|.
T Consensus 699 ~G~ 701 (1204)
T 3a6p_A 699 VGT 701 (1204)
T ss_dssp HTS
T ss_pred hCC
Confidence 553
No 68
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.91 E-value=7.6e-08 Score=124.83 Aligned_cols=338 Identities=14% Similarity=0.119 Sum_probs=227.0
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc-Cch-hH-
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNP-EI- 1535 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l-~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i-~~~-~i- 1535 (2256)
+|.++..|.++++..+..|+.+|+.++...+..- .-.-...+|.|+.+|.++++.++..|+++|..++..- .+. .+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6778888888888899999999999886554321 1222478999999999999999999999999998641 111 12
Q ss_pred -HhHHHHHHhhhC-CCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhh--------cC--------CCHHHHHHH
Q 000098 1536 -ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETKKKA 1596 (2256)
Q Consensus 1536 -~~lv~~Ll~~l~-d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L--------~d--------~~~~vR~~a 1596 (2256)
...+|.|++.+. +++..++ .+..+|.................+|.+.+.+ .+ .+..+.+.+
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 456899999998 6666665 4555555432222221212236778888877 22 245667799
Q ss_pred HHHHHHHhhhcCCCCcchhhh--hhhhHHHHHhhcC------CCHHHHHHHHHHHHHHHHh-------------------
Q 000098 1597 AQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRG------------------- 1649 (2256)
Q Consensus 1597 ~~~l~~L~~~l~~~~~l~~~l--~~Ll~~L~~~L~d------~~~~VR~~a~~aL~~L~~~------------------- 1649 (2256)
+.++.+++.. +....... +..++.|..++.+ ++..+.+.+..++..++..
T Consensus 164 ~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 164 TGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 9999999862 22111122 2566777766653 3445666666656555310
Q ss_pred ---------h------------------------CcC--chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--
Q 000098 1650 ---------M------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-- 1692 (2256)
Q Consensus 1650 ---------~------------------------g~~--~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-- 1692 (2256)
+ |-+ .....++.+...|.+..+...+..++.+|+.++.+-+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0 000 124578888888888777888899999999987644321
Q ss_pred -----HH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH-HHHHHHHHHHhcCCCC------HHHHHHHH
Q 000098 1693 -----YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-LQQVLPAILDGLADEN------ESVRDAAL 1758 (2256)
Q Consensus 1693 -----~l--~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y-l~~ilp~Ll~~L~d~~------~~VR~~Al 1758 (2256)
.+ ...+|.+++.+.+.+..+|..++.++..++.. .+.... -...+|++++.|...+ +.+...++
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 22 35789999999999999999999999999874 333222 2468999999998753 35666777
Q ss_pred HHHHHHHHHhhcc--ch--hchHHHHHhhcCCC-CHHHHHHHHHHHHHH
Q 000098 1759 GAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1759 ~al~~iv~~~~~~--~~--~~llp~L~~~l~d~-~~~iR~~sv~llg~l 1802 (2256)
.++..++..-... .+ ...+|.|.+.+.+. +.+++..+..++..+
T Consensus 399 ~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 7777765321110 01 12678888888777 889999998888765
No 69
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.88 E-value=9.6e-06 Score=106.81 Aligned_cols=477 Identities=13% Similarity=0.084 Sum_probs=287.4
Q ss_pred hhcCCCCCCChHhHHHhhc--CCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHH
Q 000098 1122 DRYGYDFGTDYSGLFKALS--HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199 (2256)
Q Consensus 1122 ~~~~~~~~~~~~~ll~~l~--~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~ 1199 (2256)
......++. +.-++.++. .....+|..+--.++...+.+++.+.+.+...++...-....+. .. .--..+..
T Consensus 161 ~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~--~~---~~~~~~~~ 234 (778)
T 3opb_A 161 NKFKYNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDV--GN---DPLSIIVK 234 (778)
T ss_dssp HHSCCCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SS---CHHHHHHH
T ss_pred HHcCccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCC--CC---ccHHHHHH
Confidence 345555543 555677665 56889999999888888888887777766666664331111100 11 12333444
Q ss_pred HHHHhhhhhccC-----ChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hhccccccchHHHHHHHhhccCCChhh
Q 000098 1200 ALHSAADVLRTK-----DLPVIMTFLISRALADTNADVRGRMLNAGIMIID--KHGRDNVSLLFPIFENYLNKKASDEEK 1272 (2256)
Q Consensus 1200 aL~~l~~~~~~~-----~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~--~~g~~~~~~Ll~~l~~~L~~~~~~~~~ 1272 (2256)
++..+.++.++- ..+.+.+.+....-..++..+..++++.+...-. ....-..+..+++++..+..
T Consensus 235 ~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~------- 307 (778)
T 3opb_A 235 TLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV------- 307 (778)
T ss_dssp HHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc-------
Confidence 444443332210 0122233333222345667676666665332210 00001123456777766542
Q ss_pred hhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh--cCc---hHHHHHHHHHHHh
Q 000098 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM--QDE---APTLVSRLLDQLM 1347 (2256)
Q Consensus 1273 ~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~--~~~---~~~~l~~Ll~~L~ 1347 (2256)
+.+|..+...|.++...-+..+..+..+.+.+...|.+++...++.+.+.|..+-..- ++. ....+..|++.+.
T Consensus 308 -~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk 386 (778)
T 3opb_A 308 -EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIK 386 (778)
T ss_dssp -GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHh
Confidence 2567777777777765433334457788899999999887666777777766553211 111 2455666777665
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcc----------------------------------------cchhhcHHHHHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGIS----------------------------------------SLKKYGIAATLREGL 1387 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~----------------------------------------~~~~~~il~~L~~~l 1387 (2256)
...+..+-.+++..|+.+....... .+...++++.+...+
T Consensus 387 ~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll 466 (778)
T 3opb_A 387 SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM 466 (778)
T ss_dssp TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG
T ss_pred CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4334455666666666666532210 000124666666666
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhccCchHhH-H-HHHHHHHHHcCCCcHH---HHHHHHHHHHHHHhhhhHhhH------
Q 000098 1388 ADRNSAKRREGALLAFECLCEKLGRLFEPYV-I-QMLPLLLVAFSDQVVA---VREAAECAARAMMSQLSAQGV------ 1456 (2256)
Q Consensus 1388 ~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~-~llp~ll~~l~D~~~~---VR~aa~~al~~l~~~l~~~~v------ 1456 (2256)
... ++..|+.+..++..++.... ....+ . ..++.++..+.+.... +|..|+.++..+.-...+..+
T Consensus 467 ~S~-s~~~re~A~~aL~nLS~d~~--~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~ 543 (778)
T 3opb_A 467 HNL-SPNCKQQVVRIIYNITRSKN--FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA 543 (778)
T ss_dssp GGS-CHHHHHHHHHHHHHHHTSGG--GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred cCC-CHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence 554 78899999999999975422 22222 2 4688888888776544 899999999988754433221
Q ss_pred HhHHHHHHHhccC-CCh-------------hHHHHHHHHHHHHHhhCh---hhHhh-hhh--hHHHHHHHhhcCCCHHHH
Q 000098 1457 KLVLPSLLKGLED-KAW-------------RTKQSSVQLLGAMAYCAP---QQLSQ-CLP--KIVPKLTEVLTDTHPKVQ 1516 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~-~~w-------------~~R~~a~~~Lg~la~~~p---~~l~~-~L~--~Ivp~L~~~L~D~~~~VR 1516 (2256)
...+|+|++.|.. ..- ..+..|+.+|..++.... +.... .+. ..+|.+.+++.+.+..||
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 2578899888872 211 237789999999998752 22222 232 588999999999999999
Q ss_pred HHHHHHHHHHHhhcCchh-H-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000098 1517 SAGQTALQQVGSVIKNPE-I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2256)
Q Consensus 1517 ~aA~~aL~~l~~~i~~~~-i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~ 1594 (2256)
++|++++.+++.. +. + +.+ ....+ +.-..-++.+..++...+.++|+
T Consensus 624 rAA~elI~NL~~~---~e~i~~k~-------~~~~~---------------------~~~~~rL~lLV~Ll~s~D~~~r~ 672 (778)
T 3opb_A 624 RSTLELISNMMSH---PLTIAAKF-------FNLEN---------------------PQSLRNFNILVKLLQLSDVESQR 672 (778)
T ss_dssp HHHHHHHHHHHTS---GGGTGGGT-------SCCSS---------------------HHHHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHHhCC---cHHHHHHH-------HhhcC---------------------chhhccHHHHHHHHcCCCHHHHH
Confidence 9999999999852 21 1 111 00000 11011246677778888899999
Q ss_pred HHHHHHHHHhhhcCCCCcchhhh--hhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHH
Q 000098 1595 KAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1595 ~a~~~l~~L~~~l~~~~~l~~~l--~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~ 1648 (2256)
.|+.++.++... .+......+ +..++.+..++.+ ++..+|..++.++..+++
T Consensus 673 AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 673 AVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 999999988642 211111112 2467777888888 899999999999999997
No 70
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.87 E-value=3.8e-07 Score=118.70 Aligned_cols=344 Identities=13% Similarity=0.093 Sum_probs=222.5
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh--cCch-
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP- 1533 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--i~~~- 1533 (2256)
.-+|.+++.|.+.+...+..|+..|..++...++.-.. .-...+|.|+.+|.+.++.|+..|+++|.+++.. -.+.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 34666667777666666666677777777544332111 1136789999999999999999999999999863 1122
Q ss_pred hH--HhHHHHHHhhhCC-CChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhh------------------cCCCHH
Q 000098 1534 EI--ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAE 1591 (2256)
Q Consensus 1534 ~i--~~lv~~Ll~~l~d-~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L------------------~d~~~~ 1591 (2256)
.+ ...+|.|+..+.. ++..++ .+..+|.................+|.|.+.+ ...+..
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 22 4578888888875 455554 3333443322211111111222355555543 112578
Q ss_pred HHHHHHHHHHHHhhhcCC-CCcchhhhhhhhHHHHHhhc------CCCHHHHHHHHHHHHHHHHhhC-------------
Q 000098 1592 TKKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMG------------- 1651 (2256)
Q Consensus 1592 vR~~a~~~l~~L~~~l~~-~~~l~~~l~~Ll~~L~~~L~------d~~~~VR~~a~~aL~~L~~~~g------------- 1651 (2256)
++..|+.++.+++..-.+ ...+.. ...+++.|...+. +++....+.|+.+|..++....
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 999999999999862101 011111 1344555555543 3566788888888888775421
Q ss_pred --------------cC--chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh------HH--HHHHHHHHHhccC
Q 000098 1652 --------------EE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YF--EHILPDIIRNCSH 1707 (2256)
Q Consensus 1652 --------------~~--~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~------~l--~~ll~~ll~~l~~ 1707 (2256)
-+ +-+..++.++..|.......++..++.+|..++.+-+.. .+ ...+|.++..+.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 00 123567888888876667778999999999887543211 22 4678999999999
Q ss_pred CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHHHHhhc--cch--hc
Q 000098 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYAT--TSL--PL 1775 (2256)
Q Consensus 1708 ~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~--------~~~VR~~Al~al~~iv~~~~~--~~~--~~ 1775 (2256)
++..++..++.++++++...... ...-...+|.++..|.+. .+.+...|+.++..++..-.. ..+ ..
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g 445 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ 445 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 99999999999999999765443 223457899999999865 367788888888777532110 011 22
Q ss_pred hHHHHHhhcCCC--CHHHHHHHHHHHHHHH
Q 000098 1776 LLPAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1776 llp~L~~~l~d~--~~~iR~~sv~llg~ll 1803 (2256)
.+|.|.+.+.+. ..+++..+..++..+.
T Consensus 446 ~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 446 GIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 677888777764 6788888888888875
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.85 E-value=8.1e-08 Score=110.77 Aligned_cols=185 Identities=21% Similarity=0.206 Sum_probs=119.8
Q ss_pred HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHH
Q 000098 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 1536 (2256)
+..++.+++.+.+++|.+|..++..|+.+.. +..+|.|...+.|+++.||..|+++|+.++. .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------G
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 3567778888888899999999988887543 3567778888899999999999999888753 2
Q ss_pred hHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh
Q 000098 1537 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2256)
Q Consensus 1537 ~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~ 1615 (2256)
..++.|.+.+.|++..+| .++..|..... ...++.+...+.+.++.+|..++.+++.+..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------
Confidence 345666667777776666 35555543211 1234566666667777777776666666532
Q ss_pred hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2256)
Q Consensus 1616 ~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~ 1687 (2256)
+..++.|...+.|+++.||..+..+|+.+.. +..++.|.+.+.+ .+..+|..+..+|..+..
T Consensus 142 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAET-GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHH-CCHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhC-CCHHHHHHHHHHHHhcCC
Confidence 1245556666667777777777777766531 4455666555554 445566666666655443
No 72
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.85 E-value=9.9e-08 Score=113.21 Aligned_cols=231 Identities=19% Similarity=0.131 Sum_probs=172.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
.+|.++..+.++++.+|..|..++..+....+.. .+ ...+|.+++.+.+.+..+|..++.+|+.++...++.....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3677888899999999999999999998655421 11 3578999999999999999999999999998655432221
Q ss_pred -hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch--hH--HhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCC-
Q 000098 1497 -LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV- 1569 (2256)
Q Consensus 1497 -L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~- 1569 (2256)
-...+|.++.++.++++.||..|+++|..++..-... .+ ...+|.|.+.+.+++..++ .++..+.........
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1368899999999999999999999999998532111 11 4678999999999988776 466666552221100
Q ss_pred -ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1570 -DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2256)
Q Consensus 1570 -~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~ 1647 (2256)
..-.-...+|.+...+.+.++.+|..++.++++++. ..+...... -...++.+..++.++++.+|..|..+|+.+.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 011123578999999999999999999999999986 222111111 2457889999999999999999999999999
Q ss_pred HhhCcC
Q 000098 1648 RGMGEE 1653 (2256)
Q Consensus 1648 ~~~g~~ 1653 (2256)
...+..
T Consensus 241 ~~~~~~ 246 (252)
T 4hxt_A 241 SGGWLE 246 (252)
T ss_dssp HTCBCC
T ss_pred cCCCcc
Confidence 866544
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.84 E-value=1.2e-07 Score=108.39 Aligned_cols=183 Identities=21% Similarity=0.202 Sum_probs=138.0
Q ss_pred HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHH
Q 000098 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 1536 (2256)
....+.+++.+.+++|.+|..|+..|+.+.. +..++.+.+.+.|+++.||..|+.+|+.++. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~--- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----E--- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H---
Confidence 4567888999999999999999999987643 2567788889999999999999999988753 1
Q ss_pred hHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh
Q 000098 1537 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2256)
Q Consensus 1537 ~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~ 1615 (2256)
..++.|.+.+.|++..+| .++..|..... ...++.+...+.+.++.+|..++.+++.+..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 456777788888888887 46666654211 1356777778888888898888888877742
Q ss_pred hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2256)
Q Consensus 1616 ~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i 1685 (2256)
+..++.|...+.|+++.||..+..+|+.+. .+..++.|.+.+.+ .+..+|..+..+|+.+
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~-------~~~~~~~L~~~l~d-~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIG-------GERVRAAMEKLAET-GTGFARKVAVNYLETH 196 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------SHHHHHHHHHHHHH-CCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 135677778888888889988888888773 24577777777765 5666788777777654
No 74
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.83 E-value=1.3e-07 Score=112.10 Aligned_cols=238 Identities=18% Similarity=0.136 Sum_probs=173.9
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 1537 (2256)
.+|.+++.+.++++.+|..|+.+|+.++...++...... ..++|.++.++.++++.||..|+++|..++..- +....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAIK 80 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHHHH
Confidence 468888999988899999999999999987764332222 368999999999999999999999999997531 11110
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-h
Q 000098 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-Y 1616 (2256)
Q Consensus 1538 lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~ 1616 (2256)
. + .-...+|.+...+.+.++.+|..++.++++++.. .+..... .
T Consensus 81 ~---------------------~------------~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~ 125 (252)
T 4hxt_A 81 A---------------------I------------VDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIV 125 (252)
T ss_dssp H---------------------H------------HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHHHHHHH
T ss_pred H---------------------H------------HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 0 0 0012456677777777888999999999998852 2111111 1
Q ss_pred hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
-...++.+..++.++++.+|..++.+|+.++...... .-...+|.|.+.+.+ .+..+|..++.+++.++......
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHH
Confidence 2357889999999999999999999999998632111 113488999998886 56779999999999887532211
Q ss_pred --H--HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH
Q 000098 1693 --Y--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2256)
Q Consensus 1693 --~--l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y 1734 (2256)
. -.+.++.++..+.++++.+|+.++.+++.++...+..+.+|
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccccc
Confidence 1 14578999999999999999999999999998776654443
No 75
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.83 E-value=4.4e-08 Score=116.43 Aligned_cols=223 Identities=16% Similarity=0.171 Sum_probs=163.7
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
+.+...+.++++.+|..|.+++..+... ..... ...+|.+++.+.+.++.+|..++.+|+.++...++......
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4445566778889999999999776654 22222 35789999999999999999999999999986655432222
Q ss_pred -hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch--hH--HhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCC--
Q 000098 1498 -PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV-- 1569 (2256)
Q Consensus 1498 -~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~-- 1569 (2256)
...+|.++.++.++++.||..|+++|..++..-... .+ ...+|.|.+.+.+++..++ .++..+.........
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 258999999999999999999999999998653322 12 4688999999999888776 466666552221100
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
..-.-..++|.+.+.+.+.++.++..++.++++++. ..+....... ...++.+..++.++++.+|..|..+|+.++.
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 000113567889999999999999999999999985 2222222222 3478889999999999999999999987753
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.79 E-value=7.6e-07 Score=115.44 Aligned_cols=339 Identities=13% Similarity=0.110 Sum_probs=223.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--h
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~ 1455 (2256)
++.+.+.+... ++..+..|..++..++..-. .....+ ...+|.++..+.++++.++..|.+++..++..-+.. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566666665 67788888888888874222 122122 246899999999999999999999999998642221 1
Q ss_pred H--HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh--------cC--------CCHHHH
Q 000098 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TD--------THPKVQ 1516 (2256)
Q Consensus 1456 v--~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L--------~D--------~~~~VR 1516 (2256)
+ ...+|.+++.+. +.+...+..++.+|+.++.+ ++.-.......+|.|+.++ .+ .++.|+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 246899999998 78899999999999999987 3221112237889999988 22 245677
Q ss_pred HHHHHHHHHHHhhcCch--hH---HhHHHHHHhhhCC------CCh-hHHHHHHHHHhcccc------------------
Q 000098 1517 SAGQTALQQVGSVIKNP--EI---ASLVPTLLMGLTD------PND-HTKYSLDILLQTTFV------------------ 1566 (2256)
Q Consensus 1517 ~aA~~aL~~l~~~i~~~--~i---~~lv~~Ll~~l~d------~~~-~vr~al~~L~~~~~~------------------ 1566 (2256)
..|+++|.+++.. ... .+ ...+|.|...+.+ ++. .+..++..+....+.
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999975 211 12 1567777766653 332 233343333221110
Q ss_pred ------------c----------------------CCChhhHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCC
Q 000098 1567 ------------N----------------------TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPK 1611 (2256)
Q Consensus 1567 ------------~----------------------~~~~~~l~~i~p~L~~~L~d-~~~~vR~~a~~~l~~L~~~l~~~~ 1611 (2256)
. ....-.....++.+...+.+ .++.++..++.++.+++. ++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~--~~~~ 317 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA--SKGL 317 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--CSSS
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc--CcCc
Confidence 0 00000112345666666654 468999999999999986 2221
Q ss_pred ---cc-hhhh--hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC--chHHHHHHHHHHhhcCCC-----HHHHHHH
Q 000098 1612 ---DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGA 1678 (2256)
Q Consensus 1612 ---~l-~~~l--~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~--~~~~lip~Ll~~L~~~~~-----~~~R~~a 1678 (2256)
.+ .... ...+|.|..++.+++.+++..|+.+|..++..-.-. .-...+|.|.+.|..... ..+...+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 11 1112 367899999999999999999999999998632111 124578889998887432 2355566
Q ss_pred HHHHHHHHHHhcHh--HH--HHHHHHHHHhccCC-CHHHHHHHHHHHHHhH
Q 000098 1679 AQGLSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~--~l--~~ll~~ll~~l~~~-~~~vR~~al~~l~~La 1724 (2256)
+.+++.++..-... .+ .+.++.+...+.+. +..++..++..+..+.
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 67777776543322 22 46788888888888 8999999888887654
No 77
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.75 E-value=3.6e-06 Score=109.62 Aligned_cols=351 Identities=16% Similarity=0.081 Sum_probs=225.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC---ch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---cc
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---EA--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---IS 1372 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~---~~--~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g---~~ 1372 (2256)
-++.|+..|.++++.+|..++.+|..+.....+ .+ ...|+.|+..| .+.+..++..|+.+|..++.+-+ ..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 357888889999999999888888776642211 11 23566677655 45678999999999999986421 12
Q ss_pred cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc------------------CCCcH
Q 000098 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQVV 1434 (2256)
Q Consensus 1373 ~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l------------------~D~~~ 1434 (2256)
.+.....++.|.+.+....+...++.+..++..|+..-. .-...+...+|.+...+ ..++.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 222346788888888765577888888888888876221 11122334566665543 11257
Q ss_pred HHHHHHHHHHHHHHhhhhH--hhH---HhHHHHHHHhccC------CChhHHHHHHHHHHHHHhhChhhH----------
Q 000098 1435 AVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQL---------- 1493 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~--~~v---~~ilp~Ll~~L~~------~~w~~R~~a~~~Lg~la~~~p~~l---------- 1493 (2256)
.|++.|..++..++..-+. ..+ .-+++.|+..+.+ .+.+....++.+|..+++......
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999988754321 111 2345566665542 455677778888888876532111
Q ss_pred ---------------hh-hhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH
Q 000098 1494 ---------------SQ-CLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556 (2256)
Q Consensus 1494 ---------------~~-~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a 1556 (2256)
.. .-+.+++.++.++. ..++.++++|+++|..++..-. +.-.. .+..
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~-~~~~~---------------~~~~ 350 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW-TYGRY---------------IRSA 350 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS-HHHHH---------------HHHH
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc-cccHH---------------HHHH
Confidence 00 12356777888885 3568899999999988874211 00000 0000
Q ss_pred HHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCC-----
Q 000098 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP----- 1631 (2256)
Q Consensus 1557 l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~----- 1631 (2256)
+ .....+|.|.+++.+.+..+++.++.++.+++... . .-...-...+|.|..+|.++
T Consensus 351 v---------------~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~--~~~~I~~g~ip~LV~LL~~~~~~~~ 412 (584)
T 3l6x_A 351 L---------------RQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-R--NKELIGKHAIPNLVKNLPGGQQNSS 412 (584)
T ss_dssp H---------------TSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-S--CHHHHHHHHHHHHHHTSSSSSCSGG
T ss_pred H---------------HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-h--HHHHHHhCCHHHHHHHhcCCccccc
Confidence 0 00134788888898889999999999999998732 2 21223456889999998865
Q ss_pred ---CHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHH
Q 000098 1632 ---IPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLA 1687 (2256)
Q Consensus 1632 ---~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~-~~~~~R~~aa~~L~~i~~ 1687 (2256)
..+++..++.+|+.++..-.+. .-...+|.|.+.+.+. ....++..|+..|..++.
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 4678888888888887421111 1134788888888774 366678888888887764
No 78
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.73 E-value=9.4e-08 Score=113.57 Aligned_cols=225 Identities=18% Similarity=0.178 Sum_probs=165.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCch-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccc
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSL 1374 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~--~~~ 1374 (2256)
++.+...|.++++++|..++.+|..++....+.. ...++.++..|. +.+..+|..|+.+|+.+..+... ..+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4666667778888899888888866554321111 234566666554 44589999999999999864211 111
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
.....++.+.+.+.++ ++..|+.++.+++.++..........+ ...+|.++..+.++++.+|..+..++..+....+.
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 1235788888888876 799999999999988764332111112 24789999999999999999999999998764332
Q ss_pred hh---H-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000098 1454 QG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1454 ~~---v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2256)
.. + ...+|.+++.+.+.+..+|..++.+|+.++...++...... ..+++.+..++.+.++.||..|+++|.+++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 11 1 45789999999999999999999999999976665433322 3588999999999999999999999998763
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.66 E-value=3.8e-06 Score=107.10 Aligned_cols=315 Identities=13% Similarity=0.030 Sum_probs=198.3
Q ss_pred cHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHHHHhccCchHhHH----HH-------HHHHHHHcCCC---
Q 000098 1378 GIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYVI----QM-------LPLLLVAFSDQ--- 1432 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~-----------~~~~Re~al~al~~L~~~l~~~~~pyv~----~l-------lp~ll~~l~D~--- 1432 (2256)
..+|.+.+.+.... ++..|..|.+++..|+.+-++....... .+ .+.++..+...
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 45666666666432 3788999999999999876554433211 11 13333333221
Q ss_pred ----cHHHHH-------HHHHHHHHHHhhhhH-hhH--HhHHHHHHHhcc-----------CCChhHHHHHHHHHHHHHh
Q 000098 1433 ----VVAVRE-------AAECAARAMMSQLSA-QGV--KLVLPSLLKGLE-----------DKAWRTKQSSVQLLGAMAY 1487 (2256)
Q Consensus 1433 ----~~~VR~-------aa~~al~~l~~~l~~-~~v--~~ilp~Ll~~L~-----------~~~w~~R~~a~~~Lg~la~ 1487 (2256)
...||+ .|.+++..+...-.- ..+ ...++.++..+. +.+...+..|+.+|..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~ 229 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 112665 677777776432111 111 235666666653 1234568889999999998
Q ss_pred hChhhHhh--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhccc
Q 000098 1488 CAPQQLSQ--CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2256)
Q Consensus 1488 ~~p~~l~~--~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~ 1565 (2256)
..+..-.. .....+|.|+.+|.+.+++|+..|+++|..++.. .++.. +.++.
T Consensus 230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~------------------k~~I~------- 283 (458)
T 3nmz_A 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNS------------------KKTLR------- 283 (458)
T ss_dssp TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHH------------------HHHHH-------
T ss_pred CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHH------------------HHHHH-------
Confidence 76432111 2356799999999999999999999999998742 11111 10000
Q ss_pred ccCCChhhHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh--hhhhhHHHHHhhcCCCH----HHHHH
Q 000098 1566 VNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVRSV 1638 (2256)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~-L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~--l~~Ll~~L~~~L~d~~~----~VR~~ 1638 (2256)
-...+|.+.+. +...++.++..++.++.+++....+.+ ... ....+|.|..++.++.. .+++.
T Consensus 284 --------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~ 353 (458)
T 3nmz_A 284 --------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAIIES 353 (458)
T ss_dssp --------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHH
T ss_pred --------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHHHH
Confidence 01234555554 344567788888888888876211100 111 24578888888886544 48999
Q ss_pred HHHHHHHHHHh--hCcCc-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH--hHH--HHHHHHHHHhccC
Q 000098 1639 AARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNCSH 1707 (2256)
Q Consensus 1639 a~~aL~~L~~~--~g~~~-----~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~~l--~~ll~~ll~~l~~ 1707 (2256)
+..+|..++.. .+++. -...+|.|++.|.+ .+..++..++.+|+.+...... ..+ ...+|.++..+.+
T Consensus 354 A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 99999998863 12221 12478999999887 4566889999999988742211 122 4678999999999
Q ss_pred CCHHHHHHHHHHHHHhHhhhCh
Q 000098 1708 QRASVRDGYLTLFKYLPRSLGV 1729 (2256)
Q Consensus 1708 ~~~~vR~~al~~l~~La~~~g~ 1729 (2256)
.+..+|+.++.++..++..-..
T Consensus 433 ~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp SSHHHHHHHHHHHHHHHTCCSC
T ss_pred CCHHHHHHHHHHHHHHHcCCHh
Confidence 9999999999999998876443
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.61 E-value=3e-06 Score=108.04 Aligned_cols=308 Identities=10% Similarity=0.054 Sum_probs=199.9
Q ss_pred HhHHHHHHHhccCC------------ChhHHHHHHHHHHHHHhhChhhHhhh--------h---hhHHHHHHHhhcCCC-
Q 000098 1457 KLVLPSLLKGLEDK------------AWRTKQSSVQLLGAMAYCAPQQLSQC--------L---PKIVPKLTEVLTDTH- 1512 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~------------~w~~R~~a~~~Lg~la~~~p~~l~~~--------L---~~Ivp~L~~~L~D~~- 1512 (2256)
...+|.+++.+... +...|..|..+|..++.+-|++.... + +...+.+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 35678888888742 25889999999999999987764321 1 111233444444321
Q ss_pred -HH-----HHH-------HHHHHHHHHHhhcCch-hH--HhHHHHHHhhhC----------CC-ChhH-HHHHHHHHhcc
Q 000098 1513 -PK-----VQS-------AGQTALQQVGSVIKNP-EI--ASLVPTLLMGLT----------DP-NDHT-KYSLDILLQTT 1564 (2256)
Q Consensus 1513 -~~-----VR~-------aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~----------d~-~~~v-r~al~~L~~~~ 1564 (2256)
.+ |+. .|.++|++++..-.+. .+ ...++.|...+. +. +..+ +.|...|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 665 7888888886532111 12 345666666652 11 1223 34555554432
Q ss_pred cccCCChhh---HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh--hhhhhHHHHHh-hcCCCHHHHHH
Q 000098 1565 FVNTVDAPS---LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKV-LVDPIPEVRSV 1638 (2256)
Q Consensus 1565 ~~~~~~~~~---l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~--l~~Ll~~L~~~-L~d~~~~VR~~ 1638 (2256)
+........ ....+|.+.+.+.+.+.+++..++.++.+++. .+....... -...+|.|..+ +...++.+++.
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~--~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW--RADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTS--SCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhc--CCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 222101111 23468999999999999999999999999975 211111111 12567888886 45678999999
Q ss_pred HHHHHHHHHHhhC---cCc--hHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHHHHH--hcHh---HH--HHHHHHHHH
Q 000098 1639 AARAIGSLIRGMG---EEN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA--LGTV---YF--EHILPDIIR 1703 (2256)
Q Consensus 1639 a~~aL~~L~~~~g---~~~--~~~lip~Ll~~L~~~~~~---~~R~~aa~~L~~i~~~--~g~~---~l--~~ll~~ll~ 1703 (2256)
++.++..++.... ... ....+|.|.+.|....+. .++..++.+|..+... .+.+ .+ .+.+|.++.
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 9999999986321 111 245889999999875432 4677788888877652 2222 11 357899999
Q ss_pred hccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000098 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2256)
Q Consensus 1704 ~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~ 1767 (2256)
.+.+.+..+++.++.++..++.. .++...++ ...+|+|...+...++.+++.|..++..+...
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999742 22223333 35789999999999999999999999888653
No 81
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.56 E-value=3.7e-05 Score=106.55 Aligned_cols=670 Identities=13% Similarity=0.094 Sum_probs=336.0
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc----CCChhHHHHHHHHHH--HHH
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLG--AMA 1486 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~----~~~w~~R~~a~~~Lg--~la 1486 (2256)
.+.+.-..++.-++...-..-..||..|..++..+++.+++ ....++|.+++.|+ +.+...-+||+.+|. .+.
T Consensus 126 ~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g-s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~ 204 (997)
T 1vsy_5 126 KASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG-SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIH 204 (997)
T ss_dssp CCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHH
T ss_pred CCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhh
Confidence 35555667777777777777899999999999999988753 23566677776664 456666777777655 333
Q ss_pred hhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchh----H-HhHHHHHHhhhCCCChhHHHHHHHHH
Q 000098 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE----I-ASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2256)
Q Consensus 1487 ~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~----i-~~lv~~Ll~~l~d~~~~vr~al~~L~ 1561 (2256)
.....+ -..++.+++.++.+.....|+|+.-+......+...+..|. + ..++ ..+..|++.+..+++...
T Consensus 205 ~~~~~d-~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~~~~~~ 279 (997)
T 1vsy_5 205 RKLMTD-YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQVEAVK 279 (997)
T ss_dssp HHGGGC-HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSHHHHHH
T ss_pred hHHhcC-hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHHHHHHH
Confidence 222222 23567889999998877788988887777777776554331 1 2221 223323222111111110
Q ss_pred h--cccccCCChhhHhhHHHHHHHhh-cCCC--HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHH
Q 000098 1562 Q--TTFVNTVDAPSLALLVPIVHRGL-RERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2256)
Q Consensus 1562 ~--~~~~~~~~~~~l~~i~p~L~~~L-~d~~--~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR 1636 (2256)
. ...... -...+..+...+.... .+.. |.....++..+-++.... + .+.-+.++..+.+.+.+++|.+|
T Consensus 280 ~~~~~~r~~-~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~----d-~~~~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 280 LAKKKKREY-YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNL----E-SKPDKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp HHTTHHHHH-HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCS----S-CCCCHHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcC----C-CCCCHHHHHHHHHhhcCCCHHHH
Confidence 0 000000 0001112222222332 2344 777777666655554311 1 34556888899999999999999
Q ss_pred HHHHHHHHHHHHhhCcC-----chHHHHHH--HHHHhh----cCCCHHHHHHHHHHHHHHHHHhcH-h-HHH-H-HHHHH
Q 000098 1637 SVAARAIGSLIRGMGEE-----NFPDLVSW--LLDALK----SDNSNVERSGAAQGLSEVLAALGT-V-YFE-H-ILPDI 1701 (2256)
Q Consensus 1637 ~~a~~aL~~L~~~~g~~-----~~~~lip~--Ll~~L~----~~~~~~~R~~aa~~L~~i~~~~g~-~-~l~-~-ll~~l 1701 (2256)
..|..++..+...+... ..+.+... .-..+. +++..... ...++ +..+. . +++ . ....+
T Consensus 354 ~~a~~~l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~-----~~~~~-~~~~~~~yfid~~~~~Gwl 427 (997)
T 1vsy_5 354 HLVVKSLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKT-----FTEEM-NNFDNPKYFIDLRAYVGWL 427 (997)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHH-----HHHHH-SCCSSCCCBCCSCCCSBTT
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHH-----HHHHH-hcccCCccceeCCCCCeEe
Confidence 99999998888753210 00000000 000000 00111100 00000 00000 0 000 0 00000
Q ss_pred -----HHhcc------CCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----H
Q 000098 1702 -----IRNCS------HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV----E 1766 (2256)
Q Consensus 1702 -----l~~l~------~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv----~ 1766 (2256)
+.... +-++.-+. +...|+ ....+ .++.+++..+.+- ++.++.-+..-...+..++ .
T Consensus 428 ~Wp~~~~vy~p~~~~l~~~~~e~~-i~~~f~---~~~~~---~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~r 499 (997)
T 1vsy_5 428 CWGRLMYVMSPKALKLNLRENELE-VLKTAG---HLLTR---EFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISS 499 (997)
T ss_dssp BCCSEEEEECTTCCCCCCCHHHHH-HHHHHH---TTCCH---HHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTT
T ss_pred eeCCceeEeCCCCCCCCCCHHHHH-HHHHHH---hhcCH---HHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhc
Confidence 00000 01121211 223332 22232 4666666665432 1111111222223333444 4
Q ss_pred HhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHH
Q 000098 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2256)
Q Consensus 1767 ~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl 1846 (2256)
+|++..++.+.|.+++...+++-.-...++++++.++. |...
T Consensus 500 n~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~---gsK~----------------------------------- 541 (997)
T 1vsy_5 500 GFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVC---GSKF----------------------------------- 541 (997)
T ss_dssp TTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSS---CCSS-----------------------------------
T ss_pred ccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh---ccCC-----------------------------------
Confidence 66777778888888876666555455555666655531 1000
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhCccchhchH
Q 000098 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSII 1925 (2256)
Q Consensus 1847 ~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~ll 1925 (2256)
- ........-.-+.+.+.+.+. +-+++.......|+..+......+-.+.++
T Consensus 542 ---------w------------------~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~ 594 (997)
T 1vsy_5 542 ---------M------------------SVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFF 594 (997)
T ss_dssp ---------C------------------CTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHH
T ss_pred ---------C------------------CHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHH
Confidence 0 001111122222233333344 355566666777777777776666666666
Q ss_pred HHHhhh---c--CCCC---hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1926 PILSRG---L--KDPS---ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2256)
Q Consensus 1926 p~L~~~---l--~d~~---~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g 1997 (2256)
..+... + .+.+ ...|..... .++...+-. . +....++..+. +..+...||++-+..+..+....-
T Consensus 595 e~l~~~~~~l~~~~~ssf~~~~rl~ll~---~~l~~~~wr-~-~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 595 CHFINADGMFDRESDAATHQTSKIYMLR---SILMSMEFR-A-PDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp HHHTCCCCCCCCCSSCCCCCCSSHHHHH---HHHHHHTTS-S-CCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHH---HHHHHhccc-c-ccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 666321 1 1111 122333332 233333321 1 11233444444 788899999999998888876431
Q ss_pred hhhHHhHHHHHHHhhccC---------CchHHHHHHHHHHHhh----hc--ccchhhhhhhhhcCchhhhHHHHHHHHHH
Q 000098 1998 MQAIDEIVPTLLHALEDD---------QTSDTALDGLKQILSV----RT--TAVLPHILPKLVHLPLSAFNAHALGALAE 2062 (2256)
Q Consensus 1998 ~~~~~~ilp~Ll~~L~~~---------~~~~~al~~L~~il~~----~~--~~~lp~li~~L~~~p~~~~~~~aL~~La~ 2062 (2256)
...++. +..+++.-.+. .........+.+++.. +. ...-|.- ............++..|..
T Consensus 668 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~---~~~s~y~~~~kTvl~wl~~ 743 (997)
T 1vsy_5 668 NPSISD-PTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQ---FIKTDYFYRTSTIFYWIKE 743 (997)
T ss_dssp CCCBSC-HHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTT---TTTSHHHHHHHHHHHHHHH
T ss_pred ccCCCC-HHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccc---cchHHHHHHHHHHHHHHHH
Confidence 111111 12222221111 0011222222222210 00 0000000 0000000012345566777
Q ss_pred HhCCC----ccccHhh-HHHHHHHhhCCCCH-HHHHH-HHHHHHHHHhhc-chhcHHHHHHHHHhhcC-CCChhhHHHHH
Q 000098 2063 VAGPG----LNFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLVI-DEEGVESLVSELLKGVG-DNQASIRRSSA 2133 (2256)
Q Consensus 2063 ~~g~~----l~~~l~~-Ilp~Ll~~l~~~~~-~vr~~-a~~al~~l~~~~-~~~~~~~ll~~Ll~~l~-~~~~~vR~~A~ 2133 (2256)
.++.. +.++++. ++|.+++..+.++. ++... +..++..+.... ..+.++.++..+.+..+ +.++ .|.+++
T Consensus 744 ~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L 822 (997)
T 1vsy_5 744 MARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQL 822 (997)
T ss_dssp HSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHH
T ss_pred HhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHH
Confidence 77665 6677777 78888776665544 44444 445555554332 44567777777766666 5679 999999
Q ss_pred HHHHHHH-HhchhhhhhhHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHhhccC-C
Q 000098 2134 YLIGYFY-KNSKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-P 2185 (2256)
Q Consensus 2134 ~~l~~l~-~~~~~~~~~y~~~il~~L~~~l~D~d-~~Vr~~A~~aL~~l~~~l-~ 2185 (2256)
..+..|. .+.-.--......+...++.+|.|+. .+||+.|..+|+.+++.. +
T Consensus 823 ~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~ 877 (997)
T 1vsy_5 823 AFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE 877 (997)
T ss_dssp HHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 9987764 33322112233567888888999999 999999999999999877 5
No 82
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.56 E-value=1.6e-06 Score=99.79 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=141.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
..|.+...+.++++.+|..|..++..++..-+.. .+ ...+|.+++.+.+.++.+|..|+.+|+.++...+......
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3456667788999999999999999997543322 12 3578999999999999999999999999997665442222
Q ss_pred h-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhH
Q 000098 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1497 L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l 1574 (2256)
+ ...+|.++.++.++++.||..|+++|.+++..- +.. +.++ -
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~----------------------------------~ 136 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVI----------------------------------D 136 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHH----------------------------------H
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHHHHHH----------------------------------H
Confidence 2 368899999999999999999999999998531 111 1000 0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
...+|.+.+.+.+.++.+|..++.++.+++.. .+..... .-...++.|..++.++++.+|+.|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13567777777777889999999999999862 2111111 123578899999999999999999999998763
No 83
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.53 E-value=9.5e-07 Score=101.60 Aligned_cols=187 Identities=20% Similarity=0.175 Sum_probs=140.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH
Q 000098 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV 1418 (2256)
Q Consensus 1341 ~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~--~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv 1418 (2256)
..+..|.+++++.+|..|+.+|+.+...... ..+.....++.+.+.+.+. ++..|+.++.+++.++..........+
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3444555677899999999999998854321 1112236788888888876 899999999999988743221111111
Q ss_pred -HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1419 -IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1419 -~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
...+|.++..+.++++.+|..+..++..++...+.. .+ ...+|.+++.+.+.+..+|..++.+|+.++...++..
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 236899999999999999999999999987543322 11 3578999999999999999999999999998765543
Q ss_pred hhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000098 1494 SQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1494 ~~~-L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2256)
... -...++.+.+++.+.++.||..|+++|..+++
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 222 23688999999999999999999999999864
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.53 E-value=3.3e-05 Score=80.68 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py 1417 (2256)
.+..++..| +++-|.+|+.|...+..+++..+.-.- +++..+.-++..+.....-++.-.+||.++..-+ ..
T Consensus 33 ~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~el~e---pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~ 104 (253)
T 2db0_A 33 VLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYE---PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----EL 104 (253)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HH
T ss_pred HHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HH
Confidence 334444333 334466666666666666665432111 3344444443322222333334455666655433 23
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
+..++|.++....-.++..|-....+++.++...+ .....+...+...+.+++-.-|..++..++.+.+..++...+
T Consensus 105 v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~P-- 181 (253)
T 2db0_A 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP-- 181 (253)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGG--
T ss_pred HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCc--
Confidence 55677788777666678888878888888887654 334566667777888888888889999999888777666554
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH
Q 000098 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr 1554 (2256)
.+|.+..+|.|.+.-||..|.++|..++.. +|.+..++..-++-+.|+++.+.
T Consensus 182 --fLprL~aLL~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~ 234 (253)
T 2db0_A 182 --FLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVN 234 (253)
T ss_dssp --GHHHHHGGGGCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHH
T ss_pred --chHHHHHHHcCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHH
Confidence 466778899999999999999999999875 56688888888888899887553
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.52 E-value=3.3e-06 Score=98.00 Aligned_cols=174 Identities=14% Similarity=0.091 Sum_probs=130.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHhc---cCchHh-HHHHH
Q 000098 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA---DRNSAKRREGALLAFECLCEKLG---RLFEPY-VIQML 1422 (2256)
Q Consensus 1350 ~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~---~~~~~~~Re~al~al~~L~~~l~---~~~~py-v~~ll 1422 (2256)
.++..|..|...|...+........ ..++.+.+.+. -+.|..+-..++..+..+.+.++ ..+.+| ...++
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3577777777777666554221111 22333344332 13488888888888888877664 346777 57899
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHH-
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV- 1501 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Iv- 1501 (2256)
|.++..+||+.+.||+.+.+.+..+...+++ ..+++.+.+++.+++||+|.+++..++.+....+-.. ...+
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~ 207 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLS 207 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccccc
Confidence 9999999999999999999999888765543 4577888899999999999999999999987654332 2345
Q ss_pred --HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1502 --PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1502 --p~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
|.+..+++|++..||.+|..++..+-...++.
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88899999999999999999999888777654
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.3e-06 Score=105.39 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=142.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHH
Q 000098 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2256)
Q Consensus 1780 L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~ 1859 (2256)
+.+.+.+.+|+.|.++++-+..++....... .+++. .. .+......+...+.|.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~~----------~~-----~~~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDDN----------IQ-----IYWRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------C-----CTTSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchhH----------HH-----HHHHHHHHHHHHhccchHH
Confidence 6678899999999999998887763211100 00000 00 0112223344557899999
Q ss_pred HHHHHHHHHHHHHhcCh------hHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhc
Q 000098 1860 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2256)
Q Consensus 1860 Vr~aA~~~l~~l~~~~~------~~l~~~l~~Ll~~L~~~-L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l 1932 (2256)
|...++.++..++...+ .....++..+++.++.. +++....+|..+..++-.++...+. ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999887543 34556777778877754 7899999999999999888875443 244566677788
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChhhh--HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh
Q 000098 1933 KDPSASRRQGVCIGLSEVMASAGKSQL--LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2256)
Q Consensus 1933 ~d~~~~vR~~a~~aL~eii~~~~~~~l--~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~ 1999 (2256)
...+|.+|.+++.+|..++...|.... .+.++.+++.+..++.|++++||.+|..+++.++..+|..
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 888999999999999999998876533 4556778888889999999999999999999999988853
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.49 E-value=4.1e-05 Score=79.94 Aligned_cols=215 Identities=20% Similarity=0.173 Sum_probs=169.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhc
Q 000098 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2256)
Q Consensus 1299 ~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~ 1378 (2256)
+.+++.++..|.|.-|.||..+...+..+.....+-....+..|+..+.+++....-...+.++|.+++.- ++.+. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-Pe~v~--~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-PELVK--S 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-HHHHH--H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-HHHHH--h
Confidence 56789999999999999999888888888877777677888888888888887766677788888888754 33333 6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
++|.+..+..-. +++.|-+.-.+++.++...+.. +..+..-+...+.+++..-|-++..-++.+..+ +...+.+
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHHHGG
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-CccccCc
Confidence 788888887666 7899999889999998876543 344555566677888887787776666555433 2244678
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
++|.++..+.|++--+|..+++.|+.+|...|+ +..++..-++-++|++..|......+|+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998776 3455666677799999999999999998875
No 88
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.43 E-value=0.00019 Score=99.64 Aligned_cols=696 Identities=11% Similarity=0.048 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhC---CCCHHHHHHHHHHHH--HHHHHh
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD---RNSAKRREGALLAFE--CLCEKL 1410 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~---~~~~~~Re~al~al~--~L~~~l 1410 (2256)
..++..+++ |..+.=..+|+.|..+|...++.+.... ..++|.+.+.++. +.+...-+||+..+. .+....
T Consensus 132 ~~ll~dL~~-Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~---~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~ 207 (997)
T 1vsy_5 132 NLLLVDIIQ-LATSLYPDIYKPAQGTLVHCMKQLVGSY---GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKL 207 (997)
T ss_dssp HHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHTTBTTHH---HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHG
T ss_pred HHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHH
Confidence 455555555 4455557899999999988887763222 2566666666544 345666778877655 333333
Q ss_pred ccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-------------------------------------
Q 000098 1411 GRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------------------------------------- 1453 (2256)
Q Consensus 1411 ~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~------------------------------------- 1453 (2256)
... -.++..+++.++.+...+.+.|...+..+...++.....
T Consensus 208 ~~d-~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 208 MTD-YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGC-HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred hcC-hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 221 134677888888887666666666655554444431100
Q ss_pred hhH----HhHHHHHHHhc-cCCC--hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1454 QGV----KLVLPSLLKGL-EDKA--WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1454 ~~v----~~ilp~Ll~~L-~~~~--w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2256)
... ..+...+++.. .+.. |+....++..+-.+...... ..=++++..+.+.+.|+||.+|..|..++..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 001 12223333443 3456 99988877664444422211 11246788889999999999999999999777
Q ss_pred HhhcCchh-----HHhHH-----HHHHhhhCCCCh-hHHHHHHHHHh---cc-cccCC------C---------------
Q 000098 1527 GSVIKNPE-----IASLV-----PTLLMGLTDPND-HTKYSLDILLQ---TT-FVNTV------D--------------- 1570 (2256)
Q Consensus 1527 ~~~i~~~~-----i~~lv-----~~Ll~~l~d~~~-~vr~al~~L~~---~~-~~~~~------~--------------- 1570 (2256)
...+.... +..+. |.-.....++++ ....-.+.+.+ .. |+... .
T Consensus 364 l~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l 443 (997)
T 1vsy_5 364 CNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKL 443 (997)
T ss_dssp HHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCC
T ss_pred HHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCC
Confidence 65532100 00000 000000000110 11111111111 11 21100 0
Q ss_pred --hhhHhhHHHHHH------------Hh-hcCCC--HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCH
Q 000098 1571 --APSLALLVPIVH------------RG-LRERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633 (2256)
Q Consensus 1571 --~~~l~~i~p~L~------------~~-L~d~~--~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~ 1633 (2256)
.+.-..++..+. .. .+|.. ..-+..-+..+..+..++..... ...++.+.+.+..+..|.+.
T Consensus 444 ~~~~~e~~i~~~f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~-~~~l~~l~~~~e~L~~~~dk 522 (997)
T 1vsy_5 444 NLRENELEVLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFC-ELNMSDLFELCESYYNKDDK 522 (997)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTC-CCCGGGHHHHHHHTCCSSCH
T ss_pred CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHhccccH
Confidence 000011111111 01 11110 00011222334444432211000 12466677788888888888
Q ss_pred HHHHHHHHHHHHHHHhhCc---C----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHH--Hh
Q 000098 1634 EVRSVAARAIGSLIRGMGE---E----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDII--RN 1704 (2256)
Q Consensus 1634 ~VR~~a~~aL~~L~~~~g~---~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll--~~ 1704 (2256)
.-+..+++.++.+..+... + ..+-+.|.+...+.++-.++....=..++.-+....+...+..++..++ +.
T Consensus 523 ~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~ 602 (997)
T 1vsy_5 523 ASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADG 602 (997)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhc
Confidence 8888999999888765421 1 2234666666666632222222111223444445555556677777663 21
Q ss_pred c---cCCC---HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchh---c
Q 000098 1705 C---SHQR---ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP---L 1775 (2256)
Q Consensus 1705 l---~~~~---~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~---~ 1775 (2256)
. .+.+ ...|-. ++..+....|-.+.. .+.++..++ +.++...||+.....+..+....-...++ .
T Consensus 603 ~l~~~~~ssf~~~~rl~---ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~ 676 (997)
T 1vsy_5 603 MFDRESDAATHQTSKIY---MLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTT 676 (997)
T ss_dssp CCCCCSSCCCCCCSSHH---HHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHH
T ss_pred ccCCCCCcHHHHHHHHH---HHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHH
Confidence 1 1111 112222 222222222222211 234444444 78888999998888887776543111111 1
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHH---HHhcchhhHHHHHHHHHH
Q 000098 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII---EVLGRDKRNEVLAALYMV 1852 (2256)
Q Consensus 1776 llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~---~~Lg~e~~~~vl~~L~~~ 1852 (2256)
++...... +..+ + ..... .+......+. +.+...+.+ + ..
T Consensus 677 ~l~~~~~~--~~~~---------------------~------~~~~~--~~~~~~~~i~~~f~~l~~~~~~-~-----~~ 719 (997)
T 1vsy_5 677 LLEAERND--PDGL---------------------G------LPLKS--VPEKVDAYIKKQFEIIKNLEDS-V-----VG 719 (997)
T ss_dssp HHHHHHSC--SSSS---------------------C------CCSSC--CCHHHHHHHHHHHHHHTGGGGT-T-----SS
T ss_pred HHHhhccc--cccc---------------------c------Ccccc--CcchHHHHHHHHHHHHHHhhhc-c-----cc
Confidence 11111100 0000 0 00000 0000000010 111000000 0 00
Q ss_pred hcC----CcH--HHHHHHHHHHHHHH-hcChhHHHHHHHH-HHHHHHHHhcCCCH-HHHHH-HHHHHHHHHHh-hCccch
Q 000098 1853 RSD----VSL--SVRQAALHVWKTIV-ANTPKTLKEIMPV-LMNTLISSLASSSS-ERRQV-AGRALGELVRK-LGERVL 1921 (2256)
Q Consensus 1853 ~~D----~~~--~Vr~aA~~~l~~l~-~~~~~~l~~~l~~-Ll~~L~~~L~~~~~-~~R~~-A~~aL~~lv~~-~~~~~l 1921 (2256)
+.. .+. ..-.+.+..+.... ......+.++++. ++|.+.+.....+. +.... +..++..+... +....+
T Consensus 720 ~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~ 799 (997)
T 1vsy_5 720 LNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHV 799 (997)
T ss_dssp CCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHH
Confidence 000 000 01111121111111 1112235566665 66666544444433 33333 33444443321 122345
Q ss_pred hchHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhch-
Q 000098 1922 PSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGM- 1998 (2256)
Q Consensus 1922 ~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~-~~VR~~A~~al~~l~~~~g~- 1998 (2256)
+.++..+.+... +++. .|..++.-+..+.-..---........+...+..+|.|+. .+||+.|+.+++.+....+.
T Consensus 800 ~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~ 878 (997)
T 1vsy_5 800 AAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE 878 (997)
T ss_dssp HHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH
T ss_pred HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch
Confidence 666666666555 4566 8888776544333211000001112467888888999999 99999999999999875413
Q ss_pred hhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCc--cccHhhHH
Q 000098 1999 QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGL--NFHLGTIL 2076 (2256)
Q Consensus 1999 ~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l--~~~l~~Il 2076 (2256)
...++++..+.+.+........ +...- .... ...+...-+|+++...+.-.+ -+++|.++
T Consensus 879 ~~~~~li~~f~~~~~~~~~~~~----~~~~~---~~~~-----------~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l 940 (997)
T 1vsy_5 879 QPLLSLIERFAKGLDVNKYTSK----ERQKL---SKTD-----------IKIHGNVLGLGAIISAFPYVFPLPPWIPKNL 940 (997)
T ss_dssp HHHHHHHHHHTTSSTTTSSCHH----HHHHH---HHHC-----------HHHHHHHHHHHHHHTTCSCCSSCCTHHHHHH
T ss_pred hhHHHHHHHHHHHHhhcccccc----ccccc---chHH-----------HHHHHHHHHHHHHHhhCCCCCCCCcccHHHH
Confidence 4444455544443322000000 00000 0000 001122334555555555554 56788888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 000098 2077 PALLSAMGDDDMDVQSLAKEAAETVTL 2103 (2256)
Q Consensus 2077 p~Ll~~l~~~~~~vr~~a~~al~~l~~ 2103 (2256)
..|.+...++. .++..+.++++++-.
T Consensus 941 ~~La~~~~~~~-~i~~tvk~tlseFkr 966 (997)
T 1vsy_5 941 SNLSSWARTSG-MTGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHTTSSSCS-SHHHHTHHHHHHHHH
T ss_pred HHHHHHhCCCC-chHHHHHHHHHHHHh
Confidence 77777777644 488888888888765
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.33 E-value=1.9e-05 Score=91.70 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=142.3
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-------hh
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-------PE 1534 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-------~~ 1534 (2256)
.+...+.+.+|+.|..+++.|.......++.+...++-+++-+.-.+.|+++.|-..+...|..+...+.. .+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 34456677899999999999999888888777777666666555567799999999999999988765532 23
Q ss_pred HHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
...++|.|+..+.|+.+.+|+....+...-. . ......+.+.+..++++++|++|..++..++.+....+-+
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~--~--v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS--D--VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH--H--HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--H--HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 4789999999999999988865544432100 0 0123457888888999999999999999999998765432
Q ss_pred hhhhhhh---HHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc
Q 000098 1615 PYIGLLL---PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2256)
Q Consensus 1615 ~~l~~Ll---~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~ 1654 (2256)
+ ...+ |.+..++.|++..||.+|..++..+....|+..
T Consensus 202 ~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 202 P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 2 3467 899999999999999999999999999998763
No 90
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.25 E-value=4.1e-05 Score=92.09 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHhccCchHh-HHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhc
Q 000098 1394 KRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL 1467 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~l~~~~~py-v~~llp~ll~-~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L 1467 (2256)
..|..|+..|..+++..+. -..+ -...+|.++. .+.++++.||..|+++++.++..-+.. .+ ...+|.|+..+
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 4677777777777664331 1111 1246788888 999999999999999999998764432 12 35789999998
Q ss_pred cC-CChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1468 ~~-~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.+ .+..+|..|+.+|+.++.+.+....... ...+|.|+.+|.+.++.|+..|+++|..++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 84 5788999999999999988766443332 36899999999999999999999999999875
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.9e-05 Score=95.04 Aligned_cols=185 Identities=11% Similarity=0.120 Sum_probs=137.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhhCcccch------hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-----
Q 000098 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLK------KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR----- 1412 (2256)
Q Consensus 1344 ~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~------~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~----- 1412 (2256)
+.| .+.+|..|..|...|..++......... ...+.+.+...+.|. |..+.+.++.++..++..++.
T Consensus 16 e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 16 ERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred Hhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 444 5667999999999998888754322111 124556666777665 899999999999999886552
Q ss_pred -CchHhHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh
Q 000098 1413 -LFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2256)
Q Consensus 1413 -~~~pyv~~llp~ll~~-l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p 1490 (2256)
.+..++..++|.++.. ++|....+|..+..++..++..... ...+++.+..++.+++|++|.+++..|..+....+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg 171 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhC
Confidence 2455677889988875 8999999999998888877654322 24466777889999999999999999998886533
Q ss_pred hh---HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1491 QQ---LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1491 ~~---l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
.. ....++.+++.+..++.|+++.||.+|...+..+...++.
T Consensus 172 ~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 172 LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 21 3345667888888899999999999999999999888764
No 92
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.18 E-value=4.7e-05 Score=94.14 Aligned_cols=226 Identities=16% Similarity=0.117 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHHHHHhccCchHhH---HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHH
Q 000098 1392 SAKRREGALLAFECLCEKLGRLFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSL 1463 (2256)
Q Consensus 1392 ~~~~Re~al~al~~L~~~l~~~~~pyv---~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~L 1463 (2256)
+...++.|..++..|+..-.. ....+ ..++|.++..+..+++.+++.|..++..+...-.. ..+ ...+|.+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 356777888888888643221 12222 35699999999999999999999999999753111 222 2468899
Q ss_pred HHhc-cCCChhHHHHHHHHHHHHHhhChhh-Hhhh-hhhHHHHHHHhhcCCCH----HHHHHHHHHHHHHHhhc-CchhH
Q 000098 1464 LKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ-LSQC-LPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVI-KNPEI 1535 (2256)
Q Consensus 1464 l~~L-~~~~w~~R~~a~~~Lg~la~~~p~~-l~~~-L~~Ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~i-~~~~i 1535 (2256)
++.+ .+.+...+..++.+|..++...++. ..-. -...+|.|+.++.+.++ +|+..|+++|..++..+ +++..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 8875 5678899999999999999855432 1111 25789999999987654 59999999999998532 11211
Q ss_pred HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh
Q 000098 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~ 1615 (2256)
.. .+. -...+|.+.+.+.+.+..++..|+.++.+++. +++.....
T Consensus 256 ~~---------------------~i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~ 300 (354)
T 3nmw_A 256 RQ---------------------ILR------------ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEA 300 (354)
T ss_dssp HH---------------------HHH------------TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHH
T ss_pred HH---------------------HHH------------HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 10 000 01256777777888888899999999999974 22221111
Q ss_pred h-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC
Q 000098 1616 Y-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1616 ~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
. -...+|.|..++.+++..+|+.|..+|..++..-+..
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1 1356899999999999999999999999999764433
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.15 E-value=4.5e-05 Score=94.31 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=153.6
Q ss_pred CHHHHHHHHHhhHHhHHhhc---Cch---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---ccchhhcHHHHH
Q 000098 1313 SEAVQRAVSSCLSPLMQSMQ---DEA---PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATL 1383 (2256)
Q Consensus 1313 ~~~Vq~~~~~~L~~lv~~~~---~~~---~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~---~~~~~~~il~~L 1383 (2256)
++.+|+.++.+|..+...-. ..+ ...++.|+..|. +++..++..|+.+|..+...-.. ..+.....++.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 35688888888877753221 111 344777776554 56689999999999999764111 122233677888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHhhh--hHhh
Q 000098 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQL--SAQG 1455 (2256)
Q Consensus 1384 ~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~D~~~----~VR~aa~~al~~l~~~l--~~~~ 1455 (2256)
.+.+....+...++.+..++..|+....+.-...+ ...+|.+...+.+.++ .+++.+..++..+...+ .++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88754444788888888888888763321112222 3578888888876544 58888888998887531 1222
Q ss_pred ---H--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1456 ---v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
+ ...+|.+++.+.+.+..++..|+.+|+.++...+++..... ...+|.|+.++.+.++.+|..|+++|.+++..
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2 24689999999999999999999999999976665432222 36899999999999999999999999999976
Q ss_pred c
Q 000098 1530 I 1530 (2256)
Q Consensus 1530 i 1530 (2256)
-
T Consensus 336 ~ 336 (354)
T 3nmw_A 336 R 336 (354)
T ss_dssp C
T ss_pred C
Confidence 3
No 94
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.04 E-value=5.4e-05 Score=91.00 Aligned_cols=175 Identities=18% Similarity=0.136 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHhhhCcc-cchhhcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH--HHHHHHHHH
Q 000098 1353 GERRGAAFGLAGVVKGFGIS-SLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2256)
Q Consensus 1353 ~vR~~Aa~~L~~lv~~~g~~-~~~~~~il~~L~~-~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~--~llp~ll~~ 1428 (2256)
..|..|...|..++...... .+.....++.+.+ .+.+. ++.+|+.|+++++.++..... ...++. ..+|.++..
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 45666666666666543210 1112245666666 66654 899999999999999864332 222222 478888888
Q ss_pred cC-CCcHHHHHHHHHHHHHHHhhhhH--hhH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHH
Q 000098 1429 FS-DQVVAVREAAECAARAMMSQLSA--QGV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2256)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~l~~~l~~--~~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp 1502 (2256)
+. +++..+|..|.+++..++...++ ..+ ...+|.++..+.+.+.+++..|+.+|+.++.+.++...... ..++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 87 56889999999999999875543 223 35789999999999999999999999999988665433222 36899
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.|+.+|.++++.||..|+.+|++++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 95
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.92 E-value=1.4e-06 Score=118.38 Aligned_cols=220 Identities=15% Similarity=0.057 Sum_probs=122.1
Q ss_pred hchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhH
Q 000098 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2256)
Q Consensus 1922 ~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~ 2001 (2256)
..++|.+.. ++++++..|.++|.+|++++.......+.-+.+.+.+.+..++.|++.+||.+|+.+|..++...|.+..
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 467776654 7888999999999999999864322222222233455667789999999999999999999987777655
Q ss_pred Hh-----HHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccH-hhH
Q 000098 2002 DE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL-GTI 2075 (2256)
Q Consensus 2002 ~~-----ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l-~~I 2075 (2256)
+. ++|.|+..|+...............+....+..++.+.+ ....+|.+|++.....+.... ...
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITG---------SLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHhccc
Confidence 44 788888777542110000000000000000111111111 122344444443322222111 245
Q ss_pred HHHHHHhhC---CCCHHHHHHHHHHHHHHHhhcc-------hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHH-HHHhch
Q 000098 2076 LPALLSAMG---DDDMDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGY-FYKNSK 2144 (2256)
Q Consensus 2076 lp~Ll~~l~---~~~~~vr~~a~~al~~l~~~~~-------~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~-l~~~~~ 2144 (2256)
+|.++..+. ....+++..+..|+..+...-. .++...++..++...++.++..+ .++..+.. ++....
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~-la~giL~Ni~~~~~~ 262 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAV-MACGVLHNVFTSLQW 262 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHH-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHH-HHHHHHHhHhhhhhh
Confidence 566666552 2346899999999998876321 12333455666665566555544 44554444 444444
Q ss_pred hhhhhhHH
Q 000098 2145 LYLVDEAP 2152 (2256)
Q Consensus 2145 ~~~~~y~~ 2152 (2256)
.++.+|..
T Consensus 263 ~d~s~~~~ 270 (684)
T 4gmo_A 263 MDHSPGKD 270 (684)
T ss_dssp BTTBCCGG
T ss_pred hhcchhhH
Confidence 55555543
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.85 E-value=0.00085 Score=73.92 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=155.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----hccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCc
Q 000098 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2256)
Q Consensus 1736 ~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~----~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~ 1811 (2256)
+..+..+...+.|.++.++..++.+++.+.+.. ....+..++|.+.+...+++.++-..|+++++.++...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v----- 106 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV----- 106 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----
Confidence 346677888999999999999999999998874 33346779999999999999999999999999997211
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 000098 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2256)
Q Consensus 1812 ~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~ 1891 (2256)
. ++++.+..+..++.....+.+.-++..++..++.+ .-+ ...+.+++.+.
T Consensus 107 -----------p-------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~-----~~~~~V~~~l~ 156 (265)
T 3b2a_A 107 -----------P-------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL-----EDSKLVRTYIN 156 (265)
T ss_dssp -----------C-------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS-----CCCHHHHHHHH
T ss_pred -----------C-------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc-----cchHHHHHHHH
Confidence 0 22334455666666677777888899999998876 211 23455666666
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHH
Q 000098 1892 SSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2256)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l 1970 (2256)
+.+.+.+..++.++..+|-++....++. .+..++.-+-..++.+++..+..+...+-+++..-=.+.+.+-+..+...+
T Consensus 157 sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v 236 (265)
T 3b2a_A 157 ELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIV 236 (265)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHH
Confidence 6678999999999999999998877654 677777777778888899999888887777664422222222233333333
Q ss_pred HHHh-cCCCHHHHHHHHH
Q 000098 1971 RTAL-CDSILEVRESAGL 1987 (2256)
Q Consensus 1971 ~~~L-~D~~~~VR~~A~~ 1987 (2256)
.... ....|.+|..|..
T Consensus 237 ~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 237 DGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp HHGGGCSSCHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHH
Confidence 3333 4667778776643
No 97
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.81 E-value=8.2e-05 Score=90.71 Aligned_cols=278 Identities=14% Similarity=0.107 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHh
Q 000098 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2256)
Q Consensus 1885 ~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~ 1964 (2256)
.++..+++.+.+++...|...--.+..+.+. .+..+ -+...+.+-++++++-.|-.+..+++.+.. + ..++
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~----~m~~ 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---S----TMLQ 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---T----TTHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---H----HHHH
Confidence 4555666778899999888888887766554 33333 445566666778888888888888776632 2 2346
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCc--hHHHHHHHHHHHhhhcccchhhhhh
Q 000098 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILP 2042 (2256)
Q Consensus 1965 ~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~~lp~li~ 2042 (2256)
.+.+.+.+++.|.++-||.+|+-+...++.. .++.+..+++.+-+.+.+.+- .-+++..+.++... ....+..+++
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kLv~ 216 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKMIS 216 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHHHH
Confidence 6888899999999999999999888877653 455566677777777766542 12455555555432 2234556667
Q ss_pred hhhcCchh--hhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhh
Q 000098 2043 KLVHLPLS--AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2256)
Q Consensus 2043 ~L~~~p~~--~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~ 2120 (2256)
.+...++. ......+..+.......-......+++.+...+++.++.+...+.+++-.+-. .+........+.|...
T Consensus 217 ~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~f 295 (355)
T 3tjz_B 217 KFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLF 295 (355)
T ss_dssp HHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHH
T ss_pred HHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHH
Confidence 66554321 12233444433222111112335677777777888888887777766666533 2222223334455556
Q ss_pred cCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 000098 2121 VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178 (2256)
Q Consensus 2121 l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~ 2178 (2256)
+.++++.+|-.|+..+..+.+..+..+..+ -..+..++.|+|..++.-|..+|-
T Consensus 296 Lss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 296 CSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp HHSSSSSSHHHHHHCC------------------------------------------
T ss_pred HcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHhh
Confidence 678889999999999999988665544443 445668889999888777776653
No 98
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.71 E-value=0.01 Score=76.32 Aligned_cols=174 Identities=19% Similarity=0.226 Sum_probs=115.8
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcc
Q 000098 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1334 ~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~-~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
...+.++.|.+.+.++.-...||.|..+|.++.+........ .-++.+...++++ .|...-..++..+..+ +.
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l---~~- 91 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNI---IS- 91 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHH---HC-
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHH---hC-
Confidence 457889999999999888999999999999998876433222 3455666666543 3443333333322221 11
Q ss_pred CchHhHHHHHHHHHHHcCCCcHH--------HHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHH
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVA--------VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~--------VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~ 1484 (2256)
.|+++. ..+.+.+-.+.+.+. +.-++.++..+++.+..+|..++++|..
T Consensus 92 -----------------~~~~~~~~~~~~~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~alqlL~~ 148 (651)
T 3grl_A 92 -----------------NDEEEEVEENSTRQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPGVKLLTS 148 (651)
T ss_dssp -----------------CC--------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred -----------------CCCcccccccccccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111110 011111111222111 3567889999999999999999999999
Q ss_pred HHhhChhhHhhhh---hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1485 MAYCAPQQLSQCL---PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1485 la~~~p~~l~~~L---~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
++...|+....++ |.-++.|+.+|.|++..+|..+...|..+++. +++++.+
T Consensus 149 L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~--n~~iQkl 203 (651)
T 3grl_A 149 LLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS--NGAIQKI 203 (651)
T ss_dssp HHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 9999988655543 46889999999999999999999999999874 4555433
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.62 E-value=0.00076 Score=82.22 Aligned_cols=275 Identities=11% Similarity=0.069 Sum_probs=150.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhh
Q 000098 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLAL 1576 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~ 1576 (2256)
..+++.+++++..++...|+-+.-.+..+++. . ++.--.+..+.+-+++|++.+|. |+..++... +......
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~-----~~~m~~~ 139 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT-----DSTMLQA 139 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CTTTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC-----CHHHHHH
Confidence 36777788899999999999999999988876 2 33336778889999999999984 888887632 2234567
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchH
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~ 1656 (2256)
+.+.+.+.+.|+++.||+.|+-+...+... .++ ....+++.+..++.|.++.|...|..++..+... + .
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~---d--~ 208 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN---D--R 208 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT---C--H
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh---c--h
Confidence 888899999999999999999888877652 222 3446788889999999999998777777766542 1 1
Q ss_pred HHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1657 DLVSWLLDALKSDN--SNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1657 ~lip~Ll~~L~~~~--~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
..+..+...+.... ++..... +-.++..++.+ .-..+++.+...+++.++.|--.++.++..+......
T Consensus 209 ~a~~kLv~~l~~~~l~~~~~q~~----llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~- 283 (355)
T 3tjz_B 209 LAVSKMISKFTRHGLKSPFAYCM----MIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK- 283 (355)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHH----HHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhcCCCcChHHHHH----HHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH-
Confidence 23333444443321 1211111 11111122222 2356777777778888999988888888776553222
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHH
Q 000098 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~ll 1799 (2256)
.+......+...+..+++++|-.|++.+..++..+. ..+...-..+++.+.|+|-.++.-++..+
T Consensus 284 ---~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 284 ---ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred ---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 122334455556666777899999998888776543 34445566777888888877766555433
No 100
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.57 E-value=0.017 Score=63.86 Aligned_cols=218 Identities=13% Similarity=0.116 Sum_probs=159.3
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhh----hHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQL----SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l----~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2256)
..+..+...+.|.++.++..+..+++.+.+.. ....++.++|.+++.+.+++-++..-|+.+++.+.++.|-.- .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~-~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS-K 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH-H
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH-H
Confidence 35667778889999999999999999998884 334568999999999999999999999999999999876432 3
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhH
Q 000098 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1496 ~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l 1574 (2256)
.+..+...+.....++++-.+..++..++.+ +.. .....++..+.+.+..++.+++. ++..+.++.... .|...+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~--~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S-~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL--EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS-ADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS--CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC-SSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc--cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc-CCHHHH
Confidence 4567888889999999999999999999988 221 12356667777777777777764 566665522211 222345
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh-cCCCHHHHHHHHHHH
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L-~d~~~~VR~~a~~aL 1643 (2256)
..++.-+...+++.++.++..|...+..+.+. .-++.+.+-+-.+.....++. ....|.+|..|-..-
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF-PLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-cccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 55666677788888999999999998888763 222344444444555555555 567788887665433
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.49 E-value=1.8e-05 Score=91.67 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=71.6
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000098 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2256)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L 1504 (2256)
+...++|++..||..+...+ +. +.+...+.|++|.+|.++...+ +. . .+
T Consensus 103 L~~ll~D~d~~VR~~aA~~l-------~~-------~~L~~L~~D~d~~VR~~aA~~l-------~~-------~---~l 151 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQRI-------PP-------G---RL 151 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHHHS-------CG-------G---GG
T ss_pred HHHHHcCCCHHHHHHHHHhC-------CH-------HHHHHHHcCCCHHHHHHHHHhc-------CH-------H---HH
Confidence 34456777777777665432 11 1223345567777777665421 11 1 12
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHH
Q 000098 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2256)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~ 1583 (2256)
..+++|+++.||.++...+ +. +.+...+.|++..||. +...+. .+.+..
T Consensus 152 ~~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l~----------------~~~L~~ 201 (244)
T 1lrv_A 152 FRFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRLR----------------GDDLLE 201 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHCC----------------GGGGGG
T ss_pred HHHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhCC----------------HHHHHH
Confidence 3456777777777776641 11 1233455666666653 222210 123445
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1584 ~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
.+.|.+|.||..++..++ .+.+..+ .|++|.||..+...||
T Consensus 202 Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 566677777766554321 1333334 6777777776665544
No 102
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.41 E-value=5.3e-05 Score=87.73 Aligned_cols=185 Identities=16% Similarity=0.083 Sum_probs=126.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH-HHHHHhcccccCCChhhHhhHHHHHHHh
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2256)
.++.|+++.||..+...+. + ..+...+.|++..||.. ...+ . .+.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------~------~~l~~L~~D~~~~VR~~aA~~L---------~-------~~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------V------EALTPLIRDSDEVVRRAVAYRL---------P-------REQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------G------GGGGGGTTCSSHHHHHHHHTTS---------C-------SGGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------H------HHHHHHccCcCHHHHHHHHHHC---------C-------HHHHHHH
Confidence 4579999999999988641 1 12566788999999853 2221 0 1346677
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHH
Q 000098 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2256)
Q Consensus 1585 L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~ 1664 (2256)
++|.++.||..++.. + .. +.+..+++|+++.||..++..+ +.+ ++.
T Consensus 107 l~D~d~~VR~~aA~~---l----~~------------~~L~~L~~D~d~~VR~~aA~~l-------~~~--------~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADR---L----PL------------EQLEQMAADRDYLVRAYVVQRI-------PPG--------RLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHH---S----CT------------GGGGGGTTCSSHHHHHHHHHHS-------CGG--------GGG
T ss_pred HcCCCHHHHHHHHHh---C----CH------------HHHHHHHcCCCHHHHHHHHHhc-------CHH--------HHH
Confidence 899999999887653 1 11 1234557899999999988732 221 233
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHH
Q 000098 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2256)
Q Consensus 1665 ~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~ 1744 (2256)
.+..|+++.+|..++.. .+.+ .+...+.|+++.||..++..+ +. +.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~~----------~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------RG----------DDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------CG----------GGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHH
Confidence 45567888899888775 2222 233567899999999887642 11 45677
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHH
Q 000098 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2256)
Q Consensus 1745 ~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg 1800 (2256)
++.|+++.||..+..++. .+.+... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 789999999998877643 2455555 8999999998876554
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.41 E-value=3.4e-05 Score=81.12 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhh
Q 000098 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2256)
Q Consensus 1419 ~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2256)
..-.+.+...+.|+++.+|..+..+++.+.. . -++.+.+.+.|.+|.+|..++.+||.+.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----AFEPLLESLSNEDWRIRGAAAWIIGNFQD----------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----T----THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------H
Confidence 3456677788899999999988877765421 1 14888889999999999999999987642 3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHH
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDIL 1560 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L 1560 (2256)
..++.+...++|+++.||..|+++|+.++. ...++.|...+.|++..+|. +..+|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 557788888899999999999999998863 23466677777777776663 44443
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.19 E-value=0.25 Score=66.78 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=95.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH--HHHH-HHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLP-LLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~--~llp-~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
.++|.+.+ +++. ++..|++|+.++..|++... ....+. .+++ .+...+.|++..||.+|+.+++.++..-+.+
T Consensus 35 ~i~Pll~~-L~S~-~~~~r~~A~~al~~l~~~~~--~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 35 KILPVLKD-LKSP-DAKSRTTAAGAIANIVQDAK--CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp TTHHHHHH-HSSS-CCSHHHHHHHHHHHHTTSHH--HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHH-cCCC-CHHHHHHHHHHHHHHHcCcH--HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 56776654 5654 78999999999999986322 122221 3444 4556789999999999999999987654332
Q ss_pred hH-----HhHHHHHHHhccC-------C-------C-------hhHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHh
Q 000098 1455 GV-----KLVLPSLLKGLED-------K-------A-------WRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEV 1507 (2256)
Q Consensus 1455 ~v-----~~ilp~Ll~~L~~-------~-------~-------w~~R~~a~~~Lg~la~~~p~~l~~~-L~~Ivp~L~~~ 1507 (2256)
.. ..+++.+...+.. . . |..-...+.+|..++++..+.+... -...+|.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 21 2366766655421 0 0 1222235667788887766544322 13566666666
Q ss_pred hcC---CCHHHHHHHHHHHHHHHhh
Q 000098 1508 LTD---THPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1508 L~D---~~~~VR~aA~~aL~~l~~~ 1529 (2256)
|.+ ...+|+.+|.++|..+.+.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 632 3468999999999999875
No 105
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.14 E-value=0.00048 Score=72.21 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
-.+.+.+.+.++ ++.+|..++.+++.+ +. +- ++.++..+.|+++.||..+.++++.+.. +.
T Consensus 13 ~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~ 73 (131)
T 1te4_A 13 GLVPRGSHMADE-NKWVRRDVSTALSRM----GD---EA----FEPLLESLSNEDWRIRGAAAWIIGNFQD-------ER 73 (131)
T ss_dssp --------CCSS-CCCSSSSCCSSTTSC----SS---TT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-------HH
T ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---hH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-------HH
Confidence 344555555554 667777666554432 21 11 3777788999999999999998876632 34
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2256)
.++.+.+.+.|.+|.+|..++.+|+.+.. +..+|.|...++|+++.||..|.++|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 57788888889999999999999998742 3567888899999999999999999864
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.83 E-value=0.011 Score=67.72 Aligned_cols=188 Identities=15% Similarity=0.098 Sum_probs=116.4
Q ss_pred hHHHHHHHhccCCCh--hHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC-ch
Q 000098 1458 LVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP 1533 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w--~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~-~~ 1533 (2256)
..+|.+++.|.+++. ..+..|+..+..++...++.-.. .-...+|.|+++|..+++++|..|+++|..++..-. +.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 347888888887777 77777888888888776543211 123678999999999999999999999999986321 11
Q ss_pred -hH--HhHHHHHHhhhC-CCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhh-------c---------CCCHHH
Q 000098 1534 -EI--ASLVPTLLMGLT-DPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGL-------R---------ERSAET 1592 (2256)
Q Consensus 1534 -~i--~~lv~~Ll~~l~-d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L-------~---------d~~~~v 1592 (2256)
.+ ...+|.|++.+. .++..+++ +..+|................-+|.+...+ . ..++++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22 457888888886 45666653 443443322221111112222344444322 1 136789
Q ss_pred HHHHHHHHHHHhhhcCCC---CcchhhhhhhhHHHHHhhc------CCCHHHHHHHHHHHHHHHH
Q 000098 1593 KKKAAQIVGNMCSLVTEP---KDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1593 R~~a~~~l~~L~~~l~~~---~~l~~~l~~Ll~~L~~~L~------d~~~~VR~~a~~aL~~L~~ 1648 (2256)
+..+..++.+++.. ++ +.+.. .+.+++.|...+. +.+...++.+..+|..|+.
T Consensus 168 ~~na~~~L~nLss~--~~~~R~~~r~-~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSSA--GADGRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTTS--CHHHHHHHHT-STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC--CHHHHHHHHH-CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 99999999999862 21 11111 1234555554443 2355778888888877654
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.75 E-value=0.012 Score=65.83 Aligned_cols=144 Identities=18% Similarity=0.158 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~ 1415 (2256)
.+.+..++..|..++...+|.-|+..|+.+ . .. ..+++.+...+.++++|.+|+.+..+|+.++...+..
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~--~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KD--KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TS--HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----Cc--HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 344556788888888899999999977766 2 11 2688888885555569999999999999888744321
Q ss_pred HhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhh-hHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL-SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1416 pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l-~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
..++.+..-..|++..||..|.+......... .......++|.+-....|+++.+|++....|..+++..|+-.
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 25566777889999999999988765432221 112345678877778889999999999999999888776653
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.66 E-value=0.016 Score=65.03 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=96.0
Q ss_pred hhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhh
Q 000098 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLS-AMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2256)
Q Consensus 2042 ~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~-~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~ 2120 (2256)
..|.+.+......-|...|... . ....+++.+.. ...++...||+.+..+++.++...+. +..++.+..+
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~--~----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---e~~l~~~~~W 147 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL--S----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---KKALPIIDEW 147 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT--T----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT---TTTHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc--c----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH---HHHHHHHHHH
Confidence 3455555444444444443333 1 34678888887 55678899999999999999974332 2367788899
Q ss_pred cCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC
Q 000098 2121 VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2256)
Q Consensus 2121 l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~ 2186 (2256)
++|+++.+|+.|...+.-++.. ..+......+++.+-.+.+|++.-||++..++|..+.|.-|.
T Consensus 148 ~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 148 LKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp HHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 9999999999999887654432 223344455677777788999999999999999999887663
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.13 E-value=2.1 Score=55.34 Aligned_cols=230 Identities=15% Similarity=0.115 Sum_probs=130.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc------hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000098 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS------LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810 (2256)
Q Consensus 1737 ~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~------~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~ 1810 (2256)
.-++.++..+..++..+|..++..+..+..+-.... .+.-+|.|...+.|...-+|.+++-++..+...
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~----- 196 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS----- 196 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-----
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC-----
Confidence 557889999999999999999999998886654421 234678899999999999999999999888521
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhcCh---hHHHH--HHH
Q 000098 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTP---KTLKE--IMP 1884 (2256)
Q Consensus 1811 ~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~-~~D~~~~Vr~aA~~~l~~l~~~~~---~~l~~--~l~ 1884 (2256)
. ...+.++..-| -++.++..+-.- ..+ ...|-+-++.++..+..+.+ ..+++ ++|
T Consensus 197 ---------------n-~~iQklVAFEn--aFe~Lf~Ii~~Eg~~~-Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 197 ---------------N-GAIQKIVAFEN--AFERLLDIITEEGNSD-GGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp ---------------C-HHHHHHHHHTT--HHHHHHHHHHHHTGGG-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred ---------------C-HHHHHHHHHhc--cHHHHHHHHHhcCCCc-cchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 0 01122222111 122222221111 111 23455666677777776654 23333 444
Q ss_pred HHHHHHHHHhcCC----CH-HHHHHHHHHHHHHHHhh----Cc---c-------chhchHHHHhhhcCCC--ChhhHHhH
Q 000098 1885 VLMNTLISSLASS----SS-ERRQVAGRALGELVRKL----GE---R-------VLPSIIPILSRGLKDP--SASRRQGV 1943 (2256)
Q Consensus 1885 ~Ll~~L~~~L~~~----~~-~~R~~A~~aL~~lv~~~----~~---~-------~l~~llp~L~~~l~d~--~~~vR~~a 1943 (2256)
.+.+.+ ... .| ..|..-..+.-.+++.+ +. . .-..+++.+.+.+..+ ...+|..+
T Consensus 258 ~L~~LL----~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 258 RMKPWF----EVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp GGGGGG----CCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHh----CCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence 444332 211 11 22322222222333322 11 0 1234556666655443 45688889
Q ss_pred HHHHHHHHHhhChh--hhHh----h---HhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 000098 1944 CIGLSEVMASAGKS--QLLS----F---MDELIPTIRTALCD-SILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1944 ~~aL~eii~~~~~~--~l~~----~---l~~li~~l~~~L~D-~~~~VR~~A~~al~~l~~ 1994 (2256)
+.++++++...... .+.. + .+.++..+...+.+ ...++|-+|+.+|..+..
T Consensus 334 l~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 334 INTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 99999988654321 1111 1 13355545555544 347889999999998874
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.84 E-value=1.6 Score=54.00 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=157.5
Q ss_pred cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCC
Q 000098 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936 (2256)
Q Consensus 1857 ~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~ 1936 (2256)
+...+..|.+.+..+..+.|.--.+-+..+++ ...+.+..+|..|.+.|..+|+. ...+++...|.+.++.++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lD----LcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADSAINAQLD----LCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHH----HHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH----HHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccc
Confidence 46788889999999999888765555555544 45899999999999999999875 678999999999999888
Q ss_pred hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCC
Q 000098 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2256)
Q Consensus 1937 ~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2256)
+..+..+-.+|.+++..-... .+..+...+..+++.+|+.+..-+..-...++...+. .+
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~------------~E 173 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT------------KE 173 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSC------------HH
T ss_pred hHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhcc------------HH
Confidence 888888878887776543222 2333333333357889987554333222222221110 00
Q ss_pred chHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHh------hCCCCHHH
Q 000098 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA------MGDDDMDV 2090 (2256)
Q Consensus 2017 ~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~------l~~~~~~v 2090 (2256)
......+.+++++..-...=+..++.-|... +++ ... .....+++.+... +...|.+.
T Consensus 174 ~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~l--------------kl~-~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~ 237 (507)
T 3u0r_A 174 VEELILTESKKVLEDVTGEEFVLFMKILSGL--------------KSL-QTV-SGRQQLVELVAEQADLEQTFNPSDPDC 237 (507)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHTS--------------GGG-SSH-HHHHHHHHHHHHHHTTTSCCCSSCHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhc--------------ccc-cCc-hHHHHHHHHHHHHHhccCCCCCcCHHH
Confidence 1111222233333111000011111100000 000 111 1112333333332 12234444
Q ss_pred HHHHHHHHHHHHhhcc-----hhcHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHHHHHhch--hhhhhhHHHHHHHH
Q 000098 2091 QSLAKEAAETVTLVID-----EEGVESLVSELLKGVGDNQA-----SIRRSSAYLIGYFYKNSK--LYLVDEAPNMISTL 2158 (2256)
Q Consensus 2091 r~~a~~al~~l~~~~~-----~~~~~~ll~~Ll~~l~~~~~-----~vR~~A~~~l~~l~~~~~--~~~~~y~~~il~~L 2158 (2256)
-+..+.|+..-+-.+. ...+..+...+++.+.+=.. ..+..-+..++.++..++ .+....++.+...|
T Consensus 238 vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 238 VDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp HHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 4444555555544331 13355566666666654322 367778888888888777 33444666666666
Q ss_pred HHHcCCCC-----------------hHHHHHHHHHHHHhhccCC
Q 000098 2159 IVLLSDSD-----------------STTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2159 ~~~l~D~d-----------------~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
...|-.+. -.-.++-.-++..+.+..|
T Consensus 318 ~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P 361 (507)
T 3u0r_A 318 LEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLP 361 (507)
T ss_dssp HTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhCh
Confidence 65553221 1345677777777777766
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.26 E-value=0.2 Score=57.39 Aligned_cols=125 Identities=17% Similarity=0.057 Sum_probs=89.8
Q ss_pred HHHHHHHcCCCcH--HHHHHHHHHHHHHHhhhhH--hhH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHh-
Q 000098 1422 LPLLLVAFSDQVV--AVREAAECAARAMMSQLSA--QGV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS- 1494 (2256)
Q Consensus 1422 lp~ll~~l~D~~~--~VR~aa~~al~~l~~~l~~--~~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~- 1494 (2256)
+|.+...+..+++ .++..+..++..++..-+. ..+ ...+|.+++.|.+++...+..|+.+|..++...++.-.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5666677776655 8887788888877654332 222 34689999999999999999999999999986554311
Q ss_pred hhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCch-h-HHhHHHHHHhhh
Q 000098 1495 QCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP-E-IASLVPTLLMGL 1546 (2256)
Q Consensus 1495 ~~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~-~-i~~lv~~Ll~~l 1546 (2256)
-.-...+|.|+.+|. ..+.++++.|+.+|-.++..-.+. . .+.-+|.|...+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll 144 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENI 144 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCC
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHH
Confidence 111368899999997 468999999999999998643332 2 245567776644
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.93 E-value=4.6 Score=49.94 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=102.3
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~ 1492 (2256)
.|..+-.+.+..++..+.|++..||..|...+-.+++. +.+..+...|.+.|..++...+...-..|-.+....|+.
T Consensus 58 ~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~ 134 (507)
T 3u0r_A 58 HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG 134 (507)
T ss_dssp GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH
Confidence 46677788899999999999999999888777777665 557888889999999888888888888888888877764
Q ss_pred HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc----hhH-HhHHHHHHhhhCCCCh-hHHHHHHHHHhcccc
Q 000098 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEI-ASLVPTLLMGLTDPND-HTKYSLDILLQTTFV 1566 (2256)
Q Consensus 1493 l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~----~~i-~~lv~~Ll~~l~d~~~-~vr~al~~L~~~~~~ 1566 (2256)
. +..++..+.. ++..||..+..-|..-...++. ++. ..++..+.+.+.|-+. ...-.+..|..+...
T Consensus 135 t---l~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~ 207 (507)
T 3u0r_A 135 T---LGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSL 207 (507)
T ss_dssp H---HHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG
T ss_pred H---HHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccc
Confidence 2 2233332222 3578998877777555444432 344 3455556666765542 233344444432222
Q ss_pred cCCChhhHhhHHHHHHH
Q 000098 1567 NTVDAPSLALLVPIVHR 1583 (2256)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~ 1583 (2256)
.. ....+.+++++..
T Consensus 208 ~t--~~g~qeLv~ii~e 222 (507)
T 3u0r_A 208 QT--VSGRQQLVELVAE 222 (507)
T ss_dssp SS--HHHHHHHHHHHHH
T ss_pred cC--chHHHHHHHHHHH
Confidence 21 2234445555444
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.07 E-value=0.79 Score=50.26 Aligned_cols=87 Identities=13% Similarity=0.274 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCC--
Q 000098 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP-- 1935 (2256)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~---~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~-- 1935 (2256)
.+.+..++..|..-.+.+|+..+++.++.++-. .....|..|+..++.+++.++.. ..+.+...+.+.+.|+
T Consensus 66 lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 66 CIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNR 145 (196)
T ss_dssp HHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCC
Confidence 344556666665444455555555555544422 12379999999999999999875 4578888888888776
Q ss_pred ChhhHHhHHHHHHHH
Q 000098 1936 SASRRQGVCIGLSEV 1950 (2256)
Q Consensus 1936 ~~~vR~~a~~aL~ei 1950 (2256)
...+..|+..++..+
T Consensus 146 ~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 146 SEDSQYGALYCLSIL 160 (196)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 467889998887654
No 114
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=93.90 E-value=1.4 Score=48.22 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCC---CHHHHHHHHHHHHHHHHhhCcCc---hHHHHHHHH
Q 000098 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLL 1663 (2256)
Q Consensus 1590 ~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~---~~~VR~~a~~aL~~L~~~~g~~~---~~~lip~Ll 1663 (2256)
...-.....++..+.. +..-.+.||+..++|.+..++... ...+|+.|+..++.++...|..+ .+.+...+.
T Consensus 60 l~~L~~lm~~~~ALl~--N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 60 AEVLKTCIALYFSLIK--NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 3433444455555655 344578999999999998887531 22799999999999999998763 234555555
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHHHHhcHhHHHHHH-HHH
Q 000098 1664 DALKS-DNSNVERSGAAQGLSEVLAALGTVYFEHIL-PDI 1701 (2256)
Q Consensus 1664 ~~L~~-~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll-~~l 1701 (2256)
+.+.+ ..+....-||..++.. +|.+..+.++ |.+
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l 173 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHA 173 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCH
Confidence 55544 3455567777777654 4555444433 544
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.43 E-value=19 Score=41.48 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHH
Q 000098 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPK 1514 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~ 1514 (2256)
..+-....-+..++-+-.+.-.+.+++.+++...+.+...|+-.+..+...+...++ ..+.+++.+..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~----l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE----LLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHH
Confidence 455555555555444434455688889888887788899999999988888755443 4567788888889999999
Q ss_pred HHHHHHHHHHHHHhhcCchhHHhHHHHHHhh-hCCCC--hhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHH
Q 000098 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMG-LTDPN--DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591 (2256)
Q Consensus 1515 VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~-l~d~~--~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~ 1591 (2256)
|.+.+..+...+-.. .++. ..+++ +....+.+.+ ..+...+.+.+...+..
T Consensus 106 V~K~~I~~~~~iY~~------------~l~~i~~~~~~~~~~~~~W~~m--------------~~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 106 VIKRVIQACGSIYKN------------GLQYLCSLMEPGDSAEQAWNIL--------------SLIKAQILDMIDNENDG 159 (257)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHTTSSSCCHHHHHHHHHH--------------HHHHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHHHHHHH------------HHHHHhcCCCCcchHHHHHHHH--------------HHHHHHHHHHHccCCcc
Confidence 999988887766432 2221 12222 1122233222 22444556667778889
Q ss_pred HHHHHHHHHHHHhh
Q 000098 1592 TKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1592 vR~~a~~~l~~L~~ 1605 (2256)
+|..+..++..+.-
T Consensus 160 vkl~~iKF~e~vIl 173 (257)
T 3gs3_A 160 IRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999988888764
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.05 E-value=27 Score=42.57 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHH
Q 000098 1437 REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516 (2256)
Q Consensus 1437 R~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR 1516 (2256)
+-....-+..++-+-.+.-...++|.+++...+.+..+|+..+..|...+....+ .++.+++.|..+++|.++.|.
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e----l~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE----LLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHHHH
Confidence 4444444444433333445578999999998899999999999999888764433 356788888889999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC--hhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000098 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2256)
Q Consensus 1517 ~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~--~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~ 1594 (2256)
+.++.+...+-.. .+..+. .+++ +....+.+.+. .+...+...+...+..+|.
T Consensus 118 K~~I~~~tslYpl--------~f~~i~---~~~~~~~~~e~~W~~m~--------------~lK~~Il~~~ds~n~GVrl 172 (386)
T 3o2t_A 118 KKAILTMTQLYKV--------ALQWMV---KSRVISELQEACWDMVS--------------AMAGDIILLLDSDNDGIRT 172 (386)
T ss_dssp HHHHHHHHHHHHH--------HHHHHH---HC-CCCHHHHHHHHHHH--------------HHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHh---cCCCcchhHHHHHHHHH--------------HHHHHHHHHhccCCcchHH
Confidence 9988888776421 111111 1222 12222333222 2344455566677889999
Q ss_pred HHHHHHHHHhhh
Q 000098 1595 KAAQIVGNMCSL 1606 (2256)
Q Consensus 1595 ~a~~~l~~L~~~ 1606 (2256)
.+..++..+.-.
T Consensus 173 ~aiKFle~VIl~ 184 (386)
T 3o2t_A 173 HAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887643
No 117
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.89 E-value=6.7 Score=55.47 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=94.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhh-------HhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000098 1432 QVVAVREAAECAARAMMSQLS-------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2256)
Q Consensus 1432 ~~~~VR~aa~~al~~l~~~l~-------~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L 1504 (2256)
.++.+|+++.-+++.++...- .+.++.+...+.+.+...+...+..++.+||.+.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 467788888888887776532 22346666666777777777778889999998764 3445555
Q ss_pred HHhhc-------CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC--hhHH-HHHHHHHhcccccCCChhhH
Q 000098 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l 1574 (2256)
.+++. +...+||.+|++||..+.... | +.+-+.+++...|.. ..+| .|+..|..+ .|+.
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55553 224689999999999887431 2 233344555554443 4566 355555431 1333
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
..+..+....-.+++..|+......+.++++
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 3344444444456777777766666666665
No 118
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=89.53 E-value=18 Score=48.97 Aligned_cols=297 Identities=13% Similarity=0.105 Sum_probs=152.7
Q ss_pred HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC---CCHHHHHHHHHHHHHHHhhcCc
Q 000098 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D---~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
++.++|.++.++.+++-.+...+..++..++...|......+|.++..+...|.. .++.--.+++.+|..++..+..
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 4667888888888998888888899999999988844444677888888888776 4555455667777777765432
Q ss_pred -h----hHHhHHHHHHhhhCCCChh--HHHHHHHHHhcccccCCC-h----hhH---hhHHHHHHHhhc-----------
Q 000098 1533 -P----EIASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVD-A----PSL---ALLVPIVHRGLR----------- 1586 (2256)
Q Consensus 1533 -~----~i~~lv~~Ll~~l~d~~~~--vr~al~~L~~~~~~~~~~-~----~~l---~~i~p~L~~~L~----------- 1586 (2256)
+ ++..++..++..+ |+++- +-.++..+......-.+. - ..+ +...|.+.+.+.
T Consensus 417 ~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp STTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred CcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 1 2223333333333 44432 222333333222211110 0 000 001111111110
Q ss_pred --CCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHH
Q 000098 1587 --ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 1663 (2256)
Q Consensus 1587 --d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll 1663 (2256)
|...+.+ .++. ....+..++..++..++.++.. ....+-.....++..+...+.++.++.++..+.
T Consensus 496 ~~d~~~~~~--------~~~~---sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 496 RVDDELLNN--------AFKA---STTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLN 564 (799)
T ss_dssp CCCTTHHHH--------HHHH---HTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHH
T ss_pred cccHHHHHH--------HHHH---HHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0111100 1111 1123455666677777777763 333343445556666777777777777777777
Q ss_pred HHhhcCCCHHHHHHHHHH----HHHHHHHhcHhHHHHHHHHHHHhccC----C------------CHHHHHHHHHHHHHh
Q 000098 1664 DALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCSH----Q------------RASVRDGYLTLFKYL 1723 (2256)
Q Consensus 1664 ~~L~~~~~~~~R~~aa~~----L~~i~~~~g~~~l~~ll~~ll~~l~~----~------------~~~vR~~al~~l~~L 1723 (2256)
+...+..........+.- +..++..-+. .++.++|.+...+.. . ...--.-.+.+++.+
T Consensus 565 ~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~ 643 (799)
T 1vsy_4 565 RNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDV 643 (799)
T ss_dssp HHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHH
Confidence 766653221100111111 3344444444 677777766644321 1 111112234555666
Q ss_pred HhhhChhHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Q 000098 1724 PRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1724 a~~~g~~f~~yl~~ilp~Ll~~L~-d~~~~VR~~Al~al~~iv 1765 (2256)
....|..+.+|-++++..+-..+. ..+..+-..+...+..++
T Consensus 644 v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL 686 (799)
T 1vsy_4 644 LRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSAL 686 (799)
T ss_dssp HTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHH
T ss_pred HhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 666677777787777776665553 334433343444444443
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.35 E-value=25 Score=49.74 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhhCcccchhhcHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhccC----chHhHHHHHHHHHHHcC
Q 000098 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRL----FEPYVIQMLPLLLVAFS 1430 (2256)
Q Consensus 1358 Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~---~~~~~~Re~al~al~~L~~~l~~~----~~pyv~~llp~ll~~l~ 1430 (2256)
|++.|.......-+ ..+++..+...+.. .+++..|+.++.+++.+....... -..++..+...+...+.
T Consensus 375 a~~~l~~~~~~~~P----t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~ 450 (1056)
T 1lsh_A 375 ATQIVASTLSNQQA----TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD 450 (1056)
T ss_dssp HHHHHHHHHHTCCC----CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCC----CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh
Confidence 55666654433211 12466666666644 236788999999999998764211 12445666666666666
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc-------CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHH
Q 000098 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-------DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2256)
Q Consensus 1431 D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~-------~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~ 1503 (2256)
..+...+..+..+++.+.. ...++.+...+. +..-++|..|+.+|..++...|+.. -+.
T Consensus 451 ~~~~~~~~~~LkaLGN~g~-------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v-------~~i 516 (1056)
T 1lsh_A 451 RAKEEEIVLALKALGNAGQ-------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV-------QEI 516 (1056)
T ss_dssp TTCHHHHHHHHHHHHHHTC-------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH-------HHH
T ss_pred cCChHHHHHHHHHhhccCC-------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH-------HHH
Confidence 6666667777777777642 234555555543 2345788999999998886655543 334
Q ss_pred HHHhh--cCCCHHHHHHHHHHHH
Q 000098 1504 LTEVL--TDTHPKVQSAGQTALQ 1524 (2256)
Q Consensus 1504 L~~~L--~D~~~~VR~aA~~aL~ 1524 (2256)
+++.. .+.+++||.+|+..|-
T Consensus 517 l~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 517 VLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHH
Confidence 55555 4568999999988764
No 120
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.49 E-value=26 Score=40.33 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCH
Q 000098 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2256)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~ 1979 (2256)
+.+.....-..+++-.-.+..++++++.+.+...+++..+|.-+...+.+.+.. -..+...+++.+...+.|.++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-----k~~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-----KVELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCH
Confidence 344444444445443333457888888888877777788888777777766532 124667888999899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000098 1980 EVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1980 ~VR~~A~~al~~l~~ 1994 (2256)
.|-..+..++..++.
T Consensus 105 ~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 105 QVIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888888774
No 121
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.05 E-value=63 Score=39.39 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHH
Q 000098 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980 (2256)
Q Consensus 1901 ~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~ 1980 (2256)
.+.....-+.+++-.-....+++++|.+.++..+++..+|.-+...+.+.+.. -..++..+++.+...+.|.++.
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-----~~el~~~~l~~L~~LL~d~d~~ 115 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-----DIELLLKLIANLNMLLRDENVN 115 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHH
Confidence 34444455555544334557899999999988888888998888777777642 2345678889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000098 1981 VRESAGLAFSTLFK 1994 (2256)
Q Consensus 1981 VR~~A~~al~~l~~ 1994 (2256)
|-..+..+++.++.
T Consensus 116 V~K~~I~~~tslYp 129 (386)
T 3o2t_A 116 VVKKAILTMTQLYK 129 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888874
No 122
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=79.24 E-value=1.9e+02 Score=39.04 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=75.3
Q ss_pred chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC---cCchHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHH
Q 000098 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG---EENFPDLVSWLLDALKS--DNSNVERSGAAQGLSEVLA 1687 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g---~~~~~~lip~Ll~~L~~--~~~~~~R~~aa~~L~~i~~ 1687 (2256)
...+...++|.+...+-..+..+...+..++..++.--+ +-.++.++..+...|.. -.+......+..++..++.
T Consensus 333 ~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 333 HEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 345667788888888999999999999999999996433 33445555555555554 3444333445567777776
Q ss_pred HhcH-----hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhh
Q 000098 1688 ALGT-----VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2256)
Q Consensus 1688 ~~g~-----~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~ 1727 (2256)
.+-. .++-+++..++..+.-.++.--..++.++..++...
T Consensus 413 ~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTS
T ss_pred HHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhc
Confidence 5532 244556666666665556665566777777666543
No 123
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.80 E-value=20 Score=37.19 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=71.2
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCCCChHHHHHHHHHHHHhhccC
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
..+....+..|...+++.++.+...|+.++-.+.+++|..+...+ ..++..+.+++...++.|++.+...+-.+....
T Consensus 37 ~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 37 RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 356677778888888999999999999999999999988765433 456666666666678899999999999888776
Q ss_pred CCCchhchHHHHHHHHh
Q 000098 2185 PKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2185 ~~e~l~~lv~~l~~~l~ 2201 (2256)
+.+.--..+..+++.|.
T Consensus 117 ~~~~~l~~i~~~Y~~Lk 133 (140)
T 3ldz_A 117 KNDPQLSLISAMIKNLK 133 (140)
T ss_dssp TTCGGGTHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHH
Confidence 65532334555665555
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.63 E-value=24 Score=37.65 Aligned_cols=95 Identities=12% Similarity=0.152 Sum_probs=70.4
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcc
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D-~d~~Vr~~A~~aL~~l~~~ 2183 (2256)
..+....+..|...+++.++.+...|+.++-.+++++|..+...+ ..++..|.+++.. .++.|++.+...+-.+...
T Consensus 47 ~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 356777888888889999999999999999999999987765433 3466666666654 6789999999999888877
Q ss_pred CCCCchhchHHHHHHHHh
Q 000098 2184 VPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2184 l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+.+.--..+..+++.|.
T Consensus 127 f~~~~~l~~i~~~Y~~Lk 144 (163)
T 1x5b_A 127 FQKDPQFSLISATIKSMK 144 (163)
T ss_dssp TTTCSTTHHHHHHHHHHH
T ss_pred hcCCcccHHHHHHHHHHH
Confidence 665432233445555554
No 125
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=64.49 E-value=1.2e+02 Score=35.80 Aligned_cols=115 Identities=13% Similarity=0.192 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHH-HHHHHHHHhhhhH---hhHHhHHHHHH----Hhcc---CCChhHHHHHHHHHHHH
Q 000098 1417 YVIQMLPLLLVAFSDQVVAVREAA-ECAARAMMSQLSA---QGVKLVLPSLL----KGLE---DKAWRTKQSSVQLLGAM 1485 (2256)
Q Consensus 1417 yv~~llp~ll~~l~D~~~~VR~aa-~~al~~l~~~l~~---~~v~~ilp~Ll----~~L~---~~~w~~R~~a~~~Lg~l 1485 (2256)
+++.++..++.-..+..+..|+.- ..++..++.++.. ..++.++..++ +++. ++-+..|..=..+|.++
T Consensus 70 ~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai 149 (321)
T 1w9c_A 70 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp THHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 344444444444444445444433 3444455555443 23344444433 3444 36788999989999999
Q ss_pred HhhChhhHh----hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000098 1486 AYCAPQQLS----QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1486 a~~~p~~l~----~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~ 1531 (2256)
...|...+- ..+..++..++=.+++++.+|...+...+..+.+.+.
T Consensus 150 ~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 988765532 3456677777778999999999999999988877664
No 126
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=62.42 E-value=72 Score=35.78 Aligned_cols=139 Identities=7% Similarity=0.014 Sum_probs=82.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHH
Q 000098 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420 (2256)
Q Consensus 1341 ~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~ 1420 (2256)
.++..|.+++-.+.|..|+..+....+.... ..++.+...+....+|..-+....+++.+... +-..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-------~~~~ 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-------HLTE 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-------SGGG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------ChHH
Confidence 4455566666677777776666544322211 33444455555566787665433323333222 2223
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2256)
+.+.+..-..+++..+|..|..++ +..........+++.+...+.|+.+-+|.+....|..+....|+....
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 455666778888888888876543 222223334556666666778888999998888888887776665433
No 127
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=62.07 E-value=2.5e+02 Score=33.25 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccc-------hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL-------KKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~-------~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l 1410 (2256)
.+..++..|.. -+++.|+.++.....+++.-..... ..++++..+....++.+- ....|.+...+
T Consensus 79 ll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di-------Al~~G~mLRec 150 (341)
T 1upk_A 79 LLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI-------ALNCGIMLREC 150 (341)
T ss_dssp HHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT-------HHHHHHHHHHH
T ss_pred HHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh-------HhHHHHHHHHH
Confidence 34444444433 3589999999999888874321111 123566777666655421 12233333332
Q ss_pred ccCchHhHHHH-----HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh---H----hhHHhHHHHHHHhccCCChhHHHHH
Q 000098 1411 GRLFEPYVIQM-----LPLLLVAFSDQVVAVREAAECAARAMMSQLS---A----QGVKLVLPSLLKGLEDKAWRTKQSS 1478 (2256)
Q Consensus 1411 ~~~~~pyv~~l-----lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~---~----~~v~~ilp~Ll~~L~~~~w~~R~~a 1478 (2256)
-+ .++....+ +-.+...+..++-+|-..|..+++.+...-. . ...+.++...-..+.++++-+|+.+
T Consensus 151 ir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 21 12222211 2244556777888887777777776643311 1 2234566666777889999999999
Q ss_pred HHHHHHHHhhChh--hHhhhh--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000098 1479 VQLLGAMAYCAPQ--QLSQCL--PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1479 ~~~Lg~la~~~p~--~l~~~L--~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2256)
+.+||.+...... .+..++ +.-+..++.+|+|+...+|-.|...+.-|..
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 9999999876432 222222 3456678889999999999999999998875
No 128
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=62.02 E-value=2.5e+02 Score=33.25 Aligned_cols=204 Identities=17% Similarity=0.192 Sum_probs=127.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hch-----hhH---HhHHHHHHHhhccCCchHHHHHHHHHHHhhhcc
Q 000098 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKS-AGM-----QAI---DEIVPTLLHALEDDQTSDTALDGLKQILSVRTT 2034 (2256)
Q Consensus 1964 ~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~-~g~-----~~~---~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~ 2034 (2256)
..++..+...+..-+-+.|..+...|..+.+. .|. +++ ++++..|+...+..+..-.+-.-|++.+.+.
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e-- 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHE-- 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSH--
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhH--
Confidence 45677777778777888888888888887653 221 111 3455566666655543322222233333210
Q ss_pred cchhhhhhhhhcCchhhhHHHHHHH-HHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcc-------
Q 000098 2035 AVLPHILPKLVHLPLSAFNAHALGA-LAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID------- 2106 (2256)
Q Consensus 2035 ~~lp~li~~L~~~p~~~~~~~aL~~-La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~------- 2106 (2256)
.++. +.. .+.| -.+++.+..++=++...|...+..++....
T Consensus 155 ---------------------~la~~iL~--~~~f--------~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL 203 (341)
T 1upk_A 155 ---------------------PLAKIILW--SEQF--------YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFL 203 (341)
T ss_dssp ---------------------HHHHHHHH--SGGG--------GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred ---------------------HHHHHHhc--cHHH--------HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHH
Confidence 0000 000 1112 234456677777788888888888876422
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHh-c-hhhhhhhH--HHHHHHHHHHcCCCChHHHHHHHHHHHHhhc
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-S-KLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~-~-~~~~~~y~--~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~ 2182 (2256)
....+.++...-..+.+++.-+|+-++.++|.+.-. . ..-+..|+ +.-+..++.+|.|+...++-.|...+--++.
T Consensus 204 ~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 204 EQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 144677888888899999999999999999999653 1 22233343 5667888999999999999999999888774
Q ss_pred cCCCCchhchHHHHHHHHhhhhhh
Q 000098 2183 SVPKEVQPSYIKVIRDAISTSRDK 2206 (2256)
Q Consensus 2183 ~l~~e~l~~lv~~l~~~l~~~~d~ 2206 (2256)
-|.. .+++.+.|...++.
T Consensus 284 -NP~K-----~~~I~~IL~~Nr~k 301 (341)
T 1upk_A 284 -NPNK-----TQPILDILLKNQAK 301 (341)
T ss_dssp -CSSC-----CHHHHHHHHHTHHH
T ss_pred -CCCC-----ChHHHHHHHHHHHH
Confidence 3332 24455555555444
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=59.70 E-value=77 Score=33.09 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=70.3
Q ss_pred hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCC------CChHHHHHHHHHHHH
Q 000098 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALSR 2179 (2256)
Q Consensus 2108 ~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D------~d~~Vr~~A~~aL~~ 2179 (2256)
.+....+..|...+++.++.+-..|+..+-.+.+++|..+-..+ ..++..|.+++.+ .+..|++.+...+-.
T Consensus 44 ~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 123 (149)
T 3g2s_A 44 EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYS 123 (149)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHH
Confidence 56777888888889999999999999999999999987764432 5677888888865 477999999999999
Q ss_pred hhccCCCCchhchHHHHHHHHh
Q 000098 2180 VVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2180 l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
+...++.+ +. +..+++.|.
T Consensus 124 W~~~f~~~--p~-i~~~Y~~Lk 142 (149)
T 3g2s_A 124 WTVGLPEE--VK-IAEAYQMLK 142 (149)
T ss_dssp HHHHCTTC--HH-HHHHHHHHH
T ss_pred HHHHhCCC--ch-HHHHHHHHH
Confidence 98777654 22 444455444
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=59.23 E-value=96 Score=32.33 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=70.1
Q ss_pred hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCC------CChHHHHHHHHHHHH
Q 000098 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALSR 2179 (2256)
Q Consensus 2108 ~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D------~d~~Vr~~A~~aL~~ 2179 (2256)
.+....+..|...+++.++.+...|+.++-.+.+++|..+-..+ ..++..|.+.+.+ .+..|++.+...+-.
T Consensus 34 ~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (148)
T 1mhq_A 34 NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFS 113 (148)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHH
Confidence 56677777888888999999999999999999999988774433 5678888888864 377999999999998
Q ss_pred hhccCCCCchhchHHHHHHHHh
Q 000098 2180 VVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2180 l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
+....+.+ +. +..+++.|.
T Consensus 114 W~~~f~~~--p~-i~~~y~~Lk 132 (148)
T 1mhq_A 114 WTVWFPED--IK-IRDAYQMLK 132 (148)
T ss_dssp HHHHCTTC--HH-HHHHHHHHH
T ss_pred HHHHcCCC--ch-HHHHHHHHH
Confidence 88777654 12 444455444
No 131
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=55.28 E-value=6.4e+02 Score=35.79 Aligned_cols=117 Identities=10% Similarity=0.010 Sum_probs=82.8
Q ss_pred CCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhch
Q 000098 2065 GPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2256)
Q Consensus 2065 g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~ 2144 (2256)
...+..|++.++...-..+.+.++.+++.+......+....+.-+-..++..|+..+.+.+..--.+|+..+..++...+
T Consensus 391 ~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~ 470 (1323)
T 3s4w_B 391 YLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNA 470 (1323)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCH
Confidence 34567788888877777788999999999999999999887654467788888887766665555668888988888777
Q ss_pred hhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc
Q 000098 2145 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2145 ~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~ 2182 (2256)
..+.+|.. ++..++..+++-+..=.+....-|+.++.
T Consensus 471 ~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 471 SAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp HHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Confidence 77777654 45555566666554333333555555543
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=52.43 E-value=1.5e+02 Score=30.84 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=64.0
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCC------CCHH
Q 000098 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENES 1752 (2256)
Q Consensus 1681 ~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d------~~~~ 1752 (2256)
.+.+++..-. ..-...+..+.+.+++.++.+...++.++..+.+..|..|...+ ..++..+...+.+ .++.
T Consensus 24 eicD~I~~~~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~ 102 (148)
T 1mhq_A 24 NFCEQVNTDP-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGK 102 (148)
T ss_dssp HHHHHHHHSS-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHH
T ss_pred HHHHHHHcCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHH
Confidence 3444444322 23345566677788899999999999999999999999886555 4677777777764 3678
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 000098 1753 VRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1753 VR~~Al~al~~iv~~~~~ 1770 (2256)
||.-++..+......|..
T Consensus 103 Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 103 VKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 998888777776666543
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.60 E-value=1.1e+02 Score=32.62 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=69.6
Q ss_pred hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcCC------CChHHHHHHHHHHHH
Q 000098 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALSR 2179 (2256)
Q Consensus 2108 ~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~D------~d~~Vr~~A~~aL~~ 2179 (2256)
.+....+..|...+++.++.+...|+.++-.+++++|..+...+ ..++..|.+++.. .+..|++.+...+-.
T Consensus 46 ~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 46 EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 46677788888889999999999999999999999987765433 4567778887753 367999999999999
Q ss_pred hhccCCCCchhchHHHHHHHHh
Q 000098 2180 VVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2180 l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
+....+.+ ..+..+++.|.
T Consensus 126 W~~~f~~~---~~i~~~y~~Lk 144 (171)
T 1juq_A 126 WTMALPEE---AKIKDAYHMLK 144 (171)
T ss_dssp HHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHcCCC---cHHHHHHHHHH
Confidence 98877654 12444555554
No 134
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=49.29 E-value=1.1e+02 Score=32.29 Aligned_cols=95 Identities=8% Similarity=0.068 Sum_probs=67.6
Q ss_pred hhcHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHH-HHHHcC---CCChHHHHHHHHHHHH
Q 000098 2107 EEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST-LIVLLS---DSDSTTVAAAWEALSR 2179 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~-~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~-L~~~l~---D~d~~Vr~~A~~aL~~ 2179 (2256)
+.+....+..|...++ +.++.+...|+.++-.+.+++|..+...+ ..++.. |++.+. +++..|++.+...+-.
T Consensus 48 ~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 48 EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 3567788888888897 47899999999999999999988776543 346666 667664 4556899999998888
Q ss_pred hhccCCCCchhchHHHHHHHHh
Q 000098 2180 VVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2180 l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
+....+.+.--..+..+++.|.
T Consensus 128 W~~~f~~~p~l~~i~~~Y~~Lk 149 (157)
T 1elk_A 128 WADAFRSSPDLTGVVTIYEDLR 149 (157)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCcchHHHHHHHHHHH
Confidence 8766653311123444555554
No 135
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=48.69 E-value=1.3e+02 Score=35.66 Aligned_cols=114 Identities=5% Similarity=0.071 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhCCCccccHhhHHHHHHHhh----CC---CCHHHHHHHHHHHHHHHhhc-------chhcHHHHHHHHH
Q 000098 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAM----GD---DDMDVQSLAKEAAETVTLVI-------DEEGVESLVSELL 2118 (2256)
Q Consensus 2053 ~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l----~~---~~~~vr~~a~~al~~l~~~~-------~~~~~~~ll~~Ll 2118 (2256)
...++..+....|..+.++++.|+..++..- .. +.++.|..-..-+.++...+ +++....+++.++
T Consensus 94 VL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsii 173 (321)
T 1w9c_A 94 VLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSII 173 (321)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 4567777788889999999999999988752 32 45888888888888777654 3466788999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHhch--hh-----hhhhHHHHHHHHHHHcCCCC
Q 000098 2119 KGVGDNQASIRRSSAYLIGYFYKNSK--LY-----LVDEAPNMISTLIVLLSDSD 2166 (2256)
Q Consensus 2119 ~~l~~~~~~vR~~A~~~l~~l~~~~~--~~-----~~~y~~~il~~L~~~l~D~d 2166 (2256)
-+.++.+.++-..++..+-.+.++.. .+ +..|.-.++..++..+.|++
T Consensus 174 Wa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 174 WAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 99999999999999988888766542 11 45567788888888887765
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=48.10 E-value=58 Score=33.54 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=51.8
Q ss_pred HhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC-----CC------CHHHHHHHHH
Q 000098 1691 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-----DE------NESVRDAALG 1759 (2256)
Q Consensus 1691 ~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~-----d~------~~~VR~~Al~ 1759 (2256)
.+.+..+|+.|.+.+++.++.++--++.++.+++....+.|...+..=...|-.+.+ |+ ...||..|.+
T Consensus 44 ~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 44 VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 345688999999999999999999999999999988888877666554443332221 21 1356666655
Q ss_pred HHHHH
Q 000098 1760 AGHVL 1764 (2256)
Q Consensus 1760 al~~i 1764 (2256)
.+..|
T Consensus 124 l~~ll 128 (140)
T 1vdy_A 124 TISAI 128 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=45.35 E-value=1.4e+02 Score=31.72 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=60.4
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCC-CCHHHHHHH
Q 000098 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD-ENESVRDAA 1757 (2256)
Q Consensus 1681 ~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d-~~~~VR~~A 1757 (2256)
.+.+++..- ...-...+..|.+.+.+.++.+...++.++..+.+..|..|...+ ..++..+...+.. .++.||..+
T Consensus 38 eicD~I~~~-~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~ki 116 (163)
T 1x5b_A 38 DICDKVGST-PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKL 116 (163)
T ss_dssp HHHHHHHHS-SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHH
Confidence 344444432 123455666777888899999999999999999999999886433 2344545444443 467899888
Q ss_pred HHHHHHHHHHhhc
Q 000098 1758 LGAGHVLVEHYAT 1770 (2256)
Q Consensus 1758 l~al~~iv~~~~~ 1770 (2256)
+..+......|..
T Consensus 117 l~li~~W~~~f~~ 129 (163)
T 1x5b_A 117 KSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcC
Confidence 8777766666653
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=43.89 E-value=1.1e+02 Score=31.57 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1694 l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
-...+..+.+.+.+.++.+...++.++..+.+..|..|...+ ..++..+...+...++.|+...+..+......|..
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 345666777888889999999999999999999999876433 34455555544456788888887777766666654
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=43.87 E-value=1.6e+02 Score=30.65 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCC------CCHHHHHHHHHHHHHHH
Q 000098 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1694 l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d------~~~~VR~~Al~al~~iv 1765 (2256)
-...+..+.+.+++.++.+...++.++..+.+..|..|...+ ..++..+.+.+.+ .++.||.-.+..+....
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345666777888899999999999999999999999885443 3556666666654 46789988888777776
Q ss_pred HHhhc
Q 000098 1766 EHYAT 1770 (2256)
Q Consensus 1766 ~~~~~ 1770 (2256)
..|..
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 66643
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.91 E-value=1.4e+02 Score=33.45 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=68.3
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcc
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~-D~d~~Vr~~A~~aL~~l~~~ 2183 (2256)
..+....+..|...+++.++.+...|+.++..+.+++|..+-..+ ..++..|.++++ ..+..|++.+...+-.+...
T Consensus 40 ~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 40 DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 456778888888899999999999999999999999887654322 344455554443 35789999999999988877
Q ss_pred CCCCchhchHHHHHHHHh
Q 000098 2184 VPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2184 l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+.+.--..+..+++.|.
T Consensus 120 f~~~~~l~~i~~~Y~~Lk 137 (226)
T 3zyq_A 120 FRNEPKYKVVQDTYQIMK 137 (226)
T ss_dssp TTTCGGGHHHHHHHHHHH
T ss_pred hCCCcchHHHHHHHHHHH
Confidence 765432234555565555
No 141
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=37.44 E-value=1.9e+02 Score=29.44 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=58.6
Q ss_pred hhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.++...+..++|.|+..++|-+|-+....+..|..+ + +.++|.+.+.++..+..-. .+.|..+...
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~----~-------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~ 88 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLH----Q-------SIAMPHILTILQGNDIMWK---YWVIKLMIPY 88 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT----H-------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGG
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHc----c-------HhhHHHHHHHHHcCChHHH---HHHHHHHHHc
Confidence 345567889999999999999999888777766532 2 3566667777765554433 3445555544
Q ss_pred cCchhHHhHHHHHHhhhCCCC
Q 000098 1530 IKNPEIASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1530 i~~~~i~~lv~~Ll~~l~d~~ 1550 (2256)
+.......+.+.|......|.
T Consensus 89 ~~~~~~~~l~~eL~rl~~~pt 109 (134)
T 3ut4_A 89 LIYPNKQLVKSELERLSSLEI 109 (134)
T ss_dssp CCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 443445677778888777774
No 142
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=37.33 E-value=6.5e+02 Score=30.68 Aligned_cols=252 Identities=12% Similarity=0.132 Sum_probs=121.1
Q ss_pred CCChhHHHHHHHHHHHHHhh---ChhhHhhhhh-hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH-HhHHHH
Q 000098 1469 DKAWRTKQSSVQLLGAMAYC---APQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI-ASLVPT 1541 (2256)
Q Consensus 1469 ~~~w~~R~~a~~~Lg~la~~---~p~~l~~~L~-~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i-~~lv~~ 1541 (2256)
+.+|-.-....+.+..+... .|+....+++ .++-.|+.++..++++-|......|.++-..+.. +.+ +.+-..
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni 174 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 174 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 56777777777777666654 1332333333 3667788899999999999988888876554322 233 233334
Q ss_pred HHhhhCCC--ChhHHHHHHHHHh--cccccCCChhhHhhHHHHHHHhhcCCCHHH-HHHHHHHHHHHhhhcCCCCcchhh
Q 000098 1542 LLMGLTDP--NDHTKYSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPY 1616 (2256)
Q Consensus 1542 Ll~~l~d~--~~~vr~al~~L~~--~~~~~~~~~~~l~~i~p~L~~~L~d~~~~v-R~~a~~~l~~L~~~l~~~~~l~~~ 1616 (2256)
+...+-+. ...+.+.++.++. ..|.......+...+..++..+-+.++... -..-..++..+.+ .++.-
T Consensus 175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~e--KDp~L---- 248 (403)
T 3fga_B 175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE--KDSTL---- 248 (403)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHH--HCGGG----
T ss_pred HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH--hCchh----
Confidence 44433222 2344455555554 234333333333223333333322222110 1112223333333 22211
Q ss_pred hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc---CCCHHHHHHHHHH-----HHHHHHH
Q 000098 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS---DNSNVERSGAAQG-----LSEVLAA 1688 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~---~~~~~~R~~aa~~-----L~~i~~~ 1688 (2256)
...++..+....--.++.-...-..-+..+.+.+++..+..++..++..+.. .....+-..|..- +..++..
T Consensus 249 ~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~ 328 (403)
T 3fga_B 249 TEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 328 (403)
T ss_dssp HHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH
Confidence 1123333333333333433334455566666666655555555555544432 2344444444321 2333333
Q ss_pred hcHhHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhHhh
Q 000098 1689 LGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRS 1726 (2256)
Q Consensus 1689 ~g~~~l~~ll~~ll~~l~-~~~~~vR~~al~~l~~La~~ 1726 (2256)
.....+.-+.|.+.++.. +-+..+|..+..++..+...
T Consensus 329 n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 329 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp THHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 222234445555555443 44888888877776655443
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=36.15 E-value=2.8e+02 Score=32.87 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch----hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH
Q 000098 2076 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2256)
Q Consensus 2076 lp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~ 2151 (2256)
+..|++.....+.+...-++.|+..+..+.+. -.-..++..+...+.+.+..+-+.|+..+-.++......+.-+.
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Q ss_pred HHHH-----------HHHHHHcC---CCChHHHHHHHHHHHHhhccCCCCc-hhchHHHHHH
Q 000098 2152 PNMI-----------STLIVLLS---DSDSTTVAAAWEALSRVVASVPKEV-QPSYIKVIRD 2198 (2256)
Q Consensus 2152 ~~il-----------~~L~~~l~---D~d~~Vr~~A~~aL~~l~~~l~~e~-l~~lv~~l~~ 2198 (2256)
..+- ..++..|. ..|.++..+|..-++.+....|.+. +..+...+.+
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~ 303 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQ 303 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
No 144
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=35.65 E-value=2.4e+02 Score=31.67 Aligned_cols=139 Identities=9% Similarity=-0.043 Sum_probs=75.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHhccCchHhHHH
Q 000098 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGA-LLAFECLCEKLGRLFEPYVIQ 1420 (2256)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~a-l~al~~L~~~l~~~~~pyv~~ 1420 (2256)
++..|.+++..+.|..|...+....+...+ ..++.+...+...++|.+-... -.+++.+...-. ..
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p-------~~ 131 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINE------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHP-------EL 131 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCG------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCG-------GG
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCH-------HH
Confidence 444455555455555444443322222211 2344555556556678765533 122232222211 11
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
+.+.+..-..|++..+|..|...+ +..........+++.+...+.|+.+.++.+...+|..+....|+....+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ---LKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH---HHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 334555667788888888876543 2222223345566666677788899999988888888887776654433
No 145
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=35.23 E-value=60 Score=33.45 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=51.7
Q ss_pred hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHc-----CCC------ChHHHHHHHHH
Q 000098 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL-----SDS------DSTTVAAAWEA 2176 (2256)
Q Consensus 2108 ~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l-----~D~------d~~Vr~~A~~a 2176 (2256)
+....+|+.|...+.+.++.+..-|+.+|-+++.+....+...+..-+..+-.+. .|+ ...||+.|-++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 3357889999999999888899999999999998877666555443333221111 132 14799999888
Q ss_pred HHHhh
Q 000098 2177 LSRVV 2181 (2256)
Q Consensus 2177 L~~l~ 2181 (2256)
+..|.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
No 146
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=34.41 E-value=1.7e+02 Score=30.64 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=67.2
Q ss_pred hhcHHHHHHHHHhhcCC-CChhhHHHHHHHHHHHHHhchhhhhhhHH--HHHHH-HHHHcCCC---ChHHHHHHHHHHHH
Q 000098 2107 EEGVESLVSELLKGVGD-NQASIRRSSAYLIGYFYKNSKLYLVDEAP--NMIST-LIVLLSDS---DSTTVAAAWEALSR 2179 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~-~~~~vR~~A~~~l~~l~~~~~~~~~~y~~--~il~~-L~~~l~D~---d~~Vr~~A~~aL~~ 2179 (2256)
..+....+..|...+++ .++.+-..|+.++..+.+++|..+-..+. .++.. |.+++.++ ...|++.+...+-.
T Consensus 48 ~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~ 127 (152)
T 3rru_A 48 QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKT 127 (152)
T ss_dssp TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 35677778888888874 56777777999999999999987765542 55654 56666543 45799999999999
Q ss_pred hhccCCCCchhchHHHHHHHHh
Q 000098 2180 VVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2180 l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
+....+.+.--..+..+++.|.
T Consensus 128 Wa~~F~~~p~l~~i~~~Y~~Lk 149 (152)
T 3rru_A 128 WSQGFPGGVDVSEVKEVYLDLV 149 (152)
T ss_dssp HHTCCSSSCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHH
Confidence 9887765432244555555554
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=34.17 E-value=2.9e+02 Score=29.47 Aligned_cols=90 Identities=10% Similarity=0.038 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCC------CCH
Q 000098 1680 QGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENE 1751 (2256)
Q Consensus 1680 ~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d------~~~ 1751 (2256)
..+.+++..-. ..-...+..|.+.+++.++.+...++.++..+.+..|..|...+ ..++..+...+.. .+.
T Consensus 35 leicD~I~~~~-~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 113 (171)
T 1juq_A 35 IGFCDQINKEL-EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSE 113 (171)
T ss_dssp HHHHHHHHHST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCH
T ss_pred HHHHHHHHcCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCH
Confidence 34444444332 23345666777888899999999999999999999999886443 3456666666542 357
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 000098 1752 SVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1752 ~VR~~Al~al~~iv~~~~~ 1770 (2256)
.||..++..+......|..
T Consensus 114 ~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 114 KVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 8999888887777666653
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.24 E-value=2e+02 Score=32.17 Aligned_cols=95 Identities=9% Similarity=0.027 Sum_probs=66.8
Q ss_pred hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcc
Q 000098 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2256)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~~l~-D~d~~Vr~~A~~aL~~l~~~ 2183 (2256)
+.+....+..|...+++.++.+...|+.++..+++++|..+-..+ ..++..|...+. ..+..|++.+.+-+-.+...
T Consensus 37 ~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 37 DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 356777888888889999999999999999999999887664332 235555555554 45789999998888887766
Q ss_pred CCCCchhchHHHHHHHHh
Q 000098 2184 VPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2184 l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+.+.--..+...++.|.
T Consensus 117 f~~~~~~~~i~~~y~~Lk 134 (220)
T 1dvp_A 117 FRSSDKYQAIKDTMTILK 134 (220)
T ss_dssp TTTCSSCCHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHh
Confidence 654322223444455444
No 149
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=31.11 E-value=5e+02 Score=29.03 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=74.5
Q ss_pred CCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHhhhCcccchhhcHHHHHHHHHh
Q 000098 1310 NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA-FGLAGVVKGFGISSLKKYGIAATLREGLA 1388 (2256)
Q Consensus 1310 ~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa-~~L~~lv~~~g~~~~~~~~il~~L~~~l~ 1388 (2256)
.++..+.|-.+...+........++....+..++. ..+.|.+-...+ ..++.++.... ..+.+.+.+.+.
T Consensus 71 ~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~---~~~nWd~~D~~a~~~~g~~~~~~p------~~~~~~l~~W~~ 141 (232)
T 3jxy_A 71 DLPEREFQAAALDIMQKYKKHINETHIPFLEELIV---TKSWWDSVDSIVPTFLGDIFLKHP------ELISAYIPKWIA 141 (232)
T ss_dssp TSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT---SSCCHHHHHHHTTTHHHHHHHHCG------GGGGGTHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc---cCCChHHHHHhhHHHHHHHHHHCH------HHHHHHHHHHhc
Confidence 45666677666555544333232323334443333 445788766553 45556555431 124556777888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh
Q 000098 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2256)
Q Consensus 1389 ~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~ 1452 (2256)
+++.|..|-+.... +..........+++.+...+.|++..|+.+..+++..+....+
T Consensus 142 s~~~w~rR~ai~~~-------l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 142 SDNIWLQRAAILFQ-------LKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp SSCHHHHHHHHHTT-------TTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CCchHHHHHHHHHH-------HHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH
Confidence 88667666544332 1111122234566677778999999999999999999876644
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=30.72 E-value=4.4e+02 Score=27.55 Aligned_cols=89 Identities=10% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcHhHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHH-HHHhcC---CCCHH
Q 000098 1680 QGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPA-ILDGLA---DENES 1752 (2256)
Q Consensus 1680 ~~L~~i~~~~g~~~l~~ll~~ll~~l~-~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~-Ll~~L~---d~~~~ 1752 (2256)
..+.+++..- ...-...+..+.+.++ +.++.+...++.++..+.+..|..|...+ ..++.. +...+. ++...
T Consensus 38 leicD~I~~~-~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~ 116 (157)
T 1elk_A 38 MEICDIINET-EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTI 116 (157)
T ss_dssp HHHHHHHHHS-SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHH
T ss_pred HHHHHHHhCC-CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHH
Confidence 3344444432 1234556667777787 47899999999999999999999886544 235554 455553 34568
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000098 1753 VRDAALGAGHVLVEHYA 1769 (2256)
Q Consensus 1753 VR~~Al~al~~iv~~~~ 1769 (2256)
||+.++..+......|.
T Consensus 117 Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 117 VHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88888777776665554
No 151
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=30.36 E-value=3.1e+02 Score=30.45 Aligned_cols=92 Identities=9% Similarity=-0.088 Sum_probs=62.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~ 1427 (2256)
+-+.|.+-...+.+++.++... +..+.+.+.+.+.+++.|..|-+.... +...-..+...+++.+..
T Consensus 100 ~~~nWd~~D~~a~~~~~~~~~~------~~~~~~~i~~W~~s~~~w~rR~ai~~~-------l~~~~~~~~~~~~~i~~~ 166 (220)
T 2b6c_A 100 QKAWWDSVDAWRKFFGSWVALH------LTELPTIFALFYGAENFWNRRVALNLQ-------LMLKEKTNQDLLKKAIIY 166 (220)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHS------GGGHHHHHHHHTTCSSHHHHHHHHHTT-------TTCGGGCCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHC------hHHHHHHHHHHHcCCCHHHHHHHHHHH-------HHHHHCCCHHHHHHHHHH
Confidence 3456888877666666666543 123667788888888666666443322 121113445667787777
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhh
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLS 1452 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~ 1452 (2256)
.++|++..||.+..+++..+...-+
T Consensus 167 ~~~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 167 DRTTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp TTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred hCCChHHHHHHHHHHHHHHHHhhCH
Confidence 8999999999999999999876644
No 152
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=29.40 E-value=16 Score=30.38 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=12.4
Q ss_pred cchhhhHhhhcChHHHHH
Q 000098 252 VLPASIKMLKRNPEIILE 269 (2256)
Q Consensus 252 ilP~leK~lLRsPE~~l~ 269 (2256)
||-.=.-+||||||++=.
T Consensus 20 VLNqKk~SLLRsPEVI~F 37 (62)
T 2kw3_C 20 VLNQKRLSLLRSPEVVQF 37 (62)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHH
Confidence 444445689999999643
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.11 E-value=2.6e+02 Score=31.38 Aligned_cols=91 Identities=11% Similarity=0.125 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcC-CCCHHHHH
Q 000098 1679 AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLA-DENESVRD 1755 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~-d~~~~VR~ 1755 (2256)
...+.+++..- ...-...+..|.+.+++.++.+...++.++..+.+..|..|...+ ..++..+...+. ..++.|++
T Consensus 29 ileicD~I~~~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~ 107 (226)
T 3zyq_A 29 ILQICDLIRQG-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRN 107 (226)
T ss_dssp HHHHHHHHHTT-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHH
Confidence 33445555431 122355667778888899999999999999999999998775433 233333333332 34678998
Q ss_pred HHHHHHHHHHHHhhc
Q 000098 1756 AALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1756 ~Al~al~~iv~~~~~ 1770 (2256)
.++..+......|..
T Consensus 108 kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 108 KILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCC
Confidence 888877777666654
No 154
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=23.85 E-value=1.1e+03 Score=29.11 Aligned_cols=247 Identities=12% Similarity=0.125 Sum_probs=118.7
Q ss_pred CCChhHHHHHHHHHHHHHhh--C-hhhHhhhhh-hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH-HhHHHH
Q 000098 1469 DKAWRTKQSSVQLLGAMAYC--A-PQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI-ASLVPT 1541 (2256)
Q Consensus 1469 ~~~w~~R~~a~~~Lg~la~~--~-p~~l~~~L~-~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i-~~lv~~ 1541 (2256)
+.+|-.-....+.|..+... . ++....+++ .++-.|+.++..++++-|......|.++-..+.+ +.+ +.+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677666666777666643 1 222233333 4677788889999999999888888777654432 233 333344
Q ss_pred HHhhhCCC--ChhHHHHHHHHHh--cccccCCChhhHhhHHHHHHHhhcCCCHHH-HHHHHHHHHHHhhhcCCCCcchhh
Q 000098 1542 LLMGLTDP--NDHTKYSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPY 1616 (2256)
Q Consensus 1542 Ll~~l~d~--~~~vr~al~~L~~--~~~~~~~~~~~l~~i~p~L~~~L~d~~~~v-R~~a~~~l~~L~~~l~~~~~l~~~ 1616 (2256)
+...+.+. ...+.+.++.++. ..|.....+.+...+..++..+.+.+.... -..-..++..+.+ .++.-
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~e--KDp~L---- 281 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE--KDSTL---- 281 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHH--HCGGG----
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHh--cCcHh----
Confidence 44444322 2344566666655 234433333333333333333333322111 1112223333333 22211
Q ss_pred hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc---CCCHHHHHHHHHH-----HHHHHHH
Q 000098 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS---DNSNVERSGAAQG-----LSEVLAA 1688 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~---~~~~~~R~~aa~~-----L~~i~~~ 1688 (2256)
...++.++....--.++.=......-+..+.+.+++..+..++..++..+.. .....+-..|..- +-.++..
T Consensus 282 ~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~ 361 (449)
T 2npp_B 282 TEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 361 (449)
T ss_dssp HHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh
Confidence 1223334433333333333334455566666666655555555555444332 2344444444321 1222222
Q ss_pred hcHhHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhHh
Q 000098 1689 LGTVYFEHILPDIIRNC-----SHQRASVRDGYLTLFKYLPR 1725 (2256)
Q Consensus 1689 ~g~~~l~~ll~~ll~~l-----~~~~~~vR~~al~~l~~La~ 1725 (2256)
....++|.+...+ ++-+..+|..+..++..+..
T Consensus 362 ----n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 362 ----NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp ----THHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred ----chhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 2334555554443 23367788877776654443
No 155
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=22.39 E-value=2.5e+02 Score=28.52 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=53.5
Q ss_pred chhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCC
Q 000098 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2106 ~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
+.+.+.+++|.|+++++|.++.+...++..+..+- ..+.|++.. .+...|. + =-.+.+..++..++
T Consensus 25 ~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~l~p~I~~-------vl~s~D~-~--W~ywil~~lv~~~~ 90 (134)
T 3ut4_A 25 IDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ----SIAMPHILT-------ILQGNDI-M--WKYWVIKLMIPYLI 90 (134)
T ss_dssp CHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH----HHHHHHHHH-------HHHSSCH-H--HHHHHHHHHGGGCC
T ss_pred CHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc----HhhHHHHHH-------HHHcCCh-H--HHHHHHHHHHHcCC
Confidence 55678899999999999999888777776665432 244444333 3333332 2 23456777777788
Q ss_pred CCchhchHHHHHHHHhh
Q 000098 2186 KEVQPSYIKVIRDAIST 2202 (2256)
Q Consensus 2186 ~e~l~~lv~~l~~~l~~ 2202 (2256)
.+....+.+.+.+....
T Consensus 91 ~~~~~~l~~eL~rl~~~ 107 (134)
T 3ut4_A 91 YPNKQLVKSELERLSSL 107 (134)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 76666666666655554
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.19 E-value=4e+02 Score=29.58 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLA-DENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1694 l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~-d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
-...+..|.+.+.+.++.+...++.++..+.+..|..|...+ ..++..+...+. ..++.||+.+++.+......|..
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 345566677788889999999999999999999888774432 123333333333 34678998888777776666653
Done!