Query 000099
Match_columns 2240
No_of_seqs 695 out of 3273
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 18:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 6E-161 1E-165 1494.7 60.0 960 703-1807 128-1127(1157)
2 KOG0385 Chromatin remodeling c 100.0 2E-107 4E-112 994.3 48.0 511 988-1560 155-670 (971)
3 KOG0384 Chromodomain-helicase 100.0 1.3E-98 3E-103 950.6 35.4 508 987-1559 357-887 (1373)
4 KOG0388 SNF2 family DNA-depend 100.0 4.3E-92 9.2E-97 846.3 43.8 465 987-1517 555-1182(1185)
5 KOG0391 SNF2 family DNA-depend 100.0 2.2E-92 4.7E-97 874.1 37.5 485 991-1534 607-1429(1958)
6 PLN03142 Probable chromatin-re 100.0 8.6E-87 1.9E-91 873.2 57.0 512 988-1564 158-673 (1033)
7 KOG0389 SNF2 family DNA-depend 100.0 6.3E-87 1.4E-91 818.4 42.0 473 989-1515 387-914 (941)
8 KOG0387 Transcription-coupled 100.0 3.4E-84 7.4E-89 795.8 42.4 469 991-1512 197-681 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 4.3E-81 9.3E-86 786.1 42.1 487 999-1530 974-1495(1549)
10 KOG0390 DNA repair protein, SN 100.0 1.2E-64 2.7E-69 640.6 43.7 466 998-1518 236-736 (776)
11 COG0553 HepA Superfamily II DN 100.0 4.2E-62 9E-67 642.8 40.6 470 996-1512 334-845 (866)
12 KOG1015 Transcription regulato 100.0 4.4E-62 9.5E-67 598.9 37.3 552 986-1590 655-1381(1567)
13 KOG1002 Nucleotide excision re 100.0 8.2E-61 1.8E-65 563.0 34.0 464 988-1512 173-772 (791)
14 KOG4439 RNA polymerase II tran 100.0 8.2E-59 1.8E-63 564.7 34.8 468 989-1513 315-882 (901)
15 KOG1016 Predicted DNA helicase 100.0 1.4E-51 3E-56 498.9 26.2 482 999-1536 253-892 (1387)
16 PRK04914 ATP-dependent helicas 100.0 1E-50 2.2E-55 532.5 33.6 411 999-1454 151-603 (956)
17 KOG1000 Chromatin remodeling p 100.0 7.5E-49 1.6E-53 464.4 32.8 418 1000-1509 198-623 (689)
18 KOG0383 Predicted helicase [Ge 100.0 6.7E-50 1.5E-54 503.8 7.4 388 990-1410 283-696 (696)
19 KOG0386 Chromatin remodeling c 100.0 1.1E-49 2.3E-54 499.6 -14.0 917 8-966 14-981 (1157)
20 KOG1001 Helicase-like transcri 100.0 4.4E-44 9.5E-49 456.7 23.8 443 1003-1509 135-670 (674)
21 PF00176 SNF2_N: SNF2 family N 100.0 8E-40 1.7E-44 380.6 23.1 280 1004-1310 1-298 (299)
22 TIGR00603 rad25 DNA repair hel 100.0 2.3E-35 5E-40 378.1 36.1 333 998-1454 253-605 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 7E-33 1.5E-37 365.3 37.0 431 999-1454 14-477 (773)
24 COG1111 MPH1 ERCC4-like helica 100.0 2.1E-28 4.5E-33 295.9 31.4 418 999-1454 14-479 (542)
25 PHA02558 uvsW UvsW helicase; P 100.0 4E-28 8.8E-33 306.5 34.7 336 998-1454 112-453 (501)
26 COG1061 SSL2 DNA or RNA helica 100.0 6.2E-28 1.3E-32 300.6 31.0 349 998-1453 34-389 (442)
27 KOG0298 DEAD box-containing he 99.9 1E-27 2.2E-32 308.6 17.2 275 1015-1310 370-690 (1394)
28 PTZ00110 helicase; Provisional 99.9 3.5E-26 7.5E-31 291.5 31.0 316 1000-1450 152-480 (545)
29 PRK11776 ATP-dependent RNA hel 99.9 1.1E-25 2.3E-30 281.5 32.8 311 1000-1450 26-345 (460)
30 KOG0331 ATP-dependent RNA heli 99.9 6.5E-26 1.4E-30 280.5 27.7 317 1000-1451 113-445 (519)
31 PRK11192 ATP-dependent RNA hel 99.9 4.1E-25 8.8E-30 274.2 33.8 313 1000-1451 23-349 (434)
32 PRK10590 ATP-dependent RNA hel 99.9 3.5E-25 7.6E-30 277.0 31.3 312 1000-1451 23-349 (456)
33 PRK04837 ATP-dependent RNA hel 99.9 2.4E-25 5.2E-30 275.7 29.5 312 1000-1450 30-358 (423)
34 TIGR00614 recQ_fam ATP-depende 99.9 5.7E-25 1.2E-29 276.1 31.7 308 999-1452 10-331 (470)
35 PRK04537 ATP-dependent RNA hel 99.9 6.1E-25 1.3E-29 281.4 32.2 312 1000-1450 31-360 (572)
36 PRK11634 ATP-dependent RNA hel 99.9 2E-24 4.4E-29 278.7 36.5 314 1000-1452 28-350 (629)
37 KOG0354 DEAD-box like helicase 99.9 4.7E-24 1E-28 270.4 38.1 419 999-1451 61-527 (746)
38 PRK01297 ATP-dependent RNA hel 99.9 2.5E-24 5.5E-29 270.4 34.3 313 1000-1450 109-438 (475)
39 KOG0330 ATP-dependent RNA heli 99.9 4.9E-25 1.1E-29 258.8 25.7 314 1000-1454 83-405 (476)
40 PLN00206 DEAD-box ATP-dependen 99.9 1.3E-24 2.8E-29 275.9 31.1 313 999-1450 142-471 (518)
41 PTZ00424 helicase 45; Provisio 99.9 1.1E-23 2.4E-28 257.8 30.9 313 1000-1450 50-370 (401)
42 COG0513 SrmB Superfamily II DN 99.9 9.6E-24 2.1E-28 267.4 29.3 315 1000-1450 51-376 (513)
43 PRK11057 ATP-dependent DNA hel 99.9 2.2E-23 4.8E-28 269.0 32.9 304 1000-1451 25-340 (607)
44 TIGR01389 recQ ATP-dependent D 99.9 2.9E-23 6.2E-28 267.4 30.4 304 999-1450 12-327 (591)
45 PLN03137 ATP-dependent DNA hel 99.9 1.5E-22 3.3E-27 265.8 30.6 308 999-1452 459-785 (1195)
46 PRK11448 hsdR type I restricti 99.9 1.2E-22 2.5E-27 273.8 30.4 361 999-1459 412-821 (1123)
47 KOG0346 RNA helicase [RNA proc 99.9 8.8E-23 1.9E-27 242.2 24.3 273 1328-1643 253-568 (569)
48 TIGR00643 recG ATP-dependent D 99.9 8.2E-22 1.8E-26 255.5 34.0 307 999-1451 234-563 (630)
49 PRK10917 ATP-dependent DNA hel 99.9 1.4E-21 3E-26 255.2 31.7 306 999-1451 260-586 (681)
50 TIGR03817 DECH_helic helicase/ 99.9 2.8E-21 6E-26 253.9 33.5 318 1000-1449 36-381 (742)
51 TIGR00580 mfd transcription-re 99.9 2.1E-21 4.5E-26 258.0 32.6 305 999-1451 450-767 (926)
52 cd05515 Bromo_polybromo_V Brom 99.9 2.9E-23 6.4E-28 212.7 10.5 104 1939-2043 1-104 (105)
53 PRK13767 ATP-dependent helicas 99.9 4.1E-21 9E-26 256.4 33.4 326 999-1451 31-395 (876)
54 PRK10689 transcription-repair 99.9 3.3E-21 7.2E-26 260.7 32.0 307 999-1451 599-916 (1147)
55 cd05525 Bromo_ASH1 Bromodomain 99.9 6.6E-23 1.4E-27 210.5 11.3 103 1938-2041 2-104 (106)
56 cd05524 Bromo_polybromo_I Brom 99.9 7.9E-23 1.7E-27 212.1 11.0 107 1940-2047 4-110 (113)
57 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.2E-22 2.6E-27 208.9 11.2 105 1939-2044 2-106 (107)
58 cd05517 Bromo_polybromo_II Bro 99.9 1.1E-22 2.3E-27 208.0 10.6 101 1940-2041 2-102 (103)
59 cd05518 Bromo_polybromo_IV Bro 99.9 1.3E-22 2.8E-27 207.3 10.2 101 1940-2041 2-102 (103)
60 KOG1123 RNA polymerase II tran 99.9 1.2E-21 2.7E-26 234.0 18.3 332 999-1454 301-651 (776)
61 KOG0338 ATP-dependent RNA heli 99.9 8.3E-21 1.8E-25 228.2 25.1 309 1000-1445 203-524 (691)
62 KOG0350 DEAD-box ATP-dependent 99.9 1.4E-21 3.1E-26 234.9 16.5 346 1000-1448 159-534 (620)
63 KOG0345 ATP-dependent RNA heli 99.9 4.3E-20 9.4E-25 221.4 27.2 318 999-1452 27-362 (567)
64 KOG0343 RNA Helicase [RNA proc 99.9 2.5E-20 5.5E-25 225.5 25.3 313 1000-1452 91-420 (758)
65 KOG0340 ATP-dependent RNA heli 99.9 5.2E-20 1.1E-24 215.1 26.0 314 1000-1448 29-355 (442)
66 KOG0333 U5 snRNP-like RNA heli 99.9 1.7E-20 3.6E-25 226.6 22.5 342 1000-1452 267-622 (673)
67 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 1.1E-21 2.4E-26 201.5 10.2 102 1939-2043 2-103 (106)
68 PRK02362 ski2-like helicase; P 99.9 1.4E-19 3E-24 238.7 32.6 316 1000-1452 23-393 (737)
69 cd05519 Bromo_SNF2 Bromodomain 99.9 1.4E-21 3.1E-26 199.6 10.5 102 1939-2041 1-102 (103)
70 KOG0342 ATP-dependent RNA heli 99.8 4.7E-20 1E-24 222.7 23.5 314 1000-1448 104-431 (543)
71 KOG0335 ATP-dependent RNA heli 99.8 5E-20 1.1E-24 225.7 21.4 313 1000-1452 96-442 (482)
72 cd05520 Bromo_polybromo_III Br 99.8 3.9E-21 8.4E-26 196.6 9.8 98 1943-2041 5-102 (103)
73 PRK01172 ski2-like helicase; P 99.8 9.8E-19 2.1E-23 228.8 32.7 304 999-1446 21-368 (674)
74 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.2E-20 2.5E-25 193.4 10.8 102 1939-2041 2-103 (104)
75 TIGR01587 cas3_core CRISPR-ass 99.8 5.8E-19 1.3E-23 213.8 26.7 296 1022-1452 2-334 (358)
76 TIGR03714 secA2 accessory Sec 99.8 6.2E-18 1.3E-22 218.8 37.0 415 1000-1461 68-542 (762)
77 KOG0348 ATP-dependent RNA heli 99.8 9.1E-19 2E-23 211.9 27.1 121 1329-1452 408-552 (708)
78 KOG0328 Predicted ATP-dependen 99.8 1.2E-19 2.5E-24 206.7 17.7 305 1003-1447 52-366 (400)
79 PRK00254 ski2-like helicase; P 99.8 2.4E-18 5.2E-23 226.6 32.0 314 1000-1452 23-384 (720)
80 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.4E-18 3E-23 226.5 28.5 101 1342-1447 270-383 (844)
81 COG4096 HsdR Type I site-speci 99.8 1.7E-18 3.6E-23 219.7 26.9 357 996-1454 161-546 (875)
82 PRK12898 secA preprotein trans 99.8 6E-17 1.3E-21 207.7 37.8 413 998-1460 101-590 (656)
83 cd05502 Bromo_tif1_like Bromod 99.8 2.1E-19 4.5E-24 185.5 11.8 106 1935-2048 1-109 (109)
84 KOG0341 DEAD-box protein abstr 99.8 3.4E-19 7.4E-24 208.5 14.1 311 1000-1450 192-524 (610)
85 COG0514 RecQ Superfamily II DN 99.8 1.3E-17 2.8E-22 210.5 26.7 307 1000-1452 17-335 (590)
86 PRK09200 preprotein translocas 99.8 1.4E-16 2.9E-21 208.1 36.5 408 1000-1461 78-546 (790)
87 TIGR00348 hsdR type I site-spe 99.8 3.5E-17 7.6E-22 213.7 31.1 372 999-1459 237-654 (667)
88 PRK09751 putative ATP-dependen 99.8 3.8E-17 8.2E-22 223.1 32.0 96 1343-1441 243-371 (1490)
89 KOG0339 ATP-dependent RNA heli 99.8 8.9E-18 1.9E-22 202.0 22.5 315 1001-1454 246-573 (731)
90 cd05496 Bromo_WDR9_II Bromodom 99.8 5.4E-19 1.2E-23 185.1 10.3 109 1937-2054 4-113 (119)
91 cd05505 Bromo_WSTF_like Bromod 99.8 5.1E-19 1.1E-23 179.3 9.1 95 1941-2042 3-97 (97)
92 KOG0326 ATP-dependent RNA heli 99.8 7.1E-19 1.5E-23 202.8 11.3 315 1001-1459 108-432 (459)
93 PRK09401 reverse gyrase; Revie 99.8 4.4E-17 9.6E-22 221.5 30.3 295 998-1442 78-432 (1176)
94 cd05504 Bromo_Acf1_like Bromod 99.8 1.5E-18 3.2E-23 180.9 11.1 105 1933-2045 8-112 (115)
95 KOG0336 ATP-dependent RNA heli 99.8 1E-17 2.2E-22 197.4 19.2 311 1000-1448 242-566 (629)
96 cd05526 Bromo_polybromo_VI Bro 99.8 3E-18 6.5E-23 176.5 11.8 107 1937-2046 2-108 (110)
97 COG1200 RecG RecG-like helicas 99.8 1.8E-16 4E-21 199.9 29.6 307 1000-1452 262-589 (677)
98 COG1201 Lhr Lhr-like helicases 99.8 1.5E-16 3.3E-21 206.8 29.8 318 999-1452 21-360 (814)
99 smart00297 BROMO bromo domain. 99.8 2.5E-18 5.3E-23 175.3 10.5 102 1940-2044 5-106 (107)
100 TIGR00963 secA preprotein tran 99.8 7.3E-17 1.6E-21 207.9 26.4 156 1298-1460 354-521 (745)
101 KOG4284 DEAD box protein [Tran 99.8 7.6E-18 1.6E-22 206.3 16.4 313 1001-1446 48-371 (980)
102 cd05499 Bromo_BDF1_2_II Bromod 99.8 2E-18 4.3E-23 176.2 9.5 98 1941-2042 3-102 (102)
103 cd05501 Bromo_SP100C_like Brom 99.7 4.7E-18 1E-22 173.3 10.3 96 1941-2046 5-100 (102)
104 cd05498 Bromo_Brdt_II_like Bro 99.7 3.7E-18 7.9E-23 174.1 9.5 99 1940-2042 2-102 (102)
105 cd05495 Bromo_cbp_like Bromodo 99.7 5.9E-18 1.3E-22 174.7 10.9 104 1936-2045 1-106 (108)
106 KOG0347 RNA helicase [RNA proc 99.7 6.2E-17 1.4E-21 196.7 21.3 334 1000-1450 203-565 (731)
107 cd05510 Bromo_SPT7_like Bromod 99.7 7.1E-18 1.5E-22 175.1 10.8 106 1936-2048 5-111 (112)
108 cd05503 Bromo_BAZ2A_B_like Bro 99.7 5.1E-18 1.1E-22 172.0 9.4 95 1941-2042 3-97 (97)
109 PHA02653 RNA helicase NPH-II; 99.7 6.5E-16 1.4E-20 200.5 30.5 324 992-1454 152-512 (675)
110 cd05497 Bromo_Brdt_I_like Brom 99.7 8.6E-18 1.9E-22 173.2 10.5 101 1937-2044 4-106 (107)
111 KOG1474 Transcription initiati 99.7 3.7E-17 8E-22 211.7 18.0 112 1932-2050 216-329 (640)
112 cd05509 Bromo_gcn5_like Bromod 99.7 1.3E-17 2.8E-22 169.9 10.4 99 1939-2044 2-100 (101)
113 cd05507 Bromo_brd8_like Bromod 99.7 1.5E-17 3.2E-22 170.7 10.6 100 1938-2044 3-102 (104)
114 TIGR03158 cas3_cyano CRISPR-as 99.7 1.7E-15 3.7E-20 185.2 27.5 85 1343-1439 271-357 (357)
115 KOG0332 ATP-dependent RNA heli 99.7 2.5E-16 5.3E-21 185.5 18.3 305 1002-1447 114-436 (477)
116 cd05500 Bromo_BDF1_2_I Bromodo 99.7 5.4E-17 1.2E-21 166.1 10.4 101 1935-2042 1-103 (103)
117 cd05529 Bromo_WDR9_I_like Brom 99.7 6.3E-17 1.4E-21 171.7 10.9 105 1935-2043 21-126 (128)
118 TIGR01054 rgy reverse gyrase. 99.7 3.1E-15 6.8E-20 204.0 29.0 313 998-1427 76-410 (1171)
119 cd05508 Bromo_RACK7 Bromodomai 99.7 6.2E-17 1.3E-21 164.8 9.4 97 1938-2042 3-99 (99)
120 cd05528 Bromo_AAA Bromodomain; 99.7 9.2E-17 2E-21 166.9 10.6 102 1939-2047 4-109 (112)
121 cd05511 Bromo_TFIID Bromodomai 99.7 8.2E-17 1.8E-21 167.2 9.9 96 1943-2045 5-100 (112)
122 PRK05580 primosome assembly pr 99.7 3E-15 6.4E-20 196.1 26.2 372 999-1452 143-547 (679)
123 TIGR01970 DEAH_box_HrpB ATP-de 99.7 1E-14 2.2E-19 193.2 31.1 105 1344-1454 209-334 (819)
124 COG1205 Distinct helicase fami 99.7 6.2E-15 1.3E-19 195.9 29.0 317 1000-1449 70-417 (851)
125 cd05506 Bromo_plant1 Bromodoma 99.7 9.8E-17 2.1E-21 162.8 8.8 96 1940-2042 2-99 (99)
126 cd05512 Bromo_brd1_like Bromod 99.7 1.2E-16 2.7E-21 162.3 9.1 91 1940-2037 3-93 (98)
127 cd05513 Bromo_brd7_like Bromod 99.7 1.8E-16 4E-21 161.1 8.9 92 1939-2037 2-93 (98)
128 KOG0334 RNA helicase [RNA proc 99.7 2.4E-15 5.1E-20 195.1 20.8 314 999-1450 386-716 (997)
129 PF04851 ResIII: Type III rest 99.7 8E-16 1.7E-20 166.8 13.9 154 1000-1161 3-183 (184)
130 PRK14701 reverse gyrase; Provi 99.7 3.3E-15 7.1E-20 207.4 23.0 342 998-1447 77-449 (1638)
131 TIGR00595 priA primosomal prot 99.6 1.2E-14 2.6E-19 184.8 25.4 93 1357-1452 271-379 (505)
132 PRK11664 ATP-dependent RNA hel 99.6 3.4E-14 7.3E-19 188.5 30.0 106 1343-1454 211-337 (812)
133 cd04369 Bromodomain Bromodomai 99.6 4.8E-16 1E-20 153.8 9.4 97 1940-2041 2-98 (99)
134 PRK13104 secA preprotein trans 99.6 1.6E-13 3.4E-18 179.6 34.6 416 1000-1461 82-592 (896)
135 KOG0344 ATP-dependent RNA heli 99.6 6.5E-15 1.4E-19 182.2 20.3 321 1000-1452 158-493 (593)
136 COG1204 Superfamily II helicas 99.6 1E-14 2.2E-19 191.7 23.5 309 1000-1444 31-396 (766)
137 cd00079 HELICc Helicase superf 99.6 1.5E-15 3.2E-20 156.3 12.2 120 1328-1450 12-131 (131)
138 PRK09694 helicase Cas3; Provis 99.6 1.8E-13 3.8E-18 181.9 32.9 109 1332-1444 549-665 (878)
139 COG5076 Transcription factor i 99.6 9.1E-16 2E-20 188.4 9.1 109 1940-2049 144-252 (371)
140 PRK12906 secA preprotein trans 99.6 9.5E-13 2.1E-17 171.8 35.0 423 998-1461 78-558 (796)
141 PRK12904 preprotein translocas 99.6 1.3E-12 2.8E-17 171.0 36.2 412 998-1461 79-578 (830)
142 KOG0327 Translation initiation 99.6 1.3E-14 2.9E-19 172.8 15.0 306 1001-1447 49-363 (397)
143 PF00439 Bromodomain: Bromodom 99.6 4.4E-15 9.6E-20 145.2 8.8 84 1943-2033 1-84 (84)
144 COG4889 Predicted helicase [Ge 99.5 2.2E-14 4.8E-19 179.8 13.0 157 999-1160 160-350 (1518)
145 COG1197 Mfd Transcription-repa 99.5 7.6E-13 1.6E-17 175.0 27.6 307 999-1453 593-910 (1139)
146 smart00487 DEXDc DEAD-like hel 99.5 1.4E-13 3.1E-18 148.6 17.2 166 998-1170 6-180 (201)
147 TIGR00631 uvrb excinuclease AB 99.5 4E-13 8.7E-18 175.0 23.6 118 1326-1447 424-546 (655)
148 cd05492 Bromo_ZMYND11 Bromodom 99.5 3E-14 6.4E-19 147.4 10.1 96 1946-2042 8-103 (109)
149 COG4098 comFA Superfamily II D 99.5 3.2E-12 7E-17 150.3 27.5 310 996-1452 93-414 (441)
150 KOG0337 ATP-dependent RNA heli 99.5 1.8E-13 4E-18 163.5 15.4 320 979-1446 30-360 (529)
151 PRK13107 preprotein translocas 99.5 1.6E-11 3.5E-16 160.8 33.9 420 1000-1461 82-596 (908)
152 cd00046 DEXDc DEAD-like helica 99.5 3.7E-13 8E-18 137.1 14.4 136 1021-1160 2-144 (144)
153 PRK11131 ATP-dependent RNA hel 99.5 1.8E-12 3.8E-17 175.7 24.4 104 1343-1454 285-409 (1294)
154 KOG0351 ATP-dependent DNA heli 99.5 1.5E-12 3.2E-17 173.0 21.6 311 999-1454 263-592 (941)
155 PF00271 Helicase_C: Helicase 99.5 1.3E-13 2.9E-18 132.4 8.1 78 1362-1442 1-78 (78)
156 COG1202 Superfamily II helicas 99.4 3E-12 6.6E-17 157.1 20.7 312 1000-1454 216-551 (830)
157 PRK05298 excinuclease ABC subu 99.4 5.3E-12 1.1E-16 165.3 24.5 113 1326-1441 428-545 (652)
158 PRK12900 secA preprotein trans 99.4 1.4E-10 2.9E-15 152.8 37.0 128 1327-1461 581-716 (1025)
159 TIGR01967 DEAH_box_HrpA ATP-de 99.4 5.4E-12 1.2E-16 171.6 23.9 104 1343-1454 278-402 (1283)
160 PRK12899 secA preprotein trans 99.4 2E-10 4.3E-15 151.0 36.7 157 1298-1461 517-686 (970)
161 KOG0952 DNA/RNA helicase MER3/ 99.4 4E-11 8.8E-16 155.2 26.2 300 1014-1446 121-481 (1230)
162 KOG0352 ATP-dependent DNA heli 99.4 4.1E-11 9E-16 143.3 24.1 322 1003-1452 23-360 (641)
163 PF00270 DEAD: DEAD/DEAH box h 99.3 2E-11 4.3E-16 131.8 15.8 156 1003-1166 2-167 (169)
164 smart00490 HELICc helicase sup 99.3 3.5E-12 7.5E-17 121.0 8.5 81 1359-1442 2-82 (82)
165 cd00268 DEADc DEAD-box helicas 99.3 4E-11 8.7E-16 134.2 16.9 155 1000-1161 21-185 (203)
166 COG1203 CRISPR-associated heli 99.3 7.1E-10 1.5E-14 147.3 29.9 327 999-1452 194-548 (733)
167 KOG0353 ATP-dependent DNA heli 99.3 1.9E-10 4E-15 135.5 20.0 313 999-1454 93-467 (695)
168 PRK12326 preprotein translocas 99.2 1E-08 2.2E-13 132.6 35.4 416 998-1462 76-553 (764)
169 KOG1245 Chromatin remodeling c 99.2 1.6E-11 3.4E-16 168.5 7.5 98 1943-2048 1306-1403(1404)
170 TIGR01407 dinG_rel DnaQ family 99.1 4.4E-09 9.5E-14 142.1 26.6 85 998-1085 243-333 (850)
171 KOG1827 Chromatin remodeling c 99.1 8.8E-11 1.9E-15 148.8 9.3 119 1937-2056 51-175 (629)
172 PRK13103 secA preprotein trans 99.1 4E-08 8.6E-13 129.8 32.2 156 1299-1461 399-596 (913)
173 KOG0951 RNA helicase BRR2, DEA 99.1 5.6E-09 1.2E-13 137.0 21.6 173 1000-1181 309-503 (1674)
174 KOG0329 ATP-dependent RNA heli 99.1 2.8E-09 6E-14 121.7 16.5 126 1001-1135 65-198 (387)
175 KOG0947 Cytoplasmic exosomal R 99.1 3.9E-08 8.4E-13 127.1 28.5 155 997-1192 294-456 (1248)
176 COG0556 UvrB Helicase subunit 99.0 4.8E-08 1E-12 121.0 26.5 102 1338-1442 440-546 (663)
177 COG1110 Reverse gyrase [DNA re 99.0 3.4E-08 7.3E-13 129.1 26.4 129 998-1135 80-216 (1187)
178 PRK12903 secA preprotein trans 99.0 2.6E-07 5.6E-12 121.4 34.4 406 998-1461 76-544 (925)
179 cd05517 Bromo_polybromo_II Bro 99.0 2.2E-11 4.8E-16 125.3 -2.3 83 1706-1800 3-96 (103)
180 KOG1472 Histone acetyltransfer 99.0 2.6E-10 5.6E-15 146.5 6.3 102 1939-2047 607-708 (720)
181 COG0610 Type I site-specific r 99.0 1.1E-08 2.4E-13 138.9 21.8 161 1000-1167 244-420 (962)
182 KOG0349 Putative DEAD-box RNA 99.0 1.5E-09 3.3E-14 130.0 10.9 97 1343-1442 504-603 (725)
183 cd05525 Bromo_ASH1 Bromodomain 98.9 7.6E-11 1.7E-15 122.0 -2.1 87 1707-1805 6-104 (106)
184 COG5076 Transcription factor i 98.9 1.6E-10 3.5E-15 142.6 -1.3 192 1726-2043 159-361 (371)
185 KOG1513 Nuclear helicase MOP-3 98.9 2.7E-08 5.8E-13 125.8 16.4 245 992-1263 257-537 (1300)
186 COG4581 Superfamily II RNA hel 98.9 4E-08 8.6E-13 131.3 18.9 159 997-1192 116-282 (1041)
187 cd05516 Bromo_SNF2L2 Bromodoma 98.9 1.7E-10 3.6E-15 119.6 -3.1 84 1707-1802 5-99 (107)
188 cd05520 Bromo_polybromo_III Br 98.8 3.2E-10 6.9E-15 116.9 -1.7 79 1712-1801 8-97 (103)
189 PF11496 HDA2-3: Class II hist 98.8 5.8E-08 1.3E-12 116.8 17.1 208 1244-1454 4-243 (297)
190 cd05515 Bromo_polybromo_V Brom 98.8 4.1E-10 9E-15 116.3 -2.1 84 1712-1806 8-103 (105)
191 cd05518 Bromo_polybromo_IV Bro 98.8 5.6E-10 1.2E-14 115.0 -2.0 84 1712-1806 8-102 (103)
192 PRK08074 bifunctional ATP-depe 98.7 3.1E-06 6.6E-11 115.9 31.4 95 1332-1429 739-839 (928)
193 cd05526 Bromo_polybromo_VI Bro 98.7 6.5E-10 1.4E-14 115.5 -3.0 83 1712-1807 11-104 (110)
194 COG1198 PriA Primosomal protei 98.7 1.1E-06 2.4E-11 115.6 25.6 151 1000-1160 198-359 (730)
195 TIGR03117 cas_csf4 CRISPR-asso 98.7 1.7E-06 3.6E-11 113.1 25.8 79 1005-1084 2-86 (636)
196 PF13872 AAA_34: P-loop contai 98.7 1.8E-07 3.9E-12 111.8 15.3 232 997-1262 34-302 (303)
197 CHL00122 secA preprotein trans 98.7 1.3E-05 2.9E-10 106.3 33.5 367 998-1414 74-491 (870)
198 TIGR00604 rad3 DNA repair heli 98.7 1.4E-06 3.1E-11 116.1 24.9 76 996-1071 6-82 (705)
199 PRK07246 bifunctional ATP-depe 98.7 2.1E-06 4.6E-11 115.8 25.8 89 1332-1426 635-725 (820)
200 COG1199 DinG Rad3-related DNA 98.7 4.1E-06 8.9E-11 110.8 28.0 105 1341-1450 476-613 (654)
201 cd05519 Bromo_SNF2 Bromodomain 98.6 2.1E-09 4.7E-14 110.6 -2.5 81 1708-1800 5-96 (103)
202 PRK12901 secA preprotein trans 98.6 4.8E-05 1E-09 102.0 36.5 130 1325-1461 609-746 (1112)
203 cd05524 Bromo_polybromo_I Brom 98.6 2E-09 4.4E-14 112.6 -3.1 78 1712-1800 10-98 (113)
204 PRK12902 secA preprotein trans 98.6 3.6E-05 7.9E-10 102.2 33.6 365 998-1414 83-506 (939)
205 KOG0949 Predicted helicase, DE 98.6 7.8E-06 1.7E-10 106.7 26.0 162 1000-1173 511-682 (1330)
206 cd05522 Bromo_Rsc1_2_II Bromod 98.5 8.3E-09 1.8E-13 106.6 -1.6 78 1712-1800 9-97 (104)
207 cd05521 Bromo_Rsc1_2_I Bromodo 98.5 8.2E-09 1.8E-13 107.1 -2.4 76 1712-1800 9-95 (106)
208 TIGR00596 rad1 DNA repair prot 98.5 1.8E-06 4E-11 115.4 17.8 78 1099-1177 6-91 (814)
209 PRK11747 dinG ATP-dependent DN 98.5 6.6E-05 1.4E-09 100.3 31.5 90 1330-1426 520-616 (697)
210 KOG0948 Nuclear exosomal RNA h 98.4 2.5E-06 5.3E-11 108.9 13.3 140 999-1159 128-275 (1041)
211 COG1643 HrpA HrpA-like helicas 98.3 4.4E-05 9.5E-10 102.4 23.8 105 1344-1454 259-385 (845)
212 PF02399 Herpes_ori_bp: Origin 98.3 3.3E-05 7.2E-10 101.7 21.4 112 1330-1452 269-386 (824)
213 KOG0920 ATP-dependent RNA heli 98.3 5.3E-05 1.1E-09 101.5 23.4 120 1329-1454 396-542 (924)
214 KOG0950 DNA polymerase theta/e 98.3 1.7E-05 3.6E-10 104.5 18.2 154 1000-1164 223-391 (1008)
215 PRK15483 type III restriction- 98.2 7E-06 1.5E-10 110.3 14.3 171 1020-1197 60-279 (986)
216 cd05491 Bromo_TBP7_like Bromod 98.2 9.7E-07 2.1E-11 92.7 4.1 41 1984-2024 63-103 (119)
217 KOG0922 DEAH-box RNA helicase 98.1 0.00025 5.5E-09 91.4 23.7 106 1346-1454 260-388 (674)
218 PF07652 Flavi_DEAD: Flaviviru 98.1 2.4E-05 5.2E-10 85.4 11.4 126 1021-1160 6-136 (148)
219 TIGR02562 cas3_yersinia CRISPR 98.1 0.0017 3.8E-08 88.1 30.3 47 1396-1445 837-883 (1110)
220 KOG0923 mRNA splicing factor A 98.0 0.0038 8.3E-08 80.3 31.3 101 1346-1451 475-604 (902)
221 smart00489 DEXDc3 DEAD-like he 98.0 7E-05 1.5E-09 90.4 14.2 73 1000-1072 8-84 (289)
222 smart00488 DEXDc2 DEAD-like he 98.0 7E-05 1.5E-09 90.4 14.2 73 1000-1072 8-84 (289)
223 cd05508 Bromo_RACK7 Bromodomai 97.9 1.1E-06 2.4E-11 90.4 -1.5 58 1730-1788 17-85 (99)
224 cd05505 Bromo_WSTF_like Bromod 97.9 1.5E-06 3.2E-11 89.1 -0.8 56 1732-1788 17-83 (97)
225 KOG1828 IRF-2-binding protein 97.9 1.9E-05 4.1E-10 95.6 7.8 76 1954-2036 223-298 (418)
226 COG3587 Restriction endonuclea 97.9 0.00011 2.5E-09 95.9 15.0 166 1014-1195 69-268 (985)
227 cd05496 Bromo_WDR9_II Bromodom 97.9 1.3E-06 2.9E-11 92.5 -2.4 63 1732-1800 22-96 (119)
228 cd05497 Bromo_Brdt_I_like Brom 97.9 1.7E-06 3.6E-11 90.2 -2.0 66 1729-1800 19-97 (107)
229 PF13086 AAA_11: AAA domain; P 97.9 0.00011 2.4E-09 83.0 12.3 68 1000-1071 1-75 (236)
230 PRK14873 primosome assembly pr 97.8 0.00024 5.3E-09 94.2 16.8 123 1029-1160 170-303 (665)
231 KOG0008 Transcription initiati 97.8 4.8E-06 1E-10 111.2 0.7 83 1962-2045 1400-1482(1563)
232 cd05512 Bromo_brd1_like Bromod 97.8 2.7E-06 5.8E-11 87.5 -1.6 58 1730-1788 16-84 (98)
233 KOG0924 mRNA splicing factor A 97.8 0.00094 2E-08 85.5 19.6 81 1368-1454 597-695 (1042)
234 COG0653 SecA Preprotein transl 97.8 0.0057 1.2E-07 81.9 27.4 130 1325-1461 410-550 (822)
235 cd05503 Bromo_BAZ2A_B_like Bro 97.8 3E-06 6.5E-11 86.7 -2.1 64 1731-1800 16-90 (97)
236 cd05507 Bromo_brd8_like Bromod 97.7 3.7E-06 8.1E-11 87.2 -1.7 58 1730-1788 18-86 (104)
237 cd05499 Bromo_BDF1_2_II Bromod 97.7 4.5E-06 9.7E-11 86.1 -1.9 66 1729-1800 17-95 (102)
238 cd05513 Bromo_brd7_like Bromod 97.7 5.4E-06 1.2E-10 85.3 -1.4 57 1731-1788 17-84 (98)
239 cd05528 Bromo_AAA Bromodomain; 97.7 5.7E-06 1.2E-10 87.0 -1.6 63 1732-1800 20-97 (112)
240 KOG0926 DEAH-box RNA helicase 97.6 0.00029 6.2E-09 91.2 12.5 150 1012-1174 264-438 (1172)
241 cd05504 Bromo_Acf1_like Bromod 97.6 5.1E-06 1.1E-10 87.7 -2.4 63 1732-1800 29-102 (115)
242 cd05509 Bromo_gcn5_like Bromod 97.6 5.1E-06 1.1E-10 85.4 -2.4 63 1732-1800 18-91 (101)
243 smart00297 BROMO bromo domain. 97.6 6.3E-06 1.4E-10 84.6 -1.8 69 1712-1788 11-90 (107)
244 cd05510 Bromo_SPT7_like Bromod 97.6 9.4E-06 2E-10 85.4 -0.7 50 1732-1782 25-75 (112)
245 cd05495 Bromo_cbp_like Bromodo 97.6 7.8E-06 1.7E-10 85.4 -1.4 64 1731-1800 20-96 (108)
246 KOG0953 Mitochondrial RNA heli 97.6 0.00018 4E-09 90.5 10.1 108 1341-1452 355-475 (700)
247 cd05498 Bromo_Brdt_II_like Bro 97.6 7.3E-06 1.6E-10 84.4 -1.8 67 1728-1800 16-95 (102)
248 cd05511 Bromo_TFIID Bromodomai 97.6 1.3E-05 2.8E-10 84.3 -0.7 57 1731-1788 16-83 (112)
249 KOG0955 PHD finger protein BR1 97.5 0.00011 2.4E-09 99.6 6.7 98 1940-2044 567-664 (1051)
250 cd05494 Bromodomain_1 Bromodom 97.5 4.7E-05 1E-09 80.5 1.9 78 1942-2023 4-90 (114)
251 cd05502 Bromo_tif1_like Bromod 97.4 1.7E-05 3.7E-10 82.9 -2.3 63 1731-1800 20-96 (109)
252 cd05506 Bromo_plant1 Bromodoma 97.4 2.3E-05 4.9E-10 80.4 -1.8 62 1733-1800 18-92 (99)
253 KOG1827 Chromatin remodeling c 97.4 1.1E-05 2.4E-10 103.6 -4.9 236 1726-2067 69-322 (629)
254 cd05529 Bromo_WDR9_I_like Brom 97.4 2.9E-05 6.3E-10 83.5 -1.2 60 1728-1788 40-111 (128)
255 PF00439 Bromodomain: Bromodom 97.4 2.7E-05 5.8E-10 76.7 -1.4 58 1730-1788 11-79 (84)
256 PF13871 Helicase_C_4: Helicas 97.3 0.00029 6.4E-09 84.5 5.9 76 1385-1463 52-138 (278)
257 cd04369 Bromodomain Bromodomai 97.3 3E-05 6.6E-10 77.1 -2.0 58 1730-1788 17-85 (99)
258 PF08880 QLQ: QLQ; InterPro: 97.2 0.00024 5.3E-09 61.2 3.3 34 473-507 2-35 (37)
259 cd05500 Bromo_BDF1_2_I Bromodo 97.2 3.8E-05 8.2E-10 79.6 -2.0 64 1731-1800 20-96 (103)
260 cd05492 Bromo_ZMYND11 Bromodom 97.2 7.6E-05 1.7E-09 78.3 -0.5 45 1737-1782 29-73 (109)
261 KOG1472 Histone acetyltransfer 97.1 0.00025 5.4E-09 92.9 3.0 93 1959-2052 301-393 (720)
262 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.0054 1.2E-07 73.7 13.9 120 998-1134 75-209 (266)
263 PRK10536 hypothetical protein; 97.0 0.0015 3.2E-08 77.9 7.8 144 1001-1165 60-217 (262)
264 cd05501 Bromo_SP100C_like Brom 96.9 0.00021 4.4E-09 74.4 -0.3 47 1733-1782 20-67 (102)
265 PF02562 PhoH: PhoH-like prote 96.9 0.0033 7.2E-08 72.9 8.9 144 1001-1166 5-161 (205)
266 KOG4150 Predicted ATP-dependen 96.6 0.0085 1.8E-07 75.7 10.2 116 1326-1444 507-630 (1034)
267 PF09848 DUF2075: Uncharacteri 96.6 0.0074 1.6E-07 74.9 9.7 91 1022-1136 4-97 (352)
268 PF07529 HSA: HSA; InterPro: 96.6 0.0085 1.8E-07 58.3 8.0 63 808-870 11-73 (73)
269 PF13604 AAA_30: AAA domain; P 96.3 0.036 7.9E-07 63.7 12.7 125 1000-1162 1-132 (196)
270 PF13401 AAA_22: AAA domain; P 96.3 0.0084 1.8E-07 62.9 6.9 115 1019-1160 4-125 (131)
271 smart00573 HSA domain in helic 96.3 0.013 2.8E-07 57.7 7.6 61 810-870 13-73 (73)
272 COG0553 HepA Superfamily II DN 96.3 0.0029 6.2E-08 85.9 4.2 179 1000-1182 84-289 (866)
273 PF13307 Helicase_C_2: Helicas 96.2 0.011 2.4E-07 66.1 7.4 101 1340-1447 5-143 (167)
274 TIGR00376 DNA helicase, putati 96.0 0.05 1.1E-06 72.8 13.6 67 999-1071 156-223 (637)
275 cd00009 AAA The AAA+ (ATPases 96.0 0.064 1.4E-06 55.5 11.5 117 1008-1162 6-131 (151)
276 KOG0925 mRNA splicing factor A 96.0 1 2.3E-05 57.5 23.3 104 1345-1454 254-385 (699)
277 KOG1803 DNA helicase [Replicat 96.0 0.033 7.2E-07 72.1 11.0 151 999-1162 184-393 (649)
278 KOG1802 RNA helicase nonsense 95.9 0.039 8.5E-07 71.5 11.1 133 1000-1142 410-588 (935)
279 KOG1132 Helicase of the DEAD s 95.7 0.055 1.2E-06 72.4 11.4 47 992-1039 14-60 (945)
280 KOG1828 IRF-2-binding protein 95.7 0.0019 4.2E-08 78.9 -1.5 66 1973-2039 48-113 (418)
281 KOG0008 Transcription initiati 95.6 0.011 2.3E-07 80.9 4.7 80 1963-2043 1280-1359(1563)
282 KOG1474 Transcription initiati 95.5 0.0047 1E-07 82.3 0.9 88 1959-2047 7-96 (640)
283 PF12340 DUF3638: Protein of u 95.4 0.067 1.4E-06 63.2 9.7 113 998-1113 21-143 (229)
284 TIGR01447 recD exodeoxyribonuc 95.3 0.11 2.3E-06 69.2 12.5 139 1003-1162 148-297 (586)
285 KOG1131 RNA polymerase II tran 95.2 0.14 3E-06 65.3 12.1 67 992-1058 8-74 (755)
286 TIGR02881 spore_V_K stage V sp 95.0 0.12 2.7E-06 61.7 10.5 27 1019-1045 42-68 (261)
287 TIGR01448 recD_rel helicase, p 95.0 0.18 3.9E-06 68.7 13.2 134 999-1163 322-455 (720)
288 PRK07003 DNA polymerase III su 94.8 0.15 3.2E-06 68.7 11.3 40 1121-1160 118-158 (830)
289 PRK12723 flagellar biosynthesi 94.7 0.62 1.3E-05 59.3 16.1 158 1020-1203 175-351 (388)
290 PRK10875 recD exonuclease V su 94.5 0.2 4.3E-06 67.0 11.6 141 1001-1162 153-303 (615)
291 COG3421 Uncharacterized protei 94.4 0.034 7.4E-07 71.5 4.0 107 1025-1135 3-125 (812)
292 PRK07764 DNA polymerase III su 94.1 0.27 5.8E-06 67.7 12.1 115 1022-1159 40-158 (824)
293 smart00382 AAA ATPases associa 94.0 0.11 2.4E-06 52.9 6.4 43 1020-1065 3-45 (148)
294 PRK14949 DNA polymerase III su 94.0 0.19 4E-06 68.9 9.9 40 1121-1160 118-158 (944)
295 PRK14956 DNA polymerase III su 93.9 0.21 4.7E-06 64.7 10.0 41 1005-1045 23-66 (484)
296 PLN03025 replication factor C 93.9 0.42 9.2E-06 58.9 12.1 50 1121-1170 98-148 (319)
297 PRK04296 thymidine kinase; Pro 93.8 0.18 3.9E-06 57.8 8.2 34 1022-1058 5-38 (190)
298 KOG0951 RNA helicase BRR2, DEA 93.5 0.15 3.3E-06 70.1 7.7 111 1014-1138 1154-1269(1674)
299 cd05494 Bromodomain_1 Bromodom 93.4 0.035 7.7E-07 59.1 1.5 39 1731-1770 19-60 (114)
300 KOG1133 Helicase of the DEAD s 93.3 1.9 4E-05 57.5 16.5 353 1066-1440 299-766 (821)
301 CHL00181 cbbX CbbX; Provisiona 93.2 0.24 5.2E-06 60.5 8.4 44 1019-1062 59-103 (287)
302 COG1875 NYN ribonuclease and A 93.2 0.26 5.6E-06 61.4 8.3 156 993-1164 220-391 (436)
303 PRK12323 DNA polymerase III su 93.1 0.4 8.6E-06 64.1 10.5 23 1023-1045 42-64 (700)
304 TIGR02880 cbbX_cfxQ probable R 93.0 0.23 5.1E-06 60.4 7.8 40 1019-1058 58-98 (284)
305 KOG1805 DNA replication helica 92.6 0.55 1.2E-05 64.0 10.7 147 1000-1162 669-831 (1100)
306 PRK12402 replication factor C 92.1 0.51 1.1E-05 57.7 9.1 39 1006-1044 21-61 (337)
307 TIGR03420 DnaA_homol_Hda DnaA 92.1 1 2.2E-05 52.1 11.0 92 1018-1160 37-132 (226)
308 PRK06526 transposase; Provisio 91.9 0.35 7.7E-06 58.1 7.3 53 1007-1070 90-142 (254)
309 PRK07994 DNA polymerase III su 91.9 1.1 2.4E-05 60.4 12.4 40 1121-1160 118-158 (647)
310 PRK09112 DNA polymerase III su 91.8 0.54 1.2E-05 59.1 9.1 41 1005-1045 28-71 (351)
311 PF13177 DNA_pol3_delta2: DNA 91.7 1.2 2.7E-05 49.9 10.9 136 1005-1165 2-146 (162)
312 PRK08181 transposase; Validate 91.6 1.1 2.4E-05 54.5 11.1 45 1001-1045 88-132 (269)
313 PRK08691 DNA polymerase III su 91.5 1.6 3.5E-05 59.0 13.3 48 1122-1169 119-167 (709)
314 cd05493 Bromo_ALL-1 Bromodomai 91.5 0.27 5.9E-06 53.7 5.1 67 1982-2048 56-122 (131)
315 PF13892 DBINO: DNA-binding do 91.4 4.1 9E-05 45.2 13.9 64 839-916 70-133 (139)
316 KOG1245 Chromatin remodeling c 91.3 0.04 8.6E-07 78.5 -1.6 49 1733-1782 1319-1368(1404)
317 PRK05703 flhF flagellar biosyn 91.2 2.6 5.7E-05 54.4 14.5 156 1020-1200 222-393 (424)
318 PRK14952 DNA polymerase III su 90.6 1.2 2.6E-05 59.5 10.9 41 1005-1045 18-61 (584)
319 PRK14960 DNA polymerase III su 90.2 1.7 3.8E-05 58.4 11.8 40 1121-1160 117-157 (702)
320 PTZ00112 origin recognition co 90.2 3.1 6.7E-05 57.3 14.0 52 991-1045 752-807 (1164)
321 PRK09111 DNA polymerase III su 90.1 1.4 3.1E-05 59.0 11.1 41 1005-1045 29-72 (598)
322 PRK14962 DNA polymerase III su 89.8 1.4 3.1E-05 57.4 10.5 23 1022-1044 39-61 (472)
323 smart00492 HELICc3 helicase su 89.8 1.8 3.9E-05 47.9 9.7 46 1379-1426 32-79 (141)
324 TIGR02928 orc1/cdc6 family rep 89.7 2 4.3E-05 53.5 11.3 44 1002-1045 20-66 (365)
325 PF05876 Terminase_GpA: Phage 89.6 0.38 8.3E-06 63.8 5.2 164 1000-1173 16-192 (557)
326 COG1484 DnaC DNA replication p 89.4 2.2 4.7E-05 51.5 10.8 66 1002-1070 88-153 (254)
327 PHA02533 17 large terminase pr 89.3 2.9 6.2E-05 55.5 12.7 146 999-1161 58-210 (534)
328 PRK14961 DNA polymerase III su 89.2 1.5 3.3E-05 55.2 9.8 40 1005-1044 21-63 (363)
329 PF06862 DUF1253: Protein of u 89.1 4.3 9.2E-05 52.7 13.6 115 1327-1443 280-398 (442)
330 PRK14963 DNA polymerase III su 88.9 2.6 5.7E-05 55.5 11.9 41 1005-1045 19-62 (504)
331 PRK11889 flhF flagellar biosyn 88.7 8.4 0.00018 49.6 15.5 153 1021-1203 243-416 (436)
332 PHA02544 44 clamp loader, smal 88.7 2.9 6.3E-05 51.1 11.5 40 1122-1161 100-141 (316)
333 PRK08084 DNA replication initi 88.6 2.3 4.9E-05 50.5 10.2 25 1020-1044 46-70 (235)
334 PRK07471 DNA polymerase III su 88.6 0.73 1.6E-05 58.3 6.4 142 1005-1160 24-181 (365)
335 PRK07952 DNA replication prote 88.6 3 6.5E-05 50.2 11.2 43 1021-1070 101-143 (244)
336 PRK08451 DNA polymerase III su 88.4 3.6 7.8E-05 54.6 12.7 39 1122-1160 117-156 (535)
337 PF00448 SRP54: SRP54-type pro 88.4 1.4 2.9E-05 51.3 7.9 133 1022-1175 4-140 (196)
338 PF13173 AAA_14: AAA domain 88.3 2.2 4.7E-05 45.8 8.9 38 1122-1160 61-98 (128)
339 PRK05707 DNA polymerase III su 88.2 1.6 3.5E-05 54.5 8.9 45 1000-1045 3-48 (328)
340 PRK14948 DNA polymerase III su 88.2 3.9 8.5E-05 55.2 13.1 41 1005-1045 21-64 (620)
341 PRK14964 DNA polymerase III su 87.9 4.1 9E-05 53.6 12.7 39 1122-1160 116-155 (491)
342 PF13245 AAA_19: Part of AAA d 87.8 1.5 3.4E-05 43.6 6.9 43 1022-1064 13-56 (76)
343 PRK14959 DNA polymerase III su 87.8 1.6 3.5E-05 58.5 9.1 24 1022-1045 41-64 (624)
344 smart00491 HELICc2 helicase su 87.7 1.7 3.6E-05 48.2 7.8 45 1382-1426 32-80 (142)
345 PRK08769 DNA polymerase III su 87.6 2.4 5.2E-05 52.9 9.9 151 1000-1170 4-162 (319)
346 PRK06835 DNA replication prote 87.5 4.8 0.0001 50.5 12.5 46 1000-1045 160-209 (329)
347 TIGR03015 pepcterm_ATPase puta 87.4 1.5 3.4E-05 51.9 7.9 39 1003-1041 26-65 (269)
348 PRK14957 DNA polymerase III su 87.3 2.8 6.1E-05 55.7 10.8 41 1005-1045 21-64 (546)
349 PRK14950 DNA polymerase III su 87.1 4.4 9.5E-05 54.4 12.6 40 1005-1044 21-63 (585)
350 PRK00440 rfc replication facto 87.0 6.6 0.00014 47.7 13.1 39 1122-1160 102-141 (319)
351 PRK14965 DNA polymerase III su 86.7 4.9 0.00011 53.9 12.7 113 1023-1159 42-157 (576)
352 PRK14951 DNA polymerase III su 86.6 3.4 7.3E-05 55.7 11.0 41 1005-1045 21-64 (618)
353 KOG0989 Replication factor C, 86.3 1.6 3.4E-05 53.8 7.1 42 1004-1045 40-83 (346)
354 PRK14958 DNA polymerase III su 86.3 3.2 7E-05 54.8 10.5 45 1121-1165 118-163 (509)
355 TIGR02768 TraA_Ti Ti-type conj 86.3 4.1 8.9E-05 56.2 11.9 126 998-1162 350-478 (744)
356 PRK08727 hypothetical protein; 86.3 5.3 0.00011 47.4 11.4 24 1022-1045 44-67 (233)
357 PRK08116 hypothetical protein; 85.8 5.8 0.00013 48.3 11.7 45 1019-1066 114-158 (268)
358 KOG0991 Replication factor C, 85.7 0.83 1.8E-05 54.1 4.2 102 1017-1156 46-148 (333)
359 COG0470 HolB ATPase involved i 85.4 3.1 6.7E-05 50.5 9.1 119 1022-1159 27-147 (325)
360 PRK14953 DNA polymerase III su 85.2 4.2 9.2E-05 53.4 10.8 40 1005-1044 21-63 (486)
361 TIGR00595 priA primosomal prot 85.1 5.1 0.00011 53.0 11.5 96 1324-1423 5-101 (505)
362 PRK08058 DNA polymerase III su 85.1 3.6 7.8E-05 51.3 9.7 131 1004-1159 10-148 (329)
363 PF05621 TniB: Bacterial TniB 85.0 3.7 8.1E-05 50.8 9.5 46 1115-1160 138-189 (302)
364 PRK14955 DNA polymerase III su 85.0 5 0.00011 51.3 11.1 41 1005-1045 21-64 (397)
365 PRK14722 flhF flagellar biosyn 85.0 5.7 0.00012 50.7 11.4 124 1019-1170 137-267 (374)
366 PRK00149 dnaA chromosomal repl 84.9 6.8 0.00015 50.9 12.3 98 1022-1159 151-252 (450)
367 KOG0921 Dosage compensation co 84.8 5.2 0.00011 54.6 11.1 137 1014-1160 388-535 (1282)
368 PRK06921 hypothetical protein; 84.7 6.4 0.00014 47.9 11.3 27 1019-1045 117-143 (266)
369 PF00004 AAA: ATPase family as 84.7 2.4 5.3E-05 44.2 6.8 34 1023-1062 2-35 (132)
370 PRK06645 DNA polymerase III su 84.7 4.9 0.00011 53.1 11.0 41 1005-1045 26-69 (507)
371 PRK14969 DNA polymerase III su 84.3 5 0.00011 53.3 10.9 40 1005-1044 21-63 (527)
372 PRK14088 dnaA chromosomal repl 84.2 7.7 0.00017 50.5 12.4 36 1022-1058 133-168 (440)
373 cd01120 RecA-like_NTPases RecA 83.8 8.4 0.00018 41.2 10.6 34 1023-1059 3-36 (165)
374 TIGR00362 DnaA chromosomal rep 83.6 7.5 0.00016 49.7 11.8 98 1022-1159 139-240 (405)
375 PRK07940 DNA polymerase III su 83.5 4.4 9.6E-05 52.0 9.7 24 1022-1045 39-62 (394)
376 PRK14087 dnaA chromosomal repl 83.4 8.4 0.00018 50.3 12.3 100 1022-1159 144-247 (450)
377 PRK08903 DnaA regulatory inact 83.2 6.1 0.00013 46.2 9.9 26 1019-1044 42-67 (227)
378 PRK05580 primosome assembly pr 83.1 6.8 0.00015 53.6 11.7 96 1325-1424 171-267 (679)
379 PRK14974 cell division protein 83.1 10 0.00022 47.9 12.3 45 1021-1068 142-190 (336)
380 PF06733 DEAD_2: DEAD_2; Inte 82.9 1.2 2.5E-05 50.3 3.8 39 1098-1136 117-159 (174)
381 PRK06647 DNA polymerase III su 82.9 5.9 0.00013 53.1 10.8 24 1022-1045 41-64 (563)
382 PRK00080 ruvB Holliday junctio 82.8 13 0.00028 46.3 13.1 23 1020-1042 52-74 (328)
383 PRK07993 DNA polymerase III su 82.8 4.6 9.9E-05 50.7 9.2 137 1000-1160 2-147 (334)
384 PHA03333 putative ATPase subun 82.8 5.9 0.00013 53.6 10.5 149 1003-1161 172-332 (752)
385 PRK06893 DNA replication initi 82.5 8.3 0.00018 45.7 10.8 24 1022-1045 42-65 (229)
386 PRK05563 DNA polymerase III su 82.5 9 0.00019 51.3 12.3 23 1023-1045 42-64 (559)
387 CHL00095 clpC Clp protease ATP 82.5 7.2 0.00016 54.4 11.9 26 1019-1044 200-225 (821)
388 PF00580 UvrD-helicase: UvrD/R 82.2 2.3 4.9E-05 51.0 6.2 119 1001-1132 1-125 (315)
389 PRK05642 DNA replication initi 82.1 10 0.00022 45.2 11.3 38 1122-1159 97-138 (234)
390 PRK14086 dnaA chromosomal repl 81.9 9.5 0.00021 51.4 12.0 98 1022-1159 317-418 (617)
391 TIGR00678 holB DNA polymerase 81.9 7.8 0.00017 44.1 9.9 24 1022-1045 17-40 (188)
392 cd01124 KaiC KaiC is a circadi 81.3 2.5 5.3E-05 47.3 5.6 48 1022-1072 2-49 (187)
393 TIGR03345 VI_ClpV1 type VI sec 81.0 5.1 0.00011 56.0 9.6 40 1005-1044 192-233 (852)
394 PRK00411 cdc6 cell division co 80.9 11 0.00023 47.8 11.6 44 1002-1045 35-81 (394)
395 COG0464 SpoVK ATPases of the A 80.8 5.1 0.00011 52.5 9.0 65 1001-1071 250-322 (494)
396 PRK06871 DNA polymerase III su 80.7 5.3 0.00012 50.0 8.7 46 1001-1046 3-51 (325)
397 COG3267 ExeA Type II secretory 80.6 5.3 0.00011 48.5 8.2 110 1021-1160 53-173 (269)
398 PF07015 VirC1: VirC1 protein; 80.6 9.4 0.0002 45.8 10.2 41 1028-1071 11-53 (231)
399 PRK06964 DNA polymerase III su 80.6 5 0.00011 50.6 8.5 46 1001-1046 2-48 (342)
400 PRK06090 DNA polymerase III su 80.5 7.1 0.00015 48.9 9.7 146 1000-1170 3-157 (319)
401 PRK13889 conjugal transfer rel 80.2 9.6 0.00021 54.0 11.7 127 998-1163 344-473 (988)
402 PRK12377 putative replication 80.0 11 0.00023 45.7 10.7 42 1020-1064 102-143 (248)
403 cd01121 Sms Sms (bacterial rad 79.5 8.1 0.00018 49.3 9.9 103 1006-1135 68-171 (372)
404 PRK04195 replication factor C 79.5 9 0.00019 50.3 10.6 24 1019-1042 39-62 (482)
405 PRK05896 DNA polymerase III su 79.1 13 0.00029 50.1 12.0 41 1005-1045 21-64 (605)
406 KOG0952 DNA/RNA helicase MER3/ 79.1 1.6 3.5E-05 60.1 3.8 111 1015-1136 939-1060(1230)
407 PRK09183 transposase/IS protei 79.0 9.6 0.00021 46.2 9.9 37 1018-1057 101-137 (259)
408 TIGR03346 chaperone_ClpB ATP-d 78.9 7.5 0.00016 54.5 10.2 40 1005-1044 178-219 (852)
409 PRK10917 ATP-dependent DNA hel 78.2 11 0.00024 51.5 11.3 98 1325-1425 291-393 (681)
410 PF05970 PIF1: PIF1-like helic 78.1 5.1 0.00011 50.7 7.6 61 1000-1063 1-63 (364)
411 PRK14954 DNA polymerase III su 78.0 11 0.00024 51.1 10.9 41 1005-1045 21-64 (620)
412 KOG0737 AAA+-type ATPase [Post 77.9 6.7 0.00015 49.6 8.2 49 1018-1072 126-174 (386)
413 PRK10865 protein disaggregatio 77.3 7.1 0.00015 54.7 9.2 40 1005-1044 183-224 (857)
414 TIGR02639 ClpA ATP-dependent C 77.1 10 0.00023 52.2 10.6 28 1018-1045 202-229 (731)
415 PRK12422 chromosomal replicati 77.0 7 0.00015 51.0 8.5 96 1022-1159 144-243 (445)
416 TIGR02688 conserved hypothetic 76.8 8.9 0.00019 49.7 9.1 55 1004-1064 194-249 (449)
417 PRK06731 flhF flagellar biosyn 76.7 53 0.0011 40.5 15.2 154 1019-1202 75-249 (270)
418 PRK13342 recombination factor 76.6 7.4 0.00016 50.0 8.5 21 1021-1041 38-58 (413)
419 TIGR02397 dnaX_nterm DNA polym 76.5 16 0.00035 45.3 11.2 24 1022-1045 39-62 (355)
420 PRK07133 DNA polymerase III su 76.2 8.2 0.00018 52.9 9.0 56 1985-2044 635-690 (725)
421 TIGR00708 cobA cob(I)alamin ad 76.1 8 0.00017 44.6 7.6 57 1115-1174 90-150 (173)
422 PRK12727 flagellar biosynthesi 76.0 24 0.00051 47.2 12.7 38 1019-1057 350-387 (559)
423 KOG0442 Structure-specific end 75.5 25 0.00054 48.5 12.8 179 1000-1196 13-202 (892)
424 PRK06305 DNA polymerase III su 75.3 17 0.00037 47.5 11.3 41 1005-1045 22-65 (451)
425 cd01122 GP4d_helicase GP4d_hel 75.3 11 0.00025 45.0 9.2 48 1009-1058 20-67 (271)
426 COG1474 CDC6 Cdc6-related prot 75.1 14 0.0003 47.2 10.2 50 1000-1049 20-72 (366)
427 cd00984 DnaB_C DnaB helicase C 74.6 11 0.00024 44.3 8.6 38 1019-1058 13-50 (242)
428 PRK05986 cob(I)alamin adenolsy 74.0 12 0.00025 43.9 8.4 140 1019-1174 22-168 (191)
429 PRK00771 signal recognition pa 74.0 16 0.00034 47.8 10.4 26 1020-1045 96-121 (437)
430 TIGR01242 26Sp45 26S proteasom 73.3 18 0.00039 45.7 10.6 40 1019-1064 156-195 (364)
431 TIGR01074 rep ATP-dependent DN 73.2 11 0.00023 51.3 9.2 105 1001-1133 2-112 (664)
432 TIGR01075 uvrD DNA helicase II 73.2 14 0.0003 50.9 10.2 105 1000-1133 4-114 (715)
433 COG0593 DnaA ATPase involved i 73.0 24 0.00053 45.7 11.5 39 1122-1160 175-219 (408)
434 PRK12724 flagellar biosynthesi 72.9 35 0.00075 44.6 12.8 154 1022-1204 226-399 (432)
435 PRK06995 flhF flagellar biosyn 72.3 22 0.00048 47.0 11.2 27 1022-1048 259-285 (484)
436 COG1419 FlhF Flagellar GTP-bin 71.7 1.5E+02 0.0032 38.8 17.7 132 1019-1177 203-340 (407)
437 PRK04132 replication factor C 71.5 11 0.00024 52.6 8.6 49 1122-1170 630-679 (846)
438 PRK10919 ATP-dependent DNA hel 71.2 11 0.00023 51.7 8.5 106 1000-1133 2-113 (672)
439 PF00308 Bac_DnaA: Bacterial d 71.1 33 0.00071 40.7 11.4 37 1122-1158 97-137 (219)
440 PRK11034 clpA ATP-dependent Cl 71.0 15 0.00033 50.9 9.8 26 1019-1044 207-232 (758)
441 PF13191 AAA_16: AAA ATPase do 69.9 23 0.0005 39.3 9.4 45 1002-1046 5-51 (185)
442 PF13481 AAA_25: AAA domain; P 69.7 22 0.00048 40.2 9.3 55 1019-1073 32-93 (193)
443 TIGR00643 recG ATP-dependent D 69.7 22 0.00049 48.3 10.9 99 1325-1425 265-367 (630)
444 PRK11773 uvrD DNA-dependent he 69.3 14 0.0003 51.0 8.9 104 1000-1132 9-118 (721)
445 TIGR03499 FlhF flagellar biosy 69.3 16 0.00034 44.9 8.5 38 1019-1057 194-231 (282)
446 PRK07399 DNA polymerase III su 69.0 22 0.00048 44.4 9.9 41 1005-1045 9-52 (314)
447 TIGR00763 lon ATP-dependent pr 68.8 2.4E+02 0.0052 39.7 20.5 23 1021-1043 349-371 (775)
448 PTZ00454 26S protease regulato 68.8 24 0.00052 45.6 10.3 42 1019-1066 179-220 (398)
449 TIGR03689 pup_AAA proteasome A 68.6 19 0.0004 48.0 9.5 26 1019-1044 216-241 (512)
450 PF01443 Viral_helicase1: Vira 68.5 4.6 0.0001 46.8 3.7 41 1121-1164 61-101 (234)
451 PRK13826 Dtr system oriT relax 68.1 33 0.00073 49.4 12.2 127 999-1164 380-509 (1102)
452 cd00561 CobA_CobO_BtuR ATP:cor 68.0 29 0.00062 39.7 9.6 131 1023-1173 6-147 (159)
453 PRK14873 primosome assembly pr 67.9 24 0.00051 48.5 10.5 94 1326-1423 170-265 (665)
454 PRK03992 proteasome-activating 66.9 15 0.00032 47.1 7.9 41 1019-1065 165-205 (389)
455 PRK11823 DNA repair protein Ra 66.8 15 0.00033 47.9 8.1 63 1006-1071 66-129 (446)
456 cd03115 SRP The signal recogni 66.5 59 0.0013 36.5 11.7 24 1022-1045 3-26 (173)
457 TIGR01243 CDC48 AAA family ATP 66.2 19 0.00042 49.7 9.4 38 1019-1062 212-249 (733)
458 PRK14971 DNA polymerase III su 65.9 55 0.0012 44.7 13.2 39 1122-1160 121-160 (614)
459 TIGR00665 DnaB replicative DNA 65.1 3.1E+02 0.0066 35.8 19.3 57 1006-1064 182-238 (434)
460 KOG0738 AAA+-type ATPase [Post 65.1 26 0.00057 44.9 9.2 46 1020-1072 246-292 (491)
461 COG0552 FtsY Signal recognitio 64.7 31 0.00066 43.6 9.6 123 1023-1168 143-277 (340)
462 PF03354 Terminase_1: Phage Te 64.3 35 0.00076 44.9 10.8 131 1003-1146 1-145 (477)
463 CHL00176 ftsH cell division pr 63.6 42 0.00091 46.0 11.5 23 1019-1041 216-238 (638)
464 PRK14712 conjugal transfer nic 63.6 34 0.00073 50.9 11.2 62 1000-1063 835-897 (1623)
465 PRK13709 conjugal transfer nic 63.4 43 0.00092 50.5 12.2 62 1000-1063 967-1029(1747)
466 TIGR00580 mfd transcription-re 63.4 34 0.00074 48.6 11.0 98 1325-1424 481-582 (926)
467 PHA03372 DNA packaging termina 63.3 17 0.00037 48.8 7.5 108 1017-1136 201-313 (668)
468 KOG0733 Nuclear AAA ATPase (VC 63.2 2.4E+02 0.0051 38.7 17.3 47 1019-1071 545-591 (802)
469 PHA03368 DNA packaging termina 63.2 19 0.00042 48.8 8.0 124 1023-1159 258-389 (738)
470 PRK06904 replicative DNA helic 63.0 68 0.0015 42.5 12.9 128 1006-1135 208-347 (472)
471 COG2256 MGS1 ATPase related to 62.8 9.9 0.00021 48.7 5.1 39 1123-1164 105-143 (436)
472 PF01695 IstB_IS21: IstB-like 62.2 18 0.00039 41.5 6.8 40 1017-1059 45-84 (178)
473 PRK06067 flagellar accessory p 62.2 36 0.00077 40.2 9.4 47 1022-1071 28-74 (234)
474 PRK10867 signal recognition pa 60.9 44 0.00095 43.8 10.6 34 1022-1057 103-136 (433)
475 TIGR02640 gas_vesic_GvpN gas v 60.9 20 0.00044 43.4 7.2 49 1003-1057 5-53 (262)
476 PRK10416 signal recognition pa 60.4 57 0.0012 41.1 11.1 32 1023-1057 118-149 (318)
477 KOG0740 AAA+-type ATPase [Post 60.1 13 0.00028 48.2 5.6 46 1021-1072 188-233 (428)
478 PRK13849 putative crown gall t 60.0 34 0.00073 41.0 8.7 38 1028-1068 11-50 (231)
479 PRK09165 replicative DNA helic 60.0 1.2E+02 0.0027 40.4 14.6 128 1008-1135 206-354 (497)
480 PRK08533 flagellar accessory p 60.0 44 0.00095 39.9 9.7 38 1019-1059 24-61 (230)
481 PRK08760 replicative DNA helic 59.9 69 0.0015 42.5 12.2 126 1008-1135 218-352 (476)
482 PRK14721 flhF flagellar biosyn 59.7 84 0.0018 41.2 12.7 79 1122-1201 269-363 (420)
483 PRK11054 helD DNA helicase IV; 59.1 21 0.00046 49.0 7.7 63 1000-1068 196-259 (684)
484 PRK05748 replicative DNA helic 59.1 76 0.0017 41.5 12.4 128 1006-1135 190-327 (448)
485 TIGR00959 ffh signal recogniti 59.1 42 0.00091 43.9 10.0 24 1022-1045 102-125 (428)
486 cd01125 repA Hexameric Replica 59.1 29 0.00064 41.2 8.0 51 1022-1072 4-66 (239)
487 PRK13341 recombination factor 59.0 26 0.00056 48.5 8.5 22 1020-1041 53-74 (725)
488 PRK08699 DNA polymerase III su 59.0 29 0.00062 43.7 8.2 45 1001-1045 2-47 (325)
489 PRK14970 DNA polymerase III su 58.8 79 0.0017 40.0 12.2 40 1005-1044 22-64 (367)
490 cd01128 rho_factor Transcripti 58.7 24 0.00053 42.8 7.3 30 1008-1038 6-35 (249)
491 PRK14723 flhF flagellar biosyn 58.7 47 0.001 46.2 10.7 152 1022-1203 188-362 (767)
492 PHA02244 ATPase-like protein 58.7 43 0.00093 43.1 9.6 29 1014-1042 114-142 (383)
493 TIGR01243 CDC48 AAA family ATP 58.6 14 0.00031 50.9 6.1 42 1019-1066 487-528 (733)
494 COG1198 PriA Primosomal protei 58.0 24 0.00052 48.7 7.9 81 1324-1407 225-306 (730)
495 TIGR01425 SRP54_euk signal rec 57.8 80 0.0017 41.4 12.1 33 1022-1057 103-135 (429)
496 PTZ00293 thymidine kinase; Pro 57.5 31 0.00066 41.2 7.7 34 1023-1059 8-41 (211)
497 PRK09376 rho transcription ter 57.4 30 0.00065 44.8 8.0 36 1008-1044 159-194 (416)
498 PRK05564 DNA polymerase III su 56.7 47 0.001 41.1 9.6 22 1023-1044 30-51 (313)
499 PRK12726 flagellar biosynthesi 56.4 1.1E+02 0.0023 40.0 12.5 47 1019-1068 206-256 (407)
500 PRK10689 transcription-repair 55.5 59 0.0013 47.4 11.3 96 1325-1422 630-729 (1147)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.6e-161 Score=1494.68 Aligned_cols=960 Identities=39% Similarity=0.595 Sum_probs=800.3
Q ss_pred cChHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----H
Q 000099 703 YDVKDLLSEEGLEVLQK--KRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQE----I 776 (2240)
Q Consensus 703 ~d~~~~~~~~~~~~~~~--~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~q~~lr~~~~~~~~~----~ 776 (2240)
||+..+...++++++.+ .+.++++++++.+. ++++++|.||+++|||+++|++||..++.|+.. .
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~~---------~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~ 198 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSLM---------GELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSE 198 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcch---------HHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccc
Confidence 99999999999987776 48999999988652 689999999999999999999999999998643 3
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000099 777 MAMPDRQYRKFVRLCERQRVELMRQVQTSQKAM-----REK---QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHER 848 (2240)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----r~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~ 848 (2240)
++++...|++-+++..+. .+++++++++||-+ |.+ ++.+++.|.++|.+.|+....+..+++++|..||.+
T Consensus 199 ~~~n~~~~~R~~~q~~~~-~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~ 277 (1157)
T KOG0386|consen 199 TALNPKAFKRGKRQTLSE-ARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHAN 277 (1157)
T ss_pred cccCHHHHhhhhhhhHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888877665 55666665554432 333 378999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhchHHHHHHHHHHhhcCCCcchHHHHHHHHHhHhhhHHHHHHhhhhhHHhhhhHHHHHH
Q 000099 849 ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA 928 (2240)
Q Consensus 849 ~~~~~~kr~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~LL~qte~~l~~l~~~v~~~k~~q~~~~~ 928 (2240)
++++++|+.++.+|+||.+||.||+|+|++|++++| |. ||++||+||++|+.+|+.+|+.++.. .
T Consensus 278 ~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~K-------d~---Rl~~LL~qt~~yl~sL~s~Vk~qk~~--~--- 342 (1157)
T KOG0386|consen 278 QERERERRIDRIEKERASALKHNDEEGYRKLQDQKK-------DN---RLSQLLSQTDSYLPSLSSVVKGQKSE--N--- 342 (1157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhcc-------cc---HHHHhhhhhhHHHHHHHHHHHHhhcc--c---
Confidence 999999999999999999999999999999999986 34 47899999999999999988766530 0
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhhhhhHHhhhhhcccCCCCCCchhhhhhhhHHhhhhhhccCCCccCCCCCcHHHHH
Q 000099 929 ANAAAAAARLQGL-SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIV 1007 (2240)
Q Consensus 929 ~~~~~~~~r~~gl-~~ee~~~~~~~~~ee~~i~~~f~e~~~p~~~s~~~kyy~lah~i~e~v~~qPs~L~ggtLRPYQle 1007 (2240)
.+. +..++......+..+. + ....+..+||.++|.+.|.|.+||+++.||+|++||+.
T Consensus 343 ----------~~~~~~~d~~~i~~~ak~~~---------~--d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~ 401 (1157)
T KOG0386|consen 343 ----------PDANSASDISGISGSAKADV---------D--DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLH 401 (1157)
T ss_pred ----------cccchhhhhhhhhhhhcchh---------h--hhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhh
Confidence 000 0000000000000000 0 02234578999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhh
Q 000099 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQ 1087 (2240)
Q Consensus 1008 GLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~Gskde 1087 (2240)
||+||+++|+|++|||||||||||||||+|++|+||++.++..||+|||||+++|.||..||.+|+|++..++|.|+++.
T Consensus 402 GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~ 481 (1157)
T KOG0386|consen 402 GLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQ 481 (1157)
T ss_pred hhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-ccccceEEEeecCCCCCCHH
Q 000099 1088 RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDLK 1166 (2240)
Q Consensus 1088 Rk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lks~~RLLLTGTPLQNnL~ 1166 (2240)
|..+..+ +..++|+|++|||+++++++..|.+++|.||||||+|||||..|+++..|. .|.+.+||||||||+||++.
T Consensus 482 R~~l~~q-ir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~Lp 560 (1157)
T KOG0386|consen 482 RSGLTKQ-QRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLP 560 (1157)
T ss_pred HhhHHHH-HhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccH
Confidence 9888765 556999999999999999999999999999999999999999999999999 78999999999999999999
Q ss_pred HHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEE
Q 000099 1167 ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSI 1246 (2240)
Q Consensus 1167 ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~ 1246 (2240)
|||+|||||+|.||+++..|.+||+.||+++| +..++++++.+++|+|||+||+||+|||+|++|+.+||+|++.
T Consensus 561 ELWaLLNFlLP~IFnS~~~FeqWFN~PFantG-----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~ 635 (1157)
T KOG0386|consen 561 ELWALLNFLLPNIFNSCKAFEQWFNQPFANTG-----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVED 635 (1157)
T ss_pred HHHHHHHHhccchhhhHhHHHHHhhhhhhhcC-----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhH
Confidence 99999999999999999999999999999997 3456888999999999999999999999999999999999999
Q ss_pred EEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC----Cccccchhh
Q 000099 1247 VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP----YFSDLSKDF 1322 (2240)
Q Consensus 1247 vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p----~~~~ls~d~ 1322 (2240)
+++|.||+.|+.+|.++.+.+.+.++. ....+.++.|+|.+|+|||||||||+|.. .......+.
T Consensus 636 viKC~mSalQq~lY~~m~~~g~l~~d~-----------~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~d 704 (1157)
T KOG0386|consen 636 VIKCDMSALQQSLYKQMQNKGQLLKDT-----------AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKD 704 (1157)
T ss_pred hhheehhhhhHhhhHHHHhCCCCCcCc-----------hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhH
Confidence 999999999999999999988877665 12234678999999999999999999843 233334468
Q ss_pred HhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000099 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (2240)
Q Consensus 1323 LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLL 1402 (2240)
+++.||||++|++||++|+++|||||+||+||.++++|++||..++++|+|+||+|+.++|..+++.||.|+++||+||+
T Consensus 705 L~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fll 784 (1157)
T KOG0386|consen 705 LVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLL 784 (1157)
T ss_pred HHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcc
Q 000099 1403 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 1482 (2240)
Q Consensus 1403 STrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~g 1482 (2240)
||+|||+|||||+|||||+||++|||+.+.||.+|+|||||+++|+|+++++|
T Consensus 785 stragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv--------------------------- 837 (1157)
T KOG0386|consen 785 STRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV--------------------------- 837 (1157)
T ss_pred eecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh---------------------------
Confidence 99999999999999999999999999999999999999999999999999885
Q ss_pred cccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHHHhcCHHHH
Q 000099 1483 KDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEV 1562 (2240)
Q Consensus 1483 Kdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LLe~ee~~~e~~~~v~~~eeLN~~lARseeE~ 1562 (2240)
++|||.|+++ +.+|++++++||+||+||+++++++|+++|+.+++.++...+ .+++++++||+++||+++|+
T Consensus 838 -----~sveE~il~~-a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~--~~v~~~~~ln~~larseeE~ 909 (1157)
T KOG0386|consen 838 -----NSVEEKILAE-AFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEE--EEVPDDEVLNSMLARSEEEF 909 (1157)
T ss_pred -----hHHHHHHHHH-HHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCcccc--ccCCcHHHHHHHHhcchHHH
Confidence 7999999985 589999999999999999999999999999999998765433 78999999999999999999
Q ss_pred HHHHhhhhhhCcch-------hhhccccchHHHhhchHHHHHHHhhhcCCCCcccccccccccCccchhhhhhcCCCCCC
Q 000099 1563 ELFDQMDEEFGWIE-------EMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKK 1635 (2240)
Q Consensus 1563 elf~~mD~er~~~~-------~l~~~~evP~~lr~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~erkr~~~~~k 1635 (2240)
++|.+||.+|.|.+ +++.+.++|+|+...+.+++..-+. ... .....||...||
T Consensus 910 ~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~~----~~~---------------~~~~~rg~r~Rk 970 (1157)
T KOG0386|consen 910 ELFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSEE----EEE---------------EKILGRGRRARK 970 (1157)
T ss_pred HHHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhhh----hhh---------------hccccccccccc
Confidence 99999999997743 6788999999998776665542210 000 011235555566
Q ss_pred CCCCccccccccccccccccccCCCCCc--cccccCCCccccccCCCCCCCCCCCCCCcCCCCcccCCCccCcccccccc
Q 000099 1636 YPNYKEVDDEIGEYSEASSDERNGYPVQ--EEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRN 1713 (2240)
Q Consensus 1636 ~~~~k~~~~~~~~~~e~~~~~~~~~~~~--~~~g~~~~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 1713 (2240)
+-.|+. ...+..+-++.|+..+..... ...|...-..|++....... ...+-- +..+.. ..
T Consensus 971 ev~y~d-~~te~q~~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~---~~~~~~-i~ 1033 (1157)
T KOG0386|consen 971 EVVYSD-RLTEMQWLKENESVNKEDSEEEERRRGRKKSSLDTRPLSQKKR------------KLRPRS---PKQALK-IA 1033 (1157)
T ss_pred eeeccc-ccchhhhhhhccccccccchhhhhccCCCccccccccchhhcc------------cccCCC---hHHHHH-HH
Confidence 644441 111222222222211110000 00111111112111110000 111111 122233 22
Q ss_pred chhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------
Q 000099 1714 NHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---------- 1782 (2240)
Q Consensus 1714 ~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---------- 1782 (2240)
..+.... +++||.+++.| ++||++.|||||.+|++|+++.+ |...|+.+.|.++.++.+||.+
T Consensus 1034 ~~~~~~~-----~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~ 1107 (1157)
T KOG0386|consen 1034 STSIKYK-----DSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDK-IKKRIENHKYNSLKELEKDFMLLFNNARTYNE 1107 (1157)
T ss_pred HHHHhcc-----cccccccchhcccCcccccccchHHHhcchhhHHH-HhhhccccccchHHHHHHHHHhhcchhhhhcc
Confidence 3333333 55899999999 99999999999999999999999 9999999999999999999998
Q ss_pred CCCccccCCcccccccccccccccc
Q 000099 1783 SGSWTHDRDEGEDEQVLQPKIKRKR 1807 (2240)
Q Consensus 1783 ~~Sw~~~~~~~~d~~~~~~~~~rkr 1807 (2240)
.|||++ +|+.+++.+..-++
T Consensus 1108 egs~~y-----~d~~~l~~~~~~~~ 1127 (1157)
T KOG0386|consen 1108 EGSRVY-----EDAIVLQSVFKSAR 1127 (1157)
T ss_pred CCceec-----hhHHHHHHHHhhhH
Confidence 899999 99999995544443
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.1e-107 Score=994.34 Aligned_cols=511 Identities=43% Similarity=0.717 Sum_probs=451.5
Q ss_pred hhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
....+|..+.+|+||+||++||+||+++|.|+.|||||||||||||+|+|+++.||...++..||+|||||.|++.||.+
T Consensus 155 ~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 155 RFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34458999998999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~ 1147 (2240)
||.+|+|++.+++|+|.+++|..+.......+.|+||||||++++++.+.|.++.|.||||||||||||..|++++.|+.
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~ 314 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE 314 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHH
Confidence 99999999999999999999988877777778999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
|.+.+||||||||+||||.|||+|||||+|++|++.+.|..||..... +.....+.+||.+|+||
T Consensus 315 f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------------~~~~e~v~~Lh~vL~pF 379 (971)
T KOG0385|consen 315 FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------------EGDQELVSRLHKVLRPF 379 (971)
T ss_pred hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------------ccCHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999975311 01112678999999999
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
+|||+|.+|++.||++.|.+++|.||..|+..|+.++......+..... ..-..|+|++|+|||||||
T Consensus 380 lLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~------------~~k~kL~NI~mQLRKccnH 447 (971)
T KOG0385|consen 380 LLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK------------GEKTKLQNIMMQLRKCCNH 447 (971)
T ss_pred HHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc------------chhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999987654332221110 0235799999999999999
Q ss_pred CCCCCCCc---cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1308 PLLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1308 P~L~~p~~---~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
||||.... ...+.+.++..|||+.+|+++|++|.+.||||||||||+.++|||++||.+++|.||||||+|+.++|.
T Consensus 448 PYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~ 527 (971)
T KOG0385|consen 448 PYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEERE 527 (971)
T ss_pred ccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHH
Confidence 99987532 234567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhh
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1464 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~ 1464 (2240)
..|+.||.+++..|||||||+|||+||||++|||||+||+||||+.++||++|||||||+|+|.||+|++
T Consensus 528 ~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit---------- 597 (971)
T KOG0385|consen 528 DAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT---------- 597 (971)
T ss_pred HHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccC-ccCcHHHHHHHHHHHHhhhhhh-hccc
Q 000099 1465 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD-QRTTHEERRMTLETLLHDEERY-QETV 1542 (2240)
Q Consensus 1465 eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD-~kst~eERr~~Le~LLe~ee~~-~e~~ 1542 (2240)
.++|||+|++++ ..|+.++..||+.|... +++.. .-...+..++.-+... .+..
T Consensus 598 ----------------------entVEe~IveRA-~~KL~Ld~~VIq~g~l~~~~~~~-~~k~~~l~~~r~g~~~~f~~~ 653 (971)
T KOG0385|consen 598 ----------------------ENTVEEKIVERA-AAKLRLDKLVIQQGRLEEQKSNG-LGKDELLNLLRFGADPVFESK 653 (971)
T ss_pred ----------------------cchHHHHHHHHH-HHHhchhhhhhccCchhhhhccc-cchHHHHHHHHcCchhhhhhc
Confidence 379999999985 67999999999999433 33322 2233344555433221 2222
Q ss_pred cCCCCHHHHHHHHhcCHH
Q 000099 1543 HDVPSLQEVNRMIARSED 1560 (2240)
Q Consensus 1543 ~~v~~~eeLN~~lARsee 1560 (2240)
....++ +|..++.|+++
T Consensus 654 es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 654 ESTISD-DIDRILERGEE 670 (971)
T ss_pred ccccch-hHHHHHHhhhh
Confidence 223333 89999988874
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.3e-98 Score=950.57 Aligned_cols=508 Identities=40% Similarity=0.668 Sum_probs=445.0
Q ss_pred hhhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 987 e~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
.++..||.++.|.+||+||++||+||+..|.++.|||||||||||||+|+|++|.+|+......||||||||.+++.+|.
T Consensus 357 ~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~ 436 (1373)
T KOG0384|consen 357 RKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWE 436 (1373)
T ss_pred HHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecchhhHhHHHHHHHhh------cCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhH
Q 000099 1067 SELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA------LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (2240)
Q Consensus 1067 ~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~------~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (2240)
+||..|+ .+++++|+|....|.-+...++.. .+|+++||||+++.+|...|..++|.+++||||||+||..|+
T Consensus 437 ~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 437 REFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHH
Confidence 9999999 999999999998887765555432 369999999999999999999999999999999999999999
Q ss_pred HHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1141 lskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
++..|..|...+|||+||||+||++.|||+||+||+|+-|.++..|...|.. +....+..|
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------------~~e~~~~~L 576 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------------ETEEQVRKL 576 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------------hhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987621 112247899
Q ss_pred HHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000099 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (2240)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmq 1300 (2240)
|.+|+||||||+|+||++.||+|.|.++.|.||+.|+.+|++|+..+...+.. +.. ....+|+|++|.
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK---------G~~---g~~~~lLNimmE 644 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK---------GAK---GSTPSLLNIMME 644 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc---------cCC---CCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999998764332221 110 112579999999
Q ss_pred HHHHcCCCCCCCCCcccc-----------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCc
Q 000099 1301 LRKTCNHPLLNYPYFSDL-----------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (2240)
Q Consensus 1301 LRKICNHP~L~~p~~~~l-----------s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGi 1369 (2240)
|+||||||||+.+..+.+ ....++.+|||+.+|++||.+|++.||||||||||+.++|||++||..++|
T Consensus 645 LkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~y 724 (1373)
T KOG0384|consen 645 LKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGY 724 (1373)
T ss_pred HHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCC
Confidence 999999999987654322 234478999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
+|.||||++..+-|+.+|+.||+++++-|||||||+|||+||||.+||||||||+||||+.++||+.|||||||++.|.|
T Consensus 725 pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 725 PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcH--HHHHHH
Q 000099 1450 IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH--EERRMT 1527 (2240)
Q Consensus 1450 yrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~--eERr~~ 1527 (2240)
|||+| .+|||+-|++++ ..|+-++..||+.+.++...+. .-....
T Consensus 805 YRLVT--------------------------------k~TvEeEilERA-k~KmvLD~aVIQ~m~t~~~~s~~~~f~K~E 851 (1373)
T KOG0384|consen 805 YRLVT--------------------------------KNTVEEEILERA-KLKMVLDHAVIQRMDTKGKTSKSNPFSKEE 851 (1373)
T ss_pred EEEec--------------------------------CCchHHHHHHHH-HHHhhhHHHHHHhhccccccCCCCCCCHHH
Confidence 99987 489999999985 8899999999999877433221 222456
Q ss_pred HHHHHhhhhh--hhc--cccCCCCHHHHHHHHhcCH
Q 000099 1528 LETLLHDEER--YQE--TVHDVPSLQEVNRMIARSE 1559 (2240)
Q Consensus 1528 Le~LLe~ee~--~~e--~~~~v~~~eeLN~~lARse 1559 (2240)
|.+||.-++. .++ .....+...+|.+||.|.+
T Consensus 852 LsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae 887 (1373)
T KOG0384|consen 852 LSAILKFGAYELFKEEENEESKFCEMDIDEILERAE 887 (1373)
T ss_pred HHHHHHhchHHhhhccccccccccccCHHHHHhhcc
Confidence 7777764221 122 1222344456777776643
No 4
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=4.3e-92 Score=846.29 Aligned_cols=465 Identities=40% Similarity=0.732 Sum_probs=414.4
Q ss_pred hhhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 987 e~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
+.-..||.+|.+ +|++||++||+||+.+|..+.|||||||||||||+|+|+++++|.+.+..+||||||+|.++|.||.
T Consensus 555 t~tV~qPkil~c-tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWa 633 (1185)
T KOG0388|consen 555 TRTVPQPKILKC-TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWA 633 (1185)
T ss_pred eeeccCchhhhh-hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHH
Confidence 344689999964 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecchhhHhHHHHHH------HhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhH
Q 000099 1067 SELHKWLPSVSCIYYVGAKDQRSRLFSQE------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (2240)
Q Consensus 1067 ~Ef~Kw~PslkVvvy~GskdeRk~l~~qe------i~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (2240)
.||.+|+|.++++.|.|+..+|+.+.... -....|+|+||||+.+..|...|.+++|.|+|+|||+.||...|.
T Consensus 634 qEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~ 713 (1185)
T KOG0388|consen 634 QEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSS 713 (1185)
T ss_pred HHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhh
Confidence 99999999999999999999987664321 135679999999999999999999999999999999999999999
Q ss_pred HHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1141 lskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
+|+.|..|+|+.|||||||||||+..|||+||+|++|.+|++...|.+||.+.++....... .++ ...+.||
T Consensus 714 RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~----tln----eqqL~RL 785 (1185)
T KOG0388|consen 714 RWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT----TLN----EQQLQRL 785 (1185)
T ss_pred HHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC----CcC----HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776422211 111 1247899
Q ss_pred HHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000099 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (2240)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmq 1300 (2240)
|.+|.||||||.|+||..+|..|+++.|+|+||..|..+|+.+..... ...+.+++|+
T Consensus 786 H~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------------------~~E~~~~vmQ 843 (1185)
T KOG0388|consen 786 HAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------------------SMEMENLVMQ 843 (1185)
T ss_pred HHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------------------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999998865311 1223358999
Q ss_pred HHHHcCCCCCCCCC------------------------------------------------------------------
Q 000099 1301 LRKTCNHPLLNYPY------------------------------------------------------------------ 1314 (2240)
Q Consensus 1301 LRKICNHP~L~~p~------------------------------------------------------------------ 1314 (2240)
||++||||.||...
T Consensus 844 lrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~ 923 (1185)
T KOG0388|consen 844 LRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNA 923 (1185)
T ss_pred HHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcch
Confidence 99999999763100
Q ss_pred -c---------ccc------------------------------------------------------------------
Q 000099 1315 -F---------SDL------------------------------------------------------------------ 1318 (2240)
Q Consensus 1315 -~---------~~l------------------------------------------------------------------ 1318 (2240)
+ ..+
T Consensus 924 w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId 1003 (1185)
T KOG0388|consen 924 WYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEID 1003 (1185)
T ss_pred hcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCC
Confidence 0 000
Q ss_pred ---------------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHH
Q 000099 1319 ---------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (2240)
Q Consensus 1319 ---------------s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eER 1383 (2240)
..+..+..|||+..|+.+|++|++.|||||+|+|||.|+|+|++||..++|.|+||||+.+..+|
T Consensus 1004 ~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dR 1083 (1185)
T KOG0388|consen 1004 LENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDR 1083 (1185)
T ss_pred ccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHH
Confidence 00112567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhh
Q 000099 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 1463 (2240)
Q Consensus 1384 eeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q 1463 (2240)
..++.+|+. +++||||+||+|||+||||++||||||||++|||+.+.||++||||+||+++|+||+|++
T Consensus 1084 rd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~--------- 1152 (1185)
T KOG0388|consen 1084 RDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT--------- 1152 (1185)
T ss_pred HHHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc---------
Confidence 999999996 889999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCc
Q 000099 1464 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1517 (2240)
Q Consensus 1464 ~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~ 1517 (2240)
.++|||+|++++ ..|..+-..|+.++.|..
T Consensus 1153 -----------------------rgTvEEk~l~rA-~qK~~vQq~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1153 -----------------------RGTVEEKVLERA-NQKDEVQQMVMHGNIFQG 1182 (1185)
T ss_pred -----------------------cccHHHHHHHHh-hhHHHHHHHHHcCCcccC
Confidence 379999999975 668888999998888743
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-92 Score=874.09 Aligned_cols=485 Identities=41% Similarity=0.726 Sum_probs=428.8
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
..|++|. |.||+||..||+||+.+|++++|||||||||||||||+|+|+++|...+++|||+|||||++++.||..||+
T Consensus 607 pvPsLLr-GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 607 PVPSLLR-GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred CchHHHH-HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 4566665 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcccc
Q 000099 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (2240)
Q Consensus 1071 Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks 1150 (2240)
+|||+++++.|+|+..+|+.....+.....|||+||+|..+..|...|...+|.|+||||+|+|||..+.+|++|..|++
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfns 765 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNS 765 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccch
Confidence 99999999999999999988777777788899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.+||||||||++|++.|||+|++||+|.+|.+.+.|..||..|+....... .+.....+.|||++|+||+||
T Consensus 766 qrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs--------qeyn~klV~RLHkVlrPfiLR 837 (1958)
T KOG0391|consen 766 QRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS--------QEYNHKLVIRLHKVLRPFILR 837 (1958)
T ss_pred hheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc--------hhhchHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999986542211 122244688999999999999
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
|+|.||+++||.|.|++|+|.||..|+.+|+.+..... .+..+. .+.+-++.|++|+||||||||.|
T Consensus 838 RlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~-------TKetLk------SGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 838 RLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG-------TKETLK------SGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred HHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc-------hhhHhh------cCchhHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999997754321 111111 23467889999999999999966
Q ss_pred CCCCc---------------------------------------------------------------------------
Q 000099 1311 NYPYF--------------------------------------------------------------------------- 1315 (2240)
Q Consensus 1311 ~~p~~--------------------------------------------------------------------------- 1315 (2240)
|.+..
T Consensus 905 fEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~p 984 (1958)
T KOG0391|consen 905 FEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIP 984 (1958)
T ss_pred CCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCc
Confidence 21000
Q ss_pred -------------------cc-----------------------------------------------------------
Q 000099 1316 -------------------SD----------------------------------------------------------- 1317 (2240)
Q Consensus 1316 -------------------~~----------------------------------------------------------- 1317 (2240)
..
T Consensus 985 t~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~s 1064 (1958)
T KOG0391|consen 985 TFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVS 1064 (1958)
T ss_pred cccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecc
Confidence 00
Q ss_pred ----------------c---------------------------------------------------------------
Q 000099 1318 ----------------L--------------------------------------------------------------- 1318 (2240)
Q Consensus 1318 ----------------l--------------------------------------------------------------- 1318 (2240)
+
T Consensus 1065 v~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~ 1144 (1958)
T KOG0391|consen 1065 VPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYL 1144 (1958)
T ss_pred ccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhh
Confidence 0
Q ss_pred -c-----hh-----------------------------------------------------------------------
Q 000099 1319 -S-----KD----------------------------------------------------------------------- 1321 (2240)
Q Consensus 1319 -s-----~d----------------------------------------------------------------------- 1321 (2240)
. .+
T Consensus 1145 ~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~ 1224 (1958)
T KOG0391|consen 1145 VNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRIL 1224 (1958)
T ss_pred ccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHH
Confidence 0 00
Q ss_pred -----------------------------hHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEE
Q 000099 1322 -----------------------------FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (2240)
Q Consensus 1322 -----------------------------~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~ 1372 (2240)
.+--.|||+..|.-+|..|+..|||||||+||+.|+|+|+.||.++|+.|+
T Consensus 1225 ~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~ 1304 (1958)
T KOG0391|consen 1225 RQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYV 1304 (1958)
T ss_pred HHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEE
Confidence 001146899999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1373 rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
||||+|+.++|+.++++||. |..+|||||||+.||+||||+.||||||||+||||.++.||++|+|||||+++|+||||
T Consensus 1305 RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1305 RLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred EecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 99999999999999999997 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHH
Q 000099 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 1532 (2240)
Q Consensus 1453 vTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LL 1532 (2240)
++ ..+||+.|++++ ..|.-+++.+|+.|.| +++--+...+.+|+
T Consensus 1384 IS--------------------------------e~TIEeniLkka-nqKr~L~evaiqggdf---Tt~ff~q~ti~dLF 1427 (1958)
T KOG0391|consen 1384 IS--------------------------------ERTIEENILKKA-NQKRMLDEVAIQGGDF---TTAFFKQRTIRDLF 1427 (1958)
T ss_pred ec--------------------------------cchHHHHHHhhh-hHHHHHHHHhhccCCc---cHHHHhhhhHHHHh
Confidence 76 268999999875 5577889999999999 55656666666777
Q ss_pred hh
Q 000099 1533 HD 1534 (2240)
Q Consensus 1533 e~ 1534 (2240)
+-
T Consensus 1428 d~ 1429 (1958)
T KOG0391|consen 1428 DV 1429 (1958)
T ss_pred cC
Confidence 64
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=8.6e-87 Score=873.24 Aligned_cols=512 Identities=40% Similarity=0.710 Sum_probs=446.9
Q ss_pred hhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
.+..+|..+. ++|||||+.||+||+.++.++.|||||||||||||+|+|++|.++....+..+|+|||||.+++.||..
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 3456898887 699999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~ 1147 (2240)
||.+|+|.+.+++|+|....|..+.........|+||||||+++.++...|..+.|++|||||||++||..+++++++..
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~ 316 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRL 316 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 99999999999999999988776655445567899999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
+.+.+||+|||||++|++.|||+||+||.|++|++...|..||...... .....+.+||.+|+||
T Consensus 317 L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---------------~~~e~i~~L~~~L~pf 381 (1033)
T PLN03142 317 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---------------DQQEVVQQLHKVLRPF 381 (1033)
T ss_pred hhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---------------chHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999752110 1123577899999999
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
++||+|.+|...||++.+.+++|.||+.|+.+|..+.......+. .. .....+.+++++||+||+|
T Consensus 382 ~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~---------~g-----~~~~~LlnilmqLRk~cnH 447 (1033)
T PLN03142 382 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN---------AG-----GERKRLLNIAMQLRKCCNH 447 (1033)
T ss_pred HhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh---------cc-----ccHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988654211111 00 1234678899999999999
Q ss_pred CCCCCCCc---cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1308 PLLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1308 P~L~~p~~---~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
|+++.... .......++..|+|+.+|+++|..+...|+||||||+|+.++++|+++|..+|+.|++|||+++.++|.
T Consensus 448 P~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq 527 (1033)
T PLN03142 448 PYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 527 (1033)
T ss_pred HHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 99975332 223456678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhh
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1464 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~ 1464 (2240)
.+|+.||.+++..+||||||+|||+||||+.||+||+||+||||..++||+||+|||||+++|.||+|++
T Consensus 528 ~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt---------- 597 (1033)
T PLN03142 528 ASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT---------- 597 (1033)
T ss_pred HHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEe----------
Confidence 9999999888888999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHHhhhhh-hhcccc
Q 000099 1465 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER-YQETVH 1543 (2240)
Q Consensus 1465 eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LLe~ee~-~~e~~~ 1543 (2240)
.+|||+.|+++ +..|+.++..||+.|.+..... .....|.+|+.-... .-....
T Consensus 598 ----------------------~gTIEEkIler-a~~Kl~Ld~~Vi~~g~~~~~~~--~~~~eL~~ll~~ga~~~f~~~~ 652 (1033)
T PLN03142 598 ----------------------EYTIEEKVIER-AYKKLALDALVIQQGRLAEQKT--VNKDELLQMVRYGAEMVFSSKD 652 (1033)
T ss_pred ----------------------CCcHHHHHHHH-HHHHHHHHHHHHhcCccccccc--CCHHHHHHHHHhChHHhhhccC
Confidence 38999999996 5889999999999998764321 113345666653222 112223
Q ss_pred CCCCHHHHHHHHhcCHHHHHH
Q 000099 1544 DVPSLQEVNRMIARSEDEVEL 1564 (2240)
Q Consensus 1544 ~v~~~eeLN~~lARseeE~el 1564 (2240)
...++++|+.+|+|+++....
T Consensus 653 ~~~~~~did~il~~~~~~~~~ 673 (1033)
T PLN03142 653 STITDEDIDRIIAKGEEATAE 673 (1033)
T ss_pred CCCCHHHHHHHHHhcHHHHHH
Confidence 457899999999999876643
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-87 Score=818.42 Aligned_cols=473 Identities=42% Similarity=0.668 Sum_probs=406.5
Q ss_pred hccCCCccC-CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 989 VMRQPSMLR-AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 989 v~~qPs~L~-ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
+..||..|. +.+|++||+.||+||.-+|.++++||||||||||||+|+|++++||.+ .+..||+|||||.|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHH
Confidence 556888886 569999999999999999999999999999999999999999999997 667999999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHH-hhcCCcEEEEcHHHHH---HhhhhccccCcceEecccccccCCchhHHHH
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIM---YDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qei-~~~~fdVVITTYE~L~---kD~s~L~kikWd~VIIDEAHrLKN~~SKlsk 1143 (2240)
||.+|||+++|..|+|+.++|+.+...-. ....|+|+||||..+. .|+.+|...+|+|+|.||||.+||..|.+++
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 99999999999999999999988754322 2348999999999886 4688999999999999999999999999999
Q ss_pred HhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCCh-HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR-KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~-~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
.|..+++.+||||||||+||+|.|||+||.|++|.+|.+. ..+...|..--... .+.+...+..+ .|.|...
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d---~d~e~~~l~qe----rIsrAK~ 618 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSD---GDIENALLSQE----RISRAKT 618 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCcc---chhhHHHHHHH----HHHHHHH
Confidence 9999999999999999999999999999999999999765 56666665321111 11111222222 4788999
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
++.||+|||+|.+|++.||+|..++.+|.|+..|+.+|..+......... ....+ .... + .+.+|+||
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~------~~~~n----s~~~-~-~~vlmqlR 686 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLN------EVSKN----SELK-S-GNVLMQLR 686 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcc------ccccc----cccc-c-chHHHHHH
Confidence 99999999999999999999999999999999999999987654311100 01111 0011 1 46899999
Q ss_pred HHcCCCCCCCCCcccc-------------------------------------------------chhhHhhcccHHHHH
Q 000099 1303 KTCNHPLLNYPYFSDL-------------------------------------------------SKDFLVKSCGKLWIL 1333 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~l-------------------------------------------------s~d~LirsSGKLelL 1333 (2240)
+++|||.|+...+.+. -.+..|-.|||+..|
T Consensus 687 K~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L 766 (941)
T KOG0389|consen 687 KAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKL 766 (941)
T ss_pred HHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHH
Confidence 9999999964322110 113357789999999
Q ss_pred HHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCC
Q 000099 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1413 (2240)
Q Consensus 1334 drIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNL 1413 (2240)
..||++++..|+|||||+|||.++|||+.+|..+++.|+||||+|...+|+.+|+.||. +.++|||||||+|||.||||
T Consensus 767 ~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINL 845 (941)
T KOG0389|consen 767 KELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINL 845 (941)
T ss_pred HHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999996 77899999999999999999
Q ss_pred CCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHH
Q 000099 1414 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGL 1493 (2240)
Q Consensus 1414 QaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~ 1493 (2240)
+.||+||+||.++||..+.||.+||||+||+|+|+||+|++ .++|||.
T Consensus 846 t~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLIt--------------------------------k~TIEE~ 893 (941)
T KOG0389|consen 846 TCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLIT--------------------------------KSTIEEG 893 (941)
T ss_pred cccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEe--------------------------------cCcHHHH
Confidence 99999999999999999999999999999999999999987 4899999
Q ss_pred HHHHHHHhhhHHHHHHHhcccc
Q 000099 1494 IRNNIQQYKIDMADEVINAGRF 1515 (2240)
Q Consensus 1494 IlerIqe~KldmddkVIqAGkF 1515 (2240)
|+. +++.|+.++..+...++-
T Consensus 894 I~~-lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 894 ILR-LAKTKLALEADLTEDGKG 914 (941)
T ss_pred HHH-HHHHhhhhhhhhccCccc
Confidence 997 788999988888766553
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.4e-84 Score=795.78 Aligned_cols=469 Identities=33% Similarity=0.585 Sum_probs=407.8
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
..|..+.. .|++||.+||+||+.+|.++.||||+||||||||||+|++|+.|.......+|+|||||.+++.||..||.
T Consensus 197 ~vPg~I~~-~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIWS-KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHHH-HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 45665543 89999999999999999999999999999999999999999999986577799999999999999999999
Q ss_pred HHCCCCeEEEEecchhh-Hh---------HHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhH
Q 000099 1071 KWLPSVSCIYYVGAKDQ-RS---------RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (2240)
Q Consensus 1071 Kw~PslkVvvy~Gskde-Rk---------~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (2240)
+|+|.++|.+|+|+... |. ..+-........+|+||||+.++...+.+..+.|+|||+||+|+|+|++++
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccH
Confidence 99999999999997652 11 010011224556899999999999999999999999999999999999999
Q ss_pred HHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1141 lskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
++.+++.+++.+|++|||||+||+|.|||+||+|+.|+.+++...|.+.|..|+..++...... ........+.-.|
T Consensus 356 islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~---~qv~~aykca~~L 432 (923)
T KOG0387|consen 356 ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASP---RQVQTAYKCAVAL 432 (923)
T ss_pred HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCH---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765444 2333444566789
Q ss_pred HHHhhHHHHHhhhhhhcc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1221 HQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1221 hklLrPFmLRRlKkDVek-dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
+.+|.||+|||+|.||.. .||.|.++|++|.||+.|+.+|..+.+...+. .+... ...+...+.
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~--------~i~ng-------~~~~l~Gi~ 497 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVN--------KILNG-------KRNCLSGID 497 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHH--------HHHcC-------CccceechH
Confidence 999999999999999999 99999999999999999999999886642211 11100 012233467
Q ss_pred HHHHHcCCCCCCCCC--ccccchh--hHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHH-hcCceEEee
Q 000099 1300 ELRKTCNHPLLNYPY--FSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ-WRQLVYRRI 1374 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~--~~~ls~d--~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~-~rGiky~rL 1374 (2240)
-||++||||.+.... ......+ ..+..|||+++|..+|..+...|+|||+|+|.+.|+|+|+.+|. ..||.|+|+
T Consensus 498 iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRm 577 (923)
T KOG0387|consen 498 ILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRM 577 (923)
T ss_pred HHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEe
Confidence 799999999997653 2212222 46789999999999999999999999999999999999999999 799999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1375 DGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
||.|+...|..+|++||. +..++|||++|++||+||||+.||.||||||+|||..+.||..|||||||+|+|.||||++
T Consensus 578 DGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 578 DGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred cCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 999999999999999996 6678999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000099 1455 VVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (2240)
Q Consensus 1455 VEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqA 1512 (2240)
.+||||+|+.+ |=+|..+.+.++..
T Consensus 657 --------------------------------~gTIEEkiY~r-QI~Kq~Ltn~il~~ 681 (923)
T KOG0387|consen 657 --------------------------------AGTIEEKIYHR-QIFKQFLTNRILKN 681 (923)
T ss_pred --------------------------------CCcHHHHHHHH-HHHHHHHHHHHhcC
Confidence 37899999875 67888888888854
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=4.3e-81 Score=786.13 Aligned_cols=487 Identities=33% Similarity=0.556 Sum_probs=421.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
.+||.||++||+|+..++..+++|||||+||||||+|+|++++.-...+. ..-|.|||||.+|..+|+.|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 48999999999999999999999999999999999999999976544321 335889999999999999999999
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccce
Q 000099 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1152 (2240)
Q Consensus 1073 ~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~ 1152 (2240)
+|-++++.|.|.+.+|..+..+ ..+.+|+||+|+.+++|...|.++.|.|+|+||+|-|||..++++++++.+++.+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q---~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~h 1130 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ---YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANH 1130 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh---ccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcc
Confidence 9999999999999999877543 4567999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
||+|||||+||+..|||+||+||+|+++|+.+.|.+.|.+|+........ ...+.+...+.+..||+.+-||||||+
T Consensus 1131 RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~---Sske~EaG~lAleaLHKqVLPF~LRRl 1207 (1549)
T KOG0392|consen 1131 RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKS---SSKEQEAGVLALEALHKQVLPFLLRRL 1207 (1549)
T ss_pred eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCccc---chhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987644332 335677888999999999999999999
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
|.||+++||+|+....+|+|++.|+++|+.+.......++...+......+. ....+...+..|||.||||.+..
T Consensus 1208 KedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt-----~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1208 KEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGT-----DKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCc-----chHHHHHHHHHHHHhcCCcceee
Confidence 9999999999999999999999999999998776333322211111111110 14567788899999999999975
Q ss_pred CC----cccc------chhh--HhhcccHHHHHHHHHHHHH--------------hcCCeEEEEecchhHHHHHHHHHHh
Q 000099 1313 PY----FSDL------SKDF--LVKSCGKLWILDRILIKLQ--------------RTGHRVLLFSTMTKLLDILEEYLQW 1366 (2240)
Q Consensus 1313 p~----~~~l------s~d~--LirsSGKLelLdrIL~kL~--------------atGhKVLIFSQ~t~~LDiLed~L~~ 1366 (2240)
.. +..+ .... -+..++|+..|..||.++- ..+||||||||+..++|++++-|-.
T Consensus 1283 t~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392|consen 1283 TPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred CCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhh
Confidence 42 1100 0111 2678999999999999883 1479999999999999999988765
Q ss_pred c---CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCC
Q 000099 1367 R---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1443 (2240)
Q Consensus 1367 r---Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQ 1443 (2240)
. .+.|.||||+++..+|.+++++||+ |..+.|+|++|.+||+||||++||||||++-||||..++||++|||||||
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQ 1441 (1549)
T KOG0392|consen 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQ 1441 (1549)
T ss_pred hhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcC
Confidence 4 5668999999999999999999997 77889999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHH
Q 000099 1444 KREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1523 (2240)
Q Consensus 1444 KKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eE 1523 (2240)
|+.|.||||++ .|++||+|+. +|++|+++++.||++..-+..+....
T Consensus 1442 KrvVNVyRlIt--------------------------------rGTLEEKVMg-LQkFKmnvAntvInqqNasl~tM~Td 1488 (1549)
T KOG0392|consen 1442 KRVVNVYRLIT--------------------------------RGTLEEKVMG-LQKFKMNVANTVINQQNASLETMDTD 1488 (1549)
T ss_pred ceeeeeeeehh--------------------------------cccHHHHHhh-HHHHhhHHHHHHHhcccccccccCHH
Confidence 99999999976 3899999997 89999999999999988777777766
Q ss_pred HHHHHHH
Q 000099 1524 RRMTLET 1530 (2240)
Q Consensus 1524 Rr~~Le~ 1530 (2240)
....|..
T Consensus 1489 qLLdlF~ 1495 (1549)
T KOG0392|consen 1489 QLLDLFT 1495 (1549)
T ss_pred HHHHHhc
Confidence 6555555
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-64 Score=640.61 Aligned_cols=466 Identities=30% Similarity=0.443 Sum_probs=380.0
Q ss_pred CCCCcHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC----CCeEEEechHHHHHHHH
Q 000099 998 AGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY----GPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~----GP~LIVVP~SLL~QW~~ 1067 (2240)
...|||||.+|+.||..... +..|||+||+||+|||+++|++|+.++...+.+ ...|||||.+||.||.+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkk 315 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKK 315 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHH
Confidence 35899999999999997552 456789999999999999999999999866653 45699999999999999
Q ss_pred HHHHHCC--CCeEEEEecchhhH----hHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHH
Q 000099 1068 ELHKWLP--SVSCIYYVGAKDQR----SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1141 (2240)
Q Consensus 1068 Ef~Kw~P--slkVvvy~GskdeR----k~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKl 1141 (2240)
||.+|.. .+....+.|..+.. ..++.........-|+|.+|+.+.++...+....+++||+||+|++||..+.+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 9999986 46777777766541 11111112223346899999999999999999999999999999999999999
Q ss_pred HHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1142 skaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
+++|..+.+++||+|||||+||++.|+|++|+|++|+++++...|...|..|+.........+.+... + .-+..|.
T Consensus 396 ~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~---~rl~eL~ 471 (776)
T KOG0390|consen 396 LKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-E---ERLQELR 471 (776)
T ss_pred HHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-H---HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876554433222111 2 2278899
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
.++..|++||+-..+.++||.+.+++|.|.+++.|..+|+.+.... .. .. ........+..|
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-------~~----------~~~~~l~~~~~L 533 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-------RT----------LKGYALELITKL 533 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-------hh----------hhcchhhHHHHH
Confidence 9999999999999999999999999999999999999999887642 10 00 001134567789
Q ss_pred HHHcCCCCCCCC-Ccc-----ccc-----------h-hhHhhcccHHHHHHHHHHHHHhc-CCeEEEEecchhHHHHHHH
Q 000099 1302 RKTCNHPLLNYP-YFS-----DLS-----------K-DFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEE 1362 (2240)
Q Consensus 1302 RKICNHP~L~~p-~~~-----~ls-----------~-d~LirsSGKLelLdrIL~kL~at-GhKVLIFSQ~t~~LDiLed 1362 (2240)
+++||||.|... ... ... . ..-...++|+..|+.+|...++. -.++++.++++.++|+++.
T Consensus 534 ~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~ 613 (776)
T KOG0390|consen 534 KKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQ 613 (776)
T ss_pred HHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHH
Confidence 999999998631 000 000 0 01123479999999998665543 4567777889999999999
Q ss_pred HHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccC
Q 000099 1363 YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1363 ~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIG 1442 (2240)
.++++|+.+++|||+|+..+|+.+|+.||++.+..||||+|++|||+||||.+|++||+||++|||+.+.||++||||.|
T Consensus 614 ~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 614 LCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred HHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCcc
Q 000099 1443 QKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 1518 (2240)
Q Consensus 1443 QKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~k 1518 (2240)
|+|.|+||+|++ .++|||.|+.+ |-.|.-+...|++...-..+
T Consensus 694 QKk~v~iYrLla--------------------------------tGtiEEk~~qr-q~~K~~lS~~v~~~~~~~~~ 736 (776)
T KOG0390|consen 694 QKKPVYIYRLLA--------------------------------TGTIEEKIYQR-QTHKEGLSSMVFDEEEDVEK 736 (776)
T ss_pred CcceEEEEEeec--------------------------------CCCchHHHHHH-HHHhhhhhheEEeccccccc
Confidence 999999999987 25677777664 45555555555555443333
No 11
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-62 Score=642.82 Aligned_cols=470 Identities=40% Similarity=0.635 Sum_probs=400.9
Q ss_pred cCCCCCcHHHHHHHHHHH-HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHHHHHHHHHHHHHC
Q 000099 996 LRAGTLRDYQIVGLQWML-SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAVLVNWKSELHKWL 1073 (2240)
Q Consensus 996 L~ggtLRPYQleGLqwLl-sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~SLL~QW~~Ef~Kw~ 1073 (2240)
...++|++||.+|++|+. .++....+|||||+||+|||+|+|+++.++++.... .+|+|||||.+++.||.+||.+|+
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334689999999999999 899999999999999999999999999987665554 689999999999999999999999
Q ss_pred CCCe-EEEEecchhh----HhHHHHHHHhh---cCCcEEEEcHHHHHH---hhhhccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVS-CIYYVGAKDQ----RSRLFSQEVAA---LKFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 Pslk-Vvvy~Gskde----Rk~l~~qei~~---~~fdVVITTYE~L~k---D~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
|.++ +.+++|.... +..+ ...... ..++|++|||+.+.. +...+..+.|+++|+||||++||..+..+
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~ 492 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREAL-RDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEG 492 (866)
T ss_pred ccccceeeeeCCcccccHHHHHH-HHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHH
Confidence 9999 9999998753 2222 111111 238999999999999 99999999999999999999999999999
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHh-hhcccccC-ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLN-LLLPEVFD-NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLn-FLlP~iF~-S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
+++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..++........ .+.....+.+|
T Consensus 493 ~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~l 565 (866)
T COG0553 493 KALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-------LEARELGIELL 565 (866)
T ss_pred HHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-------hhhHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 558999999999877643321 12223345669
Q ss_pred HHHhhHHHHHhhhhh--hccCCCCceEEEEEeccCHHHHHHHHHHHHcc---CcccCchhHHhhhhcChhhHHH--HHHH
Q 000099 1221 HQILEPFMLRRRVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG---TLRVDPEDEKRRVQKNPIYQAK--VYKT 1293 (2240)
Q Consensus 1221 hklLrPFmLRRlKkD--VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~---~l~ld~~~e~~~l~~~~~~~ak--~~~s 1293 (2240)
+.++.||++||+|.+ +..+||++.+.++.|.|+..|..+|..+.... ...+.... ......... ....
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 640 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLE-----KADSDENRIGDSELN 640 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccccccccchhhH
Confidence 999999999999999 89999999999999999999999999886632 11100000 000000000 1456
Q ss_pred HHHHHHHHHHHcCCCCCCCCC-cc---------------ccchhhHhhcc-cHHHHHHHHH-HHHHhcCC--eEEEEecc
Q 000099 1294 LNNRCMELRKTCNHPLLNYPY-FS---------------DLSKDFLVKSC-GKLWILDRIL-IKLQRTGH--RVLLFSTM 1353 (2240)
Q Consensus 1294 L~nilmqLRKICNHP~L~~p~-~~---------------~ls~d~LirsS-GKLelLdrIL-~kL~atGh--KVLIFSQ~ 1353 (2240)
+.+.++.||++|+||.++... .. ......++..| +|+..++++| ..+...++ |||||++|
T Consensus 641 ~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~ 720 (866)
T COG0553 641 ILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQF 720 (866)
T ss_pred HHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCc
Confidence 788999999999999998765 11 11123456778 9999999999 89999999 99999999
Q ss_pred hhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHH
Q 000099 1354 TKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433 (2240)
Q Consensus 1354 t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~Q 1433 (2240)
+.++++|+.+|...++.|+++||+++.+.|..++++|+++ ..++|||+|++|||.||||+.|++||+||++|||..+.|
T Consensus 721 t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Q 799 (866)
T COG0553 721 TPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQ 799 (866)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHH
Confidence 9999999999999999999999999999999999999985 678999999999999999999999999999999999999
Q ss_pred HhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000099 1434 AVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (2240)
Q Consensus 1434 AiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqA 1512 (2240)
|++|+|||||+++|.||++++ .++|||+|+. ++..|..+...++++
T Consensus 800 a~dRa~RigQ~~~v~v~r~i~--------------------------------~~tiEe~i~~-~~~~K~~l~~~~~~~ 845 (866)
T COG0553 800 AIDRAHRIGQKRPVKVYRLIT--------------------------------RGTIEEKILE-LQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHhcCcceeEEEEeec--------------------------------CCcHHHHHHH-HHHHHHHHHHHHhhh
Confidence 999999999999999999976 3799999998 578899999999986
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=4.4e-62 Score=598.88 Aligned_cols=552 Identities=24% Similarity=0.374 Sum_probs=412.6
Q ss_pred hhhhccCCCccCCCCCcHHHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHH-HHhCCCCCeEE
Q 000099 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLM-EFKGNYGPHLI 1055 (2240)
Q Consensus 986 ~e~v~~qPs~L~ggtLRPYQleGLqwLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Ll-e~kg~~GP~LI 1055 (2240)
.+.....|..|.. .|+|||..||+||+... ..+.|||||+-||||||+|+|+|+..++ ..+-....+||
T Consensus 655 ~e~~VqV~rslv~-kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLv 733 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVI-KLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALV 733 (1567)
T ss_pred ccchhhccHhHHh-hcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEE
Confidence 3455566766654 89999999999999644 2578899999999999999999886654 44556779999
Q ss_pred EechHHHHHHHHHHHHHCCCC------eEEEEe--cchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh-------------
Q 000099 1056 IVPNAVLVNWKSELHKWLPSV------SCIYYV--GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------------- 1114 (2240)
Q Consensus 1056 VVP~SLL~QW~~Ef~Kw~Psl------kVvvy~--GskdeRk~l~~qei~~~~fdVVITTYE~L~kD------------- 1114 (2240)
|||.+++.||..||.+|.+++ .|..+. ..+..|..++..+ ...-.|+|+-|++++..
T Consensus 734 V~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W--~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke 811 (1567)
T KOG1015|consen 734 VCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRW--QEDGGVMIIGYDMYRNLAQGRNVKSRKLKE 811 (1567)
T ss_pred EcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHH--HhcCCEEEEehHHHHHHhcccchhhhHHHH
Confidence 999999999999999999863 222221 2233444433322 33448999999998642
Q ss_pred --hhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000099 1115 --RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (2240)
Q Consensus 1115 --~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~k 1192 (2240)
...|..-..|+||+||||.|||..+.+++++..+++.+||+|||||+||||.|++++++|+.|+++++...|...|..
T Consensus 812 ~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvN 891 (1567)
T KOG1015|consen 812 IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVN 891 (1567)
T ss_pred HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcC
Confidence 122344478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC
Q 000099 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272 (2240)
Q Consensus 1193 Pf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld 1272 (2240)
||.++...+....+..-. ..-.+.|+.+|.-|+-|+--.-+.+.||||.++||.+.||+.|..||.+++.+.... .
T Consensus 892 pI~nGq~~dST~~DVr~M---k~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~-G 967 (1567)
T KOG1015|consen 892 PIQNGQCADSTMVDVRVM---KKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGV-G 967 (1567)
T ss_pred ccccCccCCCcHHHHHHH---HHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcccc-C
Confidence 999987665544322111 122466899999999999888888999999999999999999999999998843221 1
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC------------------Cc---c---------------
Q 000099 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------------------YF---S--------------- 1316 (2240)
Q Consensus 1273 ~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p------------------~~---~--------------- 1316 (2240)
...+. . ...-+.|+....-|++|.+||+...- +. .
T Consensus 968 ~d~eg-----~----~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~ 1038 (1567)
T KOG1015|consen 968 NDSEG-----G----RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKK 1038 (1567)
T ss_pred Ccccc-----c----cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhc
Confidence 11110 0 11234566677789999999986110 00 0
Q ss_pred ---------cc------------------------------------c-------------------------------h
Q 000099 1317 ---------DL------------------------------------S-------------------------------K 1320 (2240)
Q Consensus 1317 ---------~l------------------------------------s-------------------------------~ 1320 (2240)
+. . .
T Consensus 1039 ~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d 1118 (1567)
T KOG1015|consen 1039 KKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEAD 1118 (1567)
T ss_pred ccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhh
Confidence 00 0 0
Q ss_pred hhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh----------------------cCceEEeecCCC
Q 000099 1321 DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----------------------RQLVYRRIDGTT 1378 (2240)
Q Consensus 1321 d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~----------------------rGiky~rLDGsT 1378 (2240)
......|||+.+|.+||..+.+-|.|+|||+|....+|+|++||.. +|..|.+|||++
T Consensus 1119 ~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst 1198 (1567)
T KOG1015|consen 1119 AEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGST 1198 (1567)
T ss_pred hhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcc
Confidence 0124568999999999999999999999999999999999999963 267799999999
Q ss_pred CHHHHHHHHHHHhcCC-CCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHH
Q 000099 1379 SLEDRESAIVDFNSHD-SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVD 1457 (2240)
Q Consensus 1379 s~eEReeaIk~FNs~D-s~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEE 1457 (2240)
+...|..+.+.||++. -..++|||||+||++||||-+|+.|||||-.|||.-+.|+|-|++|.||+|+|+||+|++
T Consensus 1199 ~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA--- 1275 (1567)
T KOG1015|consen 1199 TSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA--- 1275 (1567)
T ss_pred cHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh---
Confidence 9999999999999864 457899999999999999999999999999999999999999999999999999999976
Q ss_pred HhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHHhh---
Q 000099 1458 KISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD--- 1534 (2240)
Q Consensus 1458 kI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LLe~--- 1534 (2240)
.|++|++|+++ |-.|..++-.|++.......-+.+ .|..|+.=
T Consensus 1276 -----------------------------qGTmEeKIYkR-QVTKqsls~RVVDeqQv~Rhy~~n----eLteLy~fep~ 1321 (1567)
T KOG1015|consen 1276 -----------------------------QGTMEEKIYKR-QVTKQSLSFRVVDEQQVERHYTMN----ELTELYTFEPD 1321 (1567)
T ss_pred -----------------------------cccHHHHHHHH-HHhHhhhhhhhhhHHHHHHHhhHh----hhHHHhhcCCc
Confidence 36777777775 456666666666543321111111 22222221
Q ss_pred --hhhhhccccCCCCHHHHHHHHhcCHHHHHHHHhhhhhhCc--chhhhccccchHHHhh
Q 000099 1535 --EERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGW--IEEMTRYDQVPKWLRA 1590 (2240)
Q Consensus 1535 --ee~~~e~~~~v~~~eeLN~~lARseeE~elf~~mD~er~~--~~~l~~~~evP~~lr~ 1590 (2240)
+...+......+.+..+.+++.-..+-+--+-..|.-+.- .++++..+.-|.|.-+
T Consensus 1322 ~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ehdSll~~~e~eelteee~k~aWaey 1381 (1567)
T KOG1015|consen 1322 LDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHEHDSLLDHKEEEELTEEERKAAWAEY 1381 (1567)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHhhhhhhhhhhhcchhHHHHHHHhhhhhhhhH
Confidence 1111112234556666666666555444444444433322 2345666777888754
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=8.2e-61 Score=562.98 Aligned_cols=464 Identities=32% Similarity=0.452 Sum_probs=375.1
Q ss_pred hhccCCCccCCCCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
+-.+||.-|. ..|-|||++||.|+..... .-.|||||||||.|||||+|+|++. .....|+|||||.-.+.||.
T Consensus 173 e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~ 247 (791)
T KOG1002|consen 173 ERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWK 247 (791)
T ss_pred hcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHH
Confidence 3457898876 4899999999999997665 4568899999999999999999875 23456899999999999999
Q ss_pred HHHHHHCC-CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh-----------------hhhccccCcceEec
Q 000099 1067 SELHKWLP-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD-----------------RSKLSKVDWKYIII 1128 (2240)
Q Consensus 1067 ~Ef~Kw~P-slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD-----------------~s~L~kikWd~VII 1128 (2240)
+||.+++. .+++++|+|.+.... .....+++||+|||..+-.. .+.|..++|..||+
T Consensus 248 nEI~~~T~gslkv~~YhG~~R~~n-----ikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIl 322 (791)
T KOG1002|consen 248 NEIERHTSGSLKVYIYHGAKRDKN-----IKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIIL 322 (791)
T ss_pred HHHHHhccCceEEEEEecccccCC-----HHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeeh
Confidence 99999984 589999999764431 12356899999999877432 45688899999999
Q ss_pred ccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCCh-------------------------
Q 000099 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------------- 1183 (2240)
Q Consensus 1129 DEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------------------------- 1183 (2240)
||||.||+..|...+++..+.+.+||.|||||+||++.|||+|+.||....|.-+
T Consensus 323 DEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h 402 (791)
T KOG1002|consen 323 DEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSH 402 (791)
T ss_pred hhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccc
Confidence 9999999999999999999999999999999999999999999999977765311
Q ss_pred --H----HHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhcc--CCCCceEEEEEeccCHH
Q 000099 1184 --K----AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAI 1255 (2240)
Q Consensus 1184 --~----sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVek--dLP~KvE~vV~c~LS~~ 1255 (2240)
. -|...+.+|+...|...- ........|.+|..+||||+|-+-.. .|||.+..+-.-.++..
T Consensus 403 ~~m~h~~~~n~~mlk~IqkfG~eGp----------Gk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~e 472 (791)
T KOG1002|consen 403 NIMQHTCFFNHFMLKPIQKFGVEGP----------GKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEE 472 (791)
T ss_pred hhhhhhhhhcccccccchhhcccCc----------hHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhH
Confidence 0 011122244444432211 12234467889999999999876544 38999999988889999
Q ss_pred HHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC-----------------cccc
Q 000099 1256 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-----------------FSDL 1318 (2240)
Q Consensus 1256 Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~-----------------~~~l 1318 (2240)
+..+|+.+........+...+...+. ..|..+...+.+||+.+.||+|+.-. ..+.
T Consensus 473 E~D~YeSLY~dSkrkfntyieeGvvl-------NNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ 545 (791)
T KOG1002|consen 473 EKDLYESLYKDSKRKFNTYIEEGVVL-------NNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDP 545 (791)
T ss_pred HHHHHHHHHHhhHHhhhhHHhhhhhh-------hhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCCh
Confidence 99999988665443333333332222 34788999999999999999984210 0000
Q ss_pred chh-----------------------------------------------------------------hHhhcccHHHHH
Q 000099 1319 SKD-----------------------------------------------------------------FLVKSCGKLWIL 1333 (2240)
Q Consensus 1319 s~d-----------------------------------------------------------------~LirsSGKLelL 1333 (2240)
..+ .-+..|.|++.|
T Consensus 546 aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL 625 (791)
T KOG1002|consen 546 AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEAL 625 (791)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHH
Confidence 000 025567899999
Q ss_pred HHHHHHHHhcC--CeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccC
Q 000099 1334 DRILIKLQRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1411 (2240)
Q Consensus 1334 drIL~kL~atG--hKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGL 1411 (2240)
.+-|..+.+.. -|.|||+|||.++|+|.-.|...|+.++.|.|+|+...|...|+.|.. +.+|+|||+|.+|||..|
T Consensus 626 ~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVAL 704 (791)
T KOG1002|consen 626 VEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVAL 704 (791)
T ss_pred HHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEe
Confidence 98888887654 589999999999999999999999999999999999999999999986 889999999999999999
Q ss_pred CCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHH
Q 000099 1412 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIE 1491 (2240)
Q Consensus 1412 NLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIE 1491 (2240)
||+.|..|+++||||||....||++|+|||||.++|+|++|+. .++||
T Consensus 705 NLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i--------------------------------EnsiE 752 (791)
T KOG1002|consen 705 NLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI--------------------------------ENSIE 752 (791)
T ss_pred eechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh--------------------------------hccHH
Confidence 9999999999999999999999999999999999999999963 27999
Q ss_pred HHHHHHHHHhhhHHHHHHHhc
Q 000099 1492 GLIRNNIQQYKIDMADEVINA 1512 (2240)
Q Consensus 1492 E~IlerIqe~KldmddkVIqA 1512 (2240)
++|++ +|++|.+|....|+.
T Consensus 753 ~kIie-LQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 753 EKIIE-LQEKKANMIHATIGQ 772 (791)
T ss_pred HHHHH-HHHHHhhhhhhhcCC
Confidence 99997 889998888877764
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.2e-59 Score=564.69 Aligned_cols=468 Identities=26% Similarity=0.422 Sum_probs=379.8
Q ss_pred hccCCCccCCCCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH
Q 000099 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA 1060 (2240)
Q Consensus 989 v~~qPs~L~ggtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~S 1060 (2240)
+++.|..+. ..|.|||..++.||+.... .+.||||||+||||||+..|++|..-.... ....++|||||.+
T Consensus 315 lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 315 LTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred ccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 345676664 4899999999999997654 456889999999999999999997654321 1223699999999
Q ss_pred HHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHH----------hhhhccccCcceEec
Q 000099 1061 VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY----------DRSKLSKVDWKYIII 1128 (2240)
Q Consensus 1061 LL~QW~~Ef~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~k----------D~s~L~kikWd~VII 1128 (2240)
++.||..||.+... .+.|++|||... | .+- ......||||||||..+.. ....|..+.|.+||+
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~-r-~i~--~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVIL 469 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK-R-EIS--AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVIL 469 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc-c-cCC--HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhh
Confidence 99999999999874 489999999874 1 221 2235689999999998876 245688899999999
Q ss_pred ccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000099 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (2240)
Q Consensus 1129 DEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l 1208 (2240)
||||.++|+.++.+.++..+.+.+||+|||||++|++-|+|+|+.||.-..|++...|.+|+..+-..+
T Consensus 470 DEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----------- 538 (901)
T KOG4439|consen 470 DEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----------- 538 (901)
T ss_pred hhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999986542221
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhcc-----CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCc----------
Q 000099 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEG-----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP---------- 1273 (2240)
Q Consensus 1209 ~~Ee~~lii~RLhklLrPFmLRRlKkDVek-----dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~---------- 1273 (2240)
..||.-+..+.||||+|..+-. .||.+...++.+.|+..+...|+-+.......+..
T Consensus 539 --------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~ 610 (901)
T KOG4439|consen 539 --------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNN 610 (901)
T ss_pred --------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3466777899999999998766 79999999999999999999998664321111100
Q ss_pred --h--hHHhhh---------------hcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccc-----------------
Q 000099 1274 --E--DEKRRV---------------QKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD----------------- 1317 (2240)
Q Consensus 1274 --~--~e~~~l---------------~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~----------------- 1317 (2240)
. ...... .....+.......++-.+++||++|+||.+....++.
T Consensus 611 ~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e 690 (901)
T KOG4439|consen 611 DGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLE 690 (901)
T ss_pred ccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhh
Confidence 0 000000 0000111223344778899999999999552211100
Q ss_pred -----------------cc-----------hhhHhhcccHHHHHHHHHHHH-HhcCCeEEEEecchhHHHHHHHHHHhcC
Q 000099 1318 -----------------LS-----------KDFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368 (2240)
Q Consensus 1318 -----------------ls-----------~d~LirsSGKLelLdrIL~kL-~atGhKVLIFSQ~t~~LDiLed~L~~rG 1368 (2240)
.. .....+.|.|+..+..+|..+ .....|++|.+||+.++++++..|...|
T Consensus 691 ~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g 770 (901)
T KOG4439|consen 691 EDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG 770 (901)
T ss_pred hhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC
Confidence 00 001244678999888888887 5678999999999999999999999999
Q ss_pred ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1369 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1369 iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+.|..++|.+..++|+.+++.||...+..+|+|||.-|||.||||..|+++|++|..|||+.+.||.+|++|+||+|+|+
T Consensus 771 ~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 771 HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1449 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1449 VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
||+|+. .++||++|.. +|++|++++.-|+.+.
T Consensus 851 IhR~~~--------------------------------~gTvEqrV~~-LQdkKldlA~~VL~G~ 882 (901)
T KOG4439|consen 851 IHRLMC--------------------------------KGTVEQRVKS-LQDKKLDLAKGVLTGS 882 (901)
T ss_pred EEEEEe--------------------------------cCcHHHHHHH-HHHHHHHHHhhhccCc
Confidence 999976 3899999987 8999999999999853
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=498.92 Aligned_cols=482 Identities=32% Similarity=0.466 Sum_probs=365.7
Q ss_pred CCCcHHHHHHHHHHHH-------hh--cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLS-------LY--NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (2240)
Q Consensus 999 gtLRPYQleGLqwLls-------L~--~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (2240)
..|+|||+-||.||.. .| ..+.|||||+.||||||+|+|+++--++. .-..+.+|+|||..+|.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHHHHh
Confidence 3699999999998863 22 25788999999999999999999987775 44567899999999999999999
Q ss_pred HHHCCC-----------CeEEEEecch---hhHhHHHHHHHhhcCCcEEEEcHHHHHHh---------------------
Q 000099 1070 HKWLPS-----------VSCIYYVGAK---DQRSRLFSQEVAALKFNVLVTTYEFIMYD--------------------- 1114 (2240)
Q Consensus 1070 ~Kw~Ps-----------lkVvvy~Gsk---deRk~l~~qei~~~~fdVVITTYE~L~kD--------------------- 1114 (2240)
..|.|. +.+.++.... +.|.++..++ ...-.|+++-|++++-.
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~W--v~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~ 409 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQW--VQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSG 409 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHH--hccCCEEEehHHHHHHHHHhcccccCCccccccccCCc
Confidence 999874 3444443322 3444444333 34557999999987532
Q ss_pred -----------------hhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcc
Q 000099 1115 -----------------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1177 (2240)
Q Consensus 1115 -----------------~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP 1177 (2240)
.+.|.+-..|+||+||+|||||....++.+|+.+++++||.|||-|+||+|-|.|++++|+.|
T Consensus 410 ~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP 489 (1387)
T KOG1016|consen 410 FIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRP 489 (1387)
T ss_pred ccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccc
Confidence 112333357999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHH
Q 000099 1178 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQS 1257 (2240)
Q Consensus 1178 ~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr 1257 (2240)
+.+++..+|...|.+|+.++...+..-++.. ...+..+.||.+|..|+-||.-.-+...||.+.|+++.+.||..|+
T Consensus 490 ~yLGTR~eF~nmFErPI~NGQCvDStPdDvk---lmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR 566 (1387)
T KOG1016|consen 490 KYLGTRKEFINMFERPIKNGQCVDSTPDDVK---LMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQR 566 (1387)
T ss_pred cccchHHHHHHHhhccccCCccccCChhHHH---HHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHH
Confidence 9999999999999999999877766554432 2234567899999999999999888889999999999999999999
Q ss_pred HHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc----------------------
Q 000099 1258 AIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF---------------------- 1315 (2240)
Q Consensus 1258 ~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~---------------------- 1315 (2240)
.+|+.+..... +.+..+... .+.- +..+.-..||.|||.+.|..+
T Consensus 567 ~LY~~Fm~d~~---------r~~~~~~~~---~~NP-LkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~ 633 (1387)
T KOG1016|consen 567 QLYRNFMLDAK---------REIAANNDA---VFNP-LKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQ 633 (1387)
T ss_pred HHHHHHHHHHH---------Hhhcccccc---ccCh-HHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccc
Confidence 99987642211 100000000 0000 011122344455654321100
Q ss_pred ----------------------------------------cccch-----------------hhHhhcccHHHHHHHHHH
Q 000099 1316 ----------------------------------------SDLSK-----------------DFLVKSCGKLWILDRILI 1338 (2240)
Q Consensus 1316 ----------------------------------------~~ls~-----------------d~LirsSGKLelLdrIL~ 1338 (2240)
.+... .-+...+.|+.++..++.
T Consensus 634 ~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~d 713 (1387)
T KOG1016|consen 634 QQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILD 713 (1387)
T ss_pred ccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeec
Confidence 00000 001222334444444555
Q ss_pred HHHhcCCeEEEEecchhHHHHHHHHHHhc------------------CceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1339 kL~atGhKVLIFSQ~t~~LDiLed~L~~r------------------Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
+-..-|.++|||++....+|.|+++|..+ +..|+++||.++..+|+++|++||++-+-...|
T Consensus 714 es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlf 793 (1387)
T KOG1016|consen 714 ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLF 793 (1387)
T ss_pred cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeee
Confidence 55556899999999999999999999866 245899999999999999999999854444589
Q ss_pred EEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhh
Q 000099 1401 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDL 1480 (2240)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl 1480 (2240)
||||++|..||||-.|+.||+||..|||..+.||++|++|+||+|+|+||+|+.
T Consensus 794 llstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm-------------------------- 847 (1387)
T KOG1016|consen 794 LLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM-------------------------- 847 (1387)
T ss_pred eehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh--------------------------
Confidence 999999999999999999999999999999999999999999999999999965
Q ss_pred cccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHHhhhh
Q 000099 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1536 (2240)
Q Consensus 1481 ~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LLe~ee 1536 (2240)
-.++|..|+.+ +=.|..|.+.|++.-.-+..-+ +..++.|+...+
T Consensus 848 ------D~~lEkkIydR-QIsKqGmsdRvVDd~np~an~s----~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 848 ------DNSLEKKIYDR-QISKQGMSDRVVDDANPDANIS----QKELENLLMYDE 892 (1387)
T ss_pred ------hhhhHHHHHHH-HHhhccchhhhhcccCcccccc----HHHHHHHhhhhh
Confidence 25788888876 4568888888887654443333 345677776543
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1e-50 Score=532.51 Aligned_cols=411 Identities=19% Similarity=0.234 Sum_probs=296.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkV 1078 (2240)
..|.|||+..+.+++..+ ..+.||||||||||||++++++.+++. .+..+|+|||||.+|+.||..|+.+||. +.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-LRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CCe
Confidence 369999999998876543 456799999999999999999888775 6677899999999999999999998874 444
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhccccCcceEecccccccCCc---hhHHHHHhhcc--cc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY--RC 1150 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~L--ks 1150 (2240)
.++.+........ ........++++|+||+++.++. ..+....|++|||||||++++. .++.++.+..+ ++
T Consensus 227 ~i~~~~~~~~~~~-~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 227 SLFDEERYAEAQH-DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred EEEcCcchhhhcc-cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 5554432111000 00012235789999999998753 4566779999999999999953 46678888777 57
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC--Cc-------ccCCCCCCCChhhHHH-----------
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ--PF-------QKEGPTHNADDDWLET----------- 1210 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~k--Pf-------~~~g~~~~~e~d~l~~----------- 1210 (2240)
+++|+|||||++|+..|+|++|+||+|+.|++...|.+.... ++ .............+..
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 799999999999999999999999999999999999765432 11 0111000000000000
Q ss_pred -----------HHHHHHHHHHHHH--hhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHH
Q 000099 1211 -----------EKKVIIIHRLHQI--LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK 1277 (2240)
Q Consensus 1211 -----------Ee~~lii~RLhkl--LrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~ 1277 (2240)
.....++..|... ...+|+|+++.+|.. +|.+..+.+.+++.+.....+.....
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~~~~~~~------------ 452 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTAIKVSLE------------ 452 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHHHHHhHH------------
Confidence 0001111111111 136788999999864 89999999998887653333321000
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHH
Q 000099 1278 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL 1357 (2240)
Q Consensus 1278 ~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~L 1357 (2240)
..++. |.+|-..+..+. .....+..+.|++.|..+|..+. +.||||||++..++
T Consensus 453 ---------------------~~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~ 506 (956)
T PRK04914 453 ---------------------ARARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATA 506 (956)
T ss_pred ---------------------HHHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHH
Confidence 00000 011100000000 00011234679999998887653 78999999999999
Q ss_pred HHHHHHH-HhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhh
Q 000099 1358 DILEEYL-QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1436 (2240)
Q Consensus 1358 DiLed~L-~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiG 1436 (2240)
+.|.+.| ...|+++..|||+++..+|.++++.|+++++.+. |||||++||+||||+.|++||+||+||||..|+||+|
T Consensus 507 ~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIG 585 (956)
T PRK04914 507 LQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIG 585 (956)
T ss_pred HHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhc
Confidence 9999999 5679999999999999999999999997554555 5788899999999999999999999999999999999
Q ss_pred hhhccCCcceEEEEEEeh
Q 000099 1437 RAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1437 RAhRIGQKKeV~VyrLvT 1454 (2240)
|+||+||++.|.||+++.
T Consensus 586 R~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 586 RLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred ccccCCCCceEEEEEccC
Confidence 999999999999998854
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-49 Score=464.41 Aligned_cols=418 Identities=27% Similarity=0.345 Sum_probs=315.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv 1079 (2240)
.|.|||++||.+.+. .+.++|||||||||||+|||++..|... .+|.|||||.++...|..+|.+|+|.+..+
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 699999999999885 5666799999999999999998887664 469999999999999999999999987552
Q ss_pred -EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc--ccceEEEe
Q 000099 1080 -YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLL 1156 (2240)
Q Consensus 1080 -vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L--ks~~RLLL 1156 (2240)
+..+..+.- ........|.|.||+.+......|..-+|.+||+||+|++|+..++..+++.-+ ...+.|||
T Consensus 271 ~vv~~~~D~~------~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPL------PDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCc------cccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEe
Confidence 223332221 011223469999999999999999998999999999999999999999988866 67899999
Q ss_pred ecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh-HHHHHhhhhh
Q 000099 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFMLRRRVED 1235 (2240)
Q Consensus 1157 TGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr-PFmLRRlKkD 1235 (2240)
||||.-..+.|||.++..+++.+|.+..+|-..|...-...-..+ . .+.....+|+-+|. -.|+||+|.+
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D-y--------kg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD-Y--------KGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee-c--------CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888776643211110000 0 00112335666664 4599999999
Q ss_pred hccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 000099 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1315 (2240)
Q Consensus 1236 VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~ 1315 (2240)
|+++||+|...++.+ ....+-...+.+.....-... . ..|+-.+.|.- ++
T Consensus 416 vL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t~---------~--------------~~~e~~~~~l~--l~---- 465 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADYTK---------V--------------NSMERKHESLL--LF---- 465 (689)
T ss_pred HHhhCCccceEEEEE-cCCccchHHHHHHHHhhhcch---------h--------------hhhhhhhHHHH--HH----
Confidence 999999996655543 233333333333221110000 0 00000111100 00
Q ss_pred cccchhhHhhcccHHHHHHHHHHH----HHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1316 SDLSKDFLVKSCGKLWILDRILIK----LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1316 ~~ls~d~LirsSGKLelLdrIL~k----L~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
+-...-.|+....+.|.. ..+.+.|+||||....++|-|..++..+++.++||||+|+..+|..+++.|+
T Consensus 466 ------y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ 539 (689)
T KOG1000|consen 466 ------YSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ 539 (689)
T ss_pred ------HHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc
Confidence 000112233333333333 3456889999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccC
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSG 1471 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~ 1471 (2240)
. +.++.|-+||..|+|.||+|++|+.|||..++|||...+||.+|+|||||+..|.|+||++
T Consensus 540 ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvA----------------- 601 (689)
T KOG1000|consen 540 T-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVA----------------- 601 (689)
T ss_pred c-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEe-----------------
Confidence 6 6789999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHH
Q 000099 1472 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509 (2240)
Q Consensus 1472 gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkV 1509 (2240)
++++++.+...++ .|+++...+
T Consensus 602 ---------------KgT~Ddy~Wp~l~-~KL~vl~s~ 623 (689)
T KOG1000|consen 602 ---------------KGTADDYMWPMLQ-QKLDVLGSV 623 (689)
T ss_pred ---------------cCchHHHHHHHHH-HHHHHHhhc
Confidence 4789999998764 467655444
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=6.7e-50 Score=503.79 Aligned_cols=388 Identities=40% Similarity=0.617 Sum_probs=344.4
Q ss_pred ccCCCccC--CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 990 MRQPSMLR--AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 990 ~~qPs~L~--ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
..+|..+. ++.|.+||.+|++|+...+..+-.+|||||||+|||++++.++..++......+|+||++|.+++.+|..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 46787776 5899999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHH-------------------HhhcCCcEEEEcHHHHHHhhhhccccCcceEec
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQE-------------------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIII 1128 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qe-------------------i~~~~fdVVITTYE~L~kD~s~L~kikWd~VII 1128 (2240)
|+.-|+|.+.++.|.|+.+.|.-+.... .....|+|.+++|+++..+...+..+.|.++|+
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~liv 442 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIV 442 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEe
Confidence 9999999999999999988765442111 134578999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000099 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (2240)
Q Consensus 1129 DEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l 1208 (2240)
||+|+++|..+++.+.+..+...++++|||||++|++.+|+++|+||.|+.|++...|.+.|..-
T Consensus 443 de~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~--------------- 507 (696)
T KOG0383|consen 443 DEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI--------------- 507 (696)
T ss_pred echhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------
Confidence 99999999999999999999999999999999999999999999999999999988888776421
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHH
Q 000099 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288 (2240)
Q Consensus 1209 ~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~a 1288 (2240)
.....+..||.++.|++|||+|.||.+.+|.|.+.++.+.|+..|+.+|+.++......+.. .
T Consensus 508 ---~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--------------~ 570 (696)
T KOG0383|consen 508 ---SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--------------G 570 (696)
T ss_pred ---hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--------------c
Confidence 11234788999999999999999999999999999999999999999999987654222111 0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHH
Q 000099 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1363 (2240)
Q Consensus 1289 k~~~sL~nilmqLRKICNHP~L~~p~~~~-----ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~ 1363 (2240)
..--.+.|++|+|||+|+|||++...... .....++..++|+.+|..+++++...|||||||+||+.++|+|+++
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~ 650 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDY 650 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHH
Confidence 12346789999999999999998652111 1234578999999999999999999999999999999999999999
Q ss_pred HHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccc
Q 000099 1364 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1410 (2240)
Q Consensus 1364 L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeG 1410 (2240)
|...+ .|.|+||..+..+|+.+|++||.+++.-||||+||+|||+|
T Consensus 651 ~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 651 LTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999 99999999999999999999999999999999999999998
No 19
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-49 Score=499.58 Aligned_cols=917 Identities=28% Similarity=0.229 Sum_probs=674.8
Q ss_pred CCCCccccccCCCCCCcccccccCccCcchHHHHHHHHhhhhcchHHHHhhcCCCcc-hhhhhcccCCCCcccCCCCCCC
Q 000099 8 SRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPDGN-EAILAYQVGSLPGLMGGGNFAS 86 (2240)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (2240)
..+++.|+++|+++.+..+..+.++- +..|+++. +|+.-..-|+|.++..++| +...+|++|+.++|+++++|.+
T Consensus 14 ~~~~~~s~~~a~~~~sr~~~l~~~~~---~~~~~~~~-q~q~~~~~q~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 89 (1157)
T KOG0386|consen 14 PAGRTRSTISALSPLSRSSPLQQQQQ---QAVQQQQP-QQQLASRQQQQQHRPLDTNLENMFAYQPGGVQLMMGGGNFLS 89 (1157)
T ss_pred ccchhHHHHHhhhhhhhcCCCchhhH---HHHhhhhh-hhhhccHHHHhccCCCCCCcccccccCCCchhhccccccccC
Confidence 34777788888876665554443210 01111110 1111123366778888999 8899999999999999999999
Q ss_pred CCCCCCCCcchhhhhhHHhhhhhhhhccccccc-----cccccccHHHHHHHHHHHHHHhhhhhhHhHHhhhh--hcCCC
Q 000099 87 PPGSMQPPQQSRKFFDFAQQHAISQESQNRSQG-----VEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAK--LGMLG 159 (2240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 159 (2240)
+|++|++|+++|.||...++.+..+.-.+..++ .-++..|++|++|+|++++++.|+. |+++. |||++
T Consensus 90 ~p~~~~~~~~~r~~~~sp~~~~~~q~~~~~~~~~~~~~l~~~~~~~~q~~~i~~~~~~~lq~~-----q~~~~~~~~~~~ 164 (1157)
T KOG0386|consen 90 SPGSMQMPQQSRNFFESPQQPQQQQQQGSSTQEGKITPLDQQNINPMQQARIQFRMQAQLQEL-----QQLARSLMGELK 164 (1157)
T ss_pred CCCcccccCCCcccccCCCchhhhcccccccCcCccccCCcccccHHHHHHHHHHHHHHHHHH-----HHhhhcchHHHh
Confidence 999999999999999988765444443333333 4578999999999999999999887 77777 99999
Q ss_pred CCC-CcchhhhccchhhHHhhhhhhhhhhhhccCCCCch--hhhchhhhccCcccc----CccccCCCCCCCCCCcCccC
Q 000099 160 PAS-GKDQDMRMGNLKMQELISMQSANQAQASSSKNSSE--QFGRGEKQMEQPQQQ----VSDQKGEPKPPSQQTLGGQG 232 (2240)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 232 (2240)
.++ ++|++.||+++.||.. ....++-.++++++.+-. .|.|++.|+++.--. --.||.|.+.- ..+..+++
T Consensus 165 ~~a~~e~~~lrl~~~q~qlr-~~~~~~~~~~~~~~~~~n~~~~~R~~~q~~~~~r~te~Le~qqr~e~erk-~r~~~~~~ 242 (1157)
T KOG0386|consen 165 SSAVGEDQALRLLMLQMQLR-NPVSQPLRRDSSSETALNPKAFKRGKRQTLSEARLTEKLEKQQRLETERK-RRVKHGQF 242 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHh-hhhhcccccccccccccCHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 887 9999999999999987 344445567778877777 899999998887611 11233322211 56677999
Q ss_pred CCCccccccchhhHHhHHhhhhcchhHHHHHH---HHHHHhccCCCCCcccHhHHHHHhHhHHHHHHhhcccccCCCCCC
Q 000099 233 MAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAP 309 (2240)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2240)
|++++++|++.++.|+..+|+++++.+.++|| ++|+++++||.++++|++.|.+ .-|.+|.++.++.+.+..++
T Consensus 243 l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~---~DeE~Y~kl~dq~Kd~Rl~~ 319 (1157)
T KOG0386|consen 243 LPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKH---NDEEGYRKLQDQKKDNRLSQ 319 (1157)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH---hhHHHHHHHHhhccccHHHH
Confidence 99999999999999999999999999999999 7799999999999999888776 46779999999999999999
Q ss_pred CCCCCCCCccccccCccCCCC--CCCCCCCCccCCCCCCCCC---CCCCCCCCCCCcccccccccchhhcccccccCcCC
Q 000099 310 SSPVPVSKQQVTSPTIAGENS--PHANSSSDVSGQSGSAKAR---PTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDN 384 (2240)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (2240)
.-..+.+....-+.+|-.+.+ +|+++.+|++++++.+|++ .......+-++..+-+.+ ..+|.+++.|++.
T Consensus 320 LL~qt~~yl~sL~s~Vk~qk~~~~~~~~~~d~~~i~~~ak~~~~d~~~s~~~Yys~AH~I~E~----v~~Qps~l~GG~L 395 (1157)
T KOG0386|consen 320 LLSQTDSYLPSLSSVVKGQKSENPDANSASDISGISGSAKADVDDHAESNGSYYSTAHPIKEN----VAKQPSSLQGGEL 395 (1157)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccchhhhhhhhhhhhcchhhhhhhcchhHHHhcchhhhc----cccCcchhcCCCC
Confidence 999888888777777878887 9999999999999999999 666666666776666555 3479999999986
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCchhhHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 000099 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPV--KNSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGG 462 (2240)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (2240)
..-....+---++++.-|+.+-.+.-+ ++....-+ .-.---|..+|+-.++++-+.+.....++++.--+- +...-
T Consensus 396 k~YQl~GLqWmVSLyNNnLNGILADEM-GLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaP-Sv~~i 473 (1157)
T KOG0386|consen 396 KEYQLHGLQWMVSLYNNNLNGILADEM-GLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAP-SVQKI 473 (1157)
T ss_pred chhhhhhhHHHhhccCCCcccccchhc-ccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccc-ceeee
Confidence 554444444445555556666554431 22211100 111234666777777787777777777776654441 01111
Q ss_pred CCCCCCcccCCcchhHHHHHHHHHHHhhccccCCCCChHHHHHhcCCCccccccccccccccccccccCCCCCCcchhhh
Q 000099 463 LATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQ 542 (2240)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (2240)
.-.+.|+.|.||+++|+| .|.++|+|++.+.+. +.+||..|.+++...+ ++....++...-.+...+ --..+
T Consensus 474 ~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiik---dk~lLsKI~W~yMIID---EGHRmKNa~~KLt~~L~t-~y~~q 545 (1157)
T KOG0386|consen 474 QYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIK---DKALLSKISWKYMIID---EGHRMKNAICKLTDTLNT-HYRAQ 545 (1157)
T ss_pred eeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcC---CHHHHhccCCcceeec---ccccccchhhHHHHHhhc-cccch
Confidence 222778999999999999 999999999999988 9999999999998888 777777777766666655 45566
Q ss_pred hcccccCCcccccccccCCCCCcccccccCCCCCccCC-CccCCcccc--CCCccccCCCCccccCCcc-cccChhhhhh
Q 000099 543 LRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSP-VGQGMSAVT--KEPAPVVVPGKEEQQAPVS-SVKSDQEVEC 618 (2240)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 618 (2240)
.|-++.++ .+|.--.-++..+...+....+...+-.. .-+.+.+.. .+-......-+.++...++ +++..+.+..
T Consensus 546 ~RLLLTGT-PLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 546 RRLLLTGT-PLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhcCC-hhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 77777776 66665555566666665555544333322 111222222 2222222233344555566 8888888888
Q ss_pred cccccccccCCCCCCCCccCC--CCCccccccccCCCCCccCCCCCCcccccccCCCCCCCCccccccCCCCccccccCC
Q 000099 619 GLLRTQQQSDFPADRGKSVAP--QVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSS 696 (2240)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~~~~~~~~k~~~~~~~~~~~~~ 696 (2240)
.-+..| |-..+.+|.+.+ |..-+ +.....+..+.|.+..+.|.++|++++.+.||+..-+.. ..|-+
T Consensus 625 VE~~LP---dKve~viKC~mSalQq~lY-------~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~l-f~~ve 693 (1157)
T KOG0386|consen 625 VEQELP---DKVEDVIKCDMSALQQSLY-------KQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYL-FANVE 693 (1157)
T ss_pred HhhhCc---hhhhHhhheehhhhhHhhh-------HHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchh-hhhhc
Confidence 888877 455556665543 22222 233334445667777899999999999999999988444 21456
Q ss_pred CCcccccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 000099 697 NNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEI 776 (2240)
Q Consensus 697 ~~~~~~~d~~~~~~~~~~~~~~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~q~~lr~~~~~~~~~~ 776 (2240)
.+...-+|+.+|+...++.-+-.+++--|+.....+......+++.+.+...+.++-+++..|+-|-+.+++.. +.+.
T Consensus 694 ~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~--ll~~ 771 (1157)
T KOG0386|consen 694 NSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD--LLEI 771 (1157)
T ss_pred cccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH--HHHH
Confidence 77778888899999999987777788888888887777777788889999999999999999999999999887 6777
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhh
Q 000099 777 MAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILRE-FSK 855 (2240)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~-~~k 855 (2240)
..+|++.|..|...|.+.++.+-.|........+.+....+..|+++..|.+|..++.+..+..+|.++|++++++ +.|
T Consensus 772 FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~K 851 (1157)
T KOG0386|consen 772 FNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYK 851 (1157)
T ss_pred hcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHh
Confidence 8899999999999998888888777655555555666667888999999999999999999999999999999988 778
Q ss_pred hhhHHHHHHHHHhhhchHHHHHHHHHHhhcCCCcc----hHHHHHHHHHhHhhhHH---HHHHhhhhhHHhhhhHH----
Q 000099 856 RKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGD----AAERYAVLSSFLTQTEE---YLYKLGSKITAAKNQQE---- 924 (2240)
Q Consensus 856 r~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d----~~~r~~~l~~LL~qte~---~l~~l~~~v~~~k~~q~---- 924 (2240)
...+.+-.++.++.+++.+.|++++.++....+++ ...+++.|..+|.++|+ |+++|+......++.+.
T Consensus 852 l~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~r 931 (1157)
T KOG0386|consen 852 LDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPR 931 (1157)
T ss_pred cCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccch
Confidence 88888888999999999999999987765555554 55577789999999999 99999988876666555
Q ss_pred -HHHHHHHHHHHHHhcC---CCHHHHH----HHHHhhhhhHHhhhhhccc
Q 000099 925 -VEEAANAAAAAARLQG---LSEEEVR----SAAACAGEEVMIRNRFLEM 966 (2240)
Q Consensus 925 -~~~~~~~~~~~~r~~g---l~~ee~~----~~~~~~~ee~~i~~~f~e~ 966 (2240)
+++....+....+..+ +++++.. ....|...++.+.+.+.++
T Consensus 932 l~ee~e~p~~i~~~~~~~~~~~~~~~~~~~~~rg~r~Rkev~y~d~~te~ 981 (1157)
T KOG0386|consen 932 LVEEAELPADIYKRDQGVERLSEEEEEEKILGRGRRARKEVVYSDRLTEM 981 (1157)
T ss_pred hhhhhhcHHHHHhcchhhhhhhhhhhhhccccccccccceeecccccchh
Confidence 4554444444445444 3433333 2223444455555544443
No 20
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.4e-44 Score=456.71 Aligned_cols=443 Identities=30% Similarity=0.442 Sum_probs=349.9
Q ss_pred HHHHHHHHHHHHhh-cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHHHHHHHHHHCC-
Q 000099 1003 DYQIVGLQWMLSLY-NNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVNWKSELHKWLP- 1074 (2240)
Q Consensus 1003 PYQleGLqwLlsL~-~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~SLL~QW~~Ef~Kw~P- 1074 (2240)
.+|..+..|+-... ..-.+||+||+||+|||+++|++++....... ..+..|||||.+++.+|..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 44444444443332 23467899999999999999999876543222 45678999999999999999966654
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceE
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR 1153 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~R 1153 (2240)
.+.+.+|+| |.+. ......++||||||..+.. ..+..+.|..||+||||.++|..++.++++..+.+.+|
T Consensus 215 ~~l~v~v~~g----r~kd---~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~R 285 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKD---KSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYR 285 (674)
T ss_pred cceEEEEecc----cccc---cchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeecccee
Confidence 467888888 1111 2234577899999999865 56677999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000099 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (2240)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlK 1233 (2240)
|.|||||+||++.|||+++.|+.-..|.....|...+..|+..+.. .....++..+|.++++||+|
T Consensus 286 WcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------------~~~~k~l~~~L~~v~lrrtK 351 (674)
T KOG1001|consen 286 WCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------------KEGVKTLQGILKKVMLRRTK 351 (674)
T ss_pred eeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------------HHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999988888765411 23467888999999999988
Q ss_pred hhh-----ccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1234 EDV-----EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1234 kDV-----ekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
..- .-.||++...++.|.++..++.+|..+............... .....|..+.-.+.+||++|+||
T Consensus 352 ~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~-------~~~~~Y~~~l~~lLrlrq~c~h~ 424 (674)
T KOG1001|consen 352 EMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEG-------TVSSTYAFFLKNLLRLRQACDHS 424 (674)
T ss_pred cccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhc-------hhhhhHHHHHHHHHHHHHHccch
Confidence 632 236999999999999999999999988765433222111111 11234667777888999999999
Q ss_pred CCCCCCccc-----------------c-----------chhhHhh-----------------------------------
Q 000099 1309 LLNYPYFSD-----------------L-----------SKDFLVK----------------------------------- 1325 (2240)
Q Consensus 1309 ~L~~p~~~~-----------------l-----------s~d~Lir----------------------------------- 1325 (2240)
+++...... + ....++.
T Consensus 425 ~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 425 LLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred HhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 874311000 0 0000011
Q ss_pred ---------------cccHHHHHHHHHHHHHhcCC-eEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1326 ---------------SCGKLWILDRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1326 ---------------sSGKLelLdrIL~kL~atGh-KVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
.+.|+..+..+|........ ++|||||++.++++++..|...++.+.+++|.++...|.+.+..
T Consensus 505 ~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~ 584 (674)
T KOG1001|consen 505 LSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTD 584 (674)
T ss_pred hhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcc
Confidence 13455555555554333333 99999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhc
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELR 1469 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~l 1469 (2240)
|+ .+..+.|+|+|.+|||.||||+.|++||++|++|||..+.||++|+|||||+++|.|++|+.
T Consensus 585 ~~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i--------------- 648 (674)
T KOG1001|consen 585 FP-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFII--------------- 648 (674)
T ss_pred cc-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehh---------------
Confidence 99 58889999999999999999999999999999999999999999999999999999999954
Q ss_pred cCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHH
Q 000099 1470 SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509 (2240)
Q Consensus 1470 s~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkV 1509 (2240)
.++||++|++ +++.|..+.+..
T Consensus 649 -----------------~dtveer~l~-iq~~K~~~~~~a 670 (674)
T KOG1001|consen 649 -----------------KDTVEERILK-IQEKKREYNASA 670 (674)
T ss_pred -----------------hhccHHHHHH-HHHHHHHHHhhh
Confidence 4799999997 788888776544
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=8e-40 Score=380.62 Aligned_cols=280 Identities=37% Similarity=0.685 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC--CCeEEEechHHHHHHHHHHHHH
Q 000099 1004 YQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--GPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 1004 YQleGLqwLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~--GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
||+.||.||+..+ ....+||||||||+|||+++++++.++....... .++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788899999999999999999999887644333 3699999999999999999999
Q ss_pred C-C-CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHH-----HhhhhccccCcceEecccccccCCchhHHHHHh
Q 000099 1073 L-P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM-----YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1073 ~-P-slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~-----kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
+ + .+++++|.|....+... ......++|+|+||+.+. .....+..++|++|||||+|+++|..+..+.++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS---KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT---SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccccccccccccccccccc---ccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 68888888876222211 223567899999999999 667788888999999999999999999999999
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
..+.+.++|+|||||+.|++.|||.+++||.|..+.+...|.++|..+ ..........+|..++.
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~~L~~~l~ 222 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------------DKENSYENIERLRELLS 222 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------------HHTHHHHHHHHHHHHHC
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------------ccccccccccccccccc
Confidence 999999999999999999999999999999999999999999988544 22233445788999999
Q ss_pred HHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
+|++||+++|+...||+..+.++.|+|++.|+.+|+.+.......+.... .........+...+.+||++|
T Consensus 223 ~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~lr~~c 293 (299)
T PF00176_consen 223 EFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS---------RKKSKKLSSLLQILKRLRQVC 293 (299)
T ss_dssp CCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T-----------TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHHHHHh
Confidence 99999999999889999999999999999999999988665433332211 111235678889999999999
Q ss_pred CCCCC
Q 000099 1306 NHPLL 1310 (2240)
Q Consensus 1306 NHP~L 1310 (2240)
+||+|
T Consensus 294 ~hp~l 298 (299)
T PF00176_consen 294 NHPYL 298 (299)
T ss_dssp H-THH
T ss_pred CCccc
Confidence 99986
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-35 Score=378.11 Aligned_cols=333 Identities=18% Similarity=0.281 Sum_probs=243.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--C
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--P 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--P 1074 (2240)
..+|||||.++|.++.. .....+|||+++||+|||++++++++.+ .+++|||||.. ++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 35899999999998863 1112579999999999999999888754 25899999977 5899999999997 3
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----------hhhccccCcceEecccccccCCchhHHHHH
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----------~s~L~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
...+..|.|..... ......|+|+||+++..+ ...|....|++||+||||++.+ ....+.
T Consensus 326 ~~~I~~~tg~~k~~--------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~i 395 (732)
T TIGR00603 326 DSQICRFTSDAKER--------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRV 395 (732)
T ss_pred CceEEEEecCcccc--------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHH
Confidence 45666777754321 123468999999998643 2345566899999999999954 345556
Q ss_pred hhccccceEEEeecCCCCCCHHHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000099 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPLQNnL~ELwSLLnFL-lP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhkl 1223 (2240)
+..+.+.+||+|||||++++ +.+..+++| .|.+|.- .|.+ +
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~e----------------------------------L 437 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWME----------------------------------L 437 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHHH----------------------------------H
Confidence 77788999999999999877 334444443 3443310 0100 0
Q ss_pred hhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000099 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (2240)
Q Consensus 1224 LrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRK 1303 (2240)
+. .+.|.+.....|+|+|++.....|.. ... .. +. .|
T Consensus 438 i~-----------~G~LA~~~~~ev~v~~t~~~~~~yl~--~~~--------~~--------------k~------~l-- 474 (732)
T TIGR00603 438 QK-----------KGFIANVQCAEVWCPMTPEFYREYLR--ENS--------RK--------------RM------LL-- 474 (732)
T ss_pred Hh-----------CCccccceEEEEEecCCHHHHHHHHH--hcc--------hh--------------hh------HH--
Confidence 00 12355666678999999865444421 100 00 00 00
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHH
Q 000099 1304 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (2240)
Q Consensus 1304 ICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eER 1383 (2240)
++ ....|+..+..++......++++||||.++..++.+...| +. ..|+|.|+..+|
T Consensus 475 ~~-------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER 530 (732)
T TIGR00603 475 YV-------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQER 530 (732)
T ss_pred hh-------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHH
Confidence 00 1235888888888876678999999999999988888877 33 458999999999
Q ss_pred HHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcce-----EEEEEEeh
Q 000099 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE-----VKVIYMEA 1454 (2240)
Q Consensus 1384 eeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKe-----V~VyrLvT 1454 (2240)
.+++++|+.+ +.+. +|+++++|++||||+.|++||++++++ |+..++||+||+.|.+.++. +.+|.|++
T Consensus 531 ~~il~~Fr~~-~~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 531 MQILQNFQHN-PKVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred HHHHHHHHhC-CCcc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 9999999852 2334 466669999999999999999999986 99999999999999997765 67788876
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7e-33 Score=365.28 Aligned_cols=431 Identities=19% Similarity=0.194 Sum_probs=267.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Ps-- 1075 (2240)
.++|+||.+.+..++. .|+||+++||+|||++++.++..++. ...+++|||||+ .++.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3789999999988764 28999999999999999988887763 345799999998 5888999999988743
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHh---hcccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDL---DRYRC 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaL---k~Lks 1150 (2240)
..++++.|......+ ...+...+|+|+|++.+..+. ..+....|++|||||||++.+..+..+.+- ...+.
T Consensus 87 ~~v~~~~g~~~~~~r----~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEKR----AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHHH----HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 477778875433221 122346799999999998763 334455799999999999986544332211 12245
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.++++|||||..+ ...+..+++.|....+..+..|...+...+... ...|.... .......++.+|..++.+
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~------~v~~~~v~-l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKV------KIEWVRVE-LPEELKEIRDLLNEALKD 234 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccc------eeEEEEeC-CcHHHHHHHHHHHHHHHH
Confidence 6699999999766 566666666664333222222221111111100 00000000 001234567777777777
Q ss_pred hhhhhhcc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchh---HHhhhhcC-hhhHHHHHHHHHHHHHHHHHHc
Q 000099 1231 RRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED---EKRRVQKN-PIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1231 RlKkDVek-dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~---e~~~l~~~-~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
+++..... .++.....+....+...+..++..+............ ....+... ..........+...+..++..+
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 76654322 1222222222333344444444443221100000000 00000000 0000000111222222222222
Q ss_pred CCCCCCCC---Ccccc-------chhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCceEEe
Q 000099 1306 NHPLLNYP---YFSDL-------SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (2240)
Q Consensus 1306 NHP~L~~p---~~~~l-------s~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGiky~r 1373 (2240)
.++..... .+.+. ....+....+|+..|.++|.++. ..+.||||||++..+++.|.++|...|+.+..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 11100000 00000 00111234689999999999876 57899999999999999999999999999999
Q ss_pred ecCC--------CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1374 IDGT--------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1374 LDGs--------Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
++|. ++..+|..++++|+.++.+ +|++|+++++|+|++.|++||+||++||+..++||.||++|.|+
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-- 469 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-- 469 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC--
Confidence 9987 8889999999999976544 68999999999999999999999999999999999999999876
Q ss_pred eEEEEEEeh
Q 000099 1446 EVKVIYMEA 1454 (2240)
Q Consensus 1446 eV~VyrLvT 1454 (2240)
+.||.|++
T Consensus 470 -~~v~~l~~ 477 (773)
T PRK13766 470 -GRVVVLIA 477 (773)
T ss_pred -CEEEEEEe
Confidence 44555543
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.1e-28 Score=295.90 Aligned_cols=418 Identities=20% Similarity=0.218 Sum_probs=257.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--Ps 1075 (2240)
.+-|.||...+...+. .|.+++.+||||||++|+.++++.+...+ |.+|+++|+. |+.|...-|.+++ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3689999999888775 48999999999999999999987665333 4899999965 8999999999986 55
Q ss_pred CeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchh--HHHHHhhccc
Q 000099 1076 VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR 1149 (2240)
Q Consensus 1076 lkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~S--KlskaLk~Lk 1149 (2240)
..++.+.|.. ++|. ..+.+.+|+|.|++.+.+|. ..+...++.+||+|||||.-...+ -+.+......
T Consensus 87 ~~i~~ltGev~p~~R~------~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 87 DEIAALTGEVRPEERE------ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred hheeeecCCCChHHHH------HHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 7888888864 3443 33567799999999999884 456666899999999999865333 2333333334
Q ss_pred -cceEEEeecCCCCCCHHHHHHHHhhhcccccC----ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1150 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD----NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1150 -s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~----S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
..+.|+||||| -++...+-..++-|.-+-.- ...+...+... ... ... .. ..-++...+...|..+|
T Consensus 161 k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~-~kv----e~i-kV-~lp~e~~~ir~~l~~~l 232 (542)
T COG1111 161 KNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKK-IKV----EWI-KV-DLPEEIKEIRDLLRDAL 232 (542)
T ss_pred cCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhcc-cee----EEE-ec-cCcHHHHHHHHHHHHHH
Confidence 44789999999 56677777777766443211 00111111110 000 000 00 00112223455566666
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC-chhHHhhhhc-----C-----hhhHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD-PEDEKRRVQK-----N-----PIYQAKVYKT 1293 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld-~~~e~~~l~~-----~-----~~~~ak~~~s 1293 (2240)
+|.+-. +++- -.....++. .++.+............. .......+.. + .....-+...
T Consensus 233 ~~~Lk~-L~~~--------g~~~~~~~~--~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~ 301 (542)
T COG1111 233 KPRLKP-LKEL--------GVIESSSPV--SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRP 301 (542)
T ss_pred HHHHHH-HHHc--------CceeccCcc--cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 654321 2211 011111111 122222221000000000 0000000000 0 0000001122
Q ss_pred HHHHHHHHHHHcCCCCC-------CCCCcccc-----chhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHH
Q 000099 1294 LNNRCMELRKTCNHPLL-------NYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDI 1359 (2240)
Q Consensus 1294 L~nilmqLRKICNHP~L-------~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDi 1359 (2240)
+.+-+.+|..-|..-.. ..+++... .....-...+|++.|..||.+.. ..+.|||||++|+++++.
T Consensus 302 ~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~ 381 (542)
T COG1111 302 FYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEE 381 (542)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHH
Confidence 22223333333322000 00000000 00111123579999999999987 567899999999999999
Q ss_pred HHHHHHhcCceEE-eecC--------CCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhh
Q 000099 1360 LEEYLQWRQLVYR-RIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430 (2240)
Q Consensus 1360 Led~L~~rGiky~-rLDG--------sTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~ 1430 (2240)
|.++|...|+... ++-| +|++++..++|+.|+.++.+ +|++|.+|.+|||++++|.|||||+.-++..
T Consensus 382 i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR 458 (542)
T COG1111 382 IVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIR 458 (542)
T ss_pred HHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHH
Confidence 9999999988875 6655 59999999999999986655 7999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCcceEEEEEEeh
Q 000099 1431 EEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1431 d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.+||.||++|- +.-+||.|++
T Consensus 459 ~IQR~GRTGR~---r~Grv~vLvt 479 (542)
T COG1111 459 SIQRKGRTGRK---RKGRVVVLVT 479 (542)
T ss_pred HHHhhCccccC---CCCeEEEEEe
Confidence 99999999995 3334444443
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=4e-28 Score=306.53 Aligned_cols=336 Identities=17% Similarity=0.204 Sum_probs=228.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--C
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--P 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--P 1074 (2240)
.++||+||.+++..++. +.+|||..+||+|||++++.++.+++. ...+++|||||+. |+.||..+|.+|. +
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 35899999999987765 567899999999999988776665554 2334899999975 8899999999986 3
Q ss_pred CCeE-EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-ccce
Q 000099 1075 SVSC-IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQR 1152 (2240)
Q Consensus 1075 slkV-vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~ 1152 (2240)
...+ .++.|... ....+|+|+|++.+.+....+ ...|++|||||||++... .+...+..+ ++.+
T Consensus 186 ~~~~~~i~~g~~~-----------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~ 251 (501)
T PHA02558 186 REAMHKIYSGTAK-----------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIITKLDNCKF 251 (501)
T ss_pred ccceeEEecCccc-----------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHHhhhccce
Confidence 3333 34444321 134689999999998654322 137899999999999753 344555666 5778
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
+++|||||..... ..+.++.++.|-.. .. . ...++
T Consensus 252 ~lGLTATp~~~~~-~~~~~~~~fG~i~~---------------~v------~---------------~~~li-------- 286 (501)
T PHA02558 252 KFGLTGSLRDGKA-NILQYVGLFGDIFK---------------PV------T---------------TSQLM-------- 286 (501)
T ss_pred EEEEeccCCCccc-cHHHHHHhhCCceE---------------Ee------c---------------HHHHH--------
Confidence 9999999954332 12222222211110 00 0 00000
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
+ ...+.+.....+.+..+......+ .... +.. .+.
T Consensus 287 -~--~g~l~~~~~~~v~~~~~~~~~~~~---------------------~~~~-----~~~------~~~---------- 321 (501)
T PHA02558 287 -E--EGQVTDLKINSIFLRYPDEDRVKL---------------------KGED-----YQE------EIK---------- 321 (501)
T ss_pred -h--CCCcCCceEEEEeccCCHHHhhhh---------------------cccc-----hHH------HHH----------
Confidence 0 011222222333333332111000 0000 000 001
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs 1392 (2240)
.+.....+..++..++..+...++++||||..+.+++.|.+.|...|+.+..++|+++.++|..+++.|+.
T Consensus 322 ---------~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~ 392 (501)
T PHA02558 322 ---------YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG 392 (501)
T ss_pred ---------HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC
Confidence 11122345566667777777788999999999999999999999999999999999999999999999985
Q ss_pred CCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc-eEEEEEEeh
Q 000099 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (2240)
Q Consensus 1393 ~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (2240)
....|+|.|++.+++|+|++.+|+||+++|+.+...++|++||++|.+..| .|.||.++.
T Consensus 393 --~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 393 --GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred --CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 344566666699999999999999999999999999999999999998776 588898853
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=6.2e-28 Score=300.57 Aligned_cols=349 Identities=21% Similarity=0.278 Sum_probs=253.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Psl 1076 (2240)
..+||+||.+++.-++..+.....||+..+||.|||+.++.++..+.. .+|||||.. ++.||.+.+.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 458999999999888776665888999999999999999998877653 499999976 7899998888887654
Q ss_pred -eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHhhccccce-
Q 000099 1077 -SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR- 1152 (2240)
Q Consensus 1077 -kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~- 1152 (2240)
.+..+.|..... ....|+|+||+++.+.. ..+...+|++||+|||||+.....+. .+..+...+
T Consensus 108 ~~~g~~~~~~~~~----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~--~~~~~~~~~~ 175 (442)
T COG1061 108 DEIGIYGGGEKEL----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR--ILELLSAAYP 175 (442)
T ss_pred cccceecCceecc----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH--HHHhhhcccc
Confidence 445555543221 11579999999998863 44555589999999999997544332 344455555
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
+|+|||||...+...+..++.++.|-++.- ..
T Consensus 176 ~LGLTATp~R~D~~~~~~l~~~~g~~vy~~------------------------------------------------~~ 207 (442)
T COG1061 176 RLGLTATPEREDGGRIGDLFDLIGPIVYEV------------------------------------------------SL 207 (442)
T ss_pred eeeeccCceeecCCchhHHHHhcCCeEeec------------------------------------------------CH
Confidence 999999997665444444444443322210 00
Q ss_pred hhhhc-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1233 VEDVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1233 KkDVe-kdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
+..+. +.|.+.....+++.++......|..........+.. ....-.....
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~---------- 259 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA------------------RGTLRAENEA---------- 259 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh------------------hhhhhHHHHH----------
Confidence 11111 357788888899988888888776443221000000 0000000001
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
.........|+..+..++.... .+.++||||......+.|...|...++ +..++|.++..+|..+++.|+
T Consensus 260 --------~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 260 --------RRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred --------HHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 1112234567778888887766 789999999999999999999998888 889999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhc-cCCcceEEEEEEe
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQKREVKVIYME 1453 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhR-IGQKKeV~VyrLv 1453 (2240)
.++ ..+|++++++.+|+|++.|+++|+..+.-++..|.|++||+.| ...++.+.++.+.
T Consensus 330 ~g~---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 330 TGG---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred cCC---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 865 3479999999999999999999999999999999999999999 5556666555543
No 27
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.95 E-value=1e-27 Score=308.62 Aligned_cols=275 Identities=27% Similarity=0.418 Sum_probs=202.2
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHH---------------HhCCCCCeEEEechHHHHHHHHHHHHHCCCC-eE
Q 000099 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLME---------------FKGNYGPHLIIVPNAVLVNWKSELHKWLPSV-SC 1078 (2240)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle---------------~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl-kV 1078 (2240)
.+..+..+++||+||+|||+..+++...-.- .....|.+|||||++++.||-.||.+++++. ++
T Consensus 370 ~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv 449 (1394)
T KOG0298|consen 370 DKKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKV 449 (1394)
T ss_pred CccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceE
Confidence 3445566799999999999998887643210 0113478999999999999999999999876 99
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----------------------hhccccCcceEecccccccCC
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----------------------SKLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----------------------s~L~kikWd~VIIDEAHrLKN 1136 (2240)
+.|.|-.... +.......++|||||||..++.+. +.|..+.|..||||||+-+..
T Consensus 450 ~~Y~Girk~~---~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 450 LLYFGIRKTF---WLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred EEEechhhhc---ccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 9999965432 122345678999999999997652 235556899999999999999
Q ss_pred chhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000099 1137 RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216 (2240)
Q Consensus 1137 ~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~li 1216 (2240)
..|..++.+..+.+.++|..||||+++ +.+|+.||+||.-..|+....|.+.+..++... ..
T Consensus 527 ssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------------a~ 588 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------------AK 588 (1394)
T ss_pred hHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------------hh
Confidence 999999999999999999999999999 999999999999999999999988776554332 12
Q ss_pred HHHHHHHhhHHHHHhhhhhhcc--CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhH--Hh----hhhcChhhHH
Q 000099 1217 IHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE--KR----RVQKNPIYQA 1288 (2240)
Q Consensus 1217 i~RLhklLrPFmLRRlKkDVek--dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e--~~----~l~~~~~~~a 1288 (2240)
-..+++++...+.|+.+-+|+. .+|+..+.+....+++.+..+|+..-..-........+ .. ..........
T Consensus 589 ~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~ 668 (1394)
T KOG0298|consen 589 CEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSP 668 (1394)
T ss_pred hhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCCh
Confidence 2357778888899999988876 47888888888888888877775331110000000000 00 0001111222
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC
Q 000099 1289 KVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1289 k~~~sL~nilmqLRKICNHP~L 1310 (2240)
-....+.+.+.+||++|+||..
T Consensus 669 ~~~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 669 QLLAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred hhHHHHHHHHHHHHHhhccccc
Confidence 3456778888999999999865
No 28
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=3.5e-26 Score=291.54 Aligned_cols=316 Identities=20% Similarity=0.243 Sum_probs=217.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-HHHHHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa-~Lle~k----g~~GP~LIVVP~S-LL~QW~~Ef~Kw~ 1073 (2240)
++.|+|..++..++. +.+.|+..+||+|||++++..+. .+.... +....+|||||+. |+.||..++.+|.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 689999999988776 77899999999999999866443 333211 1123479999987 6788999999987
Q ss_pred CC--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhc
Q 000099 1074 PS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (2240)
Q Consensus 1074 Ps--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~ 1147 (2240)
.. +++.+.+|......+.. ......+|+|+|++.|..... .+...++.+|||||||+|.... ..+.+.+..
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~---~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIY---ALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred cccCccEEEEeCCCCHHHHHH---HHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 53 55666666544333321 223467999999998875532 2233468899999999997643 234445555
Q ss_pred ccc-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 YRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 Lks-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
+.. ...|++|||.- .++-.+...+.. ..++....
T Consensus 305 ~~~~~q~l~~SAT~p----~~v~~l~~~l~~-------------~~~v~i~v---------------------------- 339 (545)
T PTZ00110 305 IRPDRQTLMWSATWP----KEVQSLARDLCK-------------EEPVHVNV---------------------------- 339 (545)
T ss_pred CCCCCeEEEEEeCCC----HHHHHHHHHHhc-------------cCCEEEEE----------------------------
Confidence 543 45788999941 111111110000 00000000
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
..+...........+.
T Consensus 340 -------g~~~l~~~~~i~q~~~--------------------------------------------------------- 355 (545)
T PTZ00110 340 -------GSLDLTACHNIKQEVF--------------------------------------------------------- 355 (545)
T ss_pred -------CCCccccCCCeeEEEE---------------------------------------------------------
Confidence 0000000000000000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
.+....|...|..+|..+...+.++||||+....++.|...|...|+.+..+||+++.++|..+
T Consensus 356 ----------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 356 ----------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWV 419 (545)
T ss_pred ----------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHH
Confidence 0111235556666676666578899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++.|+++... +||+|+++++|||++++++||+||+|+++..|+||+||++|.|.+..+..|
T Consensus 420 l~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 420 LNEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred HHHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 9999976555 799999999999999999999999999999999999999999988766544
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1.1e-25 Score=281.46 Aligned_cols=311 Identities=18% Similarity=0.257 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---Ps 1075 (2240)
++.|+|.+++..++. +.+.|+..+||+|||.+++..+...+........+|||||+. |..||..++.+++ ++
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 688999999998875 778999999999999987776666554333334689999976 6788998888764 56
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhcccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC- 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lks- 1150 (2240)
+++..++|+.....+. .......+|+|+|++.+..... .+.-.++++|||||||+|.+.. ..+...+..+..
T Consensus 102 ~~v~~~~Gg~~~~~~~---~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~ 178 (460)
T PRK11776 102 IKVLTLCGGVPMGPQI---DSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPAR 178 (460)
T ss_pred cEEEEEECCCChHHHH---HHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcc
Confidence 8888888876544332 2223678999999999976532 2333468999999999987543 234444445543
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
...|++|||+-. ++-.+...+ +..|....
T Consensus 179 ~q~ll~SAT~~~----~~~~l~~~~--------------~~~~~~i~--------------------------------- 207 (460)
T PRK11776 179 RQTLLFSATYPE----GIAAISQRF--------------QRDPVEVK--------------------------------- 207 (460)
T ss_pred cEEEEEEecCcH----HHHHHHHHh--------------cCCCEEEE---------------------------------
Confidence 457999999621 111111100 00000000
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
-......+......+.+
T Consensus 208 ---~~~~~~~~~i~~~~~~~------------------------------------------------------------ 224 (460)
T PRK11776 208 ---VESTHDLPAIEQRFYEV------------------------------------------------------------ 224 (460)
T ss_pred ---ECcCCCCCCeeEEEEEe------------------------------------------------------------
Confidence 00000000000111110
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
....|+..|..+|.. ....++||||+....++.+.+.|...++.+..+||+++..+|..+++.|
T Consensus 225 --------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 225 --------------SPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred --------------CcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 001144555555543 2356899999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+++... +||+|+++++|||++++++||+||.|.++..|+||+||++|.|....+.++
T Consensus 289 ~~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 289 ANRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL 345 (460)
T ss_pred HcCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEE
Confidence 976555 799999999999999999999999999999999999999999987665544
No 30
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=6.5e-26 Score=280.46 Aligned_cols=317 Identities=22% Similarity=0.280 Sum_probs=231.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechHH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNAV-LVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~------kg~~GP~LIVVP~SL-L~QW~~Ef~Kw 1072 (2240)
.+.|.|..+...++. +..+|....||+|||+..+..+...+.. ++....+||++|+.- ..|...++.++
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 677889888877776 8889999999999999988765544432 223334899999984 56677888888
Q ss_pred CCCCe--EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCC--chhHHHHHhh
Q 000099 1073 LPSVS--CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLD 1146 (2240)
Q Consensus 1073 ~Pslk--Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk 1146 (2240)
...+. +++++|+.....++. ......+|+|+|++.++... ..+...+..|+|+|||++|.. ....+-+.|.
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~---~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLR---DLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHH---HHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 76543 666666555444432 23456899999999998764 345555789999999999975 5567888888
Q ss_pred cc-ccce-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1147 RY-RCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1147 ~L-ks~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
.+ ++.+ .|+.|||= . .+
T Consensus 266 ~i~~~~rQtlm~saTw---------p--------------~~-------------------------------------- 284 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATW---------P--------------KE-------------------------------------- 284 (519)
T ss_pred hcCCCcccEEEEeeec---------c--------------HH--------------------------------------
Confidence 88 5554 67788871 0 00
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
+|.+..+... .|-.+. +.... ....+..+.++-..
T Consensus 285 ----v~~lA~~fl~-~~~~i~-ig~~~---------------------------------------~~~a~~~i~qive~ 319 (519)
T KOG0331|consen 285 ----VRQLAEDFLN-NPIQIN-VGNKK---------------------------------------ELKANHNIRQIVEV 319 (519)
T ss_pred ----HHHHHHHHhc-CceEEE-ecchh---------------------------------------hhhhhcchhhhhhh
Confidence 0111111111 111111 10000 00001122233333
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH-hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~-atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eER 1383 (2240)
|+ ...|...|..+|.+.. ..+.||||||++...++.|+..|+..++++..|||..++.+|
T Consensus 320 ~~-------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 320 CD-------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred cC-------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 32 2357888888888876 455699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1384 eeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
..+|+.|++++.. +|++|+++++|||+.++|+||+||+|-|...|+||+||++|.|++.....++
T Consensus 381 ~~~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 381 DWVLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred HHHHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEE
Confidence 9999999987776 8999999999999999999999999999999999999999999887765543
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=4.1e-25 Score=274.18 Aligned_cols=313 Identities=17% Similarity=0.187 Sum_probs=215.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH----hCCCCCeEEEechH-HHHHHHHHHHHHCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF----KGNYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~----kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
+++++|.+++..++. +.+.|+..+||+|||++++..+...+.. ......+|||+|+. |+.||.+.+..|+.
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 688999999988875 6789999999999999987765544321 12234689999977 67788888877754
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcc
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L 1148 (2240)
++.+..++|+....... ......++|+|+|++.+.... ..+....+++|||||||+|.... ..+...+..+
T Consensus 99 ~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~ 175 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHA---EVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAET 175 (434)
T ss_pred cCCcEEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC
Confidence 46788888765543221 233457899999999887643 23334567899999999996533 2222223333
Q ss_pred c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1149 k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~-kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
. ....+++|||+-...+.+ |..++. .|.......
T Consensus 176 ~~~~q~~~~SAT~~~~~~~~------------------~~~~~~~~~~~i~~~~-------------------------- 211 (434)
T PRK11192 176 RWRKQTLLFSATLEGDAVQD------------------FAERLLNDPVEVEAEP-------------------------- 211 (434)
T ss_pred ccccEEEEEEeecCHHHHHH------------------HHHHHccCCEEEEecC--------------------------
Confidence 2 345789999973221111 111110 000000000
Q ss_pred HHHHhhhhhhccCCCCceEEE-EEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIV-LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~v-V~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
........... +.+.
T Consensus 212 ----------~~~~~~~i~~~~~~~~------------------------------------------------------ 227 (434)
T PRK11192 212 ----------SRRERKKIHQWYYRAD------------------------------------------------------ 227 (434)
T ss_pred ----------CcccccCceEEEEEeC------------------------------------------------------
Confidence 00000000000 0000
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHH
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERee 1385 (2240)
....|+.+|..++.. ....++||||+....++.|...|...++.+..++|+++..+|..
T Consensus 228 -------------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~ 286 (434)
T PRK11192 228 -------------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNE 286 (434)
T ss_pred -------------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHH
Confidence 001244455554432 24579999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++.|+++... +|++|+++++|||++.+++||+||+|+++..|+||+||++|.|.+..+.++.
T Consensus 287 ~l~~f~~G~~~---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~ 349 (434)
T PRK11192 287 AIKRLTDGRVN---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLV 349 (434)
T ss_pred HHHHHhCCCCc---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEe
Confidence 99999976555 7999999999999999999999999999999999999999999877765553
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=3.5e-25 Score=277.00 Aligned_cols=312 Identities=20% Similarity=0.241 Sum_probs=214.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
.+.|+|.+++..++. +.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++..|
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 688999999988775 778999999999999998877665543221 112589999976 678899999988
Q ss_pred CC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhh
Q 000099 1073 LP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1146 (2240)
Q Consensus 1073 ~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk 1146 (2240)
+. .+.++.+.|+.....+. ......++|+|+|++.+.... ..+....+++|||||||++.... ..+...+.
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQM---MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLA 175 (456)
T ss_pred hccCCCEEEEEECCcCHHHHH---HHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHH
Confidence 64 45666666665443322 122457899999999986542 22334468899999999986533 23334444
Q ss_pred cccc-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1147 RYRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1147 ~Lks-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
.+.. ...|++|||.- +.+.++ ...+ +..|.....
T Consensus 176 ~l~~~~q~l~~SAT~~-~~~~~l---~~~~--------------~~~~~~i~~--------------------------- 210 (456)
T PRK10590 176 KLPAKRQNLLFSATFS-DDIKAL---AEKL--------------LHNPLEIEV--------------------------- 210 (456)
T ss_pred hCCccCeEEEEeCCCc-HHHHHH---HHHH--------------cCCCeEEEE---------------------------
Confidence 5543 34799999952 111111 1100 111100000
Q ss_pred HHHHHhhhhhhccCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1226 PFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE-~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
.... ....... .+..+.
T Consensus 211 ------~~~~---~~~~~i~~~~~~~~----------------------------------------------------- 228 (456)
T PRK10590 211 ------ARRN---TASEQVTQHVHFVD----------------------------------------------------- 228 (456)
T ss_pred ------eccc---ccccceeEEEEEcC-----------------------------------------------------
Confidence 0000 0000000 000000
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
...|..+|..++.. ...+++||||+....++.|.+.|...++.+..+||.++.++|.
T Consensus 229 ---------------------~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 229 ---------------------KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGART 285 (456)
T ss_pred ---------------------HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Confidence 00122223333321 2346899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.+++.|+++... +||+|+++++|||++++++||+||+|+++..|+|++||++|.|.+..+.++.
T Consensus 286 ~~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 286 RALADFKSGDIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred HHHHHHHcCCCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 999999976554 7899999999999999999999999999999999999999999887766554
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.4e-25 Score=275.65 Aligned_cols=312 Identities=17% Similarity=0.200 Sum_probs=212.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
.+.|.|.+++..++. +.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 678999999988775 788999999999999998766554332211 124689999977 67888888887
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHh
Q 000099 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDL 1145 (2240)
Q Consensus 1072 w~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaL 1145 (2240)
+.. ++++.+++|+....... ......++|+|+|++.+.... ..+...++.+|||||||++.+.. ..+...+
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~ 182 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQL---KVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLF 182 (423)
T ss_pred HhccCCceEEEEECCCCHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHH
Confidence 753 56777777765433222 122356899999999997653 23444578999999999986533 2222333
Q ss_pred hccc---cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1146 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1146 k~Lk---s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
..+. ....+++|||.-. .+.++. ..++..|.....
T Consensus 183 ~~~~~~~~~~~~l~SAT~~~-~~~~~~-----------------~~~~~~p~~i~v------------------------ 220 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLSY-RVRELA-----------------FEHMNNPEYVEV------------------------ 220 (423)
T ss_pred HhCCCccceeEEEEeccCCH-HHHHHH-----------------HHHCCCCEEEEE------------------------
Confidence 3332 2335788999521 111110 000000000000
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
..+ ..........+.
T Consensus 221 ----------~~~--~~~~~~i~~~~~----------------------------------------------------- 235 (423)
T PRK04837 221 ----------EPE--QKTGHRIKEELF----------------------------------------------------- 235 (423)
T ss_pred ----------cCC--CcCCCceeEEEE-----------------------------------------------------
Confidence 000 000000000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHH
Q 000099 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eE 1382 (2240)
+ .....|+..|..++.. ....++||||+....++.|..+|...|+.+..+||+++.++
T Consensus 236 ---------~-----------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 236 ---------Y-----------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKK 293 (423)
T ss_pred ---------e-----------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhH
Confidence 0 0011244455555443 23579999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1383 ReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
|..+++.|+.++.. +|++|+++++|||++++++||+||+|+++..|+||+||++|.|++..+..|
T Consensus 294 R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 294 RLRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred HHHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 99999999986655 799999999999999999999999999999999999999999987766444
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=5.7e-25 Score=276.06 Aligned_cols=308 Identities=18% Similarity=0.201 Sum_probs=217.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
..++|+|.+++.-++. +.+.|+..+||+|||++++..+.. ..+.+|||+|+. |+.+|...+..+ ++.
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKAS--GIP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHc--CCc
Confidence 3799999999998876 678999999999999887555432 245789999976 667888888764 455
Q ss_pred EEEEecchhh--HhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhc-cccCcceEecccccccCCchh-------HHHHH
Q 000099 1078 CIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDR---SKL-SKVDWKYIIIDEAQRMKDRES-------VLARD 1144 (2240)
Q Consensus 1078 Vvvy~Gskde--Rk~l~~qei~~~~fdVVITTYE~L~kD~---s~L-~kikWd~VIIDEAHrLKN~~S-------Klska 1144 (2240)
+..+.+.... +..++ .......++|+++|++.+.... ..+ ...++.+|||||||++..... .+...
T Consensus 78 ~~~l~~~~~~~~~~~i~-~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVL-TDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 5555554432 22222 2345667899999999986543 233 445789999999999864321 12222
Q ss_pred hhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
...+.....++||||+-.....++...+++-.|.++.. .|.
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~--------------------------------- 197 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD--------------------------------- 197 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC---------------------------------
Confidence 23445566899999986655555555444333322110 000
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
-|... ..+....
T Consensus 198 ---------------r~nl~-~~v~~~~---------------------------------------------------- 209 (470)
T TIGR00614 198 ---------------RPNLY-YEVRRKT---------------------------------------------------- 209 (470)
T ss_pred ---------------CCCcE-EEEEeCC----------------------------------------------------
Confidence 00000 0000000
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
...+..|..++.+ ...+.++||||..+..++.|...|...|+.+..+||+++.++|.
T Consensus 210 ----------------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~ 266 (470)
T TIGR00614 210 ----------------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARD 266 (470)
T ss_pred ----------------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHH
Confidence 0011111112211 12466789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.+++.|..+... +|++|+++|+|||++++++||+||+|.++..|.|++||++|.|....+.+|+-
T Consensus 267 ~i~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 267 DVHHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred HHHHHHHcCCCc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 999999976555 78999999999999999999999999999999999999999999888777654
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=6.1e-25 Score=281.43 Aligned_cols=312 Identities=18% Similarity=0.219 Sum_probs=214.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||+. |+.|+..++.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999998886 78899999999999999877665543221 1134789999987 67889899988
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCCch--hHHHHH
Q 000099 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDRE--SVLARD 1144 (2240)
Q Consensus 1072 w~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN~~--SKlska 1144 (2240)
|.. ++++..++|........ ......++|||+|++.|..... .+....+++|||||||+|.... ..+...
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~---~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~i 183 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQR---ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183 (572)
T ss_pred HhccCCceEEEEECCCCHHHHH---HHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHH
Confidence 875 35677777765443221 2234568999999999876532 2334467899999999986532 223333
Q ss_pred hhccc---cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1145 LDRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1145 Lk~Lk---s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
+..+. ....+++|||.- +.+.++ .. .++..|.....
T Consensus 184 l~~lp~~~~~q~ll~SATl~-~~v~~l---~~--------------~~l~~p~~i~v----------------------- 222 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLS-HRVLEL---AY--------------EHMNEPEKLVV----------------------- 222 (572)
T ss_pred HHhcccccCceEEEEeCCcc-HHHHHH---HH--------------HHhcCCcEEEe-----------------------
Confidence 33343 345788999942 111111 10 00110000000
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
.... .........+.+.
T Consensus 223 ----------~~~~---~~~~~i~q~~~~~-------------------------------------------------- 239 (572)
T PRK04537 223 ----------ETET---ITAARVRQRIYFP-------------------------------------------------- 239 (572)
T ss_pred ----------cccc---ccccceeEEEEec--------------------------------------------------
Confidence 0000 0000000000000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHH
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~e 1381 (2240)
....|+.+|..+|.. ..+.++||||+....++.|.++|...++.+..+||.++..
T Consensus 240 -----------------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~ 294 (572)
T PRK04537 240 -----------------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQK 294 (572)
T ss_pred -----------------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 001133344444432 3467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+|..+++.|+++... +||+|+++++|||++.+++||+||.||++..|+|++||++|.|.+..+.++
T Consensus 295 eR~~il~~Fr~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~ 360 (572)
T PRK04537 295 KRESLLNRFQKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360 (572)
T ss_pred HHHHHHHHHHcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEE
Confidence 999999999976555 799999999999999999999999999999999999999999987766554
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=2e-24 Score=278.71 Aligned_cols=314 Identities=15% Similarity=0.149 Sum_probs=218.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---Ps 1075 (2240)
++.|+|.+++..++. +.+.|+..+||+|||++++..+...+........+|||||+. |+.||..+|.+|. ++
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999988875 678899999999999998666555444333445789999976 6788988887764 57
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC- 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lks- 1150 (2240)
+.++.++|+.....++. ......+|||+|++.+.... ..+.-..+.+|||||||.|.+.. ..+...+..+..
T Consensus 104 i~v~~~~gG~~~~~q~~---~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~ 180 (629)
T PRK11634 104 VNVVALYGGQRYDVQLR---ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 (629)
T ss_pred ceEEEEECCcCHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCC
Confidence 88887777754433321 22346899999999997653 22334467899999999986543 234445555543
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
...+++|||.- ..+.++. . .++..|....
T Consensus 181 ~q~llfSAT~p-~~i~~i~---~--------------~~l~~~~~i~--------------------------------- 209 (629)
T PRK11634 181 HQTALFSATMP-EAIRRIT---R--------------RFMKEPQEVR--------------------------------- 209 (629)
T ss_pred CeEEEEEccCC-hhHHHHH---H--------------HHcCCCeEEE---------------------------------
Confidence 34788999941 1111110 0 0000000000
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
+... ....|......+
T Consensus 210 -i~~~-~~~~~~i~q~~~-------------------------------------------------------------- 225 (629)
T PRK11634 210 -IQSS-VTTRPDISQSYW-------------------------------------------------------------- 225 (629)
T ss_pred -ccCc-cccCCceEEEEE--------------------------------------------------------------
Confidence 0000 000000000000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
.+....|+..|.++|.. ....++||||.....++.|..+|...|+.+..++|.++..+|..++++|
T Consensus 226 ------------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 226 ------------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 (629)
T ss_pred ------------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHH
Confidence 00011244555555543 2346899999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+.+..+ |||+|+++++|||++.+++||+||+|.++..|+|++||++|.|....+.++..
T Consensus 292 r~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 292 KDGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred hCCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEec
Confidence 976655 79999999999999999999999999999999999999999998776655543
No 37
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=4.7e-24 Score=270.37 Aligned_cols=419 Identities=20% Similarity=0.222 Sum_probs=252.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
..||+||.+.++-++ +.|.|+|.+||+|||.+|+.++...++.... +.++++||+. |+.|....|..++-.-.
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 479999999998877 6789999999999999998888777765444 8999999987 77888888888775555
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccc---cCcceEecccccccC-C-chhHHHHHhhcc--cc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRMK-D-RESVLARDLDRY--RC 1150 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~k---ikWd~VIIDEAHrLK-N-~~SKlskaLk~L--ks 1150 (2240)
+....|+...+... ...+...+|+|.|++.+..+...-.. -.|.+||||||||.. | +.+.+.+.+..+ ..
T Consensus 135 ~T~~l~~~~~~~~r---~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNR---GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred ceeeccCccCCCch---hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 55555553322221 23356779999999999987533222 359999999999974 3 233444344333 33
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCCh--HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR--KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~--~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
.+.|+|||||= +++....+.+.-|... +.-+ .....-+.. .........+ +.. ....+..+|..+++|++
T Consensus 212 ~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~----lr~~~~i~v~-~~~-~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 212 NQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEE----LREHVQIPVD-LSL-CERDIEDPFGMIIEPLL 283 (746)
T ss_pred ccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHH----HhccCcccCc-HHH-hhhhhhhhHHHHHHHHH
Confidence 47899999997 7777777666655444 2110 011111100 0000001111 111 11234567888888887
Q ss_pred HHhhhhhhcc------------------CCCCceEEEEEeccCHHHHHHHH-HHHHccCcc-cCchhHHhhhhcChhhHH
Q 000099 1229 LRRRVEDVEG------------------SLPPKVSIVLRCRMSAIQSAIYD-WIKATGTLR-VDPEDEKRRVQKNPIYQA 1288 (2240)
Q Consensus 1229 LRRlKkDVek------------------dLP~KvE~vV~c~LS~~Qr~LYk-~L~~~~~l~-ld~~~e~~~l~~~~~~~a 1288 (2240)
.+-....+.. ..|......-.| +.......|. .++....++ ++....... .......+
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~-f~~e~~~~ 361 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLED-FYEEVALK 361 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhh-hccccchh
Confidence 6655333221 011111111111 1111111111 011111111 000000000 00000000
Q ss_pred H----HH-HHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh--cCCeEEEEecchhHHHHHH
Q 000099 1289 K----VY-KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILE 1361 (2240)
Q Consensus 1289 k----~~-~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~a--tGhKVLIFSQ~t~~LDiLe 1361 (2240)
+ .. ..+...++.+..-|.|-.. + .....+|++.|.++|.+... ...|+|||+.++..++.|.
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~----------~-~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~ 430 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSL----------D-PPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALK 430 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhc----------C-CCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHH
Confidence 0 00 0000001111111111000 0 01246799999999988765 4579999999999999999
Q ss_pred HHHH-h--cCceEEeecC--------CCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhh
Q 000099 1362 EYLQ-W--RQLVYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430 (2240)
Q Consensus 1362 d~L~-~--rGiky~rLDG--------sTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~ 1430 (2240)
.+|. . .|++...+.| +|++.+..++|+.|++|+.+ +|++|.+|.+|||+..||.||.||..-||..
T Consensus 431 ~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIr 507 (746)
T KOG0354|consen 431 KWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIR 507 (746)
T ss_pred HHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHH
Confidence 9998 2 2555555555 68889999999999987766 7999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCcceEEEEE
Q 000099 1431 EEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1431 d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.+||+|| +|.-..+-|.++.
T Consensus 508 mIQrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 508 MVQRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred HHHHhcc-ccccCCeEEEEEc
Confidence 9999999 8877666665554
No 38
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.5e-24 Score=270.42 Aligned_cols=313 Identities=20% Similarity=0.256 Sum_probs=213.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
.++++|.+++..++. +.+.|++.+||+|||+.++..+...+.... ....+|||+|+. |..||..++..
T Consensus 109 ~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 699999999987765 788999999999999988776555443221 134689999976 67788888887
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCchh--HHHHHh
Q 000099 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDL 1145 (2240)
Q Consensus 1072 w~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~S--KlskaL 1145 (2240)
++. ++.+..++|+.+..... .......++|+|+|++.+..... .+....+++|||||+|++.+... .+...+
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~--~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQL--KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred hhccCCCEEEEEEccCChHHHH--HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 754 46777777765433222 12334568999999999965422 22223678999999999975332 233444
Q ss_pred hccc---cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1146 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1146 k~Lk---s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
..+. ....+++|||.. +++.++ .. .|...|.....
T Consensus 263 ~~~~~~~~~q~i~~SAT~~-~~~~~~---~~--------------~~~~~~~~v~~------------------------ 300 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFT-DDVMNL---AK--------------QWTTDPAIVEI------------------------ 300 (475)
T ss_pred HhCCCCCCceEEEEEeecC-HHHHHH---HH--------------HhccCCEEEEe------------------------
Confidence 4442 346899999942 111111 11 01111100000
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
....+ ........+++
T Consensus 301 ---------~~~~~---~~~~~~~~~~~---------------------------------------------------- 316 (475)
T PRK01297 301 ---------EPENV---ASDTVEQHVYA---------------------------------------------------- 316 (475)
T ss_pred ---------ccCcC---CCCcccEEEEE----------------------------------------------------
Confidence 00000 00000000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHH
Q 000099 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eE 1382 (2240)
+....|..+|..++.. ....++||||+.+..++.|.++|...|+.+..++|.++.++
T Consensus 317 ---------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 373 (475)
T PRK01297 317 ---------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHK 373 (475)
T ss_pred ---------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 0012233444444432 23469999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1383 ReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
|.++++.|++++.. +|++|+++++|||+.++|+||+||.|++...|+|++||++|.|....+.++
T Consensus 374 R~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~ 438 (475)
T PRK01297 374 RIKTLEGFREGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISF 438 (475)
T ss_pred HHHHHHHHhCCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEE
Confidence 99999999976555 789999999999999999999999999999999999999999987665544
No 39
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4.9e-25 Score=258.84 Aligned_cols=314 Identities=23% Similarity=0.247 Sum_probs=227.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-HHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-LHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E-f~Kw~--Psl 1076 (2240)
.+.+.|.+++..++. +..+|.+.+||+|||+..+..|...+-..+..-.+||++|+..|.+...| |+.+. -++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 466789999988886 88899999999999999888766544335555567999999977665554 66654 357
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCc--hhHHHHHhhccccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks~ 1151 (2240)
++.++.|+.+...... .....++|+|+|++.++++... |.-....|+|+|||+++.|. ...+.+.|+.+...
T Consensus 159 r~~~lvGG~~m~~q~~---~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQAN---QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred EEEEEecCchHHHHHH---HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc
Confidence 8889999888765543 2356789999999999987653 44446789999999999874 34677777777654
Q ss_pred e-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1152 R-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1152 ~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
+ .+|+|||- ..+... |. +
T Consensus 236 rqt~LfsATM-t~kv~k----------------------------------------------------L~---r----- 254 (476)
T KOG0330|consen 236 RQTFLFSATM-TKKVRK----------------------------------------------------LQ---R----- 254 (476)
T ss_pred ceEEEEEeec-chhhHH----------------------------------------------------HH---h-----
Confidence 4 67788883 111111 11 0
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
..+ +-|. .|.-+ ..|..+ ..|.+. |+
T Consensus 255 ---asl--~~p~------~v~~s----~ky~tv-----------------------------------~~lkQ~----yl 280 (476)
T KOG0330|consen 255 ---ASL--DNPV------KVAVS----SKYQTV-----------------------------------DHLKQT----YL 280 (476)
T ss_pred ---hcc--CCCe------EEecc----chhcch-----------------------------------HHhhhh----eE
Confidence 000 0011 11100 011111 011110 11
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
+.+ ..-|-..|..||.++. |..+||||++....+.+.-+|+..|+....|+|.|++..|..+++.|
T Consensus 281 fv~------------~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 281 FVP------------GKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred ecc------------ccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHH
Confidence 111 1224556777777654 68999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+++..+ +|++|++|++|||++.+|+||+||.|-+-..|+||.||+.|.|... .++.|++
T Consensus 347 k~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG--~~ItlVt 405 (476)
T KOG0330|consen 347 KAGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSG--KAITLVT 405 (476)
T ss_pred hccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCc--ceEEEEe
Confidence 986655 8999999999999999999999999999999999999999999443 4445544
No 40
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=1.3e-24 Score=275.89 Aligned_cols=313 Identities=17% Similarity=0.202 Sum_probs=212.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HH------hCCCCCeEEEechH-HHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EF------KGNYGPHLIIVPNA-VLVNWKSELH 1070 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll-e~------kg~~GP~LIVVP~S-LL~QW~~Ef~ 1070 (2240)
..++|+|..++..++. +.+.|+..+||+|||+.++..+...+ .. ......+|||+|+. |+.|+..++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 3799999999998875 78899999999999999877654432 21 11334689999987 6677888888
Q ss_pred HHCCC--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHH
Q 000099 1071 KWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARD 1144 (2240)
Q Consensus 1071 Kw~Ps--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlska 1144 (2240)
.+... ++++.+.|+......+. .....++|+|+|++.+.... ..+...+..+|||||||+|... ...+...
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~---~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i 294 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLY---RIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQI 294 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHH
Confidence 77644 45555555443322221 12346899999999886542 2233346789999999999653 2344455
Q ss_pred hhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
+..+.....+++|||.-. .+. .+...+... ++... .
T Consensus 295 ~~~l~~~q~l~~SATl~~-~v~---~l~~~~~~~--------------~~~i~-~------------------------- 330 (518)
T PLN00206 295 FQALSQPQVLLFSATVSP-EVE---KFASSLAKD--------------IILIS-I------------------------- 330 (518)
T ss_pred HHhCCCCcEEEEEeeCCH-HHH---HHHHHhCCC--------------CEEEE-e-------------------------
Confidence 556666788999999521 111 111111000 00000 0
Q ss_pred hHHHHHhhhhhhccCCCCc--eEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPK--VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~K--vE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
.. ...+.. ...+++|.
T Consensus 331 ---------~~--~~~~~~~v~q~~~~~~--------------------------------------------------- 348 (518)
T PLN00206 331 ---------GN--PNRPNKAVKQLAIWVE--------------------------------------------------- 348 (518)
T ss_pred ---------CC--CCCCCcceeEEEEecc---------------------------------------------------
Confidence 00 000000 01111111
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh-cCceEEeecCCCCHH
Q 000099 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLE 1381 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~-rGiky~rLDGsTs~e 1381 (2240)
...|...|..+|........++||||+....++.|...|.. .|+.+..+||+++.+
T Consensus 349 -----------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~ 405 (518)
T PLN00206 349 -----------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMK 405 (518)
T ss_pred -----------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHH
Confidence 01122233333433333345899999999999999999975 699999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+|..+++.|+++... +|++|+++++|||++.+++||+||+|.+...|+||+||++|.|....+.+|
T Consensus 406 eR~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 406 ERREVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred HHHHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 999999999986655 799999999999999999999999999999999999999999977665554
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=1.1e-23 Score=257.83 Aligned_cols=313 Identities=20% Similarity=0.241 Sum_probs=209.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.+.|+|..++..++. +.+.|+..+||+|||++++..+...+........+|||||.. |+.||...+..++. .+
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 778899999999999988776666554333445799999977 56667776766653 34
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks-~ 1151 (2240)
.+..+.|....+... .......+|+|+|++.+.... ..+...++++|||||||++... ...+...+..+.. .
T Consensus 126 ~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 126 RCHACVGGTVVRDDI---NKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDV 202 (401)
T ss_pred eEEEEECCcCHHHHH---HHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCc
Confidence 555566654433222 122345699999999876542 2233447899999999998643 2344555555543 4
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..+++|||+- +...++ ... ++..|....
T Consensus 203 ~~i~~SAT~~-~~~~~~---~~~--------------~~~~~~~~~---------------------------------- 230 (401)
T PTZ00424 203 QVALFSATMP-NEILEL---TTK--------------FMRDPKRIL---------------------------------- 230 (401)
T ss_pred EEEEEEecCC-HHHHHH---HHH--------------HcCCCEEEE----------------------------------
Confidence 6899999962 111111 000 000000000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
.+.+ ...+.......+.+..
T Consensus 231 ~~~~-~~~~~~~~~~~~~~~~----------------------------------------------------------- 250 (401)
T PTZ00424 231 VKKD-ELTLEGIRQFYVAVEK----------------------------------------------------------- 250 (401)
T ss_pred eCCC-CcccCCceEEEEecCh-----------------------------------------------------------
Confidence 0000 0000000001111000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
...+...|..++.. ....++||||.....++.+...|...++.+..+||+++.++|..+++.|+
T Consensus 251 --------------~~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~ 314 (401)
T PTZ00424 251 --------------EEWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFR 314 (401)
T ss_pred --------------HHHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 00011112222221 13468999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++..+ +|++|+++++|||++.+++||+||++.+...|+|++||++|.|....+.++
T Consensus 315 ~g~~~---vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l 370 (401)
T PTZ00424 315 SGSTR---VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINF 370 (401)
T ss_pred cCCCC---EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEE
Confidence 76555 799999999999999999999999999999999999999999976555443
No 42
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.6e-24 Score=267.45 Aligned_cols=315 Identities=22% Similarity=0.295 Sum_probs=222.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--hCCCCCeEEEechHH-HHHHHHHHHHHCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--KGNYGPHLIIVPNAV-LVNWKSELHKWLP-- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~--kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~P-- 1074 (2240)
...|.|..++..++. +.+.|....||+|||+..+..+...+.. .....++||++|+.. ..|-.+++.++..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 688999999988886 6888999999999999988877666542 222223899999985 5666777777653
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhccc
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR 1149 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk 1149 (2240)
.+++++++|+.....+.. .... ..+|||.|++.+.... ..|...+..++|+|||++|.+.. ..+...+..+.
T Consensus 127 ~~~~~~~i~GG~~~~~q~~--~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p 203 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIE--ALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP 203 (513)
T ss_pred CCccEEEEECCCCHHHHHH--HHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC
Confidence 577788888776665542 2333 4999999999998653 34566678999999999998753 34455555554
Q ss_pred c-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1150 C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1150 s-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
. ...+++|||--. . ++.+..-++. .|..
T Consensus 204 ~~~qtllfSAT~~~-~---i~~l~~~~l~-----------------------------------------------~p~~ 232 (513)
T COG0513 204 PDRQTLLFSATMPD-D---IRELARRYLN-----------------------------------------------DPVE 232 (513)
T ss_pred cccEEEEEecCCCH-H---HHHHHHHHcc-----------------------------------------------CCcE
Confidence 4 557889999411 1 1111110000 0000
Q ss_pred HHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1229 LRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
+..-........+.....++.|.-
T Consensus 233 i~v~~~~~~~~~~~i~q~~~~v~~-------------------------------------------------------- 256 (513)
T COG0513 233 IEVSVEKLERTLKKIKQFYLEVES-------------------------------------------------------- 256 (513)
T ss_pred EEEccccccccccCceEEEEEeCC--------------------------------------------------------
Confidence 000000000000111111111100
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHH
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk 1388 (2240)
...|+.+|..+|.... ..++||||.....++.|...|..+|+.+..|||++++++|.++++
T Consensus 257 -----------------~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 257 -----------------EEEKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred -----------------HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 0136667777766433 237999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1389 ~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
.|+++... +||+|+++++|||+..+++||+||.|.++..|+||+||++|.|.+.....+
T Consensus 318 ~F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~f 376 (513)
T COG0513 318 KFKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISF 376 (513)
T ss_pred HHHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEE
Confidence 99976665 799999999999999999999999999999999999999999977654443
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=2.2e-23 Score=269.00 Aligned_cols=304 Identities=18% Similarity=0.180 Sum_probs=212.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkV 1078 (2240)
.++|+|.+++..++. +.++|+..+||.|||++++..+. . ..+.+|||+|+. |+.+|...|... ++.+
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~----~~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--V----LDGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--H----cCCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 799999999988775 78899999999999988765443 2 135799999975 677788888765 4555
Q ss_pred EEEecchhhH--hHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCchh-------HHHHHhhc
Q 000099 1079 IYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDR 1147 (2240)
Q Consensus 1079 vvy~GskdeR--k~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~S-------KlskaLk~ 1147 (2240)
.++.+..... ...+ .....+..+++++|++.+..+ ...+...++++|||||||.+..... .+......
T Consensus 93 ~~~~s~~~~~~~~~~~-~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 93 ACLNSTQTREQQLEVM-AGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEcCCCCHHHHHHHH-HHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 5555543222 2221 234456789999999988743 3445556789999999999864321 22222223
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
+.....++||||+-.....++...+.+..|.++.. .|..
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~r----------------------------------- 210 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFDR----------------------------------- 210 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCCC-----------------------------------
Confidence 44556899999986555555555444332221100 0000
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
|.....++.
T Consensus 211 -------------~nl~~~v~~---------------------------------------------------------- 219 (607)
T PRK11057 211 -------------PNIRYTLVE---------------------------------------------------------- 219 (607)
T ss_pred -------------Ccceeeeee----------------------------------------------------------
Confidence 000000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
...++..|..++. ...+.++||||..+..++.+...|...|+.+..+||+++.++|..++
T Consensus 220 ------------------~~~~~~~l~~~l~--~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~ 279 (607)
T PRK11057 220 ------------------KFKPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQ 279 (607)
T ss_pred ------------------ccchHHHHHHHHH--hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 0000111111221 13467899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+.|..+... +|++|.++|+|||++++++||+||+|++...|.|++||++|.|....+.+++
T Consensus 280 ~~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 280 EAFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred HHHHCCCCC---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 999976554 7899999999999999999999999999999999999999999877765543
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=2.9e-23 Score=267.37 Aligned_cols=304 Identities=20% Similarity=0.204 Sum_probs=216.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
.++||+|.+++.-++. +.+.|++.+||.|||+.+...+. + ..+.+|||+|.. |+.++...+... ++.
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 3799999999988875 67899999999999998764432 2 236789999965 778898888875 466
Q ss_pred EEEEecchhh--HhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCch-------hHHHHHhh
Q 000099 1078 CIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE-------SVLARDLD 1146 (2240)
Q Consensus 1078 Vvvy~Gskde--Rk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~-------SKlskaLk 1146 (2240)
+..+++.... ...+. .....+..+|+++|++.+... ...+...++.+|||||||.+.... ..+.....
T Consensus 80 ~~~~~s~~~~~~~~~~~-~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIE-KALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 6666665432 22222 234456789999999998643 345666789999999999985422 12333333
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
.+.....++||||+-.....+++..+.+-.+..|.. .|.
T Consensus 159 ~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~----------------------------------- 197 (591)
T TIGR01389 159 RFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD----------------------------------- 197 (591)
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC-----------------------------------
Confidence 454455899999986555555554443222211100 000
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
.|.....++.
T Consensus 198 -------------r~nl~~~v~~--------------------------------------------------------- 207 (591)
T TIGR01389 198 -------------RPNLRFSVVK--------------------------------------------------------- 207 (591)
T ss_pred -------------CCCcEEEEEe---------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
...+...|..+|.. ..+.++||||..+..++.|.++|...|+.+..+||+++.++|..+
T Consensus 208 -------------------~~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i 266 (591)
T TIGR01389 208 -------------------KNNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAEN 266 (591)
T ss_pred -------------------CCCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHH
Confidence 00111222222322 126789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++.|..+... +|++|.++|.|||++++++||+||+|+|...|.|++||++|.|....+.++
T Consensus 267 ~~~F~~g~~~---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~ 327 (591)
T TIGR01389 267 QEDFLYDDVK---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILL 327 (591)
T ss_pred HHHHHcCCCc---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEe
Confidence 9999975544 799999999999999999999999999999999999999999987776544
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=1.5e-22 Score=265.85 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=210.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
..+||+|.++|..++. +.+.|+..+||.|||+++...++. ..+.+|||+|+. |+.++...+.. .++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~--~GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQ--ANIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHh--CCCe
Confidence 4799999999998876 788999999999999988665532 136799999976 55556666654 3566
Q ss_pred EEEEecchhh--HhHHHHHHHh--hcCCcEEEEcHHHHHHh---hhhcc----ccCcceEecccccccCCchh-------
Q 000099 1078 CIYYVGAKDQ--RSRLFSQEVA--ALKFNVLVTTYEFIMYD---RSKLS----KVDWKYIIIDEAQRMKDRES------- 1139 (2240)
Q Consensus 1078 Vvvy~Gskde--Rk~l~~qei~--~~~fdVVITTYE~L~kD---~s~L~----kikWd~VIIDEAHrLKN~~S------- 1139 (2240)
...+.++... ...++. ... .+.++||++|++.+... ...+. ...+.+|||||||.+.....
T Consensus 527 Aa~L~s~~s~~eq~~ilr-~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr 605 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQ-ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 605 (1195)
T ss_pred EEEEECCCCHHHHHHHHH-HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHH
Confidence 6666665432 222221 122 26789999999998642 11221 22478999999999864321
Q ss_pred HHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000099 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (2240)
Q Consensus 1140 KlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~R 1219 (2240)
.+......+....+++||||.......++...|.+..+.+|. ..|..
T Consensus 606 ~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf~R--------------------------- 652 (1195)
T PLN03137 606 GLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSFNR--------------------------- 652 (1195)
T ss_pred HHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------cccCc---------------------------
Confidence 111222344555689999998666555555544433222211 00100
Q ss_pred HHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
|.....++. . . .
T Consensus 653 ---------------------pNL~y~Vv~-k-~---k------------------------------------------ 664 (1195)
T PLN03137 653 ---------------------PNLWYSVVP-K-T---K------------------------------------------ 664 (1195)
T ss_pred ---------------------cceEEEEec-c-c---h------------------------------------------
Confidence 000000000 0 0 0
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCC
Q 000099 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs 1379 (2240)
..+..|..++.. ...+...||||..+..++.|..+|...|+.+..+||+++
T Consensus 665 ----------------------------k~le~L~~~I~~-~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs 715 (1195)
T PLN03137 665 ----------------------------KCLEDIDKFIKE-NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMD 715 (1195)
T ss_pred ----------------------------hHHHHHHHHHHh-cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCC
Confidence 000111111111 012457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1380 ~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.++|..++++|..++.. +||+|.++|+|||++++++||+||+|.+...|.|++|||+|.|....+.+|+-
T Consensus 716 ~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys 785 (1195)
T PLN03137 716 PAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 785 (1195)
T ss_pred HHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEec
Confidence 99999999999976555 78999999999999999999999999999999999999999999888777654
No 46
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=1.2e-22 Score=273.79 Aligned_cols=361 Identities=17% Similarity=0.188 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl 1076 (2240)
..||+||.++|..+...+. ...++||++.||+|||+++++++..++. .+..+++|||||. .|+.||..+|..+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 5799999999987776554 4467899999999999999999888775 3445789999995 48899999999874321
Q ss_pred e-EE-EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh-------hccccCcceEecccccccCCc----------
Q 000099 1077 S-CI-YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKDR---------- 1137 (2240)
Q Consensus 1077 k-Vv-vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s-------~L~kikWd~VIIDEAHrLKN~---------- 1137 (2240)
. .+ ...+...... ........|+|+|++++.+... .+....|++||||||||....
T Consensus 491 ~~~~~~i~~i~~L~~-----~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 491 DQTFASIYDIKGLED-----KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred ccchhhhhchhhhhh-----hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 1 11 1111111110 1123457899999999876421 123347899999999996310
Q ss_pred -------hhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000099 1138 -------ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (2240)
Q Consensus 1138 -------~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~ 1210 (2240)
.++..+.|..+. ..+|+|||||..++ + +.|+.|+....
T Consensus 566 ~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----~------------------~~FG~pv~~Ys------------ 610 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----T------------------EIFGEPVYTYS------------ 610 (1123)
T ss_pred cchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----h------------------HHhCCeeEEee------------
Confidence 133344444443 57899999997432 1 12222222110
Q ss_pred HHHHHHHHHHHHHh-hHHHHHhhhhhhccCCCCceEEE-EE---eccC-HHHHHHHHHHHHccC-cccCchhHHhhhhcC
Q 000099 1211 EKKVIIIHRLHQIL-EPFMLRRRVEDVEGSLPPKVSIV-LR---CRMS-AIQSAIYDWIKATGT-LRVDPEDEKRRVQKN 1283 (2240)
Q Consensus 1211 Ee~~lii~RLhklL-rPFmLRRlKkDVekdLP~KvE~v-V~---c~LS-~~Qr~LYk~L~~~~~-l~ld~~~e~~~l~~~ 1283 (2240)
+.+.+ ..|++. ..|+..... +. +... ..+...|+....... ..+. .+.
T Consensus 611 ---------l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~--d~~------ 665 (1123)
T PRK11448 611 ---------YREAVIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLE--DEV------ 665 (1123)
T ss_pred ---------HHHHHhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCc--HHH------
Confidence 00000 011100 001111111 00 0000 011111111100000 0000 000
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEecchhHHHHHH
Q 000099 1284 PIYQAKVYK-TLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILE 1361 (2240)
Q Consensus 1284 ~~~~ak~~~-sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~a-tGhKVLIFSQ~t~~LDiLe 1361 (2240)
.+....+. .+.+ -...+. ++..++..+.. ...|+||||....+++.|.
T Consensus 666 -~~~~~~~~~~vi~-~~~~~~----------------------------i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 666 -DFEVEDFNRRVIT-ESFNRV----------------------------VCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred -hhhHHHHHHHHhh-HHHHHH----------------------------HHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 00000000 0000 000111 11122222211 2379999999999999888
Q ss_pred HHHHhc------Cc---eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHH
Q 000099 1362 EYLQWR------QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1432 (2240)
Q Consensus 1362 d~L~~r------Gi---ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~ 1432 (2240)
+.|... ++ .+..++|+++ ++.++|++|.++ .+..||+|++..++|+|++.+++||+++++-++..|+
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~--~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE--RLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC--CCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 887643 22 3567999985 577899999863 3447899999999999999999999999999999999
Q ss_pred HHhhhhhccCC---cceEEEEEEehhHHHh
Q 000099 1433 QAVARAHRIGQ---KREVKVIYMEAVVDKI 1459 (2240)
Q Consensus 1433 QAiGRAhRIGQ---KKeV~VyrLvTVEEkI 1459 (2240)
|++||+.|+.- |..+.||.++.+.+.+
T Consensus 792 QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l 821 (1123)
T PRK11448 792 QMLGRATRLCPEIGKTHFRIFDAVDIYEAL 821 (1123)
T ss_pred HHHhhhccCCccCCCceEEEEehHHHHHhc
Confidence 99999999865 6668899987755443
No 47
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.90 E-value=8.8e-23 Score=242.24 Aligned_cols=273 Identities=15% Similarity=0.194 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc--
Q 000099 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR-- 1405 (2240)
Q Consensus 1328 GKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr-- 1405 (2240)
.|+.+|.-+|. |.--..|.|||.+..+.+-.|.-+|..-|++.|.|+|.++...|..+|++||.+- +-+||+|+
T Consensus 253 DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~---YdivIAtD~s 328 (569)
T KOG0346|consen 253 DKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL---YDIVIATDDS 328 (569)
T ss_pred hhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc---eeEEEEccCc
Confidence 46666655543 4444579999999999999999999999999999999999999999999999743 33677777
Q ss_pred ---------------------------------cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1406 ---------------------------------AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1406 ---------------------------------AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
-.++|||++.+.+||+||.|-++..|+||+||+.|.|.+..+.-|..
T Consensus 329 ~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 329 ADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred cchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEec
Confidence 12469999999999999999999999999999999998888766544
Q ss_pred ehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHH---HHHH
Q 000099 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR---MTLE 1529 (2240)
Q Consensus 1453 vTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr---~~Le 1529 (2240)
.. + ..| .+++|+.....- ..+...+++.-.|+.+..+.-|- ..++
T Consensus 409 P~-e-----------------------~~g----~~~le~~~~d~~----~~~~~qilqPY~f~~eevesfryR~eD~~r 456 (569)
T KOG0346|consen 409 PK-E-----------------------EFG----KESLESILKDEN----RQEGRQILQPYQFRMEEVESFRYRAEDALR 456 (569)
T ss_pred ch-H-----------------------Hhh----hhHHHHHHhhHH----hhcCccccccccchHHHHHHHHHHHHHHHH
Confidence 21 0 111 245555554311 22334488888898876665542 2233
Q ss_pred HHH---hhhhhhhccccCCCCHHHHHHHHhcCHHHHHHHHhhhhhhCcchhhhccccchHHHhhchHHHHHHHhhhcCC-
Q 000099 1530 TLL---HDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK- 1605 (2240)
Q Consensus 1530 ~LL---e~ee~~~e~~~~v~~~eeLN~~lARseeE~elf~~mD~er~~~~~l~~~~evP~~lr~~~~~~~~~~~~~~k~- 1605 (2240)
+.. -.+.+.+|...+.+..|.|...++.++.|+.++ +.|..+.......|...||+||.- ++.....+.
T Consensus 457 avTkvAvreaR~kEikqEll~SeKLK~~FeeNprdl~lL-rhDkpl~~~~~qphL~dvpeYlvp------~alr~~~~~~ 529 (569)
T KOG0346|consen 457 AVTKVAVREARLKEIKQELLNSEKLKAFFEENPRDLQLL-RHDKPLRLAIVQPHLKDVPEYLVP------EALRGVVKSV 529 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcChHHHHHh-hcCCcccccccchhhccCchhhCC------HHHhhccccc
Confidence 222 246677788888899999999999999999999 899888877788899999999943 122222111
Q ss_pred -CCcccccccccccCccchhhhhhcCCCCCCCCCCcccc
Q 000099 1606 -PSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVD 1643 (2240)
Q Consensus 1606 -~~~~~~~~~~~~~~~~~~~~erkr~~~~~k~~~~k~~~ 1643 (2240)
..+.++.++......+-.++-|+-.|+++|++|++.++
T Consensus 530 k~r~~g~~~~r~n~~rk~~kp~r~f~~kg~K~~pl~~~k 568 (569)
T KOG0346|consen 530 KTRAPGFSPFRNNKRRKVQKPLRKFQPKGGKRDPLKTFK 568 (569)
T ss_pred ccccCCCccchhhhhhhccCchhhcCCCCCCCCcccccC
Confidence 23355666544421111233333447888889888654
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.90 E-value=8.2e-22 Score=255.52 Aligned_cols=307 Identities=17% Similarity=0.242 Sum_probs=207.0
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P- 1074 (2240)
.+|.++|.+++..++.-... ..+.||..+||+|||++++..+...+. ....+||++|+. |..||..+|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 37999999999999875432 346799999999999998776665554 234799999987 56889999999987
Q ss_pred -CCeEEEEecchhhH--hHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc--
Q 000099 1075 -SVSCIYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-- 1149 (2240)
Q Consensus 1075 -slkVvvy~GskdeR--k~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk-- 1149 (2240)
++++.+++|+.... ...+ ..+..+..+|+|+|+..+... +...+..+|||||+|++.-. .+...+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~-~~i~~g~~~IiVgT~~ll~~~---~~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~~ 384 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELL-ETIASGQIHLVVGTHALIQEK---VEFKRLALVIIDEQHRFGVE--QRKKLREKGQGG 384 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHH-HHHhCCCCCEEEecHHHHhcc---ccccccceEEEechhhccHH--HHHHHHHhcccC
Confidence 57888888865432 2222 234566789999999988643 22246789999999997421 2222222222
Q ss_pred -cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1150 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1150 -s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
..+.|++||||+...+. +.. ++. +.
T Consensus 385 ~~~~~l~~SATp~prtl~----l~~------~~~-------l~------------------------------------- 410 (630)
T TIGR00643 385 FTPHVLVMSATPIPRTLA----LTV------YGD-------LD------------------------------------- 410 (630)
T ss_pred CCCCEEEEeCCCCcHHHH----HHh------cCC-------cc-------------------------------------
Confidence 56799999999754321 100 000 00
Q ss_pred HHhhhhhhccCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1229 LRRRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1229 LRRlKkDVekdLP~Kv--E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
..+...+|... .....+.-.
T Consensus 411 -----~~~i~~~p~~r~~i~~~~~~~~----------------------------------------------------- 432 (630)
T TIGR00643 411 -----TSIIDELPPGRKPITTVLIKHD----------------------------------------------------- 432 (630)
T ss_pred -----eeeeccCCCCCCceEEEEeCcc-----------------------------------------------------
Confidence 00001122110 000000000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecch--------hHHHHHHHHHHh--cCceEEeecC
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW--RQLVYRRIDG 1376 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t--------~~LDiLed~L~~--rGiky~rLDG 1376 (2240)
+...+...+.+....+++++|||... ..+..+.+.|.. .++.+..+||
T Consensus 433 ----------------------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG 490 (630)
T TIGR00643 433 ----------------------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHG 490 (630)
T ss_pred ----------------------hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 00111112222234577888888654 233445555543 4788999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1377 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1377 sTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.++.++|..++++|.++..+ +|+||++.++|||++++++||++|.+. +...+.|+.||++|-|.+..|.+++
T Consensus 491 ~m~~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 491 RMKSDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCCHHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999976655 799999999999999999999999985 7788999999999999887776654
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.89 E-value=1.4e-21 Score=255.21 Aligned_cols=306 Identities=17% Similarity=0.209 Sum_probs=206.3
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.+|.++|..++..+..-... ..+.||..+||+|||++++..+...+. ....+||++|+. |..|+...|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 37999999999988874432 246799999999999998876655443 234799999987 667899999999865
Q ss_pred --CeEEEEecchhh--HhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-cc
Q 000099 1076 --VSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RC 1150 (2240)
Q Consensus 1076 --lkVvvy~Gskde--Rk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks 1150 (2240)
+++.+++|+... +...+ .....+..+|+|+|+..+... +...+..+|||||+|++.- .....+... ..
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~---v~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~~~ 409 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREIL-EAIASGEADIVIGTHALIQDD---VEFHNLGLVIIDEQHRFGV---EQRLALREKGEN 409 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHH-HHHhCCCCCEEEchHHHhccc---chhcccceEEEechhhhhH---HHHHHHHhcCCC
Confidence 788888887543 33322 234556799999999887542 1223678999999999832 222233322 34
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.+.|+|||||+...+. +..+ +. ..
T Consensus 410 ~~iL~~SATp~prtl~----~~~~------g~-----------------~~----------------------------- 433 (681)
T PRK10917 410 PHVLVMTATPIPRTLA----MTAY------GD-----------------LD----------------------------- 433 (681)
T ss_pred CCEEEEeCCCCHHHHH----HHHc------CC-----------------Cc-----------------------------
Confidence 6799999999643211 1000 00 00
Q ss_pred hhhhhhccCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1231 RRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1231 RlKkDVekdLP~Kv--E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
-.+...+|... .....+.
T Consensus 434 ---~s~i~~~p~~r~~i~~~~~~--------------------------------------------------------- 453 (681)
T PRK10917 434 ---VSVIDELPPGRKPITTVVIP--------------------------------------------------------- 453 (681)
T ss_pred ---eEEEecCCCCCCCcEEEEeC---------------------------------------------------------
Confidence 00000122110 0000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchh--------HHHHHHHHHHhc--CceEEeecCCC
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQWR--QLVYRRIDGTT 1378 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~--------~LDiLed~L~~r--Giky~rLDGsT 1378 (2240)
..+...+...+.+....+++++|||.... .+..+.+.|... ++.+..+||.+
T Consensus 454 ------------------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m 515 (681)
T PRK10917 454 ------------------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRM 515 (681)
T ss_pred ------------------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 00001111222223356889999997532 234455666554 57899999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1379 s~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+.++|..++++|.++..+ +|+||++.++|||++++++||++|.+. ....+.|+.||++|.|.+..|.++.
T Consensus 516 ~~~eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 516 KPAEKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred CHHHHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 999999999999976655 799999999999999999999999985 5788999999999999877776554
No 50
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=2.8e-21 Score=253.94 Aligned_cols=318 Identities=17% Similarity=0.131 Sum_probs=208.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-Pslk 1077 (2240)
+|+++|.+++..++. +.+.|++.+||+|||+.++..+...+.. .....+|||+|+. |..+...+|.++. .+++
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 699999999988775 8899999999999999988776655532 2335789999987 5566777788775 3577
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--------hhccccCcceEecccccccCC-chhHHHHHhhcc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY 1148 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~L 1148 (2240)
+.+|.|......+ .......+|+|||++++.... ..| .+.++|||||+|.+.+ ..+.+...+..+
T Consensus 111 v~~~~Gdt~~~~r----~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 111 PATYDGDTPTEER----RWAREHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred EEEEeCCCCHHHH----HHHhcCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 8888887543322 122345799999999886321 112 2568999999999965 233333333332
Q ss_pred --------ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1149 --------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1149 --------ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
.....+++|||- . +..++.. .+ +..|+....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi-~-n~~~~~~---~l--------------~g~~~~~i~---------------------- 223 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATT-A-DPAAAAS---RL--------------IGAPVVAVT---------------------- 223 (742)
T ss_pred HHHHHhcCCCCEEEEEecCC-C-CHHHHHH---HH--------------cCCCeEEEC----------------------
Confidence 124689999994 2 2232211 11 111110000
Q ss_pred HHHhhHHHHHhhhhhhccCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1221 HQILEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLP~Kv-E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
. ...|... ...++.+ .. +. + .. . . ..
T Consensus 224 -------------~---~~~~~~~~~~~~~~p-~~-----~~-~--------~~--~-~---~~---------------- 250 (742)
T TIGR03817 224 -------------E---DGSPRGARTVALWEP-PL-----TE-L--------TG--E-N---GA---------------- 250 (742)
T ss_pred -------------C---CCCCcCceEEEEecC-Cc-----cc-c--------cc--c-c---cc----------------
Confidence 0 0011111 1111110 00 00 0 00 0 0 00
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--------CceE
Q 000099 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--------QLVY 1371 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--------Giky 1371 (2240)
..| . .....+..+| ..+...+.++||||+.+..++.|..+|... +..+
T Consensus 251 ~~r-----------------~---~~~~~~~~~l----~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v 306 (742)
T TIGR03817 251 PVR-----------------R---SASAEAADLL----ADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERV 306 (742)
T ss_pred ccc-----------------c---chHHHHHHHH----HHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccch
Confidence 000 0 0001122333 333345789999999999999999988754 5677
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1372 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1372 ~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
..++|+++.++|.+++++|+++... +|++|+++++|||+..+|+||+||.|-+...|+||+||++|.|....+.+
T Consensus 307 ~~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 307 AAYRAGYLPEDRRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred hheecCCCHHHHHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEE
Confidence 8899999999999999999975554 79999999999999999999999999999999999999999997765443
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=2.1e-21 Score=258.01 Aligned_cols=305 Identities=16% Similarity=0.208 Sum_probs=209.4
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.+|.|+|..++..++.-... ..+.||+.+||+|||.+++..+..... . ...+||+||+. |..|+...|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~--g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-D--GKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-h--CCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 46899999999999875433 256799999999999988766554443 2 25799999987 667888999998764
Q ss_pred --CeEEEEecchh--hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc-c
Q 000099 1076 --VSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 --lkVvvy~Gskd--eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk-s 1150 (2240)
+++.+++|... ++.+.+ ..+..+..+|||+|+..+.++ +.-.+..+|||||+|++.. .....+..+. .
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~-~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv---~~~~~L~~~~~~ 599 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEIL-KELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGV---KQKEKLKELRTS 599 (926)
T ss_pred CCcEEEEEeccccHHHHHHHH-HHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccch---hHHHHHHhcCCC
Confidence 45666666432 333332 234456789999999766432 2224678999999999742 3344455553 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
...|+|||||+...+... +..+..+.++
T Consensus 600 ~~vL~~SATpiprtl~~~--l~g~~d~s~I-------------------------------------------------- 627 (926)
T TIGR00580 600 VDVLTLSATPIPRTLHMS--MSGIRDLSII-------------------------------------------------- 627 (926)
T ss_pred CCEEEEecCCCHHHHHHH--HhcCCCcEEE--------------------------------------------------
Confidence 568999999965433211 1111000000
Q ss_pred hhhhhhccCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1231 RRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1231 RlKkDVekdLP~Kv--E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
...|... .....+..+.
T Consensus 628 -------~~~p~~R~~V~t~v~~~~~------------------------------------------------------ 646 (926)
T TIGR00580 628 -------ATPPEDRLPVRTFVMEYDP------------------------------------------------------ 646 (926)
T ss_pred -------ecCCCCccceEEEEEecCH------------------------------------------------------
Confidence 0000000 0000000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHH
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReea 1386 (2240)
..+...++.. ...+.+|+|||+....++.+.+.|... ++++..+||.|+.++|.++
T Consensus 647 ---------------------~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~i 704 (926)
T TIGR00580 647 ---------------------ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEV 704 (926)
T ss_pred ---------------------HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Confidence 0001111122 234789999999999999999999874 7899999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++|..+..+ +||||++.++|||++++++||++|.+ +....+.|++||++|.|.+..|.+++
T Consensus 705 m~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 705 MLEFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred HHHHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 9999987665 89999999999999999999999996 46778999999999999877665553
No 52
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.9e-23 Score=212.73 Aligned_cols=104 Identities=14% Similarity=0.315 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
|+.+|++||+.|...+|++||.++.+|+++|++.++||||++ |++||||.+|++||++++|.++++|..||.|||.||+
T Consensus 1 ~~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 1 MQQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDV-IKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred ChHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLK 2043 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k 2043 (2240)
.||+++|.+|.+|..|+++|.++.+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998754
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=4.1e-21 Score=256.38 Aligned_cols=326 Identities=17% Similarity=0.162 Sum_probs=203.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHH----
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKS---- 1067 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~S-LL~QW~~---- 1067 (2240)
+.|+|+|..++..++. +.++|++.+||+|||+.++..+...+.... ....+|+|+|+. |..++..
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3699999999987754 789999999999999998776554332211 123589999987 4455544
Q ss_pred ---HHHHHC-------CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hc--cccCcceEecccccc
Q 000099 1068 ---ELHKWL-------PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQR 1133 (2240)
Q Consensus 1068 ---Ef~Kw~-------PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L--~kikWd~VIIDEAHr 1133 (2240)
++.+++ +.+.+.+++|......+. .......+|+|||++.+..... .+ .-.+.++|||||+|.
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~---~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~ 183 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ---KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS 183 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH---HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh
Confidence 333443 367888888875443221 2233467999999999853311 11 012568999999999
Q ss_pred cCCch--hHHHHHhh---cc--ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChh
Q 000099 1134 MKDRE--SVLARDLD---RY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1206 (2240)
Q Consensus 1134 LKN~~--SKlskaLk---~L--ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d 1206 (2240)
+.+.. ..+...+. .+ ....+|+||||. .++.++.. ||...... +..
T Consensus 184 l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~----------------~~~------ 236 (876)
T PRK13767 184 LAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD----------------GEP------ 236 (876)
T ss_pred hccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc----------------CCC------
Confidence 97532 22222222 22 235689999996 23333322 22110000 000
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhh
Q 000099 1207 WLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY 1286 (2240)
Q Consensus 1207 ~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~ 1286 (2240)
+++.+ +...........+.++... ++.
T Consensus 237 ------------------r~~~i------v~~~~~k~~~i~v~~p~~~----l~~------------------------- 263 (876)
T PRK13767 237 ------------------RDCEI------VDARFVKPFDIKVISPVDD----LIH------------------------- 263 (876)
T ss_pred ------------------CceEE------EccCCCccceEEEeccCcc----ccc-------------------------
Confidence 00000 0000000001111111000 000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh
Q 000099 1287 QAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW 1366 (2240)
Q Consensus 1287 ~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~ 1366 (2240)
. .. ......+...|.++...++++||||+.+..++.+...|..
T Consensus 264 --------------------------~-----~~------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~ 306 (876)
T PRK13767 264 --------------------------T-----PA------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRK 306 (876)
T ss_pred --------------------------c-----cc------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 0 00 0000112233344445678999999999999999999876
Q ss_pred c------CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhc
Q 000099 1367 R------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR 1440 (2240)
Q Consensus 1367 r------Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhR 1440 (2240)
. +..+..+||+++.++|..+++.|+++... +|+||+++++|||+..+|+||+||+|.+...|+||+||++|
T Consensus 307 ~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR 383 (876)
T PRK13767 307 RFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGH 383 (876)
T ss_pred hchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCC
Confidence 3 46788899999999999999999976544 79999999999999999999999999999999999999998
Q ss_pred c-CCcceEEEEE
Q 000099 1441 I-GQKREVKVIY 1451 (2240)
Q Consensus 1441 I-GQKKeV~Vyr 1451 (2240)
. |......++.
T Consensus 384 ~~g~~~~g~ii~ 395 (876)
T PRK13767 384 RLGEVSKGRIIV 395 (876)
T ss_pred CCCCCCcEEEEE
Confidence 6 4444444443
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=3.3e-21 Score=260.66 Aligned_cols=307 Identities=18% Similarity=0.213 Sum_probs=208.1
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.++.+.|..++.-++.-... ..+.|++.+||+|||.+++..+..... ....+|||||+. |..|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 37889999999888774432 356899999999999987654433332 245799999987 557788888887654
Q ss_pred --CeEEEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc-c
Q 000099 1076 --VSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 --lkVvvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk-s 1150 (2240)
+++.++.|. ..++...+. ....+..+|||+|++.+.++ +...++++|||||+|++.. .....+..+. .
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~-~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~ 748 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILA-EAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIKAMRAD 748 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHH-HHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHHhcCCC
Confidence 555556554 333333322 23346789999999877532 2224688999999999843 2334455543 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
...|+|||||+...+.-. +..+.++.++. .+ |
T Consensus 749 ~qvLl~SATpiprtl~l~--~~gl~d~~~I~----------~~--------------------------------p---- 780 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMA--MSGMRDLSIIA----------TP--------------------------------P---- 780 (1147)
T ss_pred CcEEEEcCCCCHHHHHHH--HhhCCCcEEEe----------cC--------------------------------C----
Confidence 568999999976543211 11111110000 00 0
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
...+|- .+. .....
T Consensus 781 ------~~r~~v--~~~-~~~~~--------------------------------------------------------- 794 (1147)
T PRK10689 781 ------ARRLAV--KTF-VREYD--------------------------------------------------------- 794 (1147)
T ss_pred ------CCCCCc--eEE-EEecC---------------------------------------------------------
Confidence 000000 000 00000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIV 1388 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReeaIk 1388 (2240)
.......++.++. .+.+|+|||+.+..++.+.+.|... ++.+..+||.|+.++|.+++.
T Consensus 795 ------------------~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~ 855 (1147)
T PRK10689 795 ------------------SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 (1147)
T ss_pred ------------------cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 0001122333333 4678999999999999999999877 788999999999999999999
Q ss_pred HHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1389 ~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+|.++..+ +||||+++++|||++.+++||+.+.+ |+...+.|++||++|.|.+..|.+++
T Consensus 856 ~Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 856 DFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHHhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 99986665 79999999999999999999988776 68888999999999999887766554
No 55
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=6.6e-23 Score=210.47 Aligned_cols=103 Identities=13% Similarity=0.253 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1938 ~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
.|+..|++++..|...+|++||.+|++|+++|+|.++||||++ |++||||.+|++||++++|.++++|..||+|||.||
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~-I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYER-ITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhh-CCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3667899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
+.||+++|++|++|+.|+++|.+.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999874
No 56
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=7.9e-23 Score=212.11 Aligned_cols=107 Identities=21% Similarity=0.359 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
-++|++|+.+|...++++||.|+.+|+++|+|+++||||++ |++||||.+|++||++++|.++.+|..||.|||+||+.
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEV-VSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHH-hCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
||+++|.+|.+|..|+++|...++.+.+
T Consensus 83 yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 83 YYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988765
No 57
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.2e-22 Score=208.87 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++++|+.|++.|.+..|++||.++++|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|..||.|||.||+
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+++|.+|.+|..|+++|.+++++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999875
No 58
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.1e-22 Score=208.02 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
|..|.+|++.|.+..|++||.|+++|+.+|+|.++||||++ |++||||.+|++||++++|.++.+|..||.|||+||+.
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~v-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAV-IKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHH-cCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
||+++|.+|++|+.|+++|..+
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999763
No 59
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=1.3e-22 Score=207.33 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
|+++++|+..|.+.+|..||.++.+|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|..||+|||.||+.
T Consensus 2 ~~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 2 KKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKI-ILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred hHHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHH-cCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
||+++|+||.+|+.|+++|.++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999875
No 60
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.2e-21 Score=233.96 Aligned_cols=332 Identities=22% Similarity=0.365 Sum_probs=231.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~P--s 1075 (2240)
..|||||.+.|..|.-.- .-..||+..++|.|||++.+..++... +.+||+|-.++ +.||...|..|.. .
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~tik------K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeeec------ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 479999999999886411 124589999999999998877665443 47899998775 8999999999973 3
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----------hhhccccCcceEecccccccCCchhHHHHHh
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----------~s~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
-.++.+.....++ ......|+||||.++... ..+|....|.+||+||.|-+ +.....+.|
T Consensus 374 ~~i~rFTsd~Ke~--------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRVl 443 (776)
T KOG1123|consen 374 DQICRFTSDAKER--------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVL 443 (776)
T ss_pred cceEEeecccccc--------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHH
Confidence 4455555544332 345678999999998642 46688889999999999997 333444455
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFL-lP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
.-..+.+.|+||||-+..+ |-..=|||| .|.++. ..|.+...
T Consensus 444 siv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE-----------------------AnWmdL~~------------ 486 (776)
T KOG1123|consen 444 SIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-----------------------ANWMDLQK------------ 486 (776)
T ss_pred HHHHHHhhccceeEEeecc--ccccccceeecchhhh-----------------------ccHHHHHh------------
Confidence 5567888999999988764 222224555 444432 11111110
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
...+-......|||+||+.-...|- .... ++ .+ |
T Consensus 487 ------------kGhIA~VqCaEVWCpMt~eFy~eYL---~~~t--------~k--------------r~------l--- 520 (776)
T KOG1123|consen 487 ------------KGHIAKVQCAEVWCPMTPEFYREYL---RENT--------RK--------------RM------L--- 520 (776)
T ss_pred ------------CCceeEEeeeeeecCCCHHHHHHHH---hhhh--------hh--------------hh------e---
Confidence 0123334456799999986544442 2100 00 00 0
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
| .+-...||....-++......|.|+|||+...-. |.+|--..|-+| |.|.|++.+|-
T Consensus 521 -----L------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA---Lk~YAikl~Kpf--IYG~Tsq~ERm 578 (776)
T KOG1123|consen 521 -----L------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFA---LKEYAIKLGKPF--IYGPTSQNERM 578 (776)
T ss_pred -----e------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHH---HHHHHHHcCCce--EECCCchhHHH
Confidence 0 0112357888888888888899999999976544 444544456665 78999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcce----EEEEEEeh
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE----VKVIYMEA 1454 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKe----V~VyrLvT 1454 (2240)
++++.|+. +..+..|++| ++|...+||+.|+++|-..+.. +..++.||.||+.|.-...+ +..|-|++
T Consensus 579 ~ILqnFq~-n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 579 KILQNFQT-NPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred HHHHhccc-CCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 99999986 5566666676 9999999999999999999886 78889999999999863322 45666655
No 61
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=8.3e-21 Score=228.19 Aligned_cols=309 Identities=19% Similarity=0.262 Sum_probs=210.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechHHHH----HHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNAVLV----NWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~SLL~----QW~~Ef~Kw 1072 (2240)
...|.|..++.-.+- +...+-|..||+|||..++..|+..+-.++. .-++||+||+.-|. +....+..|
T Consensus 203 ~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 566788888875554 5566778899999999988877654443432 34689999998553 344556666
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccc---cCcceEecccccccCCch--hHHHHHhhc
Q 000099 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (2240)
Q Consensus 1073 ~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~k---ikWd~VIIDEAHrLKN~~--SKlskaLk~ 1147 (2240)
+ ++.+....|+-+.+.+- ......+||||.|++.|+.+...-.. ....++|+|||+||.... ..+...+..
T Consensus 279 t-~I~~~L~vGGL~lk~QE---~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~l 354 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQE---AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRL 354 (691)
T ss_pred c-cceeeeeecCccHHHHH---HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHh
Confidence 5 48888888888776442 34567899999999999988644333 356789999999997532 233333332
Q ss_pred c-ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 Y-RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 L-ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
. +.+..+|+|||- .....||.++- +++|+...-... .... ..|+.
T Consensus 355 cpk~RQTmLFSATM-teeVkdL~slS-----------------L~kPvrifvd~~-~~~a---------------~~LtQ 400 (691)
T KOG0338|consen 355 CPKNRQTMLFSATM-TEEVKDLASLS-----------------LNKPVRIFVDPN-KDTA---------------PKLTQ 400 (691)
T ss_pred ccccccceeehhhh-HHHHHHHHHhh-----------------cCCCeEEEeCCc-cccc---------------hhhhH
Confidence 2 223469999993 33333333310 111111100000 0000 00000
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
-++ ++|
T Consensus 401 EFi----------------------------------------------------------------------RIR---- 406 (691)
T KOG0338|consen 401 EFI----------------------------------------------------------------------RIR---- 406 (691)
T ss_pred HHh----------------------------------------------------------------------eec----
Confidence 000 000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
+. +..-+-.+|..++.+++ ..++|||++....+..|.-.|-..|+++.-|||+.++.+|.+.
T Consensus 407 ------~~----------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 407 ------PK----------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred ------cc----------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 00 00001223333444443 5689999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
++.|+....+ +||+|+++++|||+..+.+||+|+.|-+...|+||+||+.|.|.-.
T Consensus 469 L~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG 524 (691)
T KOG0338|consen 469 LEKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG 524 (691)
T ss_pred HHHHHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc
Confidence 9999987766 7999999999999999999999999999999999999999999653
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=234.91 Aligned_cols=346 Identities=18% Similarity=0.227 Sum_probs=216.9
Q ss_pred CCcHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
.++|-|...+.|++.-.+ .....+++.+||+|||+.....|..++..+ -.+-++|||||+. |+.|-..+|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 699999999999987655 234458899999999999888887777544 3445789999987 567889999999
Q ss_pred CCC--CeEEEEecchhhHhHHHH--HHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCchhH--HHH
Q 000099 1073 LPS--VSCIYYVGAKDQRSRLFS--QEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESV--LAR 1143 (2240)
Q Consensus 1073 ~Ps--lkVvvy~GskdeRk~l~~--qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~~SK--lsk 1143 (2240)
+++ +.|+...|-...+.+... ........||+|+|++.++.+... |.--+..|+|||||+||.+...+ +..
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 975 566666776554443321 112234569999999999988653 33446789999999999874433 223
Q ss_pred HhhccccceEEEeecC-------CCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000099 1144 DLDRYRCQRRLLLTGT-------PLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGT-------PLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~li 1216 (2240)
.+.......++.+++- |...-+.++.+.+.-+
T Consensus 319 v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~----------------------------------------- 357 (620)
T KOG0350|consen 319 VMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL----------------------------------------- 357 (620)
T ss_pred HHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc-----------------------------------------
Confidence 3333333323222211 1111112222211100
Q ss_pred HHHHHHHhhHHHHHhhhhh---hccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHH
Q 000099 1217 IHRLHQILEPFMLRRRVED---VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293 (2240)
Q Consensus 1217 i~RLhklLrPFmLRRlKkD---VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~s 1293 (2240)
...|.+++.+-.|.+.-.. +.-..|........ + + +...+-
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~--~----------~---~ryslp--------------------- 401 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP--L----------I---GRYSLP--------------------- 401 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc--c----------c---eeeecC---------------------
Confidence 1112222222222221111 11122321111100 0 0 000000
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHH----hcCc
Q 000099 1294 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL 1369 (2240)
Q Consensus 1294 L~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~----~rGi 1369 (2240)
..+.. +.+...+ --|-..+..++.. ....++|+|++.......|...|+ ...+
T Consensus 402 --~~l~~-~~vv~~~------------------~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 402 --SSLSH-RLVVTEP------------------KFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred --hhhhh-ceeeccc------------------ccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 00000 0000000 0122233334433 346799999999888877777766 4466
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
++..++|..+.+.|.+++.+|+.++.. +||+++++++|+|+.++|.||+||+|-.-..|+||+||+.|.||...+.
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEE
Confidence 677799999999999999999987766 7999999999999999999999999999999999999999999987764
No 63
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=4.3e-20 Score=221.44 Aligned_cols=318 Identities=20% Similarity=0.279 Sum_probs=222.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCC----CeEEEechHHHHHH----HHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYG----PHLIIVPNAVLVNW----KSEL 1069 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-kg~~G----P~LIVVP~SLL~QW----~~Ef 1069 (2240)
..+.|-|..++..++. +....+-..||+|||+..+..+...+.. ..... -.|||.|+..|.-. ...|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 3788999999988886 7778888999999999999988776632 22222 35999999865443 3446
Q ss_pred HHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----hhhccccCcceEecccccccCCc--hhHHHH
Q 000099 1070 HKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDR--ESVLAR 1143 (2240)
Q Consensus 1070 ~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----~s~L~kikWd~VIIDEAHrLKN~--~SKlsk 1143 (2240)
..+++++++..+.|+......+- .+.....+|+|.|++.+..- ...+......++|+|||+++... ...+..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~--~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ 180 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK--TFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNT 180 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH--HHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHH
Confidence 66679999999999866554432 34556789999999988654 33466567889999999999753 344555
Q ss_pred HhhccccceEE-EeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1144 DLDRYRCQRRL-LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1144 aLk~Lks~~RL-LLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
.|..+...+|- |+|||-.+. ..+| ..
T Consensus 181 ILs~LPKQRRTGLFSATq~~~-v~dL---~r------------------------------------------------- 207 (567)
T KOG0345|consen 181 ILSFLPKQRRTGLFSATQTQE-VEDL---AR------------------------------------------------- 207 (567)
T ss_pred HHHhcccccccccccchhhHH-HHHH---HH-------------------------------------------------
Confidence 66666655554 356662100 0000 00
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
+-|| ..+...|... ..
T Consensus 208 ----aGLR-----------Npv~V~V~~k-------------------------~~------------------------ 223 (567)
T KOG0345|consen 208 ----AGLR-----------NPVRVSVKEK-------------------------SK------------------------ 223 (567)
T ss_pred ----hhcc-----------Cceeeeeccc-------------------------cc------------------------
Confidence 0011 0000000000 00
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCH
Q 000099 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSL 1380 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~ 1380 (2240)
.+.|.-.. ..-..+...-|+..|..+|.. ...+|+|||..+....++....|... .+.++.+||.++.
T Consensus 224 --~~tPS~L~------~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 224 --SATPSSLA------LEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred --ccCchhhc------ceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00000000 000122334577777777775 55789999999999999888877654 6789999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1381 eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
..|..+++.|...... +|+||+++++|||++++|.||.||||-+|..+.||.||+.|.|......|+.+
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999999999973333 79999999999999999999999999999999999999999999988777755
No 64
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.86 E-value=2.5e-20 Score=225.50 Aligned_cols=313 Identities=21% Similarity=0.228 Sum_probs=217.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-----CeEEEechHHH-HHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-----PHLIIVPNAVL-VNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G-----P~LIVVP~SLL-~QW~~Ef~Kw~ 1073 (2240)
.+.+.|..+|...+. +...|-|.-||+|||+..+..++..+.. ..|. -+|||.|+..| .|-..-+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r-~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYR-LKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHH-cCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 577889999888876 7777889999999999988765544332 2232 47999999855 45555555543
Q ss_pred --CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhccccCcceEecccccccCCchh--HHHHHhh
Q 000099 1074 --PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRES--VLARDLD 1146 (2240)
Q Consensus 1074 --PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrLKN~~S--KlskaLk 1146 (2240)
..+.+..+.|+.+.... ..+....+|+|||++.|..+. ..|.--...++|+|||+||....- .+-..+.
T Consensus 166 k~h~fSaGLiiGG~~~k~E----~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFE----LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIE 241 (758)
T ss_pred hccccccceeecCchhHHH----HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHH
Confidence 35677777777664432 234567899999999998764 345556789999999999976432 3344445
Q ss_pred cccc-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1147 RYRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1147 ~Lks-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
.+.. +..||+|||+. ++..||.- |++-+|.+..-. . +
T Consensus 242 ~lP~~RQTLLFSATqt-~svkdLaR-LsL~dP~~vsvh-------e----------~----------------------- 279 (758)
T KOG0343|consen 242 NLPKKRQTLLFSATQT-KSVKDLAR-LSLKDPVYVSVH-------E----------N----------------------- 279 (758)
T ss_pred hCChhheeeeeecccc-hhHHHHHH-hhcCCCcEEEEe-------c----------c-----------------------
Confidence 5543 45899999983 33344422 111222211000 0 0
Q ss_pred HHHHHhhhhhhccCCCCc-eEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1226 PFMLRRRVEDVEGSLPPK-VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~K-vE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
.+. ..|.. ....+
T Consensus 280 ---------a~~-atP~~L~Q~y~-------------------------------------------------------- 293 (758)
T KOG0343|consen 280 ---------AVA-ATPSNLQQSYV-------------------------------------------------------- 293 (758)
T ss_pred ---------ccc-cChhhhhheEE--------------------------------------------------------
Confidence 000 00000 00011
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLED 1382 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eE 1382 (2240)
++....|+.+|-..|.... ..|.|||......+.++.+.|... |++...|+|.+++..
T Consensus 294 ------------------~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~ 353 (758)
T KOG0343|consen 294 ------------------IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKK 353 (758)
T ss_pred ------------------EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHH
Confidence 1122235555555555432 458999999999999988887654 899999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1383 ReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
|.++..+|.. .-.++|+||+++++|||++.+|+||-||.|-+...|+||.||+.|.+...+..++..
T Consensus 354 R~ev~~~F~~---~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 354 RIEVYKKFVR---KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred HHHHHHHHHH---hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc
Confidence 9999999986 334699999999999999999999999999999999999999999999988877755
No 65
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=5.2e-20 Score=215.07 Aligned_cols=314 Identities=19% Similarity=0.198 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH-HHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS-ELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~-Ef~Kw~--Psl 1076 (2240)
+..|.|..++..++. +.+||=|.-||+|||......|..-+...+..--.||++|+.-+.-... .|.... -++
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 567899999999998 8899999999999999887777766654555456799999986654444 454332 357
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh------hccccCcceEecccccccCCchh--HHHHHhhcc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS------KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRY 1148 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s------~L~kikWd~VIIDEAHrLKN~~S--KlskaLk~L 1148 (2240)
++.+++|+.+.-.+ ......+.||||+|++.+..... .....+..++|+|||+++.+..- .+.-....+
T Consensus 105 K~~vivGG~d~i~q---a~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l 181 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQ---AAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL 181 (442)
T ss_pred eEEEEEccHHHhhh---hhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC
Confidence 88888887665432 23456789999999999865421 12223568999999999976422 122222233
Q ss_pred ccc-eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 RCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 ks~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
... ..|+||||- .+++.+| |..|+.+...
T Consensus 182 P~~RQtLlfSATi-td~i~ql---------------------~~~~i~k~~a---------------------------- 211 (442)
T KOG0340|consen 182 PKPRQTLLFSATI-TDTIKQL---------------------FGCPITKSIA---------------------------- 211 (442)
T ss_pred CCccceEEEEeeh-hhHHHHh---------------------hcCCcccccc----------------------------
Confidence 333 579999992 3332222 2222111000
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
..++. .+ -.+.-..+|.
T Consensus 212 ------~~~e~-~~----------~vstvetL~q---------------------------------------------- 228 (442)
T KOG0340|consen 212 ------FELEV-ID----------GVSTVETLYQ---------------------------------------------- 228 (442)
T ss_pred ------eEEec-cC----------CCCchhhhhh----------------------------------------------
Confidence 00000 00 0000000110
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~a-tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
...++...+|-.+|..+|..... .+..++||++.+..+.+|...|+..++....+|+-|++.+|..+
T Consensus 229 ------------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 229 ------------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred ------------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 00112223456667777777655 56789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+-+|+++... +|++|+++++|||+++++.||+||.|-.|..|+||.||+.|.|......
T Consensus 297 LsrFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ai 355 (442)
T KOG0340|consen 297 LSRFRSNAAR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAI 355 (442)
T ss_pred HHHHhhcCcc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceE
Confidence 9999986655 8999999999999999999999999999999999999999999887753
No 66
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=226.58 Aligned_cols=342 Identities=20% Similarity=0.257 Sum_probs=220.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--------hCCCCC-eEEEechHHHH-HHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--------KGNYGP-HLIIVPNAVLV-NWKSEL 1069 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~--------kg~~GP-~LIVVP~SLL~-QW~~Ef 1069 (2240)
..-|.|..++--++. +.+.|...|+|+|||...+..|...+.. +...|| .+|++|+.-|. |...|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 456788888876665 7788999999999997766554433322 222344 58888998655 466777
Q ss_pred HHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHh
Q 000099 1070 HKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1070 ~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
.+|.. +++++.+.|+..-..+-| -.....+|+|.|++.|+... ..|..-...|||+|||++|....
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f---qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg------- 412 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF---QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG------- 412 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh---hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc-------
Confidence 77753 467777777654332211 12456799999999998653 34555678999999999985411
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
|. .++..+|..+ |..+... +.+..+.++ ++.+.+
T Consensus 413 --fE----------------~dv~~iL~~m-----------------Pssn~k~----~tde~~~~~------~~~~~~- 446 (673)
T KOG0333|consen 413 --FE----------------PDVQKILEQM-----------------PSSNAKP----DTDEKEGEE------RVRKNF- 446 (673)
T ss_pred --cc----------------HHHHHHHHhC-----------------CccccCC----CccchhhHH------HHHhhc-
Confidence 10 0111111111 1111100 000111111 111111
Q ss_pred HHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
.-. | --.........|++.-..+-+.++..-..... +. .. -
T Consensus 447 --~~~--k-------~yrqT~mftatm~p~verlar~ylr~pv~vti-g~----~g-----------------------k 487 (673)
T KOG0333|consen 447 --SSS--K-------KYRQTVMFTATMPPAVERLARSYLRRPVVVTI-GS----AG-----------------------K 487 (673)
T ss_pred --ccc--c-------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEe-cc----CC-----------------------C
Confidence 000 0 00112233345555444443333222111000 00 00 0
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHH
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERee 1385 (2240)
++|.+. -.-+.+..+.|+..|..||... ....+|||.+....+|.|++.|...||.+++|||+-++++|+.
T Consensus 488 ~~~rve-------Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 488 PTPRVE-------QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred Cccchh-------eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 111110 0112345567888899988875 4679999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+|..|+.+..+ ||++|+++|+|||++++.+||+||..-+...|.|||||++|.|+...+..|+-
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt 622 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLT 622 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEec
Confidence 99999987777 89999999999999999999999999999999999999999999888766543
No 67
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=1.1e-21 Score=201.51 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
+.+.|+++++.|...+|++||.++++|+.+|+|+++||||++ |++||||.+|++||++ |.++.+|..||.|||+||+
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~i-I~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKI-IKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHH-hcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999 9999999999999998 9999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLK 2043 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k 2043 (2240)
.||+++|.+|.+|..|+++|.+++.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999875
No 68
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=1.4e-19 Score=238.70 Aligned_cols=316 Identities=18% Similarity=0.130 Sum_probs=200.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slk 1077 (2240)
+|+|+|.+++.-+ +..+.|.|++.+||+|||+++...+...+. ..+.+|||+|.. |+.++..+|.++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 6999999999753 335789999999999999998766655443 346899999976 77888899988754 678
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCch--hHHHHHhhcc----c
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY----R 1149 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L----k 1149 (2240)
+.++.|..+.... .....+|+|+|++.+...... ..-...++|||||+|.+.+.. ..+-..+..+ .
T Consensus 97 v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 97 VGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 8888886543322 124579999999987432211 111256999999999997532 2222222222 3
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
..+.++||||. .+..++.. |+...+... ..+|.-
T Consensus 171 ~~qii~lSATl--~n~~~la~------------------wl~~~~~~~-------------------------~~rpv~- 204 (737)
T PRK02362 171 DLQVVALSATI--GNADELAD------------------WLDAELVDS-------------------------EWRPID- 204 (737)
T ss_pred CCcEEEEcccC--CCHHHHHH------------------HhCCCcccC-------------------------CCCCCC-
Confidence 34689999996 23444433 332110000 000100
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
....+... . ...... .. + .
T Consensus 205 --------------l~~~v~~~-~--------------~~~~~~--~~------------------------~------~ 223 (737)
T PRK02362 205 --------------LREGVFYG-G--------------AIHFDD--SQ------------------------R------E 223 (737)
T ss_pred --------------CeeeEecC-C--------------eecccc--cc------------------------c------c
Confidence 00000000 0 000000 00 0 0
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc----------------------
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1367 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r---------------------- 1367 (2240)
+ ....+...+ .++......++++||||..+..++.++..|...
T Consensus 224 ~--------------~~~~~~~~~-~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (737)
T PRK02362 224 V--------------EVPSKDDTL-NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288 (737)
T ss_pred C--------------CCccchHHH-HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 0 000011111 122223346789999999998877776666432
Q ss_pred --------------CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cC-----C
Q 000099 1368 --------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-----P 1424 (2240)
Q Consensus 1368 --------------Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD-----~ 1424 (2240)
...+..+||+++.++|..+.+.|+++... +|++|++++.|||+++.++||. || .
T Consensus 289 ~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~ 365 (737)
T PRK02362 289 VSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQ 365 (737)
T ss_pred ccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCce
Confidence 12466789999999999999999975544 7999999999999999988886 77 5
Q ss_pred CCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1425 DPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1425 pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
|.+...|.|++|||+|.|....-.++.+
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~G~~ii~ 393 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPYGEAVLL 393 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCCceEEEE
Confidence 7889999999999999998744334434
No 69
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=1.4e-21 Score=199.56 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
+++.|++|++.|...+|.+||.++.+|+++|++.++||||++ |++||||.+|++||++++|.++.+|..||+|||.||+
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVI-IKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
.||+++|.+|.+|+.|+++|.++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 70
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.85 E-value=4.7e-20 Score=222.66 Aligned_cols=314 Identities=22% Similarity=0.312 Sum_probs=213.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechHHH-HHHHH---HHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNAVL-VNWKS---ELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~SLL-~QW~~---Ef~K 1071 (2240)
+|.+-|...+.-++. +...+.+.-||+|||+..+..+..++.... ..--+|||||+..| .|-.. ++.+
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 688888888877665 668899999999999998887666553211 11247999999865 44444 4555
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCc--hhHHHHHhh
Q 000099 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDR--ESVLARDLD 1146 (2240)
Q Consensus 1072 w~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~--~SKlskaLk 1146 (2240)
+.++..+.+..|+...+... +.+.. ..+++|.|++.|..+... |.....+++|||||+|+... .--+-+.+.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~--~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEA--DKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred hCCCcceEEEeCCccchHHH--HHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 66778887777766544332 22333 889999999999877433 22234579999999999642 233444444
Q ss_pred cccc-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1147 RYRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1147 ~Lks-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
.+.. ...+++|||- .....+ |..+
T Consensus 257 ~lpk~rqt~LFSAT~-~~kV~~----------------------------------------------------l~~~-- 281 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQ-PSKVKD----------------------------------------------------LARG-- 281 (543)
T ss_pred hccccceeeEeeCCC-cHHHHH----------------------------------------------------HHHH--
Confidence 4433 3357777772 000000 0000
Q ss_pred HHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
.|+| | ...|.|. + ..... ....+.+-
T Consensus 282 --~L~~---d---------~~~v~~~--------------------d-~~~~~------------------The~l~Qg- 307 (543)
T KOG0342|consen 282 --ALKR---D---------PVFVNVD--------------------D-GGERE------------------THERLEQG- 307 (543)
T ss_pred --hhcC---C---------ceEeecC--------------------C-CCCcc------------------hhhcccce-
Confidence 0000 0 0011110 0 00000 00001110
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHH
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERee 1385 (2240)
-.+.....+|-+|..+|.+.... .||||||....+..++.+.|+...+++..|||..++..|..
T Consensus 308 ---------------yvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 308 ---------------YVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred ---------------EEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 00112234567777777776543 89999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+..+|...++. ||+||+++++|+|++++|.||-||+|-+|..|+||+||++|-|-+.+..
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~al 431 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKAL 431 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEE
Confidence 99999987776 8999999999999999999999999999999999999999988766543
No 71
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=5e-20 Score=225.67 Aligned_cols=313 Identities=21% Similarity=0.284 Sum_probs=213.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH-HHHHHHhC---------CCCCeEEEechH-HHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI-AYLMEFKG---------NYGPHLIIVPNA-VLVNWKSE 1068 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALI-a~Lle~kg---------~~GP~LIVVP~S-LL~QW~~E 1068 (2240)
.+.|+|+.++.-+.. +++.+.|..||+|||...+..| .++++... .....||++|++ |+.|-.+|
T Consensus 96 ~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 678999999876665 8888999999999999988855 45554321 235689999988 77889999
Q ss_pred HHHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc---hhHH
Q 000099 1069 LHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVL 1141 (2240)
Q Consensus 1069 f~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~---~SKl 1141 (2240)
..++.- .+++++.+|..+.+... ......+||+|+|.+.+..-. ..+..-...|+|||||++|... .-.+
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~---~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQL---RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhh---hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccH
Confidence 999863 46666666665555443 234678999999999987542 3333345569999999999651 2223
Q ss_pred HHHhhcc-----ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000099 1142 ARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216 (2240)
Q Consensus 1142 skaLk~L-----ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~li 1216 (2240)
.+.+... ....-+++|||= ...+..
T Consensus 249 r~iv~~~~~~~~~~~qt~mFSAtf-p~~iq~------------------------------------------------- 278 (482)
T KOG0335|consen 249 RKIVEQLGMPPKNNRQTLLFSATF-PKEIQR------------------------------------------------- 278 (482)
T ss_pred HHHhcccCCCCccceeEEEEeccC-Chhhhh-------------------------------------------------
Confidence 3333322 123345666651 111111
Q ss_pred HHHHHHHhhHHHHH----hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHH
Q 000099 1217 IHRLHQILEPFMLR----RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292 (2240)
Q Consensus 1217 i~RLhklLrPFmLR----RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~ 1292 (2240)
+...|+.- -...-|..........+++|.
T Consensus 279 ------l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~----------------------------------------- 311 (482)
T KOG0335|consen 279 ------LAADFLKDNYIFLAVGRVGSTSENITQKILFVN----------------------------------------- 311 (482)
T ss_pred ------hHHHHhhccceEEEEeeeccccccceeEeeeec-----------------------------------------
Confidence 11111100 000000111111112222222
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-------cCCeEEEEecchhHHHHHHHHHH
Q 000099 1293 TLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-------TGHRVLLFSTMTKLLDILEEYLQ 1365 (2240)
Q Consensus 1293 sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~a-------tGhKVLIFSQ~t~~LDiLed~L~ 1365 (2240)
...|...|..+|..... ..++++||+.....++.|+.+|.
T Consensus 312 ---------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 312 ---------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred ---------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 11222222223322220 13589999999999999999999
Q ss_pred hcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1366 ~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
..++++.-|||.-++.+|.++|+.|+.+... +||+|.++++|||+..+++||+||.|-+-..|+|||||++|.|+..
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCc
Confidence 9999999999999999999999999987666 7999999999999999999999999999999999999999999998
Q ss_pred eEEEEEE
Q 000099 1446 EVKVIYM 1452 (2240)
Q Consensus 1446 eV~VyrL 1452 (2240)
.++.+.-
T Consensus 436 ~atsf~n 442 (482)
T KOG0335|consen 436 RATSFFN 442 (482)
T ss_pred eeEEEec
Confidence 8877654
No 72
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.84 E-value=3.9e-21 Score=196.60 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000099 1943 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2022 (2240)
Q Consensus 1943 ck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~ 2022 (2240)
.-.|+..|++.+|++||.++..|+.+|++.++||||++ |++||||.+|..||++++|.++.+|..||.|||.||+.||+
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQE-IKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34788889999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 000099 2023 FSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2023 ~~sev~~dA~~L~~~F~~~ 2041 (2240)
++|.+|.+|+.|+++|..+
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 73
>PRK01172 ski2-like helicase; Provisional
Probab=99.83 E-value=9.8e-19 Score=228.79 Aligned_cols=304 Identities=20% Similarity=0.188 Sum_probs=193.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-sl 1076 (2240)
.+|+|+|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|+|+|.. |+.++.++|.+|.. ++
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999998764 37789999999999999987666555432 35789999976 67788888888653 56
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhh---ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLD---RYR 1149 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk---~Lk 1149 (2240)
++..+.|........ ....+|+|+|++.+..... ...-.++++|||||+|.+.+.. ..+-..+. .+.
T Consensus 94 ~v~~~~G~~~~~~~~------~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPDF------IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChhh------hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 777777764432211 2357999999987643211 1112357899999999996432 12222222 222
Q ss_pred -cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1150 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1150 -s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
..+.++||||.- +.. .|.+|+....... ..+|
T Consensus 168 ~~~riI~lSATl~--n~~------------------~la~wl~~~~~~~-------------------------~~r~-- 200 (674)
T PRK01172 168 PDARILALSATVS--NAN------------------ELAQWLNASLIKS-------------------------NFRP-- 200 (674)
T ss_pred cCCcEEEEeCccC--CHH------------------HHHHHhCCCccCC-------------------------CCCC--
Confidence 346799999962 222 3344443221000 0000
Q ss_pred HHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1229 LRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
.|-. ..+++.. .+| .+.. .
T Consensus 201 -----------vpl~-~~i~~~~------~~~----------~~~~-~-------------------------------- 219 (674)
T PRK01172 201 -----------VPLK-LGILYRK------RLI----------LDGY-E-------------------------------- 219 (674)
T ss_pred -----------CCeE-EEEEecC------eee----------eccc-c--------------------------------
Confidence 0100 0111000 000 0000 0
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc---------------------
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--------------------- 1367 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--------------------- 1367 (2240)
. .+. .+..++.+....++++||||..+..++.+...|...
T Consensus 220 -----------~-------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L 280 (674)
T PRK01172 220 -----------R-------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSL 280 (674)
T ss_pred -----------c-------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHH
Confidence 0 000 012233444456788999999988887777776542
Q ss_pred ----CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCC---------CCChhhHHHH
Q 000099 1368 ----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQA 1434 (2240)
Q Consensus 1368 ----Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~---------pWNP~~d~QA 1434 (2240)
...+..+||+++.++|..+.+.|+++..+ +|++|++++.|||+++ .+||++|. ++++..+.|+
T Consensus 281 ~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm 356 (674)
T PRK01172 281 NEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQM 356 (674)
T ss_pred HHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHH
Confidence 11355689999999999999999975444 7999999999999996 57777664 4578889999
Q ss_pred hhhhhccCCcce
Q 000099 1435 VARAHRIGQKRE 1446 (2240)
Q Consensus 1435 iGRAhRIGQKKe 1446 (2240)
+|||+|.|....
T Consensus 357 ~GRAGR~g~d~~ 368 (674)
T PRK01172 357 IGRAGRPGYDQY 368 (674)
T ss_pred hhcCCCCCCCCc
Confidence 999999996655
No 74
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.2e-20 Score=193.39 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
|+.+.++|++.|.+.+|++||.|+.+|+++|+|.++||||++ |++||||.+|++||+.++|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 80 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQE-ISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAK 80 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHH-hCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
.||+++|.+|.+|+.|+++|...
T Consensus 81 ~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 81 LYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999863
No 75
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.83 E-value=5.8e-19 Score=213.75 Aligned_cols=296 Identities=16% Similarity=0.170 Sum_probs=185.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhH-----------h
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQR-----------S 1089 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy~GskdeR-----------k 1089 (2240)
.++..+||+|||.+++.++...+. ....+++++|+|.. ++.++.+.+..++.. .+..++|..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 478899999999999988887664 34567899999965 778899999998764 344444433210 0
Q ss_pred HHHHHHH----hhcCCcEEEEcHHHHHHhhhh--------ccccCcceEecccccccCCchh-HHHHHhhccc--cceEE
Q 000099 1090 RLFSQEV----AALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKDRES-VLARDLDRYR--CQRRL 1154 (2240)
Q Consensus 1090 ~l~~qei----~~~~fdVVITTYE~L~kD~s~--------L~kikWd~VIIDEAHrLKN~~S-KlskaLk~Lk--s~~RL 1154 (2240)
....... .....+|+|+|++.+...... +..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 1110000 113467999999988654222 2223447899999999975322 2333333332 34579
Q ss_pred EeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 000099 1155 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234 (2240)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKk 1234 (2240)
++|||+- ..+.. |...+......
T Consensus 160 ~~SATlp----~~l~~---------------~~~~~~~~~~~-------------------------------------- 182 (358)
T TIGR01587 160 LMSATLP----KFLKE---------------YAEKIGYVEFN-------------------------------------- 182 (358)
T ss_pred EEecCch----HHHHH---------------HHhcCCCcccc--------------------------------------
Confidence 9999952 11111 10000000000
Q ss_pred hhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000099 1235 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1314 (2240)
Q Consensus 1235 DVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~ 1314 (2240)
...+..... .+..|++....
T Consensus 183 ---~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~- 202 (358)
T TIGR01587 183 ---EPLDLKEER--------------------------------------------------------RFERHRFIKIE- 202 (358)
T ss_pred ---cCCCCcccc--------------------------------------------------------ccccccceeec-
Confidence 000000000 00000000000
Q ss_pred ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCc--eEEeecCCCCHHHHHH----HHH
Q 000099 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRES----AIV 1388 (2240)
Q Consensus 1315 ~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGi--ky~rLDGsTs~eERee----aIk 1388 (2240)
.....|...+..++.. ...+.++||||+....++.+...|...+. .+..+||.++..+|.+ +++
T Consensus 203 ---------~~~~~~~~~l~~l~~~-~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 203 ---------SDKVGEISSLERLLEF-IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred ---------cccccCHHHHHHHHHH-hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 0001234445555533 34578999999999999999999988776 4889999999999976 488
Q ss_pred HHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc----eEEEEEE
Q 000099 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR----EVKVIYM 1452 (2240)
Q Consensus 1389 ~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK----eV~VyrL 1452 (2240)
.|.++... +|+||+++++|||+ .+++||+++.+ +..++||+||++|.|.+. .|.||+.
T Consensus 273 ~f~~~~~~---ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 273 EMKKNEKF---VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred HhcCCCCe---EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 99864433 79999999999999 58999998876 789999999999999764 3555544
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.83 E-value=6.2e-18 Score=218.82 Aligned_cols=415 Identities=15% Similarity=0.182 Sum_probs=237.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||...+..++- +.|+|+...||.|||++++..+ ++.... ...++||+|+. |..+|..++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa-~l~aL~--g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPL-YLNALT--GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHH-HHHhhc--CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 378887777755543 3457999999999999987664 332222 23589999988 55666666655432 45
Q ss_pred eEEEEecc-hhh-HhHHHHHHHhhcCCcEEEEcHHHHHHh--hh-------hccccCcceEecccccccCCchhHHHHHh
Q 000099 1077 SCIYYVGA-KDQ-RSRLFSQEVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1077 kVvvy~Gs-kde-Rk~l~~qei~~~~fdVVITTYE~L~kD--~s-------~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
.+.+..+. ... .... .......++|+++|++.|..+ +. .+....+.++||||||.|.-
T Consensus 141 sv~~~~~~s~~~~~~~~--~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi--------- 209 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDAN--EKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL--------- 209 (762)
T ss_pred cEEEEECCCCccccCHH--HHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh---------
Confidence 55554432 111 1100 011224689999999988433 11 12224678999999999842
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhhcccccCC------------------hHHHHhhhcCCcccCCCCCCCChhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN------------------RKAFHDWFSQPFQKEGPTHNADDDW 1207 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S------------------~~sF~e~F~kPf~~~g~~~~~e~d~ 1207 (2240)
.. +...|++||.|-.. ..+|..++-+...+-.. .....+.|..+ + -.+
T Consensus 210 De--artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--~-----l~~--- 275 (762)
T TIGR03714 210 DS--AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--N-----LYS--- 275 (762)
T ss_pred cc--CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--c-----cCC---
Confidence 12 33458899977533 34666654332211110 00111112110 0 000
Q ss_pred HHHHHHHHHHHHHHHHhhHH-HHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHHh-
Q 000099 1208 LETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR- 1278 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~~- 1278 (2240)
.......+.+...|+.. ++.|-+.=+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 276 ---~~~~~~~~~i~~al~A~~~~~~d~dYiV~---~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a 348 (762)
T TIGR03714 276 ---EEYFELVRHINLALRAHYLFKRNKDYVVT---NGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMA 348 (762)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeee
Confidence 11112233444444443 33322221111 11111211 222 2334444555443322222111000
Q ss_pred -----hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEE
Q 000099 1279 -----RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348 (2240)
Q Consensus 1279 -----~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~atGhKVL 1348 (2240)
..+.......+...........|.++-+.+.+..|..... ..........|+..+...+..+...+..||
T Consensus 349 ~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvL 428 (762)
T TIGR03714 349 SITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVL 428 (762)
T ss_pred eeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEE
Confidence 0000000000000011122345566665555444432211 111223345688888888888888899999
Q ss_pred EEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC---------CCCeE
Q 000099 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---------SADTV 1419 (2240)
Q Consensus 1349 IFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ---------aADtV 1419 (2240)
|||..+...+.|...|...|+++..|+|.+...+|..+...|+.+ -++|+|+.+|+|+|+. ..++|
T Consensus 429 Ift~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g-----~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG-----AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC-----eEEEEccccccccCCCCCccccccCCeEEE
Confidence 999999999999999999999999999999988887766666532 2799999999999999 88999
Q ss_pred EEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
|.|+++-+... .|+.||++|.|.+..+..| ++.++.++.
T Consensus 504 it~~~ps~rid-~qr~GRtGRqG~~G~s~~~--is~eD~l~~ 542 (762)
T TIGR03714 504 GTERMENSRVD-LQLRGRSGRQGDPGSSQFF--VSLEDDLIK 542 (762)
T ss_pred EecCCCCcHHH-HHhhhcccCCCCceeEEEE--Eccchhhhh
Confidence 99999987655 9999999999988775443 444555543
No 77
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=9.1e-19 Score=211.91 Aligned_cols=121 Identities=23% Similarity=0.395 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhc----------------------CceEEeecCCCCHHHHH
Q 000099 1329 KLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR----------------------QLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1329 KLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~r----------------------Giky~rLDGsTs~eERe 1384 (2240)
++..|..+|.... ....|+|||...+++++.=.+.|... +.++.+|||+|++++|.
T Consensus 408 RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 4445556665543 23458999999998887766555321 45699999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.++..|.... ..+|+||+++++||||+.++.||-||+|..+..|++|+||+.|+|.+.+...|-+
T Consensus 488 s~f~~Fs~~~---~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 488 SVFQEFSHSR---RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLL 552 (708)
T ss_pred HHHHhhcccc---ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEec
Confidence 9999998633 3489999999999999999999999999999999999999999999988766655
No 78
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.2e-19 Score=206.73 Aligned_cols=305 Identities=18% Similarity=0.228 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHC--CCCeEE
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWL--PSVSCI 1079 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~Kw~--PslkVv 1079 (2240)
..|..++..++. +.+.|.-...|+|||.+...-++.......+.-.+||+.|+..|.- ...-+.... -++.+.
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 457888887776 8888999999999998753333332222333346899999986654 444444443 256777
Q ss_pred EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCc--hhHHHHHhhccc-cceEE
Q 000099 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQRRL 1154 (2240)
Q Consensus 1080 vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s~~RL 1154 (2240)
.+.|+...-..+. ......+||..|++.+.+. +..|.-...+++|+|||+.|.|. ..+++...+.+. ....+
T Consensus 128 acigg~n~gedik---kld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv 204 (400)
T KOG0328|consen 128 ACIGGKNLGEDIK---KLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVV 204 (400)
T ss_pred EEecCCccchhhh---hhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEE
Confidence 7777765433332 1224568999999998765 34566678899999999999764 456777777776 55689
Q ss_pred EeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 000099 1155 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234 (2240)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKk 1234 (2240)
++|||- ..|+..+.++.+++.
T Consensus 205 ~~SATl----p~eilemt~kfmtdp------------------------------------------------------- 225 (400)
T KOG0328|consen 205 LVSATL----PHEILEMTEKFMTDP------------------------------------------------------- 225 (400)
T ss_pred EEeccC----cHHHHHHHHHhcCCc-------------------------------------------------------
Confidence 999994 233333333322221
Q ss_pred hhccCCCCceEEEEEe-ccCHH-HHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1235 DVEGSLPPKVSIVLRC-RMSAI-QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1235 DVekdLP~KvE~vV~c-~LS~~-Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
+...++- .++.+ -+.+|-.+ +.
T Consensus 226 ---------vrilvkrdeltlEgIKqf~v~v--------e~--------------------------------------- 249 (400)
T KOG0328|consen 226 ---------VRILVKRDELTLEGIKQFFVAV--------EK--------------------------------------- 249 (400)
T ss_pred ---------eeEEEecCCCchhhhhhheeee--------ch---------------------------------------
Confidence 1111110 01110 00111000 00
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs 1392 (2240)
..=|+..|..+-..| +=...+|||+.....|+|.+.++..++.+..+||.+++++|.+++.+|++
T Consensus 250 -------------EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs 314 (400)
T KOG0328|consen 250 -------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS 314 (400)
T ss_pred -------------hhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc
Confidence 000233333332222 12368999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1393 ~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
+.+. +|++|++-++|+|+|.++.||+||+|-|+..|+||+||.+|.|.+.-+
T Consensus 315 g~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 315 GKSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred CCce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE
Confidence 8887 899999999999999999999999999999999999999999976543
No 79
>PRK00254 ski2-like helicase; Provisional
Probab=99.82 E-value=2.4e-18 Score=226.60 Aligned_cols=314 Identities=16% Similarity=0.104 Sum_probs=193.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slk 1077 (2240)
+|+|+|.+++.- .+..+.|.|++.+||+|||+++...|...+.. ..+.+|+|||.. ++.++..+|.+|.. +++
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 799999999963 22347899999999999999985554433321 246899999976 67888888888753 577
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhccc-cce
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1152 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lk-s~~ 1152 (2240)
+..++|.-..... .....+|+|+|++.+...... ..-.++++|||||+|.+.. ....+...+..+. ..+
T Consensus 98 v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~q 171 (720)
T PRK00254 98 VAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQ 171 (720)
T ss_pred EEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCc
Confidence 8888886543221 124679999999987543211 0113578999999999964 3334444444443 456
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.++||||.- +..++ .+|+....... ..+|.
T Consensus 172 iI~lSATl~--n~~~l------------------a~wl~~~~~~~-------------------------~~rpv----- 201 (720)
T PRK00254 172 ILGLSATVG--NAEEL------------------AEWLNAELVVS-------------------------DWRPV----- 201 (720)
T ss_pred EEEEEccCC--CHHHH------------------HHHhCCccccC-------------------------CCCCC-----
Confidence 899999962 23443 33332211000 00000
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
|-. ..+... ........ ... .+
T Consensus 202 --------~l~--~~~~~~---------------~~~~~~~~-~~~--------------~~------------------ 223 (720)
T PRK00254 202 --------KLR--KGVFYQ---------------GFLFWEDG-KIE--------------RF------------------ 223 (720)
T ss_pred --------cce--eeEecC---------------CeeeccCc-chh--------------cc------------------
Confidence 000 000000 00000000 000 00
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh--------------------------
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-------------------------- 1366 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~-------------------------- 1366 (2240)
...+..++.++...+.++||||..+..++.++..|..
T Consensus 224 -----------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (720)
T PRK00254 224 -----------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPT 286 (720)
T ss_pred -----------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Confidence 0001112223334578899999888776655444321
Q ss_pred -------cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-------cCCCC-ChhhH
Q 000099 1367 -------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDP-NPKNE 1431 (2240)
Q Consensus 1367 -------rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi-------fD~pW-NP~~d 1431 (2240)
....+..+||+++.++|..+.+.|+++... +|++|++++.|||+++.++||. |+.++ ....+
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~ 363 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEI 363 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHH
Confidence 123477799999999999999999975544 7999999999999999888884 33333 34578
Q ss_pred HHHhhhhhccCCcceEEEEEE
Q 000099 1432 EQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.|++|||+|.|....-.++.+
T Consensus 364 ~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 364 QQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred HHhhhccCCCCcCCCceEEEE
Confidence 999999999886554444444
No 80
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.82 E-value=1.4e-18 Score=226.52 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=86.3
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH-----HHHHHHhc----CC----CCccEEEEeccccc
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-----SAIVDFNS----HD----SDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe-----eaIk~FNs----~D----s~~fVfLLSTrAGG 1408 (2240)
..+.++||||+.+..++.|.+.|...++ ..|||.+++.+|. .++++|.. +. .+-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4567999999999999999999998887 8899999999999 78999975 21 01135799999999
Q ss_pred ccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1409 eGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
+|||+.. ++||+++.|+ ..|+||+||++|.|.....
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 9999985 9999988774 7999999999999986544
No 81
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=1.7e-18 Score=219.69 Aligned_cols=357 Identities=17% Similarity=0.204 Sum_probs=227.6
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCC-CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHC
Q 000099 996 LRAGTLRDYQIVGLQWMLSLYNNK-LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWL 1073 (2240)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~n~-lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~Kw~ 1073 (2240)
+....+|+||..++..++..+.++ ...||++.||+|||.+||++|..|+. .+..+++|+++- ++|+.|-..+|..|.
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhC
Confidence 344689999999999999888654 44799999999999999999999986 667789999997 668899999999999
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh-------hhccccCcceEecccccccCCchhHHHHHhh
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-------SKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~-------s~L~kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
|....+....... ....+.|+|+||.++.... ..+..-.||+||||||||- ....++.+.
T Consensus 240 P~~~~~n~i~~~~----------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~ 306 (875)
T COG4096 240 PFGTKMNKIEDKK----------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSIL 306 (875)
T ss_pred CCccceeeeeccc----------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHHH
Confidence 9876554433221 1225799999999998643 2344457999999999994 344455666
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
.|-...+++|||||-..--.+-+.+|+ ..|...+. |...+
T Consensus 307 dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Ys---------------------leeAV-- 346 (875)
T COG4096 307 DYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYS---------------------LEEAV-- 346 (875)
T ss_pred HHHHHHHHhhccCcccccccccccccC-----------------CCcceeec---------------------HHHHh--
Confidence 666677788899996532222222221 22222110 00000
Q ss_pred HHHHhhhhhhccCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1227 FMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~Kv-E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
+..++ .|.+. ...+.+....+ ..+...+....... ..
T Consensus 347 ------~DGfL--vpy~vi~i~~~~~~~G~--------------~~~~~serek~~g~--------------------~i 384 (875)
T COG4096 347 ------EDGFL--VPYKVIRIDTDFDLDGW--------------KPDAGSEREKLQGE--------------------AI 384 (875)
T ss_pred ------hcccc--CCCCceEEeeeccccCc--------------CcCccchhhhhhcc--------------------cc
Confidence 00111 12211 12222211110 00000000000000 00
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc---C---CeEEEEecchhHHHHHHHHHHhc-----CceEEee
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---G---HRVLLFSTMTKLLDILEEYLQWR-----QLVYRRI 1374 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~at---G---hKVLIFSQ~t~~LDiLed~L~~r-----Giky~rL 1374 (2240)
+.. ...++....+..+......+.+.+.|...... | .|.||||....+++.|...|... |--+..|
T Consensus 385 ~~d---d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 385 DED---DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred Ccc---cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 000 00000011111122223345555555555444 3 58999999999999999999765 2335678
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccC-------Ccce-
Q 000099 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG-------QKRE- 1446 (2240)
Q Consensus 1375 DGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIG-------QKKe- 1446 (2240)
+|.... =+..|+.|-. ..++..|.+|.+.+.+|||++.|-.+||+-.-.+-..|.|.+||+-|+. |.|+
T Consensus 462 T~d~~~--~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~ 538 (875)
T COG4096 462 TGDAEQ--AQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEF 538 (875)
T ss_pred eccchh--hHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCcccccee
Confidence 887654 4567888876 5677789999999999999999999999999999999999999999973 4444
Q ss_pred EEEEEEeh
Q 000099 1447 VKVIYMEA 1454 (2240)
Q Consensus 1447 V~VyrLvT 1454 (2240)
..|+.++-
T Consensus 539 F~ifDf~~ 546 (875)
T COG4096 539 FTIFDFVD 546 (875)
T ss_pred EEEEEhhh
Confidence 56677654
No 82
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=6e-17 Score=207.74 Aligned_cols=413 Identities=17% Similarity=0.199 Sum_probs=229.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kw~ 1073 (2240)
|...+|-|+.|+--++. + .|.-..||.|||++++..+..... . ...++||+|+..|.+ |...|.+++
T Consensus 101 g~~p~~VQ~~~~~~ll~----G--~Iae~~TGeGKTla~~lp~~~~al-~--G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 101 GQRHFDVQLMGGLALLS----G--RLAEMQTGEGKTLTATLPAGTAAL-A--GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCCChHHHHHHHHHhC----C--CeeeeeCCCCcHHHHHHHHHHHhh-c--CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 44666779988876664 3 388899999999998766654432 2 247899999986643 666666655
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHH-----Hhhh-----------------------hccccCcce
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM-----YDRS-----------------------KLSKVDWKY 1125 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~-----kD~s-----------------------~L~kikWd~ 1125 (2240)
++++.++.|+..... .......+|+++|-.-|- .... .+-...+.+
T Consensus 172 -Glsv~~i~gg~~~~~-----r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 172 -GLTVGCVVEDQSPDE-----RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred -CCEEEEEeCCCCHHH-----HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 577777666543211 112346799999965442 2211 111246899
Q ss_pred EecccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHH----HHhhhcccc-cC----------C--h-HHHH
Q 000099 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS----LLNLLLPEV-FD----------N--R-KAFH 1187 (2240)
Q Consensus 1126 VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwS----LLnFLlP~i-F~----------S--~-~sF~ 1187 (2240)
+||||++-+. +.. +..-|++||.+-.....++|. +..-|..+. |. + . ....
T Consensus 246 aIvDEvDSiL---------iDe--artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e 314 (656)
T PRK12898 246 AIVDEADSVL---------IDE--ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIA 314 (656)
T ss_pred eEeeccccee---------ecc--CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHH
Confidence 9999999874 222 334588888553332234443 333332221 10 0 0 0001
Q ss_pred hhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH-HHHhhhhhhccCCCCceEEEEEeccC-------HHHHHH
Q 000099 1188 DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAI 1259 (2240)
Q Consensus 1188 e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~L 1259 (2240)
+.|.. +. ..|... ....+.+...|+.. ++.+-+.-| +.+....+| ...| .+..-+
T Consensus 315 ~~~~~-l~---------~~~~~~---~~~~~~i~~Al~A~~l~~~d~dYi---V~d~~V~iv-D~~TGR~~~gr~w~~GL 377 (656)
T PRK12898 315 ELAES-LP---------PAWRGA---VRREELVRQALSALHLFRRDEHYI---VRDGKVVIV-DEFTGRVMPDRSWEDGL 377 (656)
T ss_pred HHhCc-ch---------hhcccc---hHHHHHHHHHHHHHHHHhcCCceE---EECCeEEEE-ECCCCeECCCCCcChHH
Confidence 11100 00 000000 01122233333332 222222111 112222222 2322 233444
Q ss_pred HHHHHHccCcccCchhHHh------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hh-hHhhccc
Q 000099 1260 YDWIKATGTLRVDPEDEKR------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KD-FLVKSCG 1328 (2240)
Q Consensus 1260 Yk~L~~~~~l~ld~~~e~~------~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls----~d-~LirsSG 1328 (2240)
.+.+.....+.+....... ..+...........++......|.++-+-..+..|...... .. .......
T Consensus 378 hQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~ 457 (656)
T PRK12898 378 HQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAA 457 (656)
T ss_pred HHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHH
Confidence 4444433222222111100 00000000000001111223455555444333322221110 11 1223446
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000099 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1329 KLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG 1408 (2240)
|+..|..++..+...+..|||||..+..++.|...|...|+++..|||... +|+..+..|...... |||+|+.+|
T Consensus 458 K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATdmAg 532 (656)
T PRK12898 458 KWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATNMAG 532 (656)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEccchh
Confidence 888888888887777889999999999999999999999999999999865 555666666543444 899999999
Q ss_pred ccCCCC---CCC-----eEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhh
Q 000099 1409 RGLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1460 (2240)
Q Consensus 1409 eGLNLQ---aAD-----tVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~ 1460 (2240)
+|+|+. .+. +||+||.|-|...|.|++||++|.|....+..| ++.++.++
T Consensus 533 RGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--is~eD~l~ 590 (656)
T PRK12898 533 RGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--LSLEDDLL 590 (656)
T ss_pred cccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--echhHHHH
Confidence 999998 454 999999999999999999999999987666443 44455544
No 83
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=2.1e-19 Score=185.50 Aligned_cols=106 Identities=24% Similarity=0.387 Sum_probs=100.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhcc---CCCCCHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELVSDVQ 2011 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~---~eY~~v~ef~~Dvq 2011 (2240)
|++.-+++|.+|+.+|.. |..+..|+.++.+ ++|+||++ |++||||.+|++||+. +.|.++++|..||.
T Consensus 1 ~~~~~~~~c~~il~~l~~------~~~s~~F~~pv~~-~~p~Y~~i-I~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~ 72 (109)
T cd05502 1 LSPIDQRKCERLLLELYC------HELSLPFHEPVSP-SVPNYYKI-IKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVR 72 (109)
T ss_pred CCHHHHHHHHHHHHHHHh------CCCChhhcCCCCC-CCCCHHHH-CCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 567888999999999963 5889999999998 99999999 9999999999999998 59999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2012 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2012 LMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
|||.||+.||+++|.++.+|..|+++|..+|+.+|||
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 73 LMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999997
No 84
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.79 E-value=3.4e-19 Score=208.50 Aligned_cols=311 Identities=26% Similarity=0.351 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHH------hCCCCCe-EEEechHHHHHHHHHHH-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEF------KGNYGPH-LIIVPNAVLVNWKSELH- 1070 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~------kg~~GP~-LIVVP~SLL~QW~~Ef~- 1070 (2240)
...|.|..|+.-+++ +..-|=-.-||+|||+++...+.. .++. ....||+ |||||...|.....++-
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 355778888877776 555455556999999886654332 2221 2344665 99999986655444432
Q ss_pred HH--------CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--h
Q 000099 1071 KW--------LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--E 1138 (2240)
Q Consensus 1071 Kw--------~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~ 1138 (2240)
.| +|.++...+.|+...+.++ +......+|+|.|++.++... ..+...-..|+.+|||+||..- .
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql---~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE 344 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQL---DVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE 344 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHH---HHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch
Confidence 22 3778888888888777665 455678899999999997642 3344445789999999999652 3
Q ss_pred hHHHHHhhccccce-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHH
Q 000099 1139 SVLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1217 (2240)
Q Consensus 1139 SKlskaLk~Lks~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii 1217 (2240)
.-+...+..|+..+ .||+|||- |.- ...|..
T Consensus 345 ddir~iF~~FK~QRQTLLFSATM----------------P~K---IQ~FAk----------------------------- 376 (610)
T KOG0341|consen 345 DDIRTIFSFFKGQRQTLLFSATM----------------PKK---IQNFAK----------------------------- 376 (610)
T ss_pred hhHHHHHHHHhhhhheeeeeccc----------------cHH---HHHHHH-----------------------------
Confidence 33444444555554 67888882 100 000100
Q ss_pred HHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHH
Q 000099 1218 HRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297 (2240)
Q Consensus 1218 ~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~ni 1297 (2240)
..++.|. +|.+- ..+. .-++.
T Consensus 377 ---SALVKPv-------------------tvNVG-------------RAGA------------------------AsldV 397 (610)
T KOG0341|consen 377 ---SALVKPV-------------------TVNVG-------------RAGA------------------------ASLDV 397 (610)
T ss_pred ---hhcccce-------------------EEecc-------------cccc------------------------cchhH
Confidence 0011110 01100 0000 00011
Q ss_pred HHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCC
Q 000099 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377 (2240)
Q Consensus 1298 lmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGs 1377 (2240)
+.++- .+..-.|+ ..+|.-|..+.-.|||||.-..-.|.|.+||-..|+..+.|||+
T Consensus 398 iQevE--------------------yVkqEaKi---VylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGG 454 (610)
T KOG0341|consen 398 IQEVE--------------------YVKQEAKI---VYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGG 454 (610)
T ss_pred HHHHH--------------------HHHhhhhh---hhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecC
Confidence 11110 11122333 33455556788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1378 Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
..+++|...|+.|+.+..+ +|++|++++-|||+++..+||+||.|-.-.+|++||||++|-|.+.-.+.|
T Consensus 455 KDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 455 KDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred cchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeee
Confidence 9999999999999987777 899999999999999999999999999999999999999999988665544
No 85
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.3e-17 Score=210.55 Aligned_cols=307 Identities=19% Similarity=0.217 Sum_probs=225.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~PslkV 1078 (2240)
..|+-|.++++.++. +.+.|...+||.||++..-... ++ ..|.+|||.|. +|+.+.++.+... ++.+
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~--Gi~A 84 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAA--GIRA 84 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHc--Ccee
Confidence 688899999999987 7889999999999997764332 22 25799999995 6888888888874 3555
Q ss_pred EEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCC-------chhHHHHHhhc
Q 000099 1079 IYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD-------RESVLARDLDR 1147 (2240)
Q Consensus 1079 vvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN-------~~SKlskaLk~ 1147 (2240)
.....+ .+++..++. ....+..+++..++|.+... .+.|...+..+++|||||.+-. ....+......
T Consensus 85 ~~lnS~l~~~e~~~v~~-~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 85 AYLNSTLSREERQQVLN-QLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred ehhhcccCHHHHHHHHH-HHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh
Confidence 555443 455555443 45567789999999999865 4667788999999999999843 33445555556
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
|...-+++||||--.....|+...|..-.+.+|. ..|+.|-
T Consensus 164 ~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~------~sfdRpN--------------------------------- 204 (590)
T COG0514 164 LPNPPVLALTATATPRVRDDIREQLGLQDANIFR------GSFDRPN--------------------------------- 204 (590)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEE------ecCCCch---------------------------------
Confidence 6766799999997666666666666544443321 1111110
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
-.|.....
T Consensus 205 ------------------------------i~~~v~~~------------------------------------------ 212 (590)
T COG0514 205 ------------------------------LALKVVEK------------------------------------------ 212 (590)
T ss_pred ------------------------------hhhhhhhc------------------------------------------
Confidence 00000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
..++..++ -+.......+...||||..+..++.+..+|...|+....+||++..++|+.+-
T Consensus 213 ------------------~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q 273 (590)
T COG0514 213 ------------------GEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQ 273 (590)
T ss_pred ------------------ccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHH
Confidence 00000111 01111123345689999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++|..++.. ++++|.|.|.|||-+++.+|||||+|-+...|.|-+|||+|-|...++.+++-
T Consensus 274 ~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~ 335 (590)
T COG0514 274 QAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335 (590)
T ss_pred HHHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeec
Confidence 999986666 89999999999999999999999999999999999999999998888877654
No 86
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.4e-16 Score=208.06 Aligned_cols=408 Identities=15% Similarity=0.198 Sum_probs=229.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kw~Ps 1075 (2240)
..++.|+.| .++- ..|.|....||.|||++++..+..... ....++||+|+..|.. |...+.+|+ +
T Consensus 78 ~p~~vQl~~--~~~l----~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-G 147 (790)
T PRK09200 78 RPYDVQLIG--ALVL----HEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL-G 147 (790)
T ss_pred CCchHHHHh--HHHH----cCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-C
Confidence 344445555 4433 224489999999999988665542222 2347899999986643 666666665 5
Q ss_pred CeEEEEecchh-hHhHHHHHHHhhcCCcEEEEcHHHH-----HHhhh----hccccCcceEecccccccCCchhHHHHHh
Q 000099 1076 VSCIYYVGAKD-QRSRLFSQEVAALKFNVLVTTYEFI-----MYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1076 lkVvvy~Gskd-eRk~l~~qei~~~~fdVVITTYE~L-----~kD~s----~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
+.+.++.|... ...+ ......+|+++|...+ ..... .+....+.++||||+|.|. +
T Consensus 148 l~v~~i~g~~~~~~~r-----~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL---------i 213 (790)
T PRK09200 148 LTVGLNFSDIDDASEK-----KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL---------L 213 (790)
T ss_pred CeEEEEeCCCCcHHHH-----HHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce---------e
Confidence 77777776544 2211 1124579999997665 32211 1223478999999999985 2
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhh----hcccc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDW 1207 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-F~----------S~---~sF~e~F~kPf~~~g~~~~~e~d~ 1207 (2240)
.. +..-|++||.+-.. ..+|...+. |..+. |. +. ....+.|..+ . .+
T Consensus 214 De--a~tpliisg~~~~~--~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~-------~----l~ 278 (790)
T PRK09200 214 DE--AQTPLIISGKPRVQ--SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID-------N----LY 278 (790)
T ss_pred cc--CCCceeeeCCCccc--cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc-------c----cc
Confidence 22 22347788754322 235544432 22210 00 00 0011111110 0 00
Q ss_pred HHHHHHHHHHHHHHHHhhH-HHHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHHh-
Q 000099 1208 LETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR- 1278 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~~- 1278 (2240)
. ......++.+...|+. +++.+-+.=+. .+....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 279 ~--~~~~~~~~~i~~Al~A~~~~~~d~dYiV---~~~~v~ivD-~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a 352 (790)
T PRK09200 279 S--LEHQVLYRHIILALRAHVLFKRDVDYIV---YDGEIVLVD-RFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMA 352 (790)
T ss_pred C--hhhhHHHHHHHHHHHHHHHhhcCCcEEE---ECCEEEEEE-CCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehh
Confidence 0 0001112233333333 22222221111 111111111 111 2333444444433322222211000
Q ss_pred hhhcChhhHHHHHHH-------HHHHHHHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCe
Q 000099 1279 RVQKNPIYQAKVYKT-------LNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHR 1346 (2240)
Q Consensus 1279 ~l~~~~~~~ak~~~s-------L~nilmqLRKICNHP~L~~p~~~~-----ls~d~LirsSGKLelLdrIL~kL~atGhK 1346 (2240)
.+..... -+.|.. ....-..+.++-+.+.+..|.... ...........|+..|...+......+..
T Consensus 353 ~It~q~~--fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~p 430 (790)
T PRK09200 353 SITIQNL--FRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRP 430 (790)
T ss_pred hhhHHHH--HHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCC
Confidence 0000000 000111 111123555665555444443221 11112234456888888888877778999
Q ss_pred EEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCC---CCCC-----e
Q 000099 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL---QSAD-----T 1418 (2240)
Q Consensus 1347 VLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNL---QaAD-----t 1418 (2240)
|||||.....++.|...|...|+++..|+|.+...++..+...|.. +. ++|+|+.+|+|+|+ +.+. +
T Consensus 431 vLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 431 VLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEccchhcCcCCCcccccccccCcE
Confidence 9999999999999999999999999999999988887777666653 23 79999999999999 5777 9
Q ss_pred EEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1419 VIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
||+||.|-|+..|.|+.||++|.|....+..| ++.++.++.
T Consensus 506 VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--is~eD~l~~ 546 (790)
T PRK09200 506 VIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--ISLEDDLLK 546 (790)
T ss_pred EEeccCCCCHHHHHHhhccccCCCCCeeEEEE--EcchHHHHH
Confidence 99999999999999999999999988766443 455666554
No 87
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=3.5e-17 Score=213.69 Aligned_cols=372 Identities=14% Similarity=0.108 Sum_probs=206.3
Q ss_pred CCCcHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHK 1071 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~K 1071 (2240)
.-.|+||..+|+.++....+ ..+|||++.+|+|||++++.++..|+. .....++|||||. .|..||..+|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 35789999999999877643 457999999999999999998888774 3445689999995 488999999999
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh-hhhcccc----CcceEecccccccCCchhHHHHHhh
Q 000099 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD-RSKLSKV----DWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1072 w~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD-~s~L~ki----kWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
+.+... .-.++..... .........|+|||++.+... ...+... ...+||+|||||... ..+...+.
T Consensus 316 ~~~~~~--~~~~s~~~L~----~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~ 387 (667)
T TIGR00348 316 LQKDCA--ERIESIAELK----RLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNLK 387 (667)
T ss_pred hCCCCC--cccCCHHHHH----HHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHHH
Confidence 875311 1112222111 122334578999999999752 1112111 223899999999742 33445554
Q ss_pred -ccccceEEEeecCCCCCCHHHHHHHHhhhcccc---cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1147 -RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV---FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1147 -~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~i---F~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
.+....+|+|||||+...-.+-+..+....-.+ +.-.+...+-+..|+.......
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~--------------------- 446 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLP--------------------- 446 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecch---------------------
Confidence 567788999999998642111111111110000 0111112222222221110000
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHH-HHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ-SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Q-r~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
+. . ++... ...++.........+... ....+......+
T Consensus 447 ------------~~--~------------~~~~~l~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~ 485 (667)
T TIGR00348 447 ------------ED--H------------LDRKKLDAFFDEIFELLPERIREI---------------TKESLKEKLQKT 485 (667)
T ss_pred ------------hh--c------------cChHHHHHHHHHHHHhhhccccHH---------------HHHHHHHHHHHH
Confidence 00 0 00000 000110000000000000 000011111111
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHH-HHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-----CceEEeec
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLW-ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRID 1375 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLe-lLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-----Giky~rLD 1375 (2240)
..+..++.. +.. ... ++..........+.|.+|||..+..+..+.+.|... +...+.++
T Consensus 486 ~~~~~~~~~-------------~~~--ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s 550 (667)
T TIGR00348 486 KKILFNEDR-------------LES--IAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMT 550 (667)
T ss_pred HhhhcChHH-------------HHH--HHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEec
Confidence 111111100 000 000 011111111123579999999999998888777544 34566777
Q ss_pred CCCCHH---------------------HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHH
Q 000099 1376 GTTSLE---------------------DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434 (2240)
Q Consensus 1376 GsTs~e---------------------EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QA 1434 (2240)
|+...+ ....++++|.++ .++. |||.++...+|+|.+.++++++.-+--+ +.++|+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQa 627 (667)
T TIGR00348 551 GKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQA 627 (667)
T ss_pred CCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHH
Confidence 765433 224789999863 3444 5677799999999999999999888775 458999
Q ss_pred hhhhhcc-CC-cceEEEEEEehhHHHh
Q 000099 1435 VARAHRI-GQ-KREVKVIYMEAVVDKI 1459 (2240)
Q Consensus 1435 iGRAhRI-GQ-KKeV~VyrLvTVEEkI 1459 (2240)
+||+.|+ +- |....|+.++.+.+.+
T Consensus 628 i~R~nR~~~~~K~~g~IvDy~g~~~~l 654 (667)
T TIGR00348 628 IARTNRIDGKDKTFGLIVDYRGLEKSL 654 (667)
T ss_pred HHHhccccCCCCCCEEEEECcChHHHH
Confidence 9999995 43 4457888887654443
No 88
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.78 E-value=3.8e-17 Score=223.10 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=85.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC---------------------------------ceEEeecCCCCHHHHHHHHHH
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---------------------------------LVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rG---------------------------------iky~rLDGsTs~eEReeaIk~ 1389 (2240)
.+.++||||+.+..++.|...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998887531 124568899999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhcc
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRI 1441 (2240)
|+++..+ +||+|+++++|||+..+|+||+|++|.+...|+||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9976654 799999999999999999999999999999999999999985
No 89
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=8.9e-18 Score=202.02 Aligned_cols=315 Identities=22% Similarity=0.281 Sum_probs=211.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HH---HHhCCCCCe-EEEechH-HHHHHHHHHHHHCC
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LM---EFKGNYGPH-LIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Ll---e~kg~~GP~-LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
..|.|-.+|.-.++ +...|--.-+|+|||..++..+.. .+ +.+...||+ |||||+. +..|...|.++|+.
T Consensus 246 ptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 246 PTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred CCcccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 34455566655554 444454556999999887765433 33 234456776 5667976 66788899999964
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhcc
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~L 1148 (2240)
++++++.+|+.....++. +. .....+||+|++.|+... ....-.+..||||||+.+|..- .........++
T Consensus 322 ~ygl~~v~~ygGgsk~eQ~k--~L-k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi 398 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWEQSK--EL-KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI 398 (731)
T ss_pred hccceEEEeecCCcHHHHHH--hh-hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhc
Confidence 567777666654444332 22 367899999999998653 2333446789999999999653 33444444566
Q ss_pred ccce-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 RCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 ks~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
+.++ .|++++|= .. ++.++.
T Consensus 399 rpdrQtllFsaTf--------------------------~~------------------------------kIe~la--- 419 (731)
T KOG0339|consen 399 RPDRQTLLFSATF--------------------------KK------------------------------KIEKLA--- 419 (731)
T ss_pred CCcceEEEeeccc--------------------------hH------------------------------HHHHHH---
Confidence 6655 68888871 10 011111
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
.+++. +.+. +|....-.. +.-|.+.-.+|-
T Consensus 420 ------rd~L~---dpVr-vVqg~vgea---------------------------------------n~dITQ~V~V~~- 449 (731)
T KOG0339|consen 420 ------RDILS---DPVR-VVQGEVGEA---------------------------------------NEDITQTVSVCP- 449 (731)
T ss_pred ------HHHhc---CCee-EEEeehhcc---------------------------------------ccchhheeeecc-
Confidence 11111 1111 111110000 000111111111
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
....|+.+|.+-|.+... ..+||||..-....+.|...|+..+|.+..+||++.+.+|.+.|
T Consensus 450 -----------------s~~~Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 450 -----------------SEEKKLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred -----------------CcHHHHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 112477777777776543 34899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.+|+..... +|+.|+++.+||++....|||+||.--+-..+.|||||++|.|.+.. .|.|+|
T Consensus 512 s~fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGv--ayTlvT 573 (731)
T KOG0339|consen 512 SKFKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGV--AYTLVT 573 (731)
T ss_pred HHHhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccce--eeEEec
Confidence 999986666 79999999999999999999999999999999999999999998843 345544
No 90
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=5.4e-19 Score=185.05 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
+.+++.|.+||+.|.. +..+..|+.++...++||||++ |++||||.||.+||.++.|.++++|..||.|||.|
T Consensus 4 ~~w~~~c~~il~~l~~------~~~s~~F~~PVd~~~~pdY~~i-Ik~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 4 SDWKKQCKELVNLMWD------CEDSEPFRQPVDLLKYPDYRDI-IDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred HHHHHHHHHHHHHHHh------CCccccccCCCChhhcCcHHHH-hCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999974 4578999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCChhHHh
Q 000099 2017 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREA 2054 (2240)
Q Consensus 2017 a~~yn~~-~sev~~dA~~L~~~F~~~~k~~fP~~~f~~a 2054 (2240)
|+.||++ +|.||.+|..|+++|..+++...+ +|.+|
T Consensus 77 a~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~--~~~~~ 113 (119)
T cd05496 77 SKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS--DWKSA 113 (119)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 9999985 999999999999999999999866 55544
No 91
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.77 E-value=5.1e-19 Score=179.28 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
++|.+||++|.. +..+.+|+.++.+.++||||++ |++||||.+|+.||++++|.++++|..||+|||+||+.|
T Consensus 3 ~~c~~il~~l~~------~~~s~~F~~pv~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05505 3 QKCEEILSKILK------YRFSWPFREPVTADEAEDYKKV-ITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKY 75 (97)
T ss_pred HHHHHHHHHHHh------CCCcccccCCCChhhcccHHHH-cCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999974 3467899999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
|+++|.||.+|.+|+++|.+++
T Consensus 76 N~~~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 76 YENGSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 92
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=7.1e-19 Score=202.80 Aligned_cols=315 Identities=20% Similarity=0.232 Sum_probs=218.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH----HHHHHHHHHHHCCCC
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV----LVNWKSELHKWLPSV 1076 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL----L~QW~~Ef~Kw~Psl 1076 (2240)
.-|.|.+.+.-++. +.+.+.-.-.|+|||...+..++..+..+...-..+|+||+.. .+|-+.++.+++. +
T Consensus 108 PSPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG-I 182 (459)
T ss_pred CCCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC-e
Confidence 34567777766654 3333444678999998877776666655555557899999764 3567888888875 8
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCchh--HHHHHhhcc-ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRY-RCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~S--KlskaLk~L-ks~ 1151 (2240)
++.+..|+...|..+.. .....+++|.|++.+..... .-.-.+..++|+|||+.+....- .+.+.+.-+ +.+
T Consensus 183 ~vmvttGGT~lrDDI~R---l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r 259 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMR---LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER 259 (459)
T ss_pred EEEEecCCcccccceee---ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc
Confidence 88888888877765432 24567999999999976532 22223678999999999976433 344444445 345
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..|+.|||= . -..+.|.. |.
T Consensus 260 QillySATF-P------------------~tVk~Fm~-----------------------------------------~~ 279 (459)
T KOG0326|consen 260 QILLYSATF-P------------------LTVKGFMD-----------------------------------------RH 279 (459)
T ss_pred eeeEEeccc-c------------------hhHHHHHH-----------------------------------------Hh
Confidence 578888881 0 01223322 22
Q ss_pred hhhhhccCCCCceEEEEEeccCHH-HHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAI-QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~-Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
+++-.+ +.+.-+|+.. -..+|.
T Consensus 280 l~kPy~--------INLM~eLtl~GvtQyYa------------------------------------------------- 302 (459)
T KOG0326|consen 280 LKKPYE--------INLMEELTLKGVTQYYA------------------------------------------------- 302 (459)
T ss_pred ccCcce--------eehhhhhhhcchhhhee-------------------------------------------------
Confidence 221110 0000000000 000010
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
.+..+-|+.+|..++.+|.- ...||||+.+...++|+..+...||.+..+|..|.++.|..++.+|
T Consensus 303 ------------fV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 303 ------------FVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred ------------eechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 12335577778888777653 3689999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHh
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI 1459 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI 1459 (2240)
+.+... .|++|+..-+|||+|++++||+||.|-|+..|++|+||.+|.|.-.- -+.|++.+++.
T Consensus 369 r~G~cr---nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGl--AInLityedrf 432 (459)
T KOG0326|consen 369 RNGKCR---NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL--AINLITYEDRF 432 (459)
T ss_pred hccccc---eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcce--EEEEEehhhhh
Confidence 975544 68899999999999999999999999999999999999999996543 34566655554
No 93
>PRK09401 reverse gyrase; Reviewed
Probab=99.77 E-value=4.4e-17 Score=221.54 Aligned_cols=295 Identities=16% Similarity=0.203 Sum_probs=189.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps- 1075 (2240)
|.+++++|..++..++. +.+.++..+||+|||..++.++.++. .....+|||||+. |+.||...|.+++..
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 55899999998887775 77889999999999965444333332 2346799999987 678899999998753
Q ss_pred -CeEEEEecch----hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch------------
Q 000099 1076 -VSCIYYVGAK----DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE------------ 1138 (2240)
Q Consensus 1076 -lkVvvy~Gsk----deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~------------ 1138 (2240)
+.+.+..|.. ..+.... ..+....++|+|+|++.+.++...+...++++|||||||+|....
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~-~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFL-ERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHH-HHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 3443333322 2222222 123446799999999999988777777779999999999986311
Q ss_pred --hHHHHHhhccc-------------------------cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhc
Q 000099 1139 --SVLARDLDRYR-------------------------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS 1191 (2240)
Q Consensus 1139 --SKlskaLk~Lk-------------------------s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~ 1191 (2240)
..+..++..++ ....+++|||.-.......
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~----------------------- 286 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK----------------------- 286 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH-----------------------
Confidence 11111221111 1224445555321110000
Q ss_pred CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCccc
Q 000099 1192 QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271 (2240)
Q Consensus 1192 kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~l 1271 (2240)
+++ ++.. +.+
T Consensus 287 ------------------------------------l~~----~ll~---------~~v--------------------- 296 (1176)
T PRK09401 287 ------------------------------------LFR----ELLG---------FEV--------------------- 296 (1176)
T ss_pred ------------------------------------Hhh----ccce---------EEe---------------------
Confidence 000 0000 000
Q ss_pred CchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEe
Q 000099 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFS 1351 (2240)
Q Consensus 1272 d~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFS 1351 (2240)
... . ..++.+. |-+ +....|...|..++..+ +..+||||
T Consensus 297 ~~~--------~---------------~~~rnI~-~~y--------------i~~~~k~~~L~~ll~~l---~~~~LIFv 335 (1176)
T PRK09401 297 GSP--------V---------------FYLRNIV-DSY--------------IVDEDSVEKLVELVKRL---GDGGLIFV 335 (1176)
T ss_pred cCc--------c---------------cccCCce-EEE--------------EEcccHHHHHHHHHHhc---CCCEEEEE
Confidence 000 0 0000000 000 00013555666666543 46899999
Q ss_pred cchhH---HHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCC-CCeEEEcC
Q 000099 1352 TMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYD 1423 (2240)
Q Consensus 1352 Q~t~~---LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQa-ADtVIifD 1423 (2240)
+.... ++.|.++|...|+++..+||++ .+.+++|.+++.+ +||+ |+++++|||++. +.+|||||
T Consensus 336 ~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 336 PSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYG 407 (1176)
T ss_pred ecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeC
Confidence 98776 9999999999999999999999 2346999976554 4555 799999999999 89999999
Q ss_pred CCC------ChhhHHHHhhhhhccC
Q 000099 1424 PDP------NPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1424 ~pW------NP~~d~QAiGRAhRIG 1442 (2240)
.|- ....+.+++||+..+-
T Consensus 408 vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 408 VPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCCEEEeccccccCHHHHHHHHhhc
Confidence 998 7788999999998554
No 94
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=1.5e-18 Score=180.92 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=97.7
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
.+|...+. +|..||.+|... ..+..|+.++++.++||||++ |++||||.+|++||+.++|.++.+|..||.|
T Consensus 8 ~~~~~~~~-~c~~il~~l~~~------~~s~~F~~pvd~~~~pdY~~v-I~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~L 79 (115)
T cd05504 8 HHGPLNLS-ALEQLLVEIVKH------KDSWPFLRPVSKIEVPDYYDI-IKKPMDLGTIKEKLNMGEYKLAEEFLSDIQL 79 (115)
T ss_pred CCCHHHHH-HHHHHHHHHHhC------CCchhhcCCCCccccccHHHH-hcCcccHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 46667666 899999999743 468899999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||.||+.||+++|.+|.+|..|+++|.++++..
T Consensus 80 I~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 80 VFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 95
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1e-17 Score=197.41 Aligned_cols=311 Identities=19% Similarity=0.262 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-----HHHHHhC-CCCCeEEEechHHH-HHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-----YLMEFKG-NYGPHLIIVPNAVL-VNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa-----~Lle~kg-~~GP~LIVVP~SLL-~QW~~Ef~Kw 1072 (2240)
+..|.|-.+-.-++ .+...|-...||+|||+..+..-. ....... ....+||+.|+.-| .+-.-|..++
T Consensus 242 KPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 34455555533333 367778889999999988765211 1111112 22357888998754 5566677665
Q ss_pred -CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCC--chhHHHHHhhc
Q 000099 1073 -LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDR 1147 (2240)
Q Consensus 1073 -~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk~ 1147 (2240)
+.+++.++++|......++ +.....++++|+|+..|.+. ...+.-....|||||||++|.. ..-.+.+.|..
T Consensus 318 syng~ksvc~ygggnR~eqi---e~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQI---EDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hhcCcceEEEecCCCchhHH---HHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 4555555555544333232 33467889999999998754 2334444678999999999976 45678888888
Q ss_pred cccceEEEee-cCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 YRCQRRLLLT-GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 Lks~~RLLLT-GTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
++.++..+|| || ...
T Consensus 395 iRPDRqtvmTSAT-WP~--------------------------------------------------------------- 410 (629)
T KOG0336|consen 395 IRPDRQTVMTSAT-WPE--------------------------------------------------------------- 410 (629)
T ss_pred cCCcceeeeeccc-Cch---------------------------------------------------------------
Confidence 8887755554 44 100
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
-+||+.....+ ...++++- .+.+. .|+
T Consensus 411 -~VrrLa~sY~K-----ep~~v~vG----------------sLdL~-------------------------------a~~ 437 (629)
T KOG0336|consen 411 -GVRRLAQSYLK-----EPMIVYVG----------------SLDLV-------------------------------AVK 437 (629)
T ss_pred -HHHHHHHHhhh-----CceEEEec----------------cccee-------------------------------eee
Confidence 11111111111 00111110 00000 000
Q ss_pred CCCCCCCCccccchh-hHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d-~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERee 1385 (2240)
. .... ++...+.|++.+..++.. ...+.||||||....++|-|..-|...||....|||.-.+.+|+.
T Consensus 438 s----------VkQ~i~v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~ 506 (629)
T KOG0336|consen 438 S----------VKQNIIVTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREM 506 (629)
T ss_pred e----------eeeeEEecccHHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHH
Confidence 0 0000 011123355444444433 456789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+++.|+++.-. ||++|+.+++|||++++.+|++||.|-|-..|+||+||++|.|.+....
T Consensus 507 al~~~ksG~vr---ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si 566 (629)
T KOG0336|consen 507 ALEDFKSGEVR---ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI 566 (629)
T ss_pred HHHhhhcCceE---EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE
Confidence 99999986544 7999999999999999999999999999999999999999999887643
No 96
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.76 E-value=3e-18 Score=176.52 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
..+|+...+|+..|..+.|++||.+++.|+++|++. |+||.+ |++||||.+|..||++++|.++++|..||.|||.|
T Consensus 2 ~~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~~--~~~~~~-ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 2 LLVQELLATLFVSVMNHQDEEGRCYSDSLAELPELA--VDGVGP-KKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCchHHHHHCCCcc--cCchhh-hcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999965 777888 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
|+.||.++|++|+||..|+++|..+....+
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998776654
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.75 E-value=1.8e-16 Score=199.86 Aligned_cols=307 Identities=18% Similarity=0.283 Sum_probs=207.9
Q ss_pred CCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLP-- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~P-- 1074 (2240)
+|...|..++.-+..=... ..+-+|-.++|+|||++|+..+...++ ....+.+.+|+.+| .|....|.+|++
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 6778999999887753332 334588999999999998777766665 23467999999865 778999999997
Q ss_pred CCeEEEEecchh--hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-ccc-c
Q 000099 1075 SVSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR-C 1150 (2240)
Q Consensus 1075 slkVvvy~Gskd--eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lk-s 1150 (2240)
++.+....|.-. .|+.+. ..+..+..+|||.|+..|..... ..+..+|||||-||+.- .....|. .-. .
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l-~~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFGV---~QR~~L~~KG~~~ 411 (677)
T COG1200 339 GIRVALLTGSLKGKARKEIL-EQLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFGV---HQRLALREKGEQN 411 (677)
T ss_pred CCeEEEeecccchhHHHHHH-HHHhCCCCCEEEEcchhhhccee---ecceeEEEEeccccccH---HHHHHHHHhCCCC
Confidence 578888888643 333333 35677889999999998865433 34678999999999853 2222233 223 6
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
++.|.||||||..++.= ..|++.+
T Consensus 412 Ph~LvMTATPIPRTLAl----------t~fgDld---------------------------------------------- 435 (677)
T COG1200 412 PHVLVMTATPIPRTLAL----------TAFGDLD---------------------------------------------- 435 (677)
T ss_pred CcEEEEeCCCchHHHHH----------HHhcccc----------------------------------------------
Confidence 89999999999887541 1111100
Q ss_pred hhhhhhccCCCCceEEEEEeccC-HHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS-~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
-.+.++||+...-+...-+. ..-..+|+++
T Consensus 436 ---vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i---------------------------------------------- 466 (677)
T COG1200 436 ---VSIIDELPPGRKPITTVVIPHERRPEVYERI---------------------------------------------- 466 (677)
T ss_pred ---chhhccCCCCCCceEEEEeccccHHHHHHHH----------------------------------------------
Confidence 01234577763222221111 1112222222
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchh--------HHHHHHHHHHh--cCceEEeecCCCC
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQW--RQLVYRRIDGTTS 1379 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~--------~LDiLed~L~~--rGiky~rLDGsTs 1379 (2240)
..++ ..|+.+.+.|.-.+ .+..+.+.|.. -++++..+||.|+
T Consensus 467 ---------------------------~~ei-~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~ 518 (677)
T COG1200 467 ---------------------------REEI-AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMK 518 (677)
T ss_pred ---------------------------HHHH-HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCC
Confidence 1111 13444444443221 12233333432 2567889999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1380 ~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.+++.+++.+|++++.+ ||+||.+..+|||+++|+.+||+|.. +--++..|-.||++|-+...-|..++-
T Consensus 519 ~~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~ 589 (677)
T COG1200 519 PAEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYK 589 (677)
T ss_pred hHHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeC
Confidence 99999999999987777 89999999999999999999999998 689999999999999776666655443
No 98
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.75 E-value=1.5e-16 Score=206.79 Aligned_cols=318 Identities=21% Similarity=0.181 Sum_probs=216.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CC---CCeEEEechHHHHH-HHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NY---GPHLIIVPNAVLVN-WKSELHKW 1072 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~---GP~LIVVP~SLL~Q-W~~Ef~Kw 1072 (2240)
.+|+|.|..++..+.. +.|.++..+||+|||..|+..+...+-..+ .. -.+|.|.|..-|.+ -...+..|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 3799999999987775 999999999999999999887665544342 11 24799999876554 55556666
Q ss_pred C--CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh------hhhccccCcceEecccccccCC--chhHHH
Q 000099 1073 L--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD--RESVLA 1142 (2240)
Q Consensus 1073 ~--PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrLKN--~~SKls 1142 (2240)
. -++.+-+-+|......+ +......+||+|||++++.-. +..|. +..+|||||.|.+.+ ..+.++
T Consensus 97 ~~~~G~~v~vRhGDT~~~er---~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK---QKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHcCCccceecCCCChHHh---hhccCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhhh
Confidence 4 35667777775433222 134567889999999998543 23343 467899999999975 345666
Q ss_pred HHhhcc---c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000099 1143 RDLDRY---R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (2240)
Q Consensus 1143 kaLk~L---k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~ 1218 (2240)
-.|.++ . .-.|++||||= .++.++ -.||.+.-. +.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~------------~~------------------------ 210 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD------------PC------------------------ 210 (814)
T ss_pred hhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC------------ce------------------------
Confidence 655554 2 35699999993 233333 233322100 00
Q ss_pred HHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000099 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298 (2240)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nil 1298 (2240)
.-|......+.++.+.++-......
T Consensus 211 ---------------~Iv~~~~~k~~~i~v~~p~~~~~~~---------------------------------------- 235 (814)
T COG1201 211 ---------------EIVDVSAAKKLEIKVISPVEDLIYD---------------------------------------- 235 (814)
T ss_pred ---------------EEEEcccCCcceEEEEecCCccccc----------------------------------------
Confidence 0000011111111111110000000
Q ss_pred HHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcC-ceEEeecCC
Q 000099 1299 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRIDGT 1377 (2240)
Q Consensus 1299 mqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rG-iky~rLDGs 1377 (2240)
..-...+...+.++..+...+|||++.+.+.+.+...|+..+ ..+..-||+
T Consensus 236 ----------------------------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgS 287 (814)
T COG1201 236 ----------------------------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGS 287 (814)
T ss_pred ----------------------------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccc
Confidence 000112333444555566789999999999999999999887 888899999
Q ss_pred CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhh-hccCCcceEEEEEE
Q 000099 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVIYM 1452 (2240)
Q Consensus 1378 Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRA-hRIGQKKeV~VyrL 1452 (2240)
.+.+.|..+-++|+.++-+ .++||....+|||+-.+|.||.|.+|-.-...+||+||+ ||+|....-.||-.
T Consensus 288 lSre~R~~vE~~lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 288 LSRELRLEVEERLKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred ccHHHHHHHHHHHhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 9999999999999987655 689999999999999999999999999999999999999 67787655544433
No 99
>smart00297 BROMO bromo domain.
Probab=99.75 E-value=2.5e-18 Score=175.25 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
+++|+.++..|...++. |.++.+|+.+|++.++|+||++ |.+||||.+|++||++++|.++++|..||.|||.||+.
T Consensus 5 ~~~~~~~~~~i~~~~~~--~~~~~~F~~~~~~~~~p~Y~~~-i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 5 QKKLQSLLKAVLDKLDS--HRLSWPFLKPVDRKEAPDYYDI-IKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred HHHHHHHHHHHHHHHHh--CccchhhccCCChhhccCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44455555554444433 6899999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
||+++|.+|.+|..|+++|.++|+.
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999986
No 100
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=7.3e-17 Score=207.94 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=122.5
Q ss_pred HHHHHHHcCCCCCCCCCccccc----hhhH-hhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEE
Q 000099 1298 CMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (2240)
Q Consensus 1298 lmqLRKICNHP~L~~p~~~~ls----~d~L-irsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~ 1372 (2240)
...|.++-+.+.+..|...... .+.+ .....|+..+...+.++...|..|||||......+.|...|...|+++.
T Consensus 354 ~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~ 433 (745)
T TIGR00963 354 EEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHN 433 (745)
T ss_pred HHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 3566777666655444332211 1111 2234578778777777788999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC-------CCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS-------ADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1373 rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa-------ADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
.|+|. ..+|+..|..|...... ++|+|+.+|+|+|+.. ..+||+++.|-|...|.|+.||++|.|...
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~g~---VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRKGA---VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPG 508 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCCce---EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCc
Confidence 99998 77999999999864444 8999999999999998 569999999999999999999999999887
Q ss_pred eEEEEEEehhHHHhh
Q 000099 1446 EVKVIYMEAVVDKIS 1460 (2240)
Q Consensus 1446 eV~VyrLvTVEEkI~ 1460 (2240)
.+..| ++.++.++
T Consensus 509 ~s~~~--ls~eD~l~ 521 (745)
T TIGR00963 509 SSRFF--LSLEDNLM 521 (745)
T ss_pred ceEEE--EeccHHHH
Confidence 76544 33444444
No 101
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.75 E-value=7.6e-18 Score=206.30 Aligned_cols=313 Identities=19% Similarity=0.262 Sum_probs=215.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCC---CC
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLP---SV 1076 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~P---sl 1076 (2240)
..+.|..+|..... +..-|+-.-.|+|||++...++..-+......--.|||+|+..+ .|...-|.+.++ ++
T Consensus 48 ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 44678888877665 67779999999999988655544444334444567999999854 566777777776 57
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCchh---HHHHHhhccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYR-C 1150 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~Lk-s 1150 (2240)
+|.+|.|+.+.... ..+....+|+|.|++.|... ...|.--+.+++|+|||+.+....+ .+...+..+. .
T Consensus 124 ~csvfIGGT~~~~d----~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~ 199 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLD----LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQI 199 (980)
T ss_pred ceEEEecCchhhhh----hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchh
Confidence 89999887665432 23445678999999999754 3456666889999999999976443 4555566664 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh-HHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFML 1229 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr-PFmL 1229 (2240)
+..+++|||=- .+|.+ +|.++++ |.++
T Consensus 200 rQv~a~SATYp-~nLdn---------------------------------------------------~Lsk~mrdp~lV 227 (980)
T KOG4284|consen 200 RQVAAFSATYP-RNLDN---------------------------------------------------LLSKFMRDPALV 227 (980)
T ss_pred heeeEEeccCc-hhHHH---------------------------------------------------HHHHHhccccee
Confidence 55888999931 12222 2222332 2222
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
|-...|+- -+.-+..++..|.... ....
T Consensus 228 r~n~~d~~-L~GikQyv~~~~s~nn------------------------------------------svee--------- 255 (980)
T KOG4284|consen 228 RFNADDVQ-LFGIKQYVVAKCSPNN------------------------------------------SVEE--------- 255 (980)
T ss_pred ecccCCce-eechhheeeeccCCcc------------------------------------------hHHH---------
Confidence 22122210 0111111111111000 0000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
.--|+..|..++..+- -...||||....-++-|..+|...|+.+..|.|.|++.+|..+++.
T Consensus 256 ----------------mrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 256 ----------------MRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred ----------------HHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHH
Confidence 0114455555554432 2357999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcce
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKe 1446 (2240)
++.-.. -||+||+..++|||-..++.||++|+|-+-..|.||||||+|.|-..-
T Consensus 318 lr~f~~---rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 318 LRAFRV---RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred hhhceE---EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 986332 379999999999999999999999999999999999999999996654
No 102
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.75 E-value=2e-18 Score=176.20 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++|..||++|.. ...+.++.+|+++++.. ++||||++ |++||||.+|+.||++++|.++.+|..||+|||.||+
T Consensus 3 ~~c~~Il~~l~~---~~~~~~s~~F~~pvd~~~~~~pdY~~~-I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 3 KFCEEVLKELMK---PKHSAYNWPFLDPVDPVALNIPNYFSI-IKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred HHHHHHHHHHHc---ccCCcccchhcCCCCccccCCCCHHHH-hcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 489999999954 45688999999996655 99999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
.||+++|.+|.+|..|+++|.++|
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999865
No 103
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=4.7e-18 Score=173.26 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
++|..|+.+|+.. ..+.+|...| ..+||||++ |++||||.||+.||+++.|.++++|+.||.|||+||+.|
T Consensus 5 ~~ce~il~~l~~~------~~s~~f~~~p--~~~pdY~~i-Ik~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~y 75 (102)
T cd05501 5 LKCEFLLLKVYCM------SKSGFFISKP--YYIRDYCQG-IKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLF 75 (102)
T ss_pred HHHHHHHHHHHhC------cccccccCCC--CCCCchHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4799999999844 3456776655 489999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
|+++ .++..|..|++.|..+++.+|
T Consensus 76 N~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 76 YKDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999999999987
No 104
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=3.7e-18 Score=174.11 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
+++|+.||++|.. .+|+.++.+|+++ |.+.++||||++ |.+||||.+|+.||+.++|.++.+|..||+|||.||
T Consensus 2 ~~~c~~il~~l~~---~~~~~~a~~F~~pv~~~~~~~p~Y~~~-I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na 77 (102)
T cd05498 2 LKFCSGILKELFS---KKHKAYAWPFYKPVDPEALGLHDYHDI-IKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNC 77 (102)
T ss_pred hhHHHHHHHHHHh---CCCccccCcccCcCCccccCCCcHHHH-ccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999964 4789999999997 455689999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
+.||+++|.++.+|..|+++|..+|
T Consensus 78 ~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 78 YKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 105
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=5.9e-18 Score=174.70 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
++.+.++|..++.+|... +..+..|..+ |.+.++||||++ |++||||.+|..||++++|.++.+|..||.||
T Consensus 1 ~~~l~~~~~~il~~l~~~-----~~~s~~F~~PV~~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li 74 (108)
T cd05495 1 PEELRQALMPTLEKLYKQ-----DPESLPFRQPVDPKLLGIPDYFDI-VKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLM 74 (108)
T ss_pred CHHHHHHHHHHHHHHHHc-----CcccchhcCCCCccccCCCcHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467889999999999733 2578899997 555689999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
|+||+.||+++|.||++|..|+++|...|+..
T Consensus 75 ~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 75 FDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 106
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.74 E-value=6.2e-17 Score=196.70 Aligned_cols=334 Identities=19% Similarity=0.236 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHH----------hCCCC--CeEEEechH-HHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEF----------KGNYG--PHLIIVPNA-VLVNW 1065 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~----------kg~~G--P~LIVVP~S-LL~QW 1065 (2240)
+..+.|...|.-++. .....|=|.|||+|||+.+.-.|.. +.+. ...+. -.|||+|+. |..|.
T Consensus 203 ~Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 344566666655553 2255677899999999987655544 2211 11112 269999988 55666
Q ss_pred HHHHHHHC--CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhcccc-CcceEecccccccC--C
Q 000099 1066 KSELHKWL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKV-DWKYIIIDEAQRMK--D 1136 (2240)
Q Consensus 1066 ~~Ef~Kw~--PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~ki-kWd~VIIDEAHrLK--N 1136 (2240)
+.-|...+ +.+++..+.|+-...++. .+.....+|||.|++.|+... -+|.++ +..++||||++||. .
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqKQq---RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekg 356 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQKQQ---RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKG 356 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHHHH---HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhc
Confidence 66666654 578888899887654432 334458899999999987532 123333 56899999999994 3
Q ss_pred chhHHHHHhhccc------cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000099 1137 RESVLARDLDRYR------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (2240)
Q Consensus 1137 ~~SKlskaLk~Lk------s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~ 1210 (2240)
+-..+++.|..+. -...|++|||- .|..- .|.......... +
T Consensus 357 hF~Els~lL~~L~e~~~~~qrQTlVFSATl------------t~~~~--------------~~~~~~~k~~~k------~ 404 (731)
T KOG0347|consen 357 HFEELSKLLKHLNEEQKNRQRQTLVFSATL------------TLVLQ--------------QPLSSSRKKKDK------E 404 (731)
T ss_pred cHHHHHHHHHHhhhhhcccccceEEEEEEe------------ehhhc--------------ChhHHhhhccch------h
Confidence 4445555555553 12358888882 11100 010000000000 0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHH
Q 000099 1211 EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 1290 (2240)
Q Consensus 1211 Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~ 1290 (2240)
......+..|.+.+ .-.-+++ + +++++.+..
T Consensus 405 ~~~~~kiq~Lmk~i------------g~~~kpk---i--iD~t~q~~t-------------------------------- 435 (731)
T KOG0347|consen 405 DELNAKIQHLMKKI------------GFRGKPK---I--IDLTPQSAT-------------------------------- 435 (731)
T ss_pred hhhhHHHHHHHHHh------------CccCCCe---e--EecCcchhH--------------------------------
Confidence 00001112221111 1111111 1 122221111
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCce
Q 000099 1291 YKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370 (2240)
Q Consensus 1291 ~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGik 1370 (2240)
...+..-+-.| |.+.-..+-. -++ ..-..|.||||+..+.+..|.-+|...++.
T Consensus 436 ----a~~l~Es~I~C--~~~eKD~yly---Yfl-----------------~ryPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 436 ----ASTLTESLIEC--PPLEKDLYLY---YFL-----------------TRYPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred ----HHHHHHHhhcC--CccccceeEE---EEE-----------------eecCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 11122222234 2221111000 011 112458999999999999999999999999
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1371 y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
.+.||..|.+++|.+.+++|.... ..+||+|+++++|||++.+++||+|-.|-+...|+||-||+.|.+.. -|.|.
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvm 565 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVM 565 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEE
Confidence 999999999999999999998633 34899999999999999999999999999999999999999999854 34444
No 107
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=7.1e-18 Score=175.10 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
++.+...|.+|++.|.... ..+.+|+.++.+.++||||++ |++||||.+|..||++++|.++++|..||.|||.
T Consensus 5 ~~~~~~~~~~il~~l~~~~-----~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~ 78 (112)
T cd05510 5 QEEFYESLDKVLNELKTYT-----EHSTPFLTKVSKREAPDYYDI-IKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWK 78 (112)
T ss_pred HHHHHHHHHHHHHHHHhcC-----ccccchhcCCChhhcCCHHHH-hcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 4678889999999997553 458999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCc-HHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2016 GAMQFYGFSH-EVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2016 Na~~yn~~~s-ev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
||+.||+++| .++.+|..|+++|.+.|+.. ||
T Consensus 79 N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~-~~ 111 (112)
T cd05510 79 NCLLYNSDPSHPLRRHANFMKKKAEHLLKLI-PD 111 (112)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 9999999765 67899999999999988754 65
No 108
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=5.1e-18 Score=171.96 Aligned_cols=95 Identities=15% Similarity=0.269 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
.+|..|+..|.. |..+..|+.+++..++|+||.+ |++||||.+|++||++++|.++.+|..||.|||.||+.|
T Consensus 3 ~~c~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05503 3 ALCETILDEMEA------HEDAWPFLEPVNTKLVPGYRKI-IKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETF 75 (97)
T ss_pred HHHHHHHHHHHc------CCCchhhcCCCCccccCCHHHH-hCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 379999999973 5788999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
|+++|.+|.+|..|+++|..+|
T Consensus 76 N~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 76 NEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
No 109
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.73 E-value=6.5e-16 Score=200.52 Aligned_cols=324 Identities=16% Similarity=0.201 Sum_probs=193.8
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH---------HHH---HhCCCCCeEEEech
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY---------LME---FKGNYGPHLIIVPN 1059 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~---------Lle---~kg~~GP~LIVVP~ 1059 (2240)
-|..|....|++.|.+.=+.++..+..+...|+..+||+|||.++=-++.+ .++ .....+++||++|.
T Consensus 152 n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Pr 231 (675)
T PHA02653 152 NPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPR 231 (675)
T ss_pred CCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcH
Confidence 344455567888888877777777777999999999999999875322221 111 02234689999998
Q ss_pred H-HHHHHHHHHHHHC-----CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccc
Q 000099 1060 A-VLVNWKSELHKWL-----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQR 1133 (2240)
Q Consensus 1060 S-LL~QW~~Ef~Kw~-----PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHr 1133 (2240)
. ++.+...++.+.. .+..+.+..|+.... .. .......+++|+|..... . .-.++++|||||||.
T Consensus 232 reLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~--~t~~k~~~Ilv~T~~L~l---~--~L~~v~~VVIDEaHE 302 (675)
T PHA02653 232 VALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LI--NTNPKPYGLVFSTHKLTL---N--KLFDYGTVIIDEVHE 302 (675)
T ss_pred HHHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hh--hcccCCCCEEEEeCcccc---c--ccccCCEEEcccccc
Confidence 7 4566677776532 345555666655421 10 111225689999854211 1 123688999999999
Q ss_pred cCCchhHHHHHhhccc--cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000099 1134 MKDRESVLARDLDRYR--CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1211 (2240)
Q Consensus 1134 LKN~~SKlskaLk~Lk--s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~E 1211 (2240)
+......+...++.+. ....+++|||.- .+... |..+|..|..-.
T Consensus 303 r~~~~DllL~llk~~~~~~rq~ILmSATl~-~dv~~------------------l~~~~~~p~~I~-------------- 349 (675)
T PHA02653 303 HDQIGDIIIAVARKHIDKIRSLFLMTATLE-DDRDR------------------IKEFFPNPAFVH-------------- 349 (675)
T ss_pred CccchhHHHHHHHHhhhhcCEEEEEccCCc-HhHHH------------------HHHHhcCCcEEE--------------
Confidence 8655444444443332 236899999962 11222 222221111000
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhcc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHH
Q 000099 1212 KKVIIIHRLHQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 1290 (2240)
Q Consensus 1212 e~~lii~RLhklLrPFmLRRlKkDVek-dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~ 1290 (2240)
+.. .+.+.....+.....+.+...|- .
T Consensus 350 ------------------------I~grt~~pV~~~yi~~~~~~~~~~~y~--~-------------------------- 377 (675)
T PHA02653 350 ------------------------IPGGTLFPISEVYVKNKYNPKNKRAYI--E-------------------------- 377 (675)
T ss_pred ------------------------eCCCcCCCeEEEEeecCcccccchhhh--H--------------------------
Confidence 000 01111111111110000000000 0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH-hcCCeEEEEecchhHHHHHHHHHHhc--
Q 000099 1291 YKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWR-- 1367 (2240)
Q Consensus 1291 ~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~-atGhKVLIFSQ~t~~LDiLed~L~~r-- 1367 (2240)
..|..++ .++..+. ..+..+|||+.....++.+.+.|...
T Consensus 378 ------------------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~ 420 (675)
T PHA02653 378 ------------------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP 420 (675)
T ss_pred ------------------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC
Confidence 0011111 1111111 23568999999999999999999887
Q ss_pred CceEEeecCCCCHHHHHHHHHHHh-cCCCCccEEEEecccccccCCCCCCCeEEEcC---CC---------CChhhHHHH
Q 000099 1368 QLVYRRIDGTTSLEDRESAIVDFN-SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD---PD---------PNPKNEEQA 1434 (2240)
Q Consensus 1368 Giky~rLDGsTs~eEReeaIk~FN-s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD---~p---------WNP~~d~QA 1434 (2240)
++.+..|||+++.. ++.+++|. ++. +-+|++|+++++|||++++++||.++ .+ .+...+.||
T Consensus 421 ~~~v~~LHG~Lsq~--eq~l~~ff~~gk---~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QR 495 (675)
T PHA02653 421 IYDFYIIHGKVPNI--DEILEKVYSSKN---PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQR 495 (675)
T ss_pred CceEEeccCCcCHH--HHHHHHHhccCc---eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHh
Confidence 79999999999964 56778874 332 34799999999999999999999997 22 277789999
Q ss_pred hhhhhccCCcceEEEEEEeh
Q 000099 1435 VARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1435 iGRAhRIGQKKeV~VyrLvT 1454 (2240)
.||++|. + +-.+|+|.+
T Consensus 496 aGRAGR~-~--~G~c~rLyt 512 (675)
T PHA02653 496 KGRVGRV-S--PGTYVYFYD 512 (675)
T ss_pred ccCcCCC-C--CCeEEEEEC
Confidence 9999998 3 344555554
No 110
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.73 E-value=8.6e-18 Score=173.21 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcc--cccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
..++--++.||.+|. .|..+.+|..+.. +.++||||++ |++||||.+|+.||+.++|.++.+|..||.|||
T Consensus 4 ~q~~~~~~~il~~l~------~~~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~ 76 (107)
T cd05497 4 NQLQYLLKVVLKALW------KHKFAWPFQQPVDAVKLNLPDYHKI-IKTPMDLGTIKKRLENNYYWSASECIQDFNTMF 76 (107)
T ss_pred HHHHHHHHHHHHHHH------hCCcCccccCCCCcccccCCcHHHH-HcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345555678888886 4688999999955 5589999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+.||+++|.||..|..|+++|.++|+.
T Consensus 77 ~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 77 TNCYIYNKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999975
No 111
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.73 E-value=3.7e-17 Score=211.69 Aligned_cols=112 Identities=15% Similarity=0.296 Sum_probs=102.2
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHH
Q 000099 1932 SAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSD 2009 (2240)
Q Consensus 1932 ~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D 2009 (2240)
+.++...+-+.|..||.+|+.++.. |+|... |....+||||.| |++||||+||..||..++|.++.||++|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~a------wpF~~PVD~v~LgLpDY~~I-IK~PMDLgTIK~kL~~~~Y~~~~eF~~D 288 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHA------WPFNEPVDVVKLGLPDYHDI-IKHPMDLGTIKKKLEKGEYKSAEEFAAD 288 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCC------CCcCCCcCHHhcCCcchhhh-cCCCccHHHHHhhhcccccCCHHHHHHH
Confidence 4455555666899999999977655 999999 888999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCh
Q 000099 2010 VQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTD 2050 (2240)
Q Consensus 2010 vqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~~ 2050 (2240)
|+|||+|||+||.++++||.-|..|.++|..+|+..++...
T Consensus 289 VRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 289 VRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999888443
No 112
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.72 E-value=1.3e-17 Score=169.87 Aligned_cols=99 Identities=19% Similarity=0.313 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++++|.+|+++|. .|..+..|+.++.+.++|+||++ |++||||.+|+.||++++|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~il~~l~------~~~~a~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 74 (101)
T cd05509 2 LYTQLKKVLDSLK------NHKSAWPFLEPVDKEEAPDYYDV-IKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCR 74 (101)
T ss_pred hHHHHHHHHHHHH------hCCCchhhcCCCChhhcCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999996 34578999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+++|.+|.+|..|+++|.++|+.
T Consensus 75 ~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 75 LYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
No 113
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.72 E-value=1.5e-17 Score=170.70 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1938 ~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
.+.+.|..++++|. .|..+.+|..++....+||||++ |++||||.+|++||++++|.++.||..||.|||.||
T Consensus 3 ~~~~~~~~il~~l~------~~~~a~~F~~pV~~~~~p~Y~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 75 (104)
T cd05507 3 AWKKAILLVYRTLA------SHRYASVFLKPVTEDIAPGYHSV-VYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred HHHHHHHHHHHHHH------cCCCCHhhcCCCCccccCCHHHH-hCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 46788999999996 47789999999998999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
+.||+++|.||.+|..|++.|.++|..
T Consensus 76 ~~yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 76 IMYNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998753
No 114
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.71 E-value=1.7e-15 Score=185.17 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=72.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC--ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ--LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rG--iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVI 1420 (2240)
.+.++||||+....++.|...|+..+ +.+..++|.++..+|.+.. .. .||++|+++++|||+.. ++||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999999865 5788999999999987653 22 38999999999999986 4666
Q ss_pred EcCCCCChhhHHHHhhhhh
Q 000099 1421 IYDPDPNPKNEEQAVARAH 1439 (2240)
Q Consensus 1421 ifD~pWNP~~d~QAiGRAh 1439 (2240)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678999999999985
No 115
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=2.5e-16 Score=185.48 Aligned_cols=305 Identities=20% Similarity=0.214 Sum_probs=192.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH----HHHHHHHCCCCe
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW----KSELHKWLPSVS 1077 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW----~~Ef~Kw~Pslk 1077 (2240)
-..|..+|..|+.. -..|-|--...|+|||..+...++......-...-++-|+|+.-+... ..|+.+|+ .++
T Consensus 114 skIQe~aLPlll~~--Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~it 190 (477)
T KOG0332|consen 114 SKIQETALPLLLAE--PPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELT 190 (477)
T ss_pred chHHHhhcchhhcC--CchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eee
Confidence 34566676666542 233446667899999977655544433322233445677998855443 34445555 343
Q ss_pred E-EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccc---cCcceEecccccccCCch--h-HHHHHhhccc-
Q 000099 1078 C-IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRMKDRE--S-VLARDLDRYR- 1149 (2240)
Q Consensus 1078 V-vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~k---ikWd~VIIDEAHrLKN~~--S-KlskaLk~Lk- 1149 (2240)
. +++.|++..|.. ...-+|+|.|++++.+....|.- .+...+|+|||+.|.+.. . .-.+....+.
T Consensus 191 a~yair~sk~~rG~-------~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~ 263 (477)
T KOG0332|consen 191 ASYAIRGSKAKRGN-------KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR 263 (477)
T ss_pred EEEEecCcccccCC-------cchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC
Confidence 3 334455333322 23458999999999876544333 367899999999997754 1 1222223333
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
....|+.|+|= -.....|...+
T Consensus 264 ~~QllLFSATf-------------------~e~V~~Fa~ki--------------------------------------- 285 (477)
T KOG0332|consen 264 NQQLLLFSATF-------------------VEKVAAFALKI--------------------------------------- 285 (477)
T ss_pred cceEEeeechh-------------------HHHHHHHHHHh---------------------------------------
Confidence 45678888881 00011121111
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
+|+.....++-+ .+. ...+.+|--.|.+
T Consensus 286 ----------vpn~n~i~Lk~e----------------el~------------------------L~~IkQlyv~C~~-- 313 (477)
T KOG0332|consen 286 ----------VPNANVIILKRE----------------ELA------------------------LDNIKQLYVLCAC-- 313 (477)
T ss_pred ----------cCCCceeeeehh----------------hcc------------------------ccchhhheeeccc--
Confidence 111111111100 000 0001122222221
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
...|+.+|..|.- +.. =...||||....++..|...|...|+.+..|||.+..++|..++++
T Consensus 314 ----------------~~~K~~~l~~lyg-~~t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~ 375 (477)
T KOG0332|consen 314 ----------------RDDKYQALVNLYG-LLT-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDR 375 (477)
T ss_pred ----------------hhhHHHHHHHHHh-hhh-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHH
Confidence 1235555555322 221 2357999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC------ChhhHHHHhhhhhccCCcceE
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW------NP~~d~QAiGRAhRIGQKKeV 1447 (2240)
|+.+..+ +|++|.+.++|||++.++.||+||+|- ++..|+||+||++|.|.+.-+
T Consensus 376 Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a 436 (477)
T KOG0332|consen 376 FREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA 436 (477)
T ss_pred HhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE
Confidence 9987776 899999999999999999999999984 688999999999999966544
No 116
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=5.4e-17 Score=166.14 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=93.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
|++.+.++|.+++.+|. -+..+.+|..+ |.+..+||||++ |.+||||.+|+.||+.+.|.++.+|..||+|
T Consensus 1 ~t~~~~~~~~~ii~~l~------~~~~a~~F~~pv~~~~~~~p~Y~~~-I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05500 1 MTKHQHKFLLSSIRSLK------RLKDARPFLVPVDPVKLNIPHYPTI-IKKPMDLGTIERKLKSNVYTSVEEFTADFNL 73 (103)
T ss_pred CCHHHHHHHHHHHHHHH------cCCCChhhcCCCCcccccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 57888899999999997 45678999998 446789999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
||.||+.||+++|.++.+|..|++.|..+|
T Consensus 74 i~~Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 74 MVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998764
No 117
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=6.3e-17 Score=171.72 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=96.8
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc-cCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI-ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~-~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
+.+.++.+|-.++.+| ++..++.++..|..++.+. .+|+||++ |++||||.+|++||+++.|.+..+|..||+||
T Consensus 21 ~~~~~~~~i~~~l~~l---~~~~~~~~~~~F~~pv~~~~~~p~Y~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 96 (128)
T cd05529 21 IRDEERERLISGLDKL---LLSLQLEIAEYFEYPVDLRAWYPDYWNR-VPVPMDLETIRSRLENRYYRSLEALRHDVRLI 96 (128)
T ss_pred CCHHHHHHHHHHHHHH---HhcccCcccccccCCCCccccCCcHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4466777777777666 4557999999999999999 99999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHH
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLK 2043 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k 2043 (2240)
|.||+.||+++|.++..|+.|+++|..+++
T Consensus 97 ~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 97 LSNAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999886
No 118
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.69 E-value=3.1e-15 Score=203.96 Aligned_cols=313 Identities=15% Similarity=0.223 Sum_probs=181.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps- 1075 (2240)
+..++++|..++..++. +.+.++..+||+|||..++.++.++.. ....+|||+|+. |+.|+..+|.+++..
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 34789999999987775 778899999999999855544444432 235799999987 668899999988753
Q ss_pred -Ce---EEEEecchhhHh--HHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc
Q 000099 1076 -VS---CIYYVGAKDQRS--RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR 1149 (2240)
Q Consensus 1076 -lk---Vvvy~GskdeRk--~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk 1149 (2240)
+. +.+|+|...... ..+ ..+..+.++|||+|++.+.+....+.. ++++|||||||+|....-.+-+.|..
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~-~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~l-- 224 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFM-ERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKL-- 224 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHH--
Confidence 22 234666543322 211 123345699999999999887666654 89999999999996522111111110
Q ss_pred cceEEEeecCCCCC-CHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1150 CQRRLLLTGTPLQN-DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1150 s~~RLLLTGTPLQN-nL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
.|- .. .+..+|.++.. +.. ...+ ..+..+..+++.
T Consensus 225 -------lGF--~~e~i~~il~~~~~---~~~-----------------------~~~~-------~~~~~~~~~~~~-- 260 (1171)
T TIGR01054 225 -------LGF--SEELIEKAWKLIRL---RLK-----------------------LYRA-------LHAKKRLELLEA-- 260 (1171)
T ss_pred -------cCC--CHHHHHHHHHHhhh---ccc-----------------------cchH-------HHHHHHHHHHHh--
Confidence 110 00 11122222211 000 0000 011222222211
Q ss_pred HHhhhhhhccCCCCceE-EEEEeccCH--HH--HHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000099 1229 LRRRVEDVEGSLPPKVS-IVLRCRMSA--IQ--SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (2240)
Q Consensus 1229 LRRlKkDVekdLP~KvE-~vV~c~LS~--~Q--r~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRK 1303 (2240)
+|.+.. ..+.+..|. .. ..++..+. .+... .. ...++.
T Consensus 261 -----------~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----~~~v~-------~~--------------~~~~r~ 303 (1171)
T TIGR01054 261 -----------IPGKKRGCLIVSSATGRPRGKRAKLFRELL-----GFEVG-------GG--------------SDTLRN 303 (1171)
T ss_pred -----------hhhccCcEEEEEeCCCCccccHHHHccccc-----ceEec-------Cc--------------cccccc
Confidence 111111 122222221 00 01111000 00000 00 000111
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecch---hHHHHHHHHHHhcCceEEeecCCCCH
Q 000099 1304 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT---KLLDILEEYLQWRQLVYRRIDGTTSL 1380 (2240)
Q Consensus 1304 ICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t---~~LDiLed~L~~rGiky~rLDGsTs~ 1380 (2240)
+. |.+ +....+...|..+|..+ +..+||||+.. ..++.|..+|...|+++..+||.++
T Consensus 304 I~-~~~--------------~~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~- 364 (1171)
T TIGR01054 304 VV-DVY--------------VEDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP- 364 (1171)
T ss_pred eE-EEE--------------EecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC-
Confidence 10 000 01111234555666543 56899999998 9999999999999999999999986
Q ss_pred HHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCC-CCeEEEcCCCCC
Q 000099 1381 EDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDPN 1427 (2240)
Q Consensus 1381 eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQa-ADtVIifD~pWN 1427 (2240)
+..+++|.+++.+ +||+ |+++++||||+. +++|||||.|--
T Consensus 365 ---~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 365 ---KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ---HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 3689999976554 4555 699999999999 799999999943
No 119
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=6.2e-17 Score=164.75 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1938 ~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
.|+.-+..++.+|+ |..++.|.+++++.++||||.+ |++||||++|++||+.++|.++++|..||.|||.||
T Consensus 3 ~l~~~L~~~~~~~~-------~~~s~~F~~PV~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na 74 (99)
T cd05508 3 QLSKLLKFALERMK-------QPGAEPFLKPVDLEQFPDYAQY-VFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNA 74 (99)
T ss_pred HHHHHHHHHHHHHh-------CcCcchhcCCCChhhCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34555666666663 5679999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
+.||+++|.++.+|..|.++|...|
T Consensus 75 ~~YN~~~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 75 IIYNGGDHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999997643
No 120
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.68 E-value=9.2e-17 Score=166.87 Aligned_cols=102 Identities=17% Similarity=0.282 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
+...|..++.+|.. +..+..|+.+++..++||||++ |++||||.+|..||++++|.++.+|..||.|||+||+
T Consensus 4 lr~~L~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~v-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 76 (112)
T cd05528 4 LRLFLRDVLKRLAS------DKRFNAFTKPVDEEEVPDYYEI-IKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNAL 76 (112)
T ss_pred HHHHHHHHHHHHHh------CCCchhhcCCCCccccCcHHHH-HcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHH
Confidence 34457888888863 4677999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCC----cHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2019 QFYGFS----HEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2019 ~yn~~~----sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
.||+++ |.+|.+|+.|+++|..++...+|
T Consensus 77 ~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 77 EYNPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred HHCCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999995 79999999999999999999888
No 121
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=8.2e-17 Score=167.23 Aligned_cols=96 Identities=14% Similarity=0.250 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000099 1943 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2022 (2240)
Q Consensus 1943 ck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~ 2022 (2240)
.+.|+++|. -+..+..|+.+|.+..+|+||++ |++||||.+|++||+.++|.++.+|..||.|||.||+.||+
T Consensus 5 l~~ii~~l~------~~~~s~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 77 (112)
T cd05511 5 LDEIVNELK------NLPDSWPFHTPVNKKKVPDYYKI-IKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNG 77 (112)
T ss_pred HHHHHHHHH------hCCCchhhcCCCChhhcccHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 456777775 35688999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2023 FSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2023 ~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
++|.+|.+|..|+++|.+++...
T Consensus 78 ~~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 78 PDSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 122
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.68 E-value=3e-15 Score=196.07 Aligned_cols=372 Identities=16% Similarity=0.158 Sum_probs=202.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
.+|.++|.+++..+.... .+...+|...||+|||..++.++...+.. .+.+|||||.. |+.||...|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 479999999999887643 34557999999999999998877766542 35799999976 77899999999874 56
Q ss_pred EEEEecchh--hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC--chhHH-----HHHh-hc
Q 000099 1078 CIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD--RESVL-----ARDL-DR 1147 (2240)
Q Consensus 1078 Vvvy~Gskd--eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN--~~SKl-----skaL-k~ 1147 (2240)
+.+++|... ++...+. .+..+..+|||+|+..+. +.-.++.+|||||+|...- ..... ...+ ..
T Consensus 218 v~~~~s~~s~~~r~~~~~-~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~ 291 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWR-KAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK 291 (679)
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh
Confidence 777777533 3333332 244567899999998764 2234678999999998632 11111 1111 12
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~-kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
......|++||||-. ..++.... +.+.. -...+.+. .+.-..... + ...+.. ..-...+.+
T Consensus 292 ~~~~~~il~SATps~---~s~~~~~~----g~~~~-~~l~~r~~~~~~p~v~~i---d---~~~~~~----~~~~~~ls~ 353 (679)
T PRK05580 292 LENIPVVLGSATPSL---ESLANAQQ----GRYRL-LRLTKRAGGARLPEVEII---D---MRELLR----GENGSFLSP 353 (679)
T ss_pred ccCCCEEEEcCCCCH---HHHHHHhc----cceeE-EEeccccccCCCCeEEEE---e---chhhhh----hcccCCCCH
Confidence 334468889999942 22211110 00000 00000000 000000000 0 000000 000000111
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
.++..+++.+.. .....+.++ .. ++... . +..-|.
T Consensus 354 ~l~~~i~~~l~~----g~qvll~~n---------------------rr---------------Gy~~~----~-~C~~Cg 388 (679)
T PRK05580 354 PLLEAIKQRLER----GEQVLLFLN---------------------RR---------------GYAPF----L-LCRDCG 388 (679)
T ss_pred HHHHHHHHHHHc----CCeEEEEEc---------------------CC---------------CCCCc----e-EhhhCc
Confidence 111111111110 000111110 00 00000 0 011111
Q ss_pred CC----CCCCCC-ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCC
Q 000099 1307 HP----LLNYPY-FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTS 1379 (2240)
Q Consensus 1307 HP----~L~~p~-~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs 1379 (2240)
+. .+..+. +........+..||....+....+.+ |.. .|..+....+.+++.|... ++++.++|++++
T Consensus 389 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~--~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~ 463 (679)
T PRK05580 389 WVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPEC---GST--DLVPVGPGTERLEEELAELFPEARILRIDRDTT 463 (679)
T ss_pred CccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCC---cCC--eeEEeeccHHHHHHHHHHhCCCCcEEEEecccc
Confidence 11 111000 00001111223333322222112211 111 2444455667777778765 889999999986
Q ss_pred --HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC---CCh---------hhHHHHhhhhhccCCcc
Q 000099 1380 --LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD---PNP---------KNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1380 --~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p---WNP---------~~d~QAiGRAhRIGQKK 1445 (2240)
.+++++++++|.+++.+ ||++|+..+.|+|++.++.|+++|.| ..| ..+.|+.||++|.+...
T Consensus 464 ~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g 540 (679)
T PRK05580 464 RRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPG 540 (679)
T ss_pred ccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCC
Confidence 46799999999987666 78999999999999999999888776 223 67999999999998888
Q ss_pred eEEEEEE
Q 000099 1446 EVKVIYM 1452 (2240)
Q Consensus 1446 eV~VyrL 1452 (2240)
.|.+...
T Consensus 541 ~viiqT~ 547 (679)
T PRK05580 541 EVLIQTY 547 (679)
T ss_pred EEEEEeC
Confidence 8876554
No 123
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.68 E-value=1e-14 Score=193.15 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=89.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHh---cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEE
Q 000099 1344 GHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420 (2240)
Q Consensus 1344 GhKVLIFSQ~t~~LDiLed~L~~---rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVI 1420 (2240)
...+|||+.....++.+.+.|.. .++.++.|||+++.++|.++++.|..+.. -|||||+++++||++.++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r---kVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR---KVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe---EEEEecchHhhcccccCceEEE
Confidence 56899999999999999999987 47899999999999999999999986433 3799999999999999999999
Q ss_pred EcCCC----CChhh--------------HHHHhhhhhccCCcceEEEEEEeh
Q 000099 1421 IYDPD----PNPKN--------------EEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1421 ifD~p----WNP~~--------------d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.++.+ +||.. +.||.||++|.+ +=.+|+|++
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~---~G~cyrL~t 334 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE---PGVCYRLWS 334 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC---CCEEEEeCC
Confidence 99876 45554 789999999983 445567765
No 124
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.68 E-value=6.2e-15 Score=195.87 Aligned_cols=317 Identities=20% Similarity=0.209 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---P- 1074 (2240)
.|+.||.++++.+.. +.+.|+.-.||+|||..++..|...+. +.....+|+|-|+. |..+....|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999988876 889999999999999999998877665 34445889999976 5666888888885 4
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh------hhhccccCcceEecccccccCC-chhHHHHHhhc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDR 1147 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~ 1147 (2240)
.+.+..|.|.....++. .+.....+||||+|+++... ...+....++||||||+|-+.. ..|-+.-.+++
T Consensus 145 ~v~~~~y~Gdt~~~~r~---~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 145 KVTFGRYTGDTPPEERR---AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred cceeeeecCCCChHHHH---HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 57788888865433221 35567899999999998652 1222223589999999999876 34444444443
Q ss_pred c-------c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhh-hcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000099 1148 Y-------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (2240)
Q Consensus 1148 L-------k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~-F~kPf~~~g~~~~~e~d~l~~Ee~~lii~ 1218 (2240)
+ . ....++.|||- ++...|... |...|... ..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~-v~------------------ 262 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVP-VD------------------ 262 (851)
T ss_pred HHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceee-cc------------------
Confidence 3 1 34578888883 122222222 22221110 00
Q ss_pred HHHHHhhHHHHHhhhhhhccCCCCceEEEEE-eccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHH
Q 000099 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLR-CRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297 (2240)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLP~KvE~vV~-c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~ni 1297 (2240)
+.--|....+++. -+.......
T Consensus 263 ------------------~~g~~~~~~~~~~~~p~~~~~~~--------------------------------------- 285 (851)
T COG1205 263 ------------------EDGSPRGLRYFVRREPPIRELAE--------------------------------------- 285 (851)
T ss_pred ------------------CCCCCCCceEEEEeCCcchhhhh---------------------------------------
Confidence 0001111111111 100000000
Q ss_pred HHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHH----HHHHhcC----c
Q 000099 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE----EYLQWRQ----L 1369 (2240)
Q Consensus 1298 lmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLe----d~L~~rG----i 1369 (2240)
. ....+...+..++..+...+-++|+|+.+...+..+. ..+...+ .
T Consensus 286 -------------------------~-~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~ 339 (851)
T COG1205 286 -------------------------S-IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLD 339 (851)
T ss_pred -------------------------h-cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhh
Confidence 0 0123455666777777888999999999999999886 3344444 5
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcceEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
.+....|++..++|.++...|+.++.. ++++|.++..|+|+...|.||++-.|- .-..+.|+.||++|-+|.--+.
T Consensus 340 ~v~~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~ 416 (851)
T COG1205 340 AVSTYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVL 416 (851)
T ss_pred heeeccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEE
Confidence 577889999999999999999987776 899999999999999999999999999 8899999999999999554443
Q ss_pred E
Q 000099 1449 V 1449 (2240)
Q Consensus 1449 V 1449 (2240)
+
T Consensus 417 ~ 417 (851)
T COG1205 417 V 417 (851)
T ss_pred E
Confidence 3
No 125
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.67 E-value=9.8e-17 Score=162.77 Aligned_cols=96 Identities=18% Similarity=0.332 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
++.|..+|++|.. +..+.+|..+ |.+.++|+||++ |.+||||.+|+.||+.+.|.++.+|..||+|||.||
T Consensus 2 ~~~c~~il~~l~~------~~~~~~F~~pv~~~~~~~p~Y~~~-I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 74 (99)
T cd05506 2 MKQCGTLLRKLMK------HKWGWVFNAPVDVVALGLPDYFDI-IKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANA 74 (99)
T ss_pred HHHHHHHHHHHHh------CCCCccccCCCCccccCCCCHHHH-HcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999974 3457899887 446689999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
+.||+++|.+|.+|..|+++|..+|
T Consensus 75 ~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 75 MRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 126
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.67 E-value=1.2e-16 Score=162.32 Aligned_cols=91 Identities=10% Similarity=0.259 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
...|+.++.+|. .+..+..|+.++.+.++||||++ |++||||.+|++||++++|.++++|..||.|||.||+.
T Consensus 3 ~~~l~~il~~l~------~~~~~~~F~~pVd~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 75 (98)
T cd05512 3 EVLLRKTLDQLQ------EKDTAEIFSEPVDLSEVPDYLDH-IKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLA 75 (98)
T ss_pred HHHHHHHHHHHH------hCCCchhhcCCCCccccCCHHHH-hcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 346778888886 47889999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDL 2037 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~ 2037 (2240)
||+++|.+|++|..|++.
T Consensus 76 yN~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 76 YNAKDTIFYRAAVRLRDQ 93 (98)
T ss_pred HCCCCCHHHHHHHHHHHh
Confidence 999999999999999874
No 127
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.66 E-value=1.8e-16 Score=161.10 Aligned_cols=92 Identities=18% Similarity=0.283 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
+++.|.+|++.|.. +..+.+|+.++.....||||++ |++||||.+|.+||++++|.++++|..||.|||.||+
T Consensus 2 l~~~l~~il~~l~~------~~~~~~F~~PV~~~~~pdY~~v-Ik~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 74 (98)
T cd05513 2 LQKALEQLIRQLQR------KDPHGFFAFPVTDFIAPGYSSI-IKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAM 74 (98)
T ss_pred HHHHHHHHHHHHHc------CCccccccCcCCccccccHHHH-HcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 35678899999873 3457799999998999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDL 2037 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~ 2037 (2240)
.||+++|.+|++|..|...
T Consensus 75 ~yN~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 75 KYNKPDTIYYKAAKKLLHS 93 (98)
T ss_pred HHCCCCCHHHHHHHHHHHh
Confidence 9999999999999999754
No 128
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.65 E-value=2.4e-15 Score=195.08 Aligned_cols=314 Identities=22% Similarity=0.281 Sum_probs=203.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-----hCCCCC-eEEEechH-HHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-----KGNYGP-HLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-----kg~~GP-~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
...+|.|..++-.+.+ +..+|-...+|+|||+..+..+...... .+. || .|||||+. +..|..+++.+
T Consensus 386 ~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd-GPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD-GPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCC-CceEEEEcCCHHHHHHHHHHHHH
Confidence 3677888888877766 8888999999999999997665533322 223 55 58899987 45555555555
Q ss_pred HC--CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh-----hhccccCcceEecccccccCC--chhHHH
Q 000099 1072 WL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-----SKLSKVDWKYIIIDEAQRMKD--RESVLA 1142 (2240)
Q Consensus 1072 w~--PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~-----s~L~kikWd~VIIDEAHrLKN--~~SKls 1142 (2240)
|+ -++.+++.+|.......+ .+...+ ..|+|+|.+.++.-. ....-.+..|||+|||++|.. ..-..+
T Consensus 461 f~k~l~ir~v~vygg~~~~~qi--aelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~ 537 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQI--AELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQIT 537 (997)
T ss_pred HHhhcCceEEEecCCccHHHHH--HHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccc
Confidence 54 245555544544433332 123333 899999999876532 223334577999999999842 111122
Q ss_pred HHhhccccce-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1143 RDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1143 kaLk~Lks~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
+.|..+...+ .++.++|
T Consensus 538 ~Ii~nlrpdrQtvlfSat-------------------------------------------------------------- 555 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSAT-------------------------------------------------------------- 555 (997)
T ss_pred hHHhhcchhhhhhhhhhh--------------------------------------------------------------
Confidence 2222222111 1111111
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
-|-.+..++..|.. +|- +++|-.. -.+|..+ .+.
T Consensus 556 ---fpr~m~~la~~vl~-~Pv--eiiv~~~-----svV~k~V-----------------------------------~q~ 589 (997)
T KOG0334|consen 556 ---FPRSMEALARKVLK-KPV--EIIVGGR-----SVVCKEV-----------------------------------TQV 589 (997)
T ss_pred ---hhHHHHHHHHHhhc-CCe--eEEEccc-----eeEeccc-----------------------------------eEE
Confidence 01111222222333 221 1111100 0000000 000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHH
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~e 1381 (2240)
-.+|. ....||..|..||..... ..++||||+....+|.|.+-|...||.+..|||+.+..
T Consensus 590 v~V~~------------------~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~ 650 (997)
T KOG0334|consen 590 VRVCA------------------IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQH 650 (997)
T ss_pred EEEec------------------CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchH
Confidence 00110 024588888888887665 77999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+|...|.+|+++.. .+|++|+++++|||+.....||+||.+--...|++|.||++|.|.+....+|
T Consensus 651 dR~sti~dfK~~~~---~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 651 DRSSTIEDFKNGVV---NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred HHHhHHHHHhccCc---eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 99999999997444 4899999999999999999999999999999999999999999988744333
No 129
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=8e-16 Score=166.77 Aligned_cols=154 Identities=27% Similarity=0.377 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Ps 1075 (2240)
+||+||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 69999999999999877654 88999999999999999998888774 89999997 6889999999888766
Q ss_pred CeEEEEecchhh----------HhHHHHHHHhhcCCcEEEEcHHHHHHhhhh-------------ccccCcceEeccccc
Q 000099 1076 VSCIYYVGAKDQ----------RSRLFSQEVAALKFNVLVTTYEFIMYDRSK-------------LSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1076 lkVvvy~Gskde----------Rk~l~~qei~~~~fdVVITTYE~L~kD~s~-------------L~kikWd~VIIDEAH 1132 (2240)
............ ..............+++++|+..+...... +....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 544432211000 000011123456778999999999765322 233478999999999
Q ss_pred ccCCchhHHHHHhhccccceEEEeecCCC
Q 000099 1133 RMKDRESVLARDLDRYRCQRRLLLTGTPL 1161 (2240)
Q Consensus 1133 rLKN~~SKlskaLk~Lks~~RLLLTGTPL 1161 (2240)
++.+... ++.+..+...++|+|||||.
T Consensus 157 ~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9865332 55555588889999999995
No 130
>PRK14701 reverse gyrase; Provisional
Probab=99.65 E-value=3.3e-15 Score=207.38 Aligned_cols=342 Identities=16% Similarity=0.246 Sum_probs=194.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-- 1074 (2240)
|.+++++|..++..++. +.+.++..+||+|||...+.+..++. . ....+|||+|+. |+.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~-~--~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA-L--KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH-h--cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34699999999988886 77889999999999984333332222 1 224799999987 66788888888764
Q ss_pred --CCeEEEEecchhhHhHH-HHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccc
Q 000099 1075 --SVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l-~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~ 1151 (2240)
++.+.+++|+.....+. ....+..+.++|+|+|++.+......+...++++|||||||+|....-.+-+.|
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L------ 223 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSL------ 223 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhh------
Confidence 35667777765433221 111234567999999999887765444446799999999999853111011111
Q ss_pred eEEEeecCCCCCCHH-HHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1152 RRLLLTGTPLQNDLK-ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~-ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
-|-|- ...+. ..|.++.. . + ...... . ...+.+|...+.
T Consensus 224 ---~llGF--~~e~~~~~~~il~~---~--------------~------~~~~~~--~-----~~~~~~l~~~~~----- 263 (1638)
T PRK14701 224 ---QLLGF--YEEIIEKAWKIIYL---K--------------K------QGNIED--A-----MEKREILNKEIE----- 263 (1638)
T ss_pred ---hcCCC--hHHHHHHHHHhhhc---c--------------c------ccccch--h-----hhhhhhhhhhhh-----
Confidence 00110 00000 01111110 0 0 000000 0 001122222220
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
.+|......+.+..|...+.....+... .+.+.... .
T Consensus 264 --------~~~~~~~~ll~~SAT~~~r~~~~~l~~~-~l~f~v~~------------------------------~---- 300 (1638)
T PRK14701 264 --------KIGNKIGCLIVASATGKAKGDRVKLYRE-LLGFEVGS------------------------------G---- 300 (1638)
T ss_pred --------hcCCCccEEEEEecCCCchhHHHHHhhc-CeEEEecC------------------------------C----
Confidence 1233322233222221111000000000 00000000 0
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhH---HHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~---LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
.+....+...++.........|..++..+ +..+||||+.... ++.|..+|...|+++..+||. |...+
T Consensus 301 -~~~lr~i~~~yi~~~~~~k~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l 371 (1638)
T PRK14701 301 -RSALRNIVDVYLNPEKIIKEHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGF 371 (1638)
T ss_pred -CCCCCCcEEEEEECCHHHHHHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHH
Confidence 00000011111111111124455666543 6789999988764 589999999999999999994 89999
Q ss_pred HHHhcCCCCccEEEEec----ccccccCCCCC-CCeEEEcCCCC---ChhhHHHHh-------------hhhhccCCcce
Q 000099 1388 VDFNSHDSDCFIFLLSI----RAAGRGLNLQS-ADTVIIYDPDP---NPKNEEQAV-------------ARAHRIGQKRE 1446 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLST----rAGGeGLNLQa-ADtVIifD~pW---NP~~d~QAi-------------GRAhRIGQKKe 1446 (2240)
++|.+++.+ +||+| +++++|||++. +.+|||||.|- |...+.|.. ||++|-|..-+
T Consensus 372 ~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 372 DLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 999986665 67777 58899999998 99999999998 777666655 99999887644
Q ss_pred E
Q 000099 1447 V 1447 (2240)
Q Consensus 1447 V 1447 (2240)
.
T Consensus 449 ~ 449 (1638)
T PRK14701 449 G 449 (1638)
T ss_pred h
Confidence 4
No 131
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.2e-14 Score=184.81 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=76.5
Q ss_pred HHHHHHHHHhc--CceEEeecCCCCHHHH--HHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC---C--
Q 000099 1357 LDILEEYLQWR--QLVYRRIDGTTSLEDR--ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP---N-- 1427 (2240)
Q Consensus 1357 LDiLed~L~~r--Giky~rLDGsTs~eER--eeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW---N-- 1427 (2240)
.+.+++.|... +.++.++|++++..++ .++++.|.+++.+ ||++|...+.|+|++.++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 56677777765 7899999999887655 8999999986666 799999999999999999998776662 2
Q ss_pred -------hhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1428 -------PKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1428 -------P~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
...+.|+.||++|.+....|.+..+
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 3678999999999998888876544
No 132
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.64 E-value=3.4e-14 Score=188.53 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=89.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh---cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~---rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
.+..+|||+.....++.+.+.|.. .++.++.+||+++.++|.+++..|..+. +-|||||+++.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~---rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR---RKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC---eEEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 5788999999999999999999997643 3489999999999999999999
Q ss_pred EEcCCC----CCh--------------hhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1420 IIYDPD----PNP--------------KNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1420 IifD~p----WNP--------------~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|.++.+ |+| ..+.||.||++|.+ +-.+|+|++
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t 337 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYS 337 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecC
Confidence 997765 332 36899999999973 455667755
No 133
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.64 E-value=4.8e-16 Score=153.83 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
...|..+++.|.... +.++..|..+|++..+|+||++ |++||||.+|++||+.+.|.++.+|..||.|||.||+.
T Consensus 2 ~~~~~~i~~~l~~~~----~~~~~~F~~~~~~~~~~~Y~~~-i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 76 (99)
T cd04369 2 KKKLRSLLDALKKLK----RDLSEPFLEPVDPKEAPDYYEV-IKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKT 76 (99)
T ss_pred HHHHHHHHHHHHhhc----ccccHHHhcCCChhcCCCHHHH-HhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 357999999997554 7899999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
||+.+|.++..|..|+.+|..+
T Consensus 77 ~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 77 YNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 134
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=1.6e-13 Score=179.60 Aligned_cols=416 Identities=14% Similarity=0.193 Sum_probs=237.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~Ps 1075 (2240)
..++-|+.|.--|. .|-|.-..||.|||++++..+..... .+ ..++||+|+..|. +|...|.+|+ +
T Consensus 82 ~~ydvQliGg~~Lh------~G~Iaem~TGeGKTL~a~Lpa~~~al-~G--~~V~VvTpn~yLA~qd~e~m~~l~~~l-G 151 (896)
T PRK13104 82 RHFDVQLIGGMVLH------EGNIAEMRTGEGKTLVATLPAYLNAI-SG--RGVHIVTVNDYLAKRDSQWMKPIYEFL-G 151 (896)
T ss_pred CcchHHHhhhhhhc------cCccccccCCCCchHHHHHHHHHHHh-cC--CCEEEEcCCHHHHHHHHHHHHHHhccc-C
Confidence 34445888765442 35588899999999987665543332 22 3589999998553 3666666665 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHH----HHhhhhcc-----ccCcceEecccccccCCchhHHHHHhh
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI----MYDRSKLS-----KVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L----~kD~s~L~-----kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
+.+.++.|+.....+. .....+|+++|...| .++.-.+. ...+.++||||+|.|.= .
T Consensus 152 Ltv~~i~gg~~~~~r~-----~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI---------D 217 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQ-----EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI---------D 217 (896)
T ss_pred ceEEEEeCCCCHHHHH-----HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh---------h
Confidence 7777776654332221 123579999999987 33331221 14789999999999841 1
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhh----hcccc-------cC-----------C-hHHHHhhhcCCcccCCCCCCC
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-------FD-----------N-RKAFHDWFSQPFQKEGPTHNA 1203 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-------F~-----------S-~~sF~e~F~kPf~~~g~~~~~ 1203 (2240)
. +..-|++||.+- ...++|..++. |..+. |. . ...+.+.+ +...+.....
T Consensus 218 e--ArtPLIISg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~---~~~~~il~~~ 290 (896)
T PRK13104 218 E--ARTPLIISGAAE--DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEEL---LTKAKLLDPG 290 (896)
T ss_pred c--cCCceeeeCCCc--cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHH---HHhCCccCCc
Confidence 1 234577888653 22445544443 32220 00 0 00011110 0000000000
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhHHHH-HhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchh
Q 000099 1204 DDDWLETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPED 1275 (2240)
Q Consensus 1204 e~d~l~~Ee~~lii~RLhklLrPFmL-RRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~ 1275 (2240)
+ .+.........+.+...|+...+ .|-+.=|.. +....+|. ..| .+..-+.+.+.....+.+....
T Consensus 291 ~--~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~ 364 (896)
T PRK13104 291 E--SLYHASNIMLMHHVNAALKAHAMFHRDIDYIVK---DNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN 364 (896)
T ss_pred c--cccCchhhhHHHHHHHHHHHHHHhcCCCceEEE---CCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc
Confidence 0 00000111123334444443322 221111111 11111211 222 2333444445443322222111
Q ss_pred HHhhhhcC---hh---h--HHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHh
Q 000099 1276 EKRRVQKN---PI---Y--QAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQR 1342 (2240)
Q Consensus 1276 e~~~l~~~---~~---~--~ak~~~sL~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~a 1342 (2240)
. .+..- .. | ..+...+.......+.++-+.+.+..|..... ..........|+..+..-+.++..
T Consensus 365 ~--t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~ 442 (896)
T PRK13104 365 Q--TLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV 442 (896)
T ss_pred e--eeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh
Confidence 0 00000 00 0 00000011122345666665554444432211 111223345688888888888899
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC-------
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------- 1415 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa------- 1415 (2240)
.|..|||||.+....+.|..+|...|+++..|+|.....+|..+.+.|+.+ . ++|+|+.+|+|+|+.=
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNmAGRGtDI~Lggn~~~~ 517 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNMAGRGTDIVLGGSLAAD 517 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccCccCCcceecCCchhhh
Confidence 999999999999999999999999999999999999999999999999864 2 8999999999999762
Q ss_pred -------------------------------CCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1416 -------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1416 -------------------------------ADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
-=+||.-..+-|...+.|-.||++|-|......+| +++|+.+++
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~--lSleD~l~~ 592 (896)
T PRK13104 518 LANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY--LSLEDNLMR 592 (896)
T ss_pred hhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE--EEcCcHHHH
Confidence 23789999999999999999999999998877655 345555544
No 135
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=6.5e-15 Score=182.21 Aligned_cols=321 Identities=17% Similarity=0.230 Sum_probs=203.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~k----g~~GP~LIVVP~S-LL~QW~~Ef~Kw~ 1073 (2240)
...|-|..++..++. +.+++-|..+|.|||+..++.|.. |.... ...-..+||.|.. |+.|-..|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 456788888888887 778999999999999998886544 33333 2223679999977 6678889999887
Q ss_pred --CC--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh----ccccCcceEecccccccCCchhHHHHHh
Q 000099 1074 --PS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK----LSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1074 --Ps--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~----L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
++ +.+..+........+ ........++++|.|+..++..... +.-....++|+||++++.++. -+...+
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk--~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~-~f~~Ql 310 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQK--PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPE-FFVEQL 310 (593)
T ss_pred CCCCCchhhhhcccccchhhc--cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChh-hHHHHH
Confidence 32 333333222111111 1123345689999999998877543 344456779999999998761 111111
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
.++|+.+.- |.+. ..-|...+. .. +..+..++
T Consensus 311 --------------------a~I~sac~s--~~i~--~a~FSat~~----------------~~-------VEE~~~~i- 342 (593)
T KOG0344|consen 311 --------------------ADIYSACQS--PDIR--VALFSATIS----------------VY-------VEEWAELI- 342 (593)
T ss_pred --------------------HHHHHHhcC--cchh--hhhhhcccc----------------HH-------HHHHHHHh-
Confidence 111111110 1110 000100000 00 00011111
Q ss_pred HHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
+.++ ...+|- ....+ ++.+.+=
T Consensus 343 -------~~~~-------~~vivg--~~~sa--------------------------------------~~~V~Qe---- 364 (593)
T KOG0344|consen 343 -------KSDL-------KRVIVG--LRNSA--------------------------------------NETVDQE---- 364 (593)
T ss_pred -------hccc-------eeEEEe--cchhH--------------------------------------hhhhhhh----
Confidence 1111 001111 11100 0000000
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHH-HhcCceEEeecCCCCHHHHH
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L-~~rGiky~rLDGsTs~eERe 1384 (2240)
++| ....-+|+..+..++... -.-.+|||.|..+-+..|...| ..-++.+..+||.-++.+|.
T Consensus 365 ---lvF-----------~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 365 ---LVF-----------CGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRD 428 (593)
T ss_pred ---hee-----------eecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHH
Confidence 000 112235666666666654 3468999999999999999999 78899999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+.+++|+.+... +|++|++.++|||+.+++.||+||.|-+-..|++|+||++|.|+......||-
T Consensus 429 e~~~~FR~g~Iw---vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 429 ETMERFRIGKIW---VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred HHHHHHhccCee---EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 999999975444 69999999999999999999999999999999999999999999877655554
No 136
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.63 E-value=1e-14 Score=191.71 Aligned_cols=309 Identities=23% Similarity=0.195 Sum_probs=193.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-Pslk 1077 (2240)
+|++.|..+|.-.+. .+.|.|+|.+||+|||++++..|...+.. ..++++.|||.. |...-.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~--~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLE--GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 799999999965443 17889999999999999998877765542 257999999965 6777888888554 3789
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCc------hhHHHHHhhccc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR------ESVLARDLDRYR 1149 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~------~SKlskaLk~Lk 1149 (2240)
|.+++|.-+... ......+|+||||+.+-.-... .--...++|||||+|.+... .+-.++....-.
T Consensus 106 V~~~TgD~~~~~------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 106 VGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EEEecCCcccch------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 999999876442 2346789999999987432111 12236789999999999764 122333222222
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
.-+.++||||- .|.. +|-+|++..... ...+|.-+
T Consensus 180 ~~rivgLSATl--pN~~------------------evA~wL~a~~~~-------------------------~~~rp~~l 214 (766)
T COG1204 180 LIRIVGLSATL--PNAE------------------EVADWLNAKLVE-------------------------SDWRPVPL 214 (766)
T ss_pred ceEEEEEeeec--CCHH------------------HHHHHhCCcccc-------------------------cCCCCccc
Confidence 34788999993 2333 344444321100 00011111
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
+|. .|.. ..+..+.-.. +
T Consensus 215 ~~~-------v~~~-~~~~~~~~~~----------------------k-------------------------------- 232 (766)
T COG1204 215 RRG-------VPYV-GAFLGADGKK----------------------K-------------------------------- 232 (766)
T ss_pred ccC-------Cccc-eEEEEecCcc----------------------c--------------------------------
Confidence 110 0000 0000000000 0
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-------------C--------
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-------------Q-------- 1368 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-------------G-------- 1368 (2240)
.....+...+..++.+..+.+.-|||||..+......+..|... .
T Consensus 233 --------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 298 (766)
T COG1204 233 --------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILI 298 (766)
T ss_pred --------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccccc
Confidence 00001122334445556677888999988887766666665520 0
Q ss_pred ----------------ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-----cC----
Q 000099 1369 ----------------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-----YD---- 1423 (2240)
Q Consensus 1369 ----------------iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi-----fD---- 1423 (2240)
..+..-|.+++.++|.-+-+.|+.+.-+ +|+||...+.|+||++ ++||+ ||
T Consensus 299 ~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g 374 (766)
T COG1204 299 PETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGG 374 (766)
T ss_pred ccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCcc-eEEEEeeeEEEcCCCC
Confidence 0122346678899999999999975554 7999999999999994 55555 44
Q ss_pred -CCCChhhHHHHhhhhhccCCc
Q 000099 1424 -PDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1424 -~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
-+-++..+.|..|||+|.|=.
T Consensus 375 ~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 375 IVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred eEECchhhHhhccCcCCCCCcC
Confidence 334678899999999998844
No 137
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.63 E-value=1.5e-15 Score=156.28 Aligned_cols=120 Identities=31% Similarity=0.452 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000099 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (2240)
Q Consensus 1328 GKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAG 1407 (2240)
.|+..+..++.++...+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+.++ ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888888887767899999999999999999999999999999999999999999999999755 4588899999
Q ss_pred cccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1408 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1408 GeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++|+|++.+++||+++++|++..++|++||++|.|+++.|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887664
No 138
>PRK09694 helicase Cas3; Provisional
Probab=99.62 E-value=1.8e-13 Score=181.86 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcC---ceEEeecCCCCHHHH----HHHHHHH-hcCCCCccEEEEe
Q 000099 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDR----ESAIVDF-NSHDSDCFIFLLS 1403 (2240)
Q Consensus 1332 lLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rG---iky~rLDGsTs~eER----eeaIk~F-Ns~Ds~~fVfLLS 1403 (2240)
++..++.. ...+++|||||+.+..+..+.+.|+..+ +.+..+||.++..+| .++++.| +++......|||+
T Consensus 549 ~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 549 LLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 34444443 3578899999999999999999998765 678999999999999 5678899 4332222357999
Q ss_pred cccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1404 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1404 TrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
|.+...|||+ ++|+||....| ...++||+||+||.|.+
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999 58999987666 57899999999999875
No 139
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.61 E-value=9.1e-16 Score=188.41 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
-+.|+.++..+....+.+|+.+..+|+.+|+++++|+||.+ |+.||||.+|+.+|+.++|.++++|+.||.|||+||+.
T Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~i-Ik~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~ 222 (371)
T COG5076 144 YADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEI-IKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKL 222 (371)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccCCccccCCChhee-ecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 44688888888888899999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDLLKIAFPDT 2049 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~~k~~fP~~ 2049 (2240)
||+++|.||.+|..|.++|...++.+.+..
T Consensus 223 yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 223 YNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred ccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999777643
No 140
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=9.5e-13 Score=171.75 Aligned_cols=423 Identities=14% Similarity=0.177 Sum_probs=227.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kw~ 1073 (2240)
|...++-|+-|.--|. .|.|.-..||.|||+++...+ ++.... ...+-||+|+..|.. |...+.+++
T Consensus 78 g~~~~dvQlig~l~l~------~G~iaEm~TGEGKTLvA~l~a-~l~al~--G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 78 GLRPFDVQIIGGIVLH------EGNIAEMKTGEGKTLTATLPV-YLNALT--GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCCchhHHHHHHHHh------cCCcccccCCCCCcHHHHHHH-HHHHHc--CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 4345566988865442 345888999999999985444 333222 346788899886643 666666655
Q ss_pred CCCeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHH-----HHh----hhhccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 PslkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L-----~kD----~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
++.|.+..+.. ..|+. ....+|+-+|-..| +.. ...+-...+.++||||++.+.=
T Consensus 149 -Gl~vg~i~~~~~~~~r~~-------~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi------ 214 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEKRA-------AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI------ 214 (796)
T ss_pred -CCeEEEeCCCCCHHHHHH-------HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheee------
Confidence 57777776643 33322 23567777775443 222 1222234789999999998741
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCCh------HHHHhhhcCCcccCCCCCCCChhhHHH------
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------KAFHDWFSQPFQKEGPTHNADDDWLET------ 1210 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------~sF~e~F~kPf~~~g~~~~~e~d~l~~------ 1210 (2240)
. .+..-|++||.+- ...++|..++-+...+-... ......|..--. .....-.+......
T Consensus 215 ---D--eartPLiisg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~-~k~v~lte~G~~~~e~~~~i 286 (796)
T PRK12906 215 ---D--EARTPLIISGQAE--KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEK-TKTISLTEQGIRKAEKLFGL 286 (796)
T ss_pred ---c--cCCCceecCCCCC--cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcc-cCceeecHHHHHHHHHHcCC
Confidence 1 1233567777652 33345544433221111000 000000000000 00000000000000
Q ss_pred -----HHHHHHHHHHHHHhhHH-HHHhhhhhhccCCCCceEEEEEe------ccCHHHHHHHHHHHHccCcccCchhHHh
Q 000099 1211 -----EKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRC------RMSAIQSAIYDWIKATGTLRVDPEDEKR 1278 (2240)
Q Consensus 1211 -----Ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~KvE~vV~c------~LS~~Qr~LYk~L~~~~~l~ld~~~e~~ 1278 (2240)
.......+.+...|+.. ++.+-+.=|. .+....+|.- +-..+..-+.+.+.....+.+.......
T Consensus 287 ~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV---~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~ 363 (796)
T PRK12906 287 DNLYDSENTALAHHIDQALRANYIMLKDIDYVV---QDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTL 363 (796)
T ss_pred ccccCchhhhHHHHHHHHHHHHHHHhcCCcEEE---ECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceee
Confidence 00001122233333332 2222221111 1122222210 1112333444444433322222111000
Q ss_pred ------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hh-hHhhcccHHHHHHHHHHHHHhcCCeE
Q 000099 1279 ------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KD-FLVKSCGKLWILDRILIKLQRTGHRV 1347 (2240)
Q Consensus 1279 ------~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls----~d-~LirsSGKLelLdrIL~kL~atGhKV 1347 (2240)
..+.......+...+.......++++-+.+.+..|...... .+ .......|+..|...+..+...+..|
T Consensus 364 a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pv 443 (796)
T PRK12906 364 ATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPV 443 (796)
T ss_pred eeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCE
Confidence 00000000000001111223456777666655544432211 11 12233458888888888888899999
Q ss_pred EEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC---CCC-----eE
Q 000099 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---SAD-----TV 1419 (2240)
Q Consensus 1348 LIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ---aAD-----tV 1419 (2240)
||||.+....+.|...|...|+++..|+|.....++..+...|.. +. ++|+|+.+|+|+|+. .+. +|
T Consensus 444 LI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATnmAGRGtDI~l~~~V~~~GGLhV 518 (796)
T PRK12906 444 LVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATNMAGRGTDIKLGPGVKELGGLAV 518 (796)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEeccccCCCCCCCCcchhhhCCcEE
Confidence 999999999999999999999999999999886666666555553 22 899999999999995 677 99
Q ss_pred EEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
|+++.|-|...|.|+.||++|.|.......| ++.++.++.
T Consensus 519 I~te~pes~ri~~Ql~GRtGRqG~~G~s~~~--~sleD~l~~ 558 (796)
T PRK12906 519 IGTERHESRRIDNQLRGRSGRQGDPGSSRFY--LSLEDDLMR 558 (796)
T ss_pred EeeecCCcHHHHHHHhhhhccCCCCcceEEE--EeccchHHH
Confidence 9999999999999999999999998877544 334555543
No 141
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.3e-12 Score=171.05 Aligned_cols=412 Identities=17% Similarity=0.233 Sum_probs=235.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-Q---W~~Ef~Kw~ 1073 (2240)
|...++-|+-|.--| +.|.|.-..||.|||++++..+ ++....+. .+-||+|+..|. + |...+.+++
T Consensus 79 g~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa-~l~aL~G~--~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 79 GMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPA-YLNALTGK--GVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHH-HHHHHcCC--CEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 434555588887533 2355888999999999875544 32222332 466999998653 3 555555544
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----h-----hhccccCcceEecccccccCCchhHHHHH
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----R-----SKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----~-----s~L~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
++++.+..|......+. .....+|+++|...|--| . ..+....+.++||||++.|.
T Consensus 150 -Glsv~~i~~~~~~~er~-----~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL--------- 214 (830)
T PRK12904 150 -GLSVGVILSGMSPEERR-----EAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL--------- 214 (830)
T ss_pred -CCeEEEEcCCCCHHHHH-----HhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe---------
Confidence 57777776654332211 113479999998877322 1 11233478999999999984
Q ss_pred hhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCCh------------------HHHHhhhcCCcccCCCCCCCChh
Q 000099 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------KAFHDWFSQPFQKEGPTHNADDD 1206 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------------------~sF~e~F~kPf~~~g~~~~~e~d 1206 (2240)
+.. +..-|++||.+- ...++|..++-+...+-... ....+.|... .
T Consensus 215 IDe--ArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~-----------~- 278 (830)
T PRK12904 215 IDE--ARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE-----------N- 278 (830)
T ss_pred ecc--CCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCc-----------c-
Confidence 122 233477777643 22345555544333221110 0111111100 0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHH-HhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHHh
Q 000099 1207 WLETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR 1278 (2240)
Q Consensus 1207 ~l~~Ee~~lii~RLhklLrPFmL-RRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~~ 1278 (2240)
+.........+.+...|+...+ .+-+.=|. .+....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 279 -ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV---~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~ 353 (830)
T PRK12904 279 -LYDPENIALVHHLNQALRAHELFKRDVDYIV---KDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTL 353 (830)
T ss_pred -ccChhhhHHHHHHHHHHHHHHHHhcCCcEEE---ECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceee
Confidence 0000111123334444443332 22221111 112222221 222 2333444444433322222111000
Q ss_pred ------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc-----hhhHhhcccHHHHHHHHHHHHHhcCCeE
Q 000099 1279 ------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS-----KDFLVKSCGKLWILDRILIKLQRTGHRV 1347 (2240)
Q Consensus 1279 ------~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls-----~d~LirsSGKLelLdrIL~kL~atGhKV 1347 (2240)
..+.......+...+.......|.++-+.+.+..|...... .........|+..|...+.++...+..|
T Consensus 354 a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpV 433 (830)
T PRK12904 354 ASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPV 433 (830)
T ss_pred eeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCE
Confidence 00000000000011112234567777666655544432211 1112233468899999998888899999
Q ss_pred EEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC-----------
Q 000099 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA----------- 1416 (2240)
Q Consensus 1348 LIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA----------- 1416 (2240)
||||......+.|...|...|+++..|+|. ..+|+..|..|...... ++|+|+.+|+|+|+.-.
T Consensus 434 LIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~ 508 (830)
T PRK12904 434 LVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALL 508 (830)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhh
Confidence 999999999999999999999999999995 77999999999865554 89999999999997743
Q ss_pred ---------------------------CeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1417 ---------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1417 ---------------------------DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
=+||.-..+-|...+.|..||++|-|.......| +++|+.++.
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~--lSleD~l~~ 578 (830)
T PRK12904 509 EEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY--LSLEDDLMR 578 (830)
T ss_pred hhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE--EEcCcHHHH
Confidence 3789999999999999999999999999887655 344555543
No 142
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.3e-14 Score=172.81 Aligned_cols=306 Identities=20% Similarity=0.254 Sum_probs=207.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-HHHHCC--CCe
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-LHKWLP--SVS 1077 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E-f~Kw~P--slk 1077 (2240)
.-..|..++.-++. +.+.+.-...|+|||.+....++..+.......-+||++|.+.|.+...+ +..|.. +.+
T Consensus 49 PSaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 49 PSAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred chHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 34457777766665 78888888999999999777776665444444567999999977664444 344443 345
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCC--chhHHHHHhhccccc-e
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ-R 1152 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lks~-~ 1152 (2240)
+..+.|....+.. .+.+.....+|++.|++.+..- ...|......+.|+||+..++. ...+++..+.++..+ .
T Consensus 125 v~~~igg~~~~~~--~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQ 202 (397)
T KOG0327|consen 125 VHACIGGTNVRRE--DQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQ 202 (397)
T ss_pred eeeecCcccchhh--hhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchh
Confidence 6655554443322 1234456689999999887643 3356666789999999999864 344566666666443 4
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.+++|||- ..|+..+ .. +|...|. .+-+.
T Consensus 203 v~l~SAT~----p~~vl~v-----------t~---~f~~~pv---------------------------------~i~vk 231 (397)
T KOG0327|consen 203 VVLLSATM----PSDVLEV-----------TK---KFMREPV---------------------------------RILVK 231 (397)
T ss_pred heeecccC----cHHHHHH-----------HH---HhccCce---------------------------------EEEec
Confidence 67777772 0111000 00 0000000 00000
Q ss_pred hhhhccCCCCceEEEEEeccC-HHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS-~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
|.+ ++ +.++.+|-
T Consensus 232 k~~----------------ltl~gikq~~i-------------------------------------------------- 245 (397)
T KOG0327|consen 232 KDE----------------LTLEGIKQFYI-------------------------------------------------- 245 (397)
T ss_pred chh----------------hhhhheeeeee--------------------------------------------------
Confidence 000 00 00000000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
...+ ..|+..|..+.. .-...+|||+...-++.|.+.|..+++....++|.+...+|..+++.|+
T Consensus 246 -----~v~k------~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~ 310 (397)
T KOG0327|consen 246 -----NVEK------EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFR 310 (397)
T ss_pred -----eccc------cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhh
Confidence 0000 016666666665 3456899999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
.+.+. +|++|+..++|+|++.++.||+||.|-|...|++|+||++|.|-+.-+
T Consensus 311 ~gssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~ 363 (397)
T KOG0327|consen 311 SGSSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVA 363 (397)
T ss_pred cCCce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCcee
Confidence 88777 899999999999999999999999999999999999999999966543
No 143
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.57 E-value=4.4e-15 Score=145.24 Aligned_cols=84 Identities=20% Similarity=0.364 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000099 1943 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2022 (2240)
Q Consensus 1943 ck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~ 2022 (2240)
|.++++.|. .+.++..|..+|....+|+||.+ |++||||.+|.+||+.+.|.++++|..||.+||.||+.||+
T Consensus 1 C~~il~~l~------~~~~~~~F~~~~~~~~~p~y~~~-i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~ 73 (84)
T PF00439_consen 1 CREILEELM------KHPISSPFSKPVDPKEYPDYYEI-IKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNP 73 (84)
T ss_dssp HHHHHHHHH------TSTTGGGGSSSTHTTTSTTHHHH-SSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHH------cCCCchhhcCCCChhhCCCHHHH-HhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 899999986 45599999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHH
Q 000099 2023 FSHEVRSEARK 2033 (2240)
Q Consensus 2023 ~~sev~~dA~~ 2033 (2240)
++|.+|.+|++
T Consensus 74 ~~s~~~~~A~~ 84 (84)
T PF00439_consen 74 PDSPIYKAAEK 84 (84)
T ss_dssp TTSHHHHHHHH
T ss_pred CcCHHHHHhcC
Confidence 99999999974
No 144
>COG4889 Predicted helicase [General function prediction only]
Probab=99.54 E-value=2.2e-14 Score=179.78 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=102.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC-CCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL-PSV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~-Psl 1076 (2240)
.+|||||..++....+.+..+-+|-|-+.+|+|||++++-+...+.. .++|++||. +||.|-.+|...-. -.+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 58999999999999999988888988888999999999988777654 578999996 57777444432211 012
Q ss_pred e-EEEEecchhhH------------------hHHHH---HHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEeccccc
Q 000099 1077 S-CIYYVGAKDQR------------------SRLFS---QEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1077 k-Vvvy~GskdeR------------------k~l~~---qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAH 1132 (2240)
. ..++...+-.| +.++. ......+.-||++||+.+-.-. ...-.-.|++||+||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 1 22222211111 01111 1112445679999999886532 33344579999999999
Q ss_pred ccCC------chhHHHHHh--hccccceEEEeecCC
Q 000099 1133 RMKD------RESVLARDL--DRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1133 rLKN------~~SKlskaL--k~Lks~~RLLLTGTP 1160 (2240)
|--. ..+..++.- ..+++..||.+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9743 122222211 134677899999999
No 145
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.54 E-value=7.6e-13 Score=174.97 Aligned_cols=307 Identities=19% Similarity=0.254 Sum_probs=209.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~Ps 1075 (2240)
.+-.|-|+.+++-+..=...+ ..-+||.++|-|||=+|+-.+-.. -...+.+.|+||+.+| .|..+.|...|.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA---V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA---VMDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH---hcCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 356688999998888655433 345999999999998876443221 2334689999999876 5577778877765
Q ss_pred CeEEE--E--ecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccc
Q 000099 1076 VSCIY--Y--VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1076 lkVvv--y--~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~ 1151 (2240)
+-|-+ . .-+.++.+.++ .....+..||||.|+..|.++..+ .+..+|||||=||+. -+.-..|+.+++.
T Consensus 670 fPV~I~~LSRF~s~kE~~~il-~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~ 742 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEIL-KGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEKLKELRAN 742 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHH-HHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHHHHHHhcc
Confidence 43333 2 22334444443 357789999999999988776443 467899999999985 3444567777665
Q ss_pred -eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1152 -RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1152 -~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
..|-||||||..+|. .+|.. + +.|.-+
T Consensus 743 VDvLTLSATPIPRTL~--Msm~G-----i--------------------------------------RdlSvI------- 770 (1139)
T COG1197 743 VDVLTLSATPIPRTLN--MSLSG-----I--------------------------------------RDLSVI------- 770 (1139)
T ss_pred CcEEEeeCCCCcchHH--HHHhc-----c--------------------------------------hhhhhc-------
Confidence 588899999988754 11111 0 000000
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
.-||.....|..-..+..
T Consensus 771 --------~TPP~~R~pV~T~V~~~d------------------------------------------------------ 788 (1139)
T COG1197 771 --------ATPPEDRLPVKTFVSEYD------------------------------------------------------ 788 (1139)
T ss_pred --------cCCCCCCcceEEEEecCC------------------------------------------------------
Confidence 123322222221110000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIV 1388 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReeaIk 1388 (2240)
...+-+.|++++. .|..|-..++....+..+...|+.. ..++...||.|+..+-++++.
T Consensus 789 ------------------~~~ireAI~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 789 ------------------DLLIREAILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred ------------------hHHHHHHHHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHH
Confidence 0011122344444 4667777778888888888888765 567888999999999999999
Q ss_pred HHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEEEe
Q 000099 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIYME 1453 (2240)
Q Consensus 1389 ~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (2240)
+|.+++-+ +|+||.....|||+++|||+|+-+.+ +--++..|-.||++|-...- +.|.++
T Consensus 850 ~F~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~A--YAYfl~ 910 (1139)
T COG1197 850 DFYNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQA--YAYFLY 910 (1139)
T ss_pred HHHcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceE--EEEEee
Confidence 99986666 79999999999999999999999998 68999999999999976443 444443
No 146
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.54 E-value=1.4e-13 Score=148.56 Aligned_cols=166 Identities=28% Similarity=0.306 Sum_probs=117.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~Kw~Ps- 1075 (2240)
..++++||.+++.+++... .++++..++|+|||..++.++...+.. ....++||++| ..++.+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKR-GKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcc-cCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3589999999999887521 788999999999999888877776653 22468999999 55789999999999876
Q ss_pred --CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhcc-
Q 000099 1076 --VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY- 1148 (2240)
Q Consensus 1076 --lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~L- 1148 (2240)
.....+.+..... .. . .......+|+++|++.+...... +....|++|||||+|.+.+ ....+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~-~~-~-~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 82 GLKVVGLYGGDSKRE-QL-R-KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred CeEEEEEeCCcchHH-HH-H-HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 3344444433211 11 1 23334459999999999876544 4556789999999999985 333344444444
Q ss_pred ccceEEEeecCCCCCCHHHHHH
Q 000099 1149 RCQRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1149 ks~~RLLLTGTPLQNnL~ELwS 1170 (2240)
...+++++||||..+.-...+.
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred ccceEEEEecCCchhHHHHHHH
Confidence 5778999999997444333333
No 147
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.53 E-value=4e-13 Score=175.05 Aligned_cols=118 Identities=22% Similarity=0.204 Sum_probs=105.0
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
..+++..|...|..+...+.+|||||.....++.|.++|...|+.+..+||.++..+|.++++.|+.+.. .+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i---~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF---DVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc---eEEEEcC
Confidence 3567788888888888899999999999999999999999999999999999999999999999986443 3789999
Q ss_pred cccccCCCCCCCeEEEcC-----CCCChhhHHHHhhhhhccCCcceE
Q 000099 1406 AAGRGLNLQSADTVIIYD-----PDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD-----~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
.+++|+|++.+++||++| .+-+...|+|++||++|.. ...|
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G~v 546 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKV 546 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CCEE
Confidence 999999999999999999 5668899999999999974 4444
No 148
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.52 E-value=3e-14 Score=147.44 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=83.4
Q ss_pred HHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000099 1946 VISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSH 2025 (2240)
Q Consensus 1946 vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~s 2025 (2240)
++..+..-..++.--.+++|.+.|++.+.|+||.+ |++||||.+|++||+.++|.+++||.+||+|||+||+.||+++|
T Consensus 8 ~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s 86 (109)
T cd05492 8 IVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRL-IHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADS 86 (109)
T ss_pred HHHHHHhcCcccccccccccccCchhccCCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 33444444455666688999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000099 2026 EVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2026 ev~~dA~~L~~~F~~~~ 2042 (2240)
.+|..|+.|-..-..-|
T Consensus 87 ~~~~~A~~l~~d~~~el 103 (109)
T cd05492 87 EQYDAARWLYRDTCHDL 103 (109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999876655443
No 149
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.52 E-value=3.2e-12 Score=150.33 Aligned_cols=310 Identities=17% Similarity=0.188 Sum_probs=206.3
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC
Q 000099 996 LRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP 1074 (2240)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~P 1074 (2240)
-..|+|.|+|..+-+-++..+.+....|+..-+|.|||-+....|.+.+. ..+.+.|..|. .++..-...|..-|+
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 34789999999999999999999999999999999999988888877765 44678888884 477777777888888
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC-chhHHHHHhhcc--ccc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY--RCQ 1151 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~L--ks~ 1151 (2240)
+..+.+.+|..+..- . ..+||+|-..+.+-. ..||+|||||.+.+-= .+-.+..+++.- ...
T Consensus 170 ~~~I~~Lyg~S~~~f---------r-~plvVaTtHQLlrFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 170 NCDIDLLYGDSDSYF---------R-APLVVATTHQLLRFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEG 234 (441)
T ss_pred cCCeeeEecCCchhc---------c-ccEEEEehHHHHHHH-----hhccEEEEeccccccccCCHHHHHHHHHhhcccC
Confidence 888888777654321 1 345555544444332 2589999999998731 222344444432 234
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH-HHHH
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLR 1230 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP-FmLR 1230 (2240)
..|.|||||-.. +..... +.-+.+ .+-+
T Consensus 235 ~~IylTATp~k~----------------------l~r~~~-----------------------------~g~~~~~klp~ 263 (441)
T COG4098 235 ATIYLTATPTKK----------------------LERKIL-----------------------------KGNLRILKLPA 263 (441)
T ss_pred ceEEEecCChHH----------------------HHHHhh-----------------------------hCCeeEeecch
Confidence 589999999211 111000 000000 0011
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
|.-. +.||- ...+++. .+-+.+
T Consensus 264 RfH~---~pLpv--Pkf~w~~--~~~k~l--------------------------------------------------- 285 (441)
T COG4098 264 RFHG---KPLPV--PKFVWIG--NWNKKL--------------------------------------------------- 285 (441)
T ss_pred hhcC---CCCCC--CceEEec--cHHHHh---------------------------------------------------
Confidence 1110 11221 1222221 000000
Q ss_pred CCCCccccchhhHhhcccHHH-HHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-C-ceEEeecCCCCHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLW-ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-Q-LVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLe-lLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-G-iky~rLDGsTs~eEReeaI 1387 (2240)
.-.|+. .|.++|.+...+|.-+|||.....+++-+...|+.. + .....++... ..|.+.+
T Consensus 286 ---------------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV 348 (441)
T COG4098 286 ---------------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKV 348 (441)
T ss_pred ---------------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHH
Confidence 011222 577888888999999999999999999999999432 2 2234455443 5799999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC--CChhhHHHHhhhhhccCCc--ceEEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD--PNPKNEEQAVARAHRIGQK--REVKVIYM 1452 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p--WNP~~d~QAiGRAhRIGQK--KeV~VyrL 1452 (2240)
+.|+++.-+ +|++|....+|+.++.+|++|+=.-. ++-...+|--||++|--.. .+|..|.+
T Consensus 349 ~~fR~G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 349 EAFRDGKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHcCceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 999976555 89999999999999999999886555 8999999999999996543 44555544
No 150
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.50 E-value=1.8e-13 Score=163.53 Aligned_cols=320 Identities=21% Similarity=0.269 Sum_probs=211.6
Q ss_pred hhhHHhhhhhhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HHhCCCCCeEEEe
Q 000099 979 YSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EFKGNYGPHLIIV 1057 (2240)
Q Consensus 979 y~lah~i~e~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll-e~kg~~GP~LIVV 1057 (2240)
|.+..+|.++...+| .|.|.+.+.-++. +...+--.-||+|||...+..+...+ ......-+.||+.
T Consensus 30 ~~v~raI~kkg~~~p--------tpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 30 YKVLRAIHKKGFNTP--------TPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred HHHHHHHHHhhcCCC--------Cchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 344455666655555 4567777766654 33334445699999988777554433 3222224789999
Q ss_pred chHHH-HH---HHHHHHHHCCCCeEE-EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEeccc
Q 000099 1058 PNAVL-VN---WKSELHKWLPSVSCI-YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDE 1130 (2240)
Q Consensus 1058 P~SLL-~Q---W~~Ef~Kw~PslkVv-vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDE 1130 (2240)
|+.-| .| ...++.++. .+++. .|.|..-+. +. .....+.||||.|+..+..... .|......|||+||
T Consensus 98 ptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~ee-qf---~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEE-QF---ILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDE 172 (529)
T ss_pred CcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHH-HH---HHhccCCCEEEecCceeeeeehheeccccceeeeeehh
Confidence 98754 33 334444443 45555 444443322 21 2234578999999998864321 13344678999999
Q ss_pred ccccCC--chhHHHHHhhccccc-eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000099 1131 AQRMKD--RESVLARDLDRYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (2240)
Q Consensus 1131 AHrLKN--~~SKlskaLk~Lks~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~ 1207 (2240)
++++-. ..-++.+.+.++... ..+++|||- .+.| . .|.. .|
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~l------v------------~fak--------aG--------- 216 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDL------V------------DFAK--------AG--------- 216 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhh------H------------HHHH--------cc---------
Confidence 999854 456778888888644 589999993 1111 1 1111 00
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000099 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ 1287 (2240)
+..|.++| -||+.. +++.
T Consensus 217 ---------------l~~p~lVR---ldvetk------------ise~-------------------------------- 234 (529)
T KOG0337|consen 217 ---------------LVPPVLVR---LDVETK------------ISEL-------------------------------- 234 (529)
T ss_pred ---------------CCCCceEE---eehhhh------------cchh--------------------------------
Confidence 01111111 111110 0000
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc
Q 000099 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (2240)
Q Consensus 1288 ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r 1367 (2240)
.+++ .+.++...|...|..++..... .++.|||+....+++++...|+..
T Consensus 235 -----------lk~~------------------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~ 284 (529)
T KOG0337|consen 235 -----------LKVR------------------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDF 284 (529)
T ss_pred -----------hhhh------------------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhc
Confidence 0000 0112234466777777766543 568999999999999999999999
Q ss_pred CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcce
Q 000099 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (2240)
Q Consensus 1368 Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKe 1446 (2240)
|+....+.|++..+.|..-+.+|+..... +|+.|+++.+|+|++--|+||+||.|-.+..+++|+||+.|.|.+..
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~ 360 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR 360 (529)
T ss_pred CCCccccccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccce
Confidence 99999999999999999999999975555 89999999999999999999999999999999999999999997654
No 151
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.6e-11 Score=160.81 Aligned_cols=420 Identities=15% Similarity=0.211 Sum_probs=235.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~Ps 1075 (2240)
..++-|+.|---|. .|-|.-..||.|||++++..+ ++....+ ..++||+|+.-|. .|...|.+|+ +
T Consensus 82 ~~ydVQliGgl~L~------~G~IaEm~TGEGKTL~a~lp~-~l~al~g--~~VhIvT~ndyLA~RD~e~m~~l~~~l-G 151 (908)
T PRK13107 82 RHFDVQLLGGMVLD------SNRIAEMRTGEGKTLTATLPA-YLNALTG--KGVHVITVNDYLARRDAENNRPLFEFL-G 151 (908)
T ss_pred CcCchHHhcchHhc------CCccccccCCCCchHHHHHHH-HHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 34455888764442 355788999999999876544 3333233 3489999988663 4888888886 6
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHH----hh-----hhccccCcceEecccccccCCchhHHHHHhh
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY----DR-----SKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~k----D~-----s~L~kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
++|.+..+...... .......+|+++|...|-- +. ..+-...+.++||||++.+.-.
T Consensus 152 lsv~~i~~~~~~~~-----r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD--------- 217 (908)
T PRK13107 152 LTVGINVAGLGQQE-----KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID--------- 217 (908)
T ss_pred CeEEEecCCCCHHH-----HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc---------
Confidence 66666655443211 1223467999999876622 21 1122257889999999987532
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCC----hHHHHh--hhcCCcccCCCCCCCChhh-------------
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN----RKAFHD--WFSQPFQKEGPTHNADDDW------------- 1207 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S----~~sF~e--~F~kPf~~~g~~~~~e~d~------------- 1207 (2240)
.+..-|++||.+ ... .++|..++.+...+... .+.|.. .|... .......-.+...
T Consensus 218 --EArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~id-ek~~~v~LTe~G~~~~e~~l~~~~~~ 292 (908)
T PRK13107 218 --EARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSID-EKAKQVHFTERGQEKVENLLIERGML 292 (908)
T ss_pred --cCCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEe-cCCCeeeechHHHHHHHHHHHhCCcc
Confidence 233457888854 322 55665554332211100 000000 00000 0000000000000
Q ss_pred -----HHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchh
Q 000099 1208 -----LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPED 1275 (2240)
Q Consensus 1208 -----l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~ 1275 (2240)
+........++.+...|+.+.+...-.+.. +-+....+| -..| .+.--+.+.+.....+.+....
T Consensus 293 ~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYi--V~dg~V~IV-De~TGRim~grrwsdGLHQaIEaKE~v~I~~e~ 369 (908)
T PRK13107 293 AEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYI--VQDNEVIIV-DEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNEN 369 (908)
T ss_pred cCcccccCchhhHHHHHHHHHHHHHHHHhcCCceE--EECCEEEEE-ECCCCCCCCCCccchHHHHHHHHhcCCCCCCCc
Confidence 000001112333444444443322111111 111111111 1111 2233344444333222222111
Q ss_pred HHhhhhcChhhH--HHHHHH-------HHHHHHHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHH
Q 000099 1276 EKRRVQKNPIYQ--AKVYKT-------LNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQ 1341 (2240)
Q Consensus 1276 e~~~l~~~~~~~--ak~~~s-------L~nilmqLRKICNHP~L~~p~~~~-----ls~d~LirsSGKLelLdrIL~kL~ 1341 (2240)
. .+..- .++ -+.|.. .......|.++-+.+.+..|.... ...........|+..+..-+.++.
T Consensus 370 ~--t~AsI-T~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~ 446 (908)
T PRK13107 370 Q--TLASI-TFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR 446 (908)
T ss_pred e--eeeee-hHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH
Confidence 0 00000 000 000111 111233566665555544443221 111122334578888888888888
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC------
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------ 1415 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa------ 1415 (2240)
+.|..|||||......+.|..+|...|+++..|++.....+|..+.+.|+.+. ++|+|+.+|+|+|+.=
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecCCcCCCcceecCCchHH
Confidence 99999999999999999999999999999999999999999999999998633 8999999999999772
Q ss_pred -------------------------------CCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1416 -------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1416 -------------------------------ADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
-=+||.-..+-|...+.|..||++|-|.......| +++|+.+++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~--lSlED~L~r 596 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY--LSMEDSLMR 596 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE--EEeCcHHHH
Confidence 23789999999999999999999999988776554 344555543
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.49 E-value=3.7e-13 Score=137.10 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=100.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHHHHHHCC-CCeEEEEecchhhHhHHHHHHHhh
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSELHKWLP-SVSCIYYVGAKDQRSRLFSQEVAA 1098 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-QW~~Ef~Kw~P-slkVvvy~GskdeRk~l~~qei~~ 1098 (2240)
+++|.+++|+|||.+++.++..+... ...+++||+||...+. +|...+..|.. .+.+.++.+........ ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc
Confidence 67999999999999999999888764 4567999999988655 45666777765 46666666655443322 2335
Q ss_pred cCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCchhHHH---HHhhccccceEEEeecCC
Q 000099 1099 LKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRESVLA---RDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1099 ~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~SKls---kaLk~Lks~~RLLLTGTP 1160 (2240)
...+|+|+||+.+.+.... +....|++|||||+|.+.+...... .........++++|||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 6789999999988766433 2345799999999999987655443 333345777899999998
No 153
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.48 E-value=1.8e-12 Score=175.68 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=84.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCce---EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGik---y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
....+|||+.....++.+.+.|...++. ++.|+|+++.++|..+++.+ ..+-|||+|+++++||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3468999999999999999999988765 66799999999999887653 224479999999999999999999
Q ss_pred EEcC---------------CCC---ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1420 IIYD---------------PDP---NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1420 IifD---------------~pW---NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|.++ .+. +-..+.||.||++|.+ +-.+|+|++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyt 409 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYS 409 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCC
Confidence 9985 232 3368999999999984 344556655
No 154
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.46 E-value=1.5e-12 Score=172.99 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=218.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Pslk 1077 (2240)
...||-|.++|.-.+. +..+++-..||.||.+..-.... -..|-+|||.|+ +|+.....-+.+ .++.
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~------l~~gitvVISPL~SLm~DQv~~L~~--~~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPAL------LLGGVTVVISPLISLMQDQVTHLSK--KGIP 330 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeecccc------ccCCceEEeccHHHHHHHHHHhhhh--cCcc
Confidence 3689999999986655 78889999999999977633221 123478999995 576666655533 3455
Q ss_pred EEEEecchhh--HhHHHHHHHhhc--CCcEEEEcHHHHHHhhhhc----cccC---cceEecccccccCC-------chh
Q 000099 1078 CIYYVGAKDQ--RSRLFSQEVAAL--KFNVLVTTYEFIMYDRSKL----SKVD---WKYIIIDEAQRMKD-------RES 1139 (2240)
Q Consensus 1078 Vvvy~Gskde--Rk~l~~qei~~~--~fdVVITTYE~L~kD~s~L----~kik---Wd~VIIDEAHrLKN-------~~S 1139 (2240)
...+.+.... +..++ +.+..+ ..+|+-.|+|.+......+ .... ..++||||||.+.. ...
T Consensus 331 a~~L~s~q~~~~~~~i~-q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk 409 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAIL-QKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYK 409 (941)
T ss_pred eeeccccccHHHHHHHH-HHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHH
Confidence 5556555433 33333 345555 6889999999997653221 1122 68999999998753 222
Q ss_pred HHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000099 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (2240)
Q Consensus 1140 KlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~R 1219 (2240)
++......+..--.|+||||-...--.|+...|++..|.+|.+ -|+.+
T Consensus 410 ~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR~-------------------------- 457 (941)
T KOG0351|consen 410 RLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNRP-------------------------- 457 (941)
T ss_pred HHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCCC--------------------------
Confidence 3333333455556899999988788888888888877765432 12211
Q ss_pred HHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
....-|.-..+ . ..+...+.
T Consensus 458 -----------------------NL~yeV~~k~~--~-----------------------------------~~~~~~~~ 477 (941)
T KOG0351|consen 458 -----------------------NLKYEVSPKTD--K-----------------------------------DALLDILE 477 (941)
T ss_pred -----------------------CceEEEEeccC--c-----------------------------------cchHHHHH
Confidence 00011111000 0 00000011
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCC
Q 000099 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs 1379 (2240)
.+ +....+...||||..+..++.+...|...|+....+|.+++
T Consensus 478 ~~-------------------------------------~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~ 520 (941)
T KOG0351|consen 478 ES-------------------------------------KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLP 520 (941)
T ss_pred Hh-------------------------------------hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCC
Confidence 11 11223567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1380 ~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
..+|..+-..|..... .+++.|=|.|-|||-.++..||+|..|-+-.-|.|-.|||+|-|+...+..|+-..
T Consensus 521 ~~~R~~Vq~~w~~~~~---~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 521 PKERETVQKAWMSDKI---RVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHHHhcCCC---eEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999997553 36888999999999999999999999999999999999999999998888777544
No 155
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.46 E-value=1.3e-13 Score=132.41 Aligned_cols=78 Identities=32% Similarity=0.543 Sum_probs=73.8
Q ss_pred HHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhcc
Q 000099 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1362 d~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRI 1441 (2240)
.+|+..++.+..+||.++.++|..+++.|+.++.. +|++|.++++|||++.+++||+||++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36889999999999999999999999999986664 899999999999999999999999999999999999999998
Q ss_pred C
Q 000099 1442 G 1442 (2240)
Q Consensus 1442 G 1442 (2240)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 156
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.44 E-value=3e-12 Score=157.06 Aligned_cols=312 Identities=20% Similarity=0.211 Sum_probs=202.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHH-HHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--C
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQV-MALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--S 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQA-IALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~Kw~P--s 1075 (2240)
+|.|-|.-+|..-+ -++.|-++...|++|||+++ +|-|..++ ...+.+|++||.-.|.| =.++|.+.+. +
T Consensus 216 eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 216 ELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred eecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhccc
Confidence 79999999986432 24677799999999999875 23344443 34578999999876655 4567877664 3
Q ss_pred CeEEEEecchhhHhHHH-HHHHhhcCCcEEEEcHHHHHHhhhh-ccccCcceEecccccccCC--chhHHH---HHhhcc
Q 000099 1076 VSCIYYVGAKDQRSRLF-SQEVAALKFNVLVTTYEFIMYDRSK-LSKVDWKYIIIDEAQRMKD--RESVLA---RDLDRY 1148 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~-~qei~~~~fdVVITTYE~L~kD~s~-L~kikWd~VIIDEAHrLKN--~~SKls---kaLk~L 1148 (2240)
+++.+-.|....+..-- .......+.||+|.||+-+-.-... -.--+...|||||.|.+.. ....+- ..|+.+
T Consensus 290 lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l 369 (830)
T COG1202 290 LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL 369 (830)
T ss_pred ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHh
Confidence 56666677654432210 0012356789999999876322111 1123678999999999975 223322 223333
Q ss_pred -ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 -RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 -ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
.....|.||||- .|+.||..-|+.-+. .|
T Consensus 370 ~~~AQ~i~LSATV--gNp~elA~~l~a~lV-~y----------------------------------------------- 399 (830)
T COG1202 370 FPGAQFIYLSATV--GNPEELAKKLGAKLV-LY----------------------------------------------- 399 (830)
T ss_pred CCCCeEEEEEeec--CChHHHHHHhCCeeE-ee-----------------------------------------------
Confidence 346789999993 555565544331100 00
Q ss_pred HHHhhhhhhccCCC-CceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1228 MLRRRVEDVEGSLP-PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1228 mLRRlKkDVekdLP-~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
..-| +...+.++|.-...
T Consensus 400 ----------~~RPVplErHlvf~~~e~e--------------------------------------------------- 418 (830)
T COG1202 400 ----------DERPVPLERHLVFARNESE--------------------------------------------------- 418 (830)
T ss_pred ----------cCCCCChhHeeeeecCchH---------------------------------------------------
Confidence 0011 11223333321111
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHH----HhcC--CeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL----QRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1380 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL----~atG--hKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~ 1380 (2240)
|..++.+++..- ...| ...|||+..+.-+..|+++|..+|++..-+|++++.
T Consensus 419 ----------------------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y 476 (830)
T COG1202 419 ----------------------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPY 476 (830)
T ss_pred ----------------------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcH
Confidence 111111111110 1123 358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cCCCC-ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDPDP-NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1381 eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD~pW-NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.+|..+-..|.+.+-. .+++|.|.+-|+|+++.. ||| +...| +|..|.|..|||+|.+=...-.||-++.
T Consensus 477 ~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 477 KERKSVERAFAAQELA---AVVTTAALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred HHHHHHHHHHhcCCcc---eEeehhhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 9999999999976665 689999999999999643 433 34455 9999999999999988665555665543
No 157
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.44 E-value=5.3e-12 Score=165.25 Aligned_cols=113 Identities=22% Similarity=0.243 Sum_probs=102.2
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
..+++..|...|..+...+.+|||||.....++.|.++|...|+++..+||.++..+|..+++.|..+.. .+|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i---~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF---DVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc---eEEEEeC
Confidence 3467778888888888899999999999999999999999999999999999999999999999986443 3689999
Q ss_pred cccccCCCCCCCeEEEcCC-----CCChhhHHHHhhhhhcc
Q 000099 1406 AAGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~-----pWNP~~d~QAiGRAhRI 1441 (2240)
.+++|++++.+++||++|. +-++..|+|++||++|-
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 9999999999999999997 46899999999999994
No 158
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1.4e-10 Score=152.76 Aligned_cols=128 Identities=19% Similarity=0.264 Sum_probs=110.5
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
..|+..|...+..+...+..|||||.++...+.|..+|...|+++..|++ +..+|+..|..|....+. ++|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 46889999999888889999999999999999999999999999999997 678999999999865444 8999999
Q ss_pred ccccCCCCCCC--------eEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1407 AGRGLNLQSAD--------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1407 GGeGLNLQaAD--------tVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
+|+|+|+.-.+ +||.++.+-+...|.|++||++|.|....... |++.++.+++
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fvSleD~Lmr 716 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YVSLEDELMR 716 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--EechhHHHHH
Confidence 99999999433 44999999999999999999999998877633 3455666654
No 159
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.43 E-value=5.4e-12 Score=171.57 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC---ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rG---iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
....||||+.....++.+.+.|...+ +.++.++|.++.++|.++++.+. .+-|||||+++++||++.++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-----~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-----GRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-----CceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 45788999999999998855432 23479999999999999999999
Q ss_pred EEcCCC-----------------C-ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1420 IIYDPD-----------------P-NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1420 IifD~p-----------------W-NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|.++.. | +-..+.||.||++|.| +-.+|+|++
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyt 402 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYS 402 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecC
Confidence 998732 2 4568999999999998 444567765
No 160
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2e-10 Score=151.00 Aligned_cols=157 Identities=16% Similarity=0.231 Sum_probs=114.2
Q ss_pred HHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEE
Q 000099 1298 CMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (2240)
Q Consensus 1298 lmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~ 1372 (2240)
...+.++-+.+.+..|..... ..........|+..+..-+..+.+.|.-|||-|.+....+.|...|...|+++.
T Consensus 517 ~~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~ 596 (970)
T PRK12899 517 SREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHT 596 (970)
T ss_pred HHHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcce
Confidence 345666666655544443221 111222334788888888888888999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC--------CeEEEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1373 rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA--------DtVIifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
.|+.... +.-..+|.+- +. .-.+.|+|..+|+|.|+.-. =+||.-..+-|...+.|..||++|-|..
T Consensus 597 vLNak~~-~~Ea~iia~A--G~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdp 671 (970)
T PRK12899 597 VLNAKNH-AQEAEIIAGA--GK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDP 671 (970)
T ss_pred ecccchh-hhHHHHHHhc--CC--CCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCC
Confidence 9988633 2223455432 22 23488999999999997643 3789999999999999999999999998
Q ss_pred ceEEEEEEehhHHHhhh
Q 000099 1445 REVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1445 KeV~VyrLvTVEEkI~s 1461 (2240)
.....| +++++.++.
T Consensus 672 Gss~f~--lSlEDdL~~ 686 (970)
T PRK12899 672 GAAKFF--LSFEDRLMR 686 (970)
T ss_pred CceeEE--EEcchHHHH
Confidence 876554 345555554
No 161
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.39 E-value=4e-11 Score=155.21 Aligned_cols=300 Identities=19% Similarity=0.181 Sum_probs=180.5
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH-HHHHHHHHHHHHCC--CCeEEEEec
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA-VLVNWKSELHKWLP--SVSCIYYVG 1083 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--slkVvvy~G 1083 (2240)
..|+.+.|.|+|.+||+|||..++..|+.++..+ .+.-.++.|+|.. |..--.+.|.+-+. ++.|.-+.|
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTG 200 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTG 200 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecC
Confidence 3567889999999999999999998888887641 1234789999965 44444444444444 688888998
Q ss_pred chhhHhHHHHHHHhhcCCcEEEEcHHHHHH-------hhhhccccCcceEecccccccCCch-----hHHHHHhhcc---
Q 000099 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMY-------DRSKLSKVDWKYIIIDEAQRMKDRE-----SVLARDLDRY--- 1148 (2240)
Q Consensus 1084 skdeRk~l~~qei~~~~fdVVITTYE~L~k-------D~s~L~kikWd~VIIDEAHrLKN~~-----SKlskaLk~L--- 1148 (2240)
....-+ .+ ..+.+|+|||+|..-- +...+. ...+|||||.|-+.... +.+++.++..
T Consensus 201 D~ql~~----te--i~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess 272 (1230)
T KOG0952|consen 201 DTQLTK----TE--IADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS 272 (1230)
T ss_pred cchhhH----HH--HHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh
Confidence 754322 12 4567999999987521 111222 46799999999997643 3444555333
Q ss_pred -ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 -RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 -ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
..-+.++||||- -|+.|+. .||....+...-.|...| +|.
T Consensus 273 qs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~y----------------------------------RPv 313 (1230)
T KOG0952|consen 273 QSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRY----------------------------------RPV 313 (1230)
T ss_pred hhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeecccc----------------------------------ccc
Confidence 234678999993 2344443 344333222222333222 111
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccC--HHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMS--AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS--~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
-|+ ..++-++-. ..+....+ .
T Consensus 314 pL~--------------~~~iG~k~~~~~~~~~~~d-----------------------------------------~-- 336 (1230)
T KOG0952|consen 314 PLT--------------QGFIGIKGKKNRQQKKNID-----------------------------------------E-- 336 (1230)
T ss_pred cee--------------eeEEeeecccchhhhhhHH-----------------------------------------H--
Confidence 110 011111100 00000000 0
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc----Cce-----------
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----QLV----------- 1370 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r----Gik----------- 1370 (2240)
.+.++ +.++...||.|+||+..+...--.+..|..+ |..
T Consensus 337 -------------------------~~~~k-v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~ 390 (1230)
T KOG0952|consen 337 -------------------------VCYDK-VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQ 390 (1230)
T ss_pred -------------------------HHHHH-HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHH
Confidence 01112 2234457899999998877655555555433 222
Q ss_pred --------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhh----------HH
Q 000099 1371 --------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN----------EE 1432 (2240)
Q Consensus 1371 --------y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~----------d~ 1432 (2240)
...-|.++...+|.-+-+.|..+.-+ +|+||...+.|+||++--++|-=..-|++.. .+
T Consensus 391 l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVl 467 (1230)
T KOG0952|consen 391 LKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVL 467 (1230)
T ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHH
Confidence 12235567778888888889865444 6999999999999997666665555566654 68
Q ss_pred HHhhhhhccCCcce
Q 000099 1433 QAVARAHRIGQKRE 1446 (2240)
Q Consensus 1433 QAiGRAhRIGQKKe 1446 (2240)
|-.|||+|..=.+.
T Consensus 468 QifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 468 QIFGRAGRPQFDSS 481 (1230)
T ss_pred HHHhccCCCCCCCC
Confidence 99999999865444
No 162
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.38 E-value=4.1e-11 Score=143.33 Aligned_cols=322 Identities=16% Similarity=0.149 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEE
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy 1081 (2240)
+.|..++.-++. .+....++++||.||++..-... |+. .|-++||.|.- |+....+-+.+.--....+--
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 578889887775 45567999999999997764332 222 23678888865 566666666654211111111
Q ss_pred ecchhhHhHHHHHH-HhhcCCcEEEEcHHHHHHh-----hhhc-cccCcceEecccccccCC------chhHHHHHhhc-
Q 000099 1082 VGAKDQRSRLFSQE-VAALKFNVLVTTYEFIMYD-----RSKL-SKVDWKYIIIDEAQRMKD------RESVLARDLDR- 1147 (2240)
Q Consensus 1082 ~GskdeRk~l~~qe-i~~~~fdVVITTYE~L~kD-----~s~L-~kikWd~VIIDEAHrLKN------~~SKlskaLk~- 1147 (2240)
.-+..+|.+++... .......++-+|++....+ ...| ......|+||||||.+-- +.....-.|+.
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 22345666665432 2234556888888876543 2223 334578999999998732 22222222332
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhccc-ccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPE-VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~-iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
+..--.++||||--..--+|++..|.+-.|- +|.+ ..|...
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~N------------------------------------- 215 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDN------------------------------------- 215 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhh-------------------------------------
Confidence 2233468899998777778888888766552 2211 112110
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
-+|+....+. ...-+.+...-.+++..
T Consensus 216 -------------------------------LFYD~~~K~~----------------------I~D~~~~LaDF~~~~LG 242 (641)
T KOG0352|consen 216 -------------------------------LFYDNHMKSF----------------------ITDCLTVLADFSSSNLG 242 (641)
T ss_pred -------------------------------hhHHHHHHHH----------------------hhhHhHhHHHHHHHhcC
Confidence 0111110000 00000000001111111
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
.|--+ .+.. +.....-||||..++.++.|+-.|..+||....+|.+.+..+|.++
T Consensus 243 ~~~~~----~~~~---------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 243 KHEKA----SQNK---------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred Chhhh----hcCC---------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 11000 0000 0012357999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
-+.|-.++-+ +|+.|-..|.|+|-+++..||+.|++-|..-|.|--||++|-|-..-|+.||-
T Consensus 298 Qe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 298 QEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred HHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 9999876666 68899999999999999999999999999999999999999998888999885
No 163
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.33 E-value=2e-11 Score=131.84 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--CeEE
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--VSCI 1079 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps--lkVv 1079 (2240)
|+|.+++.-+.. +.+.|+..++|+|||..++..+...+... ....+||+||.. ++.+-..++.+++.. +.+.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 799999987774 67789999999999999987776655433 445899999965 778888899999864 6777
Q ss_pred EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCc--hhHHHHHhhcc---ccce
Q 000099 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY---RCQR 1152 (2240)
Q Consensus 1080 vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~--~SKlskaLk~L---ks~~ 1152 (2240)
.++|........ ........+|+|+|++.+...... +.-...++|||||+|.+... .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~--~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQ--REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHH--HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccc--cccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 777755422111 112245789999999999876543 22234899999999999652 22333333333 3456
Q ss_pred EEEeecCCCCCCHH
Q 000099 1153 RLLLTGTPLQNDLK 1166 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ 1166 (2240)
.+++||||- .++.
T Consensus 155 ~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 155 IILLSATLP-SNVE 167 (169)
T ss_dssp EEEEESSST-HHHH
T ss_pred EEEEeeCCC-hhHh
Confidence 999999996 4444
No 164
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.33 E-value=3.5e-12 Score=121.04 Aligned_cols=81 Identities=36% Similarity=0.461 Sum_probs=75.7
Q ss_pred HHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhh
Q 000099 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438 (2240)
Q Consensus 1359 iLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRA 1438 (2240)
.|.++|...++.+..++|.++.++|..+++.|+.++. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 5678888889999999999999999999999997554 5899999999999999999999999999999999999999
Q ss_pred hccC
Q 000099 1439 HRIG 1442 (2240)
Q Consensus 1439 hRIG 1442 (2240)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 165
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.30 E-value=4e-11 Score=134.22 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=109.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh--CCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK--GNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k--g~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-- 1074 (2240)
.+++||.+++..+.. +.+.|++.++|+|||+.++..+...+... .....+|||||.. ++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988876 77899999999999998666554444433 3445789999966 77889998888864
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhccc-
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR- 1149 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk- 1149 (2240)
++.+..++|........ .......+|+|+|.+.+.... ..+.-..+++|||||+|.+.+.. ..+...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 56777788766543322 122357899999998876532 12223467899999999986543 12223333444
Q ss_pred cceEEEeecCCC
Q 000099 1150 CQRRLLLTGTPL 1161 (2240)
Q Consensus 1150 s~~RLLLTGTPL 1161 (2240)
....+++||||-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 456899999985
No 166
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.29 E-value=7.1e-10 Score=147.33 Aligned_cols=327 Identities=17% Similarity=0.131 Sum_probs=190.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHH-HHHHHHHHHHHCCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAV-LVNWKSELHKWLPSV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~Psl 1076 (2240)
-..+++|..++++.......+..++|..+||.|||..++.+..++... .....+++.|.|..+ +..-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 356899999999999877766578999999999999999888888765 335567888889775 555677788777554
Q ss_pred eEEEE--ecchhhHhHHHHHH-----------HhhcCCcEEEEcHHHHHHh------hhhccccCcceEecccccccCCc
Q 000099 1077 SCIYY--VGAKDQRSRLFSQE-----------VAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKDR 1137 (2240)
Q Consensus 1077 kVvvy--~GskdeRk~l~~qe-----------i~~~~fdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrLKN~ 1137 (2240)
.+... +|.....-...... ....-+.+.+++...+... ...+..+-..+||+||+|-+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 44333 55443321111100 0011122222222222211 01133345678999999998654
Q ss_pred -hhHH-HHHhhcc--ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHH
Q 000099 1138 -ESVL-ARDLDRY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213 (2240)
Q Consensus 1138 -~SKl-skaLk~L--ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~ 1213 (2240)
.... ...+..+ .....|++|||+ | ..|.+.+...+...+.
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATl----------------P------~~~~~~l~~~~~~~~~-------------- 397 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATL----------------P------PFLKEKLKKALGKGRE-------------- 397 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCC----------------C------HHHHHHHHHHHhcccc--------------
Confidence 2222 2222233 245689999996 1 1111111100000000
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHH
Q 000099 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293 (2240)
Q Consensus 1214 ~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~s 1293 (2240)
.+ ...+ .|+
T Consensus 398 ---------------------~~---~~~~-----~~~------------------------------------------ 406 (733)
T COG1203 398 ---------------------VV---ENAK-----FCP------------------------------------------ 406 (733)
T ss_pred ---------------------ee---cccc-----ccc------------------------------------------
Confidence 00 0000 000
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEe
Q 000099 1294 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (2240)
Q Consensus 1294 L~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~r 1373 (2240)
.++.+.+......+... ... ..+..++..-...+.+|+|-|+.+..+..+.+.|+..+.+++.
T Consensus 407 ----------~~~e~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 407 ----------KEDEPGLKRKERVDVED------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred ----------cccccccccccchhhhh------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 00000000000000000 000 1112222333457899999999999999999999999888999
Q ss_pred ecCCCCHHHHHHHHHHHhcC-CCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccC--CcceEEEE
Q 000099 1374 IDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKREVKVI 1450 (2240)
Q Consensus 1374 LDGsTs~eEReeaIk~FNs~-Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIG--QKKeV~Vy 1450 (2240)
||+..+..+|.+.++.+..- ..+-..|+|+|.+...|||+. .|.+|- -.--....+||.||++|-| ....+.|+
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 99999999999988865531 111224799999999999987 666663 2223566889999999999 45556665
Q ss_pred EE
Q 000099 1451 YM 1452 (2240)
Q Consensus 1451 rL 1452 (2240)
..
T Consensus 547 ~~ 548 (733)
T COG1203 547 ND 548 (733)
T ss_pred ec
Confidence 44
No 167
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.27 E-value=1.9e-10 Score=135.55 Aligned_cols=313 Identities=18% Similarity=0.149 Sum_probs=215.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Pslk 1077 (2240)
.+.||.|+++++-... +...+|...+|-||++..-...+ . ..|-.|||||. +|+......+....-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal--~----adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPAL--C----ADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHH--h----cCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3799999999988776 77889999999999976543321 1 24678999996 577777777776643333
Q ss_pred EEEEecchhhHhHHHHHHH--hhcCCcEEEEcHHHHHHhhhh-------ccccCcceEecccccccCC------chhHHH
Q 000099 1078 CIYYVGAKDQRSRLFSQEV--AALKFNVLVTTYEFIMYDRSK-------LSKVDWKYIIIDEAQRMKD------RESVLA 1142 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei--~~~~fdVVITTYE~L~kD~s~-------L~kikWd~VIIDEAHrLKN------~~SKls 1142 (2240)
.+--..++.+.++. ...+ ....|.++..|++.+.+.... |....|.+|.|||.|.+.. +..+..
T Consensus 163 ~lnansske~~k~v-~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l 241 (695)
T KOG0353|consen 163 MLNANSSKEEAKRV-EAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL 241 (695)
T ss_pred hccCcccHHHHHHH-HHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHH
Confidence 33333334333332 2222 245688999999988765432 3444789999999998742 333444
Q ss_pred HHhh-ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1143 RDLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1143 kaLk-~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
-.|+ .|+..-.|+||||-..+-+.|.-.+|.+-. .-.|..-|+.|-...
T Consensus 242 ~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~nl~y------------------------ 291 (695)
T KOG0353|consen 242 GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRPNLKY------------------------ 291 (695)
T ss_pred HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCCCcee------------------------
Confidence 4444 577778999999998888887766655321 112333333331111
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
.++.-+-+
T Consensus 292 ------------------------ev~qkp~n------------------------------------------------ 299 (695)
T KOG0353|consen 292 ------------------------EVRQKPGN------------------------------------------------ 299 (695)
T ss_pred ------------------------EeeeCCCC------------------------------------------------
Confidence 00000000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHH--HhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCC
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL--~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs 1379 (2240)
--+++..|..-+ .-.|..-||||-...-++-+...|+..||....+|..+.
T Consensus 300 ---------------------------~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~le 352 (695)
T KOG0353|consen 300 ---------------------------EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLE 352 (695)
T ss_pred ---------------------------hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccC
Confidence 000111111111 113667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHH--------------------------
Q 000099 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ-------------------------- 1433 (2240)
Q Consensus 1380 ~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~Q-------------------------- 1433 (2240)
+++|..+-..|-.+... +++.|-+.|.|||-+++..||+-..+-+...|.|
T Consensus 353 p~dks~~hq~w~a~eiq---vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqini 429 (695)
T KOG0353|consen 353 PEDKSGAHQGWIAGEIQ---VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINI 429 (695)
T ss_pred ccccccccccccccceE---EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeeh
Confidence 99998888888764443 5788899999999999999999999999999999
Q ss_pred -----------------HhhhhhccCCcceEEEEEEeh
Q 000099 1434 -----------------AVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1434 -----------------AiGRAhRIGQKKeV~VyrLvT 1454 (2240)
--||++|-|++-+|.+||-.+
T Consensus 430 levctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 430 LEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 458888999998887776544
No 168
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=1e-08 Score=132.57 Aligned_cols=416 Identities=16% Similarity=0.134 Sum_probs=228.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kw~ 1073 (2240)
|...++-|+.|..-|+. |.|.-..||-|||+++...+. +.... ...+.||+|+..|.. |...+.+|+
T Consensus 76 g~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~-l~AL~--G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAA-GYALQ--GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHH-HHHHc--CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 43455569998876653 457778999999999865444 33222 346888999987643 666666665
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHH-----HHh----hhhccccCcceEecccccccCCchhHHHHH
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L-----~kD----~s~L~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
++++.+..+......+ ......+|+-+|-.-| +.. ........+.++||||++-+.=
T Consensus 147 -GLsvg~i~~~~~~~er-----r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI-------- 212 (764)
T PRK12326 147 -GLTVGWITEESTPEER-----RAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV-------- 212 (764)
T ss_pred -CCEEEEECCCCCHHHH-----HHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee--------
Confidence 5677666554322211 1123567777775433 222 1222334789999999997741
Q ss_pred hhccccceEEEeecCCC-CCCHHHHHHHHhhhcccc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1145 LDRYRCQRRLLLTGTPL-QNDLKELWSLLNLLLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPL-QNnL~ELwSLLnFLlP~i-F~----------S~---~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
. .+..-|++||.+- .+.+..++.+..-|.++. |. +. ....+.|... . .+..
T Consensus 213 -D--eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~-------~----ly~~ 278 (764)
T PRK12326 213 -D--EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGI-------D----LYSE 278 (764)
T ss_pred -c--cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCc-------c----ccCc
Confidence 1 2345678887653 233444444444443321 10 00 0111111100 0 0000
Q ss_pred HHHHHHHHHHHHHHhhHH-HHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH----
Q 000099 1210 TEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK---- 1277 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~---- 1277 (2240)
+.....++.+...|+.. ++.|-+.-|.. +....+|. ..| .+..-+.+.+.....+.+......
T Consensus 279 -~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dgeV~iVD-e~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsI 353 (764)
T PRK12326 279 -EHVGTTLTQVNVALHAHALLQRDVHYIVR---DGKVHLIN-ASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTI 353 (764)
T ss_pred -chhHHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehh
Confidence 00011223333333332 22221111111 11111111 122 233344455544333322221100
Q ss_pred --hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEEEE
Q 000099 1278 --RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVLLF 1350 (2240)
Q Consensus 1278 --~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~atGhKVLIF 1350 (2240)
...+.......+...........|+++-+.+.+..|..... ..........|+..+..-+.++.+.|.-|||.
T Consensus 354 T~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVg 433 (764)
T PRK12326 354 TVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVG 433 (764)
T ss_pred hHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 00000000000001111223446677766655544432211 11112233467777777777888899999999
Q ss_pred ecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC--------------
Q 000099 1351 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA-------------- 1416 (2240)
Q Consensus 1351 SQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA-------------- 1416 (2240)
|......+.|...|...|+++..|+..-. ++-.++|.+- + ....+-|+|..+|+|.|+.-.
T Consensus 434 t~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G--~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~G 508 (764)
T PRK12326 434 THDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--G--KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELG 508 (764)
T ss_pred eCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--C--CCCcEEEEecCCCCccCeecCCCcccchHHHHHcC
Confidence 99999999999999999999999998744 3334555543 2 223488999999999997733
Q ss_pred -CeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhh
Q 000099 1417 -DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462 (2240)
Q Consensus 1417 -DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~ 1462 (2240)
=+||.-..+-|...+.|..||++|-|......+| +++|+.++..
T Consensus 509 GLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~--lSleDdl~~~ 553 (764)
T PRK12326 509 GLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF--VSLEDDVVAA 553 (764)
T ss_pred CcEEEeccCCchHHHHHHHhcccccCCCCCceeEE--EEcchhHHHh
Confidence 3889999999999999999999999998877654 3456666543
No 169
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.19 E-value=1.6e-11 Score=168.49 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000099 1943 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2022 (2240)
Q Consensus 1943 ck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~ 2022 (2240)
|..|+..|-.+ -=+|.|+++.+.++.||||+| |++||||.||..|+..+.|.+.++|+.||+|||+||.+||+
T Consensus 1306 ~e~il~e~~~~------~~awPFlepVn~~~vp~Y~~I-Ik~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~ 1378 (1404)
T KOG1245|consen 1306 CEDILHELVVH------KAAWPFLEPVNPKEVPDYYDI-IKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNE 1378 (1404)
T ss_pred HHHHHHHHHHh------hhcchhhccCChhhcccHHHH-hcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 88888888654 458999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2023 FSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2023 ~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
. |++++....|+++|..++...||.
T Consensus 1379 ~-s~i~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1379 D-SEIGRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred c-hhhhhhcchHHHHHHHHHHhhcCC
Confidence 9 999999999999999999999995
No 170
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.14 E-value=4.4e-09 Score=142.10 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHH-HH---HHH
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKS-EL---HKW 1072 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~-Ef---~Kw 1072 (2240)
+.+.||+|.+.+..+...+.++..+++-.+||+|||+.++..+.+... ...+++|.||+. |..||.. ++ .+.
T Consensus 243 ~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~ 319 (850)
T TIGR01407 243 GLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNEI 319 (850)
T ss_pred CCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 457999999999888888877888888899999999998887665543 345899999976 4677654 43 444
Q ss_pred CC-CCeEEEEecch
Q 000099 1073 LP-SVSCIYYVGAK 1085 (2240)
Q Consensus 1073 ~P-slkVvvy~Gsk 1085 (2240)
++ .+++++.+|..
T Consensus 320 ~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 320 LNFKINAALIKGKS 333 (850)
T ss_pred cCCCceEEEEEcch
Confidence 43 46676666644
No 171
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.13 E-value=8.8e-11 Score=148.77 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
+-.+.+.++++..|.+.+|.+|+++.+.|.++|+|+..|+||.+ |..||.|.-|..||+..+|.+.+.|..|+.|||.|
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~-i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~en 129 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYV-IQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTEN 129 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCccee-ecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 34455789999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHH------HhCCCChhHHhhh
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLK------IAFPDTDFREARS 2056 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k------~~fP~~~f~~a~~ 2056 (2240)
|+.||.++|++|++|+.|.++|....- ...++.++..|+.
T Consensus 130 a~~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~~~~~l~~~~ 175 (629)
T KOG1827|consen 130 ARLYNRPDSLIYKDSGELEKYFISLEDEKKDGELSMESNEELKAGG 175 (629)
T ss_pred HHHhcCcchhhhhhhhhhhcchhhhhccccchhhccccccccccCC
Confidence 999999999999999999999988653 3444444444443
No 172
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=4e-08 Score=129.79 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=114.9
Q ss_pred HHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEe
Q 000099 1299 MELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (2240)
Q Consensus 1299 mqLRKICNHP~L~~p~~~~-----ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~r 1373 (2240)
..|.++-+.+.+..|.... ...........|+..+..-+..+.+.|.-|||-|.+....+.|..+|...|+++-.
T Consensus 399 ~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~V 478 (913)
T PRK13103 399 FEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKV 478 (913)
T ss_pred HHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHH
Confidence 4566666665554443321 11122334457888888888888999999999999999999999999999999988
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC-------------------------------------CC
Q 000099 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ-------------------------------------SA 1416 (2240)
Q Consensus 1374 LDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ-------------------------------------aA 1416 (2240)
|+.... +.-.++|.+ ++.. -.+-|+|..+|+|.|+. +-
T Consensus 479 LNAk~~-~~EA~IIa~--AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GG 553 (913)
T PRK13103 479 LNAKYH-EKEAEIIAQ--AGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGG 553 (913)
T ss_pred hccccc-hhHHHHHHc--CCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCC
Confidence 887643 333445542 2332 34789999999999975 23
Q ss_pred CeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1417 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1417 DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
=+||.-..+-|...+.|..||++|-|.......|. ++++.+++
T Consensus 554 LhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l--SlED~Lmr 596 (913)
T PRK13103 554 LHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL--SLEDSLMR 596 (913)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEE--EcCcHHHH
Confidence 48899999999999999999999999988776553 34555554
No 173
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.07 E-value=5.6e-09 Score=137.05 Aligned_cols=173 Identities=22% Similarity=0.169 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--------CCCeEEEec-hHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--------YGPHLIIVP-NAVLVNWKSELH 1070 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--------~GP~LIVVP-~SLL~QW~~Ef~ 1070 (2240)
.|-+.|-....-.+ ....|.+||.++|.|||-.|+.-|..-+..+.+ ...+..|+| .+|+.-|+..|.
T Consensus 309 sLNrIQS~v~daAl---~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAAL---RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred hhhHHHHHHHHHHh---cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 44455554443333 234567999999999998887766654432221 125678899 458888999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHH---HHhhhhcc-ccCcceEecccccccCC-chhHH----
Q 000099 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI---MYDRSKLS-KVDWKYIIIDEAQRMKD-RESVL---- 1141 (2240)
Q Consensus 1071 Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L---~kD~s~L~-kikWd~VIIDEAHrLKN-~~SKl---- 1141 (2240)
+|+..+.+.+..-+.+.... ......-+|+|||++.. .+...... .--++++||||.|-+-. ....+
T Consensus 386 kRla~~GI~V~ElTgD~~l~----~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIV 461 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLG----KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIV 461 (1674)
T ss_pred hhccccCcEEEEecccccch----hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHH
Confidence 99877655554433332211 11234568999998865 22111111 11367899999999832 33332
Q ss_pred HHHhhcc----ccceEEEeecCCCCCCHHHHHHHHhhhcccccC
Q 000099 1142 ARDLDRY----RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1181 (2240)
Q Consensus 1142 skaLk~L----ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~ 1181 (2240)
.+.+.+. ...+.++||||- -|..|+-++|..-.+++|.
T Consensus 462 aRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf~ 503 (1674)
T KOG0951|consen 462 ARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLFY 503 (1674)
T ss_pred HHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCcccccc
Confidence 3333333 234578999994 3667777655544466654
No 174
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.06 E-value=2.8e-09 Score=121.69 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=86.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC--CeEEEechH-HHHHHHHHH---HHHCC
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG--PHLIIVPNA-VLVNWKSEL---HKWLP 1074 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G--P~LIVVP~S-LL~QW~~Ef---~Kw~P 1074 (2240)
.-+-|.+++...+- +...+.-.-.|+|||.... ++.|-...+..| .+||+|-+. |..|...|+ .++.|
T Consensus 65 psevqhecipqail----gmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 65 PSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred chHhhhhhhhHHhh----cchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC
Confidence 34568888877665 5566777889999996653 333333333333 568889876 556666664 55579
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccC
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLK 1135 (2240)
++++.++.|+-...+.. +.....++|+|.|++.+... ...|.-.+..+.|+|||+.|.
T Consensus 139 ~vkvaVFfGG~~Ikkde---e~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDE---ELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred CceEEEEEcceeccccH---HHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 99999999876544321 23344789999999988643 234555577899999999875
No 175
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.06 E-value=3.9e-08 Score=127.08 Aligned_cols=155 Identities=20% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHHHHHHCCC
Q 000099 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSELHKWLPS 1075 (2240)
Q Consensus 997 ~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW-~~Ef~Kw~Ps 1075 (2240)
...+|-.+|++++..|.. +-..++|.-|-.|||++|=..|+--. ....+++.-.|...|.|. .++|..-|.+
T Consensus 294 ~pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred CCCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhccc
Confidence 346899999999987765 77889999999999999865554322 223467888898777764 5778887766
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEecccccccCCchh-HHHH-Hhhccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQRMKDRES-VLAR-DLDRYR 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHrLKN~~S-Klsk-aLk~Lk 1149 (2240)
+. +++|.... ......+|+|-+.|+... +.+. +..+||+||.|++.+..- -.|. .+..+.
T Consensus 367 vg--LlTGDvqi----------nPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 367 VG--LLTGDVQI----------NPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred cc--eeecceee----------CCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccccccccceeeeeecc
Confidence 65 55665432 235679999999887542 2333 467799999999966322 2333 333443
Q ss_pred c-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000099 1150 C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (2240)
Q Consensus 1150 s-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~k 1192 (2240)
. -..|+||||- .+..+|.+|++.
T Consensus 433 ~HV~~IlLSATV--------------------PN~~EFA~WIGR 456 (1248)
T KOG0947|consen 433 RHVNFILLSATV--------------------PNTLEFADWIGR 456 (1248)
T ss_pred ccceEEEEeccC--------------------CChHHHHHHhhh
Confidence 2 2479999992 234678888864
No 176
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.03 E-value=4.8e-08 Score=121.04 Aligned_cols=102 Identities=26% Similarity=0.305 Sum_probs=93.6
Q ss_pred HHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCC
Q 000099 1338 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417 (2240)
Q Consensus 1338 ~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaAD 1417 (2240)
....+.+.||||-+=...|++-|.+||...|+++..+|.....-+|.++|.+.+.+.-+ +|+.....-+||||+.+.
T Consensus 440 ~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLDiPEVs 516 (663)
T COG0556 440 RKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLDLPEVS 516 (663)
T ss_pred HHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCCCccee
Confidence 33356789999999999999999999999999999999999999999999999986655 799999999999999999
Q ss_pred eEEEcCCCC-----ChhhHHHHhhhhhccC
Q 000099 1418 TVIIYDPDP-----NPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1418 tVIifD~pW-----NP~~d~QAiGRAhRIG 1442 (2240)
.|.|+|.|- +-...+|-||||.|--
T Consensus 517 LVAIlDADKeGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 517 LVAILDADKEGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred EEEEeecCccccccccchHHHHHHHHhhcc
Confidence 999999984 8889999999999954
No 177
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.03 E-value=3.4e-08 Score=129.06 Aligned_cols=129 Identities=25% Similarity=0.365 Sum_probs=93.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-- 1074 (2240)
|..++..|.--+. .+..+.--.|+ .+||+|||.-.+...+|+.. ++ ++++||+|+. |+.|-.+.+.++..
T Consensus 80 G~~~ws~QR~Wak---R~~rg~SFaii-APTGvGKTTfg~~~sl~~a~-kg--kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRVWAK---RLVRGKSFAII-APTGVGKTTFGLLMSLYLAK-KG--KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHHHHH---HHHcCCceEEE-cCCCCchhHHHHHHHHHHHh-cC--CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 5578888986444 44444444455 58999999766555555543 23 6899999987 56777788888863
Q ss_pred ---CCeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccC
Q 000099 1075 ---SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1075 ---slkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLK 1135 (2240)
.+.++ ||+.- .+++.. -..+..++|+|+|||-.++.+..+.|.+.+|++|+||.++-+.
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~-le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEA-LERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred CCcceeee-eccccchHHHHHH-HHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHH
Confidence 33344 88863 333333 3457788999999999999999999999999999999998763
No 178
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=2.6e-07 Score=121.37 Aligned_cols=406 Identities=16% Similarity=0.237 Sum_probs=222.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH----HHHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL----VNWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL----~QW~~Ef~Kw~ 1073 (2240)
|...++-|+-|.--|. .|.|.-..||=|||+++.. .+||....| ..+-||+.+..| ..|...|.+|+
T Consensus 76 G~r~ydVQliGglvLh------~G~IAEMkTGEGKTLvAtL-payLnAL~G--kgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 76 GKRPYDVQIIGGIILD------LGSVAEMKTGEGKTITSIA-PVYLNALTG--KGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCCcCchHHHHHHHHh------cCCeeeecCCCCccHHHHH-HHHHHHhcC--CceEEEecchhhhhhhHHHHHHHHHHh
Confidence 4345555888874432 3557779999999998643 445543333 345566666655 35999999998
Q ss_pred CCCeEEEEe-c-chhhHhHHHHHHHhhcCCcEEEEcHHH-----HHHh----hhhccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVSCIYYV-G-AKDQRSRLFSQEVAALKFNVLVTTYEF-----IMYD----RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 PslkVvvy~-G-skdeRk~l~~qei~~~~fdVVITTYE~-----L~kD----~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
+ +.|.+.. + ....|+. ....+|+-+|..- |+.. ...+-...+.|.||||++.+.=
T Consensus 147 G-LsvG~i~~~~~~~~rr~-------aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILI------ 212 (925)
T PRK12903 147 G-LSVGINKANMDPNLKRE-------AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILI------ 212 (925)
T ss_pred C-CceeeeCCCCChHHHHH-------hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheee------
Confidence 4 4444333 3 2333333 2346788777544 3322 1223345788999999998741
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCC-----------------hHHHHhhhcCCcccCCCCCCCCh
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN-----------------RKAFHDWFSQPFQKEGPTHNADD 1205 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S-----------------~~sF~e~F~kPf~~~g~~~~~e~ 1205 (2240)
. .+..-|++||.+ ... .++|..++-+.+.+-.. .....+.|.. .+
T Consensus 213 ---D--EArTPLIISg~~-~~~-~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i--~n--------- 274 (925)
T PRK12903 213 ---D--EAKTPLIISGGQ-SND-SNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKL--KN--------- 274 (925)
T ss_pred ---c--ccCCcccccCCC-ccc-hHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCC--Cc---------
Confidence 1 123346667643 222 24555444332211100 0011111110 00
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHH-HhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH
Q 000099 1206 DWLETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK 1277 (2240)
Q Consensus 1206 d~l~~Ee~~lii~RLhklLrPFmL-RRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~ 1277 (2240)
+........++.+...|+...+ .|-+.=|. .+....+|. ..| .+..-+.+.+.....+.+.....
T Consensus 275 --Ly~~~n~~l~h~i~~AL~A~~lf~rd~dYiV---~dg~V~IVD-efTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~- 347 (925)
T PRK12903 275 --LYDIENSELVHRIQNALRAHKVMKEDVEYIV---RDGKIELVD-QFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETK- 347 (925)
T ss_pred --ccChhhHHHHHHHHHHHHHHHHHhcCCceEE---ECCEEEEEE-CCCCCCCCCCccchHHHHHHHHHcCCCCCCCce-
Confidence 0011112233445555554432 22222111 111111211 122 22333444443332222221110
Q ss_pred hhhhcChhhH--HHHHHH-------HHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhc
Q 000099 1278 RRVQKNPIYQ--AKVYKT-------LNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRT 1343 (2240)
Q Consensus 1278 ~~l~~~~~~~--ak~~~s-------L~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~at 1343 (2240)
.+..- .++ -+.|.. ....-..+.++-+...+..|..... ..........|+..+..-+.++...
T Consensus 348 -TlAsI-T~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~ 425 (925)
T PRK12903 348 -TLATI-TYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK 425 (925)
T ss_pred -eeeee-hHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc
Confidence 00000 000 000111 1112235666666665554443221 1112233457888888888888889
Q ss_pred CCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH-HHHHHHhcCCCCccEEEEecccccccCCCCCCC-----
Q 000099 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD----- 1417 (2240)
Q Consensus 1344 GhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe-eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaAD----- 1417 (2240)
|..|||.|......+.|..+|...|+++..|+.... +++ .+|. +++. .-.+.|+|..+|+|.|+.-..
T Consensus 426 gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG~--~GaVTIATNMAGRGTDI~Lg~~V~~~ 499 (925)
T PRK12903 426 GQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAGQ--KGAITIATNMAGRGTDIKLSKEVLEL 499 (925)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCCC--CCeEEEecccccCCcCccCchhHHHc
Confidence 999999999999999999999999999999998643 333 3443 3332 235889999999999988544
Q ss_pred ---eEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1418 ---TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1418 ---tVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
+||....+-|...+.|..||++|-|.......| +++++.+++
T Consensus 500 GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~--lSLeD~L~r 544 (925)
T PRK12903 500 GGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF--ISLDDQLFR 544 (925)
T ss_pred CCcEEEecccCchHHHHHHHhcccccCCCCCcceEE--EecchHHHH
Confidence 999999999999999999999999998877654 344555543
No 179
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.02 E-value=2.2e-11 Score=125.31 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=76.7
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
+.++. +.++|++.+ +++||+++++| .+|++..|||||++|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 3 ~~~~~-l~~~i~~~~-----d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~ 75 (103)
T cd05517 3 QILEQ-LLEAVMTAT-----DPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKT-IAQRIQSGYYKSIEDMEKDLDLMV 75 (103)
T ss_pred HHHHH-HHHHHHHhh-----CcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHH-HHHHHCcCCCCCHHHHHHHHHHHH
Confidence 45666 888899998 67999999999 99999999999999999999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
+||+++ .++..|+
T Consensus 76 ~Na~~yN~~~s~i~-----~~A~~l~ 96 (103)
T cd05517 76 KNAKTFNEPGSQVY-----KDANAIK 96 (103)
T ss_pred HHHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8887766
No 180
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.01 E-value=2.6e-10 Score=146.50 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
......+++..|. .|.=.++|+.+..+.+.||||.+ |.+||||++|+.+|+.+.|..+.+|++|+..+|.||+
T Consensus 607 ~~s~~~~il~~l~------~h~~awPf~~Pv~~~e~pdyy~~-I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr 679 (720)
T KOG1472|consen 607 LFSAIQNILDQLQ------NHGDAWPFLKPVNKKEVPDYYDV-IKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCR 679 (720)
T ss_pred hhHHHHhHHhhhh------cCCccCCccCccccccCCcHHHH-hcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhh
Confidence 3334455555554 67778999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
-||+..++.|+.|..|..+|..+|+..++
T Consensus 680 ~yn~~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 680 MYNGSDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred ccCCccchheecccchhhhhcchhhhhhh
Confidence 99999999999999999999999998766
No 181
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.00 E-value=1.1e-08 Score=138.90 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHHH-----hh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLS-----LY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSE 1068 (2240)
Q Consensus 1000 tLRPYQleGLqwLls-----L~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~E 1068 (2240)
..|+||.-...+++. .. ..+.+|++.+-+|+|||++++-+...|.+. .....++|||- ..|-.|-..+
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~ 322 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDE 322 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHH
Confidence 566665554444443 11 234579999999999999997777767664 55556777776 4477888999
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh----hccccCcceEecccccccCCchhHHHHH
Q 000099 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1069 f~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
|..+........-..+.+.-++ .+....-.|+|||.+.|..... .....+.-+||+|||||-- ...+.+.
T Consensus 323 f~~~~~~~~~~~~~~s~~~Lk~----~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~ 396 (962)
T COG0610 323 FQSFGKVAFNDPKAESTSELKE----LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKL 396 (962)
T ss_pred HHHHHHhhhhcccccCHHHHHH----HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHH
Confidence 9998755443332222222222 2333356899999998865542 2345577899999999963 3344444
Q ss_pred hh-ccccceEEEeecCCCCCCHHH
Q 000099 1145 LD-RYRCQRRLLLTGTPLQNDLKE 1167 (2240)
Q Consensus 1145 Lk-~Lks~~RLLLTGTPLQNnL~E 1167 (2240)
++ .|.....+++||||+...-..
T Consensus 397 ~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 397 LKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHHHhccceEEEeeCCcccccccc
Confidence 44 455577899999998655333
No 182
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.98 E-value=1.5e-09 Score=129.95 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=89.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC---ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rG---iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
.-.|.||||....-+|-|+.++..+| |.++.++|+-+..+|.+-|+.|...+-. |||+|+++++|||++..-.|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 35689999999999999999999875 5788899999999999999999987666 99999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhhhccC
Q 000099 1420 IIYDPDPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhRIG 1442 (2240)
|+..+|-.-..|++||||++|.-
T Consensus 581 invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEEecCcccchhhhhhhccchhh
Confidence 99999999999999999998854
No 183
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.94 E-value=7.6e-11 Score=121.96 Aligned_cols=87 Identities=15% Similarity=0.051 Sum_probs=77.7
Q ss_pred cccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000099 1707 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1782 (2240)
Q Consensus 1707 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1782 (2240)
.++. +.++|.+.. +.+|++++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 6 ~l~~-i~~~i~~~k-----d~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~t-I~~kl~~~~Y~s~~ef~~D~~l~f~ 78 (106)
T cd05525 6 VLKE-ICDAIITYK-----DSNGQSLAIPFINLPSKKKNPDYYERITDPVDLST-IEKQILTGYYKTPEAFDSDMLKVFR 78 (106)
T ss_pred HHHH-HHHHHHHhh-----ccCCCcccHhhccCCCcccCCchhhhCCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 4555 777888888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred -------CCCccccCCccccccccc-ccccc
Q 000099 1783 -------SGSWTHDRDEGEDEQVLQ-PKIKR 1805 (2240)
Q Consensus 1783 -------~~Sw~~~~~~~~d~~~~~-~~~~r 1805 (2240)
+||+|+ .++..|+ .+..+
T Consensus 79 Na~~yn~~~S~i~-----~~A~~L~~~f~~~ 104 (106)
T cd05525 79 NAEKYYGRKSPIG-----RDVCRLRKAYYQA 104 (106)
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHHHHHc
Confidence 999999 8888877 44433
No 184
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.90 E-value=1.6e-10 Score=142.60 Aligned_cols=192 Identities=15% Similarity=0.132 Sum_probs=143.7
Q ss_pred CCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000099 1726 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1794 (2240)
Q Consensus 1726 ~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1794 (2240)
.-+|+.++.+| .+||++.||+||.+|+.||||.+ |..+|..|.|.++.++-.||.+ |+||++ .
T Consensus 159 ~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~-i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~-----~ 232 (371)
T COG5076 159 LRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLT-IQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVY-----V 232 (371)
T ss_pred cccccccccccccCCccccCCChheeecchhhHHH-HHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchh-----h
Confidence 56999999999 99999999999999999999999 9999999999999999999997 344333 1
Q ss_pred ccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCc
Q 000099 1795 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1874 (2240)
Q Consensus 1795 d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 1874 (2240)
++..++
T Consensus 233 ~a~~l~-------------------------------------------------------------------------- 238 (371)
T COG5076 233 DAKELE-------------------------------------------------------------------------- 238 (371)
T ss_pred hhHHHH--------------------------------------------------------------------------
Confidence 111111
Q ss_pred ccccCCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhh
Q 000099 1875 KSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1954 (2240)
Q Consensus 1875 ~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kL~~~~ 1954 (2240)
+.+-.+ +..-.....++.. .++. -...+ ....+ .-
T Consensus 239 ~~~~~~----------------------i~~~~~~~~~~~~---------~~~~------~~~~~------~~~~~--i~ 273 (371)
T COG5076 239 KYFLKL----------------------IEEIPEEMLELSI---------KPGR------EEREE------RESVL--IT 273 (371)
T ss_pred HHHHHH----------------------HHhccccchhhcc---------Cccc------ccccc------chhhc--cc
Confidence 000000 0000001011111 1111 01111 00011 11
Q ss_pred ccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHH
Q 000099 1955 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKV 2034 (2240)
Q Consensus 1955 d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L 2034 (2240)
+...+.-.+.|+..|++.+.|+||+. |..++|+.+...++....|..+.+|..|..+|++||..||+.--..+..+..+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEEVPDYYKD-IRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVL 352 (371)
T ss_pred ccccccccccccccCCcccccchhhh-hhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccch
Confidence 33677788999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000099 2035 HDLFFDLLK 2043 (2240)
Q Consensus 2035 ~~~F~~~~k 2043 (2240)
.++|...+.
T Consensus 353 ~~~~~~~~~ 361 (371)
T COG5076 353 EDFVIKKTR 361 (371)
T ss_pred hhhHhhhhh
Confidence 999887654
No 185
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.87 E-value=2.7e-08 Score=125.76 Aligned_cols=245 Identities=16% Similarity=0.237 Sum_probs=138.1
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.|++ ..|-|-..|+++|-|++..... ..|-||.|.-|.||-.++..+|...+- +++.+...|-|-..|-..-
T Consensus 257 lP~i-~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-kGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 257 LPSI-DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-KGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred cccC-cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-cccceeEEEEeccccccch
Confidence 5663 3468999999999999976642 334589999999997777666654432 4555455555666677666
Q ss_pred HHHHHHHC-CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--------hhccc-cCc------ceEecc
Q 000099 1066 KSELHKWL-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSK-VDW------KYIIID 1129 (2240)
Q Consensus 1066 ~~Ef~Kw~-PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--------s~L~k-ikW------d~VIID 1129 (2240)
.+.+.... +.+.|..+ ++-.-.++-..+....+-.|+++||..|+-+. ..|.. +.| .+||+|
T Consensus 335 ERDL~DigA~~I~V~al--nK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHAL--NKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hhchhhcCCCCccceeh--hhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 77776652 34333322 11111111111222345579999999987541 11111 123 589999
Q ss_pred cccccCC-------chhHHHHHhh----ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHH---HHhhhcCCcc
Q 000099 1130 EAQRMKD-------RESVLARDLD----RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA---FHDWFSQPFQ 1195 (2240)
Q Consensus 1130 EAHrLKN-------~~SKlskaLk----~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~s---F~e~F~kPf~ 1195 (2240)
|||+.|| ..++..+++. .+...+.+..|||-.. |-.++..+..-++|+.... |.++ ...++
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eF-i~AvE 487 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEF-IHAVE 487 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHH-HHHHH
Confidence 9999998 2345444444 3456678889999533 3344555555666655433 3332 23334
Q ss_pred cCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHH
Q 000099 1196 KEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263 (2240)
Q Consensus 1196 ~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L 1263 (2240)
+.|........ +...++-..+-|-- .+-.....+-.++|+..-+.+|+..
T Consensus 488 kRGvGAMEIVA-------------MDMK~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a 537 (1300)
T KOG1513|consen 488 KRGVGAMEIVA-------------MDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRA 537 (1300)
T ss_pred hcCCceeeeee-------------hhhhhhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHH
Confidence 44333222111 11112222221110 1233456677899999999999743
No 186
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.87 E-value=4e-08 Score=131.30 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=109.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCC
Q 000099 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPS 1075 (2240)
Q Consensus 997 ~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~Ps 1075 (2240)
.+.+|.++|.+++.-+.. +.+.++|..||.|||+++-..|.+-+.. + .++....|... ..|=.++|..-+..
T Consensus 116 ~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~~-~--qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALRD-G--QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHHc-C--CceEeccchhhhhhhHHHHHHHHhhh
Confidence 467999999999976665 8889999999999999998887766542 2 24788889664 45556777766653
Q ss_pred C--eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhccc
Q 000099 1076 V--SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR 1149 (2240)
Q Consensus 1076 l--kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk 1149 (2240)
+ .+-+++|.... ..+..++|+|-+.|+.-. ....-.....||+||+|.|.... ..+=..+..+.
T Consensus 189 v~~~vGL~TGDv~I----------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDVSI----------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceecceee----------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 3 34555564321 345678888888886541 21222356789999999997633 33334445555
Q ss_pred cc-eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000099 1150 CQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (2240)
Q Consensus 1150 s~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~k 1192 (2240)
.. +.++||||- ++...|.+|+..
T Consensus 259 ~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 259 DHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred CCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 54 689999992 455788888864
No 187
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.85 E-value=1.7e-10 Score=119.62 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=75.7
Q ss_pred cccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000099 1707 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1782 (2240)
Q Consensus 1707 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1782 (2240)
.+.. +.++++... +++||+++++| .+|++..|||||.+|++||||++ |..+|+.|+|.++.|+..|+.+
T Consensus 5 ~~~~-il~~v~~~~-----d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~ 77 (107)
T cd05516 5 KMNK-IVDVVIKYK-----DSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLEDLEKDVMLLCQ 77 (107)
T ss_pred HHHH-HHHHHHhhh-----CcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHH
Confidence 3445 677788887 66899999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccccc
Q 000099 1783 -------SGSWTHDRDEGEDEQVLQPK 1802 (2240)
Q Consensus 1783 -------~~Sw~~~~~~~~d~~~~~~~ 1802 (2240)
+||+|+ .++..|+-.
T Consensus 78 Na~~yN~~~s~i~-----~~a~~l~~~ 99 (107)
T cd05516 78 NAQTFNLEGSLIY-----EDSIVLQSV 99 (107)
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHH
Confidence 999999 888877733
No 188
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.84 E-value=3.2e-10 Score=116.86 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=73.3
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.++|.+++ +.+||+++.+| .+|++..|||||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 8 l~~~i~~~~-----~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05520 8 LYDTIRNAR-----NNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQ-IRTKLKNGEYETLEELEADLNLMFENAKRY 81 (103)
T ss_pred HHHHHHhhc-----CCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 677788888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCcccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQP 1801 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~~ 1801 (2240)
+||+++ .++..|+-
T Consensus 82 N~~~s~i~-----~~A~~L~~ 97 (103)
T cd05520 82 NVPNSRIY-----KDAEKLQK 97 (103)
T ss_pred CCCCCHHH-----HHHHHHHH
Confidence 899999 88877773
No 189
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.83 E-value=5.8e-08 Score=116.85 Aligned_cols=208 Identities=19% Similarity=0.238 Sum_probs=118.4
Q ss_pred eEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhh----HHHHHHHHHHHHHHHHHHcCCCCCCCCCcc---
Q 000099 1244 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY----QAKVYKTLNNRCMELRKTCNHPLLNYPYFS--- 1316 (2240)
Q Consensus 1244 vE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~----~ak~~~sL~nilmqLRKICNHP~L~~p~~~--- 1316 (2240)
.++.+.++|+..|+.+|+.+.......+...-+ ........ .......+...+..|+.+|+||+|..+.+.
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCE--TNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHH--STTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHc--ccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc
Confidence 367888999999999999886543221111100 00000000 012336677788999999999999655432
Q ss_pred ---ccchhhHhhcccHHHHHHHHHHHH-----HhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH-
Q 000099 1317 ---DLSKDFLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI- 1387 (2240)
Q Consensus 1317 ---~ls~d~LirsSGKLelLdrIL~kL-----~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI- 1387 (2240)
......+...||||.+|..+|..+ ...+.++||.|+...++|+||.+|...++.|.|++|..-.++....-
T Consensus 82 ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~ 161 (297)
T PF11496_consen 82 LLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPK 161 (297)
T ss_dssp S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--
T ss_pred cccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCc
Confidence 112456788999999999999999 66778999999999999999999999999999999976554443322
Q ss_pred -----------HHHh-cCCCCccEEEEeccccccc----CCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1388 -----------VDFN-SHDSDCFIFLLSIRAAGRG----LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1388 -----------k~FN-s~Ds~~fVfLLSTrAGGeG----LNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.... .+...+.|+|++++-.... ++-...|.||-||+.+++....-..-|..--.. +.+-|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~Piir 240 (297)
T PF11496_consen 162 NGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIR 240 (297)
T ss_dssp --------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEE
T ss_pred ccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEE
Confidence 0111 1234567778877755442 334457999999999998875544444433222 7888999
Q ss_pred Eeh
Q 000099 1452 MEA 1454 (2240)
Q Consensus 1452 LvT 1454 (2240)
++.
T Consensus 241 Lv~ 243 (297)
T PF11496_consen 241 LVP 243 (297)
T ss_dssp EEE
T ss_pred Eee
Confidence 976
No 190
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.80 E-value=4.1e-10 Score=116.31 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=75.8
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.|...+ +++||+++.+| .+|++..|||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 8 ~~~~i~~~~-----d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 8 LYNAVKNYT-----DGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEK-IRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHhh-----CcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 666788888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc-cccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ-PKIKRK 1806 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~-~~~~rk 1806 (2240)
+||+++ .++..|+ -+.+++
T Consensus 82 N~~~s~i~-----~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIY-----KDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHH
Confidence 999999 8998888 444443
No 191
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.78 E-value=5.6e-10 Score=115.04 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=74.8
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.|++.. +.+||.++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 8 l~~~v~~~~-----d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 8 LFLYVLEYR-----EGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKT-IEHNIRNDKYATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHhh-----ccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 566677777 67999999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQPKIKRK 1806 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~~~~~rk 1806 (2240)
+||+|+ .++..|+-.++.|
T Consensus 82 N~~~s~i~-----~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVY-----EDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHH-----HHHHHHHHHHHhc
Confidence 999999 8887777444433
No 192
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.75 E-value=3.1e-06 Score=115.91 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=66.4
Q ss_pred HHHHHHHHHH-hcCCeEEEEecchhHHHHHHHHHHhcCc--eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000099 1332 ILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1332 lLdrIL~kL~-atGhKVLIFSQ~t~~LDiLed~L~~rGi--ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG 1408 (2240)
.+.+.|..+. ..+.++|||+....++..+.++|..... .+..+.=+++...|.+++++|+..+.. +|+.+....
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCccc
Confidence 4444444443 4667899988888999988888875422 122232223334578999999874443 788899999
Q ss_pred ccCCCCC--CCeEEEcCCCC-Chh
Q 000099 1409 RGLNLQS--ADTVIIYDPDP-NPK 1429 (2240)
Q Consensus 1409 eGLNLQa--ADtVIifD~pW-NP~ 1429 (2240)
+|||+++ +..|||.-.|+ +|.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCC
Confidence 9999997 58999998887 454
No 193
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.74 E-value=6.5e-10 Score=115.45 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=76.4
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
++++|+++. +++||+++++| .||+ .+|+||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 11 l~~~V~~~~-----D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~-Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 11 LFVSVMNHQ-----DEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDI-IKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHhcc-----CCCCCCchHHHHHCCC--cccCchhhhcCCccHHH-HHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 788899999 78999999999 9999 77888999999999999 9999999999999999999998
Q ss_pred --CCCccccCCcccccccccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQPKIKRKR 1807 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~~~~~rkr 1807 (2240)
+||.|+ +|+.+||-.+.++|
T Consensus 83 N~~~S~iy-----~dA~eLq~~f~~~r 104 (110)
T cd05526 83 SRTDSEIY-----EDAVELQQFFIKIR 104 (110)
T ss_pred CcccCHHH-----HHHHHHHHHHHHHH
Confidence 999999 99999996655554
No 194
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.74 E-value=1.1e-06 Score=115.58 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~PslkV 1078 (2240)
.|-+-|..++.-+..........+|...||+|||-..+.+|...+. . .+-+||+||. +++.|-...|...|+ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-~--GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-Q--GKQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-c--CCEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 6778899999988876522344599999999999999999988775 2 2578999995 588888888988887 777
Q ss_pred EEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEeccccccc--CCchhHHH-----HHhh-cc
Q 000099 1079 IYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVLA-----RDLD-RY 1148 (2240)
Q Consensus 1079 vvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrL--KN~~SKls-----kaLk-~L 1148 (2240)
.+++.. +.+|...+. .+..+...|||.|...+. +.--+..+|||||=|.- |-.+..++ ..++ ..
T Consensus 274 ~vlHS~Ls~~er~~~W~-~~~~G~~~vVIGtRSAlF-----~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 274 AVLHSGLSPGERYRVWR-RARRGEARVVIGTRSALF-----LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhcccCChHHHHHHHH-HHhcCCceEEEEechhhc-----CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 777764 334433332 355688899999998774 22335789999999974 33222111 1112 22
Q ss_pred ccceEEEeecCC
Q 000099 1149 RCQRRLLLTGTP 1160 (2240)
Q Consensus 1149 ks~~RLLLTGTP 1160 (2240)
..--.+|=||||
T Consensus 348 ~~~pvvLgSATP 359 (730)
T COG1198 348 ENAPVVLGSATP 359 (730)
T ss_pred hCCCEEEecCCC
Confidence 233478889999
No 195
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.71 E-value=1.7e-06 Score=113.08 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-----CCCeE
Q 000099 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-----PSVSC 1078 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-----PslkV 1078 (2240)
|.+.+.++...+.++...|+-..||+|||+.++..+..... .....++||++|+. |..|+..++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 77888888888888888888899999999998887654443 22346899999976 6678887776554 24555
Q ss_pred EEEecc
Q 000099 1079 IYYVGA 1084 (2240)
Q Consensus 1079 vvy~Gs 1084 (2240)
++.+|.
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 555553
No 196
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.70 E-value=1.8e-07 Score=111.80 Aligned_cols=232 Identities=17% Similarity=0.208 Sum_probs=138.2
Q ss_pred CCCCCcHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 997 RAGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 997 ~ggtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
..|.|-.-|+++|-++...+. .+.+-+|.|.+|.||..++.++|.+.+. +++.+++.|-+...|...-.+.+.
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l-~Gr~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL-RGRKRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-cCCCceEEEECChhhhhHHHHHHH
Confidence 457899999999999997665 3455699999999999999999988775 455445555556778777667776
Q ss_pred HHCC-CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh-------hhcccc-Cc------ceEecccccccC
Q 000099 1071 KWLP-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-------SKLSKV-DW------KYIIIDEAQRMK 1135 (2240)
Q Consensus 1071 Kw~P-slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~-------s~L~ki-kW------d~VIIDEAHrLK 1135 (2240)
..-. .+.+..+..-+.. ........|+++||..|+... ..|..+ +| .+||+||||++|
T Consensus 113 DIG~~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 113 DIGADNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HhCCCcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 5432 2222222111100 112345689999999998762 222211 22 489999999999
Q ss_pred Cchh------HHHHHhhc----cccceEEEeecCCCCCCHHHHHHHHhhhccc------ccCChHHHHhhhcCCcccCCC
Q 000099 1136 DRES------VLARDLDR----YRCQRRLLLTGTPLQNDLKELWSLLNLLLPE------VFDNRKAFHDWFSQPFQKEGP 1199 (2240)
Q Consensus 1136 N~~S------KlskaLk~----Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~------iF~S~~sF~e~F~kPf~~~g~ 1199 (2240)
|..+ +...++.. +...+.+..|||...+- .. |..+..-+ .|.+..+|.+.+.+ .|.
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep-~N---maYm~RLGLWG~gtpf~~~~~f~~a~~~----gGv 257 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP-RN---MAYMSRLGLWGPGTPFPDFDDFLEAMEK----GGV 257 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC-ce---eeeeeeccccCCCCCCCCHHHHHHHHHh----cCc
Confidence 9654 44455443 45567899999986432 21 11112222 34455555544421 111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHH
Q 000099 1200 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1262 (2240)
Q Consensus 1200 ~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~ 1262 (2240)
.. .+++..=. ..+-.+++|... +-.....++.++|++.+..+|+.
T Consensus 258 ~a------------mE~vA~dl-Ka~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 258 GA------------MEMVAMDL-KARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred hH------------HHHHHHHH-Hhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 00 00110000 112234444322 33456678899999999999973
No 197
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.70 E-value=1.3e-05 Score=106.33 Aligned_cols=367 Identities=16% Similarity=0.206 Sum_probs=186.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
|...++-|+-|.--| +.|.|.-..||-|||+++. +.+++.... ...+-||+++.-|. .|...+.+|+
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~-l~ayl~aL~--G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVAT-LPAYLNALT--GKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHH-HHHHHHHhc--CCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 435566688886433 2355778999999999764 444554332 34678888888664 4999999998
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhcCCcEEEEcHH-----HHHHhh----hhccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYE-----FIMYDR----SKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 PslkVvvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE-----~L~kD~----s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
+ +.|.+..+. ...|+. ....+|+-+|-. +|+... .......+.++||||++-+.
T Consensus 145 G-Lsvg~i~~~~~~~err~-------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL------- 209 (870)
T CHL00122 145 G-LTVGLIQEGMSSEERKK-------NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL------- 209 (870)
T ss_pred C-CceeeeCCCCChHHHHH-------hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe-------
Confidence 5 555554432 223322 234577777754 333321 12223468999999999874
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHhh----hcccc-cC----------Ch--HHHHhhhcCCcccCCCCCCCCh
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-FD----------NR--KAFHDWFSQPFQKEGPTHNADD 1205 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-F~----------S~--~sF~e~F~kPf~~~g~~~~~e~ 1205 (2240)
+.. +..-|++||-+-. ..++|...+- |..+. |. +. ..+.+.|.. +.+. .+
T Consensus 210 --IDe--ArTPLiISg~~~~--~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~-i~~l-----y~- 276 (870)
T CHL00122 210 --IDE--ARTPLIISGQSKT--NIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILK-IEDL-----YS- 276 (870)
T ss_pred --ecc--CCCceeccCCCcc--chHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcC-Cccc-----cc-
Confidence 111 2334777775432 2345544433 22221 00 00 011111100 0000 00
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHHh
Q 000099 1206 DWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR 1278 (2240)
Q Consensus 1206 d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~~ 1278 (2240)
... ..++.+...|+...+.. +|+.=-+-+....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 277 -----~~~-~~~~~i~~AL~A~~lf~--~d~dYiV~dgeV~iVD-e~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tl 347 (870)
T CHL00122 277 -----AND-PWIPYILNALKAKELFF--KNVHYIVRNNEIIIVD-EFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETL 347 (870)
T ss_pred -----ccc-HHHHHHHHHHHHHHHHh--cCCcEEEECCEEEEEE-CCCCcCCCCCccchHHHHHHHhhcCCCCCCCceee
Confidence 000 11233334443333221 1211001111111111 122 2334444444443322222111000
Q ss_pred -h-----hhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhhH-hhcccHHHHHHHHHHHHHhcCCeE
Q 000099 1279 -R-----VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHRV 1347 (2240)
Q Consensus 1279 -~-----l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls----~d~L-irsSGKLelLdrIL~kL~atGhKV 1347 (2240)
. .+.......+...+.......|+++-+.+.+..|.....- .+.+ .....|+..+..-+..+...|.-|
T Consensus 348 AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPV 427 (870)
T CHL00122 348 ASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPI 427 (870)
T ss_pred eeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 0 0000000000001111223466666666655444332211 1122 233457777777777788899999
Q ss_pred EEEecchhHHHHHHHHHHhcCceEEeecCCC-CHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC
Q 000099 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTT-SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1414 (2240)
Q Consensus 1348 LIFSQ~t~~LDiLed~L~~rGiky~rLDGsT-s~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ 1414 (2240)
||-|......+.|..+|...|+++..|+... ..+.-.++|.+ ++. .-.+-|+|..+|+|.|+.
T Consensus 428 LIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~--~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 428 LIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGR--KGSITIATNMAGRGTDII 491 (870)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCC--CCcEEEeccccCCCcCee
Confidence 9999999999999999999999999999874 33444556654 222 234789999999997743
No 198
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=1.4e-06 Score=116.14 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=60.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000099 996 LRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
|.-..+||.|.+....+......+.++||-.+||+|||+.+|+..+......+...++++++.++ -+.|-.+|+.+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 33345799999999999999999999999999999999998887665554344445677777765 68888999888
No 199
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.67 E-value=2.1e-06 Score=115.84 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccC
Q 000099 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1411 (2240)
Q Consensus 1332 lLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGL 1411 (2240)
.+...|..+...+.++|||+....++..+.+.|....+.. ..-|... .|.+++++|+..+.. +|+.|....+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4445555556678899999999999999988887665444 4445332 356799999874444 788899999999
Q ss_pred CCC--CCCeEEEcCCCC
Q 000099 1412 NLQ--SADTVIIYDPDP 1426 (2240)
Q Consensus 1412 NLQ--aADtVIifD~pW 1426 (2240)
|++ .+..||+.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 997 356678877664
No 200
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.66 E-value=4.1e-06 Score=110.76 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=79.0
Q ss_pred HhcCCeEEEEecchhHHHHHHHHHHhcCce-EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC--CC
Q 000099 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--AD 1417 (2240)
Q Consensus 1341 ~atGhKVLIFSQ~t~~LDiLed~L~~rGik-y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa--AD 1417 (2240)
...+.++|||+..-..|..+.++|...... .+...|... +..+++.|...... .||+.+....+|||++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 445669999999999999999999877663 445556554 34899999875543 68999999999999997 68
Q ss_pred eEEEcCCCCC-hhh-----------------------------HHHHhhhhhccCCcceEEEE
Q 000099 1418 TVIIYDPDPN-PKN-----------------------------EEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1418 tVIifD~pWN-P~~-----------------------------d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
.|||.-.|+= |.. ..|++||+.|--..+-|.|+
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 9999988874 432 44888888885544445444
No 201
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.65 E-value=2.1e-09 Score=110.59 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=72.4
Q ss_pred ccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000099 1708 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1782 (2240)
Q Consensus 1708 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1782 (2240)
+.. +.++|++.. +.+||+++.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 5 ~~~-i~~~v~~~~-----~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~-I~~kl~~~~Y~s~~~f~~D~~li~~N 77 (103)
T cd05519 5 MLE-IYDAVLNCE-----DETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQ-IKRRIEGRAYKSLEEFLEDFHLMFAN 77 (103)
T ss_pred HHH-HHHHHHHhc-----CcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 445 677788887 66899999999 99999999999999999999999 9999999999999999999999
Q ss_pred ------CCCccccCCccccccccc
Q 000099 1783 ------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 ------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 78 a~~yn~~~s~i~-----~~A~~l~ 96 (103)
T cd05519 78 ARTYNQEGSIVY-----EDAVEME 96 (103)
T ss_pred HHHHCCCCCHHH-----HHHHHHH
Confidence 888888 6665554
No 202
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=4.8e-05 Score=101.99 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=103.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..+..-+..+...|.-|||-|.....-++|...|..+|+++-.|+.... +.-.++|.+= +.. -.+-|+|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~--GaVTIAT 683 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQP--GTVTIAT 683 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCC--CcEEEec
Confidence 3457888888888888999999999999999999999999999999988887643 2223444432 222 2478999
Q ss_pred ccccccCCCC--------CCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
.-+|+|-|+. +-=+||.-..+-|...+.|..||++|-|.......| +++|+.+++
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~--lSLEDdLmr 746 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY--VSLEDNLMR 746 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE--EEcccHHHH
Confidence 9999999977 345889999999999999999999999988776554 345555544
No 203
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.64 E-value=2e-09 Score=112.65 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=71.6
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.+.+.. +++||+++++| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 10 il~~l~~~~-----~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 10 LYDTIRNYK-----SEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLK-IQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHhhc-----ccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHH-HHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556677777 66899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
+||.++ .++..|+
T Consensus 84 N~~~s~~~-----~~A~~L~ 98 (113)
T cd05524 84 YKPDSPEH-----KDACKLW 98 (113)
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 899998 8887777
No 204
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=3.6e-05 Score=102.21 Aligned_cols=365 Identities=15% Similarity=0.194 Sum_probs=189.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
|...++-|+.|.--| +.|.|.-..||-|||+++ .+.+|+....+ ..+-||+++.-|. .|...+.+|+
T Consensus 83 G~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~a-tlpaylnAL~G--kgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVA-TLPSYLNALTG--KGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhh------cCCceeeecCCCChhHHH-HHHHHHHhhcC--CCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 434455588886544 346688899999999976 44555544333 3677888887663 4999999998
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHH-----HHhhh----hccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFI-----MYDRS----KLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 PslkVvvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L-----~kD~s----~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
++.|.+..+. ...|+ .....+|+.+|-..| +.... ......+.++||||++.+.
T Consensus 154 -GLtvg~i~~~~~~~err-------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL------- 218 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERK-------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL------- 218 (939)
T ss_pred -CCeEEEECCCCChHHHH-------HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee-------
Confidence 5666555443 22222 234678888886544 33321 1233578999999999874
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHhhh----cc------cc-cC----------Ch---HHHHhhhcCCcccCC
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL----LP------EV-FD----------NR---KAFHDWFSQPFQKEG 1198 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFL----lP------~i-F~----------S~---~sF~e~F~kPf~~~g 1198 (2240)
+.. +..-|++||.+- ...++|...+-+ .+ +. |. +. ......|.. .+.
T Consensus 219 --IDE--ArTPLIISg~~~--~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i--~nL- 289 (939)
T PRK12902 219 --IDE--ARTPLIISGQVE--RPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGV--SDL- 289 (939)
T ss_pred --ecc--CCCcccccCCCc--cchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCc--hhh-
Confidence 222 223377888653 223444333222 11 10 00 00 000011100 000
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH-hhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcc
Q 000099 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLR-RRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLR 1270 (2240)
Q Consensus 1199 ~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR-RlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ 1270 (2240)
..... ...+.+...|+...+. |-+.=|.. +....+|. ..| .+..-+.+.+.....+.
T Consensus 290 ----------y~~~~-~~~~~i~~AL~A~~lf~~d~dYiV~---dg~V~IVD-e~TGR~m~grrws~GLHQaIEaKE~v~ 354 (939)
T PRK12902 290 ----------FDPQD-PWAHYIFNALKAKELFIKDVNYIVR---NGEVVIVD-EFTGRVMPGRRWSDGLHQAIEAKEGVE 354 (939)
T ss_pred ----------cCccc-HHHHHHHHHHHHHHHHhcCCeEEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHhhcCCC
Confidence 00000 1123333333333222 22111111 11111111 122 23344445554433332
Q ss_pred cCchhHHh------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHH
Q 000099 1271 VDPEDEKR------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIK 1339 (2240)
Q Consensus 1271 ld~~~e~~------~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~k 1339 (2240)
+....... ..+.......+........-..|.++-+.+.+..|..... ..........|+..+..-+.+
T Consensus 355 it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~ 434 (939)
T PRK12902 355 IQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAE 434 (939)
T ss_pred CCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHH
Confidence 22111000 0000000000000111122345677766665544432211 111122335788888888888
Q ss_pred HHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCC-CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC
Q 000099 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1414 (2240)
Q Consensus 1340 L~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGs-Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ 1414 (2240)
+.+.|..|||-|......+.|...|...|+++..|+.. ...+.-.++|.+= +.. --+-|+|..+|+|-|+.
T Consensus 435 ~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~~--GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 435 MHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GRK--GAVTIATNMAGRGTDII 506 (939)
T ss_pred HHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CCC--CcEEEeccCCCCCcCEe
Confidence 88999999999999999999999999999999999986 3334445566542 222 24789999999996643
No 205
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.58 E-value=7.8e-06 Score=106.72 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=104.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--Psl 1076 (2240)
..-.+|.+-+. ....+...+|..++-.|||......|...++ ....+-++.|+|+. ++.|-..++...+ +.+
T Consensus 511 ~Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLR-esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLR-ESDSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHh-hcCCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 34457877664 3344667888999999999998888877665 45667899999966 5666555554433 332
Q ss_pred eEE-EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccc--cCcceEecccccccCCch-hHHHHHhhccc
Q 000099 1077 SCI-YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSK--VDWKYIIIDEAQRMKDRE-SVLARDLDRYR 1149 (2240)
Q Consensus 1077 kVv-vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~k--ikWd~VIIDEAHrLKN~~-SKlskaLk~Lk 1149 (2240)
... ...|.-.. ...+..-+..|+||-++.+-...-. -.+ -+..|||+||.|.+.|.. ..++..+-.+-
T Consensus 586 ~rg~sl~g~ltq-----EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQ-----EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred ccchhhHhhhhH-----HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc
Confidence 221 12221110 0112234778999999987543211 111 156899999999998854 45565555554
Q ss_pred cceEEEeecCCCCCCHHHHHHHHh
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLN 1173 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLn 1173 (2240)
.--.|+|||| .+++..+...++
T Consensus 661 ~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 661 PCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred CCCeeEEecc--cCCHHHHHHHHH
Confidence 4457899999 577777777776
No 206
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.54 E-value=8.3e-09 Score=106.62 Aligned_cols=78 Identities=15% Similarity=0.061 Sum_probs=68.2
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
..+.|.+.. +++|++++.+| .+|++..+||||.+|++||||++ |..+|..|+|.++.++..|+.+
T Consensus 9 i~~~v~~~~-----d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 9 ILKGLRKER-----DENGRLLTLHFEKLPDKAREPEYYQEISNPISLDD-IKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHh-----CcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344566666 56899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 83 n~~~s~i~-----~~A~~l~ 97 (104)
T cd05522 83 NENDSQEY-----KDAVLLE 97 (104)
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 888888 6655543
No 207
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.52 E-value=8.2e-09 Score=107.06 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=69.3
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.+.+.. +.+|++++++| .+|+++.|||||.+|++||||++ |..+|+. |.++.++..|+.+
T Consensus 9 l~~~i~~~~-----~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~t-I~~kl~~--Y~s~~ef~~D~~li~~Na~~y 80 (106)
T cd05521 9 LYDGIYTLK-----EENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNT-VKKRLPH--YTNAQEFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHhhc-----CcCCCCchHhhhcCCccccCccHHHHhcCCCCHHH-HHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 666788887 56799999999 99999999999999999999999 9999998 9999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
+||+++ .++..|.
T Consensus 81 N~~~s~i~-----~~A~~le 95 (106)
T cd05521 81 NTKGSVIY-----KYALILE 95 (106)
T ss_pred cCCCCHHH-----HHHHHHH
Confidence 999999 7776665
No 208
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.49 E-value=1.8e-06 Score=115.42 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=52.4
Q ss_pred cCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHhhcc----ccceEEEeecCCCCC--CHHHHHH
Q 000099 1099 LKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTPLQN--DLKELWS 1170 (2240)
Q Consensus 1099 ~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L----ks~~RLLLTGTPLQN--nL~ELwS 1170 (2240)
....|++.|...+..|. ..+.--.+..|||||||++... +.-.-.+..| +..+..++|+.|-.. ....|-.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~-~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIES-SQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccc-ccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 45679999999998874 3344457889999999999643 3333334444 345689999999763 3455555
Q ss_pred HHhhhcc
Q 000099 1171 LLNLLLP 1177 (2240)
Q Consensus 1171 LLnFLlP 1177 (2240)
++.-|.-
T Consensus 85 vmk~L~i 91 (814)
T TIGR00596 85 KMRNLFL 91 (814)
T ss_pred HHHHhCc
Confidence 5555533
No 209
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.47 E-value=6.6e-05 Score=100.34 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHHHhc----CCCCccEEEEec
Q 000099 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNS----HDSDCFIFLLSI 1404 (2240)
Q Consensus 1330 LelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~FNs----~Ds~~fVfLLST 1404 (2240)
...+.+.|..+...+.++|||+.....++.+.+.|... ++. +.+.|. ..|..+++.|.. ++. .+|+++
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEe
Confidence 33455555555556667899998888899888888643 333 334554 257788887764 222 378888
Q ss_pred ccccccCCCCC--CCeEEEcCCCC
Q 000099 1405 RAAGRGLNLQS--ADTVIIYDPDP 1426 (2240)
Q Consensus 1405 rAGGeGLNLQa--ADtVIifD~pW 1426 (2240)
....+|||+++ +..|||.-.|+
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCC
Confidence 99999999986 79999998886
No 210
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.37 E-value=2.5e-06 Score=108.86 Aligned_cols=140 Identities=23% Similarity=0.238 Sum_probs=92.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~Kw~Pslk 1077 (2240)
.+|-|+|..++.- ..++...++..-|-.|||++|-..|+.-+..+ .+++.-.|-..|+| =.+||..-|.++-
T Consensus 128 F~LDpFQ~~aI~C----idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKC----IDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhhh----hcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 4899999999854 44577889999999999999877776655433 36777778666655 4677776554432
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----hhhccccCcceEecccccccCCchhH--HHHHhhccc-c
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRESV--LARDLDRYR-C 1150 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----~s~L~kikWd~VIIDEAHrLKN~~SK--lskaLk~Lk-s 1150 (2240)
..+|... ...+...+|+|-+.|+.. .+.+..+.| ||+||.|+|+...-. +-..+.-+. .
T Consensus 201 --LMTGDVT----------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 201 --LMTGDVT----------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred --eeeccee----------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecccc
Confidence 2333221 123456889998888654 345555555 999999999864322 222333343 3
Q ss_pred ceEEEeecC
Q 000099 1151 QRRLLLTGT 1159 (2240)
Q Consensus 1151 ~~RLLLTGT 1159 (2240)
-+.++||||
T Consensus 267 vr~VFLSAT 275 (1041)
T KOG0948|consen 267 VRFVFLSAT 275 (1041)
T ss_pred ceEEEEecc
Confidence 456889999
No 211
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.31 E-value=4.4e-05 Score=102.36 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=76.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHh----cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1344 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1344 GhKVLIFSQ~t~~LDiLed~L~~----rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
..-+|||-.-....+.+.+.|.. ..+.++-|+|.++.++..++ |+......+-+++||.++.++|.+.++.+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45689999888888877777776 45778899999999887764 554333435489999999999999999988
Q ss_pred E--------EcCCCC----------ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1420 I--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1420 I--------ifD~pW----------NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
| .||+-- +-+...||-|||+|.+ +=.+|+|.+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLys 385 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYS 385 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecC
Confidence 7 333322 3334567778777755 556677765
No 212
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.29 E-value=3.3e-05 Score=101.71 Aligned_cols=112 Identities=17% Similarity=0.262 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000099 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1409 (2240)
Q Consensus 1330 LelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGe 1409 (2240)
...+..|+..| ..|++|.|||......+++++++.....+++.++|..+..+. +.+. ++.| |+=|.+...
T Consensus 269 ~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W~----~~~V-viYT~~itv 338 (824)
T PF02399_consen 269 TTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESWK----KYDV-VIYTPVITV 338 (824)
T ss_pred hhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cccc----ceeE-EEEeceEEE
Confidence 34444555544 579999999999999999999999999999999998776633 3343 4555 555577788
Q ss_pred cCCCCC--CCeEEEc--CCCCChhh--HHHHhhhhhccCCcceEEEEEE
Q 000099 1410 GLNLQS--ADTVIIY--DPDPNPKN--EEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1410 GLNLQa--ADtVIif--D~pWNP~~--d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
||++-. .|.|+.| .....|.. ..|.+||+..+. ++++.||.-
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 999875 4666666 43344554 699999998887 567777654
No 213
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.28 E-value=5.3e-05 Score=101.50 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEecchhHHHHHHHHHHh----c---CceEEeecCCCCHHHHHHHHHHHhcCCCCccE
Q 000099 1329 KLWILDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQW----R---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399 (2240)
Q Consensus 1329 KLelLdrIL~kL~at--GhKVLIFSQ~t~~LDiLed~L~~----r---Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fV 1399 (2240)
...++..++..+... ...||||-.-...+..+.+.|.. . .+-+..+|+.++..+.+.+ |+.+-.+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 445555555555433 46899999888877777777753 2 2567789999998776654 6666666777
Q ss_pred EEEecccccccCCCCCCCeEE--------EcCCC---------C-ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1400 FLLSIRAAGRGLNLQSADTVI--------IYDPD---------P-NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1400 fLLSTrAGGeGLNLQaADtVI--------ifD~p---------W-NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|++|..+...|.+.++-+|| .||+- | +-..-.||.|||+|.- +=.+|++++
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~ 542 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYT 542 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc---CCeeEEeec
Confidence 999999999999999877775 34443 3 4455679999998854 335566544
No 214
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.27 E-value=1.7e-05 Score=104.50 Aligned_cols=154 Identities=20% Similarity=0.133 Sum_probs=91.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~Kw~P--sl 1076 (2240)
.|+++|.+++.- .....+.|.|.+.+++-|||+++=.+++...- -..+.+|+|.|--.+.+ -..++..+.- ++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l--~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVL--CRRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHH--HHhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 578888888742 22236778899999999999887655543321 22345788888554433 3344444432 35
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccc----cCcceEecccccccCC--chhH----HHHHhh
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKD--RESV----LARDLD 1146 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~k----ikWd~VIIDEAHrLKN--~~SK----lskaLk 1146 (2240)
.+-.|.|.-.. ......-.|.|+|.+.-......|.. ....+|||||-|-+.. .+.- +.+.+.
T Consensus 299 ~ve~y~g~~~p-------~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y 371 (1008)
T KOG0950|consen 299 PVEEYAGRFPP-------EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILY 371 (1008)
T ss_pred cchhhcccCCC-------CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHH
Confidence 55556653211 11223457999999877665444322 2467999999999854 2222 233332
Q ss_pred ccccc--eEEEeecCCCCCC
Q 000099 1147 RYRCQ--RRLLLTGTPLQND 1164 (2240)
Q Consensus 1147 ~Lks~--~RLLLTGTPLQNn 1164 (2240)
.-... ..+++|||-.++.
T Consensus 372 ~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 372 ENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred hccccceeEeeeecccCChH
Confidence 22222 3799999964443
No 215
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.25 E-value=7e-06 Score=110.29 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=106.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHH---------HHHHHCCC--CeEEEEecch--
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKS---------ELHKWLPS--VSCIYYVGAK-- 1085 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-QW~~---------Ef~Kw~Ps--lkVvvy~Gsk-- 1085 (2240)
++..+.++||+|||.+++.+|.+|....+ ...+|||||..-+. -... -|...+.+ +...+|...+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 46788999999999999999999886444 57899999975432 2221 12333333 4445555432
Q ss_pred -hhHhH---HHHHHHhhc-----CCcEEEEcHHHHHHhhh--h----c--cc--cCc-------ceEecccccccCCchh
Q 000099 1086 -DQRSR---LFSQEVAAL-----KFNVLVTTYEFIMYDRS--K----L--SK--VDW-------KYIIIDEAQRMKDRES 1139 (2240)
Q Consensus 1086 -deRk~---l~~qei~~~-----~fdVVITTYE~L~kD~s--~----L--~k--ikW-------d~VIIDEAHrLKN~~S 1139 (2240)
..|.. .+..-.... ..+|+|+|.+.|.++.. . + .. ..| -+||+||.|++.. ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 11111 011111122 57899999999876421 0 1 11 122 3799999999954 34
Q ss_pred HHHHHhhccccceEEEeecCCCC-------C--CHHHHHHHHhhhcccccCChHHHHhhhcCCcccC
Q 000099 1140 VLARDLDRYRCQRRLLLTGTPLQ-------N--DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKE 1197 (2240)
Q Consensus 1140 KlskaLk~Lks~~RLLLTGTPLQ-------N--nL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~ 1197 (2240)
+.+.++..++..+.|..|||=-. | .-.+.++++.-| +..++|...+.+-+...
T Consensus 218 k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~V~ 279 (986)
T PRK15483 218 KFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVDIF 279 (986)
T ss_pred HHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEEEe
Confidence 56788899999999999999532 0 112345554433 55788888887766654
No 216
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.21 E-value=9.7e-07 Score=92.69 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred CccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000099 1984 NILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFS 2024 (2240)
Q Consensus 1984 ~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~ 2024 (2240)
-||||.+|++||.++.|.+.++|++|+.|||+||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 37999999999999999999999999999999999999774
No 217
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.13 E-value=0.00025 Score=91.36 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=72.5
Q ss_pred eEEEEecchhHHHHHHHHHHhc----Cc----eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCC
Q 000099 1346 RVLLFSTMTKLLDILEEYLQWR----QL----VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417 (2240)
Q Consensus 1346 KVLIFSQ~t~~LDiLed~L~~r----Gi----ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaAD 1417 (2240)
-+|||-.-.+..+.+++.|... +- .++-++|+++.++..++ |......++-+++||..+.+.|.+.+.-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5888887777666666666544 21 24678999999886554 5554556778999999999999999988
Q ss_pred eEE--------EcCCCC-------ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1418 TVI--------IYDPDP-------NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1418 tVI--------ifD~pW-------NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|| .|++-- -|..-.||.-|++|.|.+.+..+|||.+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 875 343311 1123345555666666677888888876
No 218
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.07 E-value=2.4e-05 Score=85.43 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=70.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcC
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~ 1100 (2240)
--+|-.-+|.|||..++--+.. +.-...+++||+.|+.++. +|+.+.+.+..+.+ .-.--.+ ...+.
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~--~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~~~-~t~~~~~-------~~~g~ 72 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVR--EAIKRRLRVLVLAPTRVVA---EEMYEALKGLPVRF-HTNARMR-------THFGS 72 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHH--HHHHTT--EEEEESSHHHH---HHHHHHTTTSSEEE-ESTTSS-----------SS
T ss_pred eeEEecCCCCCCcccccHHHHH--HHHHccCeEEEecccHHHH---HHHHHHHhcCCccc-Cceeeec-------cccCC
Confidence 3477788999999887654332 2223456899999999764 45555555554322 2211111 12355
Q ss_pred CcEEEEcHHHHHHhh-hhccccCcceEecccccccCCchhHHHHHh-hccc-c--ceEEEeecCC
Q 000099 1101 FNVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYR-C--QRRLLLTGTP 1160 (2240)
Q Consensus 1101 fdVVITTYE~L~kD~-s~L~kikWd~VIIDEAHrLKN~~SKlskaL-k~Lk-s--~~RLLLTGTP 1160 (2240)
.-|-++||.++.+.. ......+|++||+||||-. ++.+-..+.+ ..+. . ...|++||||
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 678889998876542 3344468999999999985 4555443332 2331 1 3589999999
No 219
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.05 E-value=0.0017 Score=88.08 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=35.9
Q ss_pred CccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1396 ~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
+..+++|+|.+...|+|+. +|.+|.- +-.....+|+.||+.|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~~--~~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIAD--PSSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeeec--cCcHHHHHHHhhcccccccCC
Confidence 4567899999999999975 5555532 224567899999999999764
No 220
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.05 E-value=0.0038 Score=80.27 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=67.3
Q ss_pred eEEEEecchhHHHHHHHHHH----hc-----CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC
Q 000099 1346 RVLLFSTMTKLLDILEEYLQ----WR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1416 (2240)
Q Consensus 1346 KVLIFSQ~t~~LDiLed~L~----~r-----Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA 1416 (2240)
-+|||-.-.+..+..++.|. .. .+-++-|+.+.+.+...++ |...-.+++-++|+|..+.+.|.+.++
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCe
Confidence 46777655544444333333 22 3457778999998876655 443233456789999999999999998
Q ss_pred CeEEEcCCCC--------------------ChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1417 DTVIIYDPDP--------------------NPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1417 DtVIifD~pW--------------------NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.+|| ||-+ +-+.-.||.|||+|.|-.|..++|.
T Consensus 552 ~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923|consen 552 KYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred EEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeec
Confidence 8886 3332 2345679999999988776655554
No 221
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.97 E-value=7e-05 Score=90.44 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
+.||.|++-+..+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999999889999999999999999988876543332222 13677777765 444545555543
No 222
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.97 E-value=7e-05 Score=90.44 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
+.||.|++-+..+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999999889999999999999999988876543332222 13677777765 444545555543
No 223
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.94 E-value=1.1e-06 Score=90.36 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=53.7
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+..+.+| ..++...+||||.+|++||||++ |.++|+.|+|.++.+...|+.+ ++|+++
T Consensus 17 ~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~ 85 (99)
T cd05508 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLST-LEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLT 85 (99)
T ss_pred CcCcchhcCCCChhhCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4568889 88889999999999999999999 9999999999999999999999 788777
No 224
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.94 E-value=1.5e-06 Score=89.15 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=52.4
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
.+.+| .+|++..+||||.+|++||||++ |..+|+.|+|.++.+...|+.+ +||+|+
T Consensus 17 ~s~~F~~pv~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 83 (97)
T cd05505 17 FSWPFREPVTADEAEDYKKVITNPMDLQT-MQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL 83 (97)
T ss_pred CcccccCCCChhhcccHHHHcCCcCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45688 88899999999999999999999 9999999999999999999999 888887
No 225
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.92 E-value=1.9e-05 Score=95.64 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=64.9
Q ss_pred hccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHH
Q 000099 1954 IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARK 2033 (2240)
Q Consensus 1954 ~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~ 2033 (2240)
+++.|+.=. .|.-...|.|--+ |++|.|..|...|+..++|.+ -+|..|+.||+-||++||+++.-.|+.|++
T Consensus 223 ~~p~~~lny-----g~tas~aP~YSm~-Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank 295 (418)
T KOG1828|consen 223 VDPVAYLNY-----GPTASFAPGYSMT-ITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANK 295 (418)
T ss_pred cCchhhhcc-----cchhhhccccccc-ccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHh
Confidence 356665433 3444558999655 999999999999999999999 999999999999999999999999999998
Q ss_pred HHH
Q 000099 2034 VHD 2036 (2240)
Q Consensus 2034 L~~ 2036 (2240)
+.-
T Consensus 296 ~lh 298 (418)
T KOG1828|consen 296 QLH 298 (418)
T ss_pred hhh
Confidence 765
No 226
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.90 E-value=0.00011 Score=95.90 Aligned_cols=166 Identities=18% Similarity=0.154 Sum_probs=103.3
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH--------HHHHH-HHHCCCCeEEEEecc
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN--------WKSEL-HKWLPSVSCIYYVGA 1084 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q--------W~~Ef-~Kw~PslkVvvy~Gs 1084 (2240)
.++...+|+=+-+|||+|||.+.+-+|..|....| .-.++||||.-.+.- -.+.| ..++.+.+.-.|.-.
T Consensus 69 ~~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~ 147 (985)
T COG3587 69 VRIDDKLNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD 147 (985)
T ss_pred ccCCCcceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec
Confidence 34556677778899999999999999988876554 348899999653321 12233 334443333222222
Q ss_pred hhhHhHHHHHHHhhcCCcEEEEcHHHHHHh---hhh---------------------ccccCcceEecccccccCCchhH
Q 000099 1085 KDQRSRLFSQEVAALKFNVLVTTYEFIMYD---RSK---------------------LSKVDWKYIIIDEAQRMKDRESV 1140 (2240)
Q Consensus 1085 kdeRk~l~~qei~~~~fdVVITTYE~L~kD---~s~---------------------L~kikWd~VIIDEAHrLKN~~SK 1140 (2240)
....... ........|+|.+...+.++ ... |... --+|||||-|++... .+
T Consensus 148 ~~~~~~~---~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~k 222 (985)
T COG3587 148 EDIEKFK---FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-DK 222 (985)
T ss_pred hHHHHHh---hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-hH
Confidence 2111111 12345667889988888766 111 1111 137999999999865 78
Q ss_pred HHHHhhccccceEEEeecCCCCCCHHHHHH-HHhhhcccccCChHHHHhhhcCCcc
Q 000099 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWS-LLNLLLPEVFDNRKAFHDWFSQPFQ 1195 (2240)
Q Consensus 1141 lskaLk~Lks~~RLLLTGTPLQNnL~ELwS-LLnFLlP~iF~S~~sF~e~F~kPf~ 1195 (2240)
.+.++..++....|=.+||= .+-|. ++- .+++.+.|...+.+.+.
T Consensus 223 ~~~~i~~l~pl~ilRfgATf-----kd~y~~l~y-----rLDsi~Af~~~LVK~I~ 268 (985)
T COG3587 223 TYGAIKQLNPLLILRFGATF-----KDEYNNLVY-----RLDSIDAFNQKLVKQIR 268 (985)
T ss_pred HHHHHHhhCceEEEEecccc-----hhhhcCeeE-----EeeHHhhhhhhhhhhee
Confidence 89999999998888888882 23332 221 23556777776665544
No 227
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.88 E-value=1.3e-06 Score=92.54 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=56.8
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1799 (2240)
.+.+| .+++...|||||.+|++||||++ |.++|+.|.|.++.++..|+.+ + ||+|+ .++..|
T Consensus 22 ~s~~F~~PVd~~~~pdY~~iIk~PmDL~t-Ik~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~-----~~a~~L 95 (119)
T cd05496 22 DSEPFRQPVDLLKYPDYRDIIDTPMDLGT-VKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIY-----SMTLRL 95 (119)
T ss_pred ccccccCCCChhhcCcHHHHhCCcccHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 46788 88898999999999999999999 9999999999999999999999 3 89998 776665
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 96 ~ 96 (119)
T cd05496 96 S 96 (119)
T ss_pred H
Confidence 5
No 228
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.86 E-value=1.7e-06 Score=90.21 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=56.8
Q ss_pred Cccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccc
Q 000099 1729 SRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (2240)
Q Consensus 1729 ~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d 1795 (2240)
.+..+.+| .+++.. .+||||.+|++||||++ |..+|+.|+|.++.+...|+.+ +||+++ ..
T Consensus 19 ~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~ 92 (107)
T cd05497 19 KHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGT-IKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVV-----LM 92 (107)
T ss_pred hCCcCccccCCCCcccccCCcHHHHHcCcccHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 35668889 666655 69999999999999999 9999999999999999999999 899988 65
Q ss_pred ccccc
Q 000099 1796 EQVLQ 1800 (2240)
Q Consensus 1796 ~~~~~ 1800 (2240)
+..|+
T Consensus 93 A~~l~ 97 (107)
T cd05497 93 AQTLE 97 (107)
T ss_pred HHHHH
Confidence 55554
No 229
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.85 E-value=0.00011 Score=83.02 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH-----HhCCCCCeEEEechH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME-----FKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle-----~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
+|-+.|.+++..++. ... .++..+.|+|||.+...++..++. .....+++||++|+. .+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 377899999977764 444 789999999999888888887742 245667899999965 67777777776
No 230
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.84 E-value=0.00024 Score=94.23 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=85.2
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecch--hhHhHHHHHHHhhcCCcEEE
Q 000099 1029 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLV 1105 (2240)
Q Consensus 1029 GLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy~Gsk--deRk~l~~qei~~~~fdVVI 1105 (2240)
|+|||-..+.+|...+.. .+.+||+||.. ++.++...|...|+...+.+|+... .+|.+.|. .+..+...|||
T Consensus 170 GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~-~~~~G~~~IVi 245 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWL-AVLRGQARVVV 245 (665)
T ss_pred CCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH-HHhCCCCcEEE
Confidence 999999999999887752 34699999965 7899999999999867788888753 44444443 35567789999
Q ss_pred EcHHHHHHhhhhccccCcceEeccccccc--CCchhHH-----HHHhh-ccccceEEEeecCC
Q 000099 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVL-----ARDLD-RYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1106 TTYE~L~kD~s~L~kikWd~VIIDEAHrL--KN~~SKl-----skaLk-~Lks~~RLLLTGTP 1160 (2240)
.|...+. +.--+..+|||||=|.- |...... ...+. .+..-..|+-|+||
T Consensus 246 GtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 246 GTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred EcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 9997652 23336789999998864 3322111 11111 22333467779999
No 231
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=97.82 E-value=4.8e-06 Score=111.22 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=75.0
Q ss_pred hhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHH
Q 000099 1962 VPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 1962 ~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
++.|......+..|+||.+ |++||||.+|.+++..-+|.+..||..||.+++-||..||+..+..-.-|+++-.+-...
T Consensus 1400 s~~f~~~v~~k~~~~yy~k-ik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~ 1478 (1563)
T KOG0008|consen 1400 SWPFHEPVNKKRVPDYYKK-IKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLAN 1478 (1563)
T ss_pred hcccccccchhhchHHHHH-hcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHH
Confidence 5789999999999999999 999999999999999999999999999999999999999999998888888777766655
Q ss_pred HHHh
Q 000099 2042 LKIA 2045 (2240)
Q Consensus 2042 ~k~~ 2045 (2240)
+...
T Consensus 1479 ~~e~ 1482 (1563)
T KOG0008|consen 1479 LLEY 1482 (1563)
T ss_pred HHHH
Confidence 5543
No 232
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.81 E-value=2.7e-06 Score=87.45 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=53.3
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+..+.+| ..+++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|.++
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFST-MRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFY 84 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4556778 88888999999999999999999 9999999999999999999999 888887
No 233
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.78 E-value=0.00094 Score=85.50 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=55.9
Q ss_pred CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC----CCh--------------h
Q 000099 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD----PNP--------------K 1429 (2240)
Q Consensus 1368 Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p----WNP--------------~ 1429 (2240)
++.++-|...++.+-..+ -|.....+++-++++|..+.+.|.+++.-+||-.... +|| +
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 567778888888766554 4665566778899999999999999998888743211 233 2
Q ss_pred hHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1430 NEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1430 ~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.-.||.|||+| +.+-..|++.|
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYT 695 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYT 695 (1042)
T ss_pred cchhhccccCC---CCCcceeeehh
Confidence 33455555555 55667788865
No 234
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0057 Score=81.89 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=97.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..+..-+.++..+|..|||.+.....-+.+...|...|++...|+-.-. .|+.-|-.+- +. .-.+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~--~gaVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQ--PGAVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CC--CCcccccc
Confidence 3456888888888888999999999999999999999999999999988887765 4444343333 22 22467899
Q ss_pred ccccccCCCCC-CC----------eEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1405 RAAGRGLNLQS-AD----------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1405 rAGGeGLNLQa-AD----------tVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
.-+|+|-|+.- .+ +||=-...-+-..+.|-.||++|.|-...-. + +.+.++.+.+
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~-F-~lSleD~L~r 550 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSR-F-YLSLEDDLMR 550 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhh-h-hhhhHHHHHH
Confidence 99999999874 32 5677777788888899999999999443332 2 2344544433
No 235
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.76 E-value=3e-06 Score=86.75 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=56.2
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+++...+|+||.+|++||||.+ |..+|+.|+|.+..+...|+.+ ++|.++ .++..|
T Consensus 16 ~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a~~l 89 (97)
T cd05503 16 EDAWPFLEPVNTKLVPGYRKIIKKPMDFST-IREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVG-----RAGHNM 89 (97)
T ss_pred CCchhhcCCCCccccCCHHHHhCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 355678 88888999999999999999999 9999999999999999999999 788877 666555
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 90 ~ 90 (97)
T cd05503 90 R 90 (97)
T ss_pred H
Confidence 4
No 236
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.74 E-value=3.7e-06 Score=87.18 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
...+.+| ..++...+|+||.+|++||||++ |.++|+.|+|.++.+...|+.+ ++|.++
T Consensus 18 ~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~ 86 (104)
T cd05507 18 HRYASVFLKPVTEDIAPGYHSVVYRPMDLST-IKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVY 86 (104)
T ss_pred CCCCHhhcCCCCccccCCHHHHhCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4457788 88888999999999999999999 9999999999999999999998 667666
No 237
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.70 E-value=4.5e-06 Score=86.07 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=57.3
Q ss_pred Cccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccc
Q 000099 1729 SRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (2240)
Q Consensus 1729 ~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d 1795 (2240)
.+.++.+| .+|+.. .+|+||.+|++||||+. |..+|+.|+|.++.+...|+.+ ++|.++ ..
T Consensus 17 ~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~-I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~-----~~ 90 (102)
T cd05499 17 HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGT-ISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVY-----MM 90 (102)
T ss_pred CCcccchhcCCCCccccCCCCHHHHhcCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 35678899 777766 99999999999999999 9999999999999999999998 788777 55
Q ss_pred ccccc
Q 000099 1796 EQVLQ 1800 (2240)
Q Consensus 1796 ~~~~~ 1800 (2240)
+..|+
T Consensus 91 a~~l~ 95 (102)
T cd05499 91 GHQLE 95 (102)
T ss_pred HHHHH
Confidence 55544
No 238
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.69 E-value=5.4e-06 Score=85.30 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=51.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
..+.+| ..++...+|+||.+|++||||++ |..+|+.|+|.++.+..+|+.+ ++|+++
T Consensus 17 ~~~~~F~~PV~~~~~pdY~~vIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05513 17 DPHGFFAFPVTDFIAPGYSSIIKHPMDFST-MKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYY 84 (98)
T ss_pred CccccccCcCCccccccHHHHHcCccCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 346788 66678889999999999999999 9999999999999999999998 888887
No 239
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=97.67 E-value=5.7e-06 Score=86.99 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=55.8
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C----CCccccCCccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S----GSWTHDRDEGEDE 1796 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~----~Sw~~~~~~~~d~ 1796 (2240)
.+.+| ..|+...+||||.+|++||||++ |..+|+.|+|.++.+...|+.+ + ||||+ .++
T Consensus 20 ~~~~F~~pv~~~~~pdY~~vI~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~-----~~A 93 (112)
T cd05528 20 RFNAFTKPVDEEEVPDYYEIIKQPMDLQT-ILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIR-----SRA 93 (112)
T ss_pred CchhhcCCCCccccCcHHHHHcCCCCHHH-HHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCccccHHH-----HHH
Confidence 34678 88999999999999999999999 9999999999999999999999 4 57888 666
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 94 ~~L~ 97 (112)
T cd05528 94 CELR 97 (112)
T ss_pred HHHH
Confidence 6555
No 240
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00029 Score=91.25 Aligned_cols=150 Identities=21% Similarity=0.185 Sum_probs=83.4
Q ss_pred HHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH---HhCCCCCeEEEechHHH--HH---HHHHHHHHCCCCeE-EEEe
Q 000099 1012 MLSLYNNKLNGILADEMGLGKTVQVMALIAYLME---FKGNYGPHLIIVPNAVL--VN---WKSELHKWLPSVSC-IYYV 1082 (2240)
Q Consensus 1012 LlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle---~kg~~GP~LIVVP~SLL--~Q---W~~Ef~Kw~PslkV-vvy~ 1082 (2240)
+....+.+.-.|+|.+||+|||.|.=-++...-- .....|-+=|--|..+. .. -..|+..+-..+.. +-|.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 3445566777899999999999998665532110 00112223333365542 22 34455553223333 2344
Q ss_pred cchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh-hccccCcceEecccccccCCchhH-----HHHHhh----------
Q 000099 1083 GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDRESV-----LARDLD---------- 1146 (2240)
Q Consensus 1083 GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s-~L~kikWd~VIIDEAHrLKN~~SK-----lskaLk---------- 1146 (2240)
|+. ..+-.|.++|-+.|+++.. .|...++..|||||||.= +-++- +++.+.
T Consensus 344 ~ti------------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 344 GTI------------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred ccc------------CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 432 2345799999999998753 344558999999999963 22221 222221
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhh
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNL 1174 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnF 1174 (2240)
.++.-..|+||||---.++.|---||-.
T Consensus 411 ~~kpLKLIIMSATLRVsDFtenk~LFpi 438 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVSDFTENKRLFPI 438 (1172)
T ss_pred ccCceeEEEEeeeEEecccccCceecCC
Confidence 1123457899999654444433334433
No 241
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.65 E-value=5.1e-06 Score=87.71 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=56.7
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.+...|+.+ ++|.++ ..+..|+
T Consensus 29 ~s~~F~~pvd~~~~pdY~~vI~~PmDL~t-I~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~-----~~A~~l~ 102 (115)
T cd05504 29 DSWPFLRPVSKIEVPDYYDIIKKPMDLGT-IKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVY-----KAGTRLQ 102 (115)
T ss_pred CchhhcCCCCccccccHHHHhcCcccHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 45678 89999999999999999999999 9999999999999999999998 888888 6666655
No 242
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.64 E-value=5.1e-06 Score=85.39 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|++..+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++|+++ ..+..|+
T Consensus 18 ~a~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-----~~a~~l~ 91 (101)
T cd05509 18 SAWPFLEPVDKEEAPDYYDVIKKPMDLST-MEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYY-----KCANKLE 91 (101)
T ss_pred CchhhcCCCChhhcCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 56788 88999999999999999999999 9999999999999999999998 888888 6666655
No 243
>smart00297 BROMO bromo domain.
Probab=97.64 E-value=6.3e-06 Score=84.62 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=60.2
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+...+++.- ..+.++.+| .+|++..+|+||.+|++||||.. |..+|+.|+|.++.++..|+.+
T Consensus 11 ~~~~i~~~~-------~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 11 LLKAVLDKL-------DSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLST-IKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHH-------HhCccchhhccCCChhhccCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445566665 235788999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccc
Q 000099 1783 --SGSWTH 1788 (2240)
Q Consensus 1783 --~~Sw~~ 1788 (2240)
++|+++
T Consensus 83 n~~~s~~~ 90 (107)
T smart00297 83 NGPDSEVY 90 (107)
T ss_pred CCCCCHHH
Confidence 777777
No 244
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.63 E-value=9.4e-06 Score=85.39 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=47.9
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
.+.+| .+|++..+||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 25 ~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~L 75 (112)
T cd05510 25 HSTPFLTKVSKREAPDYYDIIKKPMDLGT-MLKKLKNLQYKSKAEFVDDLNL 75 (112)
T ss_pred cccchhcCCChhhcCCHHHHhcCccCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 46789 99999999999999999999999 9999999999999999999998
No 245
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.62 E-value=7.8e-06 Score=85.40 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=54.4
Q ss_pred cccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000099 1731 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (2240)
Q Consensus 1731 ~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1797 (2240)
..+.+| ..++.. .+||||.+|++||||++ |.++|+.|+|.++.+...|+.+ ++|+++ ..+.
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a~ 93 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLST-IRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVY-----KYCT 93 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 455677 555544 79999999999999999 9999999999999999999999 888888 6665
Q ss_pred ccc
Q 000099 1798 VLQ 1800 (2240)
Q Consensus 1798 ~~~ 1800 (2240)
.|+
T Consensus 94 ~l~ 96 (108)
T cd05495 94 KLA 96 (108)
T ss_pred HHH
Confidence 554
No 246
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.62 E-value=0.00018 Score=90.54 Aligned_cols=108 Identities=26% Similarity=0.327 Sum_probs=84.7
Q ss_pred HhcCCeEEEEecchhHHHHHHHHHHhcCce-EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1341 ~atGhKVLIFSQ~t~~LDiLed~L~~rGik-y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
...|..|+-|+... .-.+...+..+|.. .++|.|+.+.+.|..--..||+++++|.| |++++|.|.|||| +++.|
T Consensus 355 lk~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL-~IrRi 430 (700)
T KOG0953|consen 355 LKPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNL-NIRRI 430 (700)
T ss_pred CCCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeeccccccccc-ceeEE
Confidence 35789999998642 22344455566655 99999999999999999999998888776 7788999999998 48899
Q ss_pred EEcCCC---------CChhhHHHHhhhhhccCCc---ceEEEEEE
Q 000099 1420 IIYDPD---------PNPKNEEQAVARAHRIGQK---REVKVIYM 1452 (2240)
Q Consensus 1420 IifD~p---------WNP~~d~QAiGRAhRIGQK---KeV~VyrL 1452 (2240)
|||+.- -...+..|--|||+|.|.+ ..|+.++.
T Consensus 431 iF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 431 IFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred EEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999875 3556788999999999876 33555543
No 247
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.61 E-value=7.3e-06 Score=84.42 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCccccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000099 1728 NSRRLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1794 (2240)
Q Consensus 1728 ~~r~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1794 (2240)
+++.++.+| ..++ ...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|.++ .
T Consensus 16 ~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~-----~ 89 (102)
T cd05498 16 KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLST-IKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVH-----A 89 (102)
T ss_pred CCccccCcccCcCCccccCCCcHHHHccCCCcHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----H
Confidence 567888999 5444 3469999999999999999 9999999999999999999998 888777 5
Q ss_pred cccccc
Q 000099 1795 DEQVLQ 1800 (2240)
Q Consensus 1795 d~~~~~ 1800 (2240)
.+..|+
T Consensus 90 ~a~~l~ 95 (102)
T cd05498 90 MARKLQ 95 (102)
T ss_pred HHHHHH
Confidence 555444
No 248
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.57 E-value=1.3e-05 Score=84.32 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=52.6
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+.+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|.++
T Consensus 16 ~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~ 83 (112)
T cd05511 16 PDSWPFHTPVNKKKVPDYYKIIKRPMDLQT-IRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYT 83 (112)
T ss_pred CCchhhcCCCChhhcccHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456788 99999999999999999999999 9999999999999999999998 777776
No 249
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.52 E-value=0.00011 Score=99.59 Aligned_cols=98 Identities=13% Similarity=0.261 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
++.|..++.+|... |..| +|.....+.++|||+++ |++|||+.++..++....|.++++|..|+.||+.||+.
T Consensus 567 ~kLl~~~l~~lq~k-D~~g-----if~~pvd~~e~pdy~~i-ik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKK-DSYG-----IFAEPVDPSELPDYIDI-IKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred HHHHHHHHHHhhcc-cccC-----ceeeccChhhcccHHHH-hcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 33455666666422 3333 57777788899999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
||.-+.-.|.+|..+.++--..+..
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~ 664 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRN 664 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHh
Confidence 9999999999999998876544433
No 250
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.47 E-value=4.7e-05 Score=80.49 Aligned_cols=78 Identities=5% Similarity=-0.141 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhhccc--ccCCCccccccCCccChHHHHhhhccCCC-------CCHHHHHHHHHH
Q 000099 1942 RCKNVISKLQRRIEKEGHQIVPLLTDLWKR--IETSGYVSGAGNNILDLRKIDQRVDRLEY-------NGVMELVSDVQF 2012 (2240)
Q Consensus 1942 kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R--~~~PdYY~v~I~~PiDL~~I~qri~~~eY-------~~v~ef~~DvqL 2012 (2240)
.|..+++.|+..+ .+..++.|...+.. ...||||++ |++||||.||..+|...+| ..-.....++..
T Consensus 4 ~~~~~l~~l~~~~---~~~~~~pF~~PVd~~~~~~pdY~~i-IK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T cd05494 4 ALERVLRELKRHR---RNEDAWPFLEPVNPPRRGAPDYRDV-IKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQID 79 (114)
T ss_pred HHHHHHHHHHHhh---hCCCCCCcCCCCCchhcCCCChhhh-cCCCCChHHHHHHHHccccccccccccccccccccccc
Confidence 4667777665444 48899999998766 899999999 9999999999999988644 333333334444
Q ss_pred HHHhhhhhcCC
Q 000099 2013 MLKGAMQFYGF 2023 (2240)
Q Consensus 2013 Mf~Na~~yn~~ 2023 (2240)
+-.||--++..
T Consensus 80 ~~~~~~~~~~~ 90 (114)
T cd05494 80 DEGRRSPSNIY 90 (114)
T ss_pred cccccCccccc
Confidence 44444444444
No 251
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.41 E-value=1.7e-05 Score=82.86 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=55.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhcc---CccccccccccccCC----------CCCccccCCccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~lee---g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
..+.+| .+|+. .+|+||.+|++||||++ |..+|++ |+|+++.+...|+.+ ++|+++ ..+
T Consensus 20 ~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~t-I~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~a 92 (109)
T cd05502 20 ELSLPFHEPVSP-SVPNYYKIIKTPMDLSL-IRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVA-----QAG 92 (109)
T ss_pred CCChhhcCCCCC-CCCCHHHHCCCCccHHH-HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 567888 77777 89999999999999999 9999999 699999999999999 888888 666
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 93 ~~l~ 96 (109)
T cd05502 93 KELE 96 (109)
T ss_pred HHHH
Confidence 6665
No 252
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.38 E-value=2.3e-05 Score=80.36 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=52.4
Q ss_pred cccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1733 TQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1733 ~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
+.+| .+++ +..+|+||++|++||||+. |..+|+.|.|.++.+...|+.+ ++|+++ +.+..|
T Consensus 18 ~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~-----~~a~~l 91 (99)
T cd05506 18 GWVFNAPVDVVALGLPDYFDIIKKPMDLGT-VKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVH-----TMAKEL 91 (99)
T ss_pred CccccCCCCccccCCCCHHHHHcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 5577 4444 4479999999999999999 9999999999999999999998 888888 666555
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 92 ~ 92 (99)
T cd05506 92 L 92 (99)
T ss_pred H
Confidence 4
No 253
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=97.38 E-value=1.1e-05 Score=103.65 Aligned_cols=236 Identities=14% Similarity=0.055 Sum_probs=162.1
Q ss_pred CCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000099 1726 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1794 (2240)
Q Consensus 1726 ~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1794 (2240)
+-+|+.+...| +||+++.+|+||-.|..||.|.. |..++.+|.|.+++....||.+ ++|.++ +
T Consensus 69 d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~-ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~-----~ 142 (629)
T KOG1827|consen 69 DDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQ-IKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIY-----K 142 (629)
T ss_pred cccCcccchhHhhccccccCCCcceeecCcccHHH-HHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhh-----h
Confidence 44899999999 99999999999999999999999 9999999999999999999988 888888 8
Q ss_pred ccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCc
Q 000099 1795 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1874 (2240)
Q Consensus 1795 d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 1874 (2240)
+...|+.-+.+.+.- .+..+ .+..+.....+ .--.++..+.
T Consensus 143 ~s~~l~~~~~~~~~~----~~d~e----~s~~~~~~l~~----------------------------~~l~~~~~~~--- 183 (629)
T KOG1827|consen 143 DSGELEKYFISLEDE----KKDGE----LSMESNEELKA----------------------------GGLHYHELGP--- 183 (629)
T ss_pred hhhhhhcchhhhhcc----ccchh----hcccccccccc----------------------------CCCCcccCCC---
Confidence 887777544442211 00000 01111000000 0001111000
Q ss_pred ccccCCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhh
Q 000099 1875 KSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1954 (2240)
Q Consensus 1875 ~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kL~~~~ 1954 (2240)
.+ -||-.|..+.- | -+++..
T Consensus 184 --------------------------------~~---------i~~~~~~~gd~-----------------v--lv~~~~ 203 (629)
T KOG1827|consen 184 --------------------------------VE---------IDGTKYIVGDY-----------------V--LVQNPA 203 (629)
T ss_pred --------------------------------cc---------ccCcccccCce-----------------e--eecCcc
Confidence 00 00000000000 0 022222
Q ss_pred c-cCCCcc-hhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHH
Q 000099 1955 E-KEGHQI-VPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEAR 2032 (2240)
Q Consensus 1955 d-~~Gr~l-~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~ 2032 (2240)
| ..|+.. +.-|++.|....||.||.+ +.-++=+.-..+++..+||.....|..|+-++|-|++.|+.+..=+|.|+.
T Consensus 204 d~~~p~v~~Ier~w~~~dg~k~~~~~w~-~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~ 282 (629)
T KOG1827|consen 204 DNLKPIVAQIERLWKLPDGEKWPQGCWI-YRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPE 282 (629)
T ss_pred cccCCceeeecccccCcccccccceeEe-eCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcc
Confidence 3 446664 6788999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCChhHHhhhc---ccccCCCCCC
Q 000099 2033 KVHDLFFDLLKIAF--PDTDFREARSA---LSFTGPLSTS 2067 (2240)
Q Consensus 2033 ~L~~~F~~~~k~~f--P~~~f~~a~~a---~~~~~~~~~~ 2067 (2240)
+|.+.+.-..---| -...|.++|.- +=++.+.++.
T Consensus 283 ~ls~~dv~lcesRyn~~~K~f~kirsw~~~~p~E~~~~~~ 322 (629)
T KOG1827|consen 283 NLSEEDVFLCESRYNEQLKKFNKIRSWKAFLPREVPLTLK 322 (629)
T ss_pred cccccceeeEEeeeccchhhhccccCchhcCccccCCccc
Confidence 99876543332212 23467777773 3344444433
No 254
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.37 E-value=2.9e-05 Score=83.51 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=55.7
Q ss_pred CCccccccc-CCCCcc-cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1728 NSRRLTQIV-SPVSPQ-KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1728 ~~r~l~~~f-~lps~~-~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
.++.++.+| .+++.. .+|+||.+|+.||||.+ |.++|+.|+|.++.+...|+.+ ++|-++
T Consensus 40 ~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~ 111 (128)
T cd05529 40 LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLET-IRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIA 111 (128)
T ss_pred ccCcccccccCCCCccccCCcHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 588899999 888888 99999999999999999 9999999999999999999998 777666
No 255
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=97.36 E-value=2.7e-05 Score=76.71 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=50.8
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+..+.+| .+|+...+|+|+.+|+.||||++ |.++|+.|+|.++.++..|+.+ ++|.++
T Consensus 11 ~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~-I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 11 HPISSPFSKPVDPKEYPDYYEIIKNPMDLST-IRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp STTGGGGSSSTHTTTSTTHHHHSSSS--HHH-HHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CCCchhhcCCCChhhCCCHHHHHhhccchhh-hhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3477889 88899999999999999999999 9999999999999999999988 677665
No 256
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.29 E-value=0.00029 Score=84.49 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCC--------CeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh--
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-- 1454 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA--------DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT-- 1454 (2240)
...+.|+++. ..|+|+| +||++||.|++- .+-|.+.++|+....+|..||+||-||.....+..+++
T Consensus 52 ~e~~~F~~g~--k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE--KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC--ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 4567899754 4466665 999999999962 24488999999999999999999999998765555543
Q ss_pred -hHHHhhhhh
Q 000099 1455 -VVDKISSHQ 1463 (2240)
Q Consensus 1455 -VEEkI~s~q 1463 (2240)
.|.++...+
T Consensus 129 ~gE~Rfas~v 138 (278)
T PF13871_consen 129 PGERRFASTV 138 (278)
T ss_pred HHHHHHHHHH
Confidence 444444433
No 257
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.28 E-value=3e-05 Score=77.06 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=53.7
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+....+| .+|+...+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++++++
T Consensus 17 ~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~ 85 (99)
T cd04369 17 RDLSEPFLEPVDPKEAPDYYEVIKNPMDLST-IKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIY 85 (99)
T ss_pred ccccHHHhcCCChhcCCCHHHHHhCcccHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4678889 99999999999999999999999 9999999999999999999998 677776
No 258
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.25 E-value=0.00024 Score=61.17 Aligned_cols=34 Identities=44% Similarity=0.674 Sum_probs=32.0
Q ss_pred CcchhHHHHHHHHHHHhhccccCCCCChHHHHHhc
Q 000099 473 GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507 (2240)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (2240)
-||..|++.||+||+|||-|.+|.. +|++|+.+|
T Consensus 2 ~FT~~Ql~~L~~Qi~ayK~l~~~~p-VP~~l~~~I 35 (37)
T PF08880_consen 2 PFTPAQLQELRAQILAYKYLARNQP-VPPQLQQAI 35 (37)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHhh
Confidence 5999999999999999999999887 999999887
No 259
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.24 E-value=3.8e-05 Score=79.56 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=53.6
Q ss_pred cccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000099 1731 RLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (2240)
Q Consensus 1731 ~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1797 (2240)
..+.+| ..++ +..+|+||.+|++||||+. |..+|+.|.|.++.+...|+.+ ++|+++ ..+.
T Consensus 20 ~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~ 93 (103)
T cd05500 20 KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGT-IERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVS-----QMGK 93 (103)
T ss_pred CCChhhcCCCCcccccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 345677 5544 4589999999999999999 9999999999999999999998 788887 5555
Q ss_pred ccc
Q 000099 1798 VLQ 1800 (2240)
Q Consensus 1798 ~~~ 1800 (2240)
.++
T Consensus 94 ~l~ 96 (103)
T cd05500 94 RLQ 96 (103)
T ss_pred HHH
Confidence 554
No 260
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.18 E-value=7.6e-05 Score=78.34 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=42.6
Q ss_pred CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1737 SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1737 ~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
.-|++.++|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 29 ~~~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~L 73 (109)
T cd05492 29 KRGKATKLPKRRRLIHTHLDVAD-IQEKINSEKYTSLEEFKADALL 73 (109)
T ss_pred cCchhccCCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 55777889999999999999999 9999999999999999999998
No 261
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=97.11 E-value=0.00025 Score=92.93 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=76.5
Q ss_pred CcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000099 1959 HQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLF 2038 (2240)
Q Consensus 1959 r~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F 2038 (2240)
+.=.+.|....++...|+||.+ |+-||||.++..++..+-|.++++|+.|+.+|++||..||.+.+.--..=..+.+-+
T Consensus 301 ~~~s~~~~~kvs~~~a~~y~~i-~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~~~ 379 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKEDAPNYYQI-IKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMNSK 379 (720)
T ss_pred cccccccccCCChhhCcchHHh-hhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhccC
Confidence 3446789999999999999999 999999999999999999999999999999999999999998765444444444444
Q ss_pred HHHHHHhCCCChhH
Q 000099 2039 FDLLKIAFPDTDFR 2052 (2240)
Q Consensus 2039 ~~~~k~~fP~~~f~ 2052 (2240)
--.+-.++|+..+.
T Consensus 380 s~~~~~~~~~~li~ 393 (720)
T KOG1472|consen 380 SLALIKEIPIELIG 393 (720)
T ss_pred cHhHhccchhhhcc
Confidence 44444777776654
No 262
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.11 E-value=0.0054 Score=73.72 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=73.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
+..+++-|+.|+--|. .|-|.-..||=|||+++. +.+++....+ .++=||+-+..|. +|...|.+++
T Consensus 75 g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~-l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAA-LPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHH------TTSEEEESTTSHHHHHHH-HHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHH-HHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 4456667888875442 244888999999999985 4445544333 4677888877664 4888888887
Q ss_pred CCCeEEEEecc-h-hhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---------hhccccCcceEeccccccc
Q 000099 1074 PSVSCIYYVGA-K-DQRSRLFSQEVAALKFNVLVTTYEFIMYDR---------SKLSKVDWKYIIIDEAQRM 1134 (2240)
Q Consensus 1074 PslkVvvy~Gs-k-deRk~l~~qei~~~~fdVVITTYE~L~kD~---------s~L~kikWd~VIIDEAHrL 1134 (2240)
++.+.+.... . ..|+.. ...+|+-+|-..+..|. .......++++||||++-+
T Consensus 146 -Glsv~~~~~~~~~~~r~~~-------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREA-------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -T--EEEEETTTEHHHHHHH-------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred -hhccccCccccCHHHHHHH-------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 4555444433 2 333322 34579988887765441 1112347899999999976
No 263
>PRK10536 hypothetical protein; Provisional
Probab=97.00 E-value=0.0015 Score=77.95 Aligned_cols=144 Identities=21% Similarity=0.161 Sum_probs=85.4
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC---e
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV---S 1077 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl---k 1077 (2240)
+-..|...+.|+.. +...++..+.|+|||+.++++....+.. +....++|+-|.-.. .|...|+|+- +
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 55678888887764 4577888999999999999988865532 344455554444222 2222333321 0
Q ss_pred EEE-----------EecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh
Q 000099 1078 CIY-----------YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1078 Vvv-----------y~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
... +.|... +...+....-.|.|.+..+++ .+. +.-.+||||||+++.- ......|.
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~-----~~~~~~~~~~~Iei~~l~ymR-Grt----l~~~~vIvDEaqn~~~--~~~k~~lt 198 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF-----MQYCLRPEIGKVEIAPFAYMR-GRT----FENAVVILDEAQNVTA--AQMKMFLT 198 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH-----HHHHHHhccCcEEEecHHHhc-CCc----ccCCEEEEechhcCCH--HHHHHHHh
Confidence 000 001100 000011123346666666654 222 2458999999999853 55556667
Q ss_pred ccccceEEEeecCCCCCCH
Q 000099 1147 RYRCQRRLLLTGTPLQNDL 1165 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL 1165 (2240)
++....+++++|-|-|-++
T Consensus 199 R~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 199 RLGENVTVIVNGDITQCDL 217 (262)
T ss_pred hcCCCCEEEEeCChhhccC
Confidence 8888899999999977663
No 264
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=96.91 E-value=0.00021 Score=74.36 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=41.9
Q ss_pred cccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1733 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1733 ~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
+.+| .-| ..+||||.+|++||||++ |..+|..|+|.++.+...|+.+
T Consensus 20 s~~f~~~p--~~~pdY~~iIk~PMDL~t-I~~kL~~~~Y~s~~ef~~D~~L 67 (102)
T cd05501 20 SGFFISKP--YYIRDYCQGIKEPMWLNK-VKERLNERVYHTVEGFVRDMRL 67 (102)
T ss_pred cccccCCC--CCCCchHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 3455 433 599999999999999999 9999999999999999999988
No 265
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.86 E-value=0.0033 Score=72.91 Aligned_cols=144 Identities=26% Similarity=0.307 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC---e
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV---S 1077 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl---k 1077 (2240)
+-.+|...++.|.. ....++....|+|||+.+++..+.++.. +...+++|+-|..-+..+ +- |+|+- +
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~---lG-flpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGED---LG-FLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccc---cc-cCCCCHHHH
Confidence 45689999988773 5567888999999999999999888764 777777777776533221 11 11110 0
Q ss_pred EEEEec----------chhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc
Q 000099 1078 CIYYVG----------AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (2240)
Q Consensus 1078 Vvvy~G----------skdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~ 1147 (2240)
.-.|.. ...... .......|-+.+..+++ .+ .+++.+||||||+++.. ..+...|.+
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~------~~~~~~~Ie~~~~~~iR-Gr----t~~~~~iIvDEaQN~t~--~~~k~ilTR 142 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLE------ELIQNGKIEIEPLAFIR-GR----TFDNAFIIVDEAQNLTP--EELKMILTR 142 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHH------HHHHTTSEEEEEGGGGT-T------B-SEEEEE-SGGG--H--HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhChHhHH------HHhhcCeEEEEehhhhc-Cc----cccceEEEEecccCCCH--HHHHHHHcc
Confidence 000000 000000 01123345555554442 11 13568999999999853 445556778
Q ss_pred cccceEEEeecCCCCCCHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLK 1166 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ 1166 (2240)
+-...+++++|-|.|.++.
T Consensus 143 ~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 143 IGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-TT-EEEEEE--------
T ss_pred cCCCcEEEEecCceeecCC
Confidence 8888999999999877644
No 266
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.60 E-value=0.0085 Score=75.68 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=91.9
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh----cCc----eEEeecCCCCHHHHHHHHHHHhcCCCCc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQL----VYRRIDGTTSLEDRESAIVDFNSHDSDC 1397 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~----rGi----ky~rLDGsTs~eEReeaIk~FNs~Ds~~ 1397 (2240)
.+.|+.-...|+..+...|-|.|-||..+..++++-...+. -+- .+..+.|+...++|.++-.+.-.++-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 34566667778888888999999999999988876544332 121 12346788899999988877654332
Q ss_pred cEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1398 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1398 fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
.-+++|.|..+|||+-..|.||++..|.+...+.|..|||+|-...
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 3689999999999999999999999999999999999999997744
No 267
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.57 E-value=0.0074 Score=74.93 Aligned_cols=91 Identities=24% Similarity=0.201 Sum_probs=55.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH-HHHHHCCCCeEEEEecchhhHhHHHHHHHhhcC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS-ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~-Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~ 1100 (2240)
.|+--..|+|||+.++.++..+.. .......+++|++..+.+... .|..-. ....
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------------------~~~~ 59 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKY-----------------------NPKL 59 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhc-----------------------ccch
Confidence 366778999999999999888721 233456788888776655443 343321 0001
Q ss_pred CcEEEEcHHHHHHhhh--hccccCcceEecccccccCC
Q 000099 1101 FNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1101 fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN 1136 (2240)
....+..+..++.... ......+++|||||||++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1222333333333222 23345799999999999975
No 268
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=96.55 E-value=0.0085 Score=58.27 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000099 808 AMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (2240)
Q Consensus 808 ~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~~~kr~~~~~~~rl~~lk~ 870 (2240)
......|..|+.+.++|.+.+...........++|..||.+.+++..+++++++++||++|++
T Consensus 11 ~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 11 THHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 334456899999999999998888877888899999999999999999999999999999974
No 269
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.33 E-value=0.036 Score=63.70 Aligned_cols=125 Identities=25% Similarity=0.278 Sum_probs=68.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv 1079 (2240)
+|-+-|.+++..++. ....-.+|.-.-|+|||.....++ ..+...+ ..+++++|+..... ++.+-+
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~-~~~~~~g--~~v~~~apT~~Aa~---~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALA-EALEAAG--KRVIGLAPTNKAAK---ELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHH-HHHHHTT----EEEEESSHHHHH---HHHHHH------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHH-HHHHhCC--CeEEEECCcHHHHH---HHHHhh------
Confidence 478899999999875 122235777899999998765544 4444333 68899999875432 122211
Q ss_pred EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhc------cccCcceEecccccccCCchhHHHHHhhcccc-ce
Q 000099 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL------SKVDWKYIIIDEAQRMKDRESVLARDLDRYRC-QR 1152 (2240)
Q Consensus 1080 vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L------~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks-~~ 1152 (2240)
.+-..|...+....... .....++||||||--+-+ ..+...+..... ..
T Consensus 67 ----------------------~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 67 ----------------------GIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLAKKSGA 122 (196)
T ss_dssp ----------------------TS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-T-T-
T ss_pred ----------------------CcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHHHhcCC
Confidence 01122222222211110 023568999999998843 334444444433 56
Q ss_pred EEEeecCCCC
Q 000099 1153 RLLLTGTPLQ 1162 (2240)
Q Consensus 1153 RLLLTGTPLQ 1162 (2240)
+|+|.|-|-|
T Consensus 123 klilvGD~~Q 132 (196)
T PF13604_consen 123 KLILVGDPNQ 132 (196)
T ss_dssp EEEEEE-TTS
T ss_pred EEEEECCcch
Confidence 9999999865
No 270
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.31 E-value=0.0084 Score=62.88 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechHH-HHHHHHHHHHHCCCCeEEEEecchhhHhHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNAV-LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~SL-L~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~q 1094 (2240)
+..++|..+.|+|||..+-.++..+.... ....-+.|-||... ...+..++...+...... ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~----------- 70 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQ----------- 70 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cC-----------
Confidence 44568899999999998877776654321 11222344444443 445555554432110000 00
Q ss_pred HHhhcCCcEEEEcHHHHHH-hhhhccccCcceEecccccccCCchhHHHHHhhcc--ccceEEEeecCC
Q 000099 1095 EVAALKFNVLVTTYEFIMY-DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTP 1160 (2240)
Q Consensus 1095 ei~~~~fdVVITTYE~L~k-D~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L--ks~~RLLLTGTP 1160 (2240)
+...+.. -...+....-.+|||||+|++. .......|..+ .....++|+|||
T Consensus 71 ------------~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 ------------TSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ------------CHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1111111 1122333333799999999983 24444555444 556689999999
No 271
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=96.31 E-value=0.013 Score=57.70 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000099 810 REKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (2240)
Q Consensus 810 r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~~~kr~~~~~~~rl~~lk~ 870 (2240)
..-.|+.++.|+++|.+.+...........+.|..||.+.++++.|+.++++++||++|++
T Consensus 13 ~d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 13 WDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445899999999999988777777777899999999999999999999999999999963
No 272
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.29 E-value=0.0029 Score=85.92 Aligned_cols=179 Identities=23% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCch--HHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLG--KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLG--KTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
.+.+||...+.-....... ...++++.|+| ||+.+..++.+... .+.....++++|..+..+|..+...++..-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLNELAL--RVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFNIRL 160 (866)
T ss_pred ccCcchhhhhhhhhhhhhh--chhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhccccc
Confidence 5666776655333322222 26889999999 89988776665543 5566788999999999999999877642221
Q ss_pred EEEEec-chhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----hhhccccCc---ceEecccccccCCch---------hH
Q 000099 1078 CIYYVG-AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDW---KYIIIDEAQRMKDRE---------SV 1140 (2240)
Q Consensus 1078 Vvvy~G-skdeRk~l~~qei~~~~fdVVITTYE~L~kD----~s~L~kikW---d~VIIDEAHrLKN~~---------SK 1140 (2240)
.++... ........ ...........+++........ ...+....| +++++||+|.+.+.. ..
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (866)
T COG0553 161 AVLDKEGLRYLLKQY-DAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETL 239 (866)
T ss_pred hhhhhhhhhhhhhhh-cccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhh
Confidence 111111 11100000 0000000000023333333322 223344456 899999999987642 22
Q ss_pred HHHHhhccc--c------ceEEEeecCCCCCCHHHHHHHHhhhcccccCC
Q 000099 1141 LARDLDRYR--C------QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1182 (2240)
Q Consensus 1141 lskaLk~Lk--s------~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S 1182 (2240)
.+..+.... . ...+++++||......+++....++.+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 240 EYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 233333221 1 12347899998888777776666666555444
No 273
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.18 E-value=0.011 Score=66.10 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=67.5
Q ss_pred HHhcCCeEEEEecchhHHHHHHHHHHhcC----ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc--cccccCCC
Q 000099 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR--AAGRGLNL 1413 (2240)
Q Consensus 1340 L~atGhKVLIFSQ~t~~LDiLed~L~~rG----iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr--AGGeGLNL 1413 (2240)
+.....++|||+..-..++.+.+++.... +.+..- + ..++..+++.|..... .+|+++. ...+|||+
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccC---eEEEEEecccEEEeecC
Confidence 34567899999999999999999998664 333322 2 4578899999997433 4788887 99999999
Q ss_pred CC--CCeEEEcCCCC-Chhh-----------------------------HHHHhhhhhccCCcceE
Q 000099 1414 QS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1414 Qa--ADtVIifD~pW-NP~~-----------------------------d~QAiGRAhRIGQKKeV 1447 (2240)
.+ |..||+.-.|+ +|.. ..|++||+.|-....-+
T Consensus 78 ~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~ 143 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV 143 (167)
T ss_dssp ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE
T ss_pred CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE
Confidence 96 88999999996 3321 24889999997754433
No 274
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.04 E-value=0.05 Score=72.84 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHK 1071 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~K 1071 (2240)
..|-+.|..+|.+++. +....|+-...|+|||.+++.++..+.. .+ .++||++|+.. +.+....+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~-~g--~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVK-RG--LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHH-cC--CCEEEEcCcHHHHHHHHHHHHh
Confidence 4688999999988764 2345688999999999999998888775 22 38999999774 6667666765
No 275
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.00 E-value=0.064 Score=55.53 Aligned_cols=117 Identities=16% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecch
Q 000099 1008 GLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAK 1085 (2240)
Q Consensus 1008 GLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~Gsk 1085 (2240)
.+.++...... +...+|..+.|+|||..+-.++..+.. ...+++++........+......+..
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~----------- 71 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHF----------- 71 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhh-----------
Confidence 33444433333 556789999999999777665554431 22355555444333333322211110
Q ss_pred hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC-chhHHHHHhhccc------cceEEEeec
Q 000099 1086 DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYR------CQRRLLLTG 1158 (2240)
Q Consensus 1086 deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lk------s~~RLLLTG 1158 (2240)
...... .........+|||||++++.. ....+...+..+. ....+++|+
T Consensus 72 ----------------------~~~~~~--~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~ 127 (151)
T cd00009 72 ----------------------LVRLLF--ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGAT 127 (151)
T ss_pred ----------------------hHhHHH--HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEec
Confidence 000111 111223567999999999832 2233444444442 456777887
Q ss_pred CCCC
Q 000099 1159 TPLQ 1162 (2240)
Q Consensus 1159 TPLQ 1162 (2240)
++..
T Consensus 128 ~~~~ 131 (151)
T cd00009 128 NRPL 131 (151)
T ss_pred Cccc
Confidence 7644
No 276
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.00 E-value=1 Score=57.50 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=62.6
Q ss_pred CeEEEEecchhHHHHHHHHHHhc---------CceEEeecCCCCHHHHHHHHHHH--hcCCCCccEEEEecccccccCCC
Q 000099 1345 HRVLLFSTMTKLLDILEEYLQWR---------QLVYRRIDGTTSLEDRESAIVDF--NSHDSDCFIFLLSIRAAGRGLNL 1413 (2240)
Q Consensus 1345 hKVLIFSQ~t~~LDiLed~L~~r---------Giky~rLDGsTs~eEReeaIk~F--Ns~Ds~~fVfLLSTrAGGeGLNL 1413 (2240)
.-+|||-.-.+..+..++.+... .++++-|+ ..+...+++-- +..+..-+-+++||..+...|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 45788876655554444443311 23444455 22222222211 11122335689999999999988
Q ss_pred CCCCeEEEcCCC------CCh-----------hhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1414 QSADTVIIYDPD------PNP-----------KNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1414 QaADtVIifD~p------WNP-----------~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.++-+|| |+- +|| ..-.||.-|++|.|.+++-..|+|.+
T Consensus 330 dgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYt 385 (699)
T KOG0925|consen 330 DGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 385 (699)
T ss_pred ccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeec
Confidence 8876665 332 343 44568888999999899888888876
No 277
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.99 E-value=0.033 Score=72.09 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=92.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHH-------
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELH------- 1070 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~------- 1070 (2240)
..|-+-|..++.+++. +..--|+-.+.|+|||.+..-+|..++..+ ..+||.+|+.+ +.|..+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~~~~~~l~ 257 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLTHLKLNLV 257 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhcccccchh
Confidence 4678899999998875 223357889999999999999999988633 58899999874 777766432
Q ss_pred ------HHCCC-----CeEEEEecc----------------------h--hhHhHH------HHHH----------Hhhc
Q 000099 1071 ------KWLPS-----VSCIYYVGA----------------------K--DQRSRL------FSQE----------VAAL 1099 (2240)
Q Consensus 1071 ------Kw~Ps-----lkVvvy~Gs----------------------k--deRk~l------~~qe----------i~~~ 1099 (2240)
+..+. +..++-.+. + ..++.+ +..+ ....
T Consensus 258 R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~ 337 (649)
T KOG1803|consen 258 RVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIIS 337 (649)
T ss_pred hcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11110 111111110 0 000000 0000 1134
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCC
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQ 1162 (2240)
+..||++|-..... ..+.+..|++||||||--...+.|... +. ...+++|.|-|.|
T Consensus 338 n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQamE~~cWip--vl---k~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 338 NSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQAMEPQCWIP--VL---KGKKFILAGDPKQ 393 (649)
T ss_pred ccceEEEeccchhh--hhhcccCCCEEEEehhhhhccchhhhH--Hh---cCCceEEeCCccc
Confidence 56788888655443 455567899999999877655444322 22 2238999999865
No 278
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.92 E-value=0.039 Score=71.50 Aligned_cols=133 Identities=20% Similarity=0.324 Sum_probs=88.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~PslkV 1078 (2240)
+|-.-|..+|...+. +.=.||-.+.|+|||++..+++.+|.+. ..+|+||++|..+ +.|-...|.+- +++|
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--CceE
Confidence 788899999998886 5557999999999999998888888764 5689999999775 67777777763 3555
Q ss_pred EEEecchhhH----------------------hHHHH-----------------------HHHhhcCCcEEEEcHHHHHH
Q 000099 1079 IYYVGAKDQR----------------------SRLFS-----------------------QEVAALKFNVLVTTYEFIMY 1113 (2240)
Q Consensus 1079 vvy~GskdeR----------------------k~l~~-----------------------qei~~~~fdVVITTYE~L~k 1113 (2240)
+-+.....+. ..+.. ........+|+.||--..
T Consensus 482 vRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A-- 559 (935)
T KOG1802|consen 482 VRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA-- 559 (935)
T ss_pred eeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc--
Confidence 5433221110 00000 001123456666664222
Q ss_pred hhhhccccCcceEecccccccCCchhHHH
Q 000099 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1114 D~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
-...|.+++|..|+|||+-..-.+.+.+-
T Consensus 560 gd~rl~~~kfr~VLiDEaTQatEpe~LiP 588 (935)
T KOG1802|consen 560 GDRRLSKFKFRTVLIDEATQATEPECLIP 588 (935)
T ss_pred cchhhccccccEEEEecccccCCcchhhh
Confidence 22446778999999999987766555444
No 279
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.67 E-value=0.055 Score=72.43 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=38.8
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHH
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIAL 1039 (2240)
.|..+. .++|+-|+.-+..+++......+|+|-++||+|||+.-|..
T Consensus 14 v~V~fP-~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS 60 (945)
T KOG1132|consen 14 VPVEFP-FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCS 60 (945)
T ss_pred ceeecc-CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHH
Confidence 344443 36789999999999999999999999999999999876553
No 280
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=95.66 E-value=0.0019 Score=78.88 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=62.2
Q ss_pred cCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000099 1973 ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 2039 (2240)
Q Consensus 1973 ~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~ 2039 (2240)
-.|+|-++ |+.|||+.+|.++|+-.+|.+..+|..|++||..||..||-...-+|..|..|..+-.
T Consensus 48 map~y~~i-is~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 48 MAPNYLEI-ISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRL 113 (418)
T ss_pred hccchHhh-hhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhc
Confidence 36999999 9999999999999999999999999999999999999999999999999999877643
No 281
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=95.60 E-value=0.011 Score=80.93 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=70.2
Q ss_pred hhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 1963 PLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 1963 ~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
..|..+..-++.+|||.| |..||||+++...|...-|..-+.|..|+.||++|...||++-+-.-..|...-.+.+.+|
T Consensus 1280 ~~f~~Pv~~k~v~dyy~v-i~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1280 YPFPTPVNAKEVKDYYRV-ITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred cCCCCccchhhccchhhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhh
Confidence 457777888999999999 9999999999999999999999999999999999999999998887777776666655554
Q ss_pred H
Q 000099 2043 K 2043 (2240)
Q Consensus 2043 k 2043 (2240)
+
T Consensus 1359 ~ 1359 (1563)
T KOG0008|consen 1359 K 1359 (1563)
T ss_pred c
Confidence 3
No 282
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=95.48 E-value=0.0047 Score=82.26 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=76.3
Q ss_pred Ccchhhhhhhcc--cccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000099 1959 HQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHD 2036 (2240)
Q Consensus 1959 r~l~~~F~~~p~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~ 2036 (2240)
|++++.|..+.. ....|+||.+ |.+|||+.+|+.+|....|..+.+=+.|+.-||.||..||...-.|+..+..|++
T Consensus 7 ~~~~~~f~~~v~~v~l~~~~~~~~-~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~ 85 (640)
T KOG1474|consen 7 HKLAWPFLEPVDAVALNLPAYYEI-IKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEK 85 (640)
T ss_pred ccccccccCccchhhccchhhhcc-cCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchh
Confidence 445555555532 4456999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 000099 2037 LFFDLLKIAFP 2047 (2240)
Q Consensus 2037 ~F~~~~k~~fP 2047 (2240)
+|...+..++-
T Consensus 86 ~~~~~~~~~~~ 96 (640)
T KOG1474|consen 86 LFPKKLRSMPS 96 (640)
T ss_pred hcccccccccc
Confidence 99887766653
No 283
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.39 E-value=0.067 Score=63.22 Aligned_cols=113 Identities=21% Similarity=0.229 Sum_probs=73.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV- 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl- 1076 (2240)
+..||+-|.+.+..|++- ..+.|.++-.-||-|||-+++=+++.++. .+ ..=+-+|||..++.+-..-+...+.++
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-dg-~~LvrviVpk~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALA-DG-SRLVRVIVPKALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHc-CC-CcEEEEEcCHHHHHHHHHHHHHHHHHHh
Confidence 347999999999999863 45678899999999999888777776664 22 234678889999998777776665432
Q ss_pred --eEEEEecchh-----hH-hHHHHH-HHhhcCCcEEEEcHHHHHH
Q 000099 1077 --SCIYYVGAKD-----QR-SRLFSQ-EVAALKFNVLVTTYEFIMY 1113 (2240)
Q Consensus 1077 --kVvvy~Gskd-----eR-k~l~~q-ei~~~~fdVVITTYE~L~k 1113 (2240)
.++.+.-+.. .. ..+... ......-.|+|+|++.+..
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 2222211111 11 111100 1122456799999987753
No 284
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.34 E-value=0.11 Score=69.16 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechHHHHH-HHHHHHHHCCCCeEE
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVLVN-WKSELHKWLPSVSCI 1079 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~SLL~Q-W~~Ef~Kw~PslkVv 1079 (2240)
+.|+.++..++. +.-.||....|+|||.++..++..+...... ...+++++|+.-... ..+-+..-...+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 789999887776 5567999999999999998888877654322 246889999875443 333333222111100
Q ss_pred EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--------hccccCcceEecccccccCCchhHHHHHhhccccc
Q 000099 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--------KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1080 vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--------~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~ 1151 (2240)
..... ...+-..|...+..... .-....+++||||||--+- ...+...+..+...
T Consensus 224 -----~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 -----EALIA----------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKALPPN 286 (586)
T ss_pred -----hhhhh----------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHhcCCC
Confidence 00000 00111222222221110 0112368999999998773 23455566677778
Q ss_pred eEEEeecCCCC
Q 000099 1152 RRLLLTGTPLQ 1162 (2240)
Q Consensus 1152 ~RLLLTGTPLQ 1162 (2240)
.+|+|.|-|-|
T Consensus 287 ~rlIlvGD~~Q 297 (586)
T TIGR01447 287 TKLILLGDKNQ 297 (586)
T ss_pred CEEEEECChhh
Confidence 89999998755
No 285
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.23 E-value=0.14 Score=65.33 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=48.6
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
.|..|.-...+|-|..-..-+......+.+|||-.+.|+|||+.-+++|.......+..-.-||-|-
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 3444544578888977666666677788999999999999999999987655544444444466664
No 286
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.96 E-value=0.12 Score=61.67 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
..+.||.-+.|+|||..+-++...+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999988777666544
No 287
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.95 E-value=0.18 Score=68.65 Aligned_cols=134 Identities=22% Similarity=0.204 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkV 1078 (2240)
..|.+-|.+++..+.. +.-.||....|+|||.++-+++..+.. .+...++++++|+........|..- ...
T Consensus 322 ~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~~g----~~a 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEVTG----LTA 392 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHhcC----Ccc
Confidence 4789999999988753 446799999999999887666655443 3322578888998876655444210 000
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeec
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 1158 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTG 1158 (2240)
..-.+++. . ..+-. ...... .....++||||||+.+-. ..+...+..+....+|+|-|
T Consensus 393 -------~Tih~lL~----~-~~~~~------~~~~~~--~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 393 -------STIHRLLG----Y-GPDTF------RHNHLE--DPIDCDLLIVDESSMMDT--WLALSLLAALPDHARLLLVG 450 (720)
T ss_pred -------ccHHHHhh----c-cCCcc------chhhhh--ccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEEEC
Confidence 00001110 0 00000 000000 124578999999999842 23445556667778999999
Q ss_pred CCCCC
Q 000099 1159 TPLQN 1163 (2240)
Q Consensus 1159 TPLQN 1163 (2240)
-|-|-
T Consensus 451 D~~QL 455 (720)
T TIGR01448 451 DTDQL 455 (720)
T ss_pred ccccc
Confidence 87653
No 288
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.76 E-value=0.15 Score=68.70 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=28.6
Q ss_pred cCcceEecccccccCCch-hHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
-+|+++||||+|.|.+.. ..+.+.|.......+++|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 478999999999996432 3455555565666788888774
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.62 Score=59.31 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH--HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA--VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S--LL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
...++...+|+|||.++.-+..++.... .....+++|+=.. .-..|. +..|+..+.+-+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv---------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV---------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce----------------
Confidence 3457899999999999877776665432 1234555555322 222222 444432111111
Q ss_pred hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchh---HHHHHhhcccc--ceEEEeecCCCCCCHHHHHHH
Q 000099 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRC--QRRLLLTGTPLQNDLKELWSL 1171 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~Lks--~~RLLLTGTPLQNnL~ELwSL 1171 (2240)
.++.++..+......+ .++++||||++.+...... .+...+..... ...|.|+||--.+.+.+++.-
T Consensus 237 ------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 237 ------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 1122334443332333 3689999999998864322 33333333332 457889999888888888877
Q ss_pred Hhhhccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000099 1172 LNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (2240)
Q Consensus 1172 LnFLlP~-----------iF~S~~sF~e~F~kPf~~~g~~~~~ 1203 (2240)
+..+.+. -++..-.+...+..|+...+.....
T Consensus 309 ~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~v 351 (388)
T PRK12723 309 FSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351 (388)
T ss_pred hcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 7654332 1234445666677787765544433
No 290
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.48 E-value=0.2 Score=66.98 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=83.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHHHHH-HHHHCCCCeE
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNWKSE-LHKWLPSVSC 1078 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~QW~~E-f~Kw~PslkV 1078 (2240)
+-+.|+.++...+. +.-.||....|+|||.++..++..+.+... ....+++++|+.-...=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999977765 555799999999999999888887765332 23467888898754443333 2211111100
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--------hhccccCcceEecccccccCCchhHHHHHhhcccc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks 1150 (2240)
....+ ..+..-..|...+.... ..-....+++|||||+--+- -......+..+..
T Consensus 229 -----~~~~~----------~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~ 291 (615)
T PRK10875 229 -----TDEQK----------KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALPP 291 (615)
T ss_pred -----chhhh----------hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhccc
Confidence 00000 00011122222222111 01122467999999998873 3445566677788
Q ss_pred ceEEEeecCCCC
Q 000099 1151 QRRLLLTGTPLQ 1162 (2240)
Q Consensus 1151 ~~RLLLTGTPLQ 1162 (2240)
..||+|-|-|-|
T Consensus 292 ~~rlIlvGD~~Q 303 (615)
T PRK10875 292 HARVIFLGDRDQ 303 (615)
T ss_pred CCEEEEecchhh
Confidence 889999998755
No 291
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=0.034 Score=71.54 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=58.6
Q ss_pred EcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHH-----HCCCCeEEEEecchhhHhHHHHHHHhh
Q 000099 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHK-----WLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (2240)
Q Consensus 1025 ADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~K-----w~PslkVvvy~GskdeRk~l~~qei~~ 1098 (2240)
-+.||+|||+++.++|++++. ..+..+|+.|- +++|..-...|.. ++- -.++.|.+..-.-+.+-.-..-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~--kgyr~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYK--KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred ccccCCChhhHHHHHHHHHHH--hchhhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeecccCccC
Confidence 367999999999999999885 44567777774 5566544433321 110 01111222111111110000123
Q ss_pred cCCcEEEEcHHHHHHhhh----------hccccCcceEecccccccC
Q 000099 1099 LKFNVLVTTYEFIMYDRS----------KLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1099 ~~fdVVITTYE~L~kD~s----------~L~kikWd~VIIDEAHrLK 1135 (2240)
....|++||.+.+..+.. .|.. .--+++-||||++.
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~-~klvfl~deahhln 125 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKD-QKLVFLADEAHHLN 125 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhh-CceEEEechhhhhh
Confidence 345799999988876521 1222 22356789999993
No 292
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.14 E-value=0.27 Score=67.71 Aligned_cols=115 Identities=16% Similarity=0.066 Sum_probs=57.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCeEEEEecchhh-HhHHHHHHHhhc
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIYYVGAKDQ-RSRLFSQEVAAL 1099 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-~PslkVvvy~Gskde-Rk~l~~qei~~~ 1099 (2240)
-||....|+|||..+..|...|....+.....+-.|+. +..|..- ...+.++.+.+.... ...+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s------C~~~~~g~~~~~dv~eidaas~~~Vd~iR------- 106 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS------CVALAPGGPGSLDVTEIDAASHGGVDDAR------- 106 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH------HHHHHcCCCCCCcEEEecccccCCHHHHH-------
Confidence 38999999999999988887776432211111223433 1222111 122444444332110 00000
Q ss_pred CCcEEEEcHHHHHHhhh-hccccCcceEecccccccCCch-hHHHHHhhccccceEEEeecC
Q 000099 1100 KFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s-~L~kikWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLLTGT 1159 (2240)
.++.... .-...+|+++||||+|+|.... ..+.+.|.......+++|+.|
T Consensus 107 ----------~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 107 ----------ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred ----------HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 0000000 0112478999999999995422 235555555555556666544
No 293
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.04 E-value=0.11 Score=52.94 Aligned_cols=43 Identities=23% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+.+|.-++|+|||..+..++..+.... ..++++.+......|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 4568999999999998877765544211 356777766544433
No 294
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.19 Score=68.89 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=27.4
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
-+|.++||||+|+|.. ....+.+.|.......+++|..|-
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 4789999999999942 223455555555666677777553
No 295
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.21 Score=64.66 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCC-C--eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL-N--GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l-n--GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..|...+.++. + -|+..+.|+|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4444444444333332 2 399999999999998888776653
No 296
>PLN03025 replication factor C subunit; Provisional
Probab=93.86 E-value=0.42 Score=58.87 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=31.8
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCCCCCCHHHHHH
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwS 1170 (2240)
..|++|||||+|.|-. ....+.+.+..+....+++|+.+....-+..|-+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 3689999999999953 2233445555555566788887765443344443
No 297
>PRK04296 thymidine kinase; Provisional
Probab=93.84 E-value=0.18 Score=57.81 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=25.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
.++..+||.|||..++.++..+.. ...+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 477889999999988888776654 2346677754
No 298
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=93.47 E-value=0.15 Score=70.12 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=79.1
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-----HHHHHHHHHHCCCCeEEEEecchhhH
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-----VNWKSELHKWLPSVSCIYYVGAKDQR 1088 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-----~QW~~Ef~Kw~PslkVvvy~GskdeR 1088 (2240)
.+|+.+.+.+++...|+|||+++=..+.. ....+.++-|+|...+ ..|...|.+. .+..++-..|.....
T Consensus 1154 ~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~ 1228 (1674)
T KOG0951|consen 1154 SLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLD 1228 (1674)
T ss_pred eeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccc
Confidence 35677888999999999999877444332 4566789999998754 4588888776 566777777765443
Q ss_pred hHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch
Q 000099 1089 SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138 (2240)
Q Consensus 1089 k~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~ 1138 (2240)
.++ ...-+|+|.|++.+-... .. -..++.|+||.|.+....
T Consensus 1229 lkl------~~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1229 LKL------LQKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred hHH------hhhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccC
Confidence 222 345689999999875442 11 256899999999987533
No 299
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=93.40 E-value=0.035 Score=59.12 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=34.2
Q ss_pred cccccc-CCCCc--ccccchhhhhcCCCCcccccchhhccCcc
Q 000099 1731 RLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEI 1770 (2240)
Q Consensus 1731 ~l~~~f-~lps~--~~~~~yya~i~~P~dl~~~i~~~leeg~y 1770 (2240)
..+.+| ..++. ...||||.+||+||||++ |..+|.++.+
T Consensus 19 ~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~t-i~~kl~~~~~ 60 (114)
T cd05494 19 EDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGT-KVNNIVETGA 60 (114)
T ss_pred CCCCCcCCCCCchhcCCCChhhhcCCCCChHH-HHHHHHcccc
Confidence 456778 66677 889999999999999999 9999999987
No 300
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.27 E-value=1.9 Score=57.45 Aligned_cols=353 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh---hhhccccCcceEecccccccCC------
Q 000099 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD---RSKLSKVDWKYIIIDEAQRMKD------ 1136 (2240)
Q Consensus 1066 ~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD---~s~L~kikWd~VIIDEAHrLKN------ 1136 (2240)
..|+.......+.+.|+|+ .......++|+..|+.|..+ ...=...+-.+|||||||++.+
T Consensus 299 iEdLv~lGk~~~~CPYY~S----------R~avp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlidti~smh 368 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYAS----------RRAVPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLIDTICSMH 368 (821)
T ss_pred HHHHHHhhhhcCCCCchhh----------hhccccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHHHHHHhh
Q ss_pred -------chhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCC--CCCCCChhh
Q 000099 1137 -------RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG--PTHNADDDW 1207 (2240)
Q Consensus 1137 -------~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g--~~~~~e~d~ 1207 (2240)
.-+.....|..|..++-.-|.+ +|+.-|--|+.++ ..|...+..-+...+ ..-...+-.
T Consensus 369 sa~Is~~ql~~a~~~i~~Y~~rf~~rl~~----~N~~~l~ql~~l~--------~~ll~fl~~~~~~~~~~~~~~~~dfl 436 (821)
T KOG1133|consen 369 SAEISFSQLCRAHKQIQQYFERFGKRLKA----KNLMYLKQLLSLL--------RRLLKFLDSNCELNGNGESLMRNDFL 436 (821)
T ss_pred hhheeHHHHHHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHH--------HHHHHHHHhhhhhCCcccccchhhhh
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCC------------CceEEEEEeccCHHHHHHHHHHHHccCcccCchh
Q 000099 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP------------PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP------------~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~ 1275 (2240)
+...-....+..|...+.--.+-|........+- ..++..-.-++++....-...++...+.....+.
T Consensus 437 ~~~~id~iNL~kl~~Yi~~S~i~rKv~G~~~r~~~~~s~plq~l~~~~~~~~ee~~~~ps~l~~l~~FL~~LTn~~~dGr 516 (821)
T KOG1133|consen 437 FSSGIDNINLFKLLDYIEKSKIARKVDGFGERLSEVFSQPLQSLQKKRVEAEEESQLKPSPLFELSSFLGALTNNNEDGR 516 (821)
T ss_pred hhcCccceeHHHHHHHHHHhhHHHHhcchhhcchhhccchhhHhhhccccchhcccCCCchhHHHHHHHHHHhCCCCCCc
Q ss_pred HHhhhhcC---hhhHHHHHHHHHHHHHHHHHH-----------------------------cCC--------CCCCCCCc
Q 000099 1276 EKRRVQKN---PIYQAKVYKTLNNRCMELRKT-----------------------------CNH--------PLLNYPYF 1315 (2240)
Q Consensus 1276 e~~~l~~~---~~~~ak~~~sL~nilmqLRKI-----------------------------CNH--------P~L~~p~~ 1315 (2240)
..-..... ........+.+..++.+.|-+ |+| |+++....
T Consensus 517 i~~~k~~s~~lky~lL~pA~~f~evv~earavvLAGGTMeP~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~~gp 596 (821)
T KOG1133|consen 517 IFYSKQGSGTLKYMLLNPAKHFAEVVLEARAVVLAGGTMEPVDELREQLFPGCPERISPFSCSHVIPPENILPLVVSSGP 596 (821)
T ss_pred EEEeccCCceEEEEecCcHHHHHHHHHHhheeeecCCccccHHHHHHHhcccchhhccceecccccChhheeeeeeccCC
Q ss_pred cccchhhHhhcccHHHHHHHHHHHH----HhcCCeEEEEecchhHHHHHHHHHHhcCc-------eEEeecCCCCHHHHH
Q 000099 1316 SDLSKDFLVKSCGKLWILDRILIKL----QRTGHRVLLFSTMTKLLDILEEYLQWRQL-------VYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1316 ~~ls~d~LirsSGKLelLdrIL~kL----~atGhKVLIFSQ~t~~LDiLed~L~~rGi-------ky~rLDGsTs~eERe 1384 (2240)
.....++....-+--.+|..+-..+ ..-..=|++|...-..+..+..++...|+ +-+.+....+.++--
T Consensus 597 sg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~dvl 676 (821)
T KOG1133|consen 597 SGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVEDVL 676 (821)
T ss_pred CCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHHHHH
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCC--CCeEEEcCCCCC--------------------hh------------h
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDPN--------------------PK------------N 1430 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa--ADtVIifD~pWN--------------------P~------------~ 1430 (2240)
+-...=-........|-+--.-.++|||+.+ +..||+...|+- |. .
T Consensus 677 ~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkA 756 (821)
T KOG1133|consen 677 EGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKA 756 (821)
T ss_pred HHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Q ss_pred HHHHhhhhhc
Q 000099 1431 EEQAVARAHR 1440 (2240)
Q Consensus 1431 d~QAiGRAhR 1440 (2240)
..|.||||-|
T Consensus 757 VNQsIGRAIR 766 (821)
T KOG1133|consen 757 VNQSIGRAIR 766 (821)
T ss_pred HHHHHHHHHh
No 301
>CHL00181 cbbX CbbX; Provisional
Probab=93.24 E-value=0.24 Score=60.51 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=27.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL 1062 (2240)
+.+.||.-+.|+|||..|-++...+..... ..++++.|....++
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 455689999999999999888766554221 12344444433343
No 302
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.15 E-value=0.26 Score=61.37 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCccCCCCCc-HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH--------
Q 000099 993 PSMLRAGTLR-DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-------- 1063 (2240)
Q Consensus 993 Ps~L~ggtLR-PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-------- 1063 (2240)
+....|.+.| -||.-++..++. ..-.=..|...-|+|||+.|+|.-.+-...++.+..++|--|.--+.
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCC
Confidence 3333443333 378888877764 11122467778899999998887665544466666655554543222
Q ss_pred -------HHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC
Q 000099 1064 -------NWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1064 -------QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN 1136 (2240)
-|..-|.. ++.++.-..... ...+..........|.-.||= +-+ .+.-.+||||||+++--
T Consensus 298 ~eEeKm~PWmq~i~D---nLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~I---RGR----Sl~~~FiIIDEaQNLTp 365 (436)
T COG1875 298 TEEEKMGPWMQAIFD---NLEVLFSPNEPG--DRALEEILSRGRIEVEALTYI---RGR----SLPDSFIIIDEAQNLTP 365 (436)
T ss_pred chhhhccchHHHHHh---HHHHHhcccccc--hHHHHHHHhccceeeeeeeee---ccc----ccccceEEEehhhccCH
Confidence 23332211 111100000000 111111111222233333321 111 23456899999999853
Q ss_pred chhHHHHHhhccccceEEEeecCCCCCC
Q 000099 1137 RESVLARDLDRYRCQRRLLLTGTPLQND 1164 (2240)
Q Consensus 1137 ~~SKlskaLk~Lks~~RLLLTGTPLQNn 1164 (2240)
+ .+--.+.+.-...++.|||-|.|-+
T Consensus 366 h--eikTiltR~G~GsKIVl~gd~aQiD 391 (436)
T COG1875 366 H--ELKTILTRAGEGSKIVLTGDPAQID 391 (436)
T ss_pred H--HHHHHHHhccCCCEEEEcCCHHHcC
Confidence 2 2333344555667999999986543
No 303
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.08 E-value=0.4 Score=64.08 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
||..+.|+|||..+..+...|..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 88999999999999888877753
No 304
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.01 E-value=0.23 Score=60.42 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=26.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEec
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVP 1058 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP 1058 (2240)
+.+.+|..+.|+|||..|.++...+...... .++++.|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 4467899999999999997777666542221 235454443
No 305
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.55 E-value=0.55 Score=63.96 Aligned_cols=147 Identities=21% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkV 1078 (2240)
.|-.-|+.++...+...+..+ |+.. .|+|||-+...+|..|... .+.+|+.+=++ .+.|..-.+..+--.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~L--I~GM-PGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~~i~--- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYAL--ILGM-PGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGFGIY--- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhccchhe--eecC-CCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhccCcc---
Confidence 466789999887775433322 5555 7999999888888877752 34678888654 678877666654211
Q ss_pred EEEecchhhHhHHHH---------------HHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHH
Q 000099 1079 IYYVGAKDQRSRLFS---------------QEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~---------------qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlsk 1143 (2240)
++--|....-..... .........||.+|---+. ...|....|||+|||||--+.-+-
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~----- 812 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPL----- 812 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccch-----
Confidence 222232211111100 0112334456666543322 355667789999999998764321
Q ss_pred HhhccccceEEEeecCCCC
Q 000099 1144 DLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGTPLQ 1162 (2240)
.|.-+....+..|-|-+.|
T Consensus 813 ~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhhhhhcceEEEeccccc
Confidence 2233444556677776543
No 306
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.08 E-value=0.51 Score=57.73 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1006 IVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1006 leGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
...+.++.....++. +.+|..+.|+|||..+.++...+.
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334455555444444 579999999999999988877665
No 307
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.06 E-value=1 Score=52.11 Aligned_cols=92 Identities=24% Similarity=0.281 Sum_probs=54.7
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~ 1097 (2240)
...+.+|..+.|+|||..+.++..++.. . +..++.+....+..|..++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~~~~-------------------------- 86 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE-R---GKSAIYLPLAELAQADPEVLE-------------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-c---CCcEEEEeHHHHHHhHHHHHh--------------------------
Confidence 3456789999999999999887766553 1 223445555554444311110
Q ss_pred hcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCc---hhHHHHHhhcc-ccceEEEeecCC
Q 000099 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGTP 1160 (2240)
Q Consensus 1098 ~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~L-ks~~RLLLTGTP 1160 (2240)
.+. ..++|||||+|.+... ...+...+..+ ....++++|+|.
T Consensus 87 -------------------~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 87 -------------------GLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred -------------------hcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 011 2368999999998643 23344444443 233578888875
No 308
>PRK06526 transposase; Provisional
Probab=91.91 E-value=0.35 Score=58.14 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
....|+- .+.|.+|..+.|+|||..+.++...+.. .+ .+++++. ...|..++.
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~-~g--~~v~f~t----~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQ-AG--HRVLFAT----AAQWVARLA 142 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHH-CC--Cchhhhh----HHHHHHHHH
Confidence 3445664 4678899999999999999998877764 22 2444432 234555554
No 309
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.85 E-value=1.1 Score=60.37 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=26.5
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
-+|+++||||+|+|.. ....+.+.|.......+++|+.|-
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 3789999999999953 223445555555555577777553
No 310
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.84 E-value=0.54 Score=59.11 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|..++..+...+..+. .-|+..+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5566777777766554 3588999999999999888887764
No 311
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.71 E-value=1.2 Score=49.94 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCeEEE
Q 000099 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIY 1080 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-~PslkVvv 1080 (2240)
|.+.+..+..++.++ .+. |+..+.|+||+-.+.+++..++....... .|-.. .....+..- .|++.++
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c---~~c~~~~~~~~~d~~~~- 73 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGEC---RSCRRIEEGNHPDFIII- 73 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSS---HHHHHHHTT-CTTEEEE-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC---HHHHHHHhccCcceEEE-
Confidence 556666676666544 233 88899999999999999988876433322 22111 112222221 2333222
Q ss_pred EecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCC-chhHHHHHhhccccceEEE
Q 000099 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1155 (2240)
Q Consensus 1081 y~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLL 1155 (2240)
......+ .+ ..+.++.-...+. ...|+++||||||+|.. ....+.+.|.......+++
T Consensus 74 -~~~~~~~-------------~i---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 74 -KPDKKKK-------------SI---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp -ETTTSSS-------------SB---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred -ecccccc-------------hh---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2211100 00 0112221111111 13689999999999943 4456777777777788888
Q ss_pred eecCCCCCCH
Q 000099 1156 LTGTPLQNDL 1165 (2240)
Q Consensus 1156 LTGTPLQNnL 1165 (2240)
|+.+=...-+
T Consensus 137 L~t~~~~~il 146 (162)
T PF13177_consen 137 LITNNPSKIL 146 (162)
T ss_dssp EEES-GGGS-
T ss_pred EEECChHHCh
Confidence 8877444333
No 312
>PRK08181 transposase; Validated
Probab=91.58 E-value=1.1 Score=54.48 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
+..-|...+.++......+.|.+|..++|+|||..+.++...+.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 445666666555433456778899999999999999888877765
No 313
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.51 E-value=1.6 Score=59.01 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=28.9
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCCCCCCHHHHH
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 1169 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELw 1169 (2240)
++++|||||+|.|... ...+.+.|.......+++|+.|-...-+.-+.
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 6889999999998531 22344445444455567777664444443333
No 314
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=91.45 E-value=0.27 Score=53.66 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=60.0
Q ss_pred cCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 1982 GNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 1982 I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
-.-|.||.-+.+|++.+.|.+|.+|..||=.++.=++.=-+...|+.+.-..+.-+|+.+|..+||-
T Consensus 56 ~~~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~W 122 (131)
T cd05493 56 ELPPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPW 122 (131)
T ss_pred CCCcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccc
Confidence 3458999999999999999999999999999998887777777788888788899999999999994
No 315
>PF13892 DBINO: DNA-binding domain
Probab=91.35 E-value=4.1 Score=45.24 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhchHHHHHHHHHHhhcCCCcchHHHHHHHHHhHhhhHHHHHHhhhhh
Q 000099 839 NRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKI 916 (2240)
Q Consensus 839 ~r~v~~~h~~~~~~~~kr~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~LL~qte~~l~~l~~~v 916 (2240)
.|.+..|-.+.++++.....+..++.++..+.+++.. + . +.+..+|.+||+|||.|.|+++.++
T Consensus 70 ~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~--e----~--------~rq~~rl~fLl~QTElfsHF~~~k~ 133 (139)
T PF13892_consen 70 MREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKR--E----A--------KRQQRRLNFLLTQTELFSHFMQNKA 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH--H----H--------HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3556666666666655444445556666665554321 1 1 1222458899999999999998654
No 316
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=91.32 E-value=0.04 Score=78.49 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=47.1
Q ss_pred cccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1733 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1733 ~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
+.|| .+++.+..|+||.||++||||++ |..+|.-|.|.+..++.-|+.+
T Consensus 1319 awPFlepVn~~~vp~Y~~IIk~Pmdl~t-ir~k~~~~~Y~~~eef~~Di~l 1368 (1404)
T KOG1245|consen 1319 AWPFLEPVNPKEVPDYYDIIKKPMDLST-IREKLSKGIYPSPEEFATDIEL 1368 (1404)
T ss_pred cchhhccCChhhcccHHHHhcChhHHHH-HHHHHhcccCCCHHHHHHHHHH
Confidence 5788 99999999999999999999999 9999999999999999999997
No 317
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.24 E-value=2.6 Score=54.42 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=80.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~ 1099 (2240)
...+|+-.+|+|||.+++.++.++....+. .++++|.-..--.--...+..|+..+.+-+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGK-KKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 345788899999999998887776511222 345555422100000122333321111100
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchh---HHHHHhhc--cccceEEEeecCCCCCCHHHHHHHHhh
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDR--YRCQRRLLLTGTPLQNDLKELWSLLNL 1174 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~--Lks~~RLLLTGTPLQNnL~ELwSLLnF 1174 (2240)
.++.+...+......+. .+++||||.+-+...... .+...+.. ......|+|++|.-.+.+.+++..+..
T Consensus 282 ---~~~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 282 ---EVVYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred ---EccCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC
Confidence 11112222222222222 589999999876533221 22222331 233557889999988888888888887
Q ss_pred hccc-c----------cCChHHHHhhhcCCcccCCCC
Q 000099 1175 LLPE-V----------FDNRKAFHDWFSQPFQKEGPT 1200 (2240)
Q Consensus 1175 LlP~-i----------F~S~~sF~e~F~kPf~~~g~~ 1200 (2240)
+.+. + |+..-.+......|+...+..
T Consensus 357 ~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 357 LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNG 393 (424)
T ss_pred CCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCC
Confidence 6552 1 233334444455666654433
No 318
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.63 E-value=1.2 Score=59.50 Aligned_cols=41 Identities=20% Similarity=0.074 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..|...+..+ .+. |+..+.|+|||..+..+...+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455555555444432 233 79999999999999888877664
No 319
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.23 E-value=1.7 Score=58.42 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=25.9
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.+|+++||||+|+|-. ....+.+.|.......+++|+.|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 3689999999999843 223345555554445567777663
No 320
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.22 E-value=3.1 Score=57.34 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=35.1
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHH-hhc-CCC-CeE-EEcCCCchHHHHHHHHHHHHHH
Q 000099 991 RQPSMLRAGTLRDYQIVGLQWMLS-LYN-NKL-NGI-LADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLls-L~~-n~l-nGI-LADEMGLGKTIQAIALIa~Lle 1045 (2240)
-+|..|. =|+-|..-|..++. ... .+. ++| |...+|+|||.++-.++..|.+
T Consensus 752 YVPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 752 VVPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3455553 47888887755554 332 222 333 8999999999999888877654
No 321
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.14 E-value=1.4 Score=58.98 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+..+ ..-||....|+|||..+..+...|..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 444444444444333 23588999999999999888877764
No 322
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.81 E-value=1.4 Score=57.43 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Ll 1044 (2240)
-||..+.|+|||..|-++...+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 38999999999998877776654
No 323
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=89.76 E-value=1.8 Score=47.94 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC--CCeEEEcCCCC
Q 000099 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDP 1426 (2240)
Q Consensus 1379 s~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa--ADtVIifD~pW 1426 (2240)
...+...+++.|.....+ .+|+++....+|||++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 334578899999863221 47788777999999996 78999998775
No 324
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.67 E-value=2 Score=53.46 Aligned_cols=44 Identities=30% Similarity=0.244 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHh-hcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSL-YNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLlsL-~~n--~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|+.|++.|...+.- ... ..+.+|..+.|+|||..+-.++..+.+
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77788777555432 222 245789999999999998888877654
No 325
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=89.58 E-value=0.38 Score=63.77 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH-HHHH---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE-LHKW---LP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~E-f~Kw---~P 1074 (2240)
...|||.+.++-|..-. -....+.-..-+|||.+.+.+|.|.+. ...+|+|+|.|+. +...|..+ |... .|
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 68899999987766422 234577778899999998888888875 4458999999976 56667643 4333 34
Q ss_pred CCeEEEEe-cchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccC----CchhHHH---HHhh
Q 000099 1075 SVSCIYYV-GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK----DRESVLA---RDLD 1146 (2240)
Q Consensus 1075 slkVvvy~-GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLK----N~~SKls---kaLk 1146 (2240)
.++-.+.. ...+....++. .....-.+.++...+ ...|.....++||+||..++- +....+. .-..
T Consensus 92 ~l~~~~~~~~~~~~~~t~~~--k~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~ 165 (557)
T PF05876_consen 92 VLRRKLSPSKSRDSGNTILY--KRFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTK 165 (557)
T ss_pred HHHHHhCchhhcccCCchhh--eecCCCEEEEEeCCC----CcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHh
Confidence 33322222 01111111111 111122344444322 245777889999999999983 2233333 3334
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHh
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLn 1173 (2240)
.|.....+++..||.......++.++.
T Consensus 166 tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 166 TFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred hhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 555677999999998876666666554
No 326
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=89.36 E-value=2.2 Score=51.55 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
.-.+...+.-++..++.+.|.+|....|+|||..++|+...+. .++ .+++++.=..++.++...+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHh
Confidence 3344555555555566788889999999999999999998887 332 35666665556655554443
No 327
>PHA02533 17 large terminase protein; Provisional
Probab=89.26 E-value=2.9 Score=55.54 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHH---HHCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELH---KWLP 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~---Kw~P 1074 (2240)
..|.|+|...+.+|.. ... .++.-.=..|||..+.++++++.-..+ ...+++++|..--.. -.+.+. +-.|
T Consensus 58 f~L~p~Q~~i~~~~~~---~R~-~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NRF-NACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc---CeE-EEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 4799999998887632 222 355556789999998877666554333 347788888432111 112222 2223
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-cccc--c
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRC--Q 1151 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lks--~ 1151 (2240)
.+........ .+..+ .. .....|.+.|- +.........+++||||+|.+++.. .++..+. .+.. .
T Consensus 133 ~l~~~~i~~~--~~~~I---~l-~NGS~I~~lss-----~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEW--NKGSI---EL-ENGSKIGAYAS-----SPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeec--CccEE---Ee-CCCCEEEEEeC-----CCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 2110000000 00000 00 11122222221 1233455678899999999998753 3333332 2322 2
Q ss_pred eEEEeecCCC
Q 000099 1152 RRLLLTGTPL 1161 (2240)
Q Consensus 1152 ~RLLLTGTPL 1161 (2240)
.++++..||-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4688888883
No 328
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.24 E-value=1.5 Score=55.22 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+..+...+..+ .+. ||..+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 455555555444432 234 8999999999998888776664
No 329
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=89.08 E-value=4.3 Score=52.69 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=88.6
Q ss_pred ccHHHHHH-HHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1327 CGKLWILD-RILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1327 SGKLelLd-rIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
..++.... .+|+.+. ....++|||+..--..-.|..+|+..++.|+.++--++..+-.++-..|..+ ...++|+|
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G--~~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG--RKPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC--CceEEEEE
Confidence 34555544 4788777 3457899998776666678999999999999999999999999999999965 45577777
Q ss_pred ccccc-ccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCC
Q 000099 1404 IRAAG-RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1443 (2240)
Q Consensus 1404 TrAGG-eGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQ 1443 (2240)
-++-= .=..+.++.+||+|.+|-+|.-|.-.+.-...-.+
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~ 398 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSG 398 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccccc
Confidence 55421 23457779999999999999999988866655443
No 330
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.88 E-value=2.6 Score=55.50 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+......+. +. |+..+.|+|||..+.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4444555544443332 23 89999999999999888877764
No 331
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.72 E-value=8.4 Score=49.62 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=83.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-h---HHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-N---AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~---SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
..+|...+|+|||..+..+...+.. . ...+++|.- + ..+.||.. |+...
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~-~--GkkVglI~aDt~RiaAvEQLk~----yae~l-------------------- 295 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHG-K--KKTVGFITTDHSRIGTVQQLQD----YVKTI-------------------- 295 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-c--CCcEEEEecCCcchHHHHHHHH----Hhhhc--------------------
Confidence 3478889999999998887776653 2 234555553 1 24555553 22111
Q ss_pred hhcCCcEE-EEcHHHHHHhhhhccc-cCcceEecccccccCCchhH---HHHHhhccccc-eEEEeecCCCCCCHHHHHH
Q 000099 1097 AALKFNVL-VTTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRESV---LARDLDRYRCQ-RRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1097 ~~~~fdVV-ITTYE~L~kD~s~L~k-ikWd~VIIDEAHrLKN~~SK---lskaLk~Lks~-~RLLLTGTPLQNnL~ELwS 1170 (2240)
++.++ +.+...+.+....+.. .++++||||-+=+..+.... +...+...... ..|.|++|--.+.+.++..
T Consensus 296 ---gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 296 ---GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ---CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 12222 2233344333333432 36899999988775433322 22223222222 3456888866667777777
Q ss_pred HHhhhccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000099 1171 LLNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (2240)
Q Consensus 1171 LLnFLlP~-----------iF~S~~sF~e~F~kPf~~~g~~~~~ 1203 (2240)
.|+.+... .++..-.+...+..|+...+.....
T Consensus 373 ~F~~~~idglI~TKLDET~k~G~iLni~~~~~lPIsyit~GQ~V 416 (436)
T PRK11889 373 NFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 (436)
T ss_pred HhcCCCCCEEEEEcccCCCCccHHHHHHHHHCcCEEEEeCCCCC
Confidence 66654332 1344445666677787765544443
No 332
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.69 E-value=2.9 Score=51.10 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=26.4
Q ss_pred CcceEecccccccCCch--hHHHHHhhccccceEEEeecCCC
Q 000099 1122 DWKYIIIDEAQRMKDRE--SVLARDLDRYRCQRRLLLTGTPL 1161 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~--SKlskaLk~Lks~~RLLLTGTPL 1161 (2240)
..++|||||+|++.... ..+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 46799999999983322 23334455556667888888643
No 333
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.63 E-value=2.3 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=19.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
.+.+|..+.|+|||-.+.++..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4569999999999988777666554
No 334
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.59 E-value=0.73 Score=58.27 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHHHhCCC-------CCeEEEechHHHHHHHHHHHHHCC
Q 000099 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLMEFKGNY-------GPHLIIVPNAVLVNWKSELHKWLP 1074 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle~kg~~-------GP~LIVVP~SLL~QW~~Ef~Kw~P 1074 (2240)
|..+...+...+..+. .-|+..+.|+|||..+.++..+++...... ...|.+|+..-...|.. ..-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~~HP 101 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AGAHG 101 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--ccCCC
Confidence 5566666666555432 247899999999999999999988533211 12344555432223321 11125
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCC-chhHHHHHhhccc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYR 1149 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN-~~SKlskaLk~Lk 1149 (2240)
++.++.-...... .+. .-.| +.+.++.-..++. .-.|.+|||||+|+|-. ....+.+.+....
T Consensus 102 Dl~~i~~~~~~~~-~~~--------~~~I---~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 102 GLLTLERSWNEKG-KRL--------RTVI---TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred CeEEEeccccccc-ccc--------cccc---cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 5554432110000 000 0011 2233322222221 23789999999999842 2224555555544
Q ss_pred cceE-EEeecCC
Q 000099 1150 CQRR-LLLTGTP 1160 (2240)
Q Consensus 1150 s~~R-LLLTGTP 1160 (2240)
.... |++|-.|
T Consensus 170 ~~~~~IL~t~~~ 181 (365)
T PRK07471 170 ARSLFLLVSHAP 181 (365)
T ss_pred CCeEEEEEECCc
Confidence 4444 4444444
No 335
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.59 E-value=3 Score=50.22 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=30.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
+.+|....|+|||..+.+++.++... ...+++|. +..|...+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it----~~~l~~~l~ 143 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIIT----VADIMSAMK 143 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEE----HHHHHHHHH
Confidence 55899999999999999999888752 23455553 344555544
No 336
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.41 E-value=3.6 Score=54.59 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=26.6
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.|.++||||+|+|... ...+.+.|.......+++|++|-
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 6899999999999532 23455555555555677777653
No 337
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.36 E-value=1.4 Score=51.30 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=67.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|.-.+|.|||-++.-+.+++... ...+.+|+--.--.--.++++.|+..+.+-++.-.....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~------------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD------------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC-------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh-------------
Confidence 3688899999999998888887753 345556653221111223344443222222222110000
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCchh---HHHHHhhcc-ccceEEEeecCCCCCCHHHHHHHHhhh
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLL 1175 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~L-ks~~RLLLTGTPLQNnL~ELwSLLnFL 1175 (2240)
.-+.+......+...++++|+||-+-+..+... .+...+... .....|.|++|--+..+..+......+
T Consensus 68 -----~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 68 -----PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp -----HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred -----hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 001111222334445689999999877654332 222222233 344577888886555555555544444
No 338
>PF13173 AAA_14: AAA domain
Probab=88.32 E-value=2.2 Score=45.76 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=26.2
Q ss_pred CcceEecccccccCCchhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.-.+|||||+|++.+....+-..+... ....+++||+-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccc
Confidence 567899999999976444333333322 45689999984
No 339
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=88.19 E-value=1.6 Score=54.54 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.++|+|....+.++.. ..-.+ -|+..+.|+|||..+..+...++-
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 3688888888888764 22223 368899999999999999888775
No 340
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.15 E-value=3.9 Score=55.22 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..|...+..+. .-|+..+.|+|||..+.+++..|..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4444555554444432 3389999999999999988887764
No 341
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.94 E-value=4.1 Score=53.56 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=25.4
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
+++++||||+|.+... ...+.+.|.......+++|+.|-
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 6889999999999542 22344445444455567776664
No 342
>PF13245 AAA_19: Part of AAA domain
Probab=87.85 E-value=1.5 Score=43.59 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=33.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLVN 1064 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SLL~Q 1064 (2240)
.+|-...|+|||.+++..+.+++.. .....++|||+|+....+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4668899999999999999999853 222568999999875444
No 343
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.82 E-value=1.6 Score=58.47 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-|+..+.|+|||..+..+...+..
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccc
Confidence 467999999999999888877754
No 344
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=87.74 E-value=1.7 Score=48.21 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccc--ccccCCCCC--CCeEEEcCCCC
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRA--AGRGLNLQS--ADTVIIYDPDP 1426 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrA--GGeGLNLQa--ADtVIifD~pW 1426 (2240)
+..++++.|+........+|+++.- .++||||+. +..||+.-.|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4478899998632211235666655 899999997 78999988885
No 345
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=87.57 E-value=2.4 Score=52.88 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=80.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl 1076 (2240)
.++|+|....+.+...+..+. + -|+..+.|+||+..+.+++..++-....... .|+. .+|... .-.|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~---c~~~~~--g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT---RQLIAA--GTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH---HHHHhc--CCCCCE
Confidence 589999999988888765433 2 3788999999999999998888753211111 1221 111110 112554
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCC-chhHHHHHhhccccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~ 1151 (2240)
.++...-.....+ ..-. ...+.++.-...+. .-.++++|||+|++|.. ....+.++|..-...
T Consensus 76 ~~i~~~p~~~~~k---------~~~~---I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~ 143 (319)
T PRK08769 76 QLVSFIPNRTGDK---------LRTE---IVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPG 143 (319)
T ss_pred EEEecCCCccccc---------cccc---ccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCC
Confidence 4442110000000 0000 11222222111111 12689999999999953 334566666666666
Q ss_pred eEEEeecCCCCCCHHHHHH
Q 000099 1152 RRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwS 1170 (2240)
..++|++.-...-+.-|.+
T Consensus 144 ~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 144 RYLWLISAQPARLPATIRS 162 (319)
T ss_pred CeEEEEECChhhCchHHHh
Confidence 6677776643444444444
No 346
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.53 E-value=4.8 Score=50.46 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHhh----cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLY----NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~----~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
..+.+...++.++.... ..+.+.+|..++|+|||..+.+++..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 56666666666554322 24566789999999999999998888875
No 347
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.39 E-value=1.5 Score=51.94 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHH
Q 000099 1003 DYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa 1041 (2240)
+.+..++..+......+. ..+|..+.|+|||..+-.++.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344556666554444433 368899999999977765543
No 348
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.31 E-value=2.8 Score=55.71 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+..+. + -|+..+.|+|||..+..++.++..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444443322 2 478999999999999888877653
No 349
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.08 E-value=4.4 Score=54.41 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCCC---eEEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKLN---GILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~ln---GILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+.+|...+..+.- -||..+.|+|||..+..++..+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55566666655544322 28999999999999988877665
No 350
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.00 E-value=6.6 Score=47.71 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=25.6
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
...+|||||+|.+... ...+...+..+....+++|+++.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 4679999999999542 23445555555555677777653
No 351
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.67 E-value=4.9 Score=53.89 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=57.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhH-hHHHHHHHhhcCC
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQR-SRLFSQEVAALKF 1101 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeR-k~l~~qei~~~~f 1101 (2240)
|+..+-|+|||..+..+..++....+..+...-.|+ -+.+|.. .....++.+.|..... ..+
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~------~c~~i~~-g~~~d~~eid~~s~~~v~~i---------- 104 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP------PCVEITE-GRSVDVFEIDGASNTGVDDI---------- 104 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH------HHHHHhc-CCCCCeeeeeccCccCHHHH----------
Confidence 789999999999998888777643221111111222 1223332 1233444444432100 000
Q ss_pred cEEEEcHHHHHHhhhhc-cccCcceEecccccccCC-chhHHHHHhhccccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L-~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
..+....... ...+|+++||||+|.|-. ....+.+.|.......+++|+.|
T Consensus 105 -------r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 105 -------RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred -------HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 0111111111 123689999999999853 23345555555555556666555
No 352
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.57 E-value=3.4 Score=55.73 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..|...+.++. +. |+...-|+|||..+..+...|..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555555555554332 33 88999999999999888777653
No 353
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=86.35 E-value=1.6 Score=53.80 Aligned_cols=42 Identities=19% Similarity=0.020 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1004 YQIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1004 YQleGLqwLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
+|...|+-|.... +...+-++..+.|+|||-+++++...|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 5777776665433 34455688999999999999988877653
No 354
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.31 E-value=3.2 Score=54.81 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=28.1
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCCCCCCH
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDL 1165 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTPLQNnL 1165 (2240)
-+|+++||||+|.|.. ....+.+.|.......+++|..|-...-+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 3789999999999853 22334455555555566666656433333
No 355
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=86.30 E-value=4.1 Score=56.17 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=72.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
+..|-+-|.+++..++. .+.-.+|....|+|||.++-+++..+.. . ...+++++|+.....-..+- + ++.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~-~--g~~V~~~ApTg~Aa~~L~~~---~-g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEA-A--GYRVIGAALSGKAAEGLQAE---S-GIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHh-C--CCeEEEEeCcHHHHHHHHhc---c-CCc
Confidence 34789999999988764 2234689999999999887665544332 2 34688888987543322211 0 000
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHH--hhhhccccCcceEecccccccCCchhHHHHHhhc-cccceEE
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRL 1154 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~k--D~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~-Lks~~RL 1154 (2240)
. .|...+.. ..........++|||||+..+-. ..+...+.. .....+|
T Consensus 420 a---------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~--~~~~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 420 S---------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS--RQMARVLKEAEEAGAKV 470 (744)
T ss_pred e---------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEE
Confidence 0 01111100 00011123678999999998743 223333432 2456789
Q ss_pred EeecCCCC
Q 000099 1155 LLTGTPLQ 1162 (2240)
Q Consensus 1155 LLTGTPLQ 1162 (2240)
+|.|=|-|
T Consensus 471 iLVGD~~Q 478 (744)
T TIGR02768 471 VLVGDPEQ 478 (744)
T ss_pred EEECChHH
Confidence 99996643
No 356
>PRK08727 hypothetical protein; Validated
Probab=86.29 E-value=5.3 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=19.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.+|..+.|+|||-.+.++...+.+
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 589999999999888887766654
No 357
>PRK08116 hypothetical protein; Validated
Probab=85.80 E-value=5.8 Score=48.27 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
+.+.+|..++|+|||..+.+++.++... ..+++++.-..++..+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRIK 158 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHH
Confidence 3457899999999999999988888753 24555554334444333
No 358
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.67 E-value=0.83 Score=54.12 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=56.3
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
.|-.|-|++...|+|||..+.++...|+-.. .++-+.+.- ..++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-----------------~ke~vLELN----------ASde--------- 89 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDS-----------------YKEAVLELN----------ASDE--------- 89 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChh-----------------hhhHhhhcc----------Cccc---------
Confidence 3456779999999999998888877665310 111111110 0011
Q ss_pred hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch-hHHHHHhhccccceEEEe
Q 000099 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLL 1156 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLL 1156 (2240)
...|||-.+.-.|...+-.|...+++.||+|||+-|.... -.+.+.+.-|....|++|
T Consensus 90 --RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 90 --RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred --cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 1223333333344444455667789999999999985422 233344444444444443
No 359
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=85.35 E-value=3.1 Score=50.53 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=60.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
-||+.+.|+|||..+.++...+..........-..| ..+...-..|.|++..+.-.+... .
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------~ 87 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------I 87 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC--------------C
Confidence 588999999999999999888774332221111111 111111222222222211111110 0
Q ss_pred cEEEEcHHHHHHhhhhcc-ccCcceEecccccccCC-chhHHHHHhhccccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLS-KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~-kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
+|++.-+..+........ ...|.+||||||+.|.. ....+.+.+.......+++|+..
T Consensus 88 ~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 88 DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 111111111111111111 25799999999999943 33455566666677778877764
No 360
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.23 E-value=4.2 Score=53.44 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+..+.....++ .++ |++.+.|+|||..+..+...+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444445555444433 233 6899999999988877766554
No 361
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.11 E-value=5.1 Score=52.95 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=73.8
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000099 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (2240)
Q Consensus 1324 irsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLL 1402 (2240)
...+||.++...++......|.+|||.+.....+..+.+.|+.. +..+..++|.++..+|.+...+...++.+ |++
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVV 81 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVI 81 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 45689999988888888888999999999999888888777654 77888999999999998887777655444 566
Q ss_pred ecccccccCCCCCCCeEEEcC
Q 000099 1403 SIRAAGRGLNLQSADTVIIYD 1423 (2240)
Q Consensus 1403 STrAGGeGLNLQaADtVIifD 1423 (2240)
.|+.+-. +-+...+.||+-+
T Consensus 82 GTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 82 GTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CChHHHc-CcccCCCEEEEEC
Confidence 7665322 3455667777654
No 362
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.06 E-value=3.6 Score=51.33 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEE
Q 000099 1004 YQIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIY 1080 (2240)
Q Consensus 1004 YQleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvv 1080 (2240)
.|...+..+...+..+ .+. |+..+-|+|||..+..++..+.......+...=.|+ ....-.....|++..+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~-----~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT-----NCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCH-----HHHHHhcCCCCCEEEec
Confidence 4555666666555433 234 899999999999998888777643211111111221 11111222345555544
Q ss_pred EecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCC-chhHHHHHhhccccceEEE
Q 000099 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1155 (2240)
Q Consensus 1081 y~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLL 1155 (2240)
..|.. .+.+.++.....+. .-.++++||||+|+|.. ....+.+.|..-.....++
T Consensus 85 ~~~~~--------------------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PDGQS--------------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccccc--------------------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 43321 11122222111111 13689999999999953 2334556666655666777
Q ss_pred eecC
Q 000099 1156 LTGT 1159 (2240)
Q Consensus 1156 LTGT 1159 (2240)
|+.+
T Consensus 145 l~t~ 148 (329)
T PRK08058 145 LLTE 148 (329)
T ss_pred EEeC
Confidence 7665
No 363
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.00 E-value=3.7 Score=50.79 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=29.0
Q ss_pred hhhccccCcceEecccccccCC-chhHHHH---Hhhcccc--ceEEEeecCC
Q 000099 1115 RSKLSKVDWKYIIIDEAQRMKD-RESVLAR---DLDRYRC--QRRLLLTGTP 1160 (2240)
Q Consensus 1115 ~s~L~kikWd~VIIDEAHrLKN-~~SKlsk---aLk~Lks--~~RLLLTGTP 1160 (2240)
...|..+...+|||||.|++.. ...+... +|+.+.. .--+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 3567778999999999999743 3333333 3333322 2346677885
No 364
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.97 E-value=5 Score=51.30 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+.++ .+ -|+..+.|+|||..|.++...+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444444433 22 478999999999999888777653
No 365
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.96 E-value=5.7 Score=50.68 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~P--slkVvvy~GskdeRk~l~~qei 1096 (2240)
+...+|...+|+|||.++..++..+....+. ..+.+|+-...-..=.+.+..|+. ++.+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~--------------- 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV--------------- 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEec---------------
Confidence 4556899999999999998888776543222 345555532221111223333321 1111111
Q ss_pred hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-----ccceEEEeecCCCCCCHHHHHH
Q 000099 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-----ks~~RLLLTGTPLQNnL~ELwS 1170 (2240)
.+...+......+ .+.++|+||++=+.-.. ..+...+..+ .....|.|++|--...+.+++.
T Consensus 201 ---------~~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 201 ---------KDGGDLQLALAEL--RNKHMVLIDTIGMSQRD-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ---------CCcccHHHHHHHh--cCCCEEEEcCCCCCccc-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 1111121112222 24689999998665322 2233333333 2345788999976666666543
No 366
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.86 E-value=6.8 Score=50.87 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=55.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|..+.|+|||..+-++...+.+... ...++.|....++..+...+.. +
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 200 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRN-----------N------------------ 200 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 578999999999998888777765321 2234444433343333333321 0
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCch---hHHHHHhhcc-ccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~---SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 201 -----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 201 -----TMEEFK---EKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred -----cHHHHH---HHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 011111 1222 47799999999986533 2344444443 23345777775
No 367
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=84.77 E-value=5.2 Score=54.60 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=70.7
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-CeEEEe-ch-----HHHHHHHHHHHHHCCCCeEEEEecchh
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-PHLIIV-PN-----AVLVNWKSELHKWLPSVSCIYYVGAKD 1086 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G-P~LIVV-P~-----SLL~QW~~Ef~Kw~PslkVvvy~Gskd 1086 (2240)
.+...+.-.|+--++|+|||.++...|+.-+....... .-.+|| |. +++....+|=..-.. .++.|. -
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g--~tvgy~---v 462 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG--ETCGYN---V 462 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc--cccccc---c
Confidence 33444666788899999999999888876554333222 112232 33 333333333211111 111111 1
Q ss_pred hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc----ccceEEEeecCC
Q 000099 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTP 1160 (2240)
Q Consensus 1087 eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L----ks~~RLLLTGTP 1160 (2240)
.+.. ......--++.+|.+.+.+.... -.....++|+||.|..--..--+...+..+ +.-+.+++++|=
T Consensus 463 Rf~S----a~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 463 RFDS----ATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred cccc----cccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 1100 11112234677888777654322 123567899999997643333344444444 333467888883
No 368
>PRK06921 hypothetical protein; Provisional
Probab=84.68 E-value=6.4 Score=47.90 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
+.+.+|..++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 456789999999999999888887765
No 369
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=84.67 E-value=2.4 Score=44.21 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=22.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (2240)
||.-+.|+|||..+-.++.++ .-+++.|....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 678899999998876666543 1345555555554
No 370
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.66 E-value=4.9 Score=53.14 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+.++ ...||..+.|+|||..+-.+...+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444433333 34689999999999999888776653
No 371
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.26 E-value=5 Score=53.26 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCC-C-Ce-EEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK-L-NG-ILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~-l-nG-ILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+..+...+..+ . +. |+..+.|+|||..+-.+...+.
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444444443332 2 33 8999999999988888777665
No 372
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.22 E-value=7.7 Score=50.47 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=25.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
.+|..+.|+|||..+-++..++.+... ...++.|..
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~ 168 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITS 168 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEH
Confidence 589999999999988887777665322 234555543
No 373
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.76 E-value=8.4 Score=41.23 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
+|.-+.|+|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 67788999999999888776654 34567776643
No 374
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.63 E-value=7.5 Score=49.69 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=54.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|..+.|+|||..+.++..++.+.. ....++.|.....+..+...+.. +
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 188 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRN-----------N------------------ 188 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 47999999999999988887776532 12344554332222222222210 0
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCch---hHHHHHhhcc-ccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~---SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 189 -----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 189 -----KMEEFK---EKYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred -----CHHHHH---HHHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 111121 1121 36799999999986542 2344445443 33456778876
No 375
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=83.51 E-value=4.4 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-|+..+.|+|||..+.++...+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 478999999999999888776654
No 376
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.43 E-value=8.4 Score=50.27 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=55.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|..++|+|||..+-++..++..... ...++.|....++......+..-.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~---------------------------- 194 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTH---------------------------- 194 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhh----------------------------
Confidence 468999999999888777666654322 234555554444433333332100
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCch---hHHHHHhhccc-cceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~---SKlskaLk~Lk-s~~RLLLTGT 1159 (2240)
..++.+ ...+ ...++|||||.|.+.+.. ..++..+..+. ....++||+.
T Consensus 195 ----~~~~~~---~~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 ----KEIEQF---KNEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ----hHHHHH---HHHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 001111 1122 257899999999987532 23444555443 3346888854
No 377
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.15 E-value=6.1 Score=46.22 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
..+.+|..+.|+|||..+.++...+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44579999999999988877665544
No 378
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.15 E-value=6.8 Score=53.61 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=74.4
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
..+||......++......|.++||.+.....+..+.+.|... |..+..++|+++..+|.+...+...++.+ |+++
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 4589999888787777778999999999999988877777653 78899999999999998888887765544 6677
Q ss_pred cccccccCCCCCCCeEEEcCC
Q 000099 1404 IRAAGRGLNLQSADTVIIYDP 1424 (2240)
Q Consensus 1404 TrAGGeGLNLQaADtVIifD~ 1424 (2240)
|+.+- =+.+.....||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 76433 255667777776653
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=83.14 E-value=10 Score=47.90 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=28.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech----HHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN----AVLVNWKSE 1068 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~----SLL~QW~~E 1068 (2240)
-.++....|+|||.++..+..++.. .+ ..++||... ....||..-
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~-~g--~~V~li~~Dt~R~~a~eqL~~~ 190 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKK-NG--FSVVIAAGDTFRAGAIEQLEEH 190 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-cC--CeEEEecCCcCcHHHHHHHHHH
Confidence 3578899999999988777766653 22 355555532 344555443
No 380
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.91 E-value=1.2 Score=50.33 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=27.1
Q ss_pred hcCCcEEEEcHHHHHHhhh--hc--cccCcceEecccccccCC
Q 000099 1098 ALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1098 ~~~fdVVITTYE~L~kD~s--~L--~kikWd~VIIDEAHrLKN 1136 (2240)
....+|||++|.+|..... .+ ....-.+|||||||+|-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4567999999999986532 22 223557899999999854
No 381
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.91 E-value=5.9 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-|++.+.|+|||..+.+++..+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 389999999999999888877764
No 382
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=82.81 E-value=13 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=18.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
.+.+|..+.|+|||..+.++...
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 45699999999999888665543
No 383
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=82.80 E-value=4.6 Score=50.73 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-~Ps 1075 (2240)
.++|+|....+.+...+..+. ++ |++.+-|+||+..+.++..+++-..+..+...=.|+.. .-|... -|+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC------~~~~~g~HPD 75 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGC------QLMQAGTHPD 75 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH------HHHHcCCCCC
Confidence 478888888888888776543 23 68999999999999999988875332211111123322 111111 255
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhc----cccCcceEecccccccCC-chhHHHHHhhcccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks 1150 (2240)
+..+.-.++.. ..+.+.++.-...+ ..-.|+++|||+|++|.. ....+.+.|..=..
T Consensus 76 ~~~i~p~~~~~------------------~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (334)
T PRK07993 76 YYTLTPEKGKS------------------SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPE 137 (334)
T ss_pred EEEEecccccc------------------cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCC
Confidence 44332221100 01111222111111 113789999999999953 33445555555444
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
...++|+++=
T Consensus 138 ~t~fiL~t~~ 147 (334)
T PRK07993 138 NTWFFLACRE 147 (334)
T ss_pred CeEEEEEECC
Confidence 5566666553
No 384
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=82.76 E-value=5.9 Score=53.61 Aligned_cols=149 Identities=12% Similarity=0.161 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH----HHHHHH-----HH
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN----WKSELH-----KW 1072 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~Q----W~~Ef~-----Kw 1072 (2240)
|+=..-|+.++..|.++...++++ =|.|||..+..++.++....+ ..++|.+|.. +... -..-+. .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 344555788888898888877776 799999988877777664332 4688888832 2222 111222 57
Q ss_pred CCCCe-EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc-c
Q 000099 1073 LPSVS-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (2240)
Q Consensus 1073 ~Pslk-Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk-s 1150 (2240)
+|... ++...|+...-.-........+...+.+.+. ..+......+++||||||+-+.. ..+...+-.+. .
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ar-----s~~s~RG~~~DLLIVDEAAfI~~--~~l~aIlP~l~~~ 321 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLAS-----SPNAARGQNPDLVIVDEAAFVNP--GALLSVLPLMAVK 321 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEecc-----cCCCcCCCCCCEEEEECcccCCH--HHHHHHHHHHccC
Confidence 77553 2323332211000000000001112222221 12334445789999999999965 23333332332 3
Q ss_pred ceEEEeecCCC
Q 000099 1151 QRRLLLTGTPL 1161 (2240)
Q Consensus 1151 ~~RLLLTGTPL 1161 (2240)
...+++.-||.
T Consensus 322 ~~k~IiISS~~ 332 (752)
T PHA03333 322 GTKQIHISSPV 332 (752)
T ss_pred CCceEEEeCCC
Confidence 45666666664
No 385
>PRK06893 DNA replication initiation factor; Validated
Probab=82.55 E-value=8.3 Score=45.66 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.+|..+.|+|||-.+.++...+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999888777766654
No 386
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=82.51 E-value=9 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=18.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|++.+.|+|||..+-.+...+..
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 77999999999988777766553
No 387
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.50 E-value=7.2 Score=54.42 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
..|.||..+.|+|||..+-++...+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44679999999999998877765554
No 388
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=82.24 E-value=2.3 Score=50.97 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHHH-HHHHHHHHCCCCeE
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLVN-WKSELHKWLPSVSC 1078 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~Q-W~~Ef~Kw~PslkV 1078 (2240)
|-+-|..+|.+ . ..+.++-..-|+|||.+.+.-+.+++... .....+|+|+.+....+ -...+...++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 45678888877 2 34456666699999999999999998755 34567999998775322 3333333210000
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEeccccc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1132 (2240)
.....+. .+. ........+.|.|+..+.... .....+.-.+-|+|+..
T Consensus 74 --~~~~~~~--~~~--~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 --QESSDNE--RLR--RQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --HCCTT-H--HHH--HHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --ccccccc--ccc--ccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000000 010 111223468888988776531 22222344566777665
No 389
>PRK05642 DNA replication initiation factor; Validated
Probab=82.13 E-value=10 Score=45.24 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=25.4
Q ss_pred CcceEecccccccCCch---hHHHHHhhccc-cceEEEeecC
Q 000099 1122 DWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1159 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~---SKlskaLk~Lk-s~~RLLLTGT 1159 (2240)
..++||||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 34789999999885432 33555555543 3567888887
No 390
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=81.91 E-value=9.5 Score=51.44 Aligned_cols=98 Identities=14% Similarity=0.245 Sum_probs=56.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|....|+|||-.+.++..++..... ...++.|.-..++..+...+.. +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~-g~~V~Yitaeef~~el~~al~~-----------~------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYP-GTRVRYVSSEEFTNEFINSIRD-----------G------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHHHHHHHHHHHHh-----------c------------------
Confidence 578999999999888887777664222 2344555434444444333321 0
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCch---hHHHHHhhcccc-ceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYRC-QRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~---SKlskaLk~Lks-~~RLLLTGT 1159 (2240)
.++.|. ..+. ..++||||+.|.+.+.. ..++..+..+.. ...|++|+.
T Consensus 367 -----~~~~f~---~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 367 -----KGDSFR---RRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred -----cHHHHH---HHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 011111 1122 46899999999997643 335555555433 355777765
No 391
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=81.86 E-value=7.8 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-||..+.|+|||..+..++..+..
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999888887764
No 392
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=81.28 E-value=2.5 Score=47.33 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=34.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
.+|+.+.|+|||..++.++..... ...++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHHc
Confidence 478899999999999988877663 235788888755555555444443
No 393
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.04 E-value=5.1 Score=56.05 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|..-|.+++... +...|.||..+.|+|||..+=.+...+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 445577777643 3345679999999999988866665543
No 394
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.95 E-value=11 Score=47.75 Aligned_cols=44 Identities=32% Similarity=0.369 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHH-Hhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWML-SLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLl-sL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|+-+++-+.-.+ .... ...+.+|..+.|+|||..+-.++..+..
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 555555554443 2222 2356799999999999998888776654
No 395
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=80.78 E-value=5.1 Score=52.46 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHhh--------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLY--------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~--------~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (2240)
.+.+..+.+.|.+... ....+.||+...|+|||+.+-++...+ ..+++-|-...++..|.-|..+
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHH
Confidence 4445555555555322 234467999999999999987776522 2356655555899999988876
No 396
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=80.66 E-value=5.3 Score=50.04 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1046 (2240)
++|++....+.+...+..+. ++ |+..+.|+||+..+.++..+++-.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 57888888877877776543 34 688999999999999999888753
No 397
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=80.64 E-value=5.3 Score=48.45 Aligned_cols=110 Identities=23% Similarity=0.220 Sum_probs=56.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH------HHHHHHHHHHCCCCeEEEEecchhhHhHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL------VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL------~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~q 1094 (2240)
-+.++.++|+|||+..=+++..+- ....++|+.|+.++ .-|..++.- -|... + ...+.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~~~--~-------~~~~e-- 116 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLES-QPKVN--V-------NAVLE-- 116 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhcc-Cccch--h-------HHHHH--
Confidence 457889999999998874443332 22344567776544 336666543 11000 0 00000
Q ss_pred HHhhcCCcEEEEcHHHHHHhhhhcccc-CcceEecccccccCCchhHHHHHhhcc----ccceEEEeecCC
Q 000099 1095 EVAALKFNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTP 1160 (2240)
Q Consensus 1095 ei~~~~fdVVITTYE~L~kD~s~L~ki-kWd~VIIDEAHrLKN~~SKlskaLk~L----ks~~RLLLTGTP 1160 (2240)
..-..-...+.+- +..+++|||+|.+....-...+.+..+ ...-+++|-|-|
T Consensus 117 --------------~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 117 --------------QIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred --------------HHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 0000011222223 347899999999865443333333333 333468888887
No 398
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=80.63 E-value=9.4 Score=45.83 Aligned_cols=41 Identities=34% Similarity=0.547 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHH
Q 000099 1028 MGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHK 1071 (2240)
Q Consensus 1028 MGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~Ef~K 1071 (2240)
=|.|||-.+++|...+.. ++ ++++||= |+.-+..|.+-..+
T Consensus 11 GGaGKTT~~~~LAs~la~-~G--~~V~lIDaDpn~pl~~W~~~a~~ 53 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAA-RG--ARVALIDADPNQPLAKWAENAQR 53 (231)
T ss_pred CCCcHHHHHHHHHHHHHH-CC--CeEEEEeCCCCCcHHHHHHhccc
Confidence 389999999888887765 22 3555554 77778899765544
No 399
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=80.59 E-value=5 Score=50.62 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lle~ 1046 (2240)
++|+|...-+.+..+.+.-.++ |+..+.|+|||..+..+...|...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5788888877777764333334 678999999999999998888753
No 400
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=80.53 E-value=7.1 Score=48.88 Aligned_cols=146 Identities=14% Similarity=0.046 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-~Ps 1075 (2240)
.++|+|....+.+...+..+. .-|+..+.|+||+..+..+..+++-.....++ .=.|+. +.-+... .|+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~-Cg~C~s------C~~~~~g~HPD 75 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEA-CGFCHS------CELMQSGNHPD 75 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCHH------HHHHHcCCCCC
Confidence 478888888888887765443 23788999999999999998888753321111 001211 1111111 244
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhc----cccCcceEecccccccCC-chhHHHHHhhcccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks 1150 (2240)
+.++.-.+... . .+.+.++.-...+ ..-.|+++|||+||+|.. ....+.++|..=..
T Consensus 76 ~~~i~p~~~~~---~---------------I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 76 LHVIKPEKEGK---S---------------ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEEecCcCCC---c---------------CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 43332111000 0 1112222111111 123689999999999953 33445566666555
Q ss_pred ceEEEeecCCCCCCHHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwS 1170 (2240)
...++|+++-...-+.-+.|
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CeEEEEEECChhhChHHHHh
Confidence 55666666543343444444
No 401
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=80.19 E-value=9.6 Score=54.04 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=71.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
+..|-+-|.++|..++.- +.-.+|.-.-|+|||.+. ..+..+++.. ...+++++|+.....-..+ -.
T Consensus 344 g~~Ls~eQr~Av~~il~s---~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e---~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTDG---RDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEG---GS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhcC---CCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhh---cc----
Confidence 347999999999887741 223688889999999864 4444444432 2367888887754432211 00
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHH--hhhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEE
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~k--D~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RL 1154 (2240)
|... .|...+.. ..........++|||||+--+-. ..+...|... ....+|
T Consensus 411 -----Gi~a-------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~--~~m~~LL~~a~~~garv 464 (988)
T PRK13889 411 -----GIAS-------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT--RQLERVLSHAADAGAKV 464 (988)
T ss_pred -----Ccch-------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH--HHHHHHHHhhhhCCCEE
Confidence 1000 01111100 00011123568999999997743 2333444333 456799
Q ss_pred EeecCCCCC
Q 000099 1155 LLTGTPLQN 1163 (2240)
Q Consensus 1155 LLTGTPLQN 1163 (2240)
+|.|=|-|-
T Consensus 465 VLVGD~~QL 473 (988)
T PRK13889 465 VLVGDPQQL 473 (988)
T ss_pred EEECCHHHc
Confidence 999987543
No 402
>PRK12377 putative replication protein; Provisional
Probab=79.99 E-value=11 Score=45.73 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (2240)
.+.+|..++|+|||-.+.++...+.. .+ ..++++.-..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~-~g--~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA-KG--RSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cC--CCeEEEEHHHHHHH
Confidence 45689999999999999999888874 22 23444443344443
No 403
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=79.50 E-value=8.1 Score=49.28 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=56.5
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecc
Q 000099 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084 (2240)
Q Consensus 1006 leGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~Gs 1084 (2240)
..+++.++. -+..+.-.+|.-++|.|||..++.++..+.. ..+++|+|.-.....+......++.-..
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs~~qi~~Ra~rlg~~~-------- 136 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEESPEQIKLRADRLGIST-------- 136 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcCHHHHHHHHHHcCCCc--------
Confidence 445666653 1112223478999999999988888766653 2357888875444444443333321000
Q ss_pred hhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccC
Q 000099 1085 KDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1085 kdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLK 1135 (2240)
-++.+.....+..-...+...+.++||||+.+.+.
T Consensus 137 ----------------~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 ----------------ENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ----------------ccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 01122211111111223345578999999998874
No 404
>PRK04195 replication factor C large subunit; Provisional
Probab=79.49 E-value=9 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
....||..+.|+|||..+-+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999887666543
No 405
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=79.13 E-value=13 Score=50.06 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+.++ .+ -|+..+.|+|||..|.++...+..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444444444332 22 378999999999999888877754
No 406
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=79.10 E-value=1.6 Score=60.09 Aligned_cols=111 Identities=23% Similarity=0.301 Sum_probs=75.8
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HH----HHHHHHHHHHCCCCeEEEEecchhhHh
Q 000099 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VL----VNWKSELHKWLPSVSCIYYVGAKDQRS 1089 (2240)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL----~QW~~Ef~Kw~PslkVvvy~GskdeRk 1089 (2240)
+|.-..+.++.+.+|.|||+.+-..+.+.+...+. +.+++|+|.. ++ ..|...+. .++++++-..|....-
T Consensus 939 ~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd- 1014 (1230)
T KOG0952|consen 939 LYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD- 1014 (1230)
T ss_pred EeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC-
Confidence 44456677899999999999987777666654444 7899999964 43 34765544 3578888777754321
Q ss_pred HHHHHHHhhcCCcEEEEcHHHHHHhh------hhccccCcceEecccccccCC
Q 000099 1090 RLFSQEVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1090 ~l~~qei~~~~fdVVITTYE~L~kD~------s~L~kikWd~VIIDEAHrLKN 1136 (2240)
-......+++|||++...... ..+ ..+..+|+||.|.++.
T Consensus 1015 -----~~~v~~~~~~ittpek~dgi~Rsw~~r~~v--~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1015 -----VKAVREADIVITTPEKWDGISRSWQTRKYV--QSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred -----hhheecCceEEcccccccCccccccchhhh--ccccceeecccccccC
Confidence 122356789999998764321 222 1467799999999865
No 407
>PRK09183 transposase/IS protein; Provisional
Probab=78.99 E-value=9.6 Score=46.22 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
.+.+.+|..+.|+|||..+.++...+.. .+ ..++++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~-~G--~~v~~~~ 137 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR-AG--IKVRFTT 137 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEe
Confidence 4677899999999999999888655443 22 3455554
No 408
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=78.91 E-value=7.5 Score=54.50 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|..-|.+++.... ...|.||..+.|+|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3445777776443 345679999999999998877766554
No 409
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=78.23 E-value=11 Score=51.54 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=71.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHH----HHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI----LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDi----Led~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
..|||..+..-.+......|.++||.+.....+.- +..+|...|+++..++|+++..+|.++++....++.+ |
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~--I- 367 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD--I- 367 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC--E-
Confidence 35888876554444445678899999999877654 4555556689999999999999999999999865554 4
Q ss_pred EEecc-cccccCCCCCCCeEEEcCCC
Q 000099 1401 LLSIR-AAGRGLNLQSADTVIIYDPD 1425 (2240)
Q Consensus 1401 LLSTr-AGGeGLNLQaADtVIifD~p 1425 (2240)
|++|. .....+.+.....||+=..+
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EEchHHHhcccchhcccceEEEechh
Confidence 44544 45556778888887764443
No 410
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=78.15 E-value=5.1 Score=50.66 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~ 1063 (2240)
+|-+-|..++.+++..+. .+.+..|-..-|+|||...=+++.++.. ....+++++|+.+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHHH
Confidence 366789999999876664 4455578899999999888777766543 345788888887644
No 411
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.96 E-value=11 Score=51.09 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCC-C-C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK-L-N-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~-l-n-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+.++ . + -|+..+.|+|||..|..+...+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 555666666555443 2 2 478999999999999888776653
No 412
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=77.92 E-value=6.7 Score=49.58 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
...|.+|..+.|+|||+.|-++.... ..+++=|-=..+...|.-|-.|.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHHH
Confidence 56778999999999999887765321 12333333334455676555543
No 413
>PRK10865 protein disaggregation chaperone; Provisional
Probab=77.26 E-value=7.1 Score=54.73 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|..-|..++... ....|.||..+.|+|||..+-++...+.
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 334477777633 3445779999999999998877766554
No 414
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=77.05 E-value=10 Score=52.22 Aligned_cols=28 Identities=36% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
...|.||..+.|+|||..+-++...+..
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457799999999999998777766654
No 415
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.96 E-value=7 Score=50.96 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=53.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|..+.|+|||-.+-++..++... ..+++.|....+.......+.. +
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~~~~~~~l~~-----------~------------------ 191 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFTEHLVSAIRS-----------G------------------ 191 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHHHHHHHHHhc-----------c------------------
Confidence 5789999999999888877777642 2345555433332222222210 0
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCchh---HHHHHhhcc-ccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~L-ks~~RLLLTGT 1159 (2240)
..+.+. ..+ ...++|||||.|.+.+... .++..+..+ .....+++|++
T Consensus 192 -----~~~~f~---~~~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 192 -----EMQRFR---QFY--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred -----hHHHHH---HHc--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 001111 111 2578999999999965322 344444433 23457888885
No 416
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=76.84 E-value=8.9 Score=49.66 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHHhCCCCCeEEEechHHHHH
Q 000099 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEFKGNYGPHLIIVPNAVLVN 1064 (2240)
Q Consensus 1004 YQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~kg~~GP~LIVVP~SLL~Q 1064 (2240)
-++..|..++.+..++.|.|+..+.|+|||-.+.++-.+ .+. .+ ..+++..|+.+
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~-sG-----~f~T~a~Lf~~ 249 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILI-SG-----GTITVAKLFYN 249 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHH-cC-----CcCcHHHHHHH
Confidence 445556666666778999999999999999888876655 232 22 44555555544
No 417
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.75 E-value=53 Score=40.52 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=81.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec----hHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP----NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP----~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~q 1094 (2240)
+....|....|+|||..+..+...+.. ....+.+|.- ...+.+|...... +
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~----~------------------ 129 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKT----I------------------ 129 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhh----c------------------
Confidence 345678889999999887666655542 2234555553 2356667643332 1
Q ss_pred HHhhcCCcEEE-EcHHHHHHhhhhccc-cCcceEecccccccCCchhHHH---HHhhcccc-ceEEEeecCCCCCCHHHH
Q 000099 1095 EVAALKFNVLV-TTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRESVLA---RDLDRYRC-QRRLLLTGTPLQNDLKEL 1168 (2240)
Q Consensus 1095 ei~~~~fdVVI-TTYE~L~kD~s~L~k-ikWd~VIIDEAHrLKN~~SKls---kaLk~Lks-~~RLLLTGTPLQNnL~EL 1168 (2240)
.+.++. .+...+......+.. .++++||||-+=+.-+....+. ..+..... ...|.|++|--.+...+.
T Consensus 130 -----~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 130 -----GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -----CceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 122221 122223222233332 3689999998876633222222 22222223 235668888767777777
Q ss_pred HHHHhhhccc-----------ccCChHHHHhhhcCCcccCCCCCC
Q 000099 1169 WSLLNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHN 1202 (2240)
Q Consensus 1169 wSLLnFLlP~-----------iF~S~~sF~e~F~kPf~~~g~~~~ 1202 (2240)
...|+-+.+. .++..-.+...+..|+...+....
T Consensus 205 ~~~f~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~~it~Gq~ 249 (270)
T PRK06731 205 ITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 249 (270)
T ss_pred HHHhCCCCCCEEEEEeecCCCCccHHHHHHHHHCcCEEEEeCCCC
Confidence 6666654332 123344555566777765544433
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.60 E-value=7.4 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=16.8
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (2240)
+.||..+.|+|||..+-++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568999999999977765543
No 419
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=76.54 E-value=16 Score=45.34 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=19.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-||..+.|+|||..+..+...+..
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 378999999999888887776653
No 420
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=76.24 E-value=8.2 Score=52.94 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=44.2
Q ss_pred ccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 1985 ILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 1985 PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
++|...|.-.....+ -.|...+.+||.--++++--..-.+..|...|+...+..+.
T Consensus 635 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (725)
T PRK07133 635 EIDELIIKLNKNNYK----VNFQNFLEKIFGGPKHIFAISKKLINEAKIYWKAINNTKKS 690 (725)
T ss_pred chHHHHHHHHHhhHH----HHHHHHHHHHhCCcceEeeccHHHHHHHHHHHHHHHhhccc
Confidence 677666654443333 45788899999999999999999999999999998886543
No 421
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=76.08 E-value=8 Score=44.58 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=37.2
Q ss_pred hhhccccCcceEecccccccCC----chhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhh
Q 000099 1115 RSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL 1174 (2240)
Q Consensus 1115 ~s~L~kikWd~VIIDEAHrLKN----~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnF 1174 (2240)
...+..-.|++||+||.-.+.+ ....+...|..-....-|+|||.-. ..+|..+-++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~ 150 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELADL 150 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCce
Confidence 4556667899999999876544 2334555565555556899999844 4555554443
No 422
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.02 E-value=24 Score=47.19 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=25.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
+...+|...+|.|||..+..|+..+... +....+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEe
Confidence 4445677899999999988877766542 2223455554
No 423
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=75.52 E-value=25 Score=48.47 Aligned_cols=179 Identities=18% Similarity=0.146 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-HHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-LHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E-f~Kw~--Psl 1076 (2240)
.|-+||...+.-++. ..++++...-|||=--.++.++..+ -.. ..|++|=+ ...|..+ |.... +.+
T Consensus 13 ~lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~----s~~-~sL~LvLN--~~~~ee~~f~s~lk~~~~ 81 (892)
T KOG0442|consen 13 ALLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILF----SPP-GSLVLVLN--TQEAEEEYFSSKLKEPLV 81 (892)
T ss_pred ccchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHh----CCc-cceEEEec--CchhhHHHHHHhcCcCCC
Confidence 378899998877763 4455777778999655444443322 222 23444433 3335554 11111 111
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHhhccccce--
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-- 1152 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~-- 1152 (2240)
..+.-.-+.+.|..+ ...-.|+++|--.|..|. ..+.-.+...|+|+=||.+.+. +.-+-+|+-|+.+.
T Consensus 82 t~~~s~ls~~~R~~~------Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~et-s~eaFIlRl~R~knk~ 154 (892)
T KOG0442|consen 82 TEDPSELSVNKRRSK------YLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISET-SQEAFILRLYRSKNKT 154 (892)
T ss_pred ccChhhcchhhhHHh------hhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhc-chhHHHHHHHHHhcCC
Confidence 111111122333322 223356666655555442 2333346788999999999763 44444455554333
Q ss_pred --EEEeecCCCC--CCHHHHHHHHhhhcccccCChHHHHhhhcCCccc
Q 000099 1153 --RLLLTGTPLQ--NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQK 1196 (2240)
Q Consensus 1153 --RLLLTGTPLQ--NnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~ 1196 (2240)
.=++|--|.. ..+.-+-..+.+|.-.-.-.+..|...+..++..
T Consensus 155 gfIkAFsd~P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~ 202 (892)
T KOG0442|consen 155 GFIKAFSDSPESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQ 202 (892)
T ss_pred cceeccccCchhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhcc
Confidence 3344555422 2223333334433222222344555555544443
No 424
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=75.32 E-value=17 Score=47.53 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCC-C-C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK-L-N-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~-l-n-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+.++...+..+ . + -|+..+.|+|||..+.+++.++..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 555666666655443 2 3 378999999999999888877764
No 425
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=75.31 E-value=11 Score=45.02 Aligned_cols=48 Identities=19% Similarity=-0.009 Sum_probs=32.2
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1009 LqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
|+.++.-+..+.-.+|+..+|+|||..++.++..+.... ..++|++.-
T Consensus 20 Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~ 67 (271)
T cd01122 20 LNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL 67 (271)
T ss_pred eeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc
Confidence 334333333444568999999999999988887776422 246777764
No 426
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.10 E-value=14 Score=47.17 Aligned_cols=50 Identities=28% Similarity=0.258 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHH-hhc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC
Q 000099 1000 TLRDYQIVGLQWMLS-LYN--NKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049 (2240)
Q Consensus 1000 tLRPYQleGLqwLls-L~~--n~lnGILADEMGLGKTIQAIALIa~Lle~kg~ 1049 (2240)
.-|+-|+.-+...+. .+. ...|.++...+|+|||.++-.++..+.+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~ 72 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSAN 72 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc
Confidence 356777776654443 222 23457999999999999987777777664333
No 427
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=74.57 E-value=11 Score=44.26 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=28.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
+.-.+|+..+|+|||..++.++..+.... ..++|++.-
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 33358999999999999998887776532 347888883
No 428
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.05 E-value=12 Score=43.90 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHH--HHHHCCCCeEEEEecchhhHhHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSE--LHKWLPSVSCIYYVGAKDQRSRLFSQE 1095 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW-~~E--f~Kw~PslkVvvy~GskdeRk~l~~qe 1095 (2240)
..+.++.-..|.|||-.++++...... ...+++||==. -..| .-| +.+.++.+.+..+..+-.-...-....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQFl--Kg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQFI--KGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEe--cCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH
Confidence 456688899999999999998877664 23355555310 0112 112 222233333332211100000000000
Q ss_pred HhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC----chhHHHHHhhccccceEEEeecCCCCCCHHHHHHH
Q 000099 1096 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSL 1171 (2240)
Q Consensus 1096 i~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN----~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSL 1171 (2240)
.. .-.+.+..-...+..-.|++||+||.=.+.+ ....+...|..-....-|+|||-- -..+|..+
T Consensus 97 ~~--------~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~---~p~~Lie~ 165 (191)
T PRK05986 97 IA--------AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG---APRELIEA 165 (191)
T ss_pred HH--------HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHh
Confidence 00 0001122234556667899999999876654 234455555554555689999974 44555544
Q ss_pred Hhh
Q 000099 1172 LNL 1174 (2240)
Q Consensus 1172 LnF 1174 (2240)
.++
T Consensus 166 ADl 168 (191)
T PRK05986 166 ADL 168 (191)
T ss_pred Cch
Confidence 443
No 429
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=74.04 E-value=16 Score=47.78 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
...+++..+|+|||.++..+..++..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34578999999999999888877664
No 430
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=73.32 E-value=18 Score=45.70 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=25.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (2240)
..+.+|..+.|+|||..+-++...+ ..+++-|+...++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVRK 195 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchHHHHHH
Confidence 3457999999999998887665432 234555554444433
No 431
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=73.24 E-value=11 Score=51.29 Aligned_cols=105 Identities=18% Similarity=0.194 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEec-hHHHHHHHHHHHHHCCCCeE
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVP-NAVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP-~SLL~QW~~Ef~Kw~PslkV 1078 (2240)
|-|-|.++|.+- ..+.++....|+|||.+.+.-|.+++...+ ....+|+|+. ......-...+.+.++.
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~--- 72 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGK--- 72 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCc---
Confidence 678898887642 335666677999999999999999997433 3345777765 44444455555443310
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhc--cccCcceEecccccc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKL--SKVDWKYIIIDEAQR 1133 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L--~kikWd~VIIDEAHr 1133 (2240)
.....|.|.|+..|.... ... ..+.-.+-|+|+...
T Consensus 73 -------------------~~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 73 -------------------GEARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred -------------------cccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 112367888988886542 111 112334567787643
No 432
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=73.17 E-value=14 Score=50.90 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=65.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHH-HHHHHHHHHHHCCCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAV-LVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SL-L~QW~~Ef~Kw~Pslk 1077 (2240)
.|-|-|.++|.+- ....++....|+|||.+.+.-|++|++..+ ....+|+|+-+.- ...-...+.+.++
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~--- 74 (715)
T TIGR01075 4 GLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG--- 74 (715)
T ss_pred ccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc---
Confidence 4889999998632 235567777999999999999999997533 3456888887553 3333333443321
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEecccccc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQR 1133 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHr 1133 (2240)
.....+.|.|+..+.... .......-.+.|+|+...
T Consensus 75 --------------------~~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 114 (715)
T TIGR01075 75 --------------------TSARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQ 114 (715)
T ss_pred --------------------ccccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 011257889988776431 111122334667887643
No 433
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=72.98 E-value=24 Score=45.66 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=27.6
Q ss_pred CcceEecccccccCCc---hhHHHHHhhccc-cceEEEeec--CC
Q 000099 1122 DWKYIIIDEAQRMKDR---ESVLARDLDRYR-CQRRLLLTG--TP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~---~SKlskaLk~Lk-s~~RLLLTG--TP 1160 (2240)
..++++||..+.+.+. .-.+...+..+. ....|+||+ +|
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P 219 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPP 219 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 6789999999998765 334555555553 334888998 56
No 434
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.85 E-value=35 Score=44.57 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=80.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe-c-hHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV-P-NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV-P-~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~ 1099 (2240)
.++.-..|+|||.++..++..+....+ ..++||. - -.....| .+..|+....
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~e--QLk~yAe~lg---------------------- 279 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIE--QLKRYADTMG---------------------- 279 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHH--HHHHHHHhcC----------------------
Confidence 467889999999999888865532222 2444444 2 2233444 3333321111
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhH---HHHHhhcc----ccceEEEeecCCCCCCHHHHHHHH
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY----RCQRRLLLTGTPLQNDLKELWSLL 1172 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SK---lskaLk~L----ks~~RLLLTGTPLQNnL~ELwSLL 1172 (2240)
..++ +...+..-...+....+++||||=+-+.-..... +...+... .....|.|++|--++.+.+....+
T Consensus 280 -vp~~--~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 280 -MPFY--PVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred -CCee--ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 1111 1111111122333457899999977665322222 22222222 224578899997777777777766
Q ss_pred hhhccc-----------ccCChHHHHhhhcCCcccCCCCCCCC
Q 000099 1173 NLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNAD 1204 (2240)
Q Consensus 1173 nFLlP~-----------iF~S~~sF~e~F~kPf~~~g~~~~~e 1204 (2240)
..+.+. -++..-.+...+..|+...+......
T Consensus 357 ~~~~~~glIlTKLDEt~~~G~il~i~~~~~lPI~ylt~GQ~VP 399 (432)
T PRK12724 357 ESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEVP 399 (432)
T ss_pred cCCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCC
Confidence 665442 13444455666778877655444433
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.30 E-value=22 Score=46.99 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKG 1048 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg 1048 (2240)
.+|...+|.|||.++..|..++....+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 367889999999988777776654333
No 436
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=71.65 E-value=1.5e+02 Score=38.79 Aligned_cols=132 Identities=22% Similarity=0.262 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhh
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~ 1098 (2240)
+....|..+||.|||-+..-|.+.+....+. ..+=||+-.+-----...|..++ ++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya---------------------~im~ 260 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYA---------------------DIMG 260 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHH---------------------HHhC
Confidence 4445788999999998876666655522333 34444442211000111222211 1111
Q ss_pred cCCcEEEEcHHHHHHhhhhccccCcceEecccccc-cCCchhHHHHHhhcc-----ccceEEEeecCCCCCCHHHHHHHH
Q 000099 1099 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQR-MKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLL 1172 (2240)
Q Consensus 1099 ~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHr-LKN~~SKlskaLk~L-----ks~~RLLLTGTPLQNnL~ELwSLL 1172 (2240)
..+ .++.+..-|......|. ++++|.||=+-+ -++. . ....|..| ....-|.|++|-=..++.+++..|
T Consensus 261 vp~-~vv~~~~el~~ai~~l~--~~d~ILVDTaGrs~~D~-~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 261 VPL-EVVYSPKELAEAIEALR--DCDVILVDTAGRSQYDK-E-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred Cce-EEecCHHHHHHHHHHhh--cCCEEEEeCCCCCccCH-H-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 111 23334444444434443 358888996544 2221 1 11222222 344578899998888888988888
Q ss_pred hhhcc
Q 000099 1173 NLLLP 1177 (2240)
Q Consensus 1173 nFLlP 1177 (2240)
.++..
T Consensus 336 ~~~~i 340 (407)
T COG1419 336 SLFPI 340 (407)
T ss_pred ccCCc
Confidence 87754
No 437
>PRK04132 replication factor C small subunit; Provisional
Probab=71.45 E-value=11 Score=52.62 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=34.6
Q ss_pred CcceEecccccccCC-chhHHHHHhhccccceEEEeecCCCCCCHHHHHH
Q 000099 1122 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwS 1170 (2240)
++.+|||||+|+|-. ....+.+.+..+....+++|+.++...-+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 588999999999943 3345666666667778899998876554444443
No 438
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=71.20 E-value=11 Score=51.66 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=65.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHH-HHHHHHHHHCCCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLV-NWKSELHKWLPSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~-QW~~Ef~Kw~Pslk 1077 (2240)
.|-+-|.++|.+. ....++....|+|||.+.+.-|++|++..+ ....+|+|+-+.-.. .-...+.+.++.
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~-- 73 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGR-- 73 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCc--
Confidence 4778999998642 334566677999999999999999997533 345689999765432 233333332210
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEecccccc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQR 1133 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHr 1133 (2240)
...-.|.|.|+..+.... .....+.-.+.|+|+...
T Consensus 74 --------------------~~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 74 --------------------KEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred --------------------ccccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 011257889998876431 111112345677887653
No 439
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=71.14 E-value=33 Score=40.68 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=25.5
Q ss_pred CcceEecccccccCCch---hHHHHHhhcc-ccceEEEeec
Q 000099 1122 DWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTG 1158 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~---SKlskaLk~L-ks~~RLLLTG 1158 (2240)
..++||||..|.+.+.. ..++..+..+ .....+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 68999999999998753 2444455544 3445777776
No 440
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=70.99 E-value=15 Score=50.88 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=20.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
..|.||.-+.|+|||..+-++...+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45779999999999998877765544
No 441
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=69.93 E-value=23 Score=39.32 Aligned_cols=45 Identities=33% Similarity=0.330 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLMEF 1046 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Lle~ 1046 (2240)
|..|++-+.-++... ......+|..+.|+|||...-.++..+...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 455555555554311 234456899999999999888877776654
No 442
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=69.75 E-value=22 Score=40.16 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=35.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechHHHHHHHHHHHHHC
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNAVLVNWKSELHKWL 1073 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~SLL~QW~~Ef~Kw~ 1073 (2240)
+.-++++.+.|+|||..++.++..+.... ...+++|+|.......++.+-+..+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 33468899999999999999988877421 14568888887665556666665554
No 443
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=69.67 E-value=22 Score=48.29 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=69.4
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHH----HHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE----EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLe----d~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
..|||-.+..-.+......|.++||.+.....+.-+. .+|...|+++..++|+++..+|..+++....++.+ |+
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~--Ii 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH--LV 342 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC--EE
Confidence 4578887654333344557889999999887766554 44445589999999999999999999998865544 44
Q ss_pred EEecccccccCCCCCCCeEEEcCCC
Q 000099 1401 LLSIRAAGRGLNLQSADTVIIYDPD 1425 (2240)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifD~p 1425 (2240)
+.+....-..+.+.....||+=..+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 4444444556777788877764433
No 444
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=69.33 E-value=14 Score=51.02 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=64.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHH-HHHHHHHHHHCCCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVL-VNWKSELHKWLPSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL-~QW~~Ef~Kw~Pslk 1077 (2240)
.|-|-|.++|.+. ....++....|+|||.+.+.-|+||++..+ ....+|+|+-+.-. ..-...+.+.++
T Consensus 9 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~--- 79 (721)
T PRK11773 9 SLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG--- 79 (721)
T ss_pred hcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc---
Confidence 4889999998632 234566667999999999999999997433 33468888875533 223333333221
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEeccccc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1132 (2240)
.....+.|.|+..++... .......-.+.|+|+..
T Consensus 80 --------------------~~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 118 (721)
T PRK11773 80 --------------------TSQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDD 118 (721)
T ss_pred --------------------cCCCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 111257789988876531 11112233456788764
No 445
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=69.29 E-value=16 Score=44.93 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
+...+|+..+|+|||.++..++.++....+. ..+.||.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 3345788999999999998888877653222 3455554
No 446
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=68.97 E-value=22 Score=44.40 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|..++..+...+..+. .-|+..+.|+||+..+.+++.+++.
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5555666666554442 3488999999999999999988875
No 447
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=68.81 E-value=2.4e+02 Score=39.75 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=17.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~L 1043 (2240)
..+|..+.|+|||..+-++...+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999998776665443
No 448
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=68.75 E-value=24 Score=45.57 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
..+.+|..+.|+|||..+-++...+ ..+++.|....++..|.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKYL 220 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHhc
Confidence 4567999999999998886655322 23566666555544443
No 449
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.62 E-value=19 Score=47.97 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=20.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
..+.||.-++|+|||..+-++...+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45679999999999998877776553
No 450
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=68.47 E-value=4.6 Score=46.80 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=25.9
Q ss_pred cCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCCC
Q 000099 1121 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNn 1164 (2240)
..++++||||+..+-.. . +.- +........++|-|=|.|-.
T Consensus 61 ~~~~~liiDE~~~~~~g-~-l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPG-Y-LLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred CcCCEEEEeccccCChH-H-HHH-HHhhccCcceEEEECchhcc
Confidence 35899999999987431 1 111 33333334677779987765
No 451
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=68.05 E-value=33 Score=49.35 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkV 1078 (2240)
..|-+-|..+|..+.. .+.-++|...-|+|||.+.-+++ .+++.. ...++.++|+..... .+.+-+ ++.
T Consensus 380 ~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~-~~~e~~--G~~V~g~ApTgkAA~---~L~e~~-Gi~- 448 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAAR-EAWEAA--GYRVVGGALAGKAAE---GLEKEA-GIQ- 448 (1102)
T ss_pred CCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHH-HHHHHc--CCeEEEEcCcHHHHH---HHHHhh-CCC-
Confidence 4799999999987642 23346788889999997775554 344333 246778888764432 222211 010
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHH-HHh-hhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEEE
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-MYD-RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1155 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L-~kD-~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RLL 1155 (2240)
-.|...+ ... .....-..-++||||||.-+-. ..+...|... ....+|+
T Consensus 449 --------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~--~~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 449 --------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS--RQMALFVEAVTRAGAKLV 500 (1102)
T ss_pred --------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEEE
Confidence 0111111 000 0000112356999999997732 2333444444 3567999
Q ss_pred eecCCCCCC
Q 000099 1156 LTGTPLQND 1164 (2240)
Q Consensus 1156 LTGTPLQNn 1164 (2240)
|.|-|-|-.
T Consensus 501 LVGD~~QL~ 509 (1102)
T PRK13826 501 LVGDPEQLQ 509 (1102)
T ss_pred EECCHHHcC
Confidence 999886543
No 452
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=68.03 E-value=29 Score=39.66 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=67.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH---HHHHHHHCCCCeEEEEecch----hhHhHHHHHH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW---KSELHKWLPSVSCIYYVGAK----DQRSRLFSQE 1095 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW---~~Ef~Kw~PslkVvvy~Gsk----deRk~l~~qe 1095 (2240)
.+.-..|.|||-.++++...... ...+++||==.. ..| ...+.+.+|++.+..+.... .........
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~---~g~~v~~vQFlK--g~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~- 79 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALG---HGYRVGVVQFLK--GGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA- 79 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEEeC--CCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH-
Confidence 45566799999999998877664 233555531000 002 12233334555444432210 000000000
Q ss_pred HhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC----chhHHHHHhhccccceEEEeecCCCCCCHHHHHHH
Q 000099 1096 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSL 1171 (2240)
Q Consensus 1096 i~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN----~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSL 1171 (2240)
....+..-...+....+++||+||.=.+.+ ....+...|..-....-++|||--. ..+|..+
T Consensus 80 -----------a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~---p~~l~e~ 145 (159)
T cd00561 80 -----------AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA---PKELIEA 145 (159)
T ss_pred -----------HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHh
Confidence 011222234455566899999999877643 2335555666555566899999744 4444444
Q ss_pred Hh
Q 000099 1172 LN 1173 (2240)
Q Consensus 1172 Ln 1173 (2240)
-+
T Consensus 146 AD 147 (159)
T cd00561 146 AD 147 (159)
T ss_pred Cc
Confidence 33
No 453
>PRK14873 primosome assembly protein PriA; Provisional
Probab=67.87 E-value=24 Score=48.47 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=73.7
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-C-ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-Q-LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-G-iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
.|||.+.+.+++......|+.+||...-......+...|+.+ | ..+..+|+.++..+|.+...+...++.. |+|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 589999999999999999999999999999888888888765 3 6788999999999999988888765555 6777
Q ss_pred cccccccCCCCCCCeEEEcC
Q 000099 1404 IRAAGRGLNLQSADTVIIYD 1423 (2240)
Q Consensus 1404 TrAGGeGLNLQaADtVIifD 1423 (2240)
|+.+-. +=+.+-..||+-|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 787543 2233334454443
No 454
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=66.90 E-value=15 Score=47.13 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
..+.||..+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVQKF 205 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHhHhh
Confidence 3457999999999998887665432 1355555544454443
No 455
>PRK11823 DNA repair protein RadA; Provisional
Probab=66.76 E-value=15 Score=47.93 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=39.6
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000099 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (2240)
Q Consensus 1006 leGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (2240)
..+++.++. -+..+.-.+|.-++|+|||..++.++..+.. ...++|+|.-.....++.....+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccccHHHHHHHHHH
Confidence 455666663 1122223478999999999998888776653 23577888765555555444443
No 456
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=66.51 E-value=59 Score=36.47 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.++..+.|+|||..+..++..+.+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 367789999999999888877664
No 457
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=66.20 E-value=19 Score=49.69 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=24.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (2240)
..+.+|..+.|+|||..+-++...+ ..+++.|....++
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i~ 249 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEIM 249 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHHh
Confidence 3566899999999997765554322 2345555544443
No 458
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.86 E-value=55 Score=44.71 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=26.1
Q ss_pred CcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.+.+|||||+|+|.. ....+.+.|.......+++|+.|-
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 688999999999943 222344555555555677777763
No 459
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=65.14 E-value=3.1e+02 Score=35.76 Aligned_cols=57 Identities=16% Similarity=0.018 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000099 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (2240)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (2240)
..+|..++.-+..+.-.+|+..+|.|||..++.++....... ..++|++...-...+
T Consensus 182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm~~~~ 238 (434)
T TIGR00665 182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEMSAEQ 238 (434)
T ss_pred chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcCCHHH
Confidence 344555543333333458999999999999988887765422 247888875433333
No 460
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.06 E-value=26 Score=44.86 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=33.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKW 1072 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw 1072 (2240)
.+.+++.+.|+|||+.|=|+... ++.+.+=|-. .|...|.-|=+|.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE-------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE-------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh-------hcCeEEEechhhhhhhhccchHHH
Confidence 45689999999999988777652 4556666654 4677898776653
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.69 E-value=31 Score=43.62 Aligned_cols=123 Identities=19% Similarity=0.295 Sum_probs=65.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecc--hhhHhHHHHHHHhhcC
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQEVAALK 1100 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~Gs--kdeRk~l~~qei~~~~ 1100 (2240)
++..--|+|||-+..-+..++.. . ...+||.+=-.--.--.+++.-|...+.+-++.+. .+.-.-
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~-~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaV---------- 209 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQ-Q--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAV---------- 209 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHH-C--CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHH----------
Confidence 56678899999877666655553 2 23455554333233345556666543333333321 111000
Q ss_pred CcEEEEcHHHHHHhhhhccccCcceEecccccccCCchh------HHHHHhhcc--ccceEEEe--ecCCCCCCHHHH
Q 000099 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES------VLARDLDRY--RCQRRLLL--TGTPLQNDLKEL 1168 (2240)
Q Consensus 1101 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~S------KlskaLk~L--ks~~RLLL--TGTPLQNnL~EL 1168 (2240)
-|+. ...-...++|+||||=|-|+-|... ++.+.+... .++|.++| =||-=||.+...
T Consensus 210 ------afDA----i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 210 ------AFDA----IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred ------HHHH----HHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 1111 2333345799999999999977443 334444433 23454444 577666665543
No 462
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=64.26 E-value=35 Score=44.89 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhc-CC----CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCC-eEEEechHHH-HHHHHHHHHHC--
Q 000099 1003 DYQIVGLQWMLSLYN-NK----LNGILADEMGLGKTVQVMALIAYLMEFKGNYGP-HLIIVPNAVL-VNWKSELHKWL-- 1073 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~-n~----lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP-~LIVVP~SLL-~QW~~Ef~Kw~-- 1073 (2240)
|+|.-.+..+.-... .+ ..++|.-.=|-|||..+.++.+|.+-..+..++ ++++++..-. ..-..++..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 567766665553311 11 124666678999999988887776654455554 5556664322 22223333332
Q ss_pred -CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHH----HHHHhhhhccccCcceEecccccccCCchhHHHHHhh
Q 000099 1074 -PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE----FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1074 -PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE----~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
|.+...... ++ .......|.....+ .+..+...+......++|+||.|.+++. .++.+|.
T Consensus 81 ~~~l~~~~~~-------~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~ 145 (477)
T PF03354_consen 81 SPELRKRKKP-------KI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDALE 145 (477)
T ss_pred Chhhccchhh-------hh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHHHH
Confidence 222211100 00 00001111111111 1123445566678899999999999863 3444444
No 463
>CHL00176 ftsH cell division protein; Validated
Probab=63.60 E-value=42 Score=45.97 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=18.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (2240)
..+.||..+.|+|||..+=++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999988876653
No 464
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=63.59 E-value=34 Score=50.93 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=41.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLV 1063 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SLL~ 1063 (2240)
.|-+-|.+++..++.-. ..-.+|.-.-|+|||.+.-+++..+... ......++.++|+.-..
T Consensus 835 ~Lt~~Qr~Av~~iLts~--dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 835 KLTSGQRAATRMILETS--DRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred ccCHHHHHHHHHHHhCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 68899999998877521 2346888889999998865554433221 12223577788976543
No 465
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=63.36 E-value=43 Score=50.47 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLV 1063 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~ 1063 (2240)
.|-+-|.+++..++.- ...-.+|...-|+|||.+.-+++..+.... .....++.++|+.-..
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 6889999999888751 123457888899999987765554433211 1223567788977543
No 466
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=63.36 E-value=34 Score=48.64 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=71.8
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh----cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~----rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
..+||..+....+-.....+.+|+|.+..+..+.-+.+.|.. .++.+..++|.++..++.++++.+..+..+ |+
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d--IV 558 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID--IL 558 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce--EE
Confidence 357898876655555556788999999999888776665554 467888999999999999999999865444 55
Q ss_pred EEecccccccCCCCCCCeEEEcCC
Q 000099 1401 LLSIRAAGRGLNLQSADTVIIYDP 1424 (2240)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifD~ 1424 (2240)
+.+.......+.+....+||+=.-
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeecc
Confidence 545555555677888888777433
No 467
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=63.26 E-value=17 Score=48.80 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=59.6
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-----HHHHHHHHHHHCCCCeEEEEecchhhHhHH
Q 000099 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-----LVNWKSELHKWLPSVSCIYYVGAKDQRSRL 1091 (2240)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-----L~QW~~Ef~Kw~PslkVvvy~GskdeRk~l 1091 (2240)
.++-.+.|. +=--|||...+.+|+.++..-.+ -.+..|+--.- .......+.+|+|.-.++-..++.-.
T Consensus 201 KQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~g-I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~---- 274 (668)
T PHA03372 201 KQKATVFLV-PRRHGKTWFIIPIISFLLKNIIG-ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS---- 274 (668)
T ss_pred hccceEEEe-cccCCceehHHHHHHHHHHhhcC-ceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE----
Confidence 333334333 45679999999999888863222 25677775332 33345567899987655332221100
Q ss_pred HHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC
Q 000099 1092 FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1092 ~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN 1136 (2240)
+ .....+..++..| ....+-+..-.|++|+|||||-++-
T Consensus 275 ~--s~pg~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 275 I--DHRGAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred E--ecCCCcceeeehh----hccCccccCCCCCEEEEehhhccCH
Confidence 0 0001111122222 1223445566899999999999973
No 468
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=63.25 E-value=2.4e+02 Score=38.69 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (2240)
..|.|||.+.|+|||+.|=|+...- + --|+-|-=..|+..|+-|=++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa----g--~NFisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA----G--ANFISVKGPELLNKYVGESER 591 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc----c--CceEeecCHHHHHHHhhhHHH
Confidence 4567999999999999887765321 1 134444445677778766554
No 469
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=63.16 E-value=19 Score=48.85 Aligned_cols=124 Identities=12% Similarity=0.110 Sum_probs=65.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH----HHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN----WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~Q----W~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~ 1097 (2240)
+++-+==-|||..+..+|+.++... ..-.+++++|.. +... -..-+++|++...+-...|.. . .+ ...
T Consensus 258 VflVPRR~GKTwivv~iI~~ll~s~-~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-I---~i--~f~ 330 (738)
T PHA03368 258 VFLVPRRHGKTWFLVPLIALALATF-RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-I---SF--SFP 330 (738)
T ss_pred EEEecccCCchhhHHHHHHHHHHhC-CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-E---EE--Eec
Confidence 4455567899998887777666432 234678888843 3333 334456787664433333310 0 00 011
Q ss_pred hcC-CcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc--ccceEEEeecC
Q 000099 1098 ALK-FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGT 1159 (2240)
Q Consensus 1098 ~~~-fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L--ks~~RLLLTGT 1159 (2240)
.+. ..+.+.|- +....+....+++||||||+.++. ..+...|-.+ .....|.+|-|
T Consensus 331 nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~--~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 331 DGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP--DAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred CCCccEEEEEec----cCCCCccCCcccEEEEechhhCCH--HHHHHHHHHHhccCccEEEEecC
Confidence 111 13333311 233445666899999999999974 2233222222 23446666655
No 470
>PRK06904 replicative DNA helicase; Validated
Probab=63.02 E-value=68 Score=42.50 Aligned_cols=128 Identities=16% Similarity=0.074 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE-EEec-
Q 000099 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVG- 1083 (2240)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv-vy~G- 1083 (2240)
...|+.+..-+..+.=.|||.-+|.|||.-++.++...... ...++||+...--..++...+.....++... +..|
T Consensus 208 ~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~ 285 (472)
T PRK06904 208 FTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQ 285 (472)
T ss_pred hHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCC
Confidence 34455555444444446999999999999887776655432 2358889887666666665544333222211 1122
Q ss_pred --chhhHhHHHHHHHhh-cCCcEEEE-----cHHHHHHhhhhc-cc-cCcceEecccccccC
Q 000099 1084 --AKDQRSRLFSQEVAA-LKFNVLVT-----TYEFIMYDRSKL-SK-VDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1084 --skdeRk~l~~qei~~-~~fdVVIT-----TYE~L~kD~s~L-~k-ikWd~VIIDEAHrLK 1135 (2240)
+.++..++....... ...++.|. |...+......+ .. ...++||||=-|.|.
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 122222221111111 12345553 344444332222 22 257899999888885
No 471
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=62.82 E-value=9.9 Score=48.68 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=23.6
Q ss_pred cceEecccccccCCchhHHHHHhhccccceEEEeecCCCCCC
Q 000099 1123 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164 (2240)
Q Consensus 1123 Wd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNn 1164 (2240)
--+++|||.||+- .++.-..|-.+.....+++-||- .|-
T Consensus 105 ~tiLflDEIHRfn--K~QQD~lLp~vE~G~iilIGATT-ENP 143 (436)
T COG2256 105 RTILFLDEIHRFN--KAQQDALLPHVENGTIILIGATT-ENP 143 (436)
T ss_pred ceEEEEehhhhcC--hhhhhhhhhhhcCCeEEEEeccC-CCC
Confidence 4578999999993 33444444455555556666663 443
No 472
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=62.24 E-value=18 Score=41.54 Aligned_cols=40 Identities=33% Similarity=0.305 Sum_probs=28.3
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.++.|.+|...+|+|||..+++++..++. ++ .+++++.-.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g--~~v~f~~~~ 84 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-KG--YSVLFITAS 84 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----EEEEEHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CC--cceeEeecC
Confidence 45677899999999999999999888876 22 356666533
No 473
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=62.17 E-value=36 Score=40.24 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=31.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (2240)
.+++.+.|+|||..+..++..... ...++++|.=..........+..
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~~~~~~~~~~~ 74 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENTSKSYLKQMES 74 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCCHHHHHHHHHH
Confidence 478899999999999888766543 24577777744444444444444
No 474
>PRK10867 signal recognition particle protein; Provisional
Probab=60.87 E-value=44 Score=43.77 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=24.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
.+++...|+|||.+++.++.++.... . .++++|+
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~-G-~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK-K-KKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc-C-CcEEEEE
Confidence 47889999999999988888876531 2 3455554
No 475
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=60.86 E-value=20 Score=43.36 Aligned_cols=49 Identities=20% Similarity=0.107 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
++....++.++.....+.+.+|..+.|+|||..+.++...+ ..+++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 55666677777777778889999999999999887765422 24666664
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=60.36 E-value=57 Score=41.05 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
+|.-..|.|||.++..+..++.. ..+.++|+.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEe
Confidence 56789999999998887776653 234566665
No 477
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=60.13 E-value=13 Score=48.16 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
+-+|+-+.|+|||+.+.++..... -.+.-|.|.+|...|.-|..+.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHHH
Confidence 458999999999999988876443 2567788899999998776553
No 478
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=59.96 E-value=34 Score=40.97 Aligned_cols=38 Identities=34% Similarity=0.481 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHH
Q 000099 1028 MGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSE 1068 (2240)
Q Consensus 1028 MGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~E 1068 (2240)
=|.|||..++.+..++.. .+ .+++||- |...+..|...
T Consensus 11 GGvGKTT~a~nLA~~la~-~G--~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 11 GGAGKTTALMGLCAALAS-DG--KRVALFEADENRPLTRWKEN 50 (231)
T ss_pred CCccHHHHHHHHHHHHHh-CC--CcEEEEeCCCCCCHHHHHHh
Confidence 389999999888887764 32 3555554 55667788653
No 479
>PRK09165 replicative DNA helicase; Provisional
Probab=59.96 E-value=1.2e+02 Score=40.40 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=67.3
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------------CCCCeEEEechHHHHHHHHHHHHHCCC
Q 000099 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------------NYGPHLIIVPNAVLVNWKSELHKWLPS 1075 (2240)
Q Consensus 1008 GLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------------~~GP~LIVVP~SLL~QW~~Ef~Kw~Ps 1075 (2240)
.|.-++.-+..+.=.||+..+|.|||..++.++.......+ ...++|++...-...++...+.....+
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~ 285 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSE 285 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence 45555543333334689999999999999888776653221 235788887655555555444333222
Q ss_pred CeEE-EEec--chhhHhHHHHHHHhhcCCcEEEE-----cHHHHHHhhh-hccccCcceEecccccccC
Q 000099 1076 VSCI-YYVG--AKDQRSRLFSQEVAALKFNVLVT-----TYEFIMYDRS-KLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1076 lkVv-vy~G--skdeRk~l~~qei~~~~fdVVIT-----TYE~L~kD~s-~L~kikWd~VIIDEAHrLK 1135 (2240)
+... +..| +..+..++..........++.|. |.+.+..... .......++||||=-|.|.
T Consensus 286 v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 286 ISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcc
Confidence 2111 1122 12222333222222334455554 2334433222 2223468899999888775
No 480
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=59.96 E-value=44 Score=39.91 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=27.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
+.-.+|..+.|+|||..++.++..+.. . ..+++.|+..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~--g~~~~yi~~e 61 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-N--GYSVSYVSTQ 61 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-C--CCcEEEEeCC
Confidence 445688999999999998888877654 2 2466777753
No 481
>PRK08760 replicative DNA helicase; Provisional
Probab=59.89 E-value=69 Score=42.46 Aligned_cols=126 Identities=16% Similarity=0.102 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE-EEecc--
Q 000099 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVGA-- 1084 (2240)
Q Consensus 1008 GLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv-vy~Gs-- 1084 (2240)
.|..+..-+..+.=.|||..+|.|||..++.++....... ..+++++...-...+|...+......+... +..|.
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~ 295 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALE 295 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCC
Confidence 3544544333344458999999999999988887665322 247888887766677777665543322211 11222
Q ss_pred hhhHhHHHHHHHhhcCCcEEEE-----cHHHHHHhhhhc-cccCcceEecccccccC
Q 000099 1085 KDQRSRLFSQEVAALKFNVLVT-----TYEFIMYDRSKL-SKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1085 kdeRk~l~~qei~~~~fdVVIT-----TYE~L~kD~s~L-~kikWd~VIIDEAHrLK 1135 (2240)
..+..++...........++|. |.+.+......+ .....++||||=-+.|.
T Consensus 296 ~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 1222222111112233455554 233333222222 23467899999877775
No 482
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.70 E-value=84 Score=41.16 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=45.1
Q ss_pred CcceEecccccccCCchhHHHHHhhcc-----ccceEEEeecCCCCCCHHHHHHHHhhhccc-----------ccCChHH
Q 000099 1122 DWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPE-----------VFDNRKA 1185 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~SKlskaLk~L-----ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~-----------iF~S~~s 1185 (2240)
.+++|+||.+=+..+ ...+...+..+ .....|.|++|--.+.+.+++..+..+... .++..-+
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~ 347 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALD 347 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHH
Confidence 567888888644332 22233333333 224567799997777777777776655432 1234445
Q ss_pred HHhhhcCCcccCCCCC
Q 000099 1186 FHDWFSQPFQKEGPTH 1201 (2240)
Q Consensus 1186 F~e~F~kPf~~~g~~~ 1201 (2240)
+...+..|+...+...
T Consensus 348 ~~~~~~lPi~yvt~Gq 363 (420)
T PRK14721 348 AVIRRKLVLHYVTNGQ 363 (420)
T ss_pred HHHHhCCCEEEEECCC
Confidence 5555667776654433
No 483
>PRK11054 helD DNA helicase IV; Provisional
Probab=59.13 E-value=21 Score=49.04 Aligned_cols=63 Identities=16% Similarity=0.059 Sum_probs=46.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNWKSE 1068 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~QW~~E 1068 (2240)
.|.+.|.++|..- ..+.++....|+|||.+.++-+.||+.... ....+|+|+.+....++..+
T Consensus 196 ~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 196 PLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred CCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHH
Confidence 6899999998532 223455566999999999999999996443 33478999988877665444
No 484
>PRK05748 replicative DNA helicase; Provisional
Probab=59.11 E-value=76 Score=41.50 Aligned_cols=128 Identities=14% Similarity=0.030 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE-EEecc
Q 000099 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVGA 1084 (2240)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv-vy~Gs 1084 (2240)
..+|+.++.-+..+.-.||+..+|.|||.-++.++...... ...+++++...-...++...+..-...+... +..|.
T Consensus 190 ~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~ 267 (448)
T PRK05748 190 FTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQ 267 (448)
T ss_pred hHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCC
Confidence 44566665544444446899999999999998888765432 2347888876544444444443222222111 11221
Q ss_pred --hhhHhHHHHHHHhhcCCcEEEE-----cHHHHHHhhhhc-ccc-CcceEecccccccC
Q 000099 1085 --KDQRSRLFSQEVAALKFNVLVT-----TYEFIMYDRSKL-SKV-DWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1085 --kdeRk~l~~qei~~~~fdVVIT-----TYE~L~kD~s~L-~ki-kWd~VIIDEAHrLK 1135 (2240)
..+..++..........++.|. |...+......+ ... ..++||||=-|.|.
T Consensus 268 l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 268 LTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1121122111112233455553 334444332222 223 57899999888875
No 485
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=59.09 E-value=42 Score=43.87 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.+++...|+|||.++..++.++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 578999999999999888888753
No 486
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=59.08 E-value=29 Score=41.17 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH---------HhCCCCCeEEEe---chHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME---------FKGNYGPHLIIV---PNAVLVNWKSELHKW 1072 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle---------~kg~~GP~LIVV---P~SLL~QW~~Ef~Kw 1072 (2240)
+||+.+-|+|||..++.++..... .....+++|+|+ |...+..-...+...
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQH 66 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhh
Confidence 689999999999999888765432 112456788888 444454444444443
No 487
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=59.01 E-value=26 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=17.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa 1041 (2240)
.+.||..+.|+|||..+-++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999977765543
No 488
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=58.96 E-value=29 Score=43.70 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
++|++......+...+..-.++ |+..+.|+|||..+..+...++-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4677777777777665443444 68899999999999888877764
No 489
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.84 E-value=79 Score=39.99 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+..+...+.++ .+-|+..+.|+|||..+-++...+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444455444333 2457999999999988877755443
No 490
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=58.74 E-value=24 Score=42.80 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHH
Q 000099 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMA 1038 (2240)
Q Consensus 1008 GLqwLlsL~~n~lnGILADEMGLGKTIQAIA 1038 (2240)
++++|+.+- .+..++|..+.|+|||..+-.
T Consensus 6 ~id~~~~i~-~Gqr~~I~G~~G~GKTTLlr~ 35 (249)
T cd01128 6 VVDLFAPIG-KGQRGLIVAPPKAGKTTLLQS 35 (249)
T ss_pred heeeecccC-CCCEEEEECCCCCCHHHHHHH
Confidence 455555433 355567777899999954433
No 491
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.71 E-value=47 Score=46.23 Aligned_cols=152 Identities=15% Similarity=0.118 Sum_probs=75.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hH---HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NA---VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~S---LL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~ 1097 (2240)
..|...+|.|||.++.-+..++....+. ..+.||+- .. .+.||..-... . ++.+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~-~-gvpv------------------- 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRI-L-GVPV------------------- 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHh-C-CCCc-------------------
Confidence 3688999999998887766655433332 24444442 21 33444322111 1 1111
Q ss_pred hcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-----ccceEEEeecCCCCCCHHHHHHHH
Q 000099 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLL 1172 (2240)
Q Consensus 1098 ~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-----ks~~RLLLTGTPLQNnL~ELwSLL 1172 (2240)
.++.+...+.+....+. .+++||||=+=+.-+.. .+...+..+ .....|.|++|--...+.++..-|
T Consensus 246 -----~~~~~~~~l~~al~~~~--~~D~VLIDTAGRs~~d~-~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 246 -----HAVKDAADLRFALAALG--DKHLVLIDTVGMSQRDR-NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred -----cccCCHHHHHHHHHHhc--CCCEEEEeCCCCCccCH-HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 11223333333233332 45788888877664322 233333332 234467788886555566665555
Q ss_pred hhh---ccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000099 1173 NLL---LPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (2240)
Q Consensus 1173 nFL---lP~-----------iF~S~~sF~e~F~kPf~~~g~~~~~ 1203 (2240)
+.+ .+. -++..-++...+..|+...+.....
T Consensus 318 ~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~GQ~V 362 (767)
T PRK14723 318 RHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKV 362 (767)
T ss_pred hhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEecCCCC
Confidence 432 111 1233445566667777765544443
No 492
>PHA02244 ATPase-like protein
Probab=58.67 E-value=43 Score=43.13 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=22.5
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHH
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
.+...+.+.+|..++|+|||..+.++...
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 33445888999999999999888666543
No 493
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=58.56 E-value=14 Score=50.92 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
..+.+|.-+.|+|||..+-++...+ ..+++.|-+..++..|.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKWV 528 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhccc
Confidence 3456889999999998886665432 23666666666666554
No 494
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=58.03 E-value=24 Score=48.67 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=68.0
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000099 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (2240)
Q Consensus 1324 irsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLL 1402 (2240)
+..|||.++...++.+..+.|+.|||-..-.....-+...|+.+ |.++..+|++.+..+|.+.-.+...++.. ++|
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~---vVI 301 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR---VVI 301 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce---EEE
Confidence 56799999999999999999999999998888777777777655 78899999999999999998888876555 556
Q ss_pred ecccc
Q 000099 1403 SIRAA 1407 (2240)
Q Consensus 1403 STrAG 1407 (2240)
.|+.+
T Consensus 302 GtRSA 306 (730)
T COG1198 302 GTRSA 306 (730)
T ss_pred Eechh
Confidence 66653
No 495
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=57.83 E-value=80 Score=41.42 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=23.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
.+|+-..|+|||.++..+..++.. . .. +++||+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~-~-G~-kV~lV~ 135 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR-K-GF-KPCLVC 135 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-C-CC-CEEEEc
Confidence 367889999999999888877653 2 22 555554
No 496
>PTZ00293 thymidine kinase; Provisional
Probab=57.54 E-value=31 Score=41.15 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=23.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
++...|++|||...|-.+..... ...+++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~---ag~kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTY---SEKKCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHH---cCCceEEEEec
Confidence 67889999999766665543332 33577888875
No 497
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=57.43 E-value=30 Score=44.78 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1008 GLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
+|.+++-+- .+..++|..+-|+|||..+-.++..+.
T Consensus 159 vID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 159 IIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 344444322 344566667799999976666554443
No 498
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=56.75 E-value=47 Score=41.14 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|++.+-|+|||..+..++..++
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHc
Confidence 8999999999999988887765
No 499
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.43 E-value=1.1e+02 Score=39.97 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec--hH--HHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP--NA--VLVNWKSE 1068 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP--~S--LL~QW~~E 1068 (2240)
+...+|+...|+|||.++..+..++.. .+ .++.+|+- -. .+.||..-
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~-~g--~~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLK-QN--RTVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cC--CeEEEEeCCccCccHHHHHHHH
Confidence 334578889999999998888776643 22 34555552 22 36677543
No 500
>PRK10689 transcription-repair coupling factor; Provisional
Probab=55.53 E-value=59 Score=47.43 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=69.2
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh----cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~----rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
..+||..+....+......+.+|||.+..+..+.-+...|.. .++.+..++|..+..++..+++.+..+..+ |+
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d--IV 707 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID--IL 707 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC--EE
Confidence 357888766555444456789999999999887766665553 356777899999999999999988754444 55
Q ss_pred EEecccccccCCCCCCCeEEEc
Q 000099 1401 LLSIRAAGRGLNLQSADTVIIY 1422 (2240)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIif 1422 (2240)
+.+.......+++.....||+=
T Consensus 708 VgTp~lL~~~v~~~~L~lLVID 729 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVD 729 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEe
Confidence 5554555556777788887763
Done!