Query 000099
Match_columns 2240
No_of_seqs 695 out of 3273
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:37:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 1.8E-75 6.2E-80 767.7 35.2 468 988-1518 224-713 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1.5E-70 5.1E-75 706.1 38.8 467 999-1513 54-552 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.6E-65 5.4E-70 636.0 34.7 444 993-1513 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.7E-46 6E-51 501.8 37.0 431 999-1470 152-632 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 3.4E-43 1.2E-47 423.3 30.2 427 1000-1454 9-473 (494)
6 2fwr_A DNA repair protein RAD2 100.0 6.7E-38 2.3E-42 386.2 22.7 356 998-1454 91-452 (472)
7 4a2p_A RIG-I, retinoic acid in 100.0 3.5E-36 1.2E-40 374.3 35.8 428 999-1454 6-506 (556)
8 3tbk_A RIG-I helicase domain; 100.0 1.5E-35 5.2E-40 367.3 33.4 432 999-1454 3-505 (555)
9 4a2q_A RIG-I, retinoic acid in 100.0 1E-35 3.6E-40 390.9 33.4 429 998-1454 246-747 (797)
10 1z5z_A Helicase of the SNF2/RA 100.0 5.7E-37 1.9E-41 357.4 17.0 236 1227-1513 12-248 (271)
11 4a2w_A RIG-I, retinoic acid in 100.0 3.9E-35 1.3E-39 391.7 31.0 415 998-1454 246-747 (936)
12 2ykg_A Probable ATP-dependent 100.0 1.5E-33 5.3E-38 362.8 29.9 420 999-1454 12-514 (696)
13 2oca_A DAR protein, ATP-depend 100.0 4.3E-33 1.5E-37 346.7 29.7 337 1000-1454 113-456 (510)
14 4gl2_A Interferon-induced heli 100.0 4.5E-33 1.5E-37 358.7 25.5 395 999-1442 6-509 (699)
15 1xti_A Probable ATP-dependent 100.0 6.6E-31 2.3E-35 313.0 36.3 316 1000-1452 30-355 (391)
16 3h1t_A Type I site-specific re 100.0 2.8E-32 9.6E-37 346.3 25.4 354 998-1454 176-559 (590)
17 1s2m_A Putative ATP-dependent 100.0 1.4E-30 4.7E-35 312.1 33.0 313 1000-1452 43-363 (400)
18 2j0s_A ATP-dependent RNA helic 100.0 3.5E-30 1.2E-34 310.0 33.1 315 1000-1452 59-381 (410)
19 1hv8_A Putative ATP-dependent 100.0 8.7E-31 3E-35 307.8 27.1 307 1000-1452 28-343 (367)
20 3eiq_A Eukaryotic initiation f 100.0 1.6E-30 5.4E-35 312.0 23.0 317 999-1452 61-385 (414)
21 3pey_A ATP-dependent RNA helic 100.0 3.3E-29 1.1E-33 297.3 30.3 314 999-1452 26-354 (395)
22 3hgt_A HDA1 complex subunit 3; 100.0 2.6E-30 8.8E-35 306.5 20.5 202 1240-1454 20-235 (328)
23 2db3_A ATP-dependent RNA helic 100.0 8.4E-29 2.9E-33 304.3 34.2 312 1000-1451 78-404 (434)
24 2i4i_A ATP-dependent RNA helic 100.0 2E-28 6.8E-33 294.6 34.0 316 999-1452 36-381 (417)
25 2z0m_A 337AA long hypothetical 100.0 5.8E-29 2E-33 289.5 26.3 298 1000-1452 16-321 (337)
26 1fuu_A Yeast initiation factor 100.0 3.6E-30 1.2E-34 306.5 16.3 315 999-1452 42-364 (394)
27 3fht_A ATP-dependent RNA helic 100.0 7.5E-28 2.6E-32 288.2 30.5 315 999-1452 46-377 (412)
28 3oiy_A Reverse gyrase helicase 100.0 1.2E-26 4.3E-31 281.1 32.5 304 999-1453 20-362 (414)
29 1oyw_A RECQ helicase, ATP-depe 100.0 1E-26 3.6E-31 293.1 30.6 306 999-1451 24-340 (523)
30 3sqw_A ATP-dependent RNA helic 100.0 2E-26 6.7E-31 292.7 32.9 324 1000-1452 43-396 (579)
31 3i5x_A ATP-dependent RNA helic 99.9 4E-26 1.4E-30 287.4 32.4 324 1000-1452 94-447 (563)
32 2v1x_A ATP-dependent DNA helic 99.9 5.2E-26 1.8E-30 290.7 30.0 309 999-1452 43-372 (591)
33 2eyq_A TRCF, transcription-rep 99.9 1.5E-25 5.1E-30 304.6 29.3 305 999-1451 602-919 (1151)
34 3fho_A ATP-dependent RNA helic 99.9 9.3E-27 3.2E-31 291.9 14.1 315 1000-1452 141-468 (508)
35 3fmp_B ATP-dependent RNA helic 99.9 1E-26 3.5E-31 287.6 14.1 314 999-1451 113-443 (479)
36 1gm5_A RECG; helicase, replica 99.9 8.4E-25 2.9E-29 286.6 17.4 307 1000-1451 368-694 (780)
37 2xgj_A ATP-dependent RNA helic 99.9 2E-23 6.8E-28 280.6 30.8 357 998-1454 84-497 (1010)
38 2r0y_A Chromatin structure-rem 99.9 1.1E-25 3.9E-30 267.2 4.8 202 1728-2050 43-269 (311)
39 2r10_A Chromatin structure-rem 99.9 2.9E-25 9.9E-30 268.6 6.0 216 1712-2053 82-322 (361)
40 2va8_A SSO2462, SKI2-type heli 99.9 1.5E-22 5.2E-27 262.9 28.4 324 1000-1454 30-406 (715)
41 2p6r_A Afuhel308 helicase; pro 99.9 6.6E-23 2.3E-27 266.1 23.8 315 1000-1454 25-386 (702)
42 2dat_A Possible global transcr 99.9 1.1E-23 3.7E-28 219.8 12.6 116 1929-2045 4-119 (123)
43 3l9o_A ATP-dependent RNA helic 99.9 2E-22 6.7E-27 273.1 27.2 348 999-1454 183-595 (1108)
44 2zj8_A DNA helicase, putative 99.9 2.8E-22 9.7E-27 260.9 27.0 315 1000-1454 23-385 (720)
45 3uv5_A Transcription initiatio 99.9 4E-24 1.4E-28 249.1 8.1 199 1731-2047 30-239 (265)
46 3mb4_A Protein polybromo-1; PB 99.9 2.5E-23 8.5E-28 217.3 11.3 117 1929-2046 6-122 (124)
47 3iu5_A Protein polybromo-1; PB 99.9 2.1E-23 7.3E-28 215.4 9.9 113 1935-2048 2-114 (116)
48 4a4z_A Antiviral helicase SKI2 99.9 1.1E-21 3.8E-26 263.5 29.2 375 998-1453 37-489 (997)
49 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.1E-21 3.8E-26 263.3 26.2 155 1000-1163 271-441 (1038)
50 4ddu_A Reverse gyrase; topoiso 99.9 1.7E-21 5.7E-26 264.0 27.1 277 998-1426 76-388 (1104)
51 3mqm_A Probable histone-lysine 99.9 7.3E-23 2.5E-27 214.3 10.5 111 1936-2047 7-117 (126)
52 3ljw_A Protein polybromo-1; al 99.9 1.1E-22 3.7E-27 211.4 10.5 108 1936-2044 6-113 (120)
53 3aad_A Transcription initiatio 99.9 4.5E-23 1.5E-27 243.3 8.5 196 1731-2046 63-271 (292)
54 3k2j_A Protein polybromo-1; PB 99.9 7.8E-22 2.7E-26 207.8 10.7 112 1933-2045 12-123 (130)
55 3tlp_A Protein polybromo-1; PB 99.9 7.9E-22 2.7E-26 212.1 10.6 118 1936-2054 22-142 (150)
56 2grc_A Probable global transcr 99.9 1.4E-21 4.6E-26 205.7 11.3 112 1935-2047 8-120 (129)
57 2yyn_A Transcription intermedi 99.8 5E-21 1.7E-25 202.8 12.7 111 1933-2051 15-127 (135)
58 1gku_B Reverse gyrase, TOP-RG; 99.8 4.9E-20 1.7E-24 249.2 21.9 272 998-1425 55-352 (1054)
59 3g0l_A Hwalp4, bromodomain adj 99.8 1.3E-20 4.3E-25 195.0 11.6 113 1928-2047 3-115 (117)
60 3d7c_A General control of amin 99.8 3E-20 1E-24 190.9 11.2 103 1936-2045 5-107 (112)
61 3iu6_A Protein polybromo-1; PB 99.8 4.3E-20 1.5E-24 196.7 11.2 109 1935-2048 4-112 (147)
62 3mb3_A PH-interacting protein; 99.8 4.6E-20 1.6E-24 195.3 11.2 113 1937-2061 20-133 (135)
63 3q2e_A Bromodomain and WD repe 99.8 3.7E-20 1.3E-24 193.2 9.6 105 1936-2047 8-113 (123)
64 2oss_A HUNK1 protein, bromodom 99.8 9.7E-20 3.3E-24 191.2 11.5 110 1930-2046 13-124 (127)
65 2i7k_A Bromodomain-containing 99.8 1.6E-19 5.5E-24 187.1 11.6 106 1937-2049 7-112 (117)
66 1tf5_A Preprotein translocase 99.8 8E-18 2.7E-22 219.0 29.6 120 1326-1450 414-541 (844)
67 2d9e_A Peregrin; four-helix bu 99.8 1.3E-19 4.5E-24 188.7 9.9 103 1937-2046 6-108 (121)
68 1e6i_A Transcriptional activat 99.8 1.4E-19 4.7E-24 188.5 9.4 98 1941-2045 16-113 (121)
69 3jvl_A Bromodomain-containing 99.8 1.4E-19 4.8E-24 187.9 9.2 108 1934-2046 6-115 (120)
70 2ouo_A HUNK1 protein, bromodom 99.8 1.7E-19 5.9E-24 190.0 10.0 111 1930-2045 15-127 (130)
71 4alg_A Bromodomain-containing 99.8 2.7E-19 9.1E-24 193.5 11.4 110 1931-2047 25-136 (154)
72 2jlq_A Serine protease subunit 99.8 4.5E-19 1.5E-23 219.8 13.7 97 1343-1447 187-304 (451)
73 3nxb_A CAT eye syndrome critic 99.8 3.4E-19 1.2E-23 184.0 10.3 99 1939-2044 17-115 (116)
74 2v6i_A RNA helicase; membrane, 99.8 1.9E-18 6.4E-23 213.2 17.8 97 1343-1447 170-283 (431)
75 3u5n_A E3 ubiquitin-protein li 99.8 6.1E-19 2.1E-23 198.8 12.0 114 1931-2052 74-207 (207)
76 2fsf_A Preprotein translocase 99.8 1.1E-17 3.7E-22 217.3 24.6 129 1325-1460 422-587 (853)
77 1yks_A Genome polyprotein [con 99.8 2.5E-18 8.5E-23 212.7 16.7 100 1343-1450 176-295 (440)
78 3rcw_A Bromodomain-containing 99.8 4.9E-19 1.7E-23 187.4 8.8 106 1934-2047 10-115 (135)
79 3p1f_A CREB-binding protein; s 99.8 1.1E-18 3.7E-23 181.1 10.8 106 1936-2047 9-116 (119)
80 3hme_A Bromodomain-containing 99.8 8.9E-19 3E-23 182.9 9.9 99 1939-2044 14-112 (123)
81 1nkt_A Preprotein translocase 99.8 4.7E-17 1.6E-21 211.7 28.0 127 1326-1459 442-620 (922)
82 3fkm_X Signaling protein; brom 99.8 1.8E-18 6.1E-23 189.2 12.0 109 1931-2046 14-124 (166)
83 1rif_A DAR protein, DNA helica 99.8 1.7E-18 5.8E-23 201.0 12.5 163 999-1177 112-278 (282)
84 3o36_A Transcription intermedi 99.8 1.8E-18 6E-23 191.7 11.7 107 1933-2047 76-184 (184)
85 2z83_A Helicase/nucleoside tri 99.7 2.1E-18 7.3E-23 214.3 12.8 100 1343-1450 189-309 (459)
86 2ri7_A Nucleosome-remodeling f 99.7 1.9E-18 6.5E-23 189.6 9.4 106 1933-2045 67-172 (174)
87 2wv9_A Flavivirin protease NS2 99.7 1.1E-17 3.9E-22 216.8 17.1 100 1343-1450 409-529 (673)
88 3dai_A ATPase family AAA domai 99.7 8.9E-18 3E-22 176.9 12.4 109 1938-2054 10-122 (130)
89 3uv4_A Second bromodomain of h 99.7 7.6E-18 2.6E-22 182.9 11.7 109 1935-2046 23-131 (158)
90 2ro1_A Transcription intermedi 99.7 5.9E-18 2E-22 188.6 10.9 110 1933-2054 71-185 (189)
91 2whx_A Serine protease/ntpase/ 99.7 3.3E-17 1.1E-21 210.8 19.2 94 1343-1444 354-467 (618)
92 2dkw_A Hypothetical protein KI 99.7 1.1E-17 3.7E-22 176.6 10.9 109 1927-2047 1-113 (131)
93 2hjv_A ATP-dependent RNA helic 99.7 4.6E-17 1.6E-21 175.1 16.0 122 1325-1451 18-139 (163)
94 1t5i_A C_terminal domain of A 99.7 4.1E-17 1.4E-21 177.5 15.1 121 1326-1451 15-135 (172)
95 2xau_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.5E-21 209.9 20.4 109 1343-1454 302-441 (773)
96 4f92_B U5 small nuclear ribonu 99.7 2.2E-15 7.7E-20 211.4 33.4 150 1000-1159 926-1092(1724)
97 2jgn_A DBX, DDX3, ATP-dependen 99.7 5.2E-17 1.8E-21 179.0 12.6 123 1325-1451 28-150 (185)
98 2fz4_A DNA repair protein RAD2 99.7 1.1E-16 3.9E-21 182.7 15.4 141 998-1165 91-233 (237)
99 3o8b_A HCV NS3 protease/helica 99.7 1.8E-16 6.1E-21 204.3 17.5 97 1343-1454 395-512 (666)
100 1fuk_A Eukaryotic initiation f 99.7 1.5E-16 5E-21 171.3 13.9 119 1329-1452 17-135 (165)
101 2p6n_A ATP-dependent RNA helic 99.7 1.3E-16 4.6E-21 176.9 13.9 120 1326-1451 39-158 (191)
102 3rc3_A ATP-dependent RNA helic 99.7 4E-16 1.4E-20 202.4 20.0 107 1346-1454 322-443 (677)
103 2r0y_A Chromatin structure-rem 99.7 6.3E-17 2.2E-21 192.5 8.5 102 1937-2045 27-129 (311)
104 2r10_A Chromatin structure-rem 99.6 9.1E-17 3.1E-21 194.7 8.4 102 1937-2045 77-179 (361)
105 2rb4_A ATP-dependent RNA helic 99.6 6.3E-16 2.2E-20 167.9 13.3 118 1328-1450 20-143 (175)
106 4f92_B U5 small nuclear ribonu 99.6 6.8E-15 2.3E-19 206.6 27.2 149 1000-1159 79-253 (1724)
107 3uv5_A Transcription initiatio 99.6 3.4E-16 1.2E-20 182.6 11.6 104 1937-2047 13-116 (265)
108 3eaq_A Heat resistant RNA depe 99.6 1.3E-15 4.3E-20 171.2 15.6 122 1325-1451 14-135 (212)
109 2gxq_A Heat resistant RNA depe 99.6 2.6E-15 8.9E-20 164.8 16.8 154 1000-1160 23-185 (207)
110 3jux_A Protein translocase sub 99.6 1.6E-14 5.6E-19 184.9 26.3 121 1325-1450 455-583 (822)
111 3b6e_A Interferon-induced heli 99.6 1.2E-15 4E-20 167.7 13.2 131 999-1136 32-176 (216)
112 1t6n_A Probable ATP-dependent 99.6 3.3E-15 1.1E-19 166.3 15.8 157 1000-1162 36-202 (220)
113 1c4o_A DNA nucleotide excision 99.6 1.1E-13 3.8E-18 179.6 31.8 113 1327-1442 422-539 (664)
114 2yjt_D ATP-dependent RNA helic 99.4 4.9E-17 1.7E-21 176.0 0.0 120 1327-1451 15-134 (170)
115 1q0u_A Bstdead; DEAD protein, 99.6 6.2E-15 2.1E-19 164.5 15.6 161 1000-1168 26-198 (219)
116 1vec_A ATP-dependent RNA helic 99.6 1.2E-14 4.2E-19 159.6 17.6 154 1000-1160 25-187 (206)
117 3aad_A Transcription initiatio 99.6 6.5E-16 2.2E-20 182.5 7.1 102 1937-2045 46-147 (292)
118 2oxc_A Probable ATP-dependent 99.6 1.3E-14 4.4E-19 163.5 16.7 153 1000-1160 46-208 (230)
119 2pl3_A Probable ATP-dependent 99.6 1.7E-14 5.9E-19 162.4 16.9 153 1000-1160 47-212 (236)
120 3ber_A Probable ATP-dependent 99.6 2E-14 6.7E-19 164.8 17.2 155 999-1160 64-227 (249)
121 3i32_A Heat resistant RNA depe 99.6 1.6E-14 5.4E-19 171.3 14.4 122 1325-1451 11-132 (300)
122 1qde_A EIF4A, translation init 99.6 3E-14 1E-18 158.7 15.9 153 1000-1160 36-196 (224)
123 1wrb_A DJVLGB; RNA helicase, D 99.5 4.1E-14 1.4E-18 161.2 16.6 155 999-1160 44-219 (253)
124 3bor_A Human initiation factor 99.5 3.2E-14 1.1E-18 161.2 15.1 155 1000-1160 52-214 (237)
125 2d7d_A Uvrabc system protein B 99.5 2.1E-12 7.2E-17 167.6 33.9 112 1327-1441 428-544 (661)
126 3iuy_A Probable ATP-dependent 99.5 3.1E-13 1.1E-17 151.4 17.1 154 1000-1160 42-208 (228)
127 3dkp_A Probable ATP-dependent 99.5 4.1E-13 1.4E-17 152.0 16.5 155 1000-1160 51-220 (245)
128 3fe2_A Probable ATP-dependent 99.4 1.4E-12 4.6E-17 148.1 18.2 154 1000-1160 51-217 (242)
129 3ly5_A ATP-dependent RNA helic 99.4 9.1E-13 3.1E-17 152.1 16.9 154 1000-1160 76-242 (262)
130 2vl7_A XPD; helicase, unknown 99.3 4.3E-11 1.5E-15 152.0 21.7 112 1331-1449 370-516 (540)
131 3fmo_B ATP-dependent RNA helic 99.3 1E-11 3.5E-16 146.6 14.4 154 999-1160 113-277 (300)
132 2ipc_A Preprotein translocase 99.3 1.5E-10 5.1E-15 151.1 26.0 148 998-1173 77-240 (997)
133 3lqh_A Histone-lysine N-methyl 99.3 8.7E-12 3E-16 138.3 11.4 103 1935-2055 72-174 (183)
134 4a15_A XPD helicase, ATP-depen 98.9 3.9E-08 1.3E-12 127.2 24.0 82 1000-1083 3-87 (620)
135 3llm_A ATP-dependent RNA helic 98.8 2.4E-08 8.1E-13 113.4 12.3 149 1000-1160 61-218 (235)
136 3crv_A XPD/RAD3 related DNA he 98.7 4.3E-08 1.5E-12 124.9 12.8 132 999-1136 2-187 (551)
137 3iu6_A Protein polybromo-1; PB 98.7 8.6E-10 2.9E-14 118.1 -3.7 87 1706-1808 10-107 (147)
138 3ljw_A Protein polybromo-1; al 98.6 8.2E-10 2.8E-14 115.0 -4.7 93 1706-1810 11-115 (120)
139 3mqm_A Probable histone-lysine 98.5 5.1E-09 1.8E-13 109.8 -1.6 78 1712-1800 17-105 (126)
140 3mb4_A Protein polybromo-1; PB 98.5 3.8E-09 1.3E-13 110.6 -2.8 83 1706-1800 18-111 (124)
141 2dat_A Possible global transcr 98.5 4.5E-09 1.5E-13 109.9 -2.4 84 1706-1801 16-110 (123)
142 3k2j_A Protein polybromo-1; PB 98.5 6.7E-09 2.3E-13 109.7 -2.1 82 1707-1800 21-113 (130)
143 3iu5_A Protein polybromo-1; PB 98.5 8.2E-09 2.8E-13 106.8 -1.9 81 1708-1800 10-101 (116)
144 3tlp_A Protein polybromo-1; PB 98.5 8.6E-09 3E-13 111.1 -2.7 94 1708-1812 29-134 (150)
145 2grc_A Probable global transcr 98.4 3.3E-08 1.1E-12 104.3 -1.5 86 1706-1802 14-110 (129)
146 3d7c_A General control of amin 98.0 3.5E-07 1.2E-11 94.1 -1.6 65 1730-1800 22-97 (112)
147 2i7k_A Bromodomain-containing 98.0 6.2E-07 2.1E-11 93.2 -1.2 64 1731-1800 24-98 (117)
148 1e6i_A Transcriptional activat 98.0 5.4E-07 1.8E-11 94.1 -1.7 65 1730-1800 28-103 (121)
149 2d9e_A Peregrin; four-helix bu 98.0 5E-07 1.7E-11 94.3 -2.0 63 1732-1800 24-97 (121)
150 3g0l_A Hwalp4, bromodomain adj 98.0 6.6E-07 2.2E-11 92.7 -1.5 64 1731-1800 29-103 (117)
151 3nxb_A CAT eye syndrome critic 97.9 7.7E-07 2.6E-11 92.0 -1.7 63 1732-1800 33-106 (116)
152 3uv4_A Second bromodomain of h 97.9 9.6E-07 3.3E-11 96.3 -1.6 81 1707-1800 29-120 (158)
153 3mb3_A PH-interacting protein; 97.9 9.4E-07 3.2E-11 93.8 -1.6 63 1732-1800 38-112 (135)
154 3hme_A Bromodomain-containing 97.9 1E-06 3.5E-11 92.2 -1.7 63 1732-1800 30-103 (123)
155 3q2e_A Bromodomain and WD repe 97.9 1.2E-06 4.1E-11 91.6 -1.5 63 1732-1800 27-101 (123)
156 2oss_A HUNK1 protein, bromodom 97.9 1.3E-06 4.4E-11 92.0 -1.6 65 1730-1800 36-113 (127)
157 3rcw_A Bromodomain-containing 97.8 1.4E-06 4.8E-11 92.4 -1.7 65 1730-1800 28-103 (135)
158 3jvl_A Bromodomain-containing 97.8 1.1E-06 3.9E-11 91.3 -3.1 67 1728-1800 25-104 (120)
159 3dai_A ATPase family AAA domai 97.8 2.8E-06 9.4E-11 89.7 -0.5 52 1730-1782 25-77 (130)
160 2ouo_A HUNK1 protein, bromodom 97.8 1.6E-06 5.5E-11 91.6 -2.3 64 1731-1800 41-117 (130)
161 2ri7_A Nucleosome-remodeling f 97.8 1.6E-06 5.4E-11 95.3 -2.8 65 1730-1800 87-162 (174)
162 3p1f_A CREB-binding protein; s 97.8 1.9E-06 6.4E-11 89.6 -2.1 65 1730-1800 27-104 (119)
163 4alg_A Bromodomain-containing 97.7 2.5E-06 8.4E-11 92.7 -1.7 76 1712-1800 36-124 (154)
164 3fkm_X Signaling protein; brom 97.5 6.3E-06 2.1E-10 90.5 -2.3 65 1730-1800 36-113 (166)
165 2yyn_A Transcription intermedi 97.5 8.4E-06 2.9E-10 86.7 -1.6 66 1730-1801 35-112 (135)
166 2dkw_A Hypothetical protein KI 97.4 2.1E-05 7E-10 83.4 -0.7 53 1731-1788 28-90 (131)
167 4b3f_X DNA-binding protein smu 97.3 0.0016 5.4E-08 84.8 15.8 69 998-1072 187-256 (646)
168 3u5n_A E3 ubiquitin-protein li 97.2 2.8E-05 9.7E-10 87.9 -1.9 65 1730-1800 96-173 (207)
169 3o36_A Transcription intermedi 97.2 2.2E-05 7.4E-10 87.3 -3.0 63 1732-1800 98-172 (184)
170 3upu_A ATP-dependent DNA helic 97.1 0.0032 1.1E-07 78.6 14.6 140 999-1162 24-166 (459)
171 2gk6_A Regulator of nonsense t 97.0 0.0035 1.2E-07 81.4 14.6 149 1000-1163 180-376 (624)
172 3e1s_A Exodeoxyribonuclease V, 96.9 0.0033 1.1E-07 81.1 13.0 132 998-1163 187-318 (574)
173 2xzl_A ATP-dependent helicase 96.8 0.0063 2.2E-07 81.3 14.2 148 1000-1162 360-553 (802)
174 2wjy_A Regulator of nonsense t 96.7 0.0084 2.9E-07 80.1 14.3 150 999-1163 355-552 (800)
175 1w36_D RECD, exodeoxyribonucle 96.5 0.0078 2.7E-07 78.0 12.1 145 1002-1164 151-302 (608)
176 3lfu_A DNA helicase II; SF1 he 95.3 0.073 2.5E-06 68.6 12.7 68 1000-1073 9-78 (647)
177 2o0j_A Terminase, DNA packagin 95.2 0.14 4.6E-06 63.3 14.3 156 999-1174 162-325 (385)
178 2orw_A Thymidine kinase; TMTK, 94.8 0.037 1.3E-06 61.2 7.0 35 1022-1059 6-40 (184)
179 2ro1_A Transcription intermedi 94.8 0.002 7E-08 72.1 -3.1 60 1731-1800 92-166 (189)
180 2b8t_A Thymidine kinase; deoxy 94.3 0.12 4.1E-06 59.3 9.9 111 1018-1159 11-124 (223)
181 3vkw_A Replicase large subunit 94.1 0.058 2E-06 67.6 7.3 108 1022-1163 164-272 (446)
182 3cpe_A Terminase, DNA packagin 94.1 0.28 9.7E-06 63.3 13.9 147 999-1163 162-316 (592)
183 2j9r_A Thymidine kinase; TK1, 93.3 0.29 1E-05 56.0 10.5 35 1023-1060 32-66 (214)
184 3syl_A Protein CBBX; photosynt 93.2 0.11 3.9E-06 60.4 7.3 40 1020-1059 68-108 (309)
185 1l8q_A Chromosomal replication 92.8 0.4 1.4E-05 56.6 11.1 98 1020-1159 38-139 (324)
186 1xx6_A Thymidine kinase; NESG, 92.5 0.35 1.2E-05 54.1 9.5 35 1022-1059 11-45 (191)
187 1a5t_A Delta prime, HOLB; zinc 92.5 0.31 1.1E-05 58.3 9.7 44 1001-1044 3-49 (334)
188 2chg_A Replication factor C sm 92.4 0.45 1.5E-05 51.3 10.1 41 1121-1161 101-142 (226)
189 3bos_A Putative DNA replicatio 91.7 0.75 2.6E-05 50.7 11.0 38 1008-1045 39-78 (242)
190 1uaa_A REP helicase, protein ( 91.2 0.89 3.1E-05 59.3 12.7 69 1000-1074 2-72 (673)
191 2p65_A Hypothetical protein PF 91.0 0.69 2.4E-05 48.8 9.4 26 1019-1044 43-68 (187)
192 3u61_B DNA polymerase accessor 90.6 0.43 1.5E-05 56.2 8.1 41 1122-1162 105-147 (324)
193 1jbk_A CLPB protein; beta barr 90.4 1.3 4.6E-05 46.4 11.0 27 1019-1045 43-69 (195)
194 3eie_A Vacuolar protein sortin 90.4 0.45 1.5E-05 56.5 8.0 40 1020-1065 52-91 (322)
195 1njg_A DNA polymerase III subu 90.0 1.3 4.5E-05 48.1 10.7 42 1002-1043 28-69 (250)
196 3h4m_A Proteasome-activating n 90.0 0.4 1.4E-05 55.2 7.0 24 1018-1041 50-73 (285)
197 3ec2_A DNA replication protein 89.9 2.5 8.6E-05 45.4 12.7 64 1002-1067 16-84 (180)
198 2z4s_A Chromosomal replication 89.3 1.2 4.3E-05 55.4 11.1 101 1020-1159 131-235 (440)
199 2qp9_X Vacuolar protein sortin 89.2 0.48 1.6E-05 57.3 7.1 37 1020-1062 85-121 (355)
200 1sxj_D Activator 1 41 kDa subu 89.0 0.57 1.9E-05 55.3 7.4 39 1122-1160 133-172 (353)
201 2qby_B CDC6 homolog 3, cell di 88.9 1.1 3.8E-05 53.4 9.9 44 1002-1045 25-71 (384)
202 2gno_A DNA polymerase III, gam 88.6 0.72 2.5E-05 55.0 7.9 38 1122-1159 82-120 (305)
203 3n70_A Transport activator; si 88.4 0.27 9.1E-06 51.7 3.7 31 1010-1040 15-45 (145)
204 1iqp_A RFCS; clamp loader, ext 88.3 1.5 5.1E-05 50.9 10.2 40 1121-1160 109-149 (327)
205 2bjv_A PSP operon transcriptio 88.3 0.98 3.4E-05 51.6 8.6 32 1009-1040 19-50 (265)
206 2orv_A Thymidine kinase; TP4A 87.9 0.65 2.2E-05 53.8 6.6 34 1023-1059 23-56 (234)
207 2v1u_A Cell division control p 87.3 1.1 3.8E-05 53.0 8.5 44 1002-1045 24-70 (387)
208 3vfd_A Spastin; ATPase, microt 86.5 1.3 4.4E-05 53.9 8.7 41 1019-1065 148-188 (389)
209 3crv_A XPD/RAD3 related DNA he 86.1 3.9 0.00013 52.3 13.1 86 1331-1426 379-473 (551)
210 3te6_A Regulatory protein SIR3 86.1 6.7 0.00023 47.3 14.3 44 1002-1045 25-71 (318)
211 3co5_A Putative two-component 85.8 0.3 1E-05 51.3 2.3 24 1016-1039 24-47 (143)
212 3uk6_A RUVB-like 2; hexameric 85.7 1.6 5.5E-05 52.0 8.8 54 1002-1059 49-106 (368)
213 4b4t_J 26S protease regulatory 85.5 1.3 4.3E-05 55.2 7.8 46 1019-1070 182-227 (405)
214 2qz4_A Paraplegin; AAA+, SPG7, 85.5 1.6 5.5E-05 49.3 8.2 24 1019-1042 39-62 (262)
215 1sxj_B Activator 1 37 kDa subu 85.4 1.2 4.2E-05 51.5 7.4 39 1122-1160 107-146 (323)
216 3e2i_A Thymidine kinase; Zn-bi 85.2 3.4 0.00012 47.5 10.6 35 1023-1060 32-66 (219)
217 1ofh_A ATP-dependent HSL prote 84.1 2.3 7.7E-05 49.1 8.8 25 1019-1043 50-74 (310)
218 2r2a_A Uncharacterized protein 83.2 0.92 3.2E-05 51.0 4.8 22 1022-1043 8-29 (199)
219 1jr3_A DNA polymerase III subu 82.9 2.8 9.6E-05 49.7 9.2 38 1122-1159 119-157 (373)
220 2zan_A Vacuolar protein sortin 82.9 1.3 4.6E-05 55.2 6.6 41 1020-1065 168-208 (444)
221 3d8b_A Fidgetin-like protein 1 82.5 1.7 5.7E-05 52.6 7.1 37 1019-1061 117-153 (357)
222 1xwi_A SKD1 protein; VPS4B, AA 82.2 1.1 3.8E-05 53.4 5.3 24 1020-1043 46-69 (322)
223 3cf0_A Transitional endoplasmi 82.0 2 6.9E-05 50.5 7.3 42 1018-1065 48-89 (301)
224 2q6t_A DNAB replication FORK h 81.7 4.7 0.00016 50.2 10.8 128 1007-1136 188-324 (444)
225 1w4r_A Thymidine kinase; type 81.3 2.2 7.6E-05 48.2 7.0 34 1023-1059 24-57 (195)
226 3t15_A Ribulose bisphosphate c 80.8 2.5 8.4E-05 49.8 7.5 38 1020-1063 37-74 (293)
227 3k1j_A LON protease, ATP-depen 80.8 1.6 5.5E-05 56.5 6.5 35 1007-1041 48-82 (604)
228 2qby_A CDC6 homolog 1, cell di 80.0 4.2 0.00014 48.0 9.2 44 1002-1045 25-71 (386)
229 2chq_A Replication factor C sm 79.2 1.2 4.1E-05 51.5 4.2 24 1021-1044 40-63 (319)
230 1pjr_A PCRA; DNA repair, DNA r 78.5 6.4 0.00022 52.1 11.1 104 1000-1132 11-120 (724)
231 1fnn_A CDC6P, cell division co 78.5 6.6 0.00022 46.7 10.3 23 1021-1043 46-68 (389)
232 3hu3_A Transitional endoplasmi 77.7 2.8 9.4E-05 53.3 7.0 38 1018-1061 237-274 (489)
233 2r6a_A DNAB helicase, replicat 77.5 19 0.00067 44.8 14.5 51 1007-1059 191-241 (454)
234 4b4t_H 26S protease regulatory 77.1 2.6 8.9E-05 53.3 6.4 45 1018-1068 242-286 (467)
235 1sxj_E Activator 1 40 kDa subu 76.8 5.4 0.00019 47.2 8.8 41 1122-1162 134-175 (354)
236 1gm5_A RECG; helicase, replica 75.2 9.8 0.00034 51.0 11.5 99 1325-1425 398-500 (780)
237 1sxj_C Activator 1 40 kDa subu 74.8 4.2 0.00014 48.4 7.2 39 1122-1160 110-149 (340)
238 1ojl_A Transcriptional regulat 73.2 5.5 0.00019 47.2 7.6 45 1010-1057 16-60 (304)
239 4b4t_I 26S protease regulatory 72.9 4.8 0.00016 50.5 7.2 45 1019-1069 216-260 (437)
240 1d2n_A N-ethylmaleimide-sensit 72.9 4.5 0.00015 46.4 6.6 23 1020-1042 65-87 (272)
241 3b9p_A CG5977-PA, isoform A; A 72.7 2.3 7.8E-05 49.3 4.1 23 1019-1041 54-76 (297)
242 1sxj_A Activator 1 95 kDa subu 72.3 6.2 0.00021 50.1 8.3 24 1020-1043 78-101 (516)
243 4a1f_A DNAB helicase, replicat 71.0 12 0.00039 45.6 9.8 50 1007-1059 34-83 (338)
244 4b4t_L 26S protease subunit RP 70.9 2.9 9.8E-05 52.5 4.6 44 1019-1068 215-258 (437)
245 3bh0_A DNAB-like replicative h 69.4 13 0.00045 44.2 9.7 50 1007-1059 56-105 (315)
246 3hjh_A Transcription-repair-co 69.4 16 0.00055 46.4 11.0 85 1021-1113 16-115 (483)
247 1r6b_X CLPA protein; AAA+, N-t 69.1 16 0.00055 48.3 11.4 27 1018-1044 206-232 (758)
248 1w5s_A Origin recognition comp 68.4 8.2 0.00028 46.3 7.8 43 1002-1044 27-77 (412)
249 1g5t_A COB(I)alamin adenosyltr 68.0 17 0.00057 41.2 9.5 137 1019-1175 28-174 (196)
250 4dzz_A Plasmid partitioning pr 67.9 17 0.00057 39.3 9.5 111 1026-1175 9-121 (206)
251 3pvs_A Replication-associated 67.3 8.1 0.00028 48.4 7.7 21 1021-1041 52-72 (447)
252 2qen_A Walker-type ATPase; unk 67.1 13 0.00045 43.3 8.9 36 1002-1040 17-52 (350)
253 1qvr_A CLPB protein; coiled co 65.8 13 0.00046 50.0 9.7 27 1019-1045 191-217 (854)
254 3kl4_A SRP54, signal recogniti 64.4 14 0.00047 46.5 8.8 33 1022-1057 100-132 (433)
255 3bgw_A DNAB-like replicative h 63.6 11 0.00037 47.3 7.7 51 1006-1059 184-234 (444)
256 2w58_A DNAI, primosome compone 63.3 15 0.00051 40.0 7.9 35 1020-1057 55-89 (202)
257 3oiy_A Reverse gyrase helicase 63.0 25 0.00085 42.5 10.6 95 1325-1421 45-145 (414)
258 4b4t_M 26S protease regulatory 62.7 2.4 8.4E-05 53.1 1.7 44 1019-1068 215-258 (434)
259 2c9o_A RUVB-like 1; hexameric 62.7 6.1 0.00021 49.3 5.3 39 1020-1062 64-102 (456)
260 2cvh_A DNA repair and recombin 62.6 14 0.00047 40.4 7.5 46 1007-1058 7-53 (220)
261 4b4t_K 26S protease regulatory 62.4 3.6 0.00012 51.5 3.1 42 1019-1066 206-247 (428)
262 1um8_A ATP-dependent CLP prote 62.2 15 0.0005 44.3 8.3 24 1019-1042 72-95 (376)
263 3cf2_A TER ATPase, transitiona 61.1 16 0.00055 49.2 9.1 42 1019-1066 511-552 (806)
264 2ce7_A Cell division protein F 59.8 18 0.00061 45.9 8.7 22 1020-1041 50-71 (476)
265 3dm5_A SRP54, signal recogniti 59.1 18 0.00061 45.6 8.4 33 1022-1057 103-135 (443)
266 2kjq_A DNAA-related protein; s 58.8 11 0.00037 40.1 5.6 27 1018-1044 35-61 (149)
267 2eyq_A TRCF, transcription-rep 55.9 34 0.0012 47.8 11.2 98 1325-1424 633-734 (1151)
268 2fna_A Conserved hypothetical 55.9 68 0.0023 37.2 12.3 35 1002-1041 18-52 (357)
269 2w0m_A SSO2452; RECA, SSPF, un 55.4 56 0.0019 35.6 10.8 48 1008-1058 11-59 (235)
270 3pxi_A Negative regulator of g 55.1 13 0.00045 49.3 6.7 23 1021-1043 523-545 (758)
271 3u4q_B ATP-dependent helicase/ 55.1 16 0.00056 50.8 8.0 85 1023-1132 6-91 (1166)
272 3u4q_A ATP-dependent helicase/ 54.0 34 0.0012 48.1 10.8 121 999-1132 9-137 (1232)
273 4ddu_A Reverse gyrase; topoiso 52.9 30 0.001 48.1 9.9 98 1325-1424 102-205 (1104)
274 1ixz_A ATP-dependent metallopr 51.4 44 0.0015 37.7 9.4 21 1020-1040 50-70 (254)
275 2qgz_A Helicase loader, putati 49.5 30 0.001 41.1 7.9 37 1019-1057 152-188 (308)
276 1iy2_A ATP-dependent metallopr 47.1 45 0.0015 38.4 8.8 20 1021-1040 75-94 (278)
277 1xp8_A RECA protein, recombina 44.9 31 0.0011 42.2 7.3 56 1007-1065 60-117 (366)
278 2zts_A Putative uncharacterize 44.8 46 0.0016 36.9 8.1 50 1019-1070 30-79 (251)
279 2zpa_A Uncharacterized protein 44.3 24 0.00082 46.6 6.5 54 999-1060 174-227 (671)
280 2dhr_A FTSH; AAA+ protein, hex 41.9 49 0.0017 42.2 8.6 21 1020-1040 65-85 (499)
281 1wp9_A ATP-dependent RNA helic 41.2 87 0.003 37.5 10.3 109 1325-1440 32-152 (494)
282 3cf2_A TER ATPase, transitiona 40.6 29 0.001 46.8 6.5 43 1020-1068 239-281 (806)
283 1t6n_A Probable ATP-dependent 40.3 1.5E+02 0.005 32.4 11.2 94 1325-1423 60-166 (220)
284 1nlf_A Regulatory protein REPA 38.8 39 0.0013 39.0 6.5 42 1017-1060 28-78 (279)
285 1vma_A Cell division protein F 37.0 48 0.0016 39.6 7.0 33 1022-1057 107-139 (306)
286 3nhm_A Response regulator; pro 36.2 1.5E+02 0.0053 28.9 9.6 99 1338-1442 21-123 (133)
287 1zu4_A FTSY; GTPase, signal re 36.1 66 0.0022 38.6 8.1 32 1023-1057 109-140 (320)
288 3fe2_A Probable ATP-dependent 36.0 1.8E+02 0.0062 32.5 11.3 92 1325-1422 75-183 (242)
289 3ber_A Probable ATP-dependent 35.5 1.9E+02 0.0065 32.7 11.5 91 1325-1421 89-192 (249)
290 3lqh_A Histone-lysine N-methyl 33.6 4.4 0.00015 45.4 -2.4 31 1751-1782 101-131 (183)
291 2zr9_A Protein RECA, recombina 32.9 63 0.0022 39.2 7.3 55 1007-1064 47-103 (349)
292 2px0_A Flagellar biosynthesis 32.8 62 0.0021 38.3 7.0 35 1021-1057 107-141 (296)
293 2oxc_A Probable ATP-dependent 32.1 1.3E+02 0.0044 33.4 9.2 62 1325-1386 70-139 (230)
294 1q57_A DNA primase/helicase; d 31.5 88 0.003 39.4 8.5 50 1009-1060 232-281 (503)
295 3i42_A Response regulator rece 30.6 70 0.0024 31.3 6.0 96 1342-1443 25-124 (127)
296 1gku_B Reverse gyrase, TOP-RG; 30.0 1E+02 0.0035 42.7 9.4 93 1325-1421 80-181 (1054)
297 1xti_A Probable ATP-dependent 30.0 2.1E+02 0.0073 33.7 11.1 94 1325-1423 54-160 (391)
298 2pl3_A Probable ATP-dependent 30.0 2.1E+02 0.0073 31.6 10.5 90 1325-1421 71-177 (236)
299 3a10_A Response regulator; pho 29.7 1.8E+02 0.0061 27.7 8.6 91 1343-1440 24-116 (116)
300 1cr0_A DNA primase/helicase; R 29.3 57 0.002 37.8 5.9 48 1009-1058 25-72 (296)
301 3iuy_A Probable ATP-dependent 27.7 1.4E+02 0.0047 32.9 8.4 73 1343-1421 93-173 (228)
302 3m6a_A ATP-dependent protease 27.5 95 0.0032 39.8 7.9 24 1019-1042 108-131 (543)
303 3eqz_A Response regulator; str 27.5 1.6E+02 0.0054 28.8 8.0 96 1344-1444 27-128 (135)
304 3ly5_A ATP-dependent RNA helic 27.5 3.3E+02 0.011 31.0 11.8 90 1325-1421 100-207 (262)
305 2ck3_A ATP synthase subunit al 27.5 2.1E+02 0.0072 36.8 10.8 78 1006-1084 150-235 (510)
306 2r44_A Uncharacterized protein 27.3 37 0.0013 39.9 3.9 24 1018-1041 45-68 (331)
307 1u94_A RECA protein, recombina 27.2 96 0.0033 37.8 7.5 50 1007-1059 49-100 (356)
308 2j48_A Two-component sensor ki 27.1 1.3E+02 0.0044 28.3 7.1 93 1342-1440 23-117 (119)
309 2z43_A DNA repair and recombin 27.1 1E+02 0.0035 36.6 7.6 53 1007-1059 94-150 (324)
310 3cmu_A Protein RECA, recombina 27.0 91 0.0031 46.1 8.3 57 1007-1066 718-776 (2050)
311 3grc_A Sensor protein, kinase; 26.6 1.9E+02 0.0064 28.7 8.5 97 1342-1442 28-128 (140)
312 1ls1_A Signal recognition part 26.4 1.2E+02 0.0041 35.8 8.0 32 1023-1057 102-133 (295)
313 3g5j_A Putative ATP/GTP bindin 26.2 70 0.0024 32.3 5.2 50 1330-1379 75-125 (134)
314 3ipz_A Monothiol glutaredoxin- 26.2 1.8E+02 0.0061 29.1 8.1 65 1336-1403 10-80 (109)
315 4a2p_A RIG-I, retinoic acid in 25.7 1.1E+02 0.0038 38.0 7.9 93 1325-1423 31-138 (556)
316 3cg4_A Response regulator rece 25.6 3.2E+02 0.011 27.0 9.9 95 1343-1441 30-127 (142)
317 2xxa_A Signal recognition part 25.3 40 0.0014 42.2 3.8 86 1023-1129 104-190 (433)
318 3n53_A Response regulator rece 25.2 4E+02 0.014 26.3 10.6 91 1344-1440 26-121 (140)
319 1ypw_A Transitional endoplasmi 25.1 54 0.0018 44.1 5.2 23 1018-1040 237-259 (806)
320 3i5x_A ATP-dependent RNA helic 24.6 2.5E+02 0.0085 35.4 10.9 78 1030-1108 319-400 (563)
321 3tbk_A RIG-I helicase domain; 24.1 87 0.003 38.8 6.5 91 1325-1421 28-133 (555)
322 3io5_A Recombination and repai 23.9 1.2E+02 0.0041 36.9 7.3 40 1022-1062 31-70 (333)
323 2b4a_A BH3024; flavodoxin-like 23.6 2.5E+02 0.0084 27.8 8.6 90 1343-1440 38-130 (138)
324 2v1x_A ATP-dependent DNA helic 23.4 1.9E+02 0.0065 37.5 9.6 77 1326-1405 69-145 (591)
325 3sqw_A ATP-dependent RNA helic 23.3 2.7E+02 0.0092 35.5 10.9 76 1032-1108 270-349 (579)
326 3zyw_A Glutaredoxin-3; metal b 23.2 2.2E+02 0.0076 28.7 8.2 59 1343-1403 14-78 (111)
327 2wem_A Glutaredoxin-related pr 22.7 2.8E+02 0.0094 28.6 8.9 58 1344-1403 19-83 (118)
328 2gxq_A Heat resistant RNA depe 22.4 2.5E+02 0.0086 30.0 9.0 91 1325-1421 47-150 (207)
329 4a2q_A RIG-I, retinoic acid in 22.1 1.4E+02 0.0049 39.7 8.4 91 1325-1421 272-377 (797)
330 2yan_A Glutaredoxin-3; oxidore 21.8 2.5E+02 0.0087 27.5 8.1 64 1336-1402 9-78 (105)
331 2dr3_A UPF0273 protein PH0284; 21.7 1.1E+02 0.0037 33.7 6.1 40 1018-1060 22-61 (247)
332 3hr8_A Protein RECA; alpha and 21.4 1.5E+02 0.0051 36.3 7.6 53 1007-1062 47-101 (356)
333 3b6e_A Interferon-induced heli 21.0 1E+02 0.0035 33.2 5.5 55 1326-1380 58-122 (216)
334 3hws_A ATP-dependent CLP prote 20.5 1.1E+02 0.0037 36.7 6.1 35 1019-1059 51-85 (363)
335 3gx8_A Monothiol glutaredoxin- 20.5 3.5E+02 0.012 27.7 9.2 58 1344-1403 15-81 (121)
336 1lv7_A FTSH; alpha/beta domain 20.2 1.2E+02 0.0042 34.1 6.2 23 1019-1041 45-67 (257)
337 2jgn_A DBX, DDX3, ATP-dependen 20.1 2.5E+02 0.0086 30.5 8.4 62 1043-1107 39-103 (185)
338 2qe7_A ATP synthase subunit al 20.1 2.1E+02 0.0072 36.7 8.7 74 1006-1084 150-227 (502)
339 3oaa_A ATP synthase subunit al 20.0 3.6E+02 0.012 34.7 10.7 74 1006-1084 150-227 (513)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-75 Score=767.74 Aligned_cols=468 Identities=40% Similarity=0.679 Sum_probs=396.0
Q ss_pred hhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
.+..+|..+.+++|||||++||+||+.++.++.||||||+||||||+++|++|.+++......+|+|||||.+++.||..
T Consensus 224 ~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 224 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp CCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHH
T ss_pred ccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHH
Confidence 44567888888899999999999999999999999999999999999999999999887888899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHH---------HhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQE---------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qe---------i~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~ 1138 (2240)
||.+|+|++.+++|+|....+..+.... .....++|+||||+++.++...|..+.|++|||||||++||..
T Consensus 304 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 304 TFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp HHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS
T ss_pred HHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch
Confidence 9999999999999999988776543322 2345789999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000099 1139 SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (2240)
Q Consensus 1139 SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~ 1218 (2240)
+++++++..+.+.+||+|||||++|++.|||+||+||.|+.|.....|.-.. . . ......+.
T Consensus 384 s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~------~-----~-------~~~~~~~~ 445 (800)
T 3mwy_W 384 SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN------Q-----D-------EEQEEYIH 445 (800)
T ss_dssp SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C------C-----T-------THHHHHHH
T ss_pred hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc------c-----c-------hhHHHHHH
Confidence 9999999999999999999999999999999999999999998765553110 0 0 11223467
Q ss_pred HHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000099 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298 (2240)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nil 1298 (2240)
.|+.++.||++||++.+|...||++.+.++.|.|++.|+.+|+.+.......+.... ......+.+.+
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~------------~~~~~~~l~~l 513 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA------------KGGHFSLLNIM 513 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------CTHHHHH
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc------------ccchhhHHHHH
Confidence 899999999999999999999999999999999999999999998775433322111 11223578899
Q ss_pred HHHHHHcCCCCCCCCCcccc-------------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHH
Q 000099 1299 MELRKTCNHPLLNYPYFSDL-------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365 (2240)
Q Consensus 1299 mqLRKICNHP~L~~p~~~~l-------------s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~ 1365 (2240)
+.||++|+||+++....... ....++..++|+.+|..+|..+...++||||||+|+.++++|+++|.
T Consensus 514 ~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~ 593 (800)
T 3mwy_W 514 NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS 593 (800)
T ss_dssp HHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH
Confidence 99999999999875432110 11345678999999999999999999999999999999999999999
Q ss_pred hcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1366 ~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
.+|+.+++|||+++..+|.+++++|+++++.++|||+||++||+||||+.|++||+||++|||..++||+||+||+||++
T Consensus 594 ~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 594 IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCS
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCcc
Q 000099 1446 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 1518 (2240)
Q Consensus 1446 eV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~k 1518 (2240)
+|.||+|++ .+|||+.|+++ +..|+.++..|++.|.++..
T Consensus 674 ~V~Vyrlv~--------------------------------~~TiEe~i~~~-~~~K~~l~~~vi~~~~~~~~ 713 (800)
T 3mwy_W 674 HVMVYRLVS--------------------------------KDTVEEEVLER-ARKKMILEYAIISLGVTDGN 713 (800)
T ss_dssp CEEEEEEEE--------------------------------TTSHHHHHHHH-HHHHTTSCC-----------
T ss_pred eEEEEEEec--------------------------------CCCHHHHHHHH-HHHHHHHHHHHHccCccccc
Confidence 999999976 37999999985 57899999999998877643
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-70 Score=706.05 Aligned_cols=467 Identities=30% Similarity=0.484 Sum_probs=388.7
Q ss_pred CCCcHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNAVLVNWKSEL 1069 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~SLL~QW~~Ef 1069 (2240)
..|||||++||.||+..+ .++.+|||||+||+|||+++|++|..++.... ..+++|||||.+++.||..||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 589999999999999876 46678999999999999999999999876443 245699999999999999999
Q ss_pred HHHCCC-CeEEEEec-chhhHhHHHHHHHh----hcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHH
Q 000099 1070 HKWLPS-VSCIYYVG-AKDQRSRLFSQEVA----ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (2240)
Q Consensus 1070 ~Kw~Ps-lkVvvy~G-skdeRk~l~~qei~----~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlsk 1143 (2240)
.+|++. +.++.++| ....+...+..... ...++|+||||+++..+...|....|++|||||||++||..++.++
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~ 213 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHH
Confidence 999975 55665554 44333322222111 1257899999999999989999999999999999999999999999
Q ss_pred HhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000099 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhkl 1223 (2240)
++..+.+.+||+|||||++|++.|||+||+||.|++|++...|..+|..|+.......... .........+.+|+.+
T Consensus 214 al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~---~~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 214 ALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD---KDRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS---HHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCH---HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887654333222 2223334457789999
Q ss_pred hhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000099 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (2240)
Q Consensus 1224 LrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRK 1303 (2240)
+.||++||++.++..+||++.+.+++|+|++.|+.+|+.+.......... ... .........++.||+
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-------~~g-----~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-------QTG-----KISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-------CTT-----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-------hcC-----ccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887643221100 000 011345567889999
Q ss_pred HcCCCCCCCCCc-------cc--------c-chhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEecchhHHHHHHHHHHh
Q 000099 1304 TCNHPLLNYPYF-------SD--------L-SKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQW 1366 (2240)
Q Consensus 1304 ICNHP~L~~p~~-------~~--------l-s~d~LirsSGKLelLdrIL~kL~a-tGhKVLIFSQ~t~~LDiLed~L~~ 1366 (2240)
+|+||.++.... .. . ........++|+.+|+.+|..+.. .++|+||||+++.++++|+.+|..
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 999998753210 00 0 011223568999999999998864 589999999999999999999999
Q ss_pred cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcce
Q 000099 1367 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (2240)
Q Consensus 1367 rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKe 1446 (2240)
.|+.+++|||+++.++|.+++++|++++...+|||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999998777778999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1447 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1447 V~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
|.||+|++ .++||++|++. +..|..+.+.|++.+
T Consensus 519 v~v~~lv~--------------------------------~~tiEe~i~~~-~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 519 CYIYRLLS--------------------------------TGTIEEKILQR-QAHKKALSSCVVDEE 552 (644)
T ss_dssp EEEEEEEE--------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCS
T ss_pred eEEEEEEE--------------------------------CCCHHHHHHHH-HHHHHHHHHHHhcCc
Confidence 99999976 37999999984 577888877777654
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.6e-65 Score=636.03 Aligned_cols=444 Identities=29% Similarity=0.516 Sum_probs=378.2
Q ss_pred CCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000099 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 993 Ps~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
|..+. .+|+|||.+|+.||..++..+.+|||||+||+|||+++++++..+.. .+..+++|||||.+++.||..||.+|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHH
Confidence 55554 58999999999999998888899999999999999999999988874 45567999999999999999999999
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccce
Q 000099 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1152 (2240)
Q Consensus 1073 ~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~ 1152 (2240)
+|.+.+.+++|.... .....++|+||||+.+.++.. +....|++|||||||+++|..+++++++..+.+.+
T Consensus 109 ~~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~ 179 (500)
T 1z63_A 109 APHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKY 179 (500)
T ss_dssp CTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEE
T ss_pred CCCceEEEEecCchh--------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCc
Confidence 999999999887632 223568999999999987755 67789999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
+|+|||||++|++.|||++++||.|+.|++...|.++|..|+.... .....+|+.++.||++||+
T Consensus 180 ~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------------~~~~~~l~~~l~~~~lrr~ 244 (500)
T 1z63_A 180 RIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILRRT 244 (500)
T ss_dssp EEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEECCC
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------------HHHHHHHHHHHhhHeeeec
Confidence 9999999999999999999999999999999999999987765421 1134578899999999999
Q ss_pred hhh--hccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1233 VED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1233 KkD--VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
+.+ +...||++.+.+++|+|++.|+.+|+.+.......+.... .......+...++.||++|+||.+
T Consensus 245 k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~lr~~~~~p~l 313 (500)
T 1z63_A 245 KYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVT-----------GIKRKGMILSTLLKLKQIVDHPAL 313 (500)
T ss_dssp TTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC-----------THHHHHHHHHHHHHHHHHTTCTHH
T ss_pred ccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh-----------cccchHHHHHHHHHHHHHhCCHHH
Confidence 976 6778999999999999999999999987654322211100 011234567788999999999987
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~ 1389 (2240)
.... ...+..++|+..|..+|.++...++|+||||+++.+++.|.++|... |+.+.+++|+++.++|.+++++
T Consensus 314 ~~~~------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~ 387 (500)
T 1z63_A 314 LKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 387 (500)
T ss_dssp HHCS------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHH
T ss_pred hcCc------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHH
Confidence 5321 22346789999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhc
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELR 1469 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~l 1469 (2240)
|+++ ..+.|||+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 388 F~~~-~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~--------------- 451 (500)
T 1z63_A 388 FQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS--------------- 451 (500)
T ss_dssp HHHC-TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE---------------
T ss_pred hcCC-CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe---------------
Confidence 9974 345688999999999999999999999999999999999999999999999999999976
Q ss_pred cCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1470 SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1470 s~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
.+|||+.|++. +..|..+.+.++..+
T Consensus 452 -----------------~~tiee~i~~~-~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 452 -----------------VGTLEEKIDQL-LAFKRSLFKDIISSG 477 (500)
T ss_dssp -----------------TTSHHHHTHHH-HTTCSSSSSSGGGST
T ss_pred -----------------CCCHHHHHHHH-HHHHHHHHHHHhhcC
Confidence 37899999984 577888777777664
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.7e-46 Score=501.84 Aligned_cols=431 Identities=18% Similarity=0.217 Sum_probs=319.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkV 1078 (2240)
.+|+|||.+++.|++.. .+.++||||+||+|||+++++++..++. .+..+++|||||.+|+.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 48999999999999873 3567899999999999999999988875 566679999999999999999999998 6777
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhccccCcceEecccccccCCchhH---HHHHhhcc--cc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY--RC 1150 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrLKN~~SK---lskaLk~L--ks 1150 (2240)
.+|+|........ ........++|+|+||+.+.++. ..+....|++|||||||+++|..+. .++.+..+ .+
T Consensus 228 ~v~~~~~~~~~~~-~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 228 ALFDDERYAEAQH-DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp EECCHHHHHHHHH-TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEccchhhhhhh-hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 7777654332111 11122346799999999998763 4466779999999999999987654 47777777 67
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcc---------cCCCC---------------------
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQ---------KEGPT--------------------- 1200 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~---------~~g~~--------------------- 1200 (2240)
.++|+|||||++|++.|+|++++||.|..|++...|..++..... .....
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 789999999999999999999999999999999888866431110 00000
Q ss_pred ---CCCChhhHHHHHHHHHHHHHHHHh-----hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC
Q 000099 1201 ---HNADDDWLETEKKVIIIHRLHQIL-----EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272 (2240)
Q Consensus 1201 ---~~~e~d~l~~Ee~~lii~RLhklL-----rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld 1272 (2240)
...+.... . . ....+..++ ..+++|+++..+ ..+|.+....+.+.+++....+|............
T Consensus 387 ~~~~~~~~~~~-~-~---~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 387 QAANSDSEDAQ-S-A---RQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp GGTCCCSSCST-T-T---HHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hcccchhhhhH-H-H---HHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000 0 0 011122222 234555555565 47899999999999999999988754332111110
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEec
Q 000099 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFST 1352 (2240)
Q Consensus 1273 ~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ 1352 (2240)
... ...|.+|...+..+.. .....+..+.|+..|.++|.. ..+.++||||+
T Consensus 461 ~~~--------------------------~~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~ 511 (968)
T 3dmq_A 461 EDR--------------------------ARDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICA 511 (968)
T ss_dssp GGG--------------------------THHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECS
T ss_pred HHH--------------------------HhhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeC
Confidence 000 0011223222222111 111345567899999999987 57899999999
Q ss_pred chhHHHHHHHHHHh-cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhH
Q 000099 1353 MTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE 1431 (2240)
Q Consensus 1353 ~t~~LDiLed~L~~-rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d 1431 (2240)
++.+++.|..+|.. .|+.+..+||+++..+|..++++|+++++.+ .+||+|+++++|||++.|++||+||+||||..|
T Consensus 512 ~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~ 590 (968)
T 3dmq_A 512 KAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLL 590 (968)
T ss_dssp STHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHH
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHH
Confidence 99999999999995 5999999999999999999999999865334 467899999999999999999999999999999
Q ss_pred HHHhhhhhccCCcceEEEEEEeh---hHHHhhhhhhhhhhcc
Q 000099 1432 EQAVARAHRIGQKREVKVIYMEA---VVDKISSHQKEDELRS 1470 (2240)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrLvT---VEEkI~s~q~eKe~ls 1470 (2240)
.|++||++|+||++.|.||+++. ++++|.....++....
T Consensus 591 ~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 591 EQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp HHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred HHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCce
Confidence 99999999999999999998864 6666666655544433
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.4e-43 Score=423.26 Aligned_cols=427 Identities=18% Similarity=0.181 Sum_probs=276.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~--Psl 1076 (2240)
+|+|||.+++.|++. + ++||+++||+|||+++++++..++. ...+++|||||. .|+.||..+|.+|+ +..
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 799999999999886 3 8999999999999999999888765 345689999997 68999999999998 566
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCchh--HHHHHhh-ccccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLD-RYRCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~S--KlskaLk-~Lks~ 1151 (2240)
.+.+++|........ .....++|+|+||+.+..... .+...+|++|||||||++++... .+...+. .....
T Consensus 82 ~v~~~~g~~~~~~~~----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 82 KIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp GEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred heEEeeCCcchhhhh----hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 889998876543221 112467999999999987643 45567899999999999986432 2222222 23567
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhccccc---CChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVF---DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF---~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
++|+|||||. ++..+++.++.++....+ .....+...+..+........... .....+...+.+++
T Consensus 158 ~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 226 (494)
T 1wp9_A 158 LVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP----------EIYKEVRKLLREML 226 (494)
T ss_dssp CEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC----------HHHHHHHHHHHHHH
T ss_pred eEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc----------HHHHHHHHHHHHHH
Confidence 8999999999 777888888877755432 221111111111110000000000 01345666777888
Q ss_pred HHhhhhhhccCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhc----ChhhHHHHHHHHHHHHHHHHH
Q 000099 1229 LRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK----NPIYQAKVYKTLNNRCMELRK 1303 (2240)
Q Consensus 1229 LRRlKkDVekdLP~KvE-~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~----~~~~~ak~~~sL~nilmqLRK 1303 (2240)
.++++......+..... .+-...+......++..+................... ...........+...+..|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (494)
T 1wp9_A 227 RDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYE 306 (494)
T ss_dssp HHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 88777654433322111 0101111122222222222111000000000000000 000000011223344444555
Q ss_pred HcCCCCCCCC--Cccccch----------hhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCc
Q 000099 1304 TCNHPLLNYP--YFSDLSK----------DFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (2240)
Q Consensus 1304 ICNHP~L~~p--~~~~ls~----------d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGi 1369 (2240)
.|.|+..... .+.+... ......+.|+..|..+|..+. ..++|+||||+++.+++.|.++|...|+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~ 386 (494)
T 1wp9_A 307 EAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386 (494)
T ss_dssp HHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred hhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC
Confidence 4444211000 0000000 001146789999999999876 5789999999999999999999999999
Q ss_pred eEEeecC--------CCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhcc
Q 000099 1370 VYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1370 ky~rLDG--------sTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRI 1441 (2240)
.+..++| +++.++|.+++++|++++.. ||++|+++++||||+.|++||+||++|||..++||+||+||.
T Consensus 387 ~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp CEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred CcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 9999999 99999999999999986544 699999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeh
Q 000099 1442 GQKREVKVIYMEA 1454 (2240)
Q Consensus 1442 GQKKeV~VyrLvT 1454 (2240)
|+ +.+|+|++
T Consensus 464 g~---g~~~~l~~ 473 (494)
T 1wp9_A 464 MP---GRVIILMA 473 (494)
T ss_dssp CC---SEEEEEEE
T ss_pred CC---ceEEEEEe
Confidence 98 56666654
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.7e-38 Score=386.17 Aligned_cols=356 Identities=19% Similarity=0.218 Sum_probs=253.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl 1076 (2240)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. .|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 45899999999998775 4569999999999999998887654 4689999998 7899999999995 56
Q ss_pred e-EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEE
Q 000099 1077 S-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155 (2240)
Q Consensus 1077 k-Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLL 1155 (2240)
. +.+++|.... ..+|+|+||+.+......+. .+|++|||||||++.+.... ..+..+.+.++|+
T Consensus 159 ~~v~~~~g~~~~------------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~ 223 (472)
T 2fwr_A 159 EYVGEFSGRIKE------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLG 223 (472)
T ss_dssp GGEEEBSSSCBC------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEE
T ss_pred cceEEECCCcCC------------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEE
Confidence 6 7788776432 46899999999987765553 36999999999999986544 3555667889999
Q ss_pred eecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 000099 1156 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235 (2240)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkD 1235 (2240)
|||||.+++..+ .. |..++.|++.++...+
T Consensus 224 lSATp~~~~~~~----------------~~----------------------------------l~~~~~~~~~~~~~~~ 253 (472)
T 2fwr_A 224 LTATFEREDGRH----------------EI----------------------------------LKEVVGGKVFELFPDS 253 (472)
T ss_dssp EESCCCCTTSGG----------------GS----------------------------------HHHHTCCEEEECCHHH
T ss_pred EecCccCCCCHH----------------HH----------------------------------HHHHhCCeEeecCHHH
Confidence 999998654211 00 1122223333332333
Q ss_pred hc-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc-CCCCCCCC
Q 000099 1236 VE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC-NHPLLNYP 1313 (2240)
Q Consensus 1236 Ve-kdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC-NHP~L~~p 1313 (2240)
+. ..+++.....+.+.+++.++..|..+.......+...... ......+. .+-.++ ..+.....
T Consensus 254 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~------------~~~~~~~~~~~~~~~ 319 (472)
T 2fwr_A 254 LAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT--LRRAEDFN------------KIVMASGYDERAYEA 319 (472)
T ss_dssp HTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT--TTCCSSST------------TTTTTTCCSSSSSTT
T ss_pred HhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc--ccchhhHH------------HHHHHhccCHHHHHH
Confidence 32 2367777778889999999888864422111000000000 00000000 000000 00000000
Q ss_pred Cc-cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc
Q 000099 1314 YF-SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (2240)
Q Consensus 1314 ~~-~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs 1392 (2240)
.. ...........+.|+..|..+|.. ..++++||||+++.+++.|.+.|. +..++|.++..+|.+++++|++
T Consensus 320 ~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 320 LRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp THHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC
Confidence 00 000011123456799999999887 568999999999999999999984 5568999999999999999998
Q ss_pred CCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCc-ceEEEEEEeh
Q 000099 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1454 (2240)
Q Consensus 1393 ~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQK-KeV~VyrLvT 1454 (2240)
++.+ +|++|+++++|||++.+++||+||++||+..+.|++||++|+|+. +.|.||+|++
T Consensus 393 g~~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 393 GRFR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp SSCS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred CCCC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 5554 689999999999999999999999999999999999999999998 8899999976
No 7
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.5e-36 Score=374.27 Aligned_cols=428 Identities=15% Similarity=0.134 Sum_probs=213.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~Kw~P- 1074 (2240)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999975 6789999999999999999988877753321 5689999997 688999999999987
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--c-cccCcceEecccccccCCchhHHHHHhhcc--
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrLKN~~SKlskaLk~L-- 1148 (2240)
++.+..++|........ ......++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC-----CH---HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhH---HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHH
Confidence 78888888876433221 11223589999999999875432 3 445789999999999987654 22222222
Q ss_pred -------ccceEEEeecCCCCCCH-------HHHHHHHhhhcccc----cCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000099 1149 -------RCQRRLLLTGTPLQNDL-------KELWSLLNLLLPEV----FDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (2240)
Q Consensus 1149 -------ks~~RLLLTGTPLQNnL-------~ELwSLLnFLlP~i----F~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~ 1210 (2240)
...++|+|||||..++. ..+..+...+.... ......+..++..|.................
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 23579999999988653 33334444444332 2234566666665543321111111111111
Q ss_pred HHHHHHHHHHHHHhhH----------------------HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccC
Q 000099 1211 EKKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1268 (2240)
Q Consensus 1211 Ee~~lii~RLhklLrP----------------------FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~ 1268 (2240)
........++..+.. ++....+......+|. ......+|..+.....
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 306 (556)
T 4a2p_A 238 -IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRALFICTE 306 (556)
T ss_dssp -HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C----------HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc----------cchhHHHHHHHHHHHH
Confidence 111122223333221 2222111111111111 1111222221111000
Q ss_pred cccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC------CCCCccccc--hhhHhhcccHHHHHHHHHHHH
Q 000099 1269 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYFSDLS--KDFLVKSCGKLWILDRILIKL 1340 (2240)
Q Consensus 1269 l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L------~~p~~~~ls--~d~LirsSGKLelLdrIL~kL 1340 (2240)
. +........... ..........+...+..++....++.- +......+. .......++|+..|..+|.+.
T Consensus 307 ~-l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~ 384 (556)
T 4a2p_A 307 H-LRKYNDALIISE-DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 384 (556)
T ss_dssp H-HHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHH
Confidence 0 000000000000 000000011111111111110000000 000000000 000012478999999999887
Q ss_pred H--hcCCeEEEEecchhHHHHHHHHHHhc------------CceEEeecCCCCHHHHHHHHHHHhc-CCCCccEEEEecc
Q 000099 1341 Q--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIR 1405 (2240)
Q Consensus 1341 ~--atGhKVLIFSQ~t~~LDiLed~L~~r------------Giky~rLDGsTs~eEReeaIk~FNs-~Ds~~fVfLLSTr 1405 (2240)
. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|+. ++.. |||+|+
T Consensus 385 ~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~ 461 (556)
T 4a2p_A 385 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATS 461 (556)
T ss_dssp HHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEEC
T ss_pred hcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEcC
Confidence 6 66899999999999999999999875 5556667778999999999999997 4444 789999
Q ss_pred cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
++++|||+++|++||+||+||||..|+||+|| +|. +++.+|.|++
T Consensus 462 ~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~ 506 (556)
T 4a2p_A 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 506 (556)
T ss_dssp -----------CEEEEETCCSCHHHHHHC------------CCEEEEES
T ss_pred chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 99999999999999999999999999999999 665 5666777654
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.5e-35 Score=367.33 Aligned_cols=432 Identities=13% Similarity=0.152 Sum_probs=232.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~Kw~P- 1074 (2240)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999975 6789999999999999999988877753321 6789999998 688999999999986
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--c-cccCcceEecccccccCCchhHHHHHhhcc--
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrLKN~~SKlskaLk~L-- 1148 (2240)
++.+..++|........ .......+|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 154 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLD 154 (555)
T ss_dssp TTCCEEEECTTTGGGSCH---HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhH---HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHH
Confidence 68888888876543221 11234589999999999876432 3 345789999999999987654 22222222
Q ss_pred --------ccceEEEeecCCCCCC-------HHHHHHHHhhhccccc----CChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1149 --------RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVF----DNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1149 --------ks~~RLLLTGTPLQNn-------L~ELwSLLnFLlP~iF----~S~~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
...++|+|||||..++ +..++.++.++....+ .....+..++..|................
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 2247999999999877 3444444455543322 23345555555443222111111111111
Q ss_pred HHHHHHHHHHHHHHhhHHHHH--hhhhhhccCCCCceE-----------EEEEeccCHHHHHHHHHHHHccCcccCchhH
Q 000099 1210 TEKKVIIIHRLHQILEPFMLR--RRVEDVEGSLPPKVS-----------IVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrPFmLR--RlKkDVekdLP~KvE-----------~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e 1276 (2240)
......+.+++.++..++-. .+.......+..... .............+|..+...... +.....
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 312 (555)
T 3tbk_A 235 -CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSH-LRKYND 312 (555)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH-HHHHHH
Confidence 11112223333333322110 000000000000000 000000000111111111000000 000000
Q ss_pred Hhhhh-cChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc-------------hhhHhhcccHHHHHHHHHHHHHh
Q 000099 1277 KRRVQ-KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS-------------KDFLVKSCGKLWILDRILIKLQR 1342 (2240)
Q Consensus 1277 ~~~l~-~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls-------------~d~LirsSGKLelLdrIL~kL~a 1342 (2240)
..... .... ......+...+..+ .+..+. .....+. .......++|+..|..+|..+..
T Consensus 313 ~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 313 ALIISEDAQM--TDALNYLKAFFHDV----REAAFD-ETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHSCH--HHHHHHHHHHHHHH----CC------HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhH--HHHHHHHHHHHHHH----hhcccc-hHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 00000 0000 00000000111111 000000 0000000 00011247899999999998865
Q ss_pred c--CCeEEEEecchhHHHHHHHHHHhcC------------ceEEeecCCCCHHHHHHHHHHHhc-CCCCccEEEEecccc
Q 000099 1343 T--GHRVLLFSTMTKLLDILEEYLQWRQ------------LVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIRAA 1407 (2240)
Q Consensus 1343 t--GhKVLIFSQ~t~~LDiLed~L~~rG------------iky~rLDGsTs~eEReeaIk~FNs-~Ds~~fVfLLSTrAG 1407 (2240)
. ++|+||||+++.+++.|.++|...+ ..+..+||+++.++|.+++++|++ ++.. |||+|+++
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~ 462 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSVA 462 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCCT
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcchh
Confidence 4 4999999999999999999999764 345556669999999999999997 4444 68899999
Q ss_pred cccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1408 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1408 GeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
++||||+.|++||+||+||||..|+||+|| |+.+.+.+|.|++
T Consensus 463 ~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~ 505 (555)
T 3tbk_A 463 DEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTS 505 (555)
T ss_dssp TCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEES
T ss_pred hcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEc
Confidence 999999999999999999999999999999 4457777887765
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1e-35 Score=390.89 Aligned_cols=429 Identities=15% Similarity=0.139 Sum_probs=220.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 35899999999999875 6789999999999999999988887754321 67899999965 88999999999987
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hc-cccCcceEecccccccCCchhHHHHHhhcc-
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARDLDRY- 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L-~kikWd~VIIDEAHrLKN~~SKlskaLk~L- 1148 (2240)
++.+.+++|........ ......++|+|+||+.+..... .+ ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGTCCEEEECCC-----CH---HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhH---HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78999999877443221 1223578999999999987543 22 344689999999999987554 22222222
Q ss_pred --------ccceEEEeecCCCCCCH----------HHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1149 --------RCQRRLLLTGTPLQNDL----------KELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1149 --------ks~~RLLLTGTPLQNnL----------~ELwSLLnFL-lP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
...++|+|||||.+++. .+||..|++- ..........+..++..|...............
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 476 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF- 476 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH-
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHH-
Confidence 22579999999987553 3344444321 112223345667777665433211111111111
Q ss_pred HHHHHHHHHHHHHHhhHHH----------------------HHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000099 1210 TEKKVIIIHRLHQILEPFM----------------------LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrPFm----------------------LRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~ 1267 (2240)
......+...++.+++.++ ....+......++.. .....+|..+....
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICT 546 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHH
Confidence 1111122334444443322 111111111111111 11111121111000
Q ss_pred CcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC------CCCCCccccc--hhhHhhcccHHHHHHHHHHH
Q 000099 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL------LNYPYFSDLS--KDFLVKSCGKLWILDRILIK 1339 (2240)
Q Consensus 1268 ~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~------L~~p~~~~ls--~d~LirsSGKLelLdrIL~k 1339 (2240)
.. +.......... ...........+...+..++.....+. .+......+. .......++|+..|..+|.+
T Consensus 547 ~~-l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (797)
T 4a2q_A 547 EH-LRKYNDALIIS-EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (797)
T ss_dssp HH-HHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhh-ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 00 00000000000 000000001111111111111000000 0000000000 00001247899999999988
Q ss_pred HH--hcCCeEEEEecchhHHHHHHHHHHhc------------CceEEeecCCCCHHHHHHHHHHHhc-CCCCccEEEEec
Q 000099 1340 LQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSI 1404 (2240)
Q Consensus 1340 L~--atGhKVLIFSQ~t~~LDiLed~L~~r------------Giky~rLDGsTs~eEReeaIk~FNs-~Ds~~fVfLLST 1404 (2240)
.. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|..++++|++ +... |||+|
T Consensus 625 ~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT 701 (797)
T 4a2q_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIAT 701 (797)
T ss_dssp HHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEE
T ss_pred HhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEc
Confidence 64 56799999999999999999999863 6667778899999999999999997 5444 78999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+++++||||+.|++||+||+||||..|+||+|| +|. +++.+|.|++
T Consensus 702 ~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp CC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEEC
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 999999999999999999999999999999999 665 6666777754
No 10
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=5.7e-37 Score=357.42 Aligned_cols=236 Identities=25% Similarity=0.352 Sum_probs=174.8
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
--+||+|++|..+||++.+.+++|+||+.|+.+|+.+.......+. ... .......+.+.++.||++|+
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~---------~~~--~~~~~~~~l~~l~~Lrq~~~ 80 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID---------SVT--GIKRKGMILSTLLKLKQIVD 80 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT---------TCC--HHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---------hcc--ccchHHHHHHHHHHHHHHcC
Confidence 3589999999999999999999999999999999988654211111 000 01123457788999999999
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eERee 1385 (2240)
||+++... ..++..++|+..|.++|..+...++|+||||+++.++++|+++|... |+.+.+++|+++.++|.+
T Consensus 81 hP~l~~~~------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 81 HPALLKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDD 154 (271)
T ss_dssp CTHHHHCS------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHH
T ss_pred CHHHhcCC------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHH
Confidence 99986421 12456789999999999999989999999999999999999999985 999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhh
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1465 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~e 1465 (2240)
++++|+.+ ..+.|||+||++||+||||+.|++||+||+||||..++||+||+||+||+++|.||+|++
T Consensus 155 ~i~~F~~~-~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~----------- 222 (271)
T 1z5z_A 155 IISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS----------- 222 (271)
T ss_dssp HHHHHHHC-TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE-----------
T ss_pred HHHHhcCC-CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee-----------
Confidence 99999974 346689999999999999999999999999999999999999999999999999999976
Q ss_pred hhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1466 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1466 Ke~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
.+|||+.|++. +..|..+.+.+++++
T Consensus 223 ---------------------~~TiEe~i~~~-~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 223 ---------------------VGTLEEKIDQL-LAFKRSLFKDIISSG 248 (271)
T ss_dssp ---------------------TTSHHHHHHHH-HHHCHHHHTTGGGGT
T ss_pred ---------------------CCCHHHHHHHH-HHHHHHHHHHHHccC
Confidence 37999999984 578999999888765
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.9e-35 Score=391.68 Aligned_cols=415 Identities=16% Similarity=0.168 Sum_probs=221.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~GP~LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..++.... ..+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35899999999999975 678999999999999999888876654322 157899999965 89999999999987
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--c-cccCcceEecccccccCCchhHHHHHhhcc-
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY- 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrLKN~~SKlskaLk~L- 1148 (2240)
++.+.+++|....+... ......++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~---~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~ 397 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (936)
T ss_dssp TTTCCEEEECCC-----CC---HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHH---HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78899998876443221 11234589999999999876432 2 334689999999999988654 33333222
Q ss_pred --------ccceEEEeecCCCCCCHHH----------HHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1149 --------RCQRRLLLTGTPLQNDLKE----------LWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1149 --------ks~~RLLLTGTPLQNnL~E----------LwSLLnFL-lP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
...++|+|||||.+++..+ ||.+|+.- ..........+..++..|................
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 2257999999998865433 33333321 1112223456666666554332111111111111
Q ss_pred HHHHHHHHHHHHHHhhH----------------------HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000099 1210 TEKKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrP----------------------FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~ 1267 (2240)
.....+...++.++.. ++....+......+|... ....+|..+....
T Consensus 478 -~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~----------~~~~~~~~l~~~~ 546 (936)
T 4a2w_A 478 -AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE----------EESRICRALFICT 546 (936)
T ss_dssp -HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHH----------HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccc----------hhhHHHHHHHHHH
Confidence 1111122233333222 222222222222222211 1111111110000
Q ss_pred CcccCchhHHhhh--hcC--------------------hhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhh
Q 000099 1268 TLRVDPEDEKRRV--QKN--------------------PIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVK 1325 (2240)
Q Consensus 1268 ~l~ld~~~e~~~l--~~~--------------------~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~Lir 1325 (2240)
.. +........+ ... ..........+...+..|...+..+. .
T Consensus 547 ~~-l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~---------------~ 610 (936)
T 4a2w_A 547 EH-LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET---------------N 610 (936)
T ss_dssp HH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTT---------------C
T ss_pred HH-HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccC---------------C
Confidence 00 0000000000 000 00000011111222223333332221 2
Q ss_pred cccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhc------------CceEEeecCCCCHHHHHHHHHHHh
Q 000099 1326 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~r------------Giky~rLDGsTs~eEReeaIk~FN 1391 (2240)
.++|+..|..+|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999998865 56799999999999999999999976 556667788899999999999999
Q ss_pred c-CCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1392 S-HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1392 s-~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
. +..+ |||+|+++++||||+.|++||+||+|||+..|+||+|| +|. +.+.||.|++
T Consensus 691 ~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~ 747 (936)
T 4a2w_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (936)
T ss_dssp ---CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEES
T ss_pred ccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEe
Confidence 7 4444 79999999999999999999999999999999999999 555 5666676654
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.5e-33 Score=362.76 Aligned_cols=420 Identities=17% Similarity=0.186 Sum_probs=221.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CCCCeEEEech-HHHHHHHHHHHHHCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NYGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~GP~LIVVP~-SLL~QW~~Ef~Kw~P- 1074 (2240)
.+|+|||.+++.|++. +.++|++++||+|||++++.++...+.... ..+++|||||+ .|+.||..+|.+|++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 4899999999999986 778999999999999999988887665432 22789999997 689999999999997
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--c-cccCcceEecccccccCCchhHHHHH---hhc
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARD---LDR 1147 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrLKN~~SKlska---Lk~ 1147 (2240)
++.+..++|+...+... .......+|+|+||+.+.+.... + ....|++|||||||++.+...-.... +..
T Consensus 88 ~~~~v~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~ 164 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPV---EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQ 164 (696)
T ss_dssp TTCCEEEECSSSCSSSCH---HHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccH---HHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHH
Confidence 68888888876433221 11224689999999999876432 3 44578999999999998765322221 111
Q ss_pred -c-----ccceEEEeecCCCCCC-------HHHHHHHHhhhcccccC----ChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000099 1148 -Y-----RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVFD----NRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (2240)
Q Consensus 1148 -L-----ks~~RLLLTGTPLQNn-------L~ELwSLLnFLlP~iF~----S~~sF~e~F~kPf~~~g~~~~~e~d~l~~ 1210 (2240)
+ ...++|+|||||..++ +.+|+.++..+....+. .......++..|..............+..
T Consensus 165 ~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~ 244 (696)
T 2ykg_A 165 KLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 244 (696)
T ss_dssp HHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHH
T ss_pred hhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHH
Confidence 1 3467999999998543 45566666555544332 22334444444421110000000000100
Q ss_pred HHHHHHHHHHHHH-----------------------hhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000099 1211 EKKVIIIHRLHQI-----------------------LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (2240)
Q Consensus 1211 Ee~~lii~RLhkl-----------------------LrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~ 1267 (2240)
.. ..+...+..+ +..+++++.+......+|.+.+.. ..-..++.....-.
T Consensus 245 ~~-~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 245 II-AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES------RICKALFLYTSHLR 317 (696)
T ss_dssp HH-HHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHH------HHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhh------HHHHHHHHHHHHHH
Confidence 00 0000111111 112222222222222223221100 00011111000000
Q ss_pred CcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhH-----------------hhcccHH
Q 000099 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFL-----------------VKSCGKL 1330 (2240)
Q Consensus 1268 ~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~L-----------------irsSGKL 1330 (2240)
.......+... .........+...+..++... ...+....+ ...+.|+
T Consensus 318 -----~~~~~~~i~~~-~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~ 382 (696)
T 2ykg_A 318 -----KYNDALIISEH-ARMKDALDYLKDFFSNVRAAG---------FDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 382 (696)
T ss_dssp -----HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHH
T ss_pred -----HHhHHHhccch-hhHHHHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 00000000000 000001111111111111000 000000000 0246799
Q ss_pred HHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcC----ceEEeecC--------CCCHHHHHHHHHHHhc-CCC
Q 000099 1331 WILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDG--------TTSLEDRESAIVDFNS-HDS 1395 (2240)
Q Consensus 1331 elLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rG----iky~rLDG--------sTs~eEReeaIk~FNs-~Ds 1395 (2240)
..|..+|.... ..++++||||+++.+++.|.++|...+ +.+..++| +++.++|.+++++|+. ++.
T Consensus 383 ~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~ 462 (696)
T 2ykg_A 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 462 (696)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCc
Confidence 99999998874 357899999999999999999999998 89999955 9999999999999996 554
Q ss_pred CccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1396 ~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
. +||+|+++++|||+++|++||+||+|||+..|+||+|| +|. +...++.|++
T Consensus 463 ~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~ 514 (696)
T 2ykg_A 463 N---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTS 514 (696)
T ss_dssp S---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEES
T ss_pred c---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEec
Confidence 4 58999999999999999999999999999999999999 886 4455566644
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.3e-33 Score=346.66 Aligned_cols=337 Identities=13% Similarity=0.138 Sum_probs=244.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHH--CCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKW--LPSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw--~Psl 1076 (2240)
+|+|||.+++.+++. +.++||+++||+|||++++.++..++.. ..+++|||||. .|+.||.++|.+| ++.+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 899999999999886 4679999999999999998887776652 23599999997 5889999999999 5667
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEEE
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1155 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RLL 1155 (2240)
.+..++|......+ .....+|+|+||+.+.+.... ...+|++|||||||++.+. .....+..+ .+.++|+
T Consensus 187 ~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~ 257 (510)
T 2oca_A 187 MIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFG 257 (510)
T ss_dssp GEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEE
T ss_pred ceEEEecCCccccc------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEE
Confidence 78877776543322 245789999999998776332 2347899999999999863 344556666 5678999
Q ss_pred eecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 000099 1156 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235 (2240)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkD 1235 (2240)
||||| .+...++|.+..++.+.++.. + .. + ...
T Consensus 258 lSATp-~~~~~~~~~~~~~~~~~~~~~----------~-----~~---~---~~~------------------------- 290 (510)
T 2oca_A 258 LSGSL-RDGKANIMQYVGMFGEIFKPV----------T-----TS---K---LME------------------------- 290 (510)
T ss_dssp EESCG-GGCSSCHHHHHHHHCSEECCC----------C-----CC-----------------------------------
T ss_pred EEeCC-CCCcccHHHhHHhhCCeEEee----------C-----HH---H---Hhh-------------------------
Confidence 99999 555566777776665543211 0 00 0 000
Q ss_pred hccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 000099 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1315 (2240)
Q Consensus 1236 VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~ 1315 (2240)
...+++.....+.+.++........ + ..+ .. .+..+
T Consensus 291 -~~~l~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~-----~~------~~~~~----------- 326 (510)
T 2oca_A 291 -DGQVTELKINSIFLRYPDEFTTKLK-----G----------------KTY-----QE------EIKII----------- 326 (510)
T ss_dssp ------CCEEEEEEEECCHHHHHHHT-----T----------------CCH-----HH------HHHHH-----------
T ss_pred -CCcCCCceEEEEeecCChHHhcccc-----c----------------cch-----HH------HHHHH-----------
Confidence 0135556666666666654331100 0 000 00 01111
Q ss_pred cccchhhHhhcccHHHHHHHHHHHHHhc-CCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCC
Q 000099 1316 SDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394 (2240)
Q Consensus 1316 ~~ls~d~LirsSGKLelLdrIL~kL~at-GhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~D 1394 (2240)
.....|...+..++..+... +.++||||. +..++.|.++|...+..+..+||.++.++|.++++.|++++
T Consensus 327 --------~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~ 397 (510)
T 2oca_A 327 --------TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK 397 (510)
T ss_dssp --------HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC
T ss_pred --------hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 11223555566666665444 556777777 88888899999999889999999999999999999999755
Q ss_pred CCccEEEEec-ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc-eEEEEEEeh
Q 000099 1395 SDCFIFLLSI-RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (2240)
Q Consensus 1395 s~~fVfLLST-rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (2240)
.. +||+| .++++|||++.+++||++|++||+..+.|++||++|.|+.+ .|.||.++.
T Consensus 398 ~~---vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 398 GI---IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp SC---EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred CC---EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 44 67777 99999999999999999999999999999999999999987 688888754
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=358.68 Aligned_cols=395 Identities=17% Similarity=0.226 Sum_probs=234.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHHH-HHHHHHHC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVNW-KSELHKWL 1073 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~S-LL~QW-~~Ef~Kw~ 1073 (2240)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... +..+++|||||+. |+.|| ..+|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999986 67899999999999999999887766432 3347899999975 88999 99999999
Q ss_pred CC-CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--------hhccccCcceEecccccccCCchh---HH
Q 000099 1074 PS-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRES---VL 1141 (2240)
Q Consensus 1074 Ps-lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrLKN~~S---Kl 1141 (2240)
+. +.+..++|........ .......+|+|+|++.+.... ..+....|++|||||||++.+... ..
T Consensus 82 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTTSCEEEEC----CCCCH---HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CcCceEEEEeCCcchhhHH---HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 87 8999998876543221 122357899999999998643 234556899999999999854221 11
Q ss_pred HHHhhc-c-------------ccceEEEeecCCCCCC-------HHHHHHHHhhhcc-ccc---CChHHHHhhhcCCccc
Q 000099 1142 ARDLDR-Y-------------RCQRRLLLTGTPLQND-------LKELWSLLNLLLP-EVF---DNRKAFHDWFSQPFQK 1196 (2240)
Q Consensus 1142 skaLk~-L-------------ks~~RLLLTGTPLQNn-------L~ELwSLLnFLlP-~iF---~S~~sF~e~F~kPf~~ 1196 (2240)
...+.. + ...++|+|||||..++ ..++..++..+.+ .+. .....+..++..|...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 112211 1 4467999999999863 3344445555555 222 1224455555544322
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHH-H---HHc----cC
Q 000099 1197 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW-I---KAT----GT 1268 (2240)
Q Consensus 1197 ~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~-L---~~~----~~ 1268 (2240)
............ ...+..+...+..++ ++. |.. .+.. ..|.. + ... ..
T Consensus 239 ~~~~~~~~~~~~-----~~~l~~l~~~i~~~~------~~~---~~~-------~~g~---~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 239 FAIADATREDPF-----KEKLLEIMTRIQTYC------QMS---PMS-------DFGT---QPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp EEEEC-----CH-----HHHHHHHHHHHHHHH------TCC---CCS-------CSSS---HHHHHHHHHHHHHHHHHTC
T ss_pred EEEcccccCChH-----HHHHHHHHHHHHHHh------ccC---cch-------hccc---hHHHHHHHHHHHHHHHhhh
Confidence 111000000000 011112222221111 000 100 0000 00110 0 000 00
Q ss_pred cccCchhHHhhhh------cChhhHHHHHHHHHHHHH------------------------------------HHHHHcC
Q 000099 1269 LRVDPEDEKRRVQ------KNPIYQAKVYKTLNNRCM------------------------------------ELRKTCN 1306 (2240)
Q Consensus 1269 l~ld~~~e~~~l~------~~~~~~ak~~~sL~nilm------------------------------------qLRKICN 1306 (2240)
............. .........+..+...+. .|..++.
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 374 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE 374 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000000 000000000011111111 1111211
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc---CCeEEEEecchhHHHHHHHHHHhc------CceEEeecCC
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---GHRVLLFSTMTKLLDILEEYLQWR------QLVYRRIDGT 1377 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~at---GhKVLIFSQ~t~~LDiLed~L~~r------Giky~rLDGs 1377 (2240)
.+. ..+.|+..|..+|...... +.++||||+++.+++.|.++|... |+.+..+||.
T Consensus 375 ~~~---------------~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~ 439 (699)
T 4gl2_A 375 NPE---------------YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGA 439 (699)
T ss_dssp CCC-------------------CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCS
T ss_pred cCC---------------CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECC
Confidence 110 1345666777777765443 789999999999999999999987 9999999999
Q ss_pred --------CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccC
Q 000099 1378 --------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1378 --------Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIG 1442 (2240)
++.++|.+++++|++++.+ |||+|+++++|||++++++||+||+|||+..|+||+||++|-|
T Consensus 440 ~~~~~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 440 GHSSEFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CCccCCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999976555 6899999999999999999999999999999999999986655
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.6e-31 Score=312.99 Aligned_cols=316 Identities=16% Similarity=0.170 Sum_probs=225.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~---Ps 1075 (2240)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .|+.||..++.+|. ++
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 699999999998876 67899999999999999877776554333344589999997 57889999999986 47
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchh---HHHHHhhcc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-R 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~L-k 1149 (2240)
+.+.++.|+....... ........+|+|+||+.+.... ..+....|++|||||||++.+... .+...+..+ .
T Consensus 106 ~~~~~~~g~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp CCEEEECTTSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred eEEEEEeCCCCHHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 8888888875543221 1233456799999999997653 223445789999999999976322 122222233 2
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
...+++|||||-.. ..++. ..++..|.......
T Consensus 184 ~~~~i~~SAT~~~~-~~~~~-----------------~~~~~~~~~~~~~~----------------------------- 216 (391)
T 1xti_A 184 EKQVMMFSATLSKE-IRPVC-----------------RKFMQDPMEIFVDD----------------------------- 216 (391)
T ss_dssp SSEEEEEESSCCST-HHHHH-----------------HHHCSSCEEEECCC-----------------------------
T ss_pred CceEEEEEeeCCHH-HHHHH-----------------HHHcCCCeEEEecC-----------------------------
Confidence 45689999997432 11111 11111111000000
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
.....+.......+.+
T Consensus 217 -----~~~~~~~~~~~~~~~~----------------------------------------------------------- 232 (391)
T 1xti_A 217 -----ETKLTLHGLQQYYVKL----------------------------------------------------------- 232 (391)
T ss_dssp -----CCCCCCTTCEEEEEEC-----------------------------------------------------------
T ss_pred -----ccccCcccceEEEEEc-----------------------------------------------------------
Confidence 0000000001111111
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
....|...|..++... .++++||||+....++.+.++|...|+.+..+||+++.++|..+++.
T Consensus 233 ---------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 295 (391)
T 1xti_A 233 ---------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 295 (391)
T ss_dssp ---------------CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred ---------------CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 1122444455555542 57899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
|++++.. +|++|+++++|||++.+++||+||++||+..|+|++||++|.|++..|.++..
T Consensus 296 f~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 296 FKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp HHTTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred HhcCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 9976554 79999999999999999999999999999999999999999998888777654
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.8e-32 Score=346.31 Aligned_cols=354 Identities=15% Similarity=0.150 Sum_probs=218.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC-CCeEEEcCCCchHHHHHHHHHHHHHHHh------CCCCCeEEEec-hHHHHHHH-HH
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNK-LNGILADEMGLGKTVQVMALIAYLMEFK------GNYGPHLIIVP-NAVLVNWK-SE 1068 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~-lnGILADEMGLGKTIQAIALIa~Lle~k------g~~GP~LIVVP-~SLL~QW~-~E 1068 (2240)
+.+|+|||.+++.+++..+.++ .++||+++||+|||++++.++..++... ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4589999999999999766554 5589999999999999999888887632 15678999999 55789999 78
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh------hhccccCcceEecccccccCCch-hHH
Q 000099 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRE-SVL 1141 (2240)
Q Consensus 1069 f~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~------s~L~kikWd~VIIDEAHrLKN~~-SKl 1141 (2240)
|..|.+.+. .+.+. ......+|+|+||+.+.... ..+....|++|||||||++.+.. +.+
T Consensus 256 ~~~~~~~~~--~~~~~-----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 256 FTPFGDARH--KIEGG-----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CTTTCSSEE--ECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHhcchhhh--hhhcc-----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 887754322 22221 12346799999999987652 33445579999999999998653 344
Q ss_pred HHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1142 skaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
...+..+...++|+|||||..+...+++.++. .++.... +.
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~---------------------~~ 363 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS---------------------LR 363 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC---------------------HH
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC---------------------HH
Confidence 45556677788999999999888776665442 1111110 00
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
..+. ...+++.....+.+....................+ ..
T Consensus 364 ~~i~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------ 404 (590)
T 3h1t_A 364 QGID-----------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI----------PD------------------ 404 (590)
T ss_dssp HHHH-----------HTSSCCEEEEEEEETTCC-----------------------------------------------
T ss_pred HHhh-----------CCccCCcEEEEeeeeeecccccccccccccccccc----------cc------------------
Confidence 0000 01123333333333222111100000000000000 00
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH---hcCCeEEEEecchhHHHHHHHHHHhcCce--------
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ---RTGHRVLLFSTMTKLLDILEEYLQWRQLV-------- 1370 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~---atGhKVLIFSQ~t~~LDiLed~L~~rGik-------- 1370 (2240)
..+........+....+...+...|..+. ..+.|+||||+.+.+++.|.+.|...+..
T Consensus 405 -----------~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 473 (590)
T 3h1t_A 405 -----------GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDY 473 (590)
T ss_dssp ---------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTS
T ss_pred -----------ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCe
Confidence 00000000011111222233322232221 34689999999999999999999876543
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCC---cceE
Q 000099 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ---KREV 1447 (2240)
Q Consensus 1371 y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQ---KKeV 1447 (2240)
+..++|.++ ++|.+++++|++++.++.+||+||+++++|||++.+++||+|+++||+..|+|++||++|+|+ +..+
T Consensus 474 ~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~ 552 (590)
T 3h1t_A 474 VARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWF 552 (590)
T ss_dssp EEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCE
T ss_pred EEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEE
Confidence 678999986 479999999998888888999999999999999999999999999999999999999999995 5678
Q ss_pred EEEEEeh
Q 000099 1448 KVIYMEA 1454 (2240)
Q Consensus 1448 ~VyrLvT 1454 (2240)
.||.++.
T Consensus 553 ~I~D~~g 559 (590)
T 3h1t_A 553 NIIDYTG 559 (590)
T ss_dssp EEEECSS
T ss_pred EEEecCC
Confidence 8998873
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.98 E-value=1.4e-30 Score=312.12 Aligned_cols=313 Identities=17% Similarity=0.183 Sum_probs=222.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. |+.||.+++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999986 677999999999999988777766543333455899999975 77899999999986 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCchh-HHHH-Hhhcc-ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES-VLAR-DLDRY-RCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~S-Klsk-aLk~L-ks~ 1151 (2240)
.+..+.|........ .......+|+|+|++.+..... .+...+|++|||||||++.+... .... .+..+ ...
T Consensus 119 ~~~~~~g~~~~~~~~---~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~ 195 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDI---LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195 (400)
T ss_dssp CEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred eEEEEeCCcchHHHH---HHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCc
Confidence 777777776544332 1224578999999999865432 23345789999999999876432 2222 22233 245
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..++||||+-. ++..+ +..++..|+.....
T Consensus 196 ~~i~lSAT~~~----~~~~~--------------~~~~~~~~~~~~~~-------------------------------- 225 (400)
T 1s2m_A 196 QSLLFSATFPL----TVKEF--------------MVKHLHKPYEINLM-------------------------------- 225 (400)
T ss_dssp EEEEEESCCCH----HHHHH--------------HHHHCSSCEEESCC--------------------------------
T ss_pred eEEEEEecCCH----HHHHH--------------HHHHcCCCeEEEec--------------------------------
Confidence 68999999621 11110 01111111100000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
.+. ..+........+
T Consensus 226 --~~~--~~~~~~~~~~~~------------------------------------------------------------- 240 (400)
T 1s2m_A 226 --EEL--TLKGITQYYAFV------------------------------------------------------------- 240 (400)
T ss_dssp --SSC--BCTTEEEEEEEC-------------------------------------------------------------
T ss_pred --ccc--ccCCceeEEEEe-------------------------------------------------------------
Confidence 000 000000001000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
....|+..|..++.. ..+.++||||+....++.+.++|...|+.+..+||.++.++|..+++.|+
T Consensus 241 -------------~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 305 (400)
T 1s2m_A 241 -------------EERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR 305 (400)
T ss_dssp -------------CGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred -------------chhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHh
Confidence 112345555555554 25679999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++... +|++|+++++|||++++++||+||++||+..|+||+||++|.|++..|.+++-
T Consensus 306 ~g~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~ 363 (400)
T 1s2m_A 306 QGKVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 363 (400)
T ss_dssp TTSSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEEC
T ss_pred cCCCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEec
Confidence 75544 78999999999999999999999999999999999999999998877666543
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=3.5e-30 Score=310.03 Aligned_cols=315 Identities=18% Similarity=0.214 Sum_probs=225.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+. |+.||.++|.+|.. .+
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 699999999999886 678999999999999998877766553334557899999976 78899999999875 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcc-ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY-RCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L-ks~ 1151 (2240)
.+..+.|+........ ......+|+|+|++.+.... ..+....|++|||||||++.+.. ..+...+..+ ...
T Consensus 135 ~~~~~~g~~~~~~~~~---~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIR---KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp CEEEECTTSCHHHHHH---HHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred EEEEEECCCCHHHHHH---HhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 6677777654443321 22346799999999987653 23445579999999999987644 3334444444 345
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..++|||||-. ++..++. .++..|.....
T Consensus 212 ~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~--------------------------------- 240 (410)
T 2j0s_A 212 QVVLISATLPH----EILEMTN--------------KFMTDPIRILV--------------------------------- 240 (410)
T ss_dssp EEEEEESCCCH----HHHTTGG--------------GTCSSCEEECC---------------------------------
T ss_pred eEEEEEcCCCH----HHHHHHH--------------HHcCCCEEEEe---------------------------------
Confidence 78999999721 1111111 01111110000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
......++......+.+.
T Consensus 241 --~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 258 (410)
T 2j0s_A 241 --KRDELTLEGIKQFFVAVE------------------------------------------------------------ 258 (410)
T ss_dssp --CGGGCSCTTEEEEEEEES------------------------------------------------------------
T ss_pred --cCccccCCCceEEEEEeC------------------------------------------------------------
Confidence 000000111111111111
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
....|+..|..++... ...++||||+....++.|.++|...|+.+..+||+++.++|..+++.|+
T Consensus 259 -------------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 323 (410)
T 2j0s_A 259 -------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323 (410)
T ss_dssp -------------STTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred -------------cHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHH
Confidence 0011444455555443 3569999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++... +|++|+++++|||++.+++||+||++|++..|+||+||++|.|++..+.++..
T Consensus 324 ~g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 324 SGASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp HTSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CCCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 86554 78999999999999999999999999999999999999999998877766544
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=8.7e-31 Score=307.78 Aligned_cols=307 Identities=20% Similarity=0.260 Sum_probs=221.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
+|+|||.+++.+++. .+.++|++.+||+|||++++..+..++. .....++|||||.. ++.||.+++.+|++ .+
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 799999999998875 2367899999999999998877766553 23456899999975 77999999999975 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCch--hHHHHHhhcc-ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY-RCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L-ks~ 1151 (2240)
.+..+.|........ ......+|+|+||+.+...... +...+|++|||||||++.+.. ..+...+..+ ...
T Consensus 104 ~v~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 179 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQI----KALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 179 (367)
T ss_dssp CEEEECTTSCHHHHH----HHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred eEEEEECCcchHHHH----hhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCc
Confidence 677777765543322 1223689999999999765432 334578999999999997644 2333444444 345
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
+.++|||||... +..++. .++..+..
T Consensus 180 ~~i~~SAT~~~~----~~~~~~--------------~~~~~~~~------------------------------------ 205 (367)
T 1hv8_A 180 RILLFSATMPRE----ILNLAK--------------KYMGDYSF------------------------------------ 205 (367)
T ss_dssp EEEEECSSCCHH----HHHHHH--------------HHCCSEEE------------------------------------
T ss_pred eEEEEeeccCHH----HHHHHH--------------HHcCCCeE------------------------------------
Confidence 689999998321 111110 01100000
Q ss_pred hhhhhccCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1232 RVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1232 lKkDVekdLP~Kv-E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
+....+... ...+.+
T Consensus 206 ----~~~~~~~~~~~~~~~~------------------------------------------------------------ 221 (367)
T 1hv8_A 206 ----IKAKINANIEQSYVEV------------------------------------------------------------ 221 (367)
T ss_dssp ----EECCSSSSSEEEEEEC------------------------------------------------------------
T ss_pred ----EEecCCCCceEEEEEe------------------------------------------------------------
Confidence 000000000 000000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
....|+..|..++ ...+.++||||+....++.+.++|...|+.+..+||+++.++|..+++.|
T Consensus 222 --------------~~~~~~~~l~~~l---~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 222 --------------NENERFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp --------------CGGGHHHHHHHHH---CSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHH---hcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 0112333343333 35678999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+++... +|++|+++++|||++.+++||+||++||+..+.|++||++|.|++..|.+++.
T Consensus 285 ~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 285 KQKKIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp HTTSSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred HcCCCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEc
Confidence 975544 78999999999999999999999999999999999999999999888776653
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=312.04 Aligned_cols=317 Identities=19% Similarity=0.223 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
..|++||.+++.+++. +.++|++.+||+|||++++..+...+......+.+|||||.. |+.||.+++.+++. .
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 3799999999998886 677999999999999998777776554344567899999976 78899999999864 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhccc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk-s 1150 (2240)
+.+..+.|......... .......+|+|+|++.+..... .+....|++|||||||++.+.. ..+...+..+. .
T Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 214 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQ--KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 214 (414)
T ss_dssp CCEEECCCCTTHHHHHH--HHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTT
T ss_pred ceEEEEECCcchHHHHH--HHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCC
Confidence 56666666655443321 2334678999999999876532 3445568999999999985432 44555555553 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.+.++|||||-. ++..++.. ++..+........
T Consensus 215 ~~~i~~SAT~~~----~~~~~~~~--------------~~~~~~~~~~~~~----------------------------- 247 (414)
T 3eiq_A 215 TQVVLLSATMPS----DVLEVTKK--------------FMRDPIRILVKKE----------------------------- 247 (414)
T ss_dssp CEEEEECSCCCH----HHHHHHTT--------------TCSSCEEECCCCC-----------------------------
T ss_pred CeEEEEEEecCH----HHHHHHHH--------------HcCCCEEEEecCC-----------------------------
Confidence 568999999821 11111110 0111100000000
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
. ..++...... .
T Consensus 248 ----~--~~~~~~~~~~--------------------------------------------------------------~ 259 (414)
T 3eiq_A 248 ----E--LTLEGIRQFY--------------------------------------------------------------I 259 (414)
T ss_dssp ----C--CCTTSCCEEE--------------------------------------------------------------E
T ss_pred ----c--cCCCCceEEE--------------------------------------------------------------E
Confidence 0 0000000000 0
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
. ......|+..|..++... .+.++||||+....++.+.+.|...++.+..+||.++.++|..+++.|
T Consensus 260 ~-----------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 260 N-----------VEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp E-----------CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHH
T ss_pred E-----------eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH
Confidence 0 001123666666666543 467999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+++... +|++|+++++|||++.+++||+||++||+..|+||+||++|.|++..+.+++.
T Consensus 327 ~~g~~~---vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 327 RSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp SCC------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEEC
T ss_pred HcCCCc---EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 875544 69999999999999999999999999999999999999999998877766543
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=3.3e-29 Score=297.26 Aligned_cols=314 Identities=16% Similarity=0.166 Sum_probs=219.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
.+|+|||.+++.+++.. ++.++|++.+||+|||++++..+...+......+++|||||.. |+.||..++.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 37999999999988751 2378899999999999998877766554344566899999976 78899999999874 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchh--HHH-HHhhccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES--VLA-RDLDRYR- 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~S--Kls-kaLk~Lk- 1149 (2240)
+.+..+.+..... ......+|+|+|++.+.... ..+...+|++|||||||++.+... ... ..+..+.
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 104 ITSQLIVPDSFEK-------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CCEEEESTTSSCT-------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eeEEEEecCchhh-------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 5555555543322 12346899999999987653 233445799999999999864221 222 2223332
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
....++|||||-. .+..++..+ +..+.....
T Consensus 177 ~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~------------------------------- 207 (395)
T 3pey_A 177 DTQLVLFSATFAD----AVRQYAKKI--------------VPNANTLEL------------------------------- 207 (395)
T ss_dssp TCEEEEEESCCCH----HHHHHHHHH--------------SCSCEEECC-------------------------------
T ss_pred CcEEEEEEecCCH----HHHHHHHHh--------------CCCCeEEEc-------------------------------
Confidence 3568999999721 111111111 000000000
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
.... ...+......+.+
T Consensus 208 --~~~~--~~~~~~~~~~~~~----------------------------------------------------------- 224 (395)
T 3pey_A 208 --QTNE--VNVDAIKQLYMDC----------------------------------------------------------- 224 (395)
T ss_dssp --CGGG--CSCTTEEEEEEEC-----------------------------------------------------------
T ss_pred --cccc--cccccccEEEEEc-----------------------------------------------------------
Confidence 0000 0000000000000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
.....|+..|..++.. ..+.++||||+....++.+.++|...++.+..+||+++.++|.++++.
T Consensus 225 --------------~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 225 --------------KNEADKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDD 288 (395)
T ss_dssp --------------SSHHHHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred --------------CchHHHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHH
Confidence 0012244444444433 246899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC------ChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW------NP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
|+++... +|++|+++++|||++++++||+||+|| |+..|+|++||++|.|++..+.++..
T Consensus 289 f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 354 (395)
T 3pey_A 289 FREGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354 (395)
T ss_dssp HHTTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HHCCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEe
Confidence 9976554 799999999999999999999999999 99999999999999998887777654
No 22
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=2.6e-30 Score=306.47 Aligned_cols=202 Identities=17% Similarity=0.208 Sum_probs=152.7
Q ss_pred CCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc-cc-
Q 000099 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF-SD- 1317 (2240)
Q Consensus 1240 LP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~-~~- 1317 (2240)
.|.+.|+++.|.||..|+.+|+.+.......+ .................+.+.+|+||+|||||+|+...+ ..
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I-----~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~ 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDI-----LRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHH-----HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHH-----HHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcc
Confidence 48999999999999999999999865321111 111111111112335688999999999999999985322 11
Q ss_pred ----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcC
Q 000099 1318 ----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (2240)
Q Consensus 1318 ----ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~ 1393 (2240)
...+.++..||||.+|+++|..+.+.+||||||||++.++|+|++||..+|+.|+|+||++...+ .+ ..
T Consensus 95 ~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k------~~ 167 (328)
T 3hgt_A 95 LITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA------AN 167 (328)
T ss_dssp SCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------
T ss_pred ccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh------cc
Confidence 12456788999999999999999999999999999999999999999999999999999965432 22 12
Q ss_pred CCCccEEEEecccccccCC-----CCCCCeEEEcCCCCChhhH-HHHhhhhhcc--CCcceEEEEEEeh
Q 000099 1394 DSDCFIFLLSIRAAGRGLN-----LQSADTVIIYDPDPNPKNE-EQAVARAHRI--GQKREVKVIYMEA 1454 (2240)
Q Consensus 1394 Ds~~fVfLLSTrAGGeGLN-----LQaADtVIifD~pWNP~~d-~QAiGRAhRI--GQKKeV~VyrLvT 1454 (2240)
+..++|||+ |++||.|+| |.+||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++
T Consensus 168 ~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 168 DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 456888887 568888886 8999999999999999998 9999999999 7899999999987
No 23
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=8.4e-29 Score=304.30 Aligned_cols=312 Identities=18% Similarity=0.221 Sum_probs=221.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-----CCCCeEEEechH-HHHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-----NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-----~~GP~LIVVP~S-LL~QW~~Ef~Kw~ 1073 (2240)
+++|+|..++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 699999999998875 788999999999999988776655443322 245799999976 7889999999997
Q ss_pred C--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhc
Q 000099 1074 P--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (2240)
Q Consensus 1074 P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~ 1147 (2240)
. .+++.+++|+....... .......+|+|+|++.+..... .+...++++|||||||++.+.. ..+...+..
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~---~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQN---ECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred ccCCcEEEEEECCCCHHHHH---HHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 4 46666777765443322 1223578999999999976532 3344578999999999997643 334444444
Q ss_pred c---ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1148 Y---RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1148 L---ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
+ .....+++|||+- .++..+.... +..+....
T Consensus 231 ~~~~~~~q~l~~SAT~~----~~~~~~~~~~--------------l~~~~~i~--------------------------- 265 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFP----EEIQRMAGEF--------------LKNYVFVA--------------------------- 265 (434)
T ss_dssp TTSCSSCEEEEEESCCC----HHHHHHHHTT--------------CSSCEEEE---------------------------
T ss_pred cCCCCCceEEEEeccCC----HHHHHHHHHh--------------ccCCEEEE---------------------------
Confidence 3 3456899999972 1222211110 00000000
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
...+..........++.|
T Consensus 266 --------~~~~~~~~~~i~~~~~~~------------------------------------------------------ 283 (434)
T 2db3_A 266 --------IGIVGGACSDVKQTIYEV------------------------------------------------------ 283 (434)
T ss_dssp --------ESSTTCCCTTEEEEEEEC------------------------------------------------------
T ss_pred --------eccccccccccceEEEEe------------------------------------------------------
Confidence 000000000001111111
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
....|...|..+|.. .+.++||||+....++.|.++|...|+.+..+||+++..+|.
T Consensus 284 --------------------~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~ 340 (434)
T 2db3_A 284 --------------------NKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 340 (434)
T ss_dssp --------------------CGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH
Confidence 012244444444443 345699999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.+++.|+++... +|++|+++++|||++.+++||+||+||++..|+||+||++|.|++..+.+|+
T Consensus 341 ~~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 341 QALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp HHHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 999999976555 7999999999999999999999999999999999999999999988776664
No 24
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2e-28 Score=294.60 Aligned_cols=316 Identities=21% Similarity=0.244 Sum_probs=217.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC------------------CCCeEEEechH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN------------------YGPHLIIVPNA 1060 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~------------------~GP~LIVVP~S 1060 (2240)
..|+|+|.+++..++. +.+.|++.+||+|||++++..+...+...+. ...+|||||+.
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 3799999999987765 7789999999999999877655544332221 24689999975
Q ss_pred -HHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccC
Q 000099 1061 -VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1061 -LL~QW~~Ef~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLK 1135 (2240)
|+.||.+++.+|+. ++.+..++|+....... .......+|+|+|++.+..... .+....+++|||||||++.
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI---RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML 188 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH---HHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhh
Confidence 78899999999864 56777777765543322 1223468999999999976532 2444578999999999986
Q ss_pred Cch--hHHHHHhhc--cc---cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000099 1136 DRE--SVLARDLDR--YR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (2240)
Q Consensus 1136 N~~--SKlskaLk~--Lk---s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l 1208 (2240)
... ..+...+.. +. ....+++|||+-. ++..++. .++..++.....
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~~--------- 241 (417)
T 2i4i_A 189 DMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYIFLAVG--------- 241 (417)
T ss_dssp HTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCEEEEEC---------
T ss_pred ccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCEEEEeC---------
Confidence 432 233333332 11 3468999999721 1111111 111111000000
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHH
Q 000099 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288 (2240)
Q Consensus 1209 ~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~a 1288 (2240)
......+.....++.+.
T Consensus 242 --------------------------~~~~~~~~i~~~~~~~~------------------------------------- 258 (417)
T 2i4i_A 242 --------------------------RVGSTSENITQKVVWVE------------------------------------- 258 (417)
T ss_dssp ------------------------------CCSSEEEEEEECC-------------------------------------
T ss_pred --------------------------CCCCCccCceEEEEEec-------------------------------------
Confidence 00000011111111111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcC
Q 000099 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368 (2240)
Q Consensus 1289 k~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rG 1368 (2240)
...|...|..++... ..+.++||||+....++.+.++|...|
T Consensus 259 -------------------------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 259 -------------------------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp -------------------------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred -------------------------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 112334444444432 356799999999999999999999999
Q ss_pred ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1369 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1369 iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+.+..+||.++.++|..+++.|++++.. +|++|+++++|||++.+++||+||++|++..|+|++||++|.|+...+.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 377 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEE
Confidence 9999999999999999999999986655 7999999999999999999999999999999999999999999887666
Q ss_pred EEEE
Q 000099 1449 VIYM 1452 (2240)
Q Consensus 1449 VyrL 1452 (2240)
+++.
T Consensus 378 ~~~~ 381 (417)
T 2i4i_A 378 SFFN 381 (417)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=5.8e-29 Score=289.50 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=208.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||.+++.+++. +.++|++++||+|||++++..+... ..++|||||.. ++.||..++.+|.. ++
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 699999999999885 6789999999999999887766432 45899999975 78999999999875 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lks-~ 1151 (2240)
.+..++|........ ......+|+|+|++.+.... ..+...+|++|||||||++.+.. ..+...+..+.. .
T Consensus 86 ~~~~~~~~~~~~~~~----~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQI----NRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp CEEEECTTSCHHHHH----HHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred cEEEEECCcchHHHH----hhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 777777765443221 12245899999999997643 23344578999999999986433 233334444443 4
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..+++||||-.. +..++ ..++..+....
T Consensus 162 ~~~~~SAT~~~~----~~~~~--------------~~~~~~~~~~~---------------------------------- 189 (337)
T 2z0m_A 162 ITGLFSATIPEE----IRKVV--------------KDFITNYEEIE---------------------------------- 189 (337)
T ss_dssp EEEEEESCCCHH----HHHHH--------------HHHSCSCEEEE----------------------------------
T ss_pred EEEEEeCcCCHH----HHHHH--------------HHhcCCceeee----------------------------------
Confidence 466789998321 11111 11111110000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
.. ..++......+.+...
T Consensus 190 --~~--~~~~~~~~~~~~~~~~---------------------------------------------------------- 207 (337)
T 2z0m_A 190 --AC--IGLANVEHKFVHVKDD---------------------------------------------------------- 207 (337)
T ss_dssp --CS--GGGGGEEEEEEECSSS----------------------------------------------------------
T ss_pred --cc--cccCCceEEEEEeChH----------------------------------------------------------
Confidence 00 0000001111111000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
...+...+. ...+.++||||+....++.+.+.|. .+..++|+++..+|.++++.|+
T Consensus 208 ------------------~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~ 263 (337)
T 2z0m_A 208 ------------------WRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFR 263 (337)
T ss_dssp ------------------SHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHH
Confidence 000000111 1357899999999999999999887 5788999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++... +|++|+++++|||++.+++||+||++||+..|.|++||++|.|++..|.+|..
T Consensus 264 ~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 264 EGEYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TTSCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cCCCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 76554 79999999999999999999999999999999999999999999988888765
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=3.6e-30 Score=306.47 Aligned_cols=315 Identities=15% Similarity=0.171 Sum_probs=116.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+......+++|||||.. ++.||.+++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3799999999999887 678999999999999997766665544344556899999974 78899999999975 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s 1150 (2240)
+.+..+.|......... .....+|+|+|++.+..... .+...+|++|||||||++.+. ...+...+..+. .
T Consensus 118 ~~~~~~~g~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~ 193 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAE----GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 193 (394)
T ss_dssp CCEEEECSSCCHHHHHH----HHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred eeEEEEeCCCchHHHHh----hcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCC
Confidence 67777777654432221 12267999999999876532 344457999999999998532 233444444443 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.++++|||||-. ++..++ ..++..|.
T Consensus 194 ~~~i~~SAT~~~----~~~~~~--------------~~~~~~~~------------------------------------ 219 (394)
T 1fuu_A 194 TQVVLLSATMPN----DVLEVT--------------TKFMRNPV------------------------------------ 219 (394)
T ss_dssp CEEEEECSSCCH----HHHHHH--------------HHHCCSCE------------------------------------
T ss_pred ceEEEEEEecCH----HHHHHH--------------HHhcCCCe------------------------------------
Confidence 568999999831 111111 11111110
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
. +.+.-.. .. ...+ .... ..+
T Consensus 220 --------------~--~~~~~~~--~~-~~~~-------------------------------~~~~----~~~----- 240 (394)
T 1fuu_A 220 --------------R--ILVKKDE--LT-LEGI-------------------------------KQFY----VNV----- 240 (394)
T ss_dssp --------------E--EEECC----------------------------------------------------------
T ss_pred --------------E--EEecCcc--cc-CCCc-------------------------------eEEE----EEc-----
Confidence 0 0000000 00 0000 0000 000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
.....|...|..++... .+.++||||+....++.+.+.|...++.+..+||+++.++|..+++.|
T Consensus 241 -------------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 305 (394)
T 1fuu_A 241 -------------EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 305 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHH
Confidence 00012444455555432 457999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+++... +|++|+++++|||++.+++||+||++|++..|.|++||++|.|++..|.+++.
T Consensus 306 ~~~~~~---vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 364 (394)
T 1fuu_A 306 RSGSSR---ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 364 (394)
T ss_dssp --------------------------------------------------------------
T ss_pred HCCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEc
Confidence 875544 78999999999999999999999999999999999999999998877766543
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=7.5e-28 Score=288.17 Aligned_cols=315 Identities=17% Similarity=0.182 Sum_probs=218.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---P 1074 (2240)
..++|||.+++..++.. .+.+.|++.+||+|||++++..+...+......+.+|||||.. |+.||...+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 37999999999888751 3478899999999999998776665544344455899999977 6788888777765 5
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhccccCcceEecccccccCC--chh-HHHHHhhcc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKD--RES-VLARDLDRY 1148 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrLKN--~~S-KlskaLk~L 1148 (2240)
.+.+.+..+...... ......+|+|+|++.+.... ..+...+|++|||||||++.. ... .....+..+
T Consensus 124 ~~~~~~~~~~~~~~~------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 197 (412)
T 3fht_A 124 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 (412)
T ss_dssp TCCEEEECTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS
T ss_pred cceEEEeecCcchhh------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC
Confidence 677777766543321 12345799999999997654 233345799999999999854 222 223333333
Q ss_pred c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
. ....++|||||-. +++.++..+ +..+..... .
T Consensus 198 ~~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~-----~----------------------- 231 (412)
T 3fht_A 198 PRNCQMLLFSATFED----SVWKFAQKV--------------VPDPNVIKL-----K----------------------- 231 (412)
T ss_dssp CTTCEEEEEESCCCH----HHHHHHHHH--------------SSSCEEECC-----C-----------------------
T ss_pred CCCceEEEEEeecCH----HHHHHHHHh--------------cCCCeEEee-----c-----------------------
Confidence 3 3468999999832 222211111 100000000 0
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
. ....++......+.+.
T Consensus 232 ------~-~~~~~~~~~~~~~~~~-------------------------------------------------------- 248 (412)
T 3fht_A 232 ------R-EEETLDTIKQYYVLCS-------------------------------------------------------- 248 (412)
T ss_dssp ------G-GGSSCTTEEEEEEECS--------------------------------------------------------
T ss_pred ------c-ccccccCceEEEEEcC--------------------------------------------------------
Confidence 0 0000000011111100
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
....|+..|..++... .+.++||||+....++.|.++|...++.+..+||.++.++|..++
T Consensus 249 -----------------~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 309 (412)
T 3fht_A 249 -----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 309 (412)
T ss_dssp -----------------SHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred -----------------ChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Confidence 0112455555555542 467999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCCh------hhHHHHhhhhhccCCcceEEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP------~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+.|+++... +|++|+++++|||++++++||+||+||++ ..|+|++||++|.|+...+.+++.
T Consensus 310 ~~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 377 (412)
T 3fht_A 310 ERFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 377 (412)
T ss_dssp HHHHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HHHHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEc
Confidence 999976554 79999999999999999999999999876 699999999999998777666543
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=1.2e-26 Score=281.12 Aligned_cols=304 Identities=17% Similarity=0.231 Sum_probs=212.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-sl 1076 (2240)
.+|+|||.+++..++. +.+.|++.+||+|||+.++..+..+. ...+.+|||||+. |+.||..+|.+|++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 4689999999988875 66899999999999996666555443 3456899999975 78999999999986 77
Q ss_pred eEEEEecchhhHhH-HHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC-------------chhH-H
Q 000099 1077 SCIYYVGAKDQRSR-LFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-------------RESV-L 1141 (2240)
Q Consensus 1077 kVvvy~GskdeRk~-l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN-------------~~SK-l 1141 (2240)
++..++|+.....+ .....+.....+|+|+|++.+......+...++++|||||||++.. .... +
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~ 172 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 172 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHH
Confidence 88888887654211 1111233456899999999998776666667899999999998732 1112 2
Q ss_pred HHHhhcc------------ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1142 ARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1142 skaLk~L------------ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
...+..+ .....+++||||....+.+.+ +..++......
T Consensus 173 ~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~~~------------- 223 (414)
T 3oiy_A 173 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGR------------- 223 (414)
T ss_dssp HHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCSSC-------------
T ss_pred HHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCcCc-------------
Confidence 2333333 345689999997554422111 00000000000
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHH
Q 000099 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak 1289 (2240)
....+......+.
T Consensus 224 ---------------------------~~~~~~~i~~~~~---------------------------------------- 236 (414)
T 3oiy_A 224 ---------------------------LVSVARNITHVRI---------------------------------------- 236 (414)
T ss_dssp ---------------------------CCCCCCSEEEEEE----------------------------------------
T ss_pred ---------------------------cccccccchheee----------------------------------------
Confidence 0000111111100
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCc
Q 000099 1290 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (2240)
Q Consensus 1290 ~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGi 1369 (2240)
...|...|..+|.. .+.++||||+....++.|.++|...|+
T Consensus 237 ------------------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 237 ------------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp ------------------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 01233444445544 358999999999999999999999999
Q ss_pred eEE-eecCCCCHHHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCC-CCeEEEcCCC--CChhhHHHHhhhhhcc
Q 000099 1370 VYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPD--PNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1370 ky~-rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQa-ADtVIifD~p--WNP~~d~QAiGRAhRI 1441 (2240)
.+. .+||. +|. ++.|++++.+ +|++ |+++++|||+++ +++||+||+| +++..|+|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 99994 444 9999976544 5666 999999999999 9999999999 9999999999999999
Q ss_pred CCc--ceEEEEEEe
Q 000099 1442 GQK--REVKVIYME 1453 (2240)
Q Consensus 1442 GQK--KeV~VyrLv 1453 (2240)
|+. +.-.++.|+
T Consensus 349 g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE 362 (414)
T ss_dssp ETTEECCEEEEEEC
T ss_pred CCCCCcceEEEEEE
Confidence 975 344455543
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=1e-26 Score=293.09 Aligned_cols=306 Identities=17% Similarity=0.172 Sum_probs=220.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
..++|+|.+++..++. +.++|+..+||+|||++++..+. . ..+.+|||+|+. |+.+|..++.++ ++.
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~----~~g~~lvi~P~~aL~~q~~~~l~~~--gi~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--L----LNGLTVVVSPLISLMKDQVDQLQAN--GVA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--H----SSSEEEEECSCHHHHHHHHHHHHHT--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--H----hCCCEEEECChHHHHHHHHHHHHHc--CCc
Confidence 3799999999999885 67899999999999987764443 1 136799999975 788899999986 566
Q ss_pred EEEEecchhhHhH-HHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCch---hHHHHHh----hc
Q 000099 1078 CIYYVGAKDQRSR-LFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE---SVLARDL----DR 1147 (2240)
Q Consensus 1078 Vvvy~GskdeRk~-l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~---SKlskaL----k~ 1147 (2240)
+.++++....... ...........+|+++|++.+... ...+...++.+|||||||.+.... ...+..+ ..
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 6667665432211 111234456789999999999643 234555789999999999996532 1222222 33
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
+....+++|||||......++...+.+-.|.++.. .+
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~--------------------------------- 208 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF--------------------------------- 208 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC---------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC---------------------------------
Confidence 44567899999996555555555444322211100 00
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
..|.....++.
T Consensus 209 -----------~r~~l~~~v~~---------------------------------------------------------- 219 (523)
T 1oyw_A 209 -----------DRPNIRYMLME---------------------------------------------------------- 219 (523)
T ss_dssp -----------CCTTEEEEEEE----------------------------------------------------------
T ss_pred -----------CCCceEEEEEe----------------------------------------------------------
Confidence 00100000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
...++..|..+|.. ..+.++||||..+..++.+.++|...|+.+..+||+++.++|..++
T Consensus 220 ------------------~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 220 ------------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp ------------------CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 01122233333332 2567999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+.|..++.. +|++|.++|+|||++++++||+||+|||+..|.|++||++|.|+...+.+++
T Consensus 280 ~~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 280 EKFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp HHHHTTSCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred HHHHcCCCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 999976654 7899999999999999999999999999999999999999999888776654
No 30
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=2e-26 Score=292.68 Aligned_cols=324 Identities=17% Similarity=0.212 Sum_probs=216.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHC-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWL- 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~S-LL~QW~~Ef~Kw~- 1073 (2240)
.|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 699999999988772 13567899999999999998777766554332 234789999975 7789999999874
Q ss_pred -----CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCch--hHHHH
Q 000099 1074 -----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (2240)
Q Consensus 1074 -----PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~~--SKlsk 1143 (2240)
+.+.+..+.|+......+. .......+|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~ 198 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMN--KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHH--HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hcccccceEEEEEECCccHHHHHH--HHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHH
Confidence 4566777777655443321 23345789999999999765322 223468999999999987543 22222
Q ss_pred Hhhcc---c-----cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHH
Q 000099 1144 DLDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215 (2240)
Q Consensus 1144 aLk~L---k-----s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~l 1215 (2240)
.+..+ . ....++||||+-. .+. .++..++. .+....
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~---~~~~~~l~--------------~~~~~~------------------ 242 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSATLDD-KVQ---KLANNIMN--------------KKECLF------------------ 242 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCT-HHH---HHTTTTCC--------------SSEEEE------------------
T ss_pred HHHHhhhhhcccccCceEEEEeccCCh-HHH---HHHHHHcC--------------CCceEE------------------
Confidence 22222 1 3468999999632 111 11111100 000000
Q ss_pred HHHHHHHHhhHHHHHhhhhhhccCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHH
Q 000099 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 1294 (2240)
Q Consensus 1216 ii~RLhklLrPFmLRRlKkDVekdLP~KvE-~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL 1294 (2240)
+... ............ ..+.+.-.
T Consensus 243 -------------~~~~-~~~~~~~~~~i~~~~~~~~~~----------------------------------------- 267 (579)
T 3sqw_A 243 -------------LDTV-DKNEPEAHERIDQSVVISEKF----------------------------------------- 267 (579)
T ss_dssp -------------EESS-CSSSCSSCTTEEEEEEEESST-----------------------------------------
T ss_pred -------------Eeec-CccccccccccceEEEEecch-----------------------------------------
Confidence 0000 000000000111 11111000
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhc---Cc
Q 000099 1295 NNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QL 1369 (2240)
Q Consensus 1295 ~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~r---Gi 1369 (2240)
...+...+..++..+. ..+.++||||.....++.|.+.|... ++
T Consensus 268 -------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~ 316 (579)
T 3sqw_A 268 -------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 316 (579)
T ss_dssp -------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTS
T ss_pred -------------------------------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCC
Confidence 0011122222222222 35789999999999999999999987 99
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
.+..+||.++..+|..+++.|+.+... +||+|+++++|||++.+++||+||+||++..|+|++||++|.|+...+.+
T Consensus 317 ~v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 393 (579)
T 3sqw_A 317 PILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 393 (579)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred cEEEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE
Confidence 999999999999999999999975544 79999999999999999999999999999999999999999998877766
Q ss_pred EEE
Q 000099 1450 IYM 1452 (2240)
Q Consensus 1450 yrL 1452 (2240)
++.
T Consensus 394 ~~~ 396 (579)
T 3sqw_A 394 FIC 396 (579)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=4e-26 Score=287.39 Aligned_cols=324 Identities=18% Similarity=0.211 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechH-HHHHHHHHHHHHC-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNA-VLVNWKSELHKWL- 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~----~GP~LIVVP~S-LL~QW~~Ef~Kw~- 1073 (2240)
.|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||||+. |+.||..+|.+++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 699999999988872 135678999999999999988777665543321 24789999975 7788999999863
Q ss_pred -----CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCch--hHHHH
Q 000099 1074 -----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (2240)
Q Consensus 1074 -----PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~~--SKlsk 1143 (2240)
+.+.+..+.|......... .......+|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~ 249 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMN--KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 249 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHH--HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hccccCceeEEEEECCcCHHHHHH--HHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHH
Confidence 3456676777654433221 23345789999999999764322 122358999999999986543 22222
Q ss_pred Hhhcc---c-----cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHH
Q 000099 1144 DLDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215 (2240)
Q Consensus 1144 aLk~L---k-----s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~l 1215 (2240)
.+..+ . ....++||||+-. . +..++..+.. .+....
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SAT~~~-~---v~~~~~~~~~--------------~~~~~~------------------ 293 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSATLDD-K---VQKLANNIMN--------------KKECLF------------------ 293 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCT-H---HHHHTTTTCC--------------SSEEEE------------------
T ss_pred HHHhhhhccccCccCceEEEEEccCCH-H---HHHHHHHhcC--------------CCceEE------------------
Confidence 22222 1 3358999999732 1 1111111100 000000
Q ss_pred HHHHHHHHhhHHHHHhhhhhhccCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHH
Q 000099 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 1294 (2240)
Q Consensus 1216 ii~RLhklLrPFmLRRlKkDVekdLP~KvE-~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL 1294 (2240)
+. .............. ..+.+...
T Consensus 294 -------------~~-~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 318 (563)
T 3i5x_A 294 -------------LD-TVDKNEPEAHERIDQSVVISEKF----------------------------------------- 318 (563)
T ss_dssp -------------EE-SSCSSSCSSCTTEEEEEEEESST-----------------------------------------
T ss_pred -------------Ee-ccCCCCccccccCceEEEECchh-----------------------------------------
Confidence 00 00000000000111 11111000
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhc---Cc
Q 000099 1295 NNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QL 1369 (2240)
Q Consensus 1295 ~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~r---Gi 1369 (2240)
.......+..++..+. ..+.++||||.....++.+.++|... ++
T Consensus 319 -------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~ 367 (563)
T 3i5x_A 319 -------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 367 (563)
T ss_dssp -------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred -------------------------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCc
Confidence 0001111222222222 45789999999999999999999987 99
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
.+..+||.++..+|..+++.|+.+... +||+|+++++|||++.+++||+||+|+++..|+|++||++|.|....+.+
T Consensus 368 ~v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 444 (563)
T 3i5x_A 368 PILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 444 (563)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEE
Confidence 999999999999999999999986544 79999999999999999999999999999999999999999998777766
Q ss_pred EEE
Q 000099 1450 IYM 1452 (2240)
Q Consensus 1450 yrL 1452 (2240)
++.
T Consensus 445 ~~~ 447 (563)
T 3i5x_A 445 FIC 447 (563)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=5.2e-26 Score=290.72 Aligned_cols=309 Identities=16% Similarity=0.126 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Pslk 1077 (2240)
..++|||.+++..++. +.++|+..+||+|||++++..+.. ..+.+|||+|+ +|+.+|...|.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 3799999999998886 778999999999999877655432 24689999996 5788999999998 677
Q ss_pred EEEEecchhhH--hHHHHHHH--hhcCCcEEEEcHHHHHHh---hh----hccccCcceEecccccccCCch-------h
Q 000099 1078 CIYYVGAKDQR--SRLFSQEV--AALKFNVLVTTYEFIMYD---RS----KLSKVDWKYIIIDEAQRMKDRE-------S 1139 (2240)
Q Consensus 1078 Vvvy~GskdeR--k~l~~qei--~~~~fdVVITTYE~L~kD---~s----~L~kikWd~VIIDEAHrLKN~~-------S 1139 (2240)
+.++.|..... ...+. .. .....+|+|+|++.+... .. .+....+.+|||||||.+.... .
T Consensus 111 ~~~l~~~~~~~~~~~~~~-~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~ 189 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHA-EMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYK 189 (591)
T ss_dssp EEECCSSCCHHHHHHHHH-HHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGG
T ss_pred EEEEeCCCCHHHHHHHHH-HhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHH
Confidence 77777654322 22211 12 346789999999988532 12 2223478999999999986432 1
Q ss_pred HHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000099 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (2240)
Q Consensus 1140 KlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~R 1219 (2240)
.+......+....+|+|||||-.....++..+|.+-.+..+.. .
T Consensus 190 ~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------~-------------------------- 233 (591)
T 2v1x_A 190 ALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------S-------------------------- 233 (591)
T ss_dssp GGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------C--------------------------
T ss_pred HHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------C--------------------------
Confidence 2222223445667999999995433333333222111100000 0
Q ss_pred HHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
...|.....+....
T Consensus 234 ------------------~~r~nl~~~v~~~~------------------------------------------------ 247 (591)
T 2v1x_A 234 ------------------FNRPNLYYEVRQKP------------------------------------------------ 247 (591)
T ss_dssp ------------------CCCTTEEEEEEECC------------------------------------------------
T ss_pred ------------------CCCcccEEEEEeCC------------------------------------------------
Confidence 00011100110000
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCC
Q 000099 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGs 1377 (2240)
..+...+..++..+. ..+.++||||..+..++.|..+|...|+.+..+||+
T Consensus 248 ---------------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~ 300 (591)
T 2v1x_A 248 ---------------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHAN 300 (591)
T ss_dssp ---------------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred ---------------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 001111222222222 146899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1378 Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++.++|..++++|..++.. +||+|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.+++-
T Consensus 301 l~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~ 372 (591)
T 2v1x_A 301 LEPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG 372 (591)
T ss_dssp SCHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEC
Confidence 9999999999999976555 79999999999999999999999999999999999999999998887776643
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=1.5e-25 Score=304.57 Aligned_cols=305 Identities=17% Similarity=0.203 Sum_probs=217.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.+++|||.+++.+++.....+. ++||+++||+|||++++..+..+.. ....+|||||+. |+.||..+|.++++.
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 4789999999999998666554 7899999999999998765544432 335899999987 678899999999875
Q ss_pred --CeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcccc-
Q 000099 1076 --VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC- 1150 (2240)
Q Consensus 1076 --lkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks- 1150 (2240)
+.+.+++|.. ..+...+ .....+..+|+|+|++.+.++ +...+|++|||||||++.. .....+..+..
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~-~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l~~l~~~ 751 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERIKAMRAN 751 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHHHHhcCC
Confidence 5667776643 2332222 234456799999999988543 3345789999999999743 34455555543
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.++|+|||||+.+.+...+. .+..+.+
T Consensus 752 ~~vl~lSATp~p~~l~~~~~--~~~~~~~--------------------------------------------------- 778 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMS--GMRDLSI--------------------------------------------------- 778 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHT--TTSEEEE---------------------------------------------------
T ss_pred CCEEEEcCCCChhhHHHHHh--cCCCceE---------------------------------------------------
Confidence 56899999997654221110 0000000
Q ss_pred hhhhhhccCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1231 RRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1231 RlKkDVekdLP~Kv--E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
....|... .......
T Consensus 779 ------i~~~~~~r~~i~~~~~~--------------------------------------------------------- 795 (1151)
T 2eyq_A 779 ------IATPPARRLAVKTFVRE--------------------------------------------------------- 795 (1151)
T ss_dssp ------CCCCCCBCBCEEEEEEE---------------------------------------------------------
T ss_pred ------EecCCCCccccEEEEec---------------------------------------------------------
Confidence 00000000 0000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHH
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReea 1386 (2240)
..+..++..++..+ ..+.+|||||+.+..++.+.+.|... ++.+..+||.++..+|.++
T Consensus 796 ------------------~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~i 856 (1151)
T 2eyq_A 796 ------------------YDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 856 (1151)
T ss_dssp ------------------CCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHH
Confidence 00111222233332 35789999999999999999999988 8899999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCC-CCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP-DPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~-pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++|+++..+ +||+|+++++|||++++++||+++. .|++..+.|++||++|.|++..|++++
T Consensus 857 l~~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 857 MNDFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp HHHHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred HHHHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 9999976555 7999999999999999999999999 589999999999999999776665543
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=9.3e-27 Score=291.91 Aligned_cols=315 Identities=16% Similarity=0.158 Sum_probs=192.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkV 1078 (2240)
.|++||.+++..++.. .+.+.||+.+||+|||++++..+...+......+.+|||||.. |+.||.++|.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999887752 2478899999999999998777766654444456899999976 889999999999865433
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc---hhHHHHHhhccc-cce
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR-CQR 1152 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~Lk-s~~ 1152 (2240)
.+..+...... .......+|+|+|++.+.... ..+....|++|||||||++... ...+...+..+. ...
T Consensus 219 ~~~~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~ 293 (508)
T 3fho_A 219 KTAFGIKDSVP-----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 293 (508)
T ss_dssp CEEC---------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCE
T ss_pred eEEEEeCCccc-----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCe
Confidence 33322221111 112347899999999987643 2334457899999999998642 223333333443 345
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.++|||||- +.+.++.. .+ +..+....... ..
T Consensus 294 ~i~lSAT~~-~~~~~~~~---~~--------------~~~~~~i~~~~--~~---------------------------- 325 (508)
T 3fho_A 294 IVLFSATFS-ERVEKYAE---RF--------------APNANEIRLKT--EE---------------------------- 325 (508)
T ss_dssp EEEEESCCS-THHHHHHH---HH--------------STTCEEECCCC--CC----------------------------
T ss_pred EEEEeCCCC-HHHHHHHH---Hh--------------cCCCeEEEecc--cc----------------------------
Confidence 799999983 21222211 00 00000000000 00
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
. ..+......+.+.
T Consensus 326 ---~--~~~~~~~~~~~~~------------------------------------------------------------- 339 (508)
T 3fho_A 326 ---L--SVEGIKQLYMDCQ------------------------------------------------------------- 339 (508)
T ss_dssp ---------CCCCEEEEC--------------------------------------------------------------
T ss_pred ---C--CcccceEEEEECC-------------------------------------------------------------
Confidence 0 0000000011100
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs 1392 (2240)
....|...|..++... .+.++||||+.+..++.|...|...++.+..+||+++..+|..+++.|++
T Consensus 340 ------------~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~ 405 (508)
T 3fho_A 340 ------------SEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV 405 (508)
T ss_dssp -------------CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS
T ss_pred ------------chHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 0112333333333332 45799999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEecccccccCCCCCCCeEEEcCCC------CChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1393 ~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p------WNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+... +|++|+++++|||++++++||+||++ +++..+.|++||++|.|+...+.++..
T Consensus 406 g~~~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~ 468 (508)
T 3fho_A 406 GTSK---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVH 468 (508)
T ss_dssp SSCC---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEEC
T ss_pred CCCe---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEe
Confidence 6555 79999999999999999999999999 789999999999999998877776653
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=1e-26 Score=287.63 Aligned_cols=314 Identities=18% Similarity=0.221 Sum_probs=110.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHH---CC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKW---LP 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw---~P 1074 (2240)
..++|+|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||.. |..||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3799999999998875 23477899999999999998766655443333444799999977 667776666554 56
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCCc--h-hHHHHHhhcc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--E-SVLARDLDRY 1148 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN~--~-SKlskaLk~L 1148 (2240)
.+.+.+..+...... ......+|+|+|++.+..... .+...++++|||||||++... . ......+..+
T Consensus 191 ~~~~~~~~~~~~~~~------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp TCCEEEESTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred CceEEEEeCCccccc------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 777777766543221 113356899999999976542 333457899999999998542 2 2223333333
Q ss_pred c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
. ....+++||||-. +++.+...+.+
T Consensus 265 ~~~~~~i~~SAT~~~----~~~~~~~~~~~-------------------------------------------------- 290 (479)
T 3fmp_B 265 PRNCQMLLFSATFED----SVWKFAQKVVP-------------------------------------------------- 290 (479)
T ss_dssp CTTSEEEEEESCCCH----HHHHHHHHHSS--------------------------------------------------
T ss_pred CccceEEEEeCCCCH----HHHHHHHHHcC--------------------------------------------------
Confidence 3 3468999999832 22222221111
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
......+. ...... ..+. +.-..|+
T Consensus 291 --------------~~~~i~~~----~~~~~~-~~~~-----------------------------------~~~~~~~- 315 (479)
T 3fmp_B 291 --------------DPNVIKLK----REEETL-DTIK-----------------------------------QYYVLCS- 315 (479)
T ss_dssp --------------SEEEEEEC----------------------------------------------------------
T ss_pred --------------CCeEEecc----ccccCc-CCce-----------------------------------EEEEEeC-
Confidence 10000000 000000 0000 0000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
....|+..|..++... .+.++||||+....++.|...|...++.+..+||+++..+|..++
T Consensus 316 -----------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 376 (479)
T 3fmp_B 316 -----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 376 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHH
Confidence 0011223333333321 346899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCCh------hhHHHHhhhhhccCCcceEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP------~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+.|+.+..+ +||+|+++++|||++++++||+||+||++ ..|+|++||++|.|....+.+++
T Consensus 377 ~~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 377 ERFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999976555 79999999999999999999999999876 69999999999999877766554
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.92 E-value=8.4e-25 Score=286.57 Aligned_cols=307 Identities=18% Similarity=0.222 Sum_probs=208.9
Q ss_pred CCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-- 1074 (2240)
+|+++|.+++..++.-...+ .+.||+.+||+|||++++..+...+.. ...+|||||+. |..||..+|.+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999998755433 478999999999999998877766642 25799999986 67899999999986
Q ss_pred CCeEEEEecchhhH--hHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc-cccc
Q 000099 1075 SVSCIYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1151 (2240)
Q Consensus 1075 slkVvvy~GskdeR--k~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~-Lks~ 1151 (2240)
++++.+++|+.... ...+ ..+..+..+|+|+|++.+... +...++++|||||+|++.... ...+.. ....
T Consensus 445 gi~v~~l~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~ 517 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIK-SGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMV 517 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHH-HHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCC
T ss_pred CceEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCCCC
Confidence 57888888865432 2222 234456799999999988543 334578999999999984221 111221 2346
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
+.|+|||||+...+... .+ +..
T Consensus 518 ~vL~mSATp~p~tl~~~----~~------g~~------------------------------------------------ 539 (780)
T 1gm5_A 518 DTLVMSATPIPRSMALA----FY------GDL------------------------------------------------ 539 (780)
T ss_dssp CEEEEESSCCCHHHHHH----HT------CCS------------------------------------------------
T ss_pred CEEEEeCCCCHHHHHHH----Hh------CCc------------------------------------------------
Confidence 79999999965432211 00 000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
...+...+|+....+...-.
T Consensus 540 -~~s~i~~~p~~r~~i~~~~~----------------------------------------------------------- 559 (780)
T 1gm5_A 540 -DVTVIDEMPPGRKEVQTMLV----------------------------------------------------------- 559 (780)
T ss_dssp -SCEEECCCCSSCCCCEECCC-----------------------------------------------------------
T ss_pred -ceeeeeccCCCCcceEEEEe-----------------------------------------------------------
Confidence 00001112221100000000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecch--------hHHHHHHHHHHh---cCceEEeecCCCCH
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW---RQLVYRRIDGTTSL 1380 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t--------~~LDiLed~L~~---rGiky~rLDGsTs~ 1380 (2240)
...+...+...+.+....+++++|||... ..++.+.+.|.. .++.+..+||.++.
T Consensus 560 --------------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~ 625 (780)
T 1gm5_A 560 --------------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQ 625 (780)
T ss_dssp --------------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCC
T ss_pred --------------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCH
Confidence 00011112223333345577788888754 346677777877 47889999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1381 eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
++|..++++|++++.+ +||+|+++++|||++++++||+||+++ +...+.|++||++|.|+...|.+++
T Consensus 626 ~eR~~v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 626 EEKDRVMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp SCSHHHHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred HHHHHHHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 9999999999976555 699999999999999999999999995 7899999999999999887776553
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2e-23 Score=280.55 Aligned_cols=357 Identities=18% Similarity=0.109 Sum_probs=217.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl 1076 (2240)
+.+|+|||.+++.++.. +.+.|++.+||+|||+++...+...+. ..+++|||+|. .|..||..+|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 45799999999999876 678999999999999998766665553 23689999997 578899999999987
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-cc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s~ 1151 (2240)
.+.+++|.... ....+|+|+|++.+..... .....+|++|||||+|++.+. ...+...+..+. ..
T Consensus 155 ~vglltGd~~~----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 DVGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp CEEEECSSCEE----------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred CEEEEeCCCcc----------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 56667775432 1256899999999875422 222347899999999999765 333344444554 45
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
+.|+||||+ . +..++...+..+. ..+....
T Consensus 225 ~il~LSATi-~-n~~e~a~~l~~~~--------------~~~~~vi---------------------------------- 254 (1010)
T 2xgj_A 225 RYVFLSATI-P-NAMEFAEWICKIH--------------SQPCHIV---------------------------------- 254 (1010)
T ss_dssp EEEEEECCC-T-THHHHHHHHHHHH--------------TSCEEEE----------------------------------
T ss_pred eEEEEcCCC-C-CHHHHHHHHHhhc--------------CCCeEEE----------------------------------
Confidence 689999995 2 2233322222110 0000000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH-HcCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK-TCNHPLL 1310 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRK-ICNHP~L 1310 (2240)
....-|....+.++..-.. .+| ..++.. ..+....+... +..+.. ....+.-
T Consensus 255 ----~~~~rp~pl~~~~~~~~~~---~~~--------~~~~~~---------~~~~~~~~~~~---~~~l~~~~~~~~~~ 307 (1010)
T 2xgj_A 255 ----YTNFRPTPLQHYLFPAHGD---GIY--------LVVDEK---------STFREENFQKA---MASISNQIGDDPNS 307 (1010)
T ss_dssp ----EECCCSSCEEEEEEETTSS---CCE--------EEECTT---------CCBCHHHHHHH---HHTCC---------
T ss_pred ----ecCCCcccceEEEEecCCc---cee--------eeeccc---------cccchHHHHHH---HHHHhhhhcccccc
Confidence 0000111111111110000 000 000000 00000000000 000000 0000000
Q ss_pred CCCCccccchhhHhhc-cc-HHHHHHHHHHHHHhc-CCeEEEEecchhHHHHHHHHHHhcCce-----------------
Q 000099 1311 NYPYFSDLSKDFLVKS-CG-KLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV----------------- 1370 (2240)
Q Consensus 1311 ~~p~~~~ls~d~Lirs-SG-KLelLdrIL~kL~at-GhKVLIFSQ~t~~LDiLed~L~~rGik----------------- 1370 (2240)
..+ ............ .+ ....+..++..+... +.++||||..+..++.+...|...++.
T Consensus 308 ~~~-~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 386 (1010)
T 2xgj_A 308 TDS-RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 386 (1010)
T ss_dssp ----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHT
T ss_pred ccc-ccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 000 000000000000 00 022344455555444 458999999999999999988765442
Q ss_pred ----------------------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cCC
Q 000099 1371 ----------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDP 1424 (2240)
Q Consensus 1371 ----------------------y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD~ 1424 (2240)
+..+||+++..+|..+++.|+.+..+ +|++|+++++|||++++++||+ ||.
T Consensus 387 ~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~ 463 (1010)
T 2xgj_A 387 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDG 463 (1010)
T ss_dssp TSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECS
T ss_pred hcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCC
Confidence 67799999999999999999976555 7999999999999999999999 999
Q ss_pred ----CCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1425 ----DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1425 ----pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|++..|.|++||++|.|+.....+|.++.
T Consensus 464 ~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~ 497 (1010)
T 2xgj_A 464 QQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497 (1010)
T ss_dssp SCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEEC
T ss_pred cCCccCCHHHHhHhhhhcccCCCCCceEEEEEEC
Confidence 999999999999999999977777776654
No 38
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.91 E-value=1.1e-25 Score=267.15 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=153.9
Q ss_pred CCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccc-cccccccccCC----------CCCccccCCcccc
Q 000099 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIA-VSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (2240)
Q Consensus 1728 ~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya-~~~d~~~D~~~----------~~Sw~~~~~~~~d 1795 (2240)
+||.++++| .+|++..|||||.+|++||||++ |..+| ++|. ++.++..|+.+ +||+|+ ++
T Consensus 43 ~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~t-I~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~ 114 (311)
T 2r0y_A 43 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIV-----KN 114 (311)
T ss_dssp HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHH-----HH
T ss_pred cCCchhHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHH-----HH
Confidence 578999999 99999999999999999999999 99999 6666 89999999999 899888 55
Q ss_pred cccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCcc
Q 000099 1796 EQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1875 (2240)
Q Consensus 1796 ~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 1875 (2240)
+..|+-.+.+ +|. +
T Consensus 115 A~~l~~~~~~-------------------------------------------------~~~-----------------k 128 (311)
T 2r0y_A 115 SMQVVMLIEF-------------------------------------------------EVL-----------------K 128 (311)
T ss_dssp HHHHHHHHHH-------------------------------------------------HHH-----------------H
T ss_pred HHHHHHHHHH-------------------------------------------------HHh-----------------h
Confidence 5544311111 000 0
Q ss_pred cccCCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHH----H
Q 000099 1876 SRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKL----Q 1951 (2240)
Q Consensus 1876 ~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kL----~ 1951 (2240)
. +.+ . + .. . . + +..| ..+++.|..|+... .
T Consensus 129 ~-k~~--------------~---~-~~-~----i------------------~--~~~k--~~l~~~~~~l~~~~~~~i~ 162 (311)
T 2r0y_A 129 A-KNL--------------K---R-NY-L----I------------------N--SEVK--AKLLHYLNKLVDATEKKIN 162 (311)
T ss_dssp H-HTG--------------G---G-CC-B----C------------------C--HHHH--HHHHHHHHHHHHCCHHHHH
T ss_pred c-ccC--------------C---C-CC-C----C------------------C--hHHH--HHHHHHHHHHHhhhHHHHH
Confidence 0 000 0 0 01 0 0 0 0000 12334455544211 1
Q ss_pred ----H-hh---ccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 000099 1952 ----R-RI---EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGF 2023 (2240)
Q Consensus 1952 ----~-~~---d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~ 2023 (2240)
+ +. ..+||.++++|+.+|++.++||||+| |++||||.+|++||++++|.++.+|+.||+|||.||+.||++
T Consensus 163 ~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~ 241 (311)
T 2r0y_A 163 QALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDP 241 (311)
T ss_dssp HHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHhccccccccccCCccHHHHhCCCChhhcccHHHH-hCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 0 11 23578999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHh-CCCCh
Q 000099 2024 SHEVRSEARKVHDLFFDLLKIA-FPDTD 2050 (2240)
Q Consensus 2024 ~sev~~dA~~L~~~F~~~~k~~-fP~~~ 2050 (2240)
+|.||.+|..|+++|..+|+.. +|+..
T Consensus 242 ~s~i~~~A~~L~~~f~~~~~~~~~p~~~ 269 (311)
T 2r0y_A 242 SALIYKDATTLTNYFNYLIQKEFFPELQ 269 (311)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 9999999999999999999984 66443
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.91 E-value=2.9e-25 Score=268.62 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=159.9
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccc-cccccccccCC-------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIA-VSGDSHMDHQQ------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya-~~~d~~~D~~~------- 1782 (2240)
....+++.. ...+|.++.+| .+|++..|||||.+|++||||++ |..+| ++|. ++.++..|+.+
T Consensus 82 ~~~~~l~~l-----~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~t-I~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 82 FISFTLDVL-----IDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp HHHHHHHHH-----HHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHH-HHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 334455544 33678899999 99999999999999999999999 99998 5665 79999999999
Q ss_pred ---CCCccccCCcccccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhh
Q 000099 1783 ---SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859 (2240)
Q Consensus 1783 ---~~Sw~~~~~~~~d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1859 (2240)
+||+|+ .++..|+-.+.+ +|.
T Consensus 154 yN~~~s~i~-----~~a~~l~~~~~~-------------------------------------------------~~~-- 177 (361)
T 2r10_A 154 YNEYDSLIV-----KNSMQVVMLIEF-------------------------------------------------EVL-- 177 (361)
T ss_dssp HBCSSSHHH-----HHHHHHHHHHHH-------------------------------------------------HHH--
T ss_pred cCCCCCHHH-----HHHHHHHHHHHH-------------------------------------------------HHh--
Confidence 899988 655544311111 000
Q ss_pred cCCccccCCCCCCCcccccCCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHH
Q 000099 1860 GESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVI 1939 (2240)
Q Consensus 1860 ~~~~~~~~~q~~~~~~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~m 1939 (2240)
+. ..+ +.. + .. + +. ....+
T Consensus 178 ---------------k~-k~~------------------~~~-~----~i------------------~--~~--~k~~l 196 (361)
T 2r10_A 178 ---------------KA-KNL------------------KRN-Y----LI------------------N--SE--VKAKL 196 (361)
T ss_dssp ---------------HH-HTT------------------TTC-C----BC------------------C--HH--HHHHH
T ss_pred ---------------hc-ccc------------------CCc-C----cC------------------C--HH--HHHHH
Confidence 00 000 000 1 00 0 00 01223
Q ss_pred HHHHHHHHHHHH----Hh--------hccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHH
Q 000099 1940 QRRCKNVISKLQ----RR--------IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2007 (2240)
Q Consensus 1940 q~kck~vl~kL~----~~--------~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2007 (2240)
++.|..|++... .. ...+||.++++|+.+|++.++||||+| |++||||.+|..||+.++|.++++|+
T Consensus 197 ~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 275 (361)
T 2r10_A 197 LHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFI 275 (361)
T ss_dssp HHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHH
T ss_pred HHHHHHhhccchHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHH-hcCcccHHHHHHHHhcCCCCCHHHHH
Confidence 344555543211 00 023588999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHH-hCCCChhHH
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI-AFPDTDFRE 2053 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~-~fP~~~f~~ 2053 (2240)
.||.|||.||+.||+++|.||.+|..|+++|..+|+. ++|+....+
T Consensus 276 ~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~p~~~~~~ 322 (361)
T 2r10_A 276 IDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPELQDLN 322 (361)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcCCcchhhc
Confidence 9999999999999999999999999999999999997 466443333
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.5e-22 Score=262.91 Aligned_cols=324 Identities=15% Similarity=0.106 Sum_probs=210.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slk 1077 (2240)
.|+|+|.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. ++.+|..++.++.+ ++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999863 23478899999999999999977665544322 36899999987 78889999966543 678
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhccccceE
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQRR 1153 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lks~~R 1153 (2240)
+..++|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.+ ....+...+..+...+.
T Consensus 105 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 105 VAMTSGDYDTDDA------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp EEECCSCSSSCCG------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEEEeCCCCCchh------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 8888886433221 123689999999988654221 1123679999999999864 22233344445567789
Q ss_pred EEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000099 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (2240)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlK 1233 (2240)
++||||+- +..+ |.+||..+.....
T Consensus 179 i~lSATl~--n~~~------------------~~~~l~~~~~~~~----------------------------------- 203 (715)
T 2va8_A 179 LALSATIS--NYKQ------------------IAKWLGAEPVATN----------------------------------- 203 (715)
T ss_dssp EEEESCCT--THHH------------------HHHHHTCEEEECC-----------------------------------
T ss_pred EEEcCCCC--CHHH------------------HHHHhCCCccCCC-----------------------------------
Confidence 99999973 2333 3333332110000
Q ss_pred hhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000099 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (2240)
Q Consensus 1234 kDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p 1313 (2240)
.-|-.....+...-... ....+ .+.
T Consensus 204 -----~r~~~l~~~~~~~~~~~-----------~~~~~---------------------------------------~~~ 228 (715)
T 2va8_A 204 -----WRPVPLIEGVIYPERKK-----------KEYNV---------------------------------------IFK 228 (715)
T ss_dssp -----CCSSCEEEEEEEECSST-----------TEEEE---------------------------------------EET
T ss_pred -----CCCCCceEEEEecCCcc-----------cceee---------------------------------------ecC
Confidence 00101111111000000 00000 000
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcC-------------------------
Q 000099 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ------------------------- 1368 (2240)
Q Consensus 1314 ~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rG------------------------- 1368 (2240)
. .....+.....++. ++.++...++++||||.....++.+...|....
T Consensus 229 ~---~~~~~~~~~~~~~~----~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 229 D---NTTKKVHGDDAIIA----YTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp T---SCEEEEESSSHHHH----HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred c---chhhhcccchHHHH----HHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 0 00000000011222 223333568899999999999999988887542
Q ss_pred -----------ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cC-------CCC
Q 000099 1369 -----------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-------PDP 1426 (2240)
Q Consensus 1369 -----------iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD-------~pW 1426 (2240)
..+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .++
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 2478899999999999999999975544 7999999999999999999999 99 899
Q ss_pred ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1427 NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1427 NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
++..+.|+.|||+|.|+.+.-.+|.+.+
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 9999999999999999887777777765
No 41
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=6.6e-23 Score=266.12 Aligned_cols=315 Identities=16% Similarity=0.123 Sum_probs=211.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slk 1077 (2240)
+|+|||.+++..+.. +.+.|++.+||+|||+++...+...+. ..+.+|||+|.. ++.+|..++.+|.+ +++
T Consensus 25 ~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHH---hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 799999999988553 788999999999999999766665543 246899999987 78899999976654 578
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhcc----c
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY----R 1149 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~L----k 1149 (2240)
+..++|....... .....+|+|+|++.+...... ....++++|||||+|.+.+ ....+...+..+ .
T Consensus 98 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 98 IGISTGDYESRDE------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp EEEECSSCBCCSS------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred EEEEeCCCCcchh------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 8888886543221 124789999999988654221 1123678999999999875 222233333333 3
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
..+.++||||+- +..+ |.+||..+.....
T Consensus 172 ~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~~------------------------------- 200 (702)
T 2p6r_A 172 ALRVIGLSATAP--NVTE------------------IAEWLDADYYVSD------------------------------- 200 (702)
T ss_dssp TCEEEEEECCCT--THHH------------------HHHHTTCEEEECC-------------------------------
T ss_pred CceEEEECCCcC--CHHH------------------HHHHhCCCcccCC-------------------------------
Confidence 467899999962 2333 3333332111000
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
.-|-..+..+...- ....... . . .
T Consensus 201 ---------~r~~~l~~~~~~~~---------------~~~~~~~-~-~---~--------------------------- 224 (702)
T 2p6r_A 201 ---------WRPVPLVEGVLCEG---------------TLELFDG-A-F---S--------------------------- 224 (702)
T ss_dssp ---------CCSSCEEEEEECSS---------------EEEEEET-T-E---E---------------------------
T ss_pred ---------CCCccceEEEeeCC---------------eeeccCc-c-h---h---------------------------
Confidence 00111111111000 0000000 0 0 0
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc----------------------
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1367 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r---------------------- 1367 (2240)
.. ..-.+... +.++...++++||||..+..++.+...|...
T Consensus 225 ----~~---------~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~ 287 (702)
T 2p6r_A 225 ----TS---------RRVKFEEL----VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEM 287 (702)
T ss_dssp ----EE---------EECCHHHH----HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHH
T ss_pred ----hh---------hhhhHHHH----HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccc
Confidence 00 00002222 2233346889999999999998888887643
Q ss_pred --------CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cC---CCCChhhHH
Q 000099 1368 --------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD---PDPNPKNEE 1432 (2240)
Q Consensus 1368 --------Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD---~pWNP~~d~ 1432 (2240)
++.+..+||+++.++|..+++.|.++..+ +|++|+++++|||++++++||. || .++++..+.
T Consensus 288 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 288 SRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp HHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHH
T ss_pred cHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHH
Confidence 12456699999999999999999976544 7999999999999999999999 77 789999999
Q ss_pred HHhhhhhccCCcceEEEEEEeh
Q 000099 1433 QAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1433 QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|++|||+|.|+.+...+|.+.+
T Consensus 365 Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 365 QMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp HHHTTBSCTTTCSCEEEEEECC
T ss_pred HHhhhcCCCCCCCCceEEEEec
Confidence 9999999999888877777765
No 42
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=219.85 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=110.9
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHH
Q 000099 1929 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2008 (2240)
Q Consensus 1929 ~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2008 (2240)
...+.+.++.++++|+.||+.|.+.+|..||.++++|+.+|++.++||||++ |++||||.+|++||+.++|.++++|..
T Consensus 4 ~~~~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~ 82 (123)
T 2dat_A 4 GSSGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLGDLEK 82 (123)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHH-CSSCCCHHHHHHHHTTTCCCSHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHH
Confidence 3455678899999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2009 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2009 DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||+|||+||+.||+++|.||.+|..|+++|..+++..
T Consensus 83 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 83 DVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999998854
No 43
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-22 Score=273.08 Aligned_cols=348 Identities=16% Similarity=0.067 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
.+|+|||.+++..+.. +.+.|++.+||+|||++++..|...+. ..+.+|||+|.. |..||..+|.+++. .
T Consensus 183 f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 4799999999988754 788999999999999998877766653 345899999976 77889999999987 4
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCch--hHHHHHhhccc-cce
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQR 1152 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk-s~~ 1152 (2240)
+.+++|.... ....+|+|+|++.+...... ....++.+|||||||++.+.. ..+...+..+. ..+
T Consensus 254 VglltGd~~~----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~q 323 (1108)
T 3l9o_A 254 VGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 323 (1108)
T ss_dssp EEEECSSCBC----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSE
T ss_pred ccEEeCcccc----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCce
Confidence 5566675432 24579999999988764321 112368899999999997642 23333444444 456
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.|+||||. .|. .++..++..+... |.....
T Consensus 324 vl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~---------------------------------- 353 (1108)
T 3l9o_A 324 YVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVY---------------------------------- 353 (1108)
T ss_dssp EEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEE----------------------------------
T ss_pred EEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEe----------------------------------
Confidence 89999993 333 3333333222110 000000
Q ss_pred hhhhccCCCCceEEEEEe-----------ccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1233 VEDVEGSLPPKVSIVLRC-----------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c-----------~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
...-|....+.++. .........|........... .. ... .. ... ..
T Consensus 354 ----~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~----~~-----~~~----~~-~~~----~~ 411 (1108)
T 3l9o_A 354 ----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI----GD-----DPN----ST-DSR----GK 411 (1108)
T ss_dssp ----ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------------------
T ss_pred ----cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhh----cc-----ccc----cc-ccc----cc
Confidence 00001111111110 001111111111111000000 00 000 00 000 00
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc-CCeEEEEecchhHHHHHHHHHHhcCce----------
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV---------- 1370 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~at-GhKVLIFSQ~t~~LDiLed~L~~rGik---------- 1370 (2240)
+... + . .. .........+..++..+... +.++||||.....++.+...|...++.
T Consensus 412 ~~~~-----~---~---~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 412 KGQT-----Y---K---GG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred cccc-----c---c---cc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 0000 0 0 00 00000123344455555443 469999999999999999988654333
Q ss_pred -----------------------------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE
Q 000099 1371 -----------------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (2240)
Q Consensus 1371 -----------------------------y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi 1421 (2240)
+..+||+++..+|..+++.|..+..+ +|++|+++++|||++++++||+
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~ 554 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFT 554 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEES
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEe
Confidence 67899999999999999999986665 7999999999999999999999
Q ss_pred cCCCCChhh--------HHHHhhhhhccCCcceEEEEEEeh
Q 000099 1422 YDPDPNPKN--------EEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1422 fD~pWNP~~--------d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
++.+|++.. |+|++||++|.|......+|.+..
T Consensus 555 ~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~ 595 (1108)
T 3l9o_A 555 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 595 (1108)
T ss_dssp CSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEEC
T ss_pred cCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Confidence 998886654 999999999999877777776644
No 44
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=2.8e-22 Score=260.90 Aligned_cols=315 Identities=15% Similarity=0.104 Sum_probs=210.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~P-slk 1077 (2240)
.|+|||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|. .++.+|..++.+|.+ +++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999999752 22377899999999999999855554433222 3689999997 578899999976654 678
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhccc-cce
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1152 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lk-s~~ 1152 (2240)
+..++|......+ .....+|+|+|++.+...... ....++++|||||+|.+.. ....+...+..++ ..+
T Consensus 98 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 98 VAMATGDYDSKDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp EEEECSCSSCCCG------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EEEecCCCCcccc------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 8888885433221 124689999999988654221 1123678999999999875 2233333444444 567
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.|+||||+- +..+ |.+||..+....
T Consensus 172 ii~lSATl~--n~~~------------------~~~~l~~~~~~~----------------------------------- 196 (720)
T 2zj8_A 172 IIGLSATIG--NPEE------------------LAEWLNAELIVS----------------------------------- 196 (720)
T ss_dssp EEEEECCCS--CHHH------------------HHHHTTEEEEEC-----------------------------------
T ss_pred EEEEcCCcC--CHHH------------------HHHHhCCcccCC-----------------------------------
Confidence 899999962 2333 333332111000
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
..-|-.....+...- .+.... ..
T Consensus 197 -----~~rp~~l~~~~~~~~---------------~~~~~~--------~~----------------------------- 219 (720)
T 2zj8_A 197 -----DWRPVKLRRGVFYQG---------------FVTWED--------GS----------------------------- 219 (720)
T ss_dssp -----CCCSSEEEEEEEETT---------------EEEETT--------SC-----------------------------
T ss_pred -----CCCCCcceEEEEeCC---------------eeeccc--------cc-----------------------------
Confidence 000111111111000 000000 00
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc------------------C------
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------Q------ 1368 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r------------------G------ 1368 (2240)
. . ....++..+ .++...++++||||..+..++.+...|... +
T Consensus 220 --~-~-------~~~~~~~~~----~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 285 (720)
T 2zj8_A 220 --I-D-------RFSSWEELV----YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285 (720)
T ss_dssp --E-E-------ECSSTTHHH----HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHH
T ss_pred --h-h-------hhhHHHHHH----HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccc
Confidence 0 0 001112222 223346789999999999998888888643 1
Q ss_pred ---------ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cC----CCCChhhH
Q 000099 1369 ---------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD----PDPNPKNE 1431 (2240)
Q Consensus 1369 ---------iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD----~pWNP~~d 1431 (2240)
..+..+||+++.++|..+++.|.++..+ +|++|.++++|||++++++||. || .|+++..+
T Consensus 286 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~ 362 (720)
T 2zj8_A 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEV 362 (720)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHH
T ss_pred hHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHH
Confidence 2378899999999999999999975544 7999999999999999999998 88 68999999
Q ss_pred HHHhhhhhccCCcceEEEEEEeh
Q 000099 1432 EQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.|++|||+|.|+.+.-.+|.+.+
T Consensus 363 ~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 363 HQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHhhcCCCCCCCCceEEEEec
Confidence 99999999999887777777755
No 45
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.89 E-value=4e-24 Score=249.07 Aligned_cols=199 Identities=12% Similarity=0.107 Sum_probs=151.4
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...|||||.+|++||||++ |..+|+.|.|.++.++..|+.+ ++|+++ ..+..|
T Consensus 30 ~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~l 103 (265)
T 3uv5_A 30 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 103 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHH
T ss_pred CCchhhhCCCChhhcCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHH-----HHHHHH
Confidence 357889 89999999999999999999999 9999999999999999999998 778777 443332
Q ss_pred cccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCcccccC
Q 000099 1800 QPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1879 (2240)
Q Consensus 1800 ~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~ 1879 (2240)
+-...+ .|..+.
T Consensus 104 ~~~~~~-------------------------------------------------~~~~~~------------------- 115 (265)
T 3uv5_A 104 LDLCDE-------------------------------------------------KLKEKE------------------- 115 (265)
T ss_dssp HHHHHH-------------------------------------------------HHHHTH-------------------
T ss_pred HHHHHH-------------------------------------------------HHHHHh-------------------
Confidence 211000 000000
Q ss_pred CCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhhccCCC
Q 000099 1880 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGH 1959 (2240)
Q Consensus 1880 lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr 1959 (2240)
+...... +.++..... .-+..|..++..+... .-..+
T Consensus 116 ----------------------------~~~~~~e------k~i~p~~dd--------~~~~~~~~il~~i~~~-~l~~~ 152 (265)
T 3uv5_A 116 ----------------------------DKLARLE------KAINPLLDD--------DDQVAFSFILDNIVTQ-KMMAV 152 (265)
T ss_dssp ----------------------------HHHHHHH------HHHSTTTTC--------HHHHHHHHHHHHHHHH-TTTTS
T ss_pred ----------------------------hhhhhhh------hhhhhcccc--------chhhHHHHHHHHHHHH-HHHhh
Confidence 0001111 222322111 1133355555443221 12357
Q ss_pred cchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000099 1960 QIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 2039 (2240)
Q Consensus 1960 ~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~ 2039 (2240)
..+++|+.+|++..+||||++ |++||||.+|..||+.+.|.++.+|..||.|||+||+.||+++|.||.+|..|+++|.
T Consensus 153 ~~~~~F~~pv~~~~~pdY~~i-Ik~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~ 231 (265)
T 3uv5_A 153 PDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 231 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHhCCCChhHhCcHHHH-hCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 000099 2040 DLLKIAFP 2047 (2240)
Q Consensus 2040 ~~~k~~fP 2047 (2240)
+.|+.+-.
T Consensus 232 ~~~~~~~~ 239 (265)
T 3uv5_A 232 QTLTEYDE 239 (265)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 99987643
No 46
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.89 E-value=2.5e-23 Score=217.34 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=110.0
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHH
Q 000099 1929 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2008 (2240)
Q Consensus 1929 ~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2008 (2240)
.....|+...++++|++||+.|.+.+|.+||.++++|+.+|.+.++||||++ |++||||.+|.+||+.++|.++.+|+.
T Consensus 6 ~~k~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~ 84 (124)
T 3mb4_A 6 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLT-IKKPMDMEKIRSHMMANKYQDIDSMVE 84 (124)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHH
T ss_pred CCCccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHH
Confidence 3345588889999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2009 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2009 DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
||+|||.||+.||+++|.+|.+|..|+++|..+++...
T Consensus 85 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 85 DFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998764
No 47
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.88 E-value=2.1e-23 Score=215.42 Aligned_cols=113 Identities=21% Similarity=0.292 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
|+....++|++|++.|.+.+|++||.++++|+.+|++.++||||++ |++||||.+|++||+.++|.++.+|..||+|||
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEV-VSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF 80 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455667999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
.||+.||+++|+||.+|..|+++|..+++..+..
T Consensus 81 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 81 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988763
No 48
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.88 E-value=1.1e-21 Score=263.51 Aligned_cols=375 Identities=17% Similarity=0.116 Sum_probs=217.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Psl 1076 (2240)
+.+|+|||.+++..++. +.+.|++.+||+|||++++..|..+.. ..+.+|||+|.. |+.||..+|.++++++
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999987765 678999999999999987766665543 235799999965 7899999999999888
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-cc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s~ 1151 (2240)
.+..++|.... ....+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+. ..
T Consensus 110 ~v~~l~G~~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQI----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCEE----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCcc----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 99998886532 2357999999999976532 222346899999999998663 334555555564 35
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..|+|||||- +.. .|.+|+....... . +++
T Consensus 180 ~iIlLSAT~~--n~~------------------ef~~~l~~~~~~~--~--------------------------~vi-- 209 (997)
T 4a4z_A 180 KFILLSATVP--NTY------------------EFANWIGRTKQKN--I--------------------------YVI-- 209 (997)
T ss_dssp EEEEEECCCT--THH------------------HHHHHHHHHHTCC--E--------------------------EEE--
T ss_pred CEEEEcCCCC--ChH------------------HHHHHHhcccCCc--e--------------------------EEE--
Confidence 6899999972 222 3334432100000 0 000
Q ss_pred hhhhhccCCCCceEEEEEe---------ccCHHHHHHHHHHHHc----cCcccCchh--HHhhhhcChhhH---HHHH--
Q 000099 1232 RVEDVEGSLPPKVSIVLRC---------RMSAIQSAIYDWIKAT----GTLRVDPED--EKRRVQKNPIYQ---AKVY-- 1291 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c---------~LS~~Qr~LYk~L~~~----~~l~ld~~~--e~~~l~~~~~~~---ak~~-- 1291 (2240)
.....|...++.++. .........|...... ......... ............ .+..
T Consensus 210 ----~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 285 (997)
T 4a4z_A 210 ----STPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRG 285 (997)
T ss_dssp ----ECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------
T ss_pred ----ecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 000011111111110 0000011111111000 000000000 000000000000 0000
Q ss_pred -HHHHHHHHHHHHHcCCCCCCCCCccccchhhHh---hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc
Q 000099 1292 -KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLV---KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (2240)
Q Consensus 1292 -~sL~nilmqLRKICNHP~L~~p~~~~ls~d~Li---rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r 1367 (2240)
..-...-..-+..+..+.. .......+.. ....++..|..+|.. ....++||||.....++.+..+|...
T Consensus 286 ~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~ 359 (997)
T 4a4z_A 286 GRGNSTRGGANRGGSRGAGA----IGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGI 359 (997)
T ss_dssp -----------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTC
T ss_pred cccccccccccccccccccc----ccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcC
Confidence 0000000000000000000 0000000000 112234444444432 24579999999999999999999776
Q ss_pred Cc---------------------------------------eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000099 1368 QL---------------------------------------VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1368 Gi---------------------------------------ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG 1408 (2240)
++ .+..+||+++..+|..+++.|..+..+ +|++|.+++
T Consensus 360 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a 436 (997)
T 4a4z_A 360 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFA 436 (997)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhh
Confidence 55 468899999999999999999986655 799999999
Q ss_pred ccCCCCCCCeEEEcCCCC---------ChhhHHHHhhhhhccCCcceEEEEEEe
Q 000099 1409 RGLNLQSADTVIIYDPDP---------NPKNEEQAVARAHRIGQKREVKVIYME 1453 (2240)
Q Consensus 1409 eGLNLQaADtVIifD~pW---------NP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (2240)
+|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.+.
T Consensus 437 ~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 437 MGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 9999999 7777766665 999999999999999988887777664
No 49
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=1.1e-21 Score=263.29 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=108.8
Q ss_pred CCcHHHHHHHHHHHHhhc----------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYN----------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSE 1068 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~----------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~E 1068 (2240)
.|||||..++.+++..+. .+.+||+++.||+|||++++.++ .++...+...++|||||. .|..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999999987543 23679999999999999986665 444333444689999995 588999999
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---c-cccCcceEecccccccCCchhHHHHH
Q 000099 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---L-SKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1069 f~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L-~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
|.+|.+.. ++ +... ...+ .........+|+|||++.|...... + ....+.+||||||||+.. ...++.
T Consensus 350 f~~f~~~~---v~-~~~s-~~~l-~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~~~~ 421 (1038)
T 2w00_A 350 YQRFSPDS---VN-GSEN-TAGL-KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEAQKN 421 (1038)
T ss_dssp HHTTSTTC---SS-SSCC-CHHH-HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHHHHH
T ss_pred HHHhcccc---cc-cccC-HHHH-HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHHHHH
Confidence 99998652 11 2111 1111 1122235689999999999864321 1 122689999999999853 223334
Q ss_pred h-hccccceEEEeecCCCCC
Q 000099 1145 L-DRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1145 L-k~Lks~~RLLLTGTPLQN 1163 (2240)
| ..+....+|+|||||...
T Consensus 422 I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 422 LKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHCSSEEEEEEESSCCCS
T ss_pred HHHhCCcccEEEEeCCcccc
Confidence 4 456667899999999864
No 50
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.88 E-value=1.7e-21 Score=264.01 Aligned_cols=277 Identities=15% Similarity=0.222 Sum_probs=190.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PS 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-Ps 1075 (2240)
+.+++|+|..++..++. +.+.|++.+||+|||+.++.++..++ ...+.+|||+|+. |+.||...|.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34799999999988775 67899999999999997666655554 3446799999976 7788999999976 45
Q ss_pred CeEEEEecchhh--HhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch-------------hH
Q 000099 1076 VSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-------------SV 1140 (2240)
Q Consensus 1076 lkVvvy~Gskde--Rk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~-------------SK 1140 (2240)
+++..++|+... +...+ ..+..+.++|+|+|++.+.+....+...++++|||||||++.... ..
T Consensus 149 i~v~~l~Gg~~~~er~~~~-~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFE-KSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHH-HHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred CeEEEEeCCCCHHHHHHHH-HHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 788888887643 21211 234445689999999999877666666689999999999864311 11
Q ss_pred -HHHHhhcc------------ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000099 1141 -LARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (2240)
Q Consensus 1141 -lskaLk~L------------ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~ 1207 (2240)
+...+..+ .....+++||||....+.+.+ +...+...+..
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~i~v~~----------- 280 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGR----------- 280 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTCCCCCB-----------
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhcceeEEecc-----------
Confidence 22333333 234689999997555432211 00000000000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000099 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ 1287 (2240)
.....+......+.
T Consensus 281 ----------------------------~~~~~~~i~~~~~~-------------------------------------- 294 (1104)
T 4ddu_A 281 ----------------------------LVSVARNITHVRIS-------------------------------------- 294 (1104)
T ss_dssp ----------------------------CCCCCCCEEEEEES--------------------------------------
T ss_pred ----------------------------CCCCcCCceeEEEe--------------------------------------
Confidence 00000000001100
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc
Q 000099 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (2240)
Q Consensus 1288 ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r 1367 (2240)
+.|...|..+|.. .+.++||||+.+..++.|..+|...
T Consensus 295 ---------------------------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~ 332 (1104)
T 4ddu_A 295 ---------------------------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF 332 (1104)
T ss_dssp ---------------------------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT
T ss_pred ---------------------------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC
Confidence 1233344444444 3589999999999999999999999
Q ss_pred CceEE-eecCCCCHHHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCC-CCeEEEcCCCC
Q 000099 1368 QLVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDP 1426 (2240)
Q Consensus 1368 Giky~-rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQa-ADtVIifD~pW 1426 (2240)
|+.+. .+|| +|.+ +++|+++..+ +||+ |+++++|||+++ +++||+||+|-
T Consensus 333 g~~~~~~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 333 KFNVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEESSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeeEecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99998 9999 3555 9999986655 6777 999999999999 99999999998
No 51
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.88 E-value=7.3e-23 Score=214.30 Aligned_cols=111 Identities=14% Similarity=0.228 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
+..++++|+++++.|.+.+|++||.++++|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..||+|||+
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEK-ISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
||+.||+++|.+|.+|..|+++|..+++.+.|
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876
No 52
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.87 E-value=1.1e-22 Score=211.39 Aligned_cols=108 Identities=16% Similarity=0.292 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
++.+++.|+.+++.|.+.+|.+||.++++|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAI-IKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
||+.||+++|.||.+|..|+++|..+++.
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 53
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=4.5e-23 Score=243.27 Aligned_cols=196 Identities=12% Similarity=0.142 Sum_probs=148.7
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.+..++..|+.+ ++|+++ ..+..|
T Consensus 63 ~~a~~F~~pV~~~~~pdY~~iIk~PmDL~t-Ik~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~L 136 (292)
T 3aad_A 63 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 136 (292)
T ss_dssp TTCGGGSSSCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHH-----HHHTHH
T ss_pred CcchhhcCCCCchhcccHHHHcCCcCCHHH-HHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHH-----HHHHHH
Confidence 457889 88999999999999999999999 9999999999999999999998 888888 555554
Q ss_pred c-ccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCccccc
Q 000099 1800 Q-PKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRR 1878 (2240)
Q Consensus 1800 ~-~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r 1878 (2240)
. -+.++-..++. ... +...
T Consensus 137 ~~~~~~~~~~~~~-------------------------------------------~~~-----------------~~e~ 156 (292)
T 3aad_A 137 LDLCDEKLKEKED-------------------------------------------KLA-----------------RLEK 156 (292)
T ss_dssp HHTTTTTGGGSHH-------------------------------------------HHH-----------------HHHH
T ss_pred HHHHHhhhhcchh-------------------------------------------hhh-----------------hhhh
Confidence 4 11111100000 000 0000
Q ss_pred CCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHH-HHHhhccC
Q 000099 1879 NLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISK-LQRRIEKE 1957 (2240)
Q Consensus 1879 ~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~k-L~~~~d~~ 1957 (2240)
.+ +|. . .+ ++ . -.+...|++++.. | .
T Consensus 157 ~i------~Pl----------------~-dd-~~-------------------~----~~~~~~l~~i~~~~l------~ 183 (292)
T 3aad_A 157 AI------NPL----------------L-DD-DD-------------------Q----VAFSFILDNIVTQKM------M 183 (292)
T ss_dssp TT------SSS----------------T-TC-HH-------------------H----HHHHHHHHHHHHHTG------G
T ss_pred cc------ccc----------------c-cc-ch-------------------h----HHHHHHHHHHhhhhh------h
Confidence 00 000 0 00 00 0 0122234444422 2 2
Q ss_pred CCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHH
Q 000099 1958 GHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDL 2037 (2240)
Q Consensus 1958 Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~ 2037 (2240)
.+..+++|+.+|++.++||||++ |++||||.+|..||+.++|.++++|..||.|||+||+.||+++|.+|.+|..|+++
T Consensus 184 ~~~~s~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~ 262 (292)
T 3aad_A 184 AVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNV 262 (292)
T ss_dssp GSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred cCcchhHHHhcccccccccHHHH-cCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 000099 2038 FFDLLKIAF 2046 (2240)
Q Consensus 2038 F~~~~k~~f 2046 (2240)
|.+.++.+-
T Consensus 263 ~~~~~~~~~ 271 (292)
T 3aad_A 263 CYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 54
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.85 E-value=7.8e-22 Score=207.82 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=107.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
..-.+.|.+.|+.|+..|.+.+|..||.++++|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|..||.|
T Consensus 12 ~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~i-Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~L 90 (130)
T 3k2j_A 12 DLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQ-IKMPISLQQIRTKLKNQEYETLDHLECDLNL 90 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 344578888999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||.||+.||+++|.||++|..|+++|..+++..
T Consensus 91 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 91 MFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 55
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.85 E-value=7.9e-22 Score=212.15 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHHHHHHHhhc-cCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIE-KEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d-~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
...-...|+.+++.|....+ ..||.++.+|+.+|.+.++||||++ |++||||.+|.+||+.++|.++.+|+.||.|||
T Consensus 22 ~~~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 100 (150)
T 3tlp_A 22 KNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKI-ILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMF 100 (150)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 33446679999999998875 6799999999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC--CCChhHHh
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF--PDTDFREA 2054 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f--P~~~f~~a 2054 (2240)
.||+.||+++|.||.+|..|+++|..+++..+ ||.|+...
T Consensus 101 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~~~~ 142 (150)
T 3tlp_A 101 RNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMAS 142 (150)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhhcCC
Confidence 99999999999999999999999999999999 66666543
No 56
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.85 E-value=1.4e-21 Score=205.67 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=106.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhcc-CCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEK-EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~-~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
-++.++++|+.||+.|....|. .||.++.+|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..||.||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3578999999999999988764 899999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
|.||+.||+++|.||.+|..|+++|...++....
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999987654
No 57
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=202.81 Aligned_cols=111 Identities=23% Similarity=0.413 Sum_probs=103.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhcc--CCCCCHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 2010 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~--~eY~~v~ef~~Dv 2010 (2240)
..|++..+++|..||..|. .|.++.+|+.+.+ .++||||++ |++||||.+|++||+. ++|.++++|+.||
T Consensus 15 ~~m~p~~~~~c~~il~~L~------~~~~s~~F~~Pv~-~~~pdY~~i-Ik~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv 86 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLY------CHEMSLAFQDPVP-LTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 86 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHH------TSGGGGGGSSCCC-TTSTTHHHH-CSSCCCHHHHHHHHHSSSCCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH------hCccchhhcCCCc-ccCCCHHHH-cCCCCCHHHHHHHHhccccCCCCHHHHHHHH
Confidence 3789999999999999997 4678999999554 489999999 9999999999999998 5999999999999
Q ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCChh
Q 000099 2011 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDF 2051 (2240)
Q Consensus 2011 qLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~~f 2051 (2240)
+|||+||+.||+++|.||.+|..|+++|..+|+..||+.+|
T Consensus 87 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 127 (135)
T 2yyn_A 87 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRF 127 (135)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999987
No 58
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.83 E-value=4.9e-20 Score=249.21 Aligned_cols=272 Identities=18% Similarity=0.215 Sum_probs=172.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps- 1075 (2240)
|..+ |+|.+++..++. +.+.|++.+||+|||+.++.++..+. ...+.+|||||+. |+.|+...|.+++..
T Consensus 55 g~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~---~~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLA---LKGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp CSCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHH---TTSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CCCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3358 999999988875 67899999999999984444444433 2346899999976 678899999998764
Q ss_pred -C----eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc--
Q 000099 1076 -V----SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (2240)
Q Consensus 1076 -l----kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-- 1148 (2240)
+ .+..++|+.....+......... .+|+|+|++.+......|. .+++|||||||++.+....+...+..+
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf 203 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGF 203 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTE
T ss_pred CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCc
Confidence 4 67778876544322111111122 8999999999987755544 788999999999877444333333322
Q ss_pred ----------ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000099 1149 ----------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (2240)
Q Consensus 1149 ----------ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~ 1218 (2240)
.....+++|+|.-.. .++. ..|...+
T Consensus 204 ~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~---------------------------- 239 (1054)
T 1gku_B 204 HYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQL---------------------------- 239 (1054)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHH----------------------------
T ss_pred chhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcc----------------------------
Confidence 123467888885322 1000 0000000
Q ss_pred HHHHHhhHHHHHhhhhhhcc-CC-CCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHH
Q 000099 1219 RLHQILEPFMLRRRVEDVEG-SL-PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 1296 (2240)
Q Consensus 1219 RLhklLrPFmLRRlKkDVek-dL-P~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~n 1296 (2240)
+ .+ .+.. .. +....+. .+
T Consensus 240 -----~---~i-----~v~~~~~~~~~i~~~-~~---------------------------------------------- 259 (1054)
T 1gku_B 240 -----L---NF-----DIGSSRITVRNVEDV-AV---------------------------------------------- 259 (1054)
T ss_dssp -----H---CC-----CCSCCEECCCCEEEE-EE----------------------------------------------
T ss_pred -----e---EE-----EccCcccCcCCceEE-Ee----------------------------------------------
Confidence 0 00 0000 00 0000000 00
Q ss_pred HHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecC
Q 000099 1297 RCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1376 (2240)
Q Consensus 1297 ilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDG 1376 (2240)
...|...|..++.. .+.++||||.....++.|.++|... +.+..+||
T Consensus 260 -----------------------------~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg 306 (1054)
T 1gku_B 260 -----------------------------NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTA 306 (1054)
T ss_dssp -----------------------------SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTT
T ss_pred -----------------------------chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEec
Confidence 01122223333322 2678999999999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCCC-CeEEEcCCC
Q 000099 1377 TTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQSA-DTVIIYDPD 1425 (2240)
Q Consensus 1377 sTs~eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQaA-DtVIifD~p 1425 (2240)
.+ ..++++|+.+..+ +||+ |+++++|||++.+ ++||+||.|
T Consensus 307 ~~-----~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 307 TK-----KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SS-----SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred cH-----HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 97 3788999976554 5666 9999999999996 999999999
No 59
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.83 E-value=1.3e-20 Score=194.96 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=104.3
Q ss_pred CccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHH
Q 000099 1928 SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2007 (2240)
Q Consensus 1928 s~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2007 (2240)
|.++..+.+....++|..|++.|. .+..+++|+.+|+..++||||++ |++||||.+|+.||+.+.|.++++|+
T Consensus 3 s~~k~~~~~~~~~~~c~~il~~l~------~~~~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~ 75 (117)
T 3g0l_A 3 SVKKPKRDDSKDLALCSMILTEME------THEDAWPFLLPVNLKLVPGYKKV-IKKPMDFSTIREKLSSGQYPNLETFA 75 (117)
T ss_dssp TCCCCCCCCTTHHHHHHHHHHHHH------TSTTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHH
T ss_pred CCcCCCcCCHHHHHHHHHHHHHHH------hCCCchhhcCcCChhhcCChHHH-cCCCCCHHHHHHHHhCCCCCCHHHHH
Confidence 344555677777789999999997 45679999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
.||.|||.||+.||+++|++|.+|..|+++|..+|+..|=
T Consensus 76 ~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 76 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998874
No 60
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.82 E-value=3e-20 Score=190.92 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
++.+++.|+.|+++|.. |..+.+|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|.+||+|||.
T Consensus 5 ~~~l~~~~~~il~~l~~------~~~~~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~ 77 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKS------HPSAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHH------SGGGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc------CCCchhhcCCCCcccccCHHHH-ccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 57889999999999974 4689999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||+.||+++|.+|.+|..|+++|..+|+..
T Consensus 78 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 78 NCREYNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999863
No 61
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=196.66 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
.+..+|+.+++|+..+..++|++||.+|++|+++|+|+ |+||. ++||||.+|.+||+++.|.++++|..||.|||
T Consensus 4 v~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~---k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 4 VTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN---KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp CCCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT---SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC---CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999 89997 79999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
+||+.||+++|+||+||..|+++|..++...+.+
T Consensus 79 ~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 79 ERARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998774
No 62
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.81 E-value=4.6e-20 Score=195.29 Aligned_cols=113 Identities=14% Similarity=0.266 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
+.++++|..||..|.... .+++|+.+|+..++||||++ |++||||.+|..||+.+.|.++++|+.||.|||.|
T Consensus 20 ~~l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCE------DSEPFRQPVDLLEYPDYRDI-IDTPMDFATVRETLEAGNYESPMELCKDVRLIFSN 92 (135)
T ss_dssp STHHHHHHHHHHHHHHSG------GGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC------CChhhcCCCChhhCCCHHHH-hCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 567889999999998653 48999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhccccc
Q 000099 2017 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFT 2061 (2240)
Q Consensus 2017 a~~yn~~-~sev~~dA~~L~~~F~~~~k~~fP~~~f~~a~~a~~~~ 2061 (2240)
|+.||++ +|.||.+|..|+++|...|+.+|| +-+.|+.++
T Consensus 93 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~-----~~~~~~r~~ 133 (135)
T 3mb3_A 93 SKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS-----DYKSALRFH 133 (135)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHTCC-
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhc
Confidence 9999998 999999999999999999999977 445555543
No 63
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.81 E-value=3.7e-20 Score=193.21 Aligned_cols=105 Identities=13% Similarity=0.240 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
++.++++|+.||+.|... ..+.+|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.
T Consensus 8 ~~~~~~~c~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 80 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQC------EDSEPFRQPVDLVEYPDYRDI-IDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFS 80 (123)
T ss_dssp --CHHHHHHHHHHHHHTS------GGGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC------CCcHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 467889999999999844 469999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2016 GAMQFYGF-SHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2016 Na~~yn~~-~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
||+.||++ +|.||.+|..|+++|..+++..+|
T Consensus 81 Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 113 (123)
T 3q2e_A 81 NAKAYTPNKRSKIYSMTLRLSALFEEKMKKISS 113 (123)
T ss_dssp HHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 999999999999999999999987
No 64
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.80 E-value=9.7e-20 Score=191.18 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=101.7
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcc--cccCCCccccccCCccChHHHHhhhccCCCCCHHHHH
Q 000099 1930 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2007 (2240)
Q Consensus 1930 ~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2007 (2240)
....+++..++..|+.||+.|. .|..+++|+.+++ +.++||||++ |++||||.+|++||+.++|.++++|+
T Consensus 13 ~~~~r~~~~l~~~~~~il~~L~------~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~ 85 (127)
T 2oss_A 13 NKPKRQTNQLQYLLRVVLKTLW------KHQFAWPFQQPVDAVKLNLPDYYKI-IKTPMDMGTIKKRLENNYYWNAQECI 85 (127)
T ss_dssp TSCCCCCHHHHHHHHTHHHHHH------TSTTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHHHH------hCccchhhcCCCChhhccCccHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 3456889999999999999997 3678999999976 6699999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
+||.|||+||+.||+++|.+|.+|..|+++|..+|+..-
T Consensus 86 ~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 86 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999997653
No 65
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=187.10 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
..+++.|+.|+++|.+ +..+.+|..++++.++||||++ |++||||.+|..||++++|.++.+|.+||+|||+|
T Consensus 7 ~~l~~~l~~il~~L~~------~~~~~~F~~PVd~~~~pdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQR------KDPSAFFSFPVTDFIAPGYSMI-IKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTN 79 (117)
T ss_dssp HHHHHHHHHHHHHHHT------SSGGGTSSSCCCTTTSSSHHHH-CSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------CcccHHhcCCCCccccCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3567899999999974 3567899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDT 2049 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~ 2049 (2240)
|+.||+++|.+|.+|..|++.|..+++.+.=++
T Consensus 80 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 112 (117)
T 2i7k_A 80 AMIYNKPETIYYKAAKKLLHSGMKILSQERLEH 112 (117)
T ss_dssp HHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887654
No 66
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.79 E-value=8e-18 Score=219.02 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=104.2
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|..++..+...+..|||||......+.|...|...|+++..|+|.....+|..+...|+. +. +||+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCC
Confidence 4568888888888777788999999999999999999999999999999999887777655555543 23 799999
Q ss_pred cccccCCCC--------CCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1406 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1406 AGGeGLNLQ--------aADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
.+|+|+|+. +..+||+||.|-++..|.|++||++|.|.+.....|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~ 541 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 541 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEE
Confidence 999999999 788999999999999999999999999988776544
No 67
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=188.73 Aligned_cols=103 Identities=11% Similarity=0.159 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
.-++..|+.||.+|..+ ..+.+|+.+|+..++||||++ |++||||.+|..||++++|.++++|..||+|||.|
T Consensus 6 ~pl~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEK------DTGNIFSEPVPLSEVPDYLDH-IKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSN 78 (121)
T ss_dssp CHHHHHHHHHHHHHHHH------CSSCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC------CccHhhCCcCCccccCCHHHH-cCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34677999999999854 468999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
|+.||+++|.+|.+|..|+++|..+|+.+.
T Consensus 79 a~~yN~~~s~~~~~A~~L~~~~~~~l~~~~ 108 (121)
T 2d9e_A 79 CLKYNAKDTIFYRAAVRLREQGGAVLRQAR 108 (121)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887653
No 68
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.79 E-value=1.4e-19 Score=188.52 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
+.|..||++|. +|..+.+|+.+|++.++||||++ |++||||.+|..||+.++|.++.+|..||.|||.||+.|
T Consensus 16 ~~~~~il~~l~------~~~~a~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 16 AAIQNILTELQ------NHAAAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp HHHHHHHHHHH------HSTTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------cCCCchhhCCCCChhhCcCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47999999997 36789999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
|+++|.+|.+|..|+++|..+++..
T Consensus 89 N~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 89 NGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999864
No 69
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.78 E-value=1.4e-19 Score=187.91 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=98.2
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhccccc--CCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHH
Q 000099 1934 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIE--TSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQ 2011 (2240)
Q Consensus 1934 kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~--~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~Dvq 2011 (2240)
++++.++ +|..||.+|. ...++.+++.|+.+++... +||||++ |++||||.+|..||+.+.|.++++|+.||.
T Consensus 6 ~~~~~l~-~c~~il~~l~---~~~~~~~a~~F~~pvd~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~ 80 (120)
T 3jvl_A 6 KISEQLK-CCSGILKEMF---AKKHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLESREYRDAQEFGADVR 80 (120)
T ss_dssp SSCHHHH-HHHHHHHHHT---SGGGHHHHGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHH---hCcCccccchhcCCCCchhcCCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHH
Confidence 4555554 9999999995 4446678999999999888 9999999 999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2012 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2012 LMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
|||.||+.||+++|.||.+|..|+++|..+++..-
T Consensus 81 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 81 LMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999987653
No 70
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.78 E-value=1.7e-19 Score=189.97 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=96.9
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhccc--ccCCCccccccCCccChHHHHhhhccCCCCCHHHHH
Q 000099 1930 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKR--IETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2007 (2240)
Q Consensus 1930 ~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R--~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2007 (2240)
....++++.++ +|.+||..|.... .+.++++|+.++.. .++||||++ |++||||.+|..||+.+.|.++.+|.
T Consensus 15 ~k~~~~~~~l~-~c~~il~~L~~~~---~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 89 (130)
T 2ouo_A 15 EKSSKVSEQLK-CCSGILKEMFAKK---HAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLEAREYRDAQEFG 89 (130)
T ss_dssp ----CHHHHHH-HHHHHHHHHTSGG---GHHHHGGGSSCCCTTSTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CCCcccHHHHH-HHHHHHHHHHhCC---cchhHHHhcCCCChhhccCCcHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 34457777775 8999999997543 34588999999654 569999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
.||.|||.||+.||+++|.||.+|..|+++|..+|+..
T Consensus 90 ~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 90 ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999864
No 71
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.78 E-value=2.7e-19 Score=193.54 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=101.6
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHhhhccCCCCCHHHHHH
Q 000099 1931 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2008 (2240)
Q Consensus 1931 ~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2008 (2240)
...+++..++..|+.||+.|.. +..+++|+.++... ++||||++ |++||||.+|..||+.+.|.++.+|+.
T Consensus 25 ~~~r~t~~l~~~~~~il~~l~~------~~~a~~F~~PVd~~~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~ 97 (154)
T 4alg_A 25 KPGRVTNQLQYLHKVVMKALWK------HQFAWPFRQPVDAVKLGLPDYHKI-IKQPMDMGTIKRRLENNYYWAASECMQ 97 (154)
T ss_dssp -CCCCBHHHHHHHHTHHHHHHT------STTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHh------CcCchhhcCCCChhhccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHH
Confidence 3458999999999999999974 47899999998866 89999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2009 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2009 DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
||.|||.||+.||+++|.||.+|..|+++|..+|+..-+
T Consensus 98 Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~ 136 (154)
T 4alg_A 98 DFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQ 136 (154)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCc
Confidence 999999999999999999999999999999999987544
No 72
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.78 E-value=4.5e-19 Score=219.80 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=87.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEc
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIif 1422 (2240)
.+.++||||+....++.|.+.|...|+.+..+||.+. .++++.|+++... +|++|+++++|||++. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 3568999999999999999999999999999999764 5789999976555 7999999999999999 999999
Q ss_pred C--------------------CCCChhhHHHHhhhhhccCC-cceE
Q 000099 1423 D--------------------PDPNPKNEEQAVARAHRIGQ-KREV 1447 (2240)
Q Consensus 1423 D--------------------~pWNP~~d~QAiGRAhRIGQ-KKeV 1447 (2240)
| .|.++..|+|++||++|.|. ...+
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~ 304 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 304 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccE
Confidence 9 89999999999999999997 4444
No 73
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.78 E-value=3.4e-19 Score=184.02 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
..++|..||..|... ..+++|+.+++..++||||++ |++||||.+|+.||+.+.|.++++|+.||.|||.||+
T Consensus 17 ~~~~~~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 89 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAH------KDSWPFLEPVDESYAPNYYQI-IKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCR 89 (116)
T ss_dssp HHHHHHHHHHHHHHS------TTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC------CCcHhhcCcCChhhccChHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 345899999999754 447899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+++|++|.+|..|+++|...|.+
T Consensus 90 ~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 90 KYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
No 74
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.77 E-value=1.9e-18 Score=213.25 Aligned_cols=97 Identities=20% Similarity=0.117 Sum_probs=85.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCe----
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT---- 1418 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADt---- 1418 (2240)
.+.++||||.....++.+.+.|...++.+..+||. +|.++++.|+++..+ +|++|+++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 36689999999999999999999999999999997 578899999986655 799999999999999 555
Q ss_pred -------------EEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1419 -------------VIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1419 -------------VIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
||++|.+.+...|.|++||++|.|....+
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 57889999999999999999999965433
No 75
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.77 E-value=6.1e-19 Score=198.82 Aligned_cols=114 Identities=21% Similarity=0.322 Sum_probs=105.4
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhcc---CCCCCHHHHH
Q 000099 1931 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELV 2007 (2240)
Q Consensus 1931 ~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~---~eY~~v~ef~ 2007 (2240)
....|++..+++|+.||..|.. |.++..|+.++. .++||||++ |++||||.+|.+||+. +.|.++.+|+
T Consensus 74 ~~~~ls~~~~~~c~~il~~l~~------~~~s~~F~~Pv~-~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~~Y~s~~~f~ 145 (207)
T 3u5n_A 74 TAQGLSPVDQRKCERLLLYLYC------HELSIEFQEPVP-ASIPNYYKI-IKKPMDLSTVKKKLQKKHSQHYQIPDDFV 145 (207)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHT------STTCGGGSSCCC-TTSTTHHHH-CSSCCCHHHHHHHHSTTSTTCCSSHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHh------ccchhhhhccCC-hhhccHhHH-hCCccCHHHHHHHHhcccCCCcCCHHHHH
Confidence 3457999999999999999973 568899999655 489999999 9999999999999997 7999999999
Q ss_pred HHHHHHHHhhhhhcC-----------------CCcHHHHHHHHHHHHHHHHHHHhCCCChhH
Q 000099 2008 SDVQFMLKGAMQFYG-----------------FSHEVRSEARKVHDLFFDLLKIAFPDTDFR 2052 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~-----------------~~sev~~dA~~L~~~F~~~~k~~fP~~~f~ 2052 (2240)
.||.|||.||+.||+ ++|+|+++|..|+.+|..+|+..|||.+|.
T Consensus 146 ~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~~f~ 207 (207)
T 3u5n_A 146 ADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDRTFA 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999 999999999999999999999999999983
No 76
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.77 E-value=1.1e-17 Score=217.33 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=109.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|..++..+...+..|||||......+.|...|...|+++..|+|.....+|..+...|+.+ . ++|+|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIAT 496 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIAT 496 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEec
Confidence 345688899888888777889999999999999999999999999999999998877777677777743 3 89999
Q ss_pred ccccccCCCCCC-------------------------------------CeEEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1405 RAAGRGLNLQSA-------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1405 rAGGeGLNLQaA-------------------------------------DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
+.+|+|+|+... .+||+||.|-++..|.|++||++|.|.+...
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999863 5999999999999999999999999988766
Q ss_pred EEEEEehhHHHhh
Q 000099 1448 KVIYMEAVVDKIS 1460 (2240)
Q Consensus 1448 ~VyrLvTVEEkI~ 1460 (2240)
..| ++.++.+.
T Consensus 577 ~~f--ls~eD~l~ 587 (853)
T 2fsf_A 577 RFY--LSMEDALM 587 (853)
T ss_dssp EEE--EETTSGGG
T ss_pred EEE--ecccHHHH
Confidence 544 34444433
No 77
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.76 E-value=2.5e-18 Score=212.75 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=81.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi- 1421 (2240)
.+.++||||.....++.+.+.|...++.+..+|| ++|.++++.|+++... +|++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 4688999999976655 799999999999999 999986
Q ss_pred ------------------cCCCCChhhHHHHhhhhhccC-CcceEEEE
Q 000099 1422 ------------------YDPDPNPKNEEQAVARAHRIG-QKREVKVI 1450 (2240)
Q Consensus 1422 ------------------fD~pWNP~~d~QAiGRAhRIG-QKKeV~Vy 1450 (2240)
||.|.++..|.|++||++|.| .+..+.++
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 899999999999999999984 55555544
No 78
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=187.44 Aligned_cols=106 Identities=14% Similarity=0.237 Sum_probs=98.6
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1934 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1934 kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
++.+ ++..|+.||++|.. |..+++|+.+++..++||||++ |++||||.+|..||+.+.|.++++|+.||.||
T Consensus 10 ~~~~-l~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 81 (135)
T 3rcw_A 10 RLTP-LTVLLRSVLDQLQD------KDPARIFAQPVSLKEVPDYLDH-IKHPMDFATMRKRLEAQGYKNLHEFEEDFDLI 81 (135)
T ss_dssp CCCH-HHHHHHHHHHHHHH------TCTTCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred cchH-HHHHHHHHHHHHHh------CCcchhhcCCCChhhcCCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4444 77799999999975 5678999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
|.||+.||+++|.+|.+|..|+++|..+++.+.-
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 82 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998744
No 79
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.76 E-value=1.1e-18 Score=181.07 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
++.+.+.|..+|.+|.+ .+..+..|..++... ++||||++ |++||||.+|..||+.+.|.++++|+.||.||
T Consensus 9 ~~el~~~l~~~l~~l~~-----~~~~s~~F~~pv~~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 82 (119)
T 3p1f_A 9 PEELRQALMPTLEALYR-----QDPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLM 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHT-----CTTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----hCCCCchhcCCCCchhccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 46788899999999864 356889999998766 89999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
|+||+.||+++|.+|.+|..|+++|...++..|.
T Consensus 83 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 83 FNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 80
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.76 E-value=8.9e-19 Score=182.92 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++..|..|+..|.. +..+.+|..+++..++||||++ |++||||.+|..||+.++|.++++|+.||.|||.||+
T Consensus 14 ~~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (123)
T 3hme_A 14 IQQLLEHFLRQLQR------KDPHGFFAFPVTDAIAPGYSMI-IKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAM 86 (123)
T ss_dssp HHHHHHHHHHHHHT------TCTTCSSSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------CCccHhhcCCCChhhccCHHHH-CCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 56699999999974 4457799999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+++|.+|.+|..|++.|...|..
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 87 TYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 81
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.76 E-value=4.7e-17 Score=211.71 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=106.7
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|...+..+...+..|||||......+.|...|...|+++..|+|.....++..+...|+.+ . ++|+|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 34688888888888777889999999999999999999999999999999998766666566666642 3 799999
Q ss_pred cccccCCCCCC----------------------------------------------------CeEEEcCCCCChhhHHH
Q 000099 1406 AAGRGLNLQSA----------------------------------------------------DTVIIYDPDPNPKNEEQ 1433 (2240)
Q Consensus 1406 AGGeGLNLQaA----------------------------------------------------DtVIifD~pWNP~~d~Q 1433 (2240)
.+|+|+|+... .+||+||.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999964 49999999999999999
Q ss_pred HhhhhhccCCcceEEEEEEehhHHHh
Q 000099 1434 AVARAHRIGQKREVKVIYMEAVVDKI 1459 (2240)
Q Consensus 1434 AiGRAhRIGQKKeV~VyrLvTVEEkI 1459 (2240)
++||++|.|.......| ++.++.+
T Consensus 597 r~GRTGRqGdpG~s~ff--lSleD~l 620 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRFY--LSLGDEL 620 (922)
T ss_dssp HHHTSSGGGCCEEEEEE--EETTSHH
T ss_pred HhcccccCCCCeeEEEE--echhHHH
Confidence 99999999988766544 3444443
No 82
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.75 E-value=1.8e-18 Score=189.19 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=95.7
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHH
Q 000099 1931 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2008 (2240)
Q Consensus 1931 ~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2008 (2240)
.+..+...+.+.|+.||.+|.. +..+.+|..+ |++.++||||++ |++||||.+|..||+.+.|.++.+|+.
T Consensus 14 ~~~p~~~~~~~~~~~il~~L~~------~~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~ 86 (166)
T 3fkm_X 14 LYFQGNKQWYLLANQLILSLSK------YEGGHIFEKLVDAKKQNCPDYYDV-IKNPMSFSCIKTKLKKGQYAYPSEFVK 86 (166)
T ss_dssp ---CTTHHHHHHHHHHHHHHTT------STTGGGGSSCCC-----CCCGGGC-CSSCCCHHHHHHHHHHTCCCSHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHh------CCCChhhcCCCChhhccCCCHHHh-cCCCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 3457788999999999999973 5678899999 557799999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2009 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2009 DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
||.|||.||+.||+++|.||.+|..|+++|..+|+.+-
T Consensus 87 Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 87 DVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999998854
No 83
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.75 E-value=1.7e-18 Score=200.97 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=124.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~P--s 1075 (2240)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..++. . ..+++|||||+ .|+.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~-~-~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLE-N-YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHH-H-CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHH-c-CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999887 357899999999999999888877665 2 23589999997 588999999999964 3
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEE
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RL 1154 (2240)
..+..+.++..... ......+|+|+||+.+.+....+ ..+|++|||||||++.+. .+...+..+ ...++|
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEE
Confidence 45555555433211 12356799999999997764322 247899999999999853 555566666 578899
Q ss_pred EeecCCCCCCHHHHHHHHhhhcc
Q 000099 1155 LLTGTPLQNDLKELWSLLNLLLP 1177 (2240)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP 1177 (2240)
+|||||.. ...+++.++.++.|
T Consensus 257 ~lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 257 GLSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp EECSSCCT-TSTTHHHHHHHHCE
T ss_pred EEeCCCCC-cchHHHHHHHhcCC
Confidence 99999964 45788888887765
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.75 E-value=1.8e-18 Score=191.73 Aligned_cols=107 Identities=21% Similarity=0.382 Sum_probs=100.0
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhcc--CCCCCHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 2010 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~--~eY~~v~ef~~Dv 2010 (2240)
..|++..+++|+.||.+|... ..+.+|+.++. .++||||++ |++||||.+|++||+. +.|.++++|+.||
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~------~~s~~F~~Pv~-~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv 147 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCH------EMSLAFQDPVP-LTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 147 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHS------TTCHHHHSCCC-TTSTTHHHH-CSSCCCHHHHHHHHHSTTCSCCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhc------hhhhhhccccc-cCCCchhhh-cCCCCCHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 478999999999999999854 46889998655 579999999 9999999999999998 7999999999999
Q ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2011 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2011 qLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
.|||.||+.||+++|+||.+|..|+++|..+|+.+||
T Consensus 148 ~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 148 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998
No 85
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.75 E-value=2.1e-18 Score=214.31 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=85.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi- 1421 (2240)
.+.++||||.....++.|.+.|...|+.+..++|. +|..+++.|+.+..+ +||+|+++++|||++. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 36799999999999999999999999999999995 678899999876555 7999999999999999 99998
Q ss_pred -------------------cCCCCChhhHHHHhhhhhccCC-cceEEEE
Q 000099 1422 -------------------YDPDPNPKNEEQAVARAHRIGQ-KREVKVI 1450 (2240)
Q Consensus 1422 -------------------fD~pWNP~~d~QAiGRAhRIGQ-KKeV~Vy 1450 (2240)
||.|.++..|+|++||++|.|. ...+.+|
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~ 309 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHY 309 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 8899999999999999999996 4445444
No 86
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.74 E-value=1.9e-18 Score=189.58 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=100.0
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
..|++...+.|+.||..|. .|.++.+|+.+++..++||||++ |++||||.+|.+||+++.|.++++|+.||+|
T Consensus 67 ~~l~~~~~~~l~~il~~l~------~~~~~~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~l 139 (174)
T 2ri7_A 67 TPLTEKDYEGLKRVLRSLQ------AHKMAWPFLEPVDPNDAPDYYGV-IKEPMDLATMEERVQRRYYEKLTEFVADMTK 139 (174)
T ss_dssp SBCCHHHHHHHHHHHHHHH------TSGGGTTTSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCBHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH------hhhhhhhhhcCCCcccCCchHHH-hCCcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3678888889999999997 46789999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||.||+.||+++|.+|++|..|+++|.++|+.+
T Consensus 140 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 140 IFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998754
No 87
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.74 E-value=1.1e-17 Score=216.80 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=89.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi- 1421 (2240)
.+.++||||.....++.+.+.|...++.+..+||. +|.++++.|+++..+ +||+|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 57899999999999999999999999999999993 799999999976555 799999999999999 999997
Q ss_pred -------------------cCCCCChhhHHHHhhhhhcc-CCcceEEEE
Q 000099 1422 -------------------YDPDPNPKNEEQAVARAHRI-GQKREVKVI 1450 (2240)
Q Consensus 1422 -------------------fD~pWNP~~d~QAiGRAhRI-GQKKeV~Vy 1450 (2240)
||.|.++..|.|++||++|. |++..+.+|
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 67888999999999999999 555555544
No 88
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.73 E-value=8.9e-18 Score=176.91 Aligned_cols=109 Identities=18% Similarity=0.271 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1938 ~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
.+...|+.+++.|. .+..+++|+.+|+..++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.||
T Consensus 10 ~l~~~l~~il~~l~------~~~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 82 (130)
T 3dai_A 10 ELRIFLRNVTHRLA------IDKRFRVFTKPVDPDEVPDYVTV-IKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNA 82 (130)
T ss_dssp HHHHHHHHHHHHHH------TSGGGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------cCCccHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 45566888888886 55679999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHH----HHHHHHHHHHHHHHHHHhCCCChhHHh
Q 000099 2018 MQFYGFSHEV----RSEARKVHDLFFDLLKIAFPDTDFREA 2054 (2240)
Q Consensus 2018 ~~yn~~~sev----~~dA~~L~~~F~~~~k~~fP~~~f~~a 2054 (2240)
+.||+++|++ |.+|+.|++.|..+++..+.. +|...
T Consensus 83 ~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~-~~~~~ 122 (130)
T 3dai_A 83 LEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE-DFEQL 122 (130)
T ss_dssp HHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHH
T ss_pred HHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 9999999877 899999999999999877654 66543
No 89
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.73 E-value=7.6e-18 Score=182.91 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
|.+. +..|..+|..+...+ -.++..+++|+.+|++..+||||++ |++||||.+|..||+.+.|.++.+|+.||.|||
T Consensus 23 ~~d~-~~~l~~iL~~i~~~k-l~~~~~s~~F~~PVd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 99 (158)
T 3uv4_A 23 MDDD-QVAFSFILDNIVTQK-MMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 99 (158)
T ss_dssp CSHH-HHHHHHHHHHHHHHT-TTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCch-HHHHHHHHHHHHHHH-HHcCCCchhhcCcCChhhcccHHHH-cCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4444 557888888875432 3468899999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
.||+.||+++|.||.+|..|+++|.+.|+.+-
T Consensus 100 ~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 100 ANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998864
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.73 E-value=5.9e-18 Score=188.58 Aligned_cols=110 Identities=26% Similarity=0.292 Sum_probs=102.2
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccC--CccChHHHHhhhccC---CCCCHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGN--NILDLRKIDQRVDRL---EYNGVMELV 2007 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~--~PiDL~~I~qri~~~---eY~~v~ef~ 2007 (2240)
.+|++..+++|..||.+|.. |..+++|+++++ |+||.+ |+ +||||.||..||+.+ .|.++++|+
T Consensus 71 ~~m~~~~~~~c~~iL~~l~~------~~~s~pF~~pV~----~~Yy~i-Ik~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~ 139 (189)
T 2ro1_A 71 AKLSPANQRKCERVLLALFC------HEPCRPLHQLAT----DSTFSL-DQPGGTLDLTLIRARLQEKLSPPYSSPQEFA 139 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHH------STTHHHHHSCSC----CTTCSS-SCSSCCCCHHHHHHHHHTSSSSCCSCHHHHH
T ss_pred cCCCHHHHHHHHHHHhhccc------CccchhhcCCCC----hhhhcc-ccCCCcccHHHHHHHHhcCCCcccCCHHHHH
Confidence 47899999999999999974 568999999986 899999 98 899999999999999 999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCChhHHh
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREA 2054 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~~f~~a 2054 (2240)
+||+|||+||+.|| +++.+|.+|..|+++|..+|+.+||+..|..+
T Consensus 140 ~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~~~~~ 185 (189)
T 2ro1_A 140 QDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDTKFSAV 185 (189)
T ss_dssp HHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 99999999999999 58999999999999999999999999888643
No 91
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.73 E-value=3.3e-17 Score=210.78 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=85.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE---
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV--- 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV--- 1419 (2240)
.+.++||||+....++.|.+.|...++.+..+||. +|.++++.|+++..+ +|++|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 46799999999999999999999999999999984 788899999986655 799999999999996 8988
Q ss_pred -----------------EEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1420 -----------------IIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1420 -----------------IifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
|+||.|-++..|+||+||++|.|..
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~ 467 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 467 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCC
Confidence 7777788999999999999999863
No 92
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=176.60 Aligned_cols=109 Identities=16% Similarity=0.280 Sum_probs=96.5
Q ss_pred CCccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHH
Q 000099 1927 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 2006 (2240)
Q Consensus 1927 gs~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef 2006 (2240)
||+..-.++...+...|..|+++|.. +..+.+|+.+ +||||+| |++||||.+|..||+.++|.++.+|
T Consensus 1 ~~~~~e~~~~~~L~~~~~~il~~l~~------~~~~~~F~~P-----~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~~f 68 (131)
T 2dkw_A 1 GSSGSSGNTLRELRLFLRDVTKRLAT------DKRFNIFSKP-----VSDYLEV-IKEPMDLSTVITKIDKHNYLTAKDF 68 (131)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHHHH------SGGGCTTSSC-----CSSCTTS-CSSCCCHHHHHHHHHTTCCCSSHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHh------CccchhhcCc-----CccHHhH-cCCCcCHHHHHHHHcCCCCCCHHHH
Confidence 34444456678888899999999974 3467899985 9999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCcH----HHHHHHHHHHHHHHHHHHhCC
Q 000099 2007 VSDVQFMLKGAMQFYGFSHE----VRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2007 ~~DvqLMf~Na~~yn~~~se----v~~dA~~L~~~F~~~~k~~fP 2047 (2240)
..||.|||.||+.||+++|+ +|.+|+.|++.|..+|+..+.
T Consensus 69 ~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 69 LKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 589999999999999976665
No 93
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.72 E-value=4.6e-17 Score=175.07 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=111.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|..+|... .+.++||||++...++.|.+.|...|+.+..+||+++..+|..+++.|+++... +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 3467999999988763 577999999999999999999999999999999999999999999999976544 78999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++++|||++.+++||+||+|||+..|+|++||++|.|++..+.+|.
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999887765554
No 94
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.71 E-value=4.1e-17 Score=177.52 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=110.8
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|..+|... .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 457999999988864 567999999999999999999999999999999999999999999999976554 789999
Q ss_pred cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
++++|||++.+++||+||+|||+..|+|++||++|.|++..+.++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999987766554
No 95
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.70 E-value=1.3e-16 Score=209.88 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=91.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh-----------cCceEEeecCCCCHHHHHHHHHHHhcC--CCCccEEEEecccccc
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQW-----------RQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGR 1409 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~-----------rGiky~rLDGsTs~eEReeaIk~FNs~--Ds~~fVfLLSTrAGGe 1409 (2240)
.+.++||||.....++.+.+.|.. .++.+..+||+++.++|..+++.|... .....-+||+|+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999998875 588899999999999999999999711 0123447999999999
Q ss_pred cCCCCCCCeEEEcCC------------------CCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1410 GLNLQSADTVIIYDP------------------DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1410 GLNLQaADtVIifD~------------------pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|||++++++||.++. |.+...+.||.||++|. ++-.+|+|++
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~ 441 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYT 441 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSC
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEec
Confidence 999999999999777 88999999999999998 2334556654
No 96
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.70 E-value=2.2e-15 Score=211.38 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-C--C
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-P--S 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-P--s 1075 (2240)
.+.|.|.+++.-+ |+.+.|.+++.+||+|||+++...|...+. ....+.+|+|+|.. |+.+-..+|.+.+ + +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~-~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLL-QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHH-hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 5778999998654 456788999999999999998777766554 33456899999976 5555556665433 2 5
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCCchhHHH-HHhhcc--
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKDRESVLA-RDLDRY-- 1148 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN~~SKls-kaLk~L-- 1148 (2240)
+++..+.|......+. ....+|+|+|++.+........ -.+..+|||||+|.+.......+ ..+..+
T Consensus 1002 ~~V~~ltGd~~~~~~~------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKL------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRY 1075 (1724)
T ss_dssp CCEEECCSCHHHHHHH------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchhh------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHH
Confidence 6788888875443222 2357999999998743211111 12568999999999975332222 222221
Q ss_pred ------ccceEEEeecC
Q 000099 1149 ------RCQRRLLLTGT 1159 (2240)
Q Consensus 1149 ------ks~~RLLLTGT 1159 (2240)
...+.++||||
T Consensus 1076 i~~~~~~~~riI~lSAT 1092 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSS 1092 (1724)
T ss_dssp HHHTTSSCCEEEEEESC
T ss_pred HHhhcCCCceEEEEeCC
Confidence 23467899999
No 97
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=179.02 Aligned_cols=123 Identities=25% Similarity=0.349 Sum_probs=97.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
..+.|+..|..+|... ..+.++||||++...++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 4567999999988863 2578999999999999999999999999999999999999999999999976555 78999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++++|||++.+++||+||+|||+..|+||+||++|.|++..|.+++
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 150 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 150 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999877665543
No 98
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=1.1e-16 Score=182.72 Aligned_cols=141 Identities=28% Similarity=0.314 Sum_probs=110.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl 1076 (2240)
..+|++||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||. .++.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~~ 158 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (237)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--CC
Confidence 46899999999987664 4569999999999999998877643 4689999998 6789999999994 45
Q ss_pred e-EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEE
Q 000099 1077 S-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155 (2240)
Q Consensus 1077 k-Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLL 1155 (2240)
. +.++.|... ...+|+|+||+.+......+. ..|++|||||||++.+.. ....+..+...++|+
T Consensus 159 ~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~ 223 (237)
T 2fz4_A 159 EYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLG 223 (237)
T ss_dssp GGEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCCSEEEE
T ss_pred CeEEEEeCCCC------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccCCEEEE
Confidence 6 777777543 246899999999987766543 469999999999997653 334455667889999
Q ss_pred eecCCCCCCH
Q 000099 1156 LTGTPLQNDL 1165 (2240)
Q Consensus 1156 LTGTPLQNnL 1165 (2240)
|||||.+++-
T Consensus 224 LSATp~r~D~ 233 (237)
T 2fz4_A 224 LTATFEREDG 233 (237)
T ss_dssp EEESCC----
T ss_pred EecCCCCCCC
Confidence 9999987764
No 99
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.68 E-value=1.8e-16 Score=204.33 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=82.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEE--
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI-- 1420 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVI-- 1420 (2240)
.+.++||||+.+..++.|.+.|...|+.+..+||+++.++ |..... -+|++|+++++|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEec
Confidence 4679999999999999999999999999999999999764 333222 5899999999999996 99988
Q ss_pred --------EcC-----------CCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1421 --------IYD-----------PDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1421 --------ifD-----------~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|| .|.++..|+||+||++| |.+.. |.|++
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt 512 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVT 512 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEe
Confidence 677 78899999999999999 76554 45543
No 100
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.68 E-value=1.5e-16 Score=171.29 Aligned_cols=119 Identities=21% Similarity=0.307 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000099 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1329 KLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG 1408 (2240)
|+..|..++... .+.++||||+....++.|..+|...|+.+..+||+++..+|..+++.|+.+... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 899999988864 578999999999999999999999999999999999999999999999976554 788999999
Q ss_pred ccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1409 eGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+|||++.+++||+||+|||+..|.|++||++|.|+...|.++..
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 135 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 135 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999998887765543
No 101
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=176.87 Aligned_cols=120 Identities=26% Similarity=0.330 Sum_probs=105.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|..+|.. .+.++||||++...++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 45687777776653 567999999999999999999999999999999999999999999999976554 789999
Q ss_pred cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
++++|||++.+++||+||+|||+..|+||+||++|.|++..+.++.
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEE
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999988765543
No 102
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.68 E-value=4e-16 Score=202.38 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=94.3
Q ss_pred eEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCC-
Q 000099 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP- 1424 (2240)
Q Consensus 1346 KVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~- 1424 (2240)
..||||.....++.+...|...++.+..+||+++.++|..+++.|+.+++.+. +|++|+++++|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34888999999999999999999999999999999999999999997444433 69999999999999 9999999999
Q ss_pred -------------CCChhhHHHHhhhhhccCCc-ceEEEEEEeh
Q 000099 1425 -------------DPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1454 (2240)
Q Consensus 1425 -------------pWNP~~d~QAiGRAhRIGQK-KeV~VyrLvT 1454 (2240)
|++...+.|+.||++|.|.. ..-.||.+..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 88999999999999999977 3456666644
No 103
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.66 E-value=6.3e-17 Score=192.52 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCC-CHHHHHHHHHHHHH
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLK 2015 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~-~v~ef~~DvqLMf~ 2015 (2240)
+.++..|..+|..+. +.||.+|+.|+.+|+++.+||||+| |++||||.||++|| .+|. ++.+|+.||+|||+
T Consensus 27 p~~~~~~~~~L~~~~----~~~r~~~~~F~~p~~~~~~PdY~~i-Ik~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~ 99 (311)
T 2r0y_A 27 PKFNRFISFTLDVLI----DKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTK 99 (311)
T ss_dssp TTHHHHHHHHHHHHH----HHSHHHHGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HcCCchhHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHH
Confidence 556778888887775 3699999999999999999999999 99999999999999 6676 89999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||+.||+++|.||++|+.|+++|...|...
T Consensus 100 Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 100 NCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988765
No 104
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.65 E-value=9.1e-17 Score=194.74 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCC-CHHHHHHHHHHHHH
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLK 2015 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~-~v~ef~~DvqLMf~ 2015 (2240)
+.+...|..+|..|. +.|+.+++.|+.+|++.++||||+| |++||||.+|++|| .+|. ++.+|+.||.|||+
T Consensus 77 ~~~~~~~~~~l~~l~----~~~~~~~~~F~~p~~~~~~PdY~~i-Ik~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~ 149 (361)
T 2r10_A 77 PKFNRFISFTLDVLI----DKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTK 149 (361)
T ss_dssp TTHHHHHHHHHHHHH----HHTHHHHGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HcCCcccHHhcCCCCcccCCChHhh-cCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHH
Confidence 556778888887774 4689999999999999999999999 99999999999999 5666 79999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||+.||+++|.||.+|..|+++|...|...
T Consensus 150 Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 150 NCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988765
No 105
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=6.3e-16 Score=167.88 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=101.0
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000099 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (2240)
Q Consensus 1328 GKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAG 1407 (2240)
.|+..|..++..+ .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 3788888777653 467999999999999999999999999999999999999999999999976544 78999999
Q ss_pred cccCCCCCCCeEEEcCCC------CChhhHHHHhhhhhccCCcceEEEE
Q 000099 1408 GRGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1408 GeGLNLQaADtVIifD~p------WNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++|||++.+++||+||+| |++..|+||+||++|.|+...+.++
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999 7779999999999999976555333
No 106
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.64 E-value=6.8e-15 Score=206.56 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=100.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--------CCCCeEEEechH-HHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--------NYGPHLIIVPNA-VLVNWKSELH 1070 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--------~~GP~LIVVP~S-LL~QW~~Ef~ 1070 (2240)
+|.+.|.+++..++ +.+.|.+++.+||+|||+++...|...+.... ..+.+|+|+|.. |+.+-.++|.
T Consensus 79 ~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999987654 46788999999999999998777665543221 234689999965 6666777777
Q ss_pred HHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh------hhhccccCcceEecccccccCCchhHH-
Q 000099 1071 KWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKDRESVL- 1141 (2240)
Q Consensus 1071 Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrLKN~~SKl- 1141 (2240)
+.+. +++|..++|......+ .....+|+|||++.+..- ...+ ....+|||||+|.+.+.....
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~------~~~~~~IlVtTpEkld~llr~~~~~~~l--~~v~~vIiDEvH~l~d~RG~~l 227 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE------EISATQIIVCTPEKWDIITRKGGERTYT--QLVRLIILDEIHLLHDDRGPVL 227 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT------TGGGCSEEEECHHHHHHHTTSSTTHHHH--TTEEEEEETTGGGGGSTTHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc------ccCCCCEEEECHHHHHHHHcCCccchhh--cCcCEEEEecchhcCCccHHHH
Confidence 6654 4678888886432211 134679999999986322 1122 246899999999886522111
Q ss_pred ----HHHhh---cc-ccceEEEeecC
Q 000099 1142 ----ARDLD---RY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1142 ----skaLk---~L-ks~~RLLLTGT 1159 (2240)
.+.+. .. ..-++++||||
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 22221 12 23468999999
No 107
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.64 E-value=3.4e-16 Score=182.60 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
..+...|..||++|.. +..+++|+.+|++..+||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.|
T Consensus 13 ~~l~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (265)
T 3uv5_A 13 VTLSSILESIINDMRD------LPNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 85 (265)
T ss_dssp HHHHHHHHHHHHHHHT------STTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc------CCCchhhhCCCChhhcCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 3778899999999974 4569999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
|+.||+++|.||.+|..|+++|...++..-+
T Consensus 86 a~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 86 SATYNGPKHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987643
No 108
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.64 E-value=1.3e-15 Score=171.23 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=109.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|..++.. ..+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+..+ +|++|
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEec
Confidence 346799999999874 4578999999999999999999999999999999999999999999999976554 79999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++++|||++.+++||+||+||++..|.||+||++|.|+...+.+++
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999887665544
No 109
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.63 E-value=2.6e-15 Score=164.78 Aligned_cols=154 Identities=21% Similarity=0.175 Sum_probs=114.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~---kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Ps 1075 (2240)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+.. ......+|||||. .++.||.+++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 799999999998876 6789999999999999877666554321 1234679999998 5789999999999988
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s 1150 (2240)
+.+..++|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+. .
T Consensus 99 ~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQK---EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp SCEEEECSSSCSHHHH---HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEECCCChHHHH---HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 8888888765433221 1223468999999999876432 334457899999999998543 334444444554 4
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
...+++|||+
T Consensus 176 ~~~i~~SAT~ 185 (207)
T 2gxq_A 176 RQTLLFSATL 185 (207)
T ss_dssp SEEEEECSSC
T ss_pred CeEEEEEEec
Confidence 5689999997
No 110
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.63 E-value=1.6e-14 Score=184.94 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=102.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|...+..+...+.+|||||.....++.|...|...|+++..|+|.....+|.-+...|.. +. ++|+|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVAT 529 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIAT 529 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEc
Confidence 34568888888888877789999999999999999999999999999999998544444444445543 33 79999
Q ss_pred ccccccCCCC--------CCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+.+|+|+|+. +..+||+||.|-++..|.|++||++|.|.+.....|
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~f 583 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFF 583 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEE
Confidence 9999999998 567999999999999999999999999988876544
No 111
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=167.73 Aligned_cols=131 Identities=20% Similarity=0.260 Sum_probs=94.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHH-HHHHHHHHC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVN-WKSELHKWL 1073 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~S-LL~Q-W~~Ef~Kw~ 1073 (2240)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++... ...+++|||||.. ++.| |.+++.+|.
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4899999999998875 67899999999999999998887765432 2356899999985 6688 999999987
Q ss_pred C-CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--------ccccCcceEecccccccCC
Q 000099 1074 P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1074 P-slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--------L~kikWd~VIIDEAHrLKN 1136 (2240)
. .+.+..+.|........ .......+|+|+||+.+...... +....|++|||||||++..
T Consensus 108 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCH---HHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhH---HhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 6 47777777765433211 11123589999999999765433 3345789999999999964
No 112
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.62 E-value=3.3e-15 Score=166.31 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=114.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~---Ps 1075 (2240)
.|+|||.+++..++. +.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.+|. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998886 67899999999999999887776655322333489999997 57889999999986 46
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc-h--hHHHHHhhccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR-E--SVLARDLDRYR- 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~-~--SKlskaLk~Lk- 1149 (2240)
+++.+++|+....... ........+|+|+|++.+.... ..+....+++|||||||++... . ..+...+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHH--HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 8888888875443222 1233456799999999987543 2233457899999999999642 1 22333333443
Q ss_pred cceEEEeecCCCC
Q 000099 1150 CQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1150 s~~RLLLTGTPLQ 1162 (2240)
..++++|||||-.
T Consensus 190 ~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 190 EKQVMMFSATLSK 202 (220)
T ss_dssp SSEEEEEESCCCT
T ss_pred cCeEEEEEeecCH
Confidence 4568999999843
No 113
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.61 E-value=1.1e-13 Score=179.61 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
.+++..|...|......+.+|||||.....++.|.++|...|+.+..+||+++..+|.++++.|+.+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 3566666666777777899999999999999999999999999999999999999999999999975544 7999999
Q ss_pred ccccCCCCCCCeEEEcCC-----CCChhhHHHHhhhhhccC
Q 000099 1407 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1407 GGeGLNLQaADtVIifD~-----pWNP~~d~QAiGRAhRIG 1442 (2240)
+++|||++.+++||++|. ++++..|+|++||++|.|
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999998 899999999999999986
No 114
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.40 E-value=4.9e-17 Score=176.03 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=108.6
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
..|+..|..++.. ..+.++||||++...++.|.++|...|+.+..+||+++..+|..+++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 4588888888775 3467999999999999999999999999999999999999999999999975544 7899999
Q ss_pred ccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1407 GGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++|||++.+++||+||+|||+..|+|++||++|.|++..|.++.
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999988775554
No 115
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.60 E-value=6.2e-15 Score=164.47 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=115.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC----
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P---- 1074 (2240)
+++|||.+++.+++. +.++|++.+||+|||++++..+...+........+|||||+. ++.||.+++.+++.
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 699999999998886 678999999999999987776665543333456899999975 77899999998865
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhcc
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~L 1148 (2240)
.+.+..+.|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred ccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 46777777765443221 1113467999999999876432 233446899999999998643 23444555555
Q ss_pred c-cceEEEeecCCCCCCHHHH
Q 000099 1149 R-CQRRLLLTGTPLQNDLKEL 1168 (2240)
Q Consensus 1149 k-s~~RLLLTGTPLQNnL~EL 1168 (2240)
. ...+++||||+ .+.+.++
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHHH
T ss_pred CcccEEEEEecCC-CHHHHHH
Confidence 4 45689999997 4444443
No 116
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.60 E-value=1.2e-14 Score=159.57 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=113.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P---s 1075 (2240)
+|+|||.+++..++. +.+.|+..+||+|||++++..+...+.......++|||||.. ++.||..++.+++. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998875 678999999999999988766655443333445799999975 77899999998864 6
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhccc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk-s 1150 (2240)
+.+..+.|........ .......+|+|+|++.+..... .+...++++|||||||++.... ..+...+..+. .
T Consensus 101 ~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 101 AKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCccHHHHH---HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 7788888776544332 1224578999999999865432 2333478999999999986532 23334444444 4
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
..+++||||+
T Consensus 178 ~~~l~~SAT~ 187 (206)
T 1vec_A 178 RQILLYSATF 187 (206)
T ss_dssp CEEEEEESCC
T ss_pred ceEEEEEeeC
Confidence 5789999998
No 117
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.59 E-value=6.5e-16 Score=182.53 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
..++..|..||++|. .+..+.+|+.++++..+||||++ |++||||.||..||+.+.|.++.+|..||.|||+|
T Consensus 46 ~~l~~~~~~il~~l~------~~~~a~~F~~pV~~~~~pdY~~i-Ik~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~N 118 (292)
T 3aad_A 46 VTLSSILESIINDMR------DLPNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 118 (292)
T ss_dssp HHHHHHHHHHHHHHS------SSTTCGGGSSSCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------hCCcchhhcCCCCchhcccHHHH-cCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHH
Confidence 345778999999996 35789999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
|+.||+++|.+|.+|..|+++|..+++..
T Consensus 119 a~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 119 SATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999888764
No 118
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.58 E-value=1.3e-14 Score=163.52 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=112.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~---Ps 1075 (2240)
.|+|||.+++..++. +.+.|++.+||+|||++++..+...+.......++|||||+ .|+.||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998775 67899999999999998766555443323445689999997 57899999999986 36
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc---hhHHHHHhhccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR- 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~Lk- 1149 (2240)
+++.++.|+....... ......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..+.
T Consensus 122 ~~~~~~~g~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDK----TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp CCEEEECTTSCHHHHH----HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred ceEEEEeCCCCHHHHH----HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 7888888865443221 12346899999999987643 2333457889999999999543 333444455554
Q ss_pred cceEEEeecCC
Q 000099 1150 CQRRLLLTGTP 1160 (2240)
Q Consensus 1150 s~~RLLLTGTP 1160 (2240)
..++++||||+
T Consensus 198 ~~~~l~lSAT~ 208 (230)
T 2oxc_A 198 SKQMLAVSATY 208 (230)
T ss_dssp SCEEEEEESCC
T ss_pred CCeEEEEEecc
Confidence 45689999996
No 119
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=162.42 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=113.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEech-HHHHHHHHHHHHHCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIVPN-AVLVNWKSELHKWLP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k----g~~GP~LIVVP~-SLL~QW~~Ef~Kw~P 1074 (2240)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+... .....+|||||+ .++.||..++.+++.
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 799999999998875 67899999999999999877666544321 234579999997 578899999999986
Q ss_pred C--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCCc--hhHHHHHhhc
Q 000099 1075 S--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (2240)
Q Consensus 1075 s--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~ 1147 (2240)
. +.+..++|+....... ......+|+|+|++.+..... .+...+|++|||||||++.+. ...+...+..
T Consensus 123 ~~~~~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEA----ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TSSCCEEEECCC--CHHHH----HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCeeEEEEECCCCHHHHH----HhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 4 6777788765543222 122578999999999976532 234457899999999998653 3445555556
Q ss_pred cc-cceEEEeecCC
Q 000099 1148 YR-CQRRLLLTGTP 1160 (2240)
Q Consensus 1148 Lk-s~~RLLLTGTP 1160 (2240)
+. ...+++||||+
T Consensus 199 ~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 199 LPKKRQTLLFSATQ 212 (236)
T ss_dssp SCTTSEEEEEESSC
T ss_pred CCCCCeEEEEEeeC
Confidence 64 44589999997
No 120
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=164.83 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=115.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
..|++||.+++..++. +.+.|++.+||+|||++++..+...+........+|||||+. ++.||.++|.+++. +
T Consensus 64 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 3799999999998875 678999999999999998777766555455556799999975 77899999999865 5
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCCc--hhHHHHHhhccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR- 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk- 1149 (2240)
+.+.++.|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+.
T Consensus 140 ~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~ 216 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQS---LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 216 (249)
T ss_dssp CCEEEECTTSCHHHHH---HHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS
T ss_pred eeEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC
Confidence 6777777765443322 1224578999999999976532 233446899999999998653 333445555554
Q ss_pred cceEEEeecCC
Q 000099 1150 CQRRLLLTGTP 1160 (2240)
Q Consensus 1150 s~~RLLLTGTP 1160 (2240)
...+++||||+
T Consensus 217 ~~~~l~~SAT~ 227 (249)
T 3ber_A 217 DRKTFLFSATM 227 (249)
T ss_dssp SSEEEEEESSC
T ss_pred CCeEEEEeccC
Confidence 45689999997
No 121
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.55 E-value=1.6e-14 Score=171.31 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=106.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|.+++.... +.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+..+ +|++|
T Consensus 11 ~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT 85 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVAT 85 (300)
T ss_dssp CSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEe
Confidence 34679999999987643 88999999999999999999999999999999999999999999999986655 79999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++++|||++.+++||+||+||++..|+|++||++|.|+...+.+++
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999887665554
No 122
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.55 E-value=3e-14 Score=158.74 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=107.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+........+|||||.. ++.||.+++.+++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 799999999998875 678999999999999986555544443334456899999975 77899999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-cc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s~ 1151 (2240)
.+..+.|+....... ......+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+. ..
T Consensus 112 ~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 112 KVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCcchHHHH----hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 777777765433221 112348999999999875432 233346899999999998542 233444444443 44
Q ss_pred eEEEeecCC
Q 000099 1152 RRLLLTGTP 1160 (2240)
Q Consensus 1152 ~RLLLTGTP 1160 (2240)
++++||||+
T Consensus 188 ~~i~lSAT~ 196 (224)
T 1qde_A 188 QVVLLSATM 196 (224)
T ss_dssp EEEEEESSC
T ss_pred eEEEEEeec
Confidence 689999997
No 123
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.55 E-value=4.1e-14 Score=161.20 Aligned_cols=155 Identities=22% Similarity=0.263 Sum_probs=112.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---------CCCCeEEEechH-HHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---------NYGPHLIIVPNA-VLVNWKSE 1068 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---------~~GP~LIVVP~S-LL~QW~~E 1068 (2240)
..|+|||.+++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..+
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 3799999999998876 678999999999999998877766553221 235799999975 78999999
Q ss_pred HHHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHH
Q 000099 1069 LHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLA 1142 (2240)
Q Consensus 1069 f~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKls 1142 (2240)
+.+|.. .+.+..+.|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+.
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 196 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIR 196 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHH
Confidence 999875 36677777765443322 1223568999999999976532 233346789999999998643 33444
Q ss_pred HHhhcc--c---cceEEEeecCC
Q 000099 1143 RDLDRY--R---CQRRLLLTGTP 1160 (2240)
Q Consensus 1143 kaLk~L--k---s~~RLLLTGTP 1160 (2240)
..+..+ . ...+++|||||
T Consensus 197 ~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 197 KIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHhhccCCCCCCcEEEEEEEeC
Confidence 455432 2 34589999997
No 124
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.54 E-value=3.2e-14 Score=161.20 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|++||.+++..++. +.++|++.+||+|||++++..+...+........+|||||+. ++.||..++.+++. .+
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 678999999999999987776665543333456899999975 78899999999975 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCC--chhHHHHHhhccc-cc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lk-s~ 1151 (2240)
.+..+.|+....... .......++|+|+|++.+.... ..+....+++|||||||++.+ ....+...+..+. ..
T Consensus 128 ~~~~~~g~~~~~~~~--~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 128 TCHACIGGTNVRNEM--QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEECCCchHHHH--HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 666666665433221 1223345899999999987643 223344689999999999843 3344555555554 34
Q ss_pred eEEEeecCC
Q 000099 1152 RRLLLTGTP 1160 (2240)
Q Consensus 1152 ~RLLLTGTP 1160 (2240)
..++||||+
T Consensus 206 ~~i~~SAT~ 214 (237)
T 3bor_A 206 QVVLLSATM 214 (237)
T ss_dssp EEEEECSSC
T ss_pred eEEEEEEec
Confidence 679999997
No 125
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.54 E-value=2.1e-12 Score=167.65 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=101.8
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
.+++..|...|......+.+|||||.....++.|.++|...|+.+..+||.++..+|.++++.|+.+... +|++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 3566666666666667889999999999999999999999999999999999999999999999975544 7999999
Q ss_pred ccccCCCCCCCeEEEcCC-----CCChhhHHHHhhhhhcc
Q 000099 1407 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1407 GGeGLNLQaADtVIifD~-----pWNP~~d~QAiGRAhRI 1441 (2240)
+++|||++.+++||++|. ++++..|+|++||++|.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC
Confidence 999999999999999998 89999999999999997
No 126
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.49 E-value=3.1e-13 Score=151.39 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~------kg~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
+++|||.+++..++. +.+.|+..+||+|||+.++..+...+.. ......+|||||+. |+.||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 799999999988875 7789999999999999887766554321 12445789999976 778999999998
Q ss_pred C-CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhc
Q 000099 1073 L-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (2240)
Q Consensus 1073 ~-PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~ 1147 (2240)
. .++.+..++|+....... ......++|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 5 467777777765433221 122356899999999987643 2233346899999999998643 2344444555
Q ss_pred cc-cceEEEeecCC
Q 000099 1148 YR-CQRRLLLTGTP 1160 (2240)
Q Consensus 1148 Lk-s~~RLLLTGTP 1160 (2240)
+. ....+++|||.
T Consensus 195 ~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 195 VRPDRQTVMTSATW 208 (228)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCcCCeEEEEEeeC
Confidence 54 34679999995
No 127
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.47 E-value=4.1e-13 Score=152.00 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=107.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps-- 1075 (2240)
.++|||.+++..++. +.+.|+..+||+|||++++..+...+... .....+|||||+. |+.||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 699999999988775 67899999999999999877665554322 2334699999976 788999999999764
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh----hccccCcceEecccccccCCc-----hhHHHHHhh
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDR-----ESVLARDLD 1146 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrLKN~-----~SKlskaLk 1146 (2240)
+.+..+.|........ .......++|+|+|++.+..... .+...++++|||||||++... ...+...+.
T Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKF--GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCEECCCHHHHHHTTT--STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred ceEEEEecCccHHHHh--hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 5555555543322111 11224567999999999976532 233446899999999998542 223333333
Q ss_pred cc--ccceEEEeecCC
Q 000099 1147 RY--RCQRRLLLTGTP 1160 (2240)
Q Consensus 1147 ~L--ks~~RLLLTGTP 1160 (2240)
.+ ...+.++||||+
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 33 234689999997
No 128
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.44 E-value=1.4e-12 Score=148.13 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=111.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----g~~GP~LIVVP~S-LL~QW~~Ef~Kw~ 1073 (2240)
.++|||.+++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||+. |+.||.+++.+++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 699999999988876 67899999999999999877766555422 2345789999976 6788998888875
Q ss_pred C--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhc
Q 000099 1074 P--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (2240)
Q Consensus 1074 P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~ 1147 (2240)
. ++.+..++|+....... .......+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQI---RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred hhcCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 3 56777777765443222 1223468999999999876432 233347889999999998643 3334444555
Q ss_pred cc-cceEEEeecCC
Q 000099 1148 YR-CQRRLLLTGTP 1160 (2240)
Q Consensus 1148 Lk-s~~RLLLTGTP 1160 (2240)
+. ....+++|||.
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 53 44689999996
No 129
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.44 E-value=9.1e-13 Score=152.14 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=111.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
.|+|+|.+++..++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 699999999988876 577899999999999998777766554321 345799999975 77899999999975
Q ss_pred C--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCc--hhHHHHHhhc
Q 000099 1075 S--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (2240)
Q Consensus 1075 s--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~--~SKlskaLk~ 1147 (2240)
. +.+..+.|........ .......+|+|+|++.+...... +...++++|||||||++... ...+...+..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEA---QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TCCSCEEEECSSSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hcCceEEEEECCCCHHHHH---HHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 3 5666666655433222 11234589999999998764322 33346899999999998643 3334444455
Q ss_pred cc-cceEEEeecCC
Q 000099 1148 YR-CQRRLLLTGTP 1160 (2240)
Q Consensus 1148 Lk-s~~RLLLTGTP 1160 (2240)
+. ....++||||+
T Consensus 229 ~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 229 LPTRRQTMLFSATQ 242 (262)
T ss_dssp SCSSSEEEEECSSC
T ss_pred CCCCCeEEEEEecC
Confidence 54 35689999997
No 130
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.31 E-value=4.3e-11 Score=152.03 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=68.4
Q ss_pred HHHHHHHHHH-HhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000099 1331 WILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1409 (2240)
Q Consensus 1331 elLdrIL~kL-~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGe 1409 (2240)
..+...|..+ .....++|||+.....++.+.+.|.. +. +.+.|.. .+|.++++.|+.+ .. ..|.+.+....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~-il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KY-LVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CC-EEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-Ce-EEEEEecCceec
Confidence 3344444444 34567999999999999999888864 33 3445554 4688999999863 22 122348899999
Q ss_pred cCCCCC----CCeEEEcCCCC-Ch-----------------------------hhHHHHhhhhhccCCcceEEE
Q 000099 1410 GLNLQS----ADTVIIYDPDP-NP-----------------------------KNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1410 GLNLQa----ADtVIifD~pW-NP-----------------------------~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
|||+++ +.+||+++.|+ +| ....|++||+-|--...-|.+
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp ---------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred ceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEE
Confidence 999997 89999999996 33 234599999999765555543
No 131
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=146.57 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=107.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---P 1074 (2240)
..++++|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||+. |..|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3799999999987764 12378899999999999987765555443333444799999977 6678877777765 5
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCC---chhHHHHHhhcc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD---RESVLARDLDRY 1148 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN---~~SKlskaLk~L 1148 (2240)
.+.+.++.|....... .....+|+|+|++.+..... .+...++.+|||||||++.+ ....+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~~------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERG------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp TCCEEEESTTCCCCTT------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred CcEEEEEeCCccHhhh------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 6777777775543211 13567999999999976542 33334788999999999864 122233333344
Q ss_pred c-cceEEEeecCC
Q 000099 1149 R-CQRRLLLTGTP 1160 (2240)
Q Consensus 1149 k-s~~RLLLTGTP 1160 (2240)
. ....+++|||+
T Consensus 265 ~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 265 PRNCQMLLFSATF 277 (300)
T ss_dssp CTTCEEEEEESCC
T ss_pred CCCCEEEEEeccC
Confidence 3 34589999997
No 132
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.30 E-value=1.5e-10 Score=151.13 Aligned_cols=148 Identities=22% Similarity=0.235 Sum_probs=95.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
|...+|-|..|+--++. +. |....||+|||++++..+. +.... ...++||||+..|. .|...|.+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~-L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVA-LNALT--GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHH-HHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHH-HHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34677889999877664 33 8889999999998755543 22212 23689999998653 3777777766
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHH----Hhh-----hhcccc---CcceEecccccccCCchhHH
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM----YDR-----SKLSKV---DWKYIIIDEAQRMKDRESVL 1141 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~----kD~-----s~L~ki---kWd~VIIDEAHrLKN~~SKl 1141 (2240)
++++.++.|+.....+. .....+|++.|.+.|- ++. ..+... .+.++||||+|.|.-
T Consensus 148 -GLsv~~i~Gg~~~~~r~-----~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi----- 216 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERR-----KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI----- 216 (997)
T ss_dssp -TCCEEECCTTCCHHHHH-----HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT-----
T ss_pred -CCeEEEEeCCCCHHHHH-----HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH-----
Confidence 57777766654322111 1235799999998883 221 122333 678999999998742
Q ss_pred HHHhhccccceEEEeecCCCCCCHHHHHHHHh
Q 000099 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (2240)
Q Consensus 1142 skaLk~Lks~~RLLLTGTPLQNnL~ELwSLLn 1173 (2240)
.. ...-|++|| |+... ..+|..++
T Consensus 217 ----De--artPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 217 ----DE--ARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp ----SS--TTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred ----hC--CCCCeeeeC-CCccc-hHHHHHHH
Confidence 11 122389999 87766 44544443
No 133
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.28 E-value=8.7e-12 Score=138.31 Aligned_cols=103 Identities=21% Similarity=0.384 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
|+..+++.++.||..|. .+.....|+. | . ++.||||.+|++||+.++|.++.+|++||.|||
T Consensus 72 ~~~el~~~l~~vl~~L~------~~~~s~~~~~---------y-~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf 133 (183)
T 3lqh_A 72 LEKELQISLKQVLTALL------NSRTTSHLLR---------Y-R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKII 133 (183)
T ss_dssp HHHHHHHHHHHHHHHHH------TCHHHHHHHT---------C-C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hccccHhhhh---------h-h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 56788888999999887 4556777766 3 3 499999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCChhHHhh
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREAR 2055 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~~f~~a~ 2055 (2240)
.||..||++.+++.+.+..|+.+|...|+.+||..++.+-|
T Consensus 134 ~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~~~~ 174 (183)
T 3lqh_A 134 QAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSR 174 (183)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGGGCT
T ss_pred HHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCCCccccc
Confidence 99999999999999999999999999999999988876654
No 134
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.93 E-value=3.9e-08 Score=127.17 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--Psl 1076 (2240)
++||+|.+.+.-+.....++.++|+..+||+|||+.++..+...+... ..+++|++|+. +..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999987777777788999999999999999887665554333 35889999976 6788999988764 256
Q ss_pred eEEEEec
Q 000099 1077 SCIYYVG 1083 (2240)
Q Consensus 1077 kVvvy~G 1083 (2240)
+++++.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6665554
No 135
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.77 E-value=2.4e-08 Score=113.38 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechHHH-HHHHHHHHHHCCC-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVL-VNWKSELHKWLPS- 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~SLL-~QW~~Ef~Kw~Ps- 1075 (2240)
.+++||.+++..+.. +...++..++|+|||.+...++.......+. ...+|+++|...+ .+....+...+..
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 588999999998876 7778999999999997766655543332332 2367888998754 5566666665532
Q ss_pred C-eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEeccccccc-CCchhH--HHHHh-hcccc
Q 000099 1076 V-SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM-KDRESV--LARDL-DRYRC 1150 (2240)
Q Consensus 1076 l-kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrL-KN~~SK--lskaL-k~Lks 1150 (2240)
+ ..+.|.- .... .......+|+|+|++.+.+.... .-.++++|||||||++ .+.... ..+.+ .....
T Consensus 137 ~~~~~g~~~-~~~~------~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~ 208 (235)
T 3llm_A 137 PGKSCGYSV-RFES------ILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE 208 (235)
T ss_dssp TTSSEEEEE-TTEE------ECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred cCceEEEee-chhh------ccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC
Confidence 1 1111111 1000 01124578999999988766432 2346899999999984 222211 22222 23344
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
...+++|||+
T Consensus 209 ~~~il~SAT~ 218 (235)
T 3llm_A 209 VRIVLMSATI 218 (235)
T ss_dssp SEEEEEECSS
T ss_pred CeEEEEecCC
Confidence 5689999996
No 136
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.70 E-value=4.3e-08 Score=124.88 Aligned_cols=132 Identities=21% Similarity=0.225 Sum_probs=94.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
.++||||.+.+..+...+..+.++|+...||+|||+.++..+.. ...++||++|+. +..||.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 37999999999877777777888999999999999988766654 245899999976 77889999988743 5
Q ss_pred CeEEEEecchhh--------------------------------HhHHHH----------------HHHhhcCCcEEEEc
Q 000099 1076 VSCIYYVGAKDQ--------------------------------RSRLFS----------------QEVAALKFNVLVTT 1107 (2240)
Q Consensus 1076 lkVvvy~Gskde--------------------------------Rk~l~~----------------qei~~~~fdVVITT 1107 (2240)
++++++.|.... ...++. ........+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 677777664321 001110 01123467999999
Q ss_pred HHHHHHhh--hhcc-ccCcceEecccccccCC
Q 000099 1108 YEFIMYDR--SKLS-KVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1108 YE~L~kD~--s~L~-kikWd~VIIDEAHrLKN 1136 (2240)
|.++..+. ..+. .....+|||||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998763 2221 13567899999999976
No 137
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=98.66 E-value=8.6e-10 Score=118.08 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=78.2
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
+.+.+ +++.|+.++ +.+||+++++| .|||++ |+||. ++||+|.. |..+|+.|.|.++.++..|+.+
T Consensus 10 ~~l~~-l~~~v~~~~-----De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~-Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 10 ELIHN-LFVSVMSHQ-----DDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDI-IRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp HHHHH-HHHHHHTCB-----CTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHH-HHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhc-----CCCCCcchHHHhHCCCCC--ccccC--CCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44556 888999999 78999999999 999998 89998 99999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQPKIKRKRS 1808 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~~~~~rkr~ 1808 (2240)
+||||| +|+.+||-.+.++|.
T Consensus 79 ~NAr~yN~e~S~Iy-----eDAv~Lq~~f~~~r~ 107 (147)
T 3iu6_A 79 ERARRMNRTDSEIY-----EDAVELQQFFIKIRD 107 (147)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHH-----HHHHHHHHHHHHHHH
Confidence 999999 999999955555543
No 138
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=98.64 E-value=8.2e-10 Score=114.95 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=79.7
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
..++. +.+.++... +.+||+++.+| .+|++..||+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 11 ~~~~~-ll~~l~~~~-----d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 11 EILEQ-LLEAIVVAT-----NPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKT-IAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHH-HHHHHHHCB-----CTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcc-----CcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHH
Confidence 44555 677777777 66899999999 99999999999999999999999 9999999999999999999988
Q ss_pred --------CCCccccCCccccccccc-cccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQ-PKIKRKRSIR 1810 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~-~~~~rkr~~~ 1810 (2240)
+||+++ .++..|+ .+.++-.++.
T Consensus 84 ~Na~~yN~~~s~~~-----~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 84 KNAKTYNEPGSQVF-----KDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHHHHHHHHHHhh
Confidence 999999 8888777 5555444443
No 139
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=98.55 E-value=5.1e-09 Score=109.79 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=71.5
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.+.... +++|+.++.+| .+|++..+||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 17 i~~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 90 (126)
T 3mqm_A 17 ICDGIISYK-----DSSRQALAAPLLNLPPKKKNADYYEKISDPLDLIT-IEKQILTGYYKTVEAFDADMLKVFRNAEKY 90 (126)
T ss_dssp HHHHHHHCB-----CTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556677766 66899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 91 N~~~s~~~-----~~A~~L~ 105 (126)
T 3mqm_A 91 YGRKSPVG-----RDVCRLR 105 (126)
T ss_dssp HCTTSHHH-----HHHHHHH
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 999999 8887776
No 140
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=98.54 E-value=3.8e-09 Score=110.55 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=73.5
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
..+.. +.+.+.... +.+|+.++.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 18 ~~~~~-il~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 18 QKLNE-VYEAVKNYT-----DKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEK-IRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp HHHHH-HHHHHHHCB-----CTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhHh-----cccCCcccHHhhcCCCccccCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444 566677766 56899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 91 ~Na~~yN~~~s~i~-----~~A~~L~ 111 (124)
T 3mb4_A 91 NNACTYNEPESLIY-----KDALVLH 111 (124)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8887776
No 141
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=4.5e-09 Score=109.93 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=74.9
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
..++. +.+.++... +.+||.++.+| .+|++..|||||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 16 ~~~~~-il~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 16 KQMNA-IIDTVINYK-----DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp HHHHH-HHHHHHHCB-----CSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHH-HHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhh-----cccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 44555 667777776 56899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --------CCCccccCCcccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQP 1801 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~~ 1801 (2240)
++|+++ .++..|+-
T Consensus 89 ~Na~~yN~~~s~i~-----~~A~~L~~ 110 (123)
T 2dat_A 89 HNAQTFNLEGSQIY-----EDSIVLQS 110 (123)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHH
Confidence 999999 88877773
No 142
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=98.51 E-value=6.7e-09 Score=109.71 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=73.6
Q ss_pred cccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000099 1707 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1782 (2240)
Q Consensus 1707 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1782 (2240)
.+.. +.+.+.+.. +..|+.++.+| .+|++..||+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 21 ~~~~-l~~~l~~~~-----d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 21 QSMQ-LYDTVRSCR-----NNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQ-IRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHH-HHHHHHTCB-----CSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHh-----cccCCCccHhhcCCCChhhCccHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3445 666777777 67899999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc
Q 000099 1783 -------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 -------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ +++..|+
T Consensus 94 Na~~yN~~~s~i~-----~~A~~L~ 113 (130)
T 3k2j_A 94 NAKRYNVPNSAIY-----KRVLKLQ 113 (130)
T ss_dssp HHHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8877776
No 143
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=98.49 E-value=8.2e-09 Score=106.79 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=72.0
Q ss_pred ccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000099 1708 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1782 (2240)
Q Consensus 1708 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1782 (2240)
+.. +.+.+.... +.+||.++.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 10 c~~-il~~l~~~~-----d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 10 CHE-LYNTIRDYK-----DEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMK-IQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp HHH-HHHHHHHCB-----CTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhh-----ccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 344 556677666 56899999999 99999999999999999999999 9999999999999999999988
Q ss_pred ------CCCccccCCccccccccc
Q 000099 1783 ------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 ------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 83 a~~yN~~~s~~~-----~~A~~L~ 101 (116)
T 3iu5_A 83 AKSYYKPDSPEY-----KAACKLW 101 (116)
T ss_dssp HHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHCCCCCHHH-----HHHHHHH
Confidence 999999 7777666
No 144
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=98.46 E-value=8.6e-09 Score=111.09 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=79.1
Q ss_pred ccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000099 1708 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1782 (2240)
Q Consensus 1708 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1782 (2240)
++. +++.+++.. ++.+||.++++| .+|++..|||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 29 ~k~-ll~~l~~~~----~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 29 MKI-LFNVVLEAR----EPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKI-IEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHH-HHHHHHHCB----CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHH----hcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 444 667777766 245799999999 99999999999999999999999 9999999999999999999998
Q ss_pred ------CCCccccCCccccccccc-cccccccccccc
Q 000099 1783 ------SGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVR 1812 (2240)
Q Consensus 1783 ------~~Sw~~~~~~~~d~~~~~-~~~~rkr~~~~r 1812 (2240)
++|+++ .++..|+ -+.++-.++...
T Consensus 103 a~~yN~~~s~i~-----~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 103 ARHYNEEGSQVY-----NDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHHSCTTSHHH-----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHCCCCCHHH-----HHHHHHHHHHHHHHHHccCC
Confidence 999999 9998888 444444444444
No 145
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=98.35 E-value=3.3e-08 Score=104.27 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=74.0
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
..+.. ++++++... ++.+||.++.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 14 ~~~~~-il~~l~~~~----d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 14 KKMKK-IVDAVIKYK----DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHH-HHHHHHHCB----CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcc----cccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34445 566677665 234899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --------CCCccccCCccccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQPK 1802 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~~~ 1802 (2240)
+||+++ .++..|+-.
T Consensus 88 ~Na~~yN~~~s~i~-----~~A~~L~~~ 110 (129)
T 2grc_A 88 QNAQTFNLEGSLIY-----EDSIVLQSV 110 (129)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHHH
Confidence 999999 888777733
No 146
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=98.04 E-value=3.5e-07 Score=94.09 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=59.5
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
+..+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 22 ~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-----~~A~~ 95 (112)
T 3d7c_A 22 HPSAWPFMEPVKKSEAPDYYEVIRFPIDLKT-MTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC-----RCASA 95 (112)
T ss_dssp SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhcCCCCcccccCHHHHccCCcCHHH-HHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3478899 99999999999999999999999 9999999999999999999999 899998 77766
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 96 L~ 97 (112)
T 3d7c_A 96 LE 97 (112)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 147
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=97.98 E-value=6.2e-07 Score=93.19 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=57.9
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ +||+++ +.+..|
T Consensus 24 ~~~~~F~~PVd~~~~pdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~-----~~A~~L 97 (117)
T 2i7k_A 24 DPSAFFSFPVTDFIAPGYSMIIKHPMDFST-MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYY-----KAAKKL 97 (117)
T ss_dssp SGGGTSSSCCCTTTSSSHHHHCSCCCCHHH-HHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHH-----HHHHHH
T ss_pred cccHHhcCCCCccccCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 346788 77888899999999999999999 9999999999999999999999 999998 777666
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 98 ~ 98 (117)
T 2i7k_A 98 L 98 (117)
T ss_dssp H
T ss_pred H
Confidence 5
No 148
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=97.98 E-value=5.4e-07 Score=94.06 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=59.9
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
+..+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 28 ~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~ 101 (121)
T 1e6i_A 28 HAAAWPFLQPVNKEEVPDYYDFIKEPMDLST-MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYY-----KYANR 101 (121)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhCCCCChhhCcCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 4578899 99999999999999999999999 9999999999999999999999 899998 77766
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 102 L~ 103 (121)
T 1e6i_A 102 LE 103 (121)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 149
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=5e-07 Score=94.33 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=58.3
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ .++..|+
T Consensus 24 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 97 (121)
T 2d9e_A 24 TGNIFSEPVPLSEVPDYLDHIKKPMDFFT-MKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFY-----RAAVRLR 97 (121)
T ss_dssp SSCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhCCcCCccccCCHHHHcCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 56889 99999999999999999999999 9999999999999999999999 899999 7776665
No 150
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=97.96 E-value=6.6e-07 Score=92.70 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=58.6
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+..|
T Consensus 29 ~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L 102 (117)
T 3g0l_A 29 EDAWPFLLPVNLKLVPGYKKVIKKPMDFST-IREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIG-----RAGHNM 102 (117)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHH-----HHHHHH
T ss_pred CCchhhcCcCChhhcCChHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 467899 99999999999999999999999 9999999999999999999988 899988 776665
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 103 ~ 103 (117)
T 3g0l_A 103 R 103 (117)
T ss_dssp H
T ss_pred H
Confidence 5
No 151
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=97.92 E-value=7.7e-07 Score=92.04 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=57.5
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|+...+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +.+..|+
T Consensus 33 ~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 106 (116)
T 3nxb_A 33 DSWPFLEPVDESYAPNYYQIIKAPMDISS-MEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYT-----KMSDNLE 106 (116)
T ss_dssp TCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHHH
T ss_pred CcHhhcCcCChhhccChHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 36789 99999999999999999999999 9999999999999999999998 899988 6666555
No 152
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=97.90 E-value=9.6e-07 Score=96.26 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=67.4
Q ss_pred cccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000099 1707 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1782 (2240)
Q Consensus 1707 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1782 (2240)
.+.. .+..++... -..+..+.+| .+|+...||+||.+|++||||++ |..+|+.|.|.++.++..|+.+
T Consensus 29 ~l~~-iL~~i~~~k------l~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~ 100 (158)
T 3uv4_A 29 AFSF-ILDNIVTQK------MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILA 100 (158)
T ss_dssp HHHH-HHHHHHHHT------TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH------HHcCCCchhhcCcCChhhcccHHHHcCCccCHHH-HHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3444 444466553 2456678899 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc
Q 000099 1783 -------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 -------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ +++..|.
T Consensus 101 Na~~yN~~~s~i~-----~~A~~L~ 120 (158)
T 3uv4_A 101 NSVKYNGPESQYT-----KTAQEIV 120 (158)
T ss_dssp HHHHHHCTTCHHH-----HHHHHHH
T ss_pred HHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 7776554
No 153
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=97.90 E-value=9.4e-07 Score=93.75 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=58.0
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1799 (2240)
.+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.++.++..|+.+ + ||+|+ +++..|
T Consensus 38 ~s~~F~~pv~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 111 (135)
T 3mb3_A 38 DSEPFRQPVDLLEYPDYRDIIDTPMDFAT-VRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIY-----SMSLRL 111 (135)
T ss_dssp GGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHH-----HHHHHH
T ss_pred CChhhcCCCChhhCCCHHHHhCCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 37899 99999999999999999999999 9999999999999999999998 6 89999 777666
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 112 ~ 112 (135)
T 3mb3_A 112 S 112 (135)
T ss_dssp H
T ss_pred H
Confidence 5
No 154
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=97.88 E-value=1e-06 Score=92.21 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=57.4
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|+...+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +++..|.
T Consensus 30 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 103 (123)
T 3hme_A 30 PHGFFAFPVTDAIAPGYSMIIKHPMDFGT-MKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYY-----KLAKKIL 103 (123)
T ss_dssp TTCSSSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhcCCCChhhccCHHHHCCCCCCHHH-HHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 45689 88899999999999999999999 9999999999999999999988 999998 7776555
No 155
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=97.87 E-value=1.2e-06 Score=91.64 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=57.9
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1799 (2240)
.+.+| .+|+...|||||.+|++||||++ |..+|+.|.|.++.++..|+.+ + +|+++ .++..|
T Consensus 27 ~s~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 100 (123)
T 3q2e_A 27 DSEPFRQPVDLVEYPDYRDIIDTPMDFGT-VRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIY-----SMTLRL 100 (123)
T ss_dssp GGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHH-----HHHHHH
T ss_pred CcHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 47899 99999999999999999999999 9999999999999999999998 5 89998 777666
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 101 ~ 101 (123)
T 3q2e_A 101 S 101 (123)
T ss_dssp H
T ss_pred H
Confidence 6
No 156
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=97.85 E-value=1.3e-06 Score=92.00 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=58.1
Q ss_pred ccccccc-CCCCc--ccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000099 1730 RRLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1730 r~l~~~f-~lps~--~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
+..+.+| ..++. ..+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ +||+++ ..+
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~A 109 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT-IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV-----LMA 109 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 4578899 77774 589999999999999999 9999999999999999999999 899999 777
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 110 ~~L~ 113 (127)
T 2oss_A 110 EALE 113 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 157
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=97.83 E-value=1.4e-06 Score=92.40 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
+..+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +++..
T Consensus 28 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 101 (135)
T 3rcw_A 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFAT-MRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFY-----RAAVR 101 (135)
T ss_dssp TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCcchhhcCCCChhhcCCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3457889 99999999999999999999999 9999999999999999999998 999999 77766
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 102 L~ 103 (135)
T 3rcw_A 102 LR 103 (135)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 158
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=97.79 E-value=1.1e-06 Score=91.31 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCccccccc-CCCCccc--ccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000099 1728 NSRRLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1794 (2240)
Q Consensus 1728 ~~r~l~~~f-~lps~~~--~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1794 (2240)
+.+.++.+| .+|+... |||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ .
T Consensus 25 ~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~ 98 (120)
T 3jvl_A 25 KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----A 98 (120)
T ss_dssp GGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----H
T ss_pred cCccccchhcCCCCchhcCCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----H
Confidence 344567889 8889888 9999999999999999 9999999999999999999988 899999 7
Q ss_pred cccccc
Q 000099 1795 DEQVLQ 1800 (2240)
Q Consensus 1795 d~~~~~ 1800 (2240)
.+..|+
T Consensus 99 ~A~~L~ 104 (120)
T 3jvl_A 99 MARKLQ 104 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
No 159
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=97.78 E-value=2.8e-06 Score=89.73 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=49.1
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
+..+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 25 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~l 77 (130)
T 3dai_A 25 DKRFRVFTKPVDPDEVPDYVTVIKQPMDLSS-VISKIDLHKYLTVKDYLRDIDL 77 (130)
T ss_dssp SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 3457899 99999999999999999999999 9999999999999999999998
No 160
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=97.78 E-value=1.6e-06 Score=91.59 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=56.8
Q ss_pred cccccc-CCCCccc--ccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000099 1731 RLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~--~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1797 (2240)
.++.+| .+|+... +||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+.
T Consensus 41 ~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~-----~~A~ 114 (130)
T 2ouo_A 41 AYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----AMAR 114 (130)
T ss_dssp HHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred hhHHHhcCCCChhhccCCcHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHHH
Confidence 467889 7777654 9999999999999999 9999999999999999999999 899999 7776
Q ss_pred ccc
Q 000099 1798 VLQ 1800 (2240)
Q Consensus 1798 ~~~ 1800 (2240)
.|+
T Consensus 115 ~L~ 117 (130)
T 2ouo_A 115 KLQ 117 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 161
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.76 E-value=1.6e-06 Score=95.31 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=59.9
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
+..+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 87 ~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 160 (174)
T 2ri7_A 87 HKMAWPFLEPVDPNDAPDYYGVIKEPMDLAT-MEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFY-----QCAEV 160 (174)
T ss_dssp SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred hhhhhhhhcCCCcccCCchHHHhCCcCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 5578899 88999999999999999999999 9999999999999999999999 899998 77777
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 161 L~ 162 (174)
T 2ri7_A 161 LE 162 (174)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 162
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=97.76 E-value=1.9e-06 Score=89.56 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=57.7
Q ss_pred ccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000099 1730 RRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1730 r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
+..+.+| .+++.. .+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +.+
T Consensus 27 ~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A 100 (119)
T 3p1f_A 27 DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLST-IKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY-----KFC 100 (119)
T ss_dssp TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CCCCchhcCCCCchhccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 4567889 778877 69999999999999999 9999999999999999999998 899998 766
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 101 ~~L~ 104 (119)
T 3p1f_A 101 SKLA 104 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 163
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=97.74 E-value=2.5e-06 Score=92.68 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=64.5
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ------ 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~------ 1782 (2240)
+...|++.- .....+.+| .+|+.. .|||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 36 ~~~~il~~l-------~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 36 LHKVVMKAL-------WKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGT-IKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp HHHTHHHHH-------HTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 444555554 234678899 888877 59999999999999999 9999999999999999999998
Q ss_pred ----CCCccccCCccccccccc
Q 000099 1783 ----SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 ----~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+|+ .++..|+
T Consensus 108 ~YN~~~s~i~-----~~A~~L~ 124 (154)
T 4alg_A 108 IYNKPTDDIV-----LMAQTLE 124 (154)
T ss_dssp HHSCTTSHHH-----HHHHHHH
T ss_pred HHCCCCCHHH-----HHHHHHH
Confidence 899999 8887777
No 164
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=97.53 E-value=6.3e-06 Score=90.51 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=54.9
Q ss_pred ccccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000099 1730 RRLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1730 r~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
...+.+| .+++ +..||+||.+|++||||++ |..+|+.|.|.++.++..|+.+ ++|+|+ ..+
T Consensus 36 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A 109 (166)
T 3fkm_X 36 YEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSC-IKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVA-----ITG 109 (166)
T ss_dssp STTGGGGSSCCC-----CCCGGGCCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSHHH-----HHH
T ss_pred CCCChhhcCCCChhhccCCCHHHhcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 3456788 7755 4569999999999999999 9999999999999999999998 999999 777
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 110 ~~L~ 113 (166)
T 3fkm_X 110 KNIE 113 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 165
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=97.51 E-value=8.4e-06 Score=86.68 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=57.5
Q ss_pred cccccccCCCCcccccchhhhhcCCCCcccccchhhcc--CccccccccccccCC----------CCCccccCCcccccc
Q 000099 1730 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (2240)
Q Consensus 1730 r~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee--g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1797 (2240)
+..+.+|.-|....+||||.+|++||||.+ |..+|+. |+|.++.++..|+.+ ++|+++ .++.
T Consensus 35 ~~~s~~F~~Pv~~~~pdY~~iIk~PmDL~t-I~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A~ 108 (135)
T 2yyn_A 35 HEMSLAFQDPVPLTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAGI 108 (135)
T ss_dssp SGGGGGGSSCCCTTSTTHHHHCSSCCCHHH-HHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred CccchhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 467889933545589999999999999999 9999998 699999999999999 999999 8887
Q ss_pred cccc
Q 000099 1798 VLQP 1801 (2240)
Q Consensus 1798 ~~~~ 1801 (2240)
.|+-
T Consensus 109 ~L~~ 112 (135)
T 2yyn_A 109 KLEN 112 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7773
No 166
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=2.1e-05 Score=83.42 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=47.6
Q ss_pred ccccccCCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1731 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1731 ~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
..+.+|.-| +||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++
T Consensus 28 ~~~~~F~~P----~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~ 90 (131)
T 2dkw_A 28 KRFNIFSKP----VSDYLEVIKEPMDLST-VITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGD 90 (131)
T ss_dssp GGGCTTSSC----CSSCTTSCSSCCCHHH-HHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTH
T ss_pred ccchhhcCc----CccHHhHcCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhH
Confidence 356788446 9999999999999999 9999999999999999999999 888763
No 167
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.33 E-value=0.0016 Score=84.79 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=53.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHH
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKW 1072 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw 1072 (2240)
...|-+.|.++|..++. ...-.||..+.|+|||.+.+.+|.+++.. ..++||++|+.. +.+....+...
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 34799999999998875 22236899999999999999999988862 358999999764 56666666554
No 168
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.22 E-value=2.8e-05 Score=87.92 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=50.6
Q ss_pred cccccccCCCCcccccchhhhhcCCCCcccccchhhcc---CccccccccccccCC----------CCCccccCCccccc
Q 000099 1730 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1730 r~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee---g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
+..+.+|.-|....||+||.+|++||||++ |..+|+. |+|.++.++..|+.+ ++|+|+ .++
T Consensus 96 ~~~s~~F~~Pv~~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~-----~~A 169 (207)
T 3u5n_A 96 HELSIEFQEPVPASIPNYYKIIKKPMDLST-VKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQ-----VYA 169 (207)
T ss_dssp STTCGGGSSCCCTTSTTHHHHCSSCCCHHH-HHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccchhhhhccCChhhccHhHHhCCccCHHH-HHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchHH-----HHH
Confidence 346788833444589999999999999999 9999997 899999999999999 788888 666
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
.++.
T Consensus 170 ~~l~ 173 (207)
T 3u5n_A 170 DTQE 173 (207)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
No 169
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.21 E-value=2.2e-05 Score=87.27 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=53.8
Q ss_pred cccccCCCCcccccchhhhhcCCCCcccccchhhcc--CccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1732 l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee--g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
.+.+|.-|....+|+||.+|++||||++ |..+|+. |.|.++.++..|+.+ ++|+++ ..+..|
T Consensus 98 ~s~~F~~Pv~~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~-----~~a~~L 171 (184)
T 3o36_A 98 MSLAFQDPVPLTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAGIKL 171 (184)
T ss_dssp TCHHHHSCCCTTSTTHHHHCSSCCCHHH-HHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHHHHH
T ss_pred hhhhhccccccCCCchhhhcCCCCCHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 4678833444679999999999999999 9999998 899999999999998 889888 766665
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 172 ~ 172 (184)
T 3o36_A 172 E 172 (184)
T ss_dssp H
T ss_pred H
Confidence 5
No 170
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.10 E-value=0.0032 Score=78.58 Aligned_cols=140 Identities=13% Similarity=0.065 Sum_probs=81.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
..|-+-|.+++..++.....+. ..+|....|+|||..+.+++.+|.... ...+|+++|+.....-..+.. ...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG--ETGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC--CceEEEecCcHHHHHHHHhhh----ccc
Confidence 3699999999998876554443 678899999999999988888887532 257899999876543222211 011
Q ss_pred EEEEecchhhHhHHHHHHH-hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHh-hccccceEEE
Q 000099 1078 CIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYRCQRRLL 1155 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei-~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaL-k~Lks~~RLL 1155 (2240)
+..++ .++.... .......+... .......+++|||||+|.+- ......| ..+....+++
T Consensus 98 ~~T~h-------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~iiiDE~~~~~---~~~~~~l~~~~~~~~~~~ 159 (459)
T 3upu_A 98 ASTIH-------SILKINPVTYEENVLFEQK--------EVPDLAKCRVLICDEVSMYD---RKLFKILLSTIPPWCTII 159 (459)
T ss_dssp EEEHH-------HHHTEEEEECSSCEEEEEC--------SCCCCSSCSEEEESCGGGCC---HHHHHHHHHHSCTTCEEE
T ss_pred hhhHH-------HHhccCcccccccchhccc--------ccccccCCCEEEEECchhCC---HHHHHHHHHhccCCCEEE
Confidence 11000 0000000 00000001000 01122368999999999873 2233333 3345567899
Q ss_pred eecCCCC
Q 000099 1156 LTGTPLQ 1162 (2240)
Q Consensus 1156 LTGTPLQ 1162 (2240)
+.|-|-|
T Consensus 160 ~vGD~~Q 166 (459)
T 3upu_A 160 GIGDNKQ 166 (459)
T ss_dssp EEECTTS
T ss_pred EECCHHH
Confidence 9998866
No 171
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.04 E-value=0.0035 Score=81.39 Aligned_cols=149 Identities=19% Similarity=0.311 Sum_probs=92.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~PslkV 1078 (2240)
.|-+.|.+++..++. +...+|....|+|||.++..++.++.. ....++||++|+... .+-...+.+. ++.+
T Consensus 180 ~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~ 251 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 251 (624)
T ss_dssp CCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhc--CCeE
Confidence 688999999988764 345688899999999999888877763 244689999998754 4445555443 2222
Q ss_pred EEEecchhh------------------------Hh-----------------HHHH------HHHhhcCCcEEEEcHHHH
Q 000099 1079 IYYVGAKDQ------------------------RS-----------------RLFS------QEVAALKFNVLVTTYEFI 1111 (2240)
Q Consensus 1079 vvy~Gskde------------------------Rk-----------------~l~~------qei~~~~fdVVITTYE~L 1111 (2240)
+-+ |.... .. ..+. ........+||++|...+
T Consensus 252 ~R~-~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 252 VRL-CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEC-CCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred Eee-ccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 211 11000 00 0000 011134568998887654
Q ss_pred HHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCC
Q 000099 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1112 ~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQN 1163 (2240)
.. ..+....|++||||||..+..+.+ + +..+....+++|-|=|.|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH-H---HHHHhcCCeEEEecChhcc
Confidence 32 345567899999999977654432 1 1122234689999998763
No 172
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.95 E-value=0.0033 Score=81.06 Aligned_cols=132 Identities=18% Similarity=0.123 Sum_probs=83.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
+..|-+.|..++..++. +...+|....|+|||.++.+++..+.. . ..++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~-~--g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES-L--GLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH-T--TCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh-c--CCeEEEecCcHHHHHHhHhhhc----cc
Confidence 45789999999998874 556789999999999988777766654 2 3589999998876665544321 00
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEee
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLT 1157 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLT 1157 (2240)
...+ ..++. ... . .+. ...-....+++|||||++.+-. ..+...+..+....+++|.
T Consensus 256 a~Ti-------h~ll~----~~~-~-------~~~--~~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTV-------HRLLG----YGP-Q-------GFR--HNHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEH-------HHHTT----EET-T-------EES--CSSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEE
T ss_pred HHHH-------HHHHc----CCc-c-------hhh--hhhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEE
Confidence 0000 00000 000 0 000 0111234789999999998842 2344445556677899999
Q ss_pred cCCCCC
Q 000099 1158 GTPLQN 1163 (2240)
Q Consensus 1158 GTPLQN 1163 (2240)
|-|-|.
T Consensus 313 GD~~QL 318 (574)
T 3e1s_A 313 GDTDQL 318 (574)
T ss_dssp ECTTSC
T ss_pred eccccc
Confidence 999773
No 173
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0063 Score=81.28 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=92.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~PslkV 1078 (2240)
.|-+.|.+++..++. +...++....|+|||.++..++.++... ...++||++|+.. +.+-...+.+.. +.+
T Consensus 360 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~~i 431 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--LKV 431 (802)
T ss_dssp CCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--CCE
T ss_pred cCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--ccE
Confidence 689999999988764 3346888999999999998888887753 2358999999875 455555565532 222
Q ss_pred EEEecchh----------------------hHhHH-----------------HH------HHHhhcCCcEEEEcHHHHHH
Q 000099 1079 IYYVGAKD----------------------QRSRL-----------------FS------QEVAALKFNVLVTTYEFIMY 1113 (2240)
Q Consensus 1079 vvy~Gskd----------------------eRk~l-----------------~~------qei~~~~fdVVITTYE~L~k 1113 (2240)
+-+..... ....+ +. ........+||++|...+..
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~ 511 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD 511 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh
Confidence 21111000 00000 00 00113456889888765542
Q ss_pred hhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCC
Q 000099 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1114 D~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQ 1162 (2240)
..+.. .|++||||||..+..... + +..+....+++|-|=|.|
T Consensus 512 --~~L~~-~fd~viIDEA~q~~e~~~-l---i~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 512 --KRLDT-KFRTVLIDESTQASEPEC-L---IPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp --TTCCS-CCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTS
T ss_pred --HHHhc-cCCEEEEECccccchHHH-H---HHHHhCCCEEEEEeCccc
Confidence 23444 899999999988753321 1 222234568999999866
No 174
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.70 E-value=0.0084 Score=80.08 Aligned_cols=150 Identities=20% Similarity=0.298 Sum_probs=92.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~Pslk 1077 (2240)
..|-+.|.+++..++. +...+|....|+|||.++..++..+... ...++||++|+... .+-...+.+. ++.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccc
Confidence 3689999999988764 3446889999999999998888877642 34689999998754 4444444432 222
Q ss_pred EEEEecchhh------------------------HhHHH-----------------H------HHHhhcCCcEEEEcHHH
Q 000099 1078 CIYYVGAKDQ------------------------RSRLF-----------------S------QEVAALKFNVLVTTYEF 1110 (2240)
Q Consensus 1078 Vvvy~Gskde------------------------Rk~l~-----------------~------qei~~~~fdVVITTYE~ 1110 (2240)
++-+ |.... ...+. . ........+||++|...
T Consensus 427 vvRl-g~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 505 (800)
T 2wjy_A 427 VVRL-CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 505 (800)
T ss_dssp EEEC-CCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGG
T ss_pred eEee-cccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhh
Confidence 2211 11100 00000 0 00112356788888765
Q ss_pred HHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCC
Q 000099 1111 IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1111 L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQN 1163 (2240)
+.. ..+....|++||||||..+..+.. + +..+....+++|-|=|.|-
T Consensus 506 ~~~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 506 AGD--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGC--TTTTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred hCC--hhhhcCCCCEEEEECCCCCCcHHH-H---HHHHhcCCeEEEecccccC
Confidence 432 335567899999999977643321 1 2222335689999998763
No 175
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.54 E-value=0.0078 Score=78.03 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHHHH-HHHHHHHCCC--Ce
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLVNW-KSELHKWLPS--VS 1077 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~QW-~~Ef~Kw~Ps--lk 1077 (2240)
-+.|..++..++. +...|+....|+|||.++..++..+.... ....++++++|+...... ...+..+... +.
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 5789999987764 56679999999999988877777665432 223478999998765443 3333332110 10
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCc-EEEEcHHH--HHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEE
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFN-VLVTTYEF--IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1154 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fd-VVITTYE~--L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RL 1154 (2240)
.....+... .....+ ++-++... +.... .....+++||||||+.+ + ...+...+..+....++
T Consensus 227 ~~~~~~~~~----------~~~Tih~ll~~~~~~~~~~~~~--~~~l~~d~lIIDEAsml-~-~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 227 DEQKKRIPE----------DASTLHRLLGAQPGSQRLRHHA--GNPLHLDVLVVDEASMI-D-LPMMSRLIDALPDHARV 292 (608)
T ss_dssp SCCCCSCSC----------CCBTTTSCC-----------CT--TSCCSCSEEEECSGGGC-B-HHHHHHHHHTCCTTCEE
T ss_pred HHHHhccch----------hhhhhHhhhccCCCchHHHhcc--CCCCCCCEEEEechhhC-C-HHHHHHHHHhCCCCCEE
Confidence 000000000 000011 11111111 11111 12237899999999955 3 23345556667777899
Q ss_pred EeecCCCCCC
Q 000099 1155 LLTGTPLQND 1164 (2240)
Q Consensus 1155 LLTGTPLQNn 1164 (2240)
+|.|-|.|-.
T Consensus 293 iLvGD~~QL~ 302 (608)
T 1w36_D 293 IFLGDRDQLA 302 (608)
T ss_dssp EEEECTTSGG
T ss_pred EEEcchhhcC
Confidence 9999987654
No 176
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.28 E-value=0.073 Score=68.60 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHH-HHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAV-LVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SL-L~QW~~Ef~Kw~ 1073 (2240)
.|-+.|.++|.. .....++-...|+|||.+.+.-|.+++...+ ....+|+|+++.. .......+.+.+
T Consensus 9 ~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 689999999961 1334566777999999999999999987433 3357999998764 444555565553
No 177
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.25 E-value=0.14 Score=63.30 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=88.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHC---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWL---P 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~---P 1074 (2240)
..|.|||...+..+.. ....++.-.=+.|||..+.+++++.... .....+++++|..- ...+..++..++ |
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4799999998876632 2336777789999999888877765542 23346888889753 333445655553 4
Q ss_pred C-CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-ccc--c
Q 000099 1075 S-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR--C 1150 (2240)
Q Consensus 1075 s-lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lk--s 1150 (2240)
. +...+...+. . .+ .. .....+.+.+- +...+.....+++|+||+|.+.+. ..++.++. .+. .
T Consensus 237 ~ll~~~~~~~~~-~--~I---~f-~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~ 303 (385)
T 2o0j_A 237 DFLQPGIVEWNK-G--SI---EL-DNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGR 303 (385)
T ss_dssp TTTSCCEEEECS-S--EE---EE-TTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTT
T ss_pred HhhhhhhccCCc-c--EE---Ee-CCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCC
Confidence 3 2111101110 0 00 01 11122222221 233455667899999999999863 23344443 222 3
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhh
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNL 1174 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnF 1174 (2240)
..+++++.||-..+ -+|.+...
T Consensus 304 ~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 304 RSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCcEEEEeCCCCch--hHHHHHHH
Confidence 46888889996553 55555543
No 178
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.83 E-value=0.037 Score=61.18 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=26.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.++..+||+|||..++.++..+.. . ..+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~-~--g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL-G--KKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-T--TCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEeec
Confidence 478889999999888877766553 2 2467888876
No 179
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=94.80 E-value=0.002 Score=72.09 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=50.9
Q ss_pred cccccc-CCCCcccccchhhhhc--CCCCcccccchhhccC---ccccccccccccCC---------CCCccccCCcccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEA--RPGSLSKRMPDELEEG---EIAVSGDSHMDHQQ---------SGSWTHDRDEGED 1795 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~--~P~dl~~~i~~~leeg---~ya~~~d~~~D~~~---------~~Sw~~~~~~~~d 1795 (2240)
..+.+| .+|+ |+||.+|+ +||||++ |..+|+.| +|.+..++..|+.+ +++.++ ..
T Consensus 92 ~~s~pF~~pV~----~~Yy~iIk~~~PMDL~t-Ik~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN~~s~~~-----~~ 161 (189)
T 2ro1_A 92 EPCRPLHQLAT----DSTFSLDQPGGTLDLTL-IRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADV-----QS 161 (189)
T ss_dssp TTHHHHHSCSC----CTTCSSSCSSCCCCHHH-HHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHCCSSCSS-----HH
T ss_pred ccchhhcCCCC----hhhhccccCCCcccHHH-HHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHCCCCHHH-----HH
Confidence 367788 7666 88999998 7999999 99999999 99999999999999 666666 66
Q ss_pred ccccc
Q 000099 1796 EQVLQ 1800 (2240)
Q Consensus 1796 ~~~~~ 1800 (2240)
+..|+
T Consensus 162 a~~L~ 166 (189)
T 2ro1_A 162 IIGLQ 166 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
No 180
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.34 E-value=0.12 Score=59.31 Aligned_cols=111 Identities=19% Similarity=0.092 Sum_probs=59.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH-HHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH-KWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~-Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
.+.-.++..+||.|||..++.++..+.. ...+++|+.|.-- .+ .. ..+.. .|.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d----~r-~~~~i~sr------lG~------------ 64 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKID----TR-SIRNIQSR------TGT------------ 64 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCC----GG-GCSSCCCC------CCC------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccC----ch-HHHHHHHh------cCC------------
Confidence 3334478899999999988888776654 2346777766421 00 00 00000 010
Q ss_pred hhcCCcEEEEcHHHHHHh-hhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEEEeecC
Q 000099 1097 AALKFNVLVTTYEFIMYD-RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD-~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
.-..+.+.+...+... ...+....+++|||||+|.+... ....+..+ .....++|||-
T Consensus 65 --~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 65 --SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp --SSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred --CccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 0011223333333322 12233346899999999987542 22233332 23567888886
No 181
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.15 E-value=0.058 Score=67.60 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=68.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~ 1100 (2240)
.++...-|+|||.....++. ..+.|||+|+. +...|.+.+.+. |. ...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~----------~~-------------~~~ 212 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANAS----------GI-------------IVA 212 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTT----------SC-------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhc----------Cc-------------ccc
Confidence 36788899999976655442 25789999976 567788777431 00 001
Q ss_pred CcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCC
Q 000099 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1101 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQN 1163 (2240)
-++-|.|++.+...........+++||||||..+- ...+...+..... .+++|.|-|-|-
T Consensus 213 ~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 213 TKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 12347788877655444333458999999998652 2233333333344 899999998653
No 182
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.13 E-value=0.28 Score=63.34 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=84.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---P 1074 (2240)
..|.|||...+..+. . ....++.-.=|.|||..+.+++++.+... ....++++.|.. ....+...+..++ |
T Consensus 162 ~~l~p~Q~~i~~~l~---~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS---S-KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH---H-CSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc---c-ccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 479999999887662 1 34467777899999998877776665433 234788898865 3444445666654 3
Q ss_pred C-CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc-cc--c
Q 000099 1075 S-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YR--C 1150 (2240)
Q Consensus 1075 s-lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~-Lk--s 1150 (2240)
. +.......+.. .+ .. .....+.+.+ .+...+.....+++||||+|.+++.. .++.++.. +. .
T Consensus 237 ~~~~~~~~~~~~~---~i---~~-~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~ 303 (592)
T 3cpe_A 237 DFLQPGIVEWNKG---SI---EL-DNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGR 303 (592)
T ss_dssp TTTSCCEEEECSS---EE---EE-TTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSS
T ss_pred HhhccccccCCcc---EE---Ee-cCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccCC
Confidence 2 11111100100 00 00 1112222222 12233445578899999999998742 44444442 22 3
Q ss_pred ceEEEeecCCCCC
Q 000099 1151 QRRLLLTGTPLQN 1163 (2240)
Q Consensus 1151 ~~RLLLTGTPLQN 1163 (2240)
..++++++||-..
T Consensus 304 ~~~ii~isTP~~~ 316 (592)
T 3cpe_A 304 RSKIIITTTPNGL 316 (592)
T ss_dssp CCEEEEEECCCTT
T ss_pred CceEEEEeCCCCc
Confidence 4688899999554
No 183
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.30 E-value=0.29 Score=55.97 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=26.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (2240)
++.-+||.|||..++.++..+.. ...++||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 57899999999988887766543 335788888753
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.23 E-value=0.11 Score=60.35 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEech
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPN 1059 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~ 1059 (2240)
.+.+|..+.|+|||..+-++...+...... .++++.|.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 356999999999999988777666542221 2355555433
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.80 E-value=0.4 Score=56.60 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=56.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~ 1099 (2240)
.+.+|..+.|+|||..+-++...+... ..+++.|....++..+...+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~--------------------------- 87 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKG--------------------------- 87 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHT---------------------------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcC---------------------------
Confidence 467899999999998887777666542 34555555444444444333220
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCc---hhHHHHHhhcc-ccceEEEeecC
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
....+.. .+ ...++|||||+|.+... ...+...+..+ ....++++|+|
T Consensus 88 -------~~~~~~~---~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 88 -------TINEFRN---MY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp -------CHHHHHH---HH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -------cHHHHHH---Hh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 0001111 11 13679999999998642 22344444433 34457888887
No 186
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.47 E-value=0.35 Score=54.07 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=26.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.++.-+||+|||..++.++..+.. ....++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEec
Confidence 377899999999888877766543 33578888876
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.47 E-value=0.31 Score=58.33 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Ll 1044 (2240)
++|+|.+.+..+...+.++. + .+|..+.|+|||..+.++...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 57899998888877665443 2 58899999999999988887765
No 188
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.43 E-value=0.45 Score=51.30 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=26.3
Q ss_pred cCcceEecccccccCCc-hhHHHHHhhccccceEEEeecCCC
Q 000099 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPL 1161 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTPL 1161 (2240)
....+|||||+|.+... ...+...+.......++++|+...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 45779999999998532 223444444545566777776543
No 189
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.72 E-value=0.75 Score=50.69 Aligned_cols=38 Identities=18% Similarity=-0.040 Sum_probs=25.4
Q ss_pred HHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1008 GLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1008 GLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.+.++..... .+.+.+|..+.|+|||..+-++...+..
T Consensus 39 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 39 LIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444443333 3556789999999999888777665543
No 190
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=91.20 E-value=0.89 Score=59.34 Aligned_cols=69 Identities=17% Similarity=0.083 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHH-HHHHHHHHHHHCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAV-LVNWKSELHKWLP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SL-L~QW~~Ef~Kw~P 1074 (2240)
.|-+.|.++|... ....++....|+|||.+.+.-|.+++...+ ....+|+|+.+.. .......+.+.++
T Consensus 2 ~L~~~Q~~av~~~------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999998641 344567788999999999999999987644 4457899997654 4445555666543
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.99 E-value=0.69 Score=48.78 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=20.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
..+.+|..+.|+|||..+-++...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44568999999999988877766554
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.58 E-value=0.43 Score=56.18 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred CcceEecccccccC-C-chhHHHHHhhccccceEEEeecCCCC
Q 000099 1122 DWKYIIIDEAQRMK-D-RESVLARDLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1122 kWd~VIIDEAHrLK-N-~~SKlskaLk~Lks~~RLLLTGTPLQ 1162 (2240)
...+|||||+|.+. . ....+...+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999999995 2 23345555555566778888877643
No 193
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.44 E-value=1.3 Score=46.43 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
..+.+|..+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 355799999999999988777766543
No 194
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.38 E-value=0.45 Score=56.52 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+.||..+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhcc
Confidence 456999999999998887765442 2355555544444444
No 195
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.98 E-value=1.3 Score=48.08 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~L 1043 (2240)
++..+..+...+..-......+|..+.|+|||..+-.+...+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444555554444322212246899999999998876665544
No 196
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.95 E-value=0.4 Score=55.16 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=18.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (2240)
...+.+|..+.|+|||..+-++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 445679999999999988766654
No 197
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.88 E-value=2.5 Score=45.41 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
.+.|..++..+..... .+.+.+|..+.|+|||..+-+++..+....+. .++++.-..++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~ 84 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFDTKDLIFRLKH 84 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEEHHHHHHHHHH
Confidence 3578888887776553 34556888999999998887776666533322 3444443444444433
No 198
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.27 E-value=1.2 Score=55.40 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~ 1099 (2240)
.+.+|..+.|+|||..+-++...+... ....+++.|....++..+...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~~~~~~~~~~~~--------------------------- 182 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEG--------------------------- 182 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHHHHHHHHHHHTT---------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHcc---------------------------
Confidence 456899999999998887776666543 2223555554444433333333210
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCc---hhHHHHHhhcc-ccceEEEeecC
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
....+.. .+. ...++|||||+|.+... ...+...+..+ .....+++|.+
T Consensus 183 -------~~~~~~~---~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 183 -------KLNEFRE---KYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp -------CHHHHHH---HHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred -------cHHHHHH---Hhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 0011111 111 25789999999999753 23344455443 33456666654
No 199
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.17 E-value=0.48 Score=57.32 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=25.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (2240)
.+.||..+.|+|||..+-++...+ ..+++.|....++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV 121 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHh
Confidence 467999999999999887776554 2355555444343
No 200
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.99 E-value=0.57 Score=55.26 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=26.5
Q ss_pred CcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.+.+|||||+|.+.. ....+.+.+.......+++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 568999999999853 233455556665566677776654
No 201
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.90 E-value=1.1 Score=53.44 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHH-HhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWML-SLYNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLl-sL~~n--~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
++.+++.+..++ ..... ..+.+|..+.|+|||..+-+++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333 32222 334689999999999988777766554
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.58 E-value=0.72 Score=55.00 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=24.9
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
.|.+|||||+|+|... ...+.+.|.......+++|+.+
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 6899999999999532 2234455555555566666654
No 203
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.41 E-value=0.27 Score=51.72 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000099 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1010 qwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2240)
.++........+.+|..+.|+|||..+-++.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3444444567788999999999998775543
No 204
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.32 E-value=1.5 Score=50.95 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=26.8
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
....+|||||+|++.. ....+.+.+.......++++|++.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3578999999999853 223344555555566677777664
No 205
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.31 E-value=0.98 Score=51.64 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000099 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1009 LqwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2240)
+..+........+.+|..++|+|||..+-++.
T Consensus 19 ~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 19 LEQVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp HHHHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 33444444556788999999999997775544
No 206
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.87 E-value=0.65 Score=53.83 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
++..+||.|||..+|..+.... ....++||+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeec
Confidence 6789999999988877765443 344578888875
No 207
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.29 E-value=1.1 Score=53.04 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
++.+...+...+... ....+.+|..+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555543333222 33456789999999999888777766543
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.52 E-value=1.3 Score=53.94 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
..+.||..+.|+|||..+-++... ...+++.|....+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~------~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE------SNATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH------TTCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHh------hcCcEEEeeHHHhhccc
Confidence 356799999999999888666432 12455555554444433
No 209
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=86.14 E-value=3.9 Score=52.34 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHH-HhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecC-CCCHHHHHHHHHHHhcCCCCccEEEEec--cc
Q 000099 1331 WILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG-TTSLEDRESAIVDFNSHDSDCFIFLLSI--RA 1406 (2240)
Q Consensus 1331 elLdrIL~kL-~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDG-sTs~eEReeaIk~FNs~Ds~~fVfLLST--rA 1406 (2240)
..|...|..+ ...+.++|||+.....++.+.+. .++.+.. .| +++ +.++++.|+..+ + .+|+++ ..
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~-q~~~~~---~~~~~~~~~~~~-~--~vl~~v~gg~ 448 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYV-ESEDSS---VEDLYSAISANN-K--VLIGSVGKGK 448 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEE-CCSSCC---HHHHHHHTTSSS-S--CEEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEE-cCCCCC---HHHHHHHHHhcC-C--eEEEEEecce
Confidence 3344444444 34567899999888888877762 3444433 33 334 456788886322 2 366665 79
Q ss_pred ccccCCCC-----CCCeEEEcCCCC
Q 000099 1407 AGRGLNLQ-----SADTVIIYDPDP 1426 (2240)
Q Consensus 1407 GGeGLNLQ-----aADtVIifD~pW 1426 (2240)
..+|||++ .+..||+.-.|+
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCC
T ss_pred ecccccccccCCcceeEEEEEcCCC
Confidence 99999999 378999987765
No 210
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.06 E-value=6.7 Score=47.28 Aligned_cols=44 Identities=7% Similarity=-0.094 Sum_probs=29.0
Q ss_pred cHHHHHHHH-HHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQ-WMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLq-wLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|+-|..-|. ++..... .+.+.+|...+|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444555554 3333332 3344588999999999999888877764
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.84 E-value=0.3 Score=51.25 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=18.9
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHH
Q 000099 1016 YNNKLNGILADEMGLGKTVQVMAL 1039 (2240)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIAL 1039 (2240)
.....+.+|..+.|+|||..+-++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGG
T ss_pred hCCCCcEEEECCCCccHHHHHHHH
Confidence 345678899999999999776444
No 212
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.67 E-value=1.6 Score=51.96 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHhhcCC----CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1002 RDYQIVGLQWMLSLYNNK----LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~----lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.+.....+.++......+ .+.+|..+.|+|||..+-++...+. ...+++.+...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~~ 106 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAGS 106 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEGG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccch
Confidence 456667776676655443 3568999999999988877765542 22365555533
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.46 E-value=1.3 Score=55.17 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
..|.||..+.|+|||+.|-++...+ ..+++.|....++..|.-|-.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchHH
Confidence 4677999999999999987776543 236777777777766654443
No 214
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.46 E-value=1.6 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
..+.+|..+.|+|||..+-++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999888766543
No 215
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.42 E-value=1.2 Score=51.53 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=25.6
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
+..+|||||+|.+... ...+.+.+.......+++++++.
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 4789999999998532 12344445555556677777765
No 216
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.24 E-value=3.4 Score=47.49 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=24.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (2240)
++.-+||.|||...+-.+..+.. . ...+||+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~-~--g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY-A--KQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH-T--TCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-c--CCceEEEEecc
Confidence 77889999999777766644433 2 34678888753
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.13 E-value=2.3 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~L 1043 (2240)
..+.+|..+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999998886665543
No 218
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=83.19 E-value=0.92 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~L 1043 (2240)
.++....|+|||..++.++..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4788899999999887765443
No 219
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.94 E-value=2.8 Score=49.74 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=24.7
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
.+.+|||||+|.+... ...+.+.+.......+++++++
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 5789999999998432 2234444544455667777765
No 220
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.89 E-value=1.3 Score=55.15 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+.||..+.|+|||..+-++...+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456899999999998887766543 12355555555555444
No 221
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.54 E-value=1.7 Score=52.59 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL 1061 (2240)
..+.+|..+.|+|||..+-++...+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4567899999999998887665432 235555544433
No 222
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.16 E-value=1.1 Score=53.43 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (2240)
.+.+|..+.|+|||..+-++...+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 456899999999998887766543
No 223
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.02 E-value=2 Score=50.52 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+.+.+|..+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 89 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhh
Confidence 34567899999999998886665432 2355555444444433
No 224
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=81.71 E-value=4.7 Score=50.21 Aligned_cols=128 Identities=15% Similarity=0.038 Sum_probs=65.9
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE-EEecc-
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVGA- 1084 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv-vy~Gs- 1084 (2240)
.+|..++.-+..+.-.+|+...|+|||..++.++..... ....++|++.-..-..++...+.....++..- +..|.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l 265 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQL 265 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCC
Confidence 446677654445555699999999999988887776653 22357888875433333333322111111000 00121
Q ss_pred -hhhHhHHHHHHHhhcCCcEEEE-----cHHHHHHhh-hhccccCcceEecccccccCC
Q 000099 1085 -KDQRSRLFSQEVAALKFNVLVT-----TYEFIMYDR-SKLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1085 -kdeRk~l~~qei~~~~fdVVIT-----TYE~L~kD~-s~L~kikWd~VIIDEAHrLKN 1136 (2240)
.....++...........++|. |...+.... ........++||||..+.+..
T Consensus 266 ~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 266 TDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp CHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 1122222111111223355553 334443322 222345789999999999864
No 225
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=81.35 E-value=2.2 Score=48.16 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=24.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
++..+||+|||...+-.+..... . ...+|++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~-~--~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQI-A--QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH-T--TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-c--CCeEEEEccc
Confidence 67899999999766666655443 2 2567888775
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.82 E-value=2.5 Score=49.77 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=26.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~ 1063 (2240)
.+.+|..+.|+|||..+-++...+ ..+++.|....+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELES 74 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhh
Confidence 456788999999999887776554 23556665444443
No 227
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.80 E-value=1.6 Score=56.50 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa 1041 (2240)
..+..+......+...+|.-+.|+|||..+-++..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 33444444444667889999999999987755544
No 228
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.96 E-value=4.2 Score=48.01 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|+.+++.+..++... ..+...+|..+.|+|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555553333321 22445689999999999888776665544
No 229
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.25 E-value=1.2 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
+.+|..+.|+|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 479999999999988877766553
No 230
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=78.51 E-value=6.4 Score=52.11 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=66.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHH-HHHHHHHHHCCCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLV-NWKSELHKWLPSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~-QW~~Ef~Kw~Pslk 1077 (2240)
.|-|.|.++|.. .....++...-|+|||.+.+.-|++|+...+ ....+|+|+.+.... .....+.+.++
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~--- 81 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG--- 81 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG---
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc---
Confidence 589999999864 1345566677899999999999999987433 345789999876443 33333443321
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEeccccc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1132 (2240)
.....+.|.|+..+.... .........+.|+|+..
T Consensus 82 --------------------~~~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 82 --------------------GAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp --------------------GGGTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred --------------------ccccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 011246788888776431 11122344578888764
No 231
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.50 E-value=6.6 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~L 1043 (2240)
+.+|..+.|+|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999998876655443
No 232
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=77.65 E-value=2.8 Score=53.26 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=24.7
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL 1061 (2240)
...+.||..+.|+|||..+-++...+ ..+++.|....+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn~~~l 274 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEI 274 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEEHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEEchHh
Confidence 34567999999999998886664322 245555543333
No 233
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=77.55 E-value=19 Score=44.83 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.+|..++.-+..+.-.+|+...|+|||..++.++..+.... ..++|++.-.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E 241 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLE 241 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 35777775455555679999999999998888777665422 2478888753
No 234
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.09 E-value=2.6 Score=53.26 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=31.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (2240)
...|.||..+.|+|||+.|-++...+- -+++.|....++..|.-|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCCSSSH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhcccCCH
Confidence 345678999999999998877765432 366666666666555433
No 235
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.77 E-value=5.4 Score=47.18 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=27.4
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCCCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTPLQ 1162 (2240)
++.+|||||+|.+-.. ...+.+.+..+....+++++.+-..
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 6889999999996321 2345566666656667777766433
No 236
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.23 E-value=9.8 Score=51.04 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=72.2
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHH----HHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY----LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~----L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
..+||-.+....+......|.++||.+.....+.-+.+. +...|+.+..++|+++..+|..+++.+..++.+ |+
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~--Iv 475 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID--VV 475 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC--EE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC--EE
Confidence 458898776555555556789999999988766554444 444489999999999999999999999865444 55
Q ss_pred EEecccccccCCCCCCCeEEEcCCC
Q 000099 1401 LLSIRAAGRGLNLQSADTVIIYDPD 1425 (2240)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifD~p 1425 (2240)
+.+.......+++...+.||+=+.+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 5555555556788888888875544
No 237
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.76 E-value=4.2 Score=48.39 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=25.4
Q ss_pred CcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.+.++||||+|.+.. ....+.+.+..+....+++|+.+.
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 478999999999853 222344555555555667776654
No 238
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=73.20 E-value=5.5 Score=47.17 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1010 qwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
..+........+.+|..++|+|||..+-++.... .....|++.|-
T Consensus 16 ~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~ 60 (304)
T 1ojl_A 16 NEIAMVAPSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLN 60 (304)
T ss_dssp HHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEE
T ss_pred HHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEe
Confidence 3333334556778999999999998775544321 12335666654
No 239
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.89 E-value=4.8 Score=50.49 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (2240)
..|.||..+.|+|||+.|-++...+- .+++.|....++..|.-|-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSSHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCchH
Confidence 45679999999999999877765432 3677777777766665443
No 240
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=72.86 E-value=4.5 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=18.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
.+.+|..++|+|||..+-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999888766554
No 241
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.66 E-value=2.3 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=18.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (2240)
..+.+|..+.|+|||..+-++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45668999999999988766554
No 242
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.35 E-value=6.2 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (2240)
.+.||..+.|+|||..+-++...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999998887665443
No 243
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=71.01 E-value=12 Score=45.62 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
..|..++.-+..+.-.||+...|.|||..++.++..+.. ...++|++.-.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE 83 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE 83 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC
Confidence 346666654444444699999999999988888776654 34688888754
No 244
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.93 E-value=2.9 Score=52.54 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (2240)
..|.||..+.|+|||+.+-++...+- -+++.|....++..|.-|
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccchH
Confidence 45679999999999999877765432 356666666666555433
No 245
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=69.42 E-value=13 Score=44.15 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=35.1
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.+|..++.-+..+.-.||+...|+|||..++.++..... .+ .++|++.-.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLE 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESS
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECC
Confidence 456666644444555799999999999888877766543 22 688888854
No 246
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=69.40 E-value=16 Score=46.39 Aligned_cols=85 Identities=15% Similarity=0.297 Sum_probs=56.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecc-----------hh--
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA-----------KD-- 1086 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy~Gs-----------kd-- 1086 (2240)
...|..-+|+|||+.+..++.. ..+|+|||||+. ...+|..+|..|+|.. |..|-.. .+
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHH
Confidence 3477888999999887666532 246899999976 6788999999998865 4443321 11
Q ss_pred -hHhHHHHHHHhhcCCcEEEEcHHHHHH
Q 000099 1087 -QRSRLFSQEVAALKFNVLVTTYEFIMY 1113 (2240)
Q Consensus 1087 -eRk~l~~qei~~~~fdVVITTYE~L~k 1113 (2240)
.|-..+. ........|||+|...++.
T Consensus 89 ~~Rl~~l~-~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 89 SSRLSTLY-QLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHHHH-HGGGCCSSEEEEEHHHHHB
T ss_pred HHHHHHHH-HHHhCCCCEEEEEHHHHhh
Confidence 1111111 1223455799999998874
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=69.13 E-value=16 Score=48.28 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
...+.||.-+.|+|||..+-++...+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 345679999999999988877766554
No 248
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=68.41 E-value=8.2 Score=46.33 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHH-Hhh-c----CCCCeEE--EcCCCchHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWML-SLY-N----NKLNGIL--ADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1002 RPYQleGLqwLl-sL~-~----n~lnGIL--ADEMGLGKTIQAIALIa~Ll 1044 (2240)
|+.+++.|..++ ... . .....+| ..+.|+|||..+-.++..+.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 455666554443 322 1 2334567 79999999988877765554
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=68.00 E-value=17 Score=41.19 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCeEEEEec----chhhHhHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVG----AKDQRSRLF 1092 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~Ef~Kw~PslkVvvy~G----skdeRk~l~ 1092 (2240)
..+.++.-..|.|||-.|+++...... ...+++||- ... ...=..++.+-++ +.+..+.- ....+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~-~~~gE~~~l~~L~-v~~~~~g~gf~~~~~~~~~-- 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGT-WPNGERNLLEPHG-VEFQVMATGFTWETQNREA-- 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCS-SCCHHHHHHGGGT-CEEEECCTTCCCCGGGHHH--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCC-CCccHHHHHHhCC-cEEEEcccccccCCCCcHH--
Confidence 445688889999999999999887764 234677773 210 0000011111121 22211110 0000000
Q ss_pred HHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC----chhHHHHHhhccccceEEEeecCCCCCCHHHH
Q 000099 1093 SQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKEL 1168 (2240)
Q Consensus 1093 ~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN----~~SKlskaLk~Lks~~RLLLTGTPLQNnL~EL 1168 (2240)
.... --..+..-...+..-.|++|||||.-.+.+ ....+...|..-....-++|||- +-..+|
T Consensus 101 --~~~~--------a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr---~ap~~l 167 (196)
T 1g5t_A 101 --DTAA--------CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR---GCHRDI 167 (196)
T ss_dssp --HHHH--------HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS---SCCHHH
T ss_pred --HHHH--------HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC---CCcHHH
Confidence 0000 012222334556667899999999854311 23345555655556668999995 456666
Q ss_pred HHHHhhh
Q 000099 1169 WSLLNLL 1175 (2240)
Q Consensus 1169 wSLLnFL 1175 (2240)
..+-+++
T Consensus 168 ~e~AD~V 174 (196)
T 1g5t_A 168 LDLADTV 174 (196)
T ss_dssp HHHCSEE
T ss_pred HHhCcce
Confidence 6655544
No 250
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=67.94 E-value=17 Score=39.35 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=58.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcE
Q 000099 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNV 1103 (2240)
Q Consensus 1026 DEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdV 1103 (2240)
---|.|||..++.+...+.. .+ .++|+|- |...+..|... . ...+++
T Consensus 9 ~kgG~GKTt~a~~la~~la~-~g--~~vlliD~D~~~~~~~~~~~----~------------------------~~~~~~ 57 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSR-SG--YNIAVVDTDPQMSLTNWSKA----G------------------------KAAFDV 57 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-TT--CCEEEEECCTTCHHHHHHTT----S------------------------CCSSEE
T ss_pred CCCCccHHHHHHHHHHHHHH-CC--CeEEEEECCCCCCHHHHHhc----C------------------------CCCCcE
Confidence 44689999999998888875 32 3666665 44455555430 0 112344
Q ss_pred EEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhh
Q 000099 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL 1175 (2240)
Q Consensus 1104 VITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFL 1175 (2240)
+-...+.+......+.. .+++||||=.-.+ + .....+.. .++. +++-.+|-... ..+..++.++
T Consensus 58 ~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~-~---~~~~~~l~-~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 58 FTAASEKDVYGIRKDLA-DYDFAIVDGAGSL-S---VITSAAVM-VSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EECCSHHHHHTHHHHTT-TSSEEEEECCSSS-S---HHHHHHHH-HCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred EecCcHHHHHHHHHhcC-CCCEEEEECCCCC-C---HHHHHHHH-HCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 44444445444444443 5899999965544 2 11111111 2333 33333444444 5666655555
No 251
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=67.35 E-value=8.1 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=16.7
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (2240)
+.||..+.|+|||..+-++..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 569999999999987755543
No 252
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=67.07 E-value=13 Score=43.26 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2240)
|+..++.|..++. .+...+|..+.|+|||..+-.++
T Consensus 17 R~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 17 REEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp CHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHH
Confidence 5555655544433 24567899999999996654443
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=65.76 E-value=13 Score=50.02 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
..+.+|..+.|+|||..+-++...+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346799999999999888777766543
No 254
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=64.40 E-value=14 Score=46.46 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=23.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
.+++-..|+|||.++..++.++.. . .+.+++|+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~-~--G~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK-R--GYKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH-T--TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEEe
Confidence 467788999999998888777654 2 24555555
No 255
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.57 E-value=11 Score=47.30 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
..+|..++.-+..+.-.||+...|.|||..++.++...... ..++|++.-.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 34577777545555557999999999999998888777642 3578888753
No 256
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=63.27 E-value=15 Score=39.99 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
.+.+|..+.|+|||..+.++...+.. ...++++|.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE
Confidence 56789999999999988777766542 224555554
No 257
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=63.01 E-value=25 Score=42.54 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=66.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh---cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~---rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfL 1401 (2240)
..+||-....-.+..+...+.++||.+..+..+.-+.+.|.. .++.+..++|+++..+|...++.+..++. .|++
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~--~Iiv 122 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY--HILV 122 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCC--SEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCC--CEEE
Confidence 457887754444444446788999999999998888888877 58899999999999888888888876434 4555
Q ss_pred Eecccccc---cCCCCCCCeEEE
Q 000099 1402 LSIRAAGR---GLNLQSADTVII 1421 (2240)
Q Consensus 1402 LSTrAGGe---GLNLQaADtVIi 1421 (2240)
.+....-. -+++...+.||+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEE
T ss_pred ECHHHHHHHHHHhccccccEEEE
Confidence 55443311 144455666555
No 258
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.72 E-value=2.4 Score=53.10 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (2240)
..|.||..+.|+|||..|-++...+- .+++.|....++..|.-+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN------ATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEehhhhhhcccch
Confidence 45679999999999999877765431 367777766666655433
No 259
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=62.66 E-value=6.1 Score=49.33 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=27.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (2240)
.+.||..+.|+|||..+-++...+ +...+++.|....+.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l----~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL----GSKVPFCPMVGSEVY 102 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH----CTTSCEEEEEGGGGC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh----CCCceEEEEeHHHHH
Confidence 467999999999999988776654 222466666554443
No 260
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=62.59 E-value=14 Score=40.39 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=29.7
Q ss_pred HHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1007 VGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1007 eGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
.+|..++. -+..+.-.+|+-+.|+|||..+..++. . . .+++++|.-
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~-~--~~~v~~i~~ 53 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L-S--GKKVAYVDT 53 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H-H--CSEEEEEES
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H-c--CCcEEEEEC
Confidence 34566653 333444468899999999988776665 1 2 246677664
No 261
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.40 E-value=3.6 Score=51.51 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
..|.||..+.|+|||..+-++...+ ..+++.|....++..|.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhcccc
Confidence 4556899999999999987776543 13566666565555443
No 262
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=62.25 E-value=15 Score=44.34 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=18.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
..+.+|..++|+|||..+-++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 446799999999999887666543
No 263
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.08 E-value=16 Score=49.18 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
..+.||..+.|+|||+.+-++...+ ..+++.|....++..|.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWF 552 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhcccc
Confidence 4567999999999998886665422 23555555555666654
No 264
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=59.76 E-value=18 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa 1041 (2240)
.+.+|.-++|+|||..+-++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999988766554
No 265
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=59.06 E-value=18 Score=45.62 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=24.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
.+++-..|+|||.++..++.++.. . ...+++|+
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~-~--G~kVllv~ 135 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQK-R--GYKVGVVC 135 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT-T--TCCEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHH-C--CCeEEEEe
Confidence 467888999999999888877763 2 23555555
No 266
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=58.81 E-value=11 Score=40.14 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=20.0
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
.+...+|.-+.|+|||..+-++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355568899999999988766655443
No 267
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=55.86 E-value=34 Score=47.84 Aligned_cols=98 Identities=10% Similarity=0.075 Sum_probs=72.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHH----hcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~----~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
..+||-.+....+..+...+.+|||.+..+..+.-+.+.|. ..++.+..++|..+..++...++.+..+. +.|+
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIv 710 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDIL 710 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEE
Confidence 35788877665555556678899999999887766555554 33678999999999999999999888644 4466
Q ss_pred EEecccccccCCCCCCCeEEEcCC
Q 000099 1401 LLSIRAAGRGLNLQSADTVIIYDP 1424 (2240)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifD~ 1424 (2240)
+.+.......+++...+.||+=..
T Consensus 711 V~T~~ll~~~~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIVDEE 734 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEEESG
T ss_pred EECHHHHhCCccccccceEEEech
Confidence 666667777788888877776433
No 268
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=55.86 E-value=68 Score=37.24 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa 1041 (2240)
|+..+..|.- +.. ...+|..+.|+|||..+-.++.
T Consensus 18 R~~el~~L~~----l~~-~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 18 REKEIEKLKG----LRA-PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp CHHHHHHHHH----TCS-SEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHH----hcC-CcEEEECCCCCCHHHHHHHHHH
Confidence 4555554433 333 4668899999999976655543
No 269
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=55.39 E-value=56 Score=35.59 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1008 GLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1008 GLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
+|..++. -+..+.-.+|+.+.|+|||..+..++..+... .++++++.-
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~ 59 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTT 59 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEES
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEc
Confidence 3444442 23334446788999999998887776555432 346777763
No 270
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=55.13 E-value=13 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=19.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~L 1043 (2240)
+.+|..++|+|||..+-++...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999887766655
No 271
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=55.07 E-value=16 Score=50.82 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=54.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCc
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fd 1102 (2240)
|+| .-|+|||.+++.-|++++.......++|+|||....-+-...+...++. ....+
T Consensus 6 V~a-gAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~~----------------------~~~~~ 62 (1166)
T 3u4q_B 6 LVG-RSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDM----------------------GGMIR 62 (1166)
T ss_dssp EEE-CTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSSC----------------------SEESS
T ss_pred EEe-CCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhhh----------------------cceee
Confidence 444 4799999999999999997655557899999998655533333322210 11246
Q ss_pred EEEEcHHHHHHhhhhcccc-CcceEeccccc
Q 000099 1103 VLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQ 1132 (2240)
Q Consensus 1103 VVITTYE~L~kD~s~L~ki-kWd~VIIDEAH 1132 (2240)
|.|.|+..+.... |... .....|+|+..
T Consensus 63 ~~V~TFhsla~~i--l~~~g~~~~~ild~~~ 91 (1166)
T 3u4q_B 63 AQVFSFSRLAWRV--LQHTGGMSRPFLTSTG 91 (1166)
T ss_dssp EEEECHHHHHHHH--HHHHSCTTSCEECHHH
T ss_pred eEEecHHHHHHHH--HHHcCCCcccCcCHHH
Confidence 8899998876431 1111 23456677654
No 272
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=53.97 E-value=34 Score=48.13 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=68.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---CCCCeEEEechHHHHH-HHHHHHHHCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---NYGPHLIIVPNAVLVN-WKSELHKWLP 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---~~GP~LIVVP~SLL~Q-W~~Ef~Kw~P 1074 (2240)
..|.+-|.++|.. .+.+.++...-|+|||.+.+.-|.+++.... ....+|||+++....+ -...+...+.
T Consensus 9 ~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 9 STWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 4789999999752 2556788888999999998888888875322 3457899999765433 2223332210
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEeccccc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1132 (2240)
.. ....++.. .+.. ....-.++.|+|+..|+... .....+...+-|+||..
T Consensus 83 ~~----~~~~~~~~-~~~~--~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 83 KE----LVQRPGSL-HIRR--QLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp HH----HHHSTTCH-HHHH--HHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred HH----hhcCcchH-HHHH--HHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 00 00000000 1110 11112357899998887542 22333455556888754
No 273
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=52.88 E-value=30 Score=48.15 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=71.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh---cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~---rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfL 1401 (2240)
..+||-.+..-.+..+...+.++||.+..+..+.-+.+.|.. .++.+..++|+++..+|...+..+..++.+ |++
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~--IlV 179 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILV 179 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS--EEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC--EEE
Confidence 458898866555555567888999999999999888888887 578999999999988888888888864444 555
Q ss_pred Eecccccc---cCCCCCCCeEEEcCC
Q 000099 1402 LSIRAAGR---GLNLQSADTVIIYDP 1424 (2240)
Q Consensus 1402 LSTrAGGe---GLNLQaADtVIifD~ 1424 (2240)
.+....-. -+++...++||+=+.
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred ECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 44433311 145667777776444
No 274
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=51.43 E-value=44 Score=37.73 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.4
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALI 1040 (2240)
.+.+|..+.|+|||..+-++.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 346899999999997765544
No 275
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=49.50 E-value=30 Score=41.10 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
..+.+|..++|+|||..+.++...+....+ .++++|.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEE
Confidence 456789999999999999888877762222 3555544
No 276
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=47.13 E-value=45 Score=38.39 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.1
Q ss_pred CeEEEcCCCchHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALI 1040 (2240)
+.+|..+.|+|||..+-++.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHH
Confidence 46899999999997765544
No 277
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=44.87 E-value=31 Score=42.21 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=38.9
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1007 eGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+|.+++. -+..+.-.+|+.+.|+|||..++.++..+.. ..+++++|.......+|
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH
Confidence 35676664 3444555688999999999999888877653 23578888865555554
No 278
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=44.85 E-value=46 Score=36.85 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=32.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
+.-.+|+.+.|+|||..++.++....... ..+++++.-.....+....+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHH
Confidence 33468999999999998888776544322 347788875433333333333
No 279
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=44.31 E-value=24 Score=46.60 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=36.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (2240)
+.+..-|.++|..++.... +. .+|-.+=|.|||..+..++..+. +.++|.+|+.
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~~-~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-GV-AAVTAARGRGKSALAGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-EE-EEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhhh-Ce-EEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCH
Confidence 4678899999988876543 22 36666699999965555554442 2457788864
No 280
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=41.88 E-value=49 Score=42.21 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.8
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALI 1040 (2240)
.+.+|.-+.|+|||..+-++.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 356899999999998775554
No 281
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=41.24 E-value=87 Score=37.52 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=66.9
Q ss_pred hcccHHHHHHHHHHHHH-hcCCeEEEEecchhHHHHHHHHHHhc-Cc---eEEeecCCCCHHHHHHHHHHHhcCCCCccE
Q 000099 1325 KSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWR-QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~-atGhKVLIFSQ~t~~LDiLed~L~~r-Gi---ky~rLDGsTs~eEReeaIk~FNs~Ds~~fV 1399 (2240)
..+||-.....++..+. ..+.++||.|.....+.-..+.|... ++ .+..++|+....++...... ..|
T Consensus 32 tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~i 104 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKV 104 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCE
Confidence 34788766555544443 46789999999988877666555543 65 89999999998876554432 235
Q ss_pred EEEecccccc-----cCCCCCCCeEEEcCCC--CChhhHHHHhhhhhc
Q 000099 1400 FLLSIRAAGR-----GLNLQSADTVIIYDPD--PNPKNEEQAVARAHR 1440 (2240)
Q Consensus 1400 fLLSTrAGGe-----GLNLQaADtVIifD~p--WNP~~d~QAiGRAhR 1440 (2240)
++++...... .+++...+.||+=+.+ -+...+.....+..+
T Consensus 105 vv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 105 IVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp EEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred EEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHh
Confidence 6666554332 3566777777763333 223344444444433
No 282
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=40.60 E-value=29 Score=46.77 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=26.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (2240)
.+.||..+.|+|||..+=++... ...+++.|....++..|..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e------lg~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE------TGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT------TTCEEEEEEHHHHHSSCTTH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH------hCCeEEEEEhHHhhcccchH
Confidence 45689999999999887655432 12244444445555555433
No 283
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=40.26 E-value=1.5e+02 Score=32.43 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=56.7
Q ss_pred hcccHHHHHHHHHHHH-Hh--cCCeEEEEecchhHHHHHHHHHHhc-----CceEEeecCCCCHHHHHHHHHHHhcCCCC
Q 000099 1325 KSCGKLWILDRILIKL-QR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL-~a--tGhKVLIFSQ~t~~LDiLed~L~~r-----Giky~rLDGsTs~eEReeaIk~FNs~Ds~ 1396 (2240)
..+||-....-.+... .. .+.++||.+..+..+.-+.+.+... ++.+..++|+.+..+....+.. ..
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~-- 134 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NC-- 134 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SC--
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CC--
Confidence 3578875443333332 22 2348999999988887776666543 7889999999987666554432 22
Q ss_pred ccEEEEecccc-----cccCCCCCCCeEEEcC
Q 000099 1397 CFIFLLSIRAA-----GRGLNLQSADTVIIYD 1423 (2240)
Q Consensus 1397 ~fVfLLSTrAG-----GeGLNLQaADtVIifD 1423 (2240)
+.|++.+.... ...+++...++||+=+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 23444443322 2345677777777633
No 284
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=38.78 E-value=39 Score=38.98 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=27.9
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---------CCCCeEEEechH
Q 000099 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKG---------NYGPHLIIVPNA 1060 (2240)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---------~~GP~LIVVP~S 1060 (2240)
..+.-.+|+-+.|+|||..+..++..+. .+ ..++++++.-..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCC
Confidence 3455568889999999988877766443 22 135677776433
No 285
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=37.03 E-value=48 Score=39.60 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=22.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
.++.-..|.|||..+..+...+.. . .+.++++.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~-~--g~kV~lv~ 139 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVD-E--GKSVVLAA 139 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH-T--TCCEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHh-c--CCEEEEEc
Confidence 356778999999888776655543 2 34566655
No 286
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=36.18 E-value=1.5e+02 Score=28.95 Aligned_cols=99 Identities=10% Similarity=-0.148 Sum_probs=59.6
Q ss_pred HHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcC--CCCccEEEEecccccccCCCCC
Q 000099 1338 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNLQS 1415 (2240)
Q Consensus 1338 ~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~--Ds~~fVfLLSTrAGGeGLNLQa 1415 (2240)
..+...+..|..+......++.+ ....+..+.+|-.++..+-.++++.++.. ...+.|++++...-..-...-.
T Consensus 21 ~~~l~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~ 96 (133)
T 3nhm_A 21 RLLLSGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQ 96 (133)
T ss_dssp HHHHTTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTS
T ss_pred HHHHhCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhh
Confidence 33344677777776655555544 44567888888777665566677776653 2356777777653222122222
Q ss_pred --CCeEEEcCCCCChhhHHHHhhhhhccC
Q 000099 1416 --ADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1416 --ADtVIifD~pWNP~~d~QAiGRAhRIG 1442 (2240)
|+. ++--|+++.....++.++.+-.
T Consensus 97 ~g~~~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 97 PVPDA--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp CCCSE--EEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCce--EEeccCCHHHHHHHHHHHHhhh
Confidence 333 3345899999999998886543
No 287
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=36.12 E-value=66 Score=38.60 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=22.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
++.-..|.|||.++..+..++.. ..+.+|++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEe
Confidence 55677999999888777666543 235677765
No 288
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=35.95 E-value=1.8e+02 Score=32.47 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=55.6
Q ss_pred hcccHHHH-HHHHHHHHH-------hcCCeEEEEecchhHHHHHHH----HHHhcCceEEeecCCCCHHHHHHHHHHHhc
Q 000099 1325 KSCGKLWI-LDRILIKLQ-------RTGHRVLLFSTMTKLLDILEE----YLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (2240)
Q Consensus 1325 rsSGKLel-LdrIL~kL~-------atGhKVLIFSQ~t~~LDiLed----~L~~rGiky~rLDGsTs~eEReeaIk~FNs 1392 (2240)
..+||-.. +.-++..+. ..+.++||.+..+..+.-+.+ ++...++.+..+.|+.+.......+..
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER--- 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---
Confidence 45788654 444444443 246789999998877655544 445558999999999987766554432
Q ss_pred CCCCccEEEEecccc-----cccCCCCCCCeEEEc
Q 000099 1393 HDSDCFIFLLSIRAA-----GRGLNLQSADTVIIY 1422 (2240)
Q Consensus 1393 ~Ds~~fVfLLSTrAG-----GeGLNLQaADtVIif 1422 (2240)
.+.|++.+.... ...+++...++||+=
T Consensus 152 ---~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 152 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp ---CCSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred ---CCCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 233444443221 123466777776653
No 289
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=35.53 E-value=1.9e+02 Score=32.72 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=54.2
Q ss_pred hcccHHHH-HHHHHHHHHhc--CCeEEEEecchhHHHHHHHHHH----hcCceEEeecCCCCHHHHHHHHHHHhcCCCCc
Q 000099 1325 KSCGKLWI-LDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDC 1397 (2240)
Q Consensus 1325 rsSGKLel-LdrIL~kL~at--GhKVLIFSQ~t~~LDiLed~L~----~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~ 1397 (2240)
..+||-.. +.-++..+... +.++||.+..+..+.-+.+.+. ..++.+..+.|+.........+ .. .+
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~---~~ 162 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK---KP 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT---CC
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC---CC
Confidence 45788764 33444444433 4579999999887766555554 3488899999998865544333 21 23
Q ss_pred cEEEEecccc------cccCCCCCCCeEEE
Q 000099 1398 FIFLLSIRAA------GRGLNLQSADTVII 1421 (2240)
Q Consensus 1398 fVfLLSTrAG------GeGLNLQaADtVIi 1421 (2240)
.|++.+.... ..++++...++||+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 3444443222 23466777776665
No 290
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=33.62 E-value=4.4 Score=45.43 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=27.5
Q ss_pred hcCCCCcccccchhhccCccccccccccccCC
Q 000099 1751 EARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1751 i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
+++||||.. |..+|+.|+|.++.+...|+.+
T Consensus 101 ~k~PmDL~~-i~kKl~~~~Y~s~~eF~~Dv~l 131 (183)
T 3lqh_A 101 QQQPLDLEG-VKRKMDQGNYTSVLEFSDDIVK 131 (183)
T ss_dssp C--CCSHHH-HHHHHHTTCCCCHHHHHHHHHH
T ss_pred hcCCccHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 599999999 9999999999999999999986
No 291
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=32.90 E-value=63 Score=39.16 Aligned_cols=55 Identities=16% Similarity=0.017 Sum_probs=36.8
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000099 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (2240)
Q Consensus 1007 eGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (2240)
.+|.+++. -+..+.-.+|+-+.|+|||..++.++..+.. ..+++++|.-.....+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDP 103 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCH
Confidence 45666664 3334445688999999999998888876653 2357788875443333
No 292
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=32.76 E-value=62 Score=38.31 Aligned_cols=35 Identities=29% Similarity=0.184 Sum_probs=22.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
..+|....|.|||..+..+...+....+ ..+++|.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 3456678999999888776665543222 2555554
No 293
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=32.08 E-value=1.3e+02 Score=33.39 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=43.0
Q ss_pred hcccHHHH-HHHHHHHHHh--cCCeEEEEecchhHHHHHHHHHHhc-----CceEEeecCCCCHHHHHHH
Q 000099 1325 KSCGKLWI-LDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1325 rsSGKLel-LdrIL~kL~a--tGhKVLIFSQ~t~~LDiLed~L~~r-----Giky~rLDGsTs~eEReea 1386 (2240)
..+||-.. +.-++..+.. .+.++||.+..+..+.-+.+.+... ++.+..++|+....++...
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh
Confidence 35788765 4444554432 3568999999988887777766543 6788899999887665443
No 294
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=31.51 E-value=88 Score=39.37 Aligned_cols=50 Identities=4% Similarity=-0.236 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000099 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2240)
Q Consensus 1009 LqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (2240)
|..++.-+..+.-.+|+...|+|||..++.++..+.. ....++|++.-..
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~ 281 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE 281 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC
Confidence 5555543344444689999999999998888776653 1135888888543
No 295
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.63 E-value=70 Score=31.27 Aligned_cols=96 Identities=10% Similarity=-0.077 Sum_probs=55.6
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcC--CCCccEEEEecccccccCCCC--CCC
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNLQ--SAD 1417 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~--Ds~~fVfLLSTrAGGeGLNLQ--aAD 1417 (2240)
..|..|..+......++.+ ....+..+.+|-.++..+-.++++.++.. ...+.|++++...-..-...- .|+
T Consensus 25 ~~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~ 100 (127)
T 3i42_A 25 MLGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFD 100 (127)
T ss_dssp HTTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCS
T ss_pred HcCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhH
Confidence 3466776666555544444 44567788888766655556666666653 455667777654332211111 133
Q ss_pred eEEEcCCCCChhhHHHHhhhhhccCC
Q 000099 1418 TVIIYDPDPNPKNEEQAVARAHRIGQ 1443 (2240)
Q Consensus 1418 tVIifD~pWNP~~d~QAiGRAhRIGQ 1443 (2240)
. ++--|+++....+++.++++-+.
T Consensus 101 ~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 101 F--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp E--EEESSCCHHHHHHHHHHHC----
T ss_pred H--heeCCCCHHHHHHHHHHhhccCC
Confidence 3 44568899999999988877554
No 296
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=30.03 E-value=1e+02 Score=42.71 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=64.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHH----hcCc----eEEeecCCCCHHHHHHHHHHHhcCCCC
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL----VYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~----~rGi----ky~rLDGsTs~eEReeaIk~FNs~Ds~ 1396 (2240)
..+||-.++.-++..+...+.++||.+..+..+.-+.+.|. ..++ .+..++|+++..++.+.++.+..
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----
Confidence 45788866666666667778899999999988766555554 4466 88999999998888777777764
Q ss_pred ccEEEEecccccccCC-CCCCCeEEE
Q 000099 1397 CFIFLLSIRAAGRGLN-LQSADTVII 1421 (2240)
Q Consensus 1397 ~fVfLLSTrAGGeGLN-LQaADtVIi 1421 (2240)
+.|++.+....-.-+. |...++||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 3455555433322222 556666665
No 297
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=30.01 E-value=2.1e+02 Score=33.65 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=58.0
Q ss_pred hcccHHHHHHH-HHHHHHh--cCCeEEEEecchhHHHHHHHHHHhc-----CceEEeecCCCCHHHHHHHHHHHhcCCCC
Q 000099 1325 KSCGKLWILDR-ILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (2240)
Q Consensus 1325 rsSGKLelLdr-IL~kL~a--tGhKVLIFSQ~t~~LDiLed~L~~r-----Giky~rLDGsTs~eEReeaIk~FNs~Ds~ 1396 (2240)
..+||-....- ++..+.. .+.++||.|..+..+.-+.+.+... ++.+..++|+.+..+....+.. +.
T Consensus 54 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~-- 128 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NC-- 128 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SC--
T ss_pred CCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CC--
Confidence 34788754332 2322221 3568999999998887776666543 7889999999987766554433 22
Q ss_pred ccEEEEecccc-----cccCCCCCCCeEEEcC
Q 000099 1397 CFIFLLSIRAA-----GRGLNLQSADTVIIYD 1423 (2240)
Q Consensus 1397 ~fVfLLSTrAG-----GeGLNLQaADtVIifD 1423 (2240)
..|++.+.... ...+++...+.||+=+
T Consensus 129 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 129 PHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred CCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 23555554333 2345677777777633
No 298
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=29.96 E-value=2.1e+02 Score=31.57 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=51.2
Q ss_pred hcccHHHH-HHHHHHHHH------hcCCeEEEEecchhHHHHHHHHHHhc----CceEEeecCCCCHHHHHHHHHHHhcC
Q 000099 1325 KSCGKLWI-LDRILIKLQ------RTGHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNSH 1393 (2240)
Q Consensus 1325 rsSGKLel-LdrIL~kL~------atGhKVLIFSQ~t~~LDiLed~L~~r----Giky~rLDGsTs~eEReeaIk~FNs~ 1393 (2240)
..+||-.. +.-++..+. ..+.++||.+..+..+.-+.+.+... ++.+..++|+.........+ +
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-- 145 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N-- 145 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T--
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C--
Confidence 35788764 223333332 35778999999988877666666543 47888889987655443332 2
Q ss_pred CCCccEEEEeccccc------ccCCCCCCCeEEE
Q 000099 1394 DSDCFIFLLSIRAAG------RGLNLQSADTVII 1421 (2240)
Q Consensus 1394 Ds~~fVfLLSTrAGG------eGLNLQaADtVIi 1421 (2240)
.+.|++.+....- ..+++...++||+
T Consensus 146 --~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 --NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp --TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2345444433221 1355556666655
No 299
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=29.68 E-value=1.8e+02 Score=27.75 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=49.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC--CCCeEE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ--SADTVI 1420 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ--aADtVI 1420 (2240)
.|..|..+......+..+ ....+..+.+|-.++..+-.++++.++.......|++++...... ...- .|+.+
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~- 97 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEY- 97 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEE-
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccce-
Confidence 466666555544444433 345677777776665433345555554433455677776543222 2221 23333
Q ss_pred EcCCCCChhhHHHHhhhhhc
Q 000099 1421 IYDPDPNPKNEEQAVARAHR 1440 (2240)
Q Consensus 1421 ifD~pWNP~~d~QAiGRAhR 1440 (2240)
+.-|+++....+++.++.|
T Consensus 98 -l~Kp~~~~~l~~~i~~~~~ 116 (116)
T 3a10_A 98 -VVKSFNFDELKEKVKKLLS 116 (116)
T ss_dssp -EECCSSTHHHHHHHHHHTC
T ss_pred -EECCCCHHHHHHHHHHHhC
Confidence 3467888888888877643
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=29.30 E-value=57 Score=37.80 Aligned_cols=48 Identities=8% Similarity=-0.158 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1009 LqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
|.-+..-+..+.-.+|+.+.|+|||..+..++..+.. . ...+++++.-
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~-~G~~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-A-MGKKVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-T-SCCCEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-H-cCCeEEEEeC
Confidence 4444433344445678899999999877666555443 1 1126777653
No 301
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=27.67 E-value=1.4e+02 Score=32.94 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=42.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh---cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc-----cccCCCC
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA-----GRGLNLQ 1414 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~---rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAG-----GeGLNLQ 1414 (2240)
.+.++||.+..+..+.-+.+.+.. .++....+.|+.+...+... +.. .+.|++.+.... ...+++.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK---GVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS---CCSEEEECHHHHHHHHHTTCCCCT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC---CCCEEEECHHHHHHHHHcCCcCcc
Confidence 577899999999998888877776 37788888888765544332 332 233444443222 2245666
Q ss_pred CCCeEEE
Q 000099 1415 SADTVII 1421 (2240)
Q Consensus 1415 aADtVIi 1421 (2240)
..++||+
T Consensus 167 ~~~~lVi 173 (228)
T 3iuy_A 167 SITYLVI 173 (228)
T ss_dssp TCCEEEE
T ss_pred cceEEEE
Confidence 6776665
No 302
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=27.55 E-value=95 Score=39.79 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=18.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
+...+|.-+.|+|||..+-++...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 445689999999999877555443
No 303
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=27.53 E-value=1.6e+02 Score=28.78 Aligned_cols=96 Identities=13% Similarity=-0.010 Sum_probs=56.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc-----c-cCCCCCCC
Q 000099 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG-----R-GLNLQSAD 1417 (2240)
Q Consensus 1344 GhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG-----e-GLNLQaAD 1417 (2240)
+..|..+......+.. +... +..+.+|-.++...-.++++.++.......|++++..... . -...-.+.
T Consensus 27 ~~~v~~~~~~~~~~~~----~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLTL----SLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHTTS----CCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHHHh----hccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 4455555544333322 2333 6778888887776777778877765566677777755431 1 01112233
Q ss_pred eEEEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1418 TVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1418 tVIifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
..-++.-|+++....+++.++..-+..
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 334455788999999999888765543
No 304
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=27.47 E-value=3.3e+02 Score=30.95 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=54.8
Q ss_pred hcccHHHH-HHHHHHHHHh------cCCeEEEEecchhHHHHHHHHHHh----cCceEEeecCCCCHHHHHHHHHHHhcC
Q 000099 1325 KSCGKLWI-LDRILIKLQR------TGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (2240)
Q Consensus 1325 rsSGKLel-LdrIL~kL~a------tGhKVLIFSQ~t~~LDiLed~L~~----rGiky~rLDGsTs~eEReeaIk~FNs~ 1393 (2240)
..+||-.. +.-++..+.. .+.++||.+..+..+.-+.+.|.. .++.+..+.|+.........+ ..
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~- 175 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN- 175 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH-
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC-
Confidence 35778754 4444444432 578899999998887666655554 477888899988765544333 22
Q ss_pred CCCccEEEEecc------c-ccccCCCCCCCeEEE
Q 000099 1394 DSDCFIFLLSIR------A-AGRGLNLQSADTVII 1421 (2240)
Q Consensus 1394 Ds~~fVfLLSTr------A-GGeGLNLQaADtVIi 1421 (2240)
. +. |+++|. . ...++++...+.||+
T Consensus 176 ~--~~-Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 176 G--IN-IIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp C--CS-EEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred C--CC-EEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 1 33 455552 1 123466777777665
No 305
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=27.47 E-value=2.1e+02 Score=36.76 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEe----chHHHHHHHHHHHHHCCCCe
Q 000099 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIV----PNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k----g~~GP~LIVV----P~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
+.++.-|+.+-....-+|+++ -|+|||..++..|....... ...+-++|+| ..+.+..+.+++...----+
T Consensus 150 iraID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~ 228 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGD-RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKY 228 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEES-TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGG
T ss_pred ceeeccccccccCCEEEEecC-CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCccc
Confidence 567777776555555566665 79999999888887665421 1123334443 35678888888876432234
Q ss_pred EEEEecc
Q 000099 1078 CIYYVGA 1084 (2240)
Q Consensus 1078 Vvvy~Gs 1084 (2240)
++++..+
T Consensus 229 tvvV~at 235 (510)
T 2ck3_A 229 TIVVSAT 235 (510)
T ss_dssp EEEEEEC
T ss_pred ceEEEEC
Confidence 4444443
No 306
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=27.27 E-value=37 Score=39.89 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=19.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (2240)
.+.+.+|..+.|+|||..+-++..
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHHHHHH
Confidence 366889999999999987766543
No 307
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=27.24 E-value=96 Score=37.80 Aligned_cols=50 Identities=16% Similarity=0.005 Sum_probs=35.3
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1007 eGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.+|.+++. -+..+.-.+|+.+.|+|||..++.++..+.. . .+++++|.-.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~-~--g~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-E--GKTCAFIDAE 100 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEeCC
Confidence 45666663 3344555689999999999999888877654 2 3477888753
No 308
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=27.08 E-value=1.3e+02 Score=28.27 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=50.7
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCC--CCccEEEEecccccccCCCCCCCeE
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD--SDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~D--s~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
..|..|..+......++.+. ...+..+.+|-.++...-..+++..+... ..+.|++++...-.. ....+...
T Consensus 23 ~~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~ 96 (119)
T 2j48_A 23 AAGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQAS 96 (119)
T ss_dssp HTTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCS
T ss_pred hCCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHH
Confidence 35677776665555554443 34566777776554433445555555432 355666666543322 21111122
Q ss_pred EEcCCCCChhhHHHHhhhhhc
Q 000099 1420 IIYDPDPNPKNEEQAVARAHR 1440 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhR 1440 (2240)
-++.-|.++....+++.++.+
T Consensus 97 ~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 97 AILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EECSSCSTTHHHHHHHHTTCC
T ss_pred HhccCCCCHHHHHHHHHHHhc
Confidence 344557788888888877654
No 309
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=27.05 E-value=1e+02 Score=36.59 Aligned_cols=53 Identities=21% Similarity=0.133 Sum_probs=33.8
Q ss_pred HHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech
Q 000099 1007 VGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN 1059 (2240)
Q Consensus 1007 eGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~---kg~~GP~LIVVP~ 1059 (2240)
.+|.+++. -+..+.-.+|+.+.|+|||..++.++...... .+..+++++|.-.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 45677663 33344456899999999999888777653211 1114577777754
No 310
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=27.03 E-value=91 Score=46.13 Aligned_cols=57 Identities=16% Similarity=-0.022 Sum_probs=42.4
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 1007 eGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
..|.+++. -+..+.-.+|+.+.|+|||..++.++..+.. ..+++|+|.-.....+|.
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~---~g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECCCcHHHHH
Confidence 45777774 4555566799999999999998888776653 245889998776667775
No 311
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.59 E-value=1.9e+02 Score=28.66 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=57.5
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc--CCCCccEEEEecccccccC--CCCCCC
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS--HDSDCFIFLLSIRAAGRGL--NLQSAD 1417 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs--~Ds~~fVfLLSTrAGGeGL--NLQaAD 1417 (2240)
..|..|..+......++.+ ....+..+.+|-.++..+-.++++.++. ....+.|++++...-..-+ ..-.+.
T Consensus 28 ~~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g 103 (140)
T 3grc_A 28 KGGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLA 103 (140)
T ss_dssp HTTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTC
T ss_pred HCCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcC
Confidence 3566776666555544443 4456778888877665555667777765 3445667777754322111 222222
Q ss_pred eEEEcCCCCChhhHHHHhhhhhccC
Q 000099 1418 TVIIYDPDPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1418 tVIifD~pWNP~~d~QAiGRAhRIG 1442 (2240)
..-++.-|.++.....++.++.+-+
T Consensus 104 ~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 104 VSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp CCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 2333456788899888888886543
No 312
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=26.41 E-value=1.2e+02 Score=35.77 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=22.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (2240)
.+.-..|.|||..+..+...+.. ..+.++++.
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~ 133 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVA 133 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCeEEEec
Confidence 45578999999888776665543 235677765
No 313
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=26.24 E-value=70 Score=32.28 Aligned_cols=50 Identities=8% Similarity=-0.004 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEec-chhHHHHHHHHHHhcCceEEeecCCCC
Q 000099 1330 LWILDRILIKLQRTGHRVLLFST-MTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (2240)
Q Consensus 1330 LelLdrIL~kL~atGhKVLIFSQ-~t~~LDiLed~L~~rGiky~rLDGsTs 1379 (2240)
+..+...+..+...+.+|||||. .-.........|...|+.+..|+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 75 LKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 33344444444332389999994 555566788889999999889999875
No 314
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.18 E-value=1.8e+02 Score=29.14 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=43.4
Q ss_pred HHHHHHhcCCeEEEEec------chhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1336 ILIKLQRTGHRVLLFST------MTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1336 IL~kL~atGhKVLIFSQ------~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
.+.++. ..++|+||+. +...+.....+|...|+.|..++=....+.+..+.+... ...+.++++.
T Consensus 10 ~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g--~~tvP~ifi~ 80 (109)
T 3ipz_A 10 TLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN--WPTFPQLYIG 80 (109)
T ss_dssp HHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CSSSCEEEET
T ss_pred HHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC--CCCCCeEEEC
Confidence 334433 3578999998 688999999999999999887765555555555544332 3344444444
No 315
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=25.68 E-value=1.1e+02 Score=37.98 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=52.1
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeEEEEecchhHHHHHHHHHH----hcCceEEeecCCCCHHHHHHHHHHHhcCCC
Q 000099 1325 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~at-----GhKVLIFSQ~t~~LDiLed~L~----~rGiky~rLDGsTs~eEReeaIk~FNs~Ds 1395 (2240)
..+||-....-.+...... +.++||.+.....+.-+.+.|. ..++.+..++|+++...+...+. .
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~---- 104 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E---- 104 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh--C----
Confidence 3578876544444333332 7789999998877665555444 44999999999987655433222 1
Q ss_pred CccEEEEecccccc----c-C-CCCCCCeEEEcC
Q 000099 1396 DCFIFLLSIRAAGR----G-L-NLQSADTVIIYD 1423 (2240)
Q Consensus 1396 ~~fVfLLSTrAGGe----G-L-NLQaADtVIifD 1423 (2240)
.+.|++.+....-. | + ++...++||+=+
T Consensus 105 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 138 (556)
T 4a2p_A 105 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 138 (556)
T ss_dssp HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEET
T ss_pred CCCEEEECHHHHHHHHHhCcccccccCCEEEEEC
Confidence 13355555444331 1 3 566778777633
No 316
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.64 E-value=3.2e+02 Score=26.96 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=54.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc--CCCCccEEEEeccccccc-CCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS--HDSDCFIFLLSIRAAGRG-LNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs--~Ds~~fVfLLSTrAGGeG-LNLQaADtV 1419 (2240)
.|..|..+......++. +....+..+.+|-.++...-.++++.++. ....+.|++++......- ...-.+...
T Consensus 30 ~g~~v~~~~~~~~a~~~----l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 105 (142)
T 3cg4_A 30 AGFHIISADSGGQCIDL----LKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVV 105 (142)
T ss_dssp TTCEEEEESSHHHHHHH----HHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEE
T ss_pred CCeEEEEeCCHHHHHHH----HHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCcc
Confidence 36666655554444443 34456777777766654444556666654 345667777775432221 122223333
Q ss_pred EEcCCCCChhhHHHHhhhhhcc
Q 000099 1420 IIYDPDPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhRI 1441 (2240)
-++.-|.++....+++.++.+.
T Consensus 106 ~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 106 DYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 3445588899888888887654
No 317
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=25.28 E-value=40 Score=42.22 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
+++-..|.|||.+++.+..++.. . ..++|+|.-..--..-...+..|.....+-++......
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~---~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~-------------- 166 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLRE---KHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQ-------------- 166 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHH---TSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSS--------------
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---hcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCC--------------
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecc
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIID 1129 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIID 1129 (2240)
...+.+......+....+++||||
T Consensus 167 ----dp~~i~~~~l~~~~~~~~D~VIID 190 (433)
T 2xxa_A 167 ----KPVDIVNAALKEAKLKFYDVLLVD 190 (433)
T ss_dssp ----CHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ----CHHHHHHHHHHHHHhCCCCEEEEE
No 318
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=25.16 E-value=4e+02 Score=26.31 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=51.1
Q ss_pred CCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCC--CCccEEEEeccccccc-CCCC--CCCe
Q 000099 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD--SDCFIFLLSIRAAGRG-LNLQ--SADT 1418 (2240)
Q Consensus 1344 GhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~D--s~~fVfLLSTrAGGeG-LNLQ--aADt 1418 (2240)
...|..+......++.+ ....+..+.+|-.++..+-.+++..++... ..+.||+++...-..- ...- +|+.
T Consensus 26 ~~~v~~~~~~~~a~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 101 (140)
T 3n53_A 26 EYLVIESKNEKEALEQI----DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADD 101 (140)
T ss_dssp TSEEEEESSHHHHHHHH----HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSE
T ss_pred cceEEEeCCHHHHHHHH----hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCe
Confidence 35666665555555544 334677888888877766677777777543 5667777776532221 1111 2333
Q ss_pred EEEcCCCCChhhHHHHhhhhhc
Q 000099 1419 VIIYDPDPNPKNEEQAVARAHR 1440 (2240)
Q Consensus 1419 VIifD~pWNP~~d~QAiGRAhR 1440 (2240)
+| --|+++.....++.++.+
T Consensus 102 ~l--~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 102 YL--TKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EE--ESSCCHHHHHHHHHHHHH
T ss_pred ee--eCCCCHHHHHHHHHHHHh
Confidence 33 358899999998888765
No 319
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=25.08 E-value=54 Score=44.14 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=17.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALI 1040 (2240)
.+.+.+|.-+.|+|||..+-++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHH
Confidence 34557899999999997765543
No 320
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=24.57 E-value=2.5e+02 Score=35.36 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC-CCeEEEEecch--hhHhHHHHHHHhhcCCcEEE
Q 000099 1030 LGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP-SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLV 1105 (2240)
Q Consensus 1030 LGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~P-slkVvvy~Gsk--deRk~l~~qei~~~~fdVVI 1105 (2240)
..+....+..+...+......+++||.|+..- +..+...|.+.++ ++.+..++|.. ..|..++ ..+..+..+|+|
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~-~~f~~g~~~vLv 397 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV-KRFKKDESGILV 397 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH-HHHHHCSSEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH-HHHhcCCCCEEE
Confidence 34444455555555544455678999999764 4555566666655 78889999863 4444443 346678889999
Q ss_pred EcH
Q 000099 1106 TTY 1108 (2240)
Q Consensus 1106 TTY 1108 (2240)
+|-
T Consensus 398 aT~ 400 (563)
T 3i5x_A 398 CTD 400 (563)
T ss_dssp ECG
T ss_pred Ecc
Confidence 995
No 321
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=24.08 E-value=87 Score=38.76 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=53.6
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeEEEEecchhHHHHHHHHH----HhcCceEEeecCCCCHHHHHHHHHHHhcCCC
Q 000099 1325 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYL----QWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~at-----GhKVLIFSQ~t~~LDiLed~L----~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds 1395 (2240)
..+||-....-.+...... +.++||.+..+..+.-+.+.+ ...++.+..++|+++...+...+. .
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~---- 101 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII--E---- 101 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh--c----
Confidence 3578876544444333332 778999999987665544444 444999999999986554432221 1
Q ss_pred CccEEEEecccccc----c-C-CCCCCCeEEE
Q 000099 1396 DCFIFLLSIRAAGR----G-L-NLQSADTVII 1421 (2240)
Q Consensus 1396 ~~fVfLLSTrAGGe----G-L-NLQaADtVIi 1421 (2240)
.+.|++.+....-. + + ++...++||+
T Consensus 102 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 102 DNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 23355555443322 1 2 5566677766
No 322
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=23.85 E-value=1.2e+02 Score=36.94 Aligned_cols=40 Identities=15% Similarity=-0.025 Sum_probs=29.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (2240)
.+|+-+.|+|||..++.++..... .+..+.+|+|.....+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchh
Confidence 578999999999999888877664 3234577888765433
No 323
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.56 E-value=2.5e+02 Score=27.79 Aligned_cols=90 Identities=7% Similarity=-0.104 Sum_probs=54.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh-cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe-cccccccCCCCC-CCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS-IRAAGRGLNLQS-ADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~-rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS-TrAGGeGLNLQa-ADtV 1419 (2240)
.|..|..+......+.. +.. ..+..+.+|-.++..+-.++++.++.....+.|++++ ... .... ... |+.
T Consensus 38 ~g~~v~~~~~~~~al~~----l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~-~~~~~~~- 110 (138)
T 2b4a_A 38 LGAEVTVHPSGSAFFQH----RSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRH-ELIE-SSEHNLS- 110 (138)
T ss_dssp TTCEEEEESSHHHHHHT----GGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---CCC-CSSSCEE-
T ss_pred cCCEEEEeCCHHHHHHH----HHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC-CHHH-HHHHHHh-
Confidence 46666655554444433 344 5677888887766545556777777644567777777 332 2222 222 333
Q ss_pred EEcCCCCChhhHHHHhhhhhc
Q 000099 1420 IIYDPDPNPKNEEQAVARAHR 1440 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhR 1440 (2240)
++--|+++.....++.++.+
T Consensus 111 -~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 111 -YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp -EEESSCCHHHHHHHHHHTCC
T ss_pred -eeeCCCCHHHHHHHHHHHHH
Confidence 34457899999999988765
No 324
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=23.41 E-value=1.9e+02 Score=37.45 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
.+||-.+ -+|+-+. .+.++||.+..+..+.-..+.|...|+.+..++|+++..++..++..+......+.|++++..
T Consensus 69 GsGKTl~--~~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 69 GGGKSLC--YQLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp TSCTTHH--HHHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CChHHHH--HHHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 4666532 2333333 356899999999999888888988899999999999999999888888544456667666664
No 325
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=23.28 E-value=2.7e+02 Score=35.50 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCeEEEEecch--hhHhHHHHHHHhhcCCcEEEEc
Q 000099 1032 KTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTT 1107 (2240)
Q Consensus 1032 KTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slkVvvy~Gsk--deRk~l~~qei~~~~fdVVITT 1107 (2240)
+....+..+...+......+++||.|+.. .+..+...|.+.++ ++.+..++|.. ..|..++ ..+..+..+|+|+|
T Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~-~~F~~g~~~vLVaT 348 (579)
T 3sqw_A 270 SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV-KRFKKDESGILVCT 348 (579)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH-HHHHHCSSEEEEEC
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH-HHhhcCCCeEEEEc
Confidence 33344444444444445567899999976 45556666776655 78889999863 4444443 34667888999999
Q ss_pred H
Q 000099 1108 Y 1108 (2240)
Q Consensus 1108 Y 1108 (2240)
-
T Consensus 349 ~ 349 (579)
T 3sqw_A 349 D 349 (579)
T ss_dssp G
T ss_pred c
Confidence 5
No 326
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=23.20 E-value=2.2e+02 Score=28.72 Aligned_cols=59 Identities=14% Similarity=0.069 Sum_probs=41.3
Q ss_pred cCCeEEEEe------cchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1343 TGHRVLLFS------TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1343 tGhKVLIFS------Q~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
..++|+||+ .+...+.....+|...|+.|..+|=....+.|..+.+... ...+.++.+.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g--~~tvP~ifi~ 78 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSS--WPTYPQLYVS 78 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CCSSCEEEET
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHC--CCCCCEEEEC
Confidence 467999999 4778899999999999999888776656555555544332 3344455544
No 327
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=22.75 E-value=2.8e+02 Score=28.56 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=41.0
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhcCce-EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1344 GHRVLLFST------MTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1344 GhKVLIFSQ------~t~~LDiLed~L~~rGik-y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
.++|+||+. +...+.....+|...|+. |..++=....+.+..+.+... ...+.++++.
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg--~~tvP~vfI~ 83 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN--WPTIPQVYLN 83 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHT--CCSSCEEEET
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhC--CCCcCeEEEC
Confidence 468999998 688899999999999995 887776666665555444332 3344555554
No 328
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=22.39 E-value=2.5e+02 Score=30.04 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=54.0
Q ss_pred hcccHHHH-HHHHHHHHH-----hcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHHHHHHhcCCCC
Q 000099 1325 KSCGKLWI-LDRILIKLQ-----RTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (2240)
Q Consensus 1325 rsSGKLel-LdrIL~kL~-----atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReeaIk~FNs~Ds~ 1396 (2240)
..+||-.. +.-++..+. ..+.++||.+..+..+.-+.+.+... ++.+..++|+.........+. + .
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~ 120 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL--R----G 120 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH--H----C
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh--C----C
Confidence 45788765 444444432 24678999999988888777777655 467888888877554433332 1 2
Q ss_pred ccEEEEecccc-----cccCCCCCCCeEEE
Q 000099 1397 CFIFLLSIRAA-----GRGLNLQSADTVII 1421 (2240)
Q Consensus 1397 ~fVfLLSTrAG-----GeGLNLQaADtVIi 1421 (2240)
+.|++.+.... ...+++...+.||+
T Consensus 121 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp CSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 23444443221 12345666666665
No 329
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=22.06 E-value=1.4e+02 Score=39.68 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=50.8
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeEEEEecchhHHHHHHHHH----HhcCceEEeecCCCCHHHHHHHHHHHhcCCC
Q 000099 1325 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYL----QWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~at-----GhKVLIFSQ~t~~LDiLed~L----~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds 1395 (2240)
..+||-....-.+..+... +.++||.|.....+.-+.+.| ...++.+..++|+.+...+...+. .
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~---- 345 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E---- 345 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh--C----
Confidence 3578876644444443333 789999999887766544444 444999999999987655433221 2
Q ss_pred CccEEEEecccccc-----cC-CCCCCCeEEE
Q 000099 1396 DCFIFLLSIRAAGR-----GL-NLQSADTVII 1421 (2240)
Q Consensus 1396 ~~fVfLLSTrAGGe-----GL-NLQaADtVIi 1421 (2240)
.+.|++.+....-. .+ .+...++||+
T Consensus 346 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 23355555433321 12 4556677765
No 330
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=21.77 E-value=2.5e+02 Score=27.48 Aligned_cols=64 Identities=19% Similarity=0.094 Sum_probs=43.8
Q ss_pred HHHHHHhcCCeEEEEe------cchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000099 1336 ILIKLQRTGHRVLLFS------TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (2240)
Q Consensus 1336 IL~kL~atGhKVLIFS------Q~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLL 1402 (2240)
.+.++.. .++|+||+ .+...+..+..+|...++.|..++=....+.+..+...+.. ..+.+|++
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~--~~vP~v~i 78 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW--PTYPQLYV 78 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC--CCCCeEEE
Confidence 3444443 45799998 46778999999999999998888777666666666665542 33444443
No 331
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=21.74 E-value=1.1e+02 Score=33.75 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=28.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (2240)
.+.-.+|+.+.|+|||..++.++..+.. ..++++++.-..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3444588899999999988887776653 235677776443
No 332
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=21.38 E-value=1.5e+02 Score=36.26 Aligned_cols=53 Identities=17% Similarity=0.062 Sum_probs=34.4
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000099 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1007 eGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (2240)
..|+.++. -+..+.-.+|.-+.|+|||..++.++..+.. ..+++++|......
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccccc
Confidence 34666653 2233333478889999999888887766543 33578888765443
No 333
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=20.99 E-value=1e+02 Score=33.18 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHHHHh------cCCeEEEEecchhHHHH-HHHHHHh---cCceEEeecCCCCH
Q 000099 1326 SCGKLWILDRILIKLQR------TGHRVLLFSTMTKLLDI-LEEYLQW---RQLVYRRIDGTTSL 1380 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~a------tGhKVLIFSQ~t~~LDi-Led~L~~---rGiky~rLDGsTs~ 1380 (2240)
.+||-.....++..+.. .+.++||+|.....++- +.+.+.. .++.+..++|+...
T Consensus 58 GsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~ 122 (216)
T 3b6e_A 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQL 122 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---C
T ss_pred CCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCccc
Confidence 35665544444333321 26799999998877665 4444432 26788888887653
No 334
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=20.53 E-value=1.1e+02 Score=36.71 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=24.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
..+.+|..++|+|||..+-++...+ ..+++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~ 85 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL------DVPFTMADAT 85 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechH
Confidence 4567999999999999886665443 2466655443
No 335
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.51 E-value=3.5e+02 Score=27.70 Aligned_cols=58 Identities=12% Similarity=-0.040 Sum_probs=40.8
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhcCce---EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1344 GHRVLLFST------MTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1344 GhKVLIFSQ------~t~~LDiLed~L~~rGik---y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
.++|+||+. +...+.....+|...|+. |..++=....+.|..+.+... ...+.++.+.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg--~~tvP~vfI~ 81 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE--WPTIPQLYVN 81 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT--CCSSCEEEET
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC--CCCCCeEEEC
Confidence 678999998 678899999999999998 877776666555555544332 3344444444
No 336
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=20.24 E-value=1.2e+02 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=17.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (2240)
..+.+|..++|+|||..+-++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34568999999999987766554
No 337
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=20.14 E-value=2.5e+02 Score=30.46 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHHhCCCCCeEEEechHHHHHHH-HHHHHHCCCCeEEEEecch--hhHhHHHHHHHhhcCCcEEEEc
Q 000099 1043 LMEFKGNYGPHLIIVPNAVLVNWK-SELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTT 1107 (2240)
Q Consensus 1043 Lle~kg~~GP~LIVVP~SLL~QW~-~Ef~Kw~PslkVvvy~Gsk--deRk~l~~qei~~~~fdVVITT 1107 (2240)
++......+++||.|+..-...+. ..|.. .++.+..++|.. ..|...+. .+..+...|+|+|
T Consensus 39 ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~r~~~~~-~f~~g~~~vLvaT 103 (185)
T 2jgn_A 39 LLNATGKDSLTLVFVETKKGADSLEDFLYH--EGYACTSIHGDRSQRDREEALH-QFRSGKSPILVAT 103 (185)
T ss_dssp HHHHC-CCSCEEEEESCHHHHHHHHHHHHH--TTCCEEEEC--------CHHHH-HHHHTSSSEEEEE
T ss_pred HHHhcCCCCeEEEEECCHHHHHHHHHHHHH--cCCceEEEeCCCCHHHHHHHHH-HHHcCCCeEEEEc
Confidence 333333457899999976544443 33433 357788888854 34444433 4567788999999
No 338
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=20.06 E-value=2.1e+02 Score=36.69 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHHHHHHHHCCCCeEEEE
Q 000099 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWKSELHKWLPSVSCIYY 1081 (2240)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV----P~SLL~QW~~Ef~Kw~PslkVvvy 1081 (2240)
+.++.-|+.+-....-+|+++ -|+|||..++..|+... ..+-++|+| ..+.+..+.+++...----+++++
T Consensus 150 iraID~l~PigrGQR~~Ifg~-~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV 224 (502)
T 2qe7_A 150 IKAIDSMIPIGRGQRELIIGD-RQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVV 224 (502)
T ss_dssp CHHHHHSSCCBTTCBCEEEEC-SSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEE
T ss_pred eeecccccccccCCEEEEECC-CCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEE
Confidence 466776666555555556665 89999998877776432 233333444 356788888888774322344444
Q ss_pred ecc
Q 000099 1082 VGA 1084 (2240)
Q Consensus 1082 ~Gs 1084 (2240)
..+
T Consensus 225 ~at 227 (502)
T 2qe7_A 225 TAS 227 (502)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 339
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=20.02 E-value=3.6e+02 Score=34.74 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHHHHHHHHCCCCeEEEE
Q 000099 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWKSELHKWLPSVSCIYY 1081 (2240)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV----P~SLL~QW~~Ef~Kw~PslkVvvy 1081 (2240)
+.++..|+.+-....-+|+++ -|+|||..++..|... ...+-++|+| ..+.+..+.++|...----+++++
T Consensus 150 ikaID~l~PigrGQR~~Ifg~-~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV 224 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQRELIIGD-RQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVV 224 (513)
T ss_dssp CHHHHHHSCCBTTCBCEEEES-SSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEE
T ss_pred eeeeccccccccCCEEEeecC-CCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEE
Confidence 567777776666555566666 8999998877666432 2233334443 467788888888775322334444
Q ss_pred ecc
Q 000099 1082 VGA 1084 (2240)
Q Consensus 1082 ~Gs 1084 (2240)
..+
T Consensus 225 ~at 227 (513)
T 3oaa_A 225 VAT 227 (513)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
Done!